Citrus Sinensis ID: 005093
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 715 | 2.2.26 [Sep-21-2011] | |||||||
| Q8R146 | 732 | Acylamino-acid-releasing | yes | no | 0.927 | 0.905 | 0.333 | 5e-99 | |
| P13676 | 732 | Acylamino-acid-releasing | yes | no | 0.927 | 0.905 | 0.326 | 4e-97 | |
| P19205 | 732 | Acylamino-acid-releasing | yes | no | 0.920 | 0.898 | 0.321 | 2e-94 | |
| P13798 | 732 | Acylamino-acid-releasing | yes | no | 0.927 | 0.905 | 0.314 | 2e-93 | |
| P80227 | 730 | Acylamino-acid-releasing | yes | no | 0.920 | 0.901 | 0.324 | 4e-92 | |
| P39839 | 657 | Uncharacterized peptidase | yes | no | 0.311 | 0.339 | 0.320 | 7e-31 | |
| P34422 | 740 | Dipeptidyl peptidase fami | no | no | 0.310 | 0.3 | 0.293 | 4e-23 | |
| Q95WU5 | 761 | Dipeptidyl-peptidase 4 OS | N/A | no | 0.328 | 0.308 | 0.237 | 6e-14 | |
| Q9YBQ2 | 582 | Acylamino-acid-releasing | no | no | 0.276 | 0.340 | 0.264 | 1e-13 | |
| Q5BA58 | 722 | Probable dipeptidyl-pepti | yes | no | 0.313 | 0.310 | 0.236 | 7e-13 |
| >sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 362 bits (930), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 242/725 (33%), Positives = 369/725 (50%), Gaps = 62/725 (8%)
Query: 5 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 63
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLDRMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 64 ---ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GAVSGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 120 PSKPTF--------SLGSTKGGSSDKDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININ 170
P +F S + K + KG Q + EDWGET K P L V++I
Sbjct: 171 PKAESFFQTKALDVSASDEEMARPKKPDQAIKGDQFVFYEDWGETMVSKSIPVLCVLDIE 230
Query: 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 230
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI+YC NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRYCTNRRSALYYVD 286
Query: 231 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 290
+S K E S E L V + PR SPD +V+L S H
Sbjct: 287 LSGGKCELL-------SDESLAVCS----------PRLSPDQCRVVYLQYPSL---APHH 326
Query: 291 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 350
L DW T +SL +VD++P G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLFLYDWYTK--VTSL--VVDIVPR---QLGESFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 351 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410
S+ S Q + +V+ +G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SVQRSRQDLFAVDTQTGSVTSLTAGGSAGSWKLLTIDRDLMVAQFSTPNLPPSLKVGFLP 439
Query: 411 DKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 468
+ + SW+++ + PI ++ ++ P + A FEAI
Sbjct: 440 PAGKEQSVSWVSLEEAEPIPDIHWGIR---------VLHPPPDQENVQY---ADLDFEAI 487
Query: 469 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 528
+ S+ D S P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPSNSPDKSQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 529 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 588
+ SLPG VG QDV DV A+ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVQQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSAC 607
Query: 589 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 648
ARNP+ N+ M+GTTDIPDWC VE+ D P + L KSPI +I +VK
Sbjct: 608 IARNPVINIVSMMGTTDIPDWCMVETGFPYSNDYL---PDLNVLEEMLDKSPIKYIPQVK 664
Query: 649 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 708
TP + +LG +D RVP GL+Y AL+ + V +++++P H + + + +SF+N L
Sbjct: 665 TPVLLMLGQEDRRVPFKQGLEYYHALKARNVPVRLLLYPKSTHALSEVEVESDSFMNTVL 724
Query: 709 WFKKY 713
W +
Sbjct: 725 WLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Mus musculus (taxid: 10090) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1 |
| >sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 237/725 (32%), Positives = 370/725 (51%), Gaps = 62/725 (8%)
Query: 5 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 63
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 64 ---ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GTVSGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 120 PSKPTF--------SLGSTKGGSSDKDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININ 170
P +F S + K + KG Q + EDWGET K P L V++I+
Sbjct: 171 PKAESFFQTKALDISASDDEMARPKKPDQAIKGDQFVFYEDWGETMVSKSIPVLCVLDID 230
Query: 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 230
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI+YC NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRYCTNRRSALYYVD 286
Query: 231 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 290
+S K E L++ + PR SPD +V+L H
Sbjct: 287 LSGGKCEL-----------------LSDGSLAICSPRLSPDQCRIVYLQYPCL---APHH 326
Query: 291 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 350
L DW T +VD++P G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLCLYDWYTKVT----SVVVDIVPR---QLGESFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 351 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410
S S Q + +V+ +G + +T A S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SAQRSRQDLFAVDTQTGSITSLTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLP 439
Query: 411 DKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 468
+ + SW+++ + PI V+ ++ P + A FEAI
Sbjct: 440 PPGKEQSVSWVSLEEAEPIPGIHWGVR---------VLHPPPDQENVQY---ADLDFEAI 487
Query: 469 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 528
+ S+ D + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPSNPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 529 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 588
+ SLPG VG QDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVEQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSAC 607
Query: 589 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 648
ARNP+ N+A M+G+TDIPDWC VE+ G +S P + KSPI +I +VK
Sbjct: 608 IARNPVINIASMMGSTDIPDWCMVET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVK 664
Query: 649 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 708
TP + +LG +D RVP G++Y RAL+ + V +++++P H + +++ +SF+N L
Sbjct: 665 TPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVL 724
Query: 709 WFKKY 713
W +
Sbjct: 725 WLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 233/724 (32%), Positives = 363/724 (50%), Gaps = 66/724 (9%)
Query: 5 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 64
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 65 NESPIQ----FELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119
+ E+W +++ K F++ HG VY D F +SW+ ET + YVA++
Sbjct: 111 GTGTAEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVADKKR 170
Query: 120 PSKPTFSLGSTKG----GSSDKDCNSWKG----QGD---WEEDWGETYAGKRQPSLFVIN 168
P +F TK GS D+ + K +GD + EDWGE K P L V++
Sbjct: 171 PKAESFF--QTKALDVTGSDDEMARTKKPDQAIKGDQFLFYEDWGENMVSKSTPVLCVLD 228
Query: 169 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 228
I SG + ++G+P+S+S GQ WAP + G+ VFVGW E +LGI++C NR ALY
Sbjct: 229 IESGNISVLEGVPESVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRFCTNRRSALYY 284
Query: 229 VRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 288
V ++ K E S E + V + PR SPD +V+L S V
Sbjct: 285 VDLTGGKCELL-------SDESVAVTS----------PRLSPDQCRIVYLRFPSLV---P 324
Query: 289 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 348
H L DW T +VD++P G+ F G+Y S + W +D ++
Sbjct: 325 HQQCGQLCLYDWYTRVT----SVVVDIVPR---QLGEDFSGIYCSLLPLGCWSADSQRVV 377
Query: 349 LSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 408
S S Q + +V+ G + +T S SW LLT+D D ++ S+P P +K G+
Sbjct: 378 FDSPQRSRQDLFAVDTQMGSVTSLTAGGSGGSWKLLTIDRDLMVVQFSTPSVPPSLKVGF 437
Query: 409 FVDKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFE 466
+ SW+++ + P ++ L Q + A FE
Sbjct: 438 LPPAGKEQAVSWVSLEEAEPFPDISWSIRVLQPPPQ------------QEHVQYAGLDFE 485
Query: 467 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE 526
AI + S+ + + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+
Sbjct: 486 AILLQPSNSPEKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQ 545
Query: 527 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV 586
+++ SLPG VG QDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ +
Sbjct: 546 DSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYS 605
Query: 587 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK 646
A RNP+ N+A M+G+TDIPDWC VE+ S D P + KSPI + +
Sbjct: 606 ACVVRNPVINIASMMGSTDIPDWCMVEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQ 662
Query: 647 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 706
VKTP + +LG +D RVP G++Y R L+ + V +++++P H + + + +SF+N
Sbjct: 663 VKTPLLLMLGQEDRRVPFKQGMEYYRVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNA 722
Query: 707 GLWF 710
LW
Sbjct: 723 VLWL 726
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 344 bits (882), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 228/725 (31%), Positives = 362/725 (49%), Gaps = 62/725 (8%)
Query: 5 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 64
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 65 NESPIQ----FELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119
P + E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GTGPGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 120 PSKPTF-SLGSTKGGSSDKDCNSWKG-----QGD---WEEDWGETYAGKRQPSLFVININ 170
P +F + +SD + K +GD + EDWGE K P L V+++
Sbjct: 171 PKAESFFQTKALDVSASDDEIARLKKPDQAIKGDQFVFYEDWGENMVSKSIPVLCVLDVE 230
Query: 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 230
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI++C NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDAGV----VFVGWWHEPFRLGIRFCTNRRSALYYVD 286
Query: 231 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 290
+ K E L++ + PR SPD +V+L S + H
Sbjct: 287 LIGGKCEL-----------------LSDDSLAVSSPRLSPDQCRIVYLQYPSLI---PHH 326
Query: 291 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 350
L DW T ++ + + G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLCLYDWYTKVTSVVVDVVPRQL-------GENFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 351 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF- 409
S S Q + +V+ G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SAQRSRQDLFAVDTQVGTVTSLTAGGSGGSWKLLTIDQDLMVAQFSTPSLPPTLKVGFLP 439
Query: 410 -VDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 468
K W L + PI ++ +++ P + + A FEAI
Sbjct: 440 SAGKEQSVLWVSLEEAEPIPDIHWGIR---------VLQPPPEQENVQY---AGLDFEAI 487
Query: 469 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 528
+ D + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPGSPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 529 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 588
+ SLPG VG QDV DV A++ V+ + S V ++GGSHGGF++ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRAC 607
Query: 589 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 648
ARNP+ N+A M+G+TDIPDWC VE+ D P + KSPI +I +VK
Sbjct: 608 VARNPVINIASMLGSTDIPDWCVVEAGFPFSSDCL---PDLSVWAEMLDKSPIRYIPQVK 664
Query: 649 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 708
TP + +LG +D RVP G++Y RAL+ + V +++++P H + + + +SF+N L
Sbjct: 665 TPLLLMLGQEDRRVPFKQGMEYYRALKTRNVPVRLLLYPKSTHALSEVEVESDSFMNAVL 724
Query: 709 WFKKY 713
W + +
Sbjct: 725 WLRTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P80227|ACPH_BOVIN Acylamino-acid-releasing enzyme OS=Bos taurus GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 339 bits (870), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 234/722 (32%), Positives = 364/722 (50%), Gaps = 64/722 (8%)
Query: 5 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 63
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 64 -ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+ P
Sbjct: 111 STGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKRPK 170
Query: 122 KPTFSLGSTKG----GSSDKDCNSWKG----QGD---WEEDWGETYAGKRQPSLFVININ 170
+F TK GS D+ K +GD + EDWGE K P L V++I
Sbjct: 171 AESFF--QTKALDISGSDDEMARPKKPDQAIKGDQFLFYEDWGENMVSKGSPVLCVLDIE 228
Query: 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 230
SG + ++G+P+S+S GQ WAP + G+ VF GW E +LGI++C NR ALY V
Sbjct: 229 SGNISVLEGVPESVSPGQAFWAPGDTGV----VFAGWWHEPFRLGIRFCTNRRSALYYVD 284
Query: 231 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 290
++ EL S + L V + PR SPD +V+L S V H
Sbjct: 285 LT-----GGNCELL--SDDSLAVTS----------PRLSPDQCRIVYLQFPSLV---PHQ 324
Query: 291 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 350
L DW T ++ + + G+ F G+Y S + W +D ++
Sbjct: 325 QCGQLCLYDWYTRVTVVVVDVVPRQL-------GENFSGIYCSLLPLGCWSADSQRVVFD 377
Query: 351 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF- 409
+ S Q + +V+ G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 378 TAQRSRQDLFAVDTQMGTVTPLTAGGSGGSWKLLTIDRDLMVAQFSTPNLPPCLKVGFLP 437
Query: 410 -VDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 468
+ W L + PI ++ +++ P + A FEAI
Sbjct: 438 PAGMEQEVVWVSLEEAEPIPDISWSIR---------VLQPPPEQEHAQYVG---LDFEAI 485
Query: 469 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 528
+ S+ D + P++V+ HGGPHS ++S+ A L +G++ L+VNYRGS GFG+++
Sbjct: 486 LIQPSNPPDKTQVPMVVMPHGGPHSSFVTSWMLLPAMLCKMGFAALLVNYRGSTGFGQDS 545
Query: 529 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 588
+ SLPG VGSQDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 546 ILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALLGGSHGGFLSCHLIGQYPETYGAC 605
Query: 589 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 648
RNP+ N+A M+G+TDIPDWC VE+ D + P+V + +KSPI + +VK
Sbjct: 606 VVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCLPD-PNV--WSEMLNKSPIKYTPQVK 662
Query: 649 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 708
TP + +LG +D RVP G++Y RAL+ + V +++++P H + + + +SF+N +
Sbjct: 663 TPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLLYPKSTHSLSEVEVESDSFMNAVI 722
Query: 709 WF 710
W
Sbjct: 723 WM 724
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168) GN=yuxL PE=3 SV=3 | Back alignment and function description |
|---|
Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
PLI+ +HGGPH + +Y L++ GY+++ +N RGS G+G+E + ++ G G +D
Sbjct: 431 PLILNIHGGPHMMYGHTYFHEFQVLAAKGYAVVYINPRGSHGYGQEFVNAVRGDYGGKDY 490
Query: 542 NDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 600
+DV+ A+D I +P ++ V GGS+GGF+T ++GQ ++F AA + + N
Sbjct: 491 DDVMQAVDEAIKRDPHIDPKRLGVTGGSYGGFMTNWIVGQT-NRFKAAVTQRSISNWISF 549
Query: 601 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 660
G +DI G D E ED + +SP+ + + V+TP + L G +D
Sbjct: 550 HGVSDI---------GYFFTDWQLEHDMFEDTEKLWDRSPLKYAANVETPLLILHGERDD 600
Query: 661 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---PQSDFESFLNIGLWFKKYC 714
R P+ Q AL++ G ETK++ FPN H + R P+ + I WF ++
Sbjct: 601 RCPIEQAEQLFIALKKMGKETKLVRFPNASHNLSRTGHPRQRIKRLNYISSWFDQHL 657
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 13/235 (5%)
Query: 483 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 542
+IV++HGGP + +S A+L++ GYS+L VN+RGS GFG+ + G+ G +
Sbjct: 431 MIVLVHGGPKARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHF 490
Query: 543 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 602
D+L A++ + G+AN S+V V+GGS+GG+ T + P F NL +V
Sbjct: 491 DILDAVEFAVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQ 550
Query: 603 TTDIPDWC-----YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 657
P W ++ G+ D E S+SP+ +V P + + GA
Sbjct: 551 AIP-PYWLGFRKDLIKMVGADISDE-------EGRQSLQSRSPLFFADRVTKPIMIIQGA 602
Query: 658 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712
D RV + Q+ AL +K + +++P++ HG+ +PQ+ E +I + ++
Sbjct: 603 NDPRVKQAESDQFVAALEKKHIPVTYLLYPDEGHGVRKPQNSMEQHGHIETFLQQ 657
|
Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|Q95WU5|DPP_GIAIN Dipeptidyl-peptidase 4 OS=Giardia intestinalis GN=DPP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 18/253 (7%)
Query: 469 FVSSSHKKDCSCDPLIVVLHGGPHS--VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE 526
+ + ++ +D PLI+ +HGGP S + SY + +++ GY +L N+ GS FGE
Sbjct: 518 YFAPANLRDSHEYPLILYVHGGPESPWANSWSYRWNPQLIAARGYGVLATNFHGSSSFGE 577
Query: 527 EALQSLPGKVGSQDVNDVLTAIDHVI---DMGLANPSKVTVVGGSHGGFLTTHL---IGQ 580
+S+ G S + D++ A ++ D + KV +G S G ++ +
Sbjct: 578 VFQKSVRGNWYSYPLEDIMDAWSNIYTHADKAYLSREKVCAMGASFGATFMNYMNSHVNN 637
Query: 581 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 640
+ +CN AL P V G F V++ + +P
Sbjct: 638 VTCYVTHDGVFDTMCN-ALETDELFFP----VRELGG-----FLLDEQVDNQQLYEKWNP 687
Query: 641 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 700
+ + P + + G +D R+ V +G+ +ALR +G++TK++ FP H + +PQ
Sbjct: 688 ARFVENMSAPMLVIHGQKDYRIQVYHGISLFQALRLRGIKTKLVYFPTQSHWVWQPQESL 747
Query: 701 ESFLNIGLWFKKY 713
+ W Y
Sbjct: 748 FWHTQVFDWLDTY 760
|
May be involved in metabolism of dipeptides or may affect host defense mechanisms. Giardia intestinalis (taxid: 5741) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|Q9YBQ2|APEH_AERPE Acylamino-acid-releasing enzyme OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_1547.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 14/212 (6%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
P +V++HGGP + S+ A L++ G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 601
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 602 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 661
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 526
Query: 662 VPVSNGLQYARALREKGVETKVIVFPNDVHGI 693
P+ L+ L +G + + P+ H I
Sbjct: 527 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAI 558
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q5BA58|DPP5_EMENI Probable dipeptidyl-peptidase 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dpp5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 13/237 (5%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSL--AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539
PL ++HGGP +S+S + GY ++ N GS G+G+E ++ G
Sbjct: 469 PLAFLIHGGPQGAWYNSWSSRWNPKVFADQGYVVVAPNPTGSTGYGDELTDAIQNNWGGA 528
Query: 540 DVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNL 597
D++ A ++V D + + + G S+GGF+ + G + F A +
Sbjct: 529 PYEDLVKAWEYVRDNLDYVDTDRGVAAGASYGGFMVNWIQGSDLGREFKALVTHDGTFVA 588
Query: 598 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 657
+ T ++ W + D V D R S I + TP + +
Sbjct: 589 DAKISTEEL--WFMEREFNGTFWD-------VRDNYRRFDPSAPERILRFATPHLIIHND 639
Query: 658 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714
D R+PV+ GL L+E+GV ++ + FP++ H + P++ + W KY
Sbjct: 640 LDYRLPVAEGLSLFNVLQERGVPSRFLNFPDENHWVTSPENSLVWHQQVLGWLNKYS 696
|
Extracellular dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 715 | ||||||
| 359477374 | 822 | PREDICTED: acylamino-acid-releasing enzy | 0.998 | 0.868 | 0.775 | 0.0 | |
| 356536605 | 766 | PREDICTED: acylamino-acid-releasing enzy | 0.997 | 0.930 | 0.748 | 0.0 | |
| 255551973 | 771 | acylamino-acid-releasing enzyme, putativ | 0.995 | 0.923 | 0.749 | 0.0 | |
| 356534785 | 758 | PREDICTED: acylamino-acid-releasing enzy | 1.0 | 0.943 | 0.707 | 0.0 | |
| 357487227 | 832 | Acylamino-acid-releasing enzyme [Medicag | 0.995 | 0.855 | 0.741 | 0.0 | |
| 357487225 | 768 | Acylamino-acid-releasing enzyme [Medicag | 0.995 | 0.927 | 0.741 | 0.0 | |
| 357487229 | 810 | Acylamino-acid-releasing enzyme [Medicag | 0.998 | 0.881 | 0.643 | 0.0 | |
| 115482018 | 775 | Os10g0415600 [Oryza sativa Japonica Grou | 0.986 | 0.909 | 0.635 | 0.0 | |
| 78708638 | 839 | prolyl oligopeptidase family protein, ex | 0.986 | 0.840 | 0.635 | 0.0 | |
| 42566792 | 764 | acylaminoacyl-peptidase [Arabidopsis tha | 0.986 | 0.922 | 0.660 | 0.0 |
| >gi|359477374|ref|XP_002284013.2| PREDICTED: acylamino-acid-releasing enzyme-like isoform 1 [Vitis vinifera] gi|297737147|emb|CBI26348.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1132 bits (2928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/717 (77%), Positives = 626/717 (87%), Gaps = 3/717 (0%)
Query: 1 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV 60
MFSISQ NLLANKR+K +LS ISKE+++SV FQWAPFP+EM G S +VPSPSGSKLLVV
Sbjct: 107 MFSISQTNLLANKRRKQILSAHISKESDHSVNFQWAPFPIEMMGVSTMVPSPSGSKLLVV 166
Query: 61 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120
RNPENESP QFE+W SQLEKEF+VPQ+VHGSVY DGWFEGISWNSDETLIAYVAEEPSP
Sbjct: 167 RNPENESPTQFEIWGPSQLEKEFNVPQSVHGSVYTDGWFEGISWNSDETLIAYVAEEPSP 226
Query: 121 SKPTFS-LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 179
SKPTF G KG S+DK+ SWKG G+WEE WGETYAGKRQP+LFVINI SGEV AV+G
Sbjct: 227 SKPTFGGSGYKKGDSADKESGSWKGLGEWEEHWGETYAGKRQPALFVINIESGEVHAVEG 286
Query: 180 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239
I KSLS+GQV+WAPL EG QYLVFVGWSSETRKLGIKYCYNRPCALYAVR +S+A+
Sbjct: 287 ISKSLSIGQVIWAPLAEGFSQYLVFVGWSSETRKLGIKYCYNRPCALYAVRAPFCESKAN 346
Query: 240 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 299
EL+ K + +ED VVNLT+SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI
Sbjct: 347 ELQSKSNVNEDSTVVNLTQSISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIA 406
Query: 300 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359
WPT+G IVDVIPV+ CAE FPGLY SSILSNPWLSDGCTM+LSS W S+QVI
Sbjct: 407 WPTDGKPCPSANIVDVIPVMMCAEDGYFPGLYCSSILSNPWLSDGCTMILSSAWHSTQVI 466
Query: 360 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKG-TW 418
+SV+V SG + ++P +S FSW++LTLDGDNI+AV SSP+D+P++KYG+ +K +W
Sbjct: 467 LSVDVLSGNVSHVSPNDSGFSWNVLTLDGDNIVAVCSSPIDIPEMKYGWLAEKTTASDSW 526
Query: 419 SWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDC 478
SWL+VS+PI RC EK++SLLSS QFSIMKIPVK VS LTKG+ KPFEAIFVSS+ K D
Sbjct: 527 SWLDVSNPIPRCSEKIRSLLSSLQFSIMKIPVKDVSDCLTKGSCKPFEAIFVSSNKKND- 585
Query: 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538
+CDPLIVVLHGGPHSVS SS+SK+LAFLSS+GYSLLIVNYRGSLGFGEEALQSLPGK+GS
Sbjct: 586 TCDPLIVVLHGGPHSVSSSSFSKNLAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGKIGS 645
Query: 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
QDVNDVLTAIDHVIDMGL +PSK+ VVGGSHGGFLT+HLIGQAPDKF AA RNP+CNLA
Sbjct: 646 QDVNDVLTAIDHVIDMGLCDPSKIAVVGGSHGGFLTSHLIGQAPDKFAVAAVRNPVCNLA 705
Query: 599 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 658
LMVGTTDIPDWC+VE+YGS+GK+SFTE+PS E LT HSKSP+SHI KVKTPT+FLLGAQ
Sbjct: 706 LMVGTTDIPDWCFVEAYGSQGKNSFTEAPSAEQLTLLHSKSPVSHIHKVKTPTLFLLGAQ 765
Query: 659 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
DLRVPVSNGL YAR L+EKGVE KVI+FPNDVH IERPQSDFESFLNIG+WFKKYC+
Sbjct: 766 DLRVPVSNGLHYARELKEKGVEVKVIIFPNDVHAIERPQSDFESFLNIGVWFKKYCE 822
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536605|ref|XP_003536827.1| PREDICTED: acylamino-acid-releasing enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/719 (74%), Positives = 630/719 (87%), Gaps = 6/719 (0%)
Query: 1 MFSISQPNLLANKRKKFMLS-TVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLV 59
MF +SQPNLL NKRKK ++S T++++ + +SVTFQWAPFP++++G SA+VPSPSGSKLL+
Sbjct: 50 MFCVSQPNLLVNKRKKSIVSATILTQNDASSVTFQWAPFPIQVSGVSAMVPSPSGSKLLI 109
Query: 60 VRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119
VRNPE++ P +FE+WS SQL+KEFH+P + HGSVY DGWFEGISWNSDET IAYVAEEP+
Sbjct: 110 VRNPESDGPCRFEIWSSSQLQKEFHIPPSKHGSVYTDGWFEGISWNSDETCIAYVAEEPA 169
Query: 120 PSKPTFSL--GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV 177
P+KPTF+ G K GSS+KDC +WKGQG+WEEDWGETYAGKRQP+ FVININSGEVQAV
Sbjct: 170 PTKPTFNDLGGYKKAGSSEKDCGTWKGQGEWEEDWGETYAGKRQPAPFVININSGEVQAV 229
Query: 178 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237
KGI KSLSVGQVVWAP EG Q+LVFVGW+ ETRKLGIKYCYNRPCALY V+ ++S+
Sbjct: 230 KGIDKSLSVGQVVWAPSTEGSAQHLVFVGWTFETRKLGIKYCYNRPCALYVVKAPHHESK 289
Query: 238 ASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 297
A+E E+ S+ED+ VNLT++ISSAFFPRFSPDGKFLVF+SA+SSVDSG HSATDSLHR
Sbjct: 290 ANETEIH--STEDVQAVNLTQTISSAFFPRFSPDGKFLVFVSARSSVDSGVHSATDSLHR 347
Query: 298 IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 357
IDWP + KI +VIPVV AE FPGLY S+ILS+PWLSDG T++++SIW SSQ
Sbjct: 348 IDWPEDSKLYKSAKIHEVIPVVLFAEDGGFPGLYCSTILSDPWLSDGYTLVIASIWHSSQ 407
Query: 358 VIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA-NKG 416
V++S+NV SGELLRITPA+SNFSWSLL LDG+NI+AVSSSPVDVPQ+KYG V KA N
Sbjct: 408 VLLSINVLSGELLRITPADSNFSWSLLALDGNNILAVSSSPVDVPQIKYGAIVKKAANNK 467
Query: 417 TWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKK 476
WSW +V++PI +C +KV+SL+SS FSIMKI VK +SA+LTKGA +P+EAIFVSS KK
Sbjct: 468 EWSWSDVANPIFKCSDKVRSLISSLTFSIMKISVKDISASLTKGASQPYEAIFVSSKTKK 527
Query: 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536
+ DPLIVVLHGGPH+VSLSS+SK LA+LSS+GYSLLIVNYRGSLGFGEEALQSLPGK
Sbjct: 528 SDALDPLIVVLHGGPHTVSLSSFSKPLAYLSSLGYSLLIVNYRGSLGFGEEALQSLPGKA 587
Query: 537 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 596
GSQDVNDVLTAIDHVI++GLA+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CN
Sbjct: 588 GSQDVNDVLTAIDHVINLGLASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCN 647
Query: 597 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLG 656
LALMVGTTDIPDWCYVE+YG+KG+D FTE+PS EDLT F+SKSPI+H+SKVKTPTIFLLG
Sbjct: 648 LALMVGTTDIPDWCYVETYGTKGRDKFTEAPSAEDLTLFYSKSPIAHLSKVKTPTIFLLG 707
Query: 657 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
AQDLRVP+S GLQYARALREKG + KVIVFPNDVHGIERPQSDFES+LNI +WF KYCK
Sbjct: 708 AQDLRVPISTGLQYARALREKGGQVKVIVFPNDVHGIERPQSDFESYLNIAMWFNKYCK 766
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551973|ref|XP_002517031.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] gi|223543666|gb|EEF45194.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/718 (74%), Positives = 613/718 (85%), Gaps = 6/718 (0%)
Query: 1 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV 60
+FSISQ NLL NKR+KFMLS ISK+ SV FQWAPFP+EMTG S +VPSPSGSKLLV+
Sbjct: 57 IFSISQANLLVNKRRKFMLSASISKQVSGSVNFQWAPFPIEMTGVSTMVPSPSGSKLLVI 116
Query: 61 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120
RNPENESP FE+WSQ Q+EKEFHVPQ+VHGSVY DGWFEGISWNSDETL+A+VAEEPSP
Sbjct: 117 RNPENESPTHFEIWSQGQMEKEFHVPQSVHGSVYTDGWFEGISWNSDETLVAFVAEEPSP 176
Query: 121 SKPTFS-LGSTKG-GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 178
KP FS LG G + DKD NSWKGQG+WEE WGETYAGKRQ +LFVI+ +SGEV+ VK
Sbjct: 177 PKPVFSGLGYKTGEANKDKDYNSWKGQGEWEEGWGETYAGKRQSALFVISTSSGEVKPVK 236
Query: 179 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238
GI KSLSVGQVVWAP + +Q LVFVGWS++ RKLGIKYCYNRPCALYAV+ +Y+SE
Sbjct: 237 GIAKSLSVGQVVWAPSTKDSYQCLVFVGWSADPRKLGIKYCYNRPCALYAVQAPVYRSE- 295
Query: 239 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 298
SE ELK++ E P +NLT+SISSAF P FSP G+ LVFLSAKSSVDSGAH T SLHRI
Sbjct: 296 SEFELKDNPIEGSPALNLTQSISSAFLPLFSPVGRLLVFLSAKSSVDSGAHMGTGSLHRI 355
Query: 299 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 358
DWP NG SSL KIVDV+PVVQCAE CFPGLY S LSNPWLSDGCTM+LSS+W S +V
Sbjct: 356 DWPVNG--SSLPKIVDVVPVVQCAEDGCFPGLYCSGFLSNPWLSDGCTMILSSVWHSCEV 413
Query: 359 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK-GT 417
++S+NV SG++ RI+P +S FSW++L LDGDNIIAVSSSPVD+P ++YG V K + T
Sbjct: 414 LLSINVLSGDVKRISPIDSKFSWNVLALDGDNIIAVSSSPVDMPGIRYGSLVSKTTENAT 473
Query: 418 WSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKD 477
W+WL+ SSPI RC E+V+SLLSSR F I+KIPVK VS TK A KPFEAI VSS KK+
Sbjct: 474 WNWLDASSPIFRCSEEVRSLLSSRHFDILKIPVKDVSGCPTKSASKPFEAIIVSSYSKKN 533
Query: 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537
+ DPLIV+LHGGPHSVS SS+SKSLAFLSS+GYSLLIVNYRGS+GFGEEALQSLPGKVG
Sbjct: 534 GASDPLIVMLHGGPHSVSSSSFSKSLAFLSSLGYSLLIVNYRGSIGFGEEALQSLPGKVG 593
Query: 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 597
SQDVNDVLTAIDHVID G+A+PS + V+GGSHGGFLTTHLIGQ+P KFVAAAARNP+CNL
Sbjct: 594 SQDVNDVLTAIDHVIDTGIASPSSIAVLGGSHGGFLTTHLIGQSPHKFVAAAARNPVCNL 653
Query: 598 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 657
A MVGTTDIPDWCYVE+YG+ GK FTE+PS +DL FHSKSPISHISKVK PTIFL+GA
Sbjct: 654 ASMVGTTDIPDWCYVEAYGTGGKSKFTEAPSADDLALFHSKSPISHISKVKAPTIFLIGA 713
Query: 658 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
QDLRVP+SNGLQYARAL+EKGVE K+++FP+DVHGIERPQSDFESFLNIG+WFKKYCK
Sbjct: 714 QDLRVPMSNGLQYARALKEKGVEVKILLFPDDVHGIERPQSDFESFLNIGVWFKKYCK 771
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534785|ref|XP_003535932.1| PREDICTED: acylamino-acid-releasing enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1056 bits (2731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/718 (70%), Positives = 598/718 (83%), Gaps = 3/718 (0%)
Query: 1 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV 60
MF +SQP+LL NKR+ ++S I K++++SV F WAPFP+EM+G S +VPSPSGSKLLV+
Sbjct: 41 MFVVSQPDLLTNKRRTSIMSCNILKQSDSSVKFLWAPFPIEMSGVSMIVPSPSGSKLLVI 100
Query: 61 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120
RNPENE+P FE+WS S++EKEFH+PQ++HGSVY DGWFEG+SWN DET IAYVAEE SP
Sbjct: 101 RNPENEAPCCFEIWSSSRMEKEFHIPQSLHGSVYNDGWFEGVSWNLDETCIAYVAEESSP 160
Query: 121 SKPTFSL--GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 178
+KPTF+ G KGG +DKD WKGQGDWEEDWGETYAG+R+P+LFVININS +VQ VK
Sbjct: 161 AKPTFNDLGGYKKGGCADKDLGYWKGQGDWEEDWGETYAGRRRPALFVININSRDVQEVK 220
Query: 179 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238
GI KSLS+GQVVWAP EG QYLVFVGWSS+ RKLGIKYC NRPCALY VRV E+
Sbjct: 221 GIDKSLSIGQVVWAPFTEGSEQYLVFVGWSSKPRKLGIKYCSNRPCALYTVRVRALHHES 280
Query: 239 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 298
E S+E+ +NLT++ISSAFFPRFSPDGKFLVFLSA+S+VDSG H+AT+SLHRI
Sbjct: 281 KPNEPVVQSTEEFHALNLTQTISSAFFPRFSPDGKFLVFLSARSAVDSGVHNATNSLHRI 340
Query: 299 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 358
DWPT+G KI D+IPVV CAE CFPGLY ++I +NPWLSD CTM++SSIW SS+V
Sbjct: 341 DWPTDGKLFQSSKIYDIIPVVMCAEDGCFPGLYCTTIHNNPWLSDNCTMIISSIWHSSEV 400
Query: 359 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGT- 417
++SVNV SGE+L I+PA+SNFSW+LLTLD +NI+A+SSSPVDVPQ+KYG ++KA T
Sbjct: 401 LLSVNVLSGEILHISPADSNFSWNLLTLDRNNIVAISSSPVDVPQIKYGMAIEKATSNTT 460
Query: 418 WSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKD 477
WSW N+SSPI RC +KV SLLSS Q SI+ I VK V TKGA K FEAIFV+S K
Sbjct: 461 WSWSNISSPIFRCSDKVVSLLSSLQCSILSISVKDVHDGQTKGATKHFEAIFVTSKTKNK 520
Query: 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537
DPLIV+LHGGPH VSLS +SK LAF SSVGYSLLIVNYRGSLGFGEEALQSLPGKVG
Sbjct: 521 DVFDPLIVILHGGPHDVSLSHFSKYLAFQSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 580
Query: 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 597
SQDVNDVL+AIDHVI++GLA+PSK+TV+G SHGGFLTTHLIGQAPDKFVAAAA NP+CNL
Sbjct: 581 SQDVNDVLSAIDHVINLGLASPSKITVMGISHGGFLTTHLIGQAPDKFVAAAAINPVCNL 640
Query: 598 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 657
ALM+GTTDIPDWCYVE+ G+ K+ FTE PS +DLT F SKSPISH+SKVK PT+FLLGA
Sbjct: 641 ALMIGTTDIPDWCYVEACGTIAKNCFTEPPSADDLTLFQSKSPISHVSKVKAPTLFLLGA 700
Query: 658 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
QD+RVP+ +GLQYARAL+EKGVE K+I+F NDVH ++RPQSD E FL+IG+WF KYCK
Sbjct: 701 QDIRVPIFDGLQYARALKEKGVEVKIIMFQNDVHALKRPQSDLECFLHIGVWFNKYCK 758
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487227|ref|XP_003613901.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515236|gb|AES96859.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/717 (74%), Positives = 614/717 (85%), Gaps = 5/717 (0%)
Query: 1 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV 60
MFS+SQPNLLANK++KF+LS+ ++K ++ SV WAPFPVEMTG S +VPSPSGSKLL+V
Sbjct: 119 MFSVSQPNLLANKKRKFILSSTVNKRSDGSVGLDWAPFPVEMTGVSVMVPSPSGSKLLIV 178
Query: 61 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120
RNPE + +FE+WS S LE EF VPQ+ HGSVYADGWFEGISWNSDET IAYVAEEPSP
Sbjct: 179 RNPEGDGGCKFEIWSNSCLENEFSVPQSKHGSVYADGWFEGISWNSDETRIAYVAEEPSP 238
Query: 121 SKPTFS-LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 179
+KPTF+ G GS DKD +SWKGQGDWEEDWGETYAGKRQP+LFVINI SGEVQAVKG
Sbjct: 239 AKPTFNDQGYKVSGSDDKDSSSWKGQGDWEEDWGETYAGKRQPALFVINITSGEVQAVKG 298
Query: 180 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239
I KSLSVGQVVWAP +EG QYLVFVGWS ETRKLGIKYCYNR CALYAV+ ++S+ +
Sbjct: 299 IDKSLSVGQVVWAPSSEGSAQYLVFVGWSYETRKLGIKYCYNRACALYAVKAP-HESKPN 357
Query: 240 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 299
E E++ ++ED+ + LT++ISSAF PRFSPDG FLVFLSA+SSVDSGAHSAT+SLHRID
Sbjct: 358 ENEIQ--ATEDVQALKLTQTISSAFLPRFSPDGNFLVFLSARSSVDSGAHSATNSLHRID 415
Query: 300 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359
WP + K+ DVIPVV CA+ D FPGLY SSILS+PWLSDG T+++ S+W SSQV+
Sbjct: 416 WPKDVKLYQSAKVHDVIPVVLCADDDGFPGLYFSSILSDPWLSDGHTLIIPSVWHSSQVL 475
Query: 360 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK-ANKGTW 418
+SVNV SG++ RITPA+SNFSWSLLTL G+NI AVSSSPVDVPQVKYG FV+K W
Sbjct: 476 LSVNVFSGQIKRITPADSNFSWSLLTLHGNNIFAVSSSPVDVPQVKYGTFVEKEGGNSEW 535
Query: 419 SWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDC 478
W +VS+PI +C +KV+SLLSS FSIMKI VK S N TKG+ KP+E+IFVSS KK
Sbjct: 536 RWSDVSNPIYKCSDKVRSLLSSLTFSIMKISVKEASENPTKGSCKPYESIFVSSKTKKSD 595
Query: 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538
+CDPLIVVLHGGPHSVSLSS+SKS AFLSS+GYSLLIVNYRGSLGFGEEALQSLPG +GS
Sbjct: 596 ACDPLIVVLHGGPHSVSLSSFSKSQAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGNIGS 655
Query: 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
QDVNDVL+AIDHVID+GLA+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNL
Sbjct: 656 QDVNDVLSAIDHVIDLGLASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLE 715
Query: 599 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 658
LMVGTTDIPDWC+VESYG+ G+D TE+PS EDLT F+SKSPI+H+SKVKTPT+FLLGAQ
Sbjct: 716 LMVGTTDIPDWCFVESYGTNGRDRITEAPSAEDLTLFYSKSPIAHLSKVKTPTVFLLGAQ 775
Query: 659 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
DLRVP+S GLQYARAL+EKGV KVI+FPNDVHGI+RPQSDFESFL+I WF KYCK
Sbjct: 776 DLRVPISTGLQYARALKEKGVPVKVILFPNDVHGIDRPQSDFESFLSIAAWFNKYCK 832
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487225|ref|XP_003613900.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515235|gb|AES96858.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/717 (74%), Positives = 614/717 (85%), Gaps = 5/717 (0%)
Query: 1 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV 60
MFS+SQPNLLANK++KF+LS+ ++K ++ SV WAPFPVEMTG S +VPSPSGSKLL+V
Sbjct: 55 MFSVSQPNLLANKKRKFILSSTVNKRSDGSVGLDWAPFPVEMTGVSVMVPSPSGSKLLIV 114
Query: 61 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120
RNPE + +FE+WS S LE EF VPQ+ HGSVYADGWFEGISWNSDET IAYVAEEPSP
Sbjct: 115 RNPEGDGGCKFEIWSNSCLENEFSVPQSKHGSVYADGWFEGISWNSDETRIAYVAEEPSP 174
Query: 121 SKPTFS-LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 179
+KPTF+ G GS DKD +SWKGQGDWEEDWGETYAGKRQP+LFVINI SGEVQAVKG
Sbjct: 175 AKPTFNDQGYKVSGSDDKDSSSWKGQGDWEEDWGETYAGKRQPALFVINITSGEVQAVKG 234
Query: 180 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239
I KSLSVGQVVWAP +EG QYLVFVGWS ETRKLGIKYCYNR CALYAV+ ++S+ +
Sbjct: 235 IDKSLSVGQVVWAPSSEGSAQYLVFVGWSYETRKLGIKYCYNRACALYAVKAP-HESKPN 293
Query: 240 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 299
E E++ ++ED+ + LT++ISSAF PRFSPDG FLVFLSA+SSVDSGAHSAT+SLHRID
Sbjct: 294 ENEIQ--ATEDVQALKLTQTISSAFLPRFSPDGNFLVFLSARSSVDSGAHSATNSLHRID 351
Query: 300 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359
WP + K+ DVIPVV CA+ D FPGLY SSILS+PWLSDG T+++ S+W SSQV+
Sbjct: 352 WPKDVKLYQSAKVHDVIPVVLCADDDGFPGLYFSSILSDPWLSDGHTLIIPSVWHSSQVL 411
Query: 360 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK-ANKGTW 418
+SVNV SG++ RITPA+SNFSWSLLTL G+NI AVSSSPVDVPQVKYG FV+K W
Sbjct: 412 LSVNVFSGQIKRITPADSNFSWSLLTLHGNNIFAVSSSPVDVPQVKYGTFVEKEGGNSEW 471
Query: 419 SWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDC 478
W +VS+PI +C +KV+SLLSS FSIMKI VK S N TKG+ KP+E+IFVSS KK
Sbjct: 472 RWSDVSNPIYKCSDKVRSLLSSLTFSIMKISVKEASENPTKGSCKPYESIFVSSKTKKSD 531
Query: 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538
+CDPLIVVLHGGPHSVSLSS+SKS AFLSS+GYSLLIVNYRGSLGFGEEALQSLPG +GS
Sbjct: 532 ACDPLIVVLHGGPHSVSLSSFSKSQAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGNIGS 591
Query: 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
QDVNDVL+AIDHVID+GLA+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNL
Sbjct: 592 QDVNDVLSAIDHVIDLGLASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLE 651
Query: 599 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 658
LMVGTTDIPDWC+VESYG+ G+D TE+PS EDLT F+SKSPI+H+SKVKTPT+FLLGAQ
Sbjct: 652 LMVGTTDIPDWCFVESYGTNGRDRITEAPSAEDLTLFYSKSPIAHLSKVKTPTVFLLGAQ 711
Query: 659 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
DLRVP+S GLQYARAL+EKGV KVI+FPNDVHGI+RPQSDFESFL+I WF KYCK
Sbjct: 712 DLRVPISTGLQYARALKEKGVPVKVILFPNDVHGIDRPQSDFESFLSIAAWFNKYCK 768
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487229|ref|XP_003613902.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515237|gb|AES96860.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/765 (64%), Positives = 590/765 (77%), Gaps = 51/765 (6%)
Query: 1 MFSISQPNLLANKRKKFMLST--VISKENENSVTFQWAPFPVEMTG-ASAVVPSPSGSKL 57
MFSI+QP++L NK K +LS V K + + V F WAPFP+EM G S +VPSPSGSKL
Sbjct: 47 MFSITQPDVLTNKNKTLILSCNFVKQKSDGSVVEFLWAPFPIEMRGDVSMIVPSPSGSKL 106
Query: 58 LVVRNPENES--PIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 115
LV+RN ++E FE+WS S LEKEF +PQ++HGSVY DGWFEG+SWN DETLIAYVA
Sbjct: 107 LVIRNSDSEGGGSCCFEIWSSSCLEKEFSIPQSMHGSVYNDGWFEGVSWNLDETLIAYVA 166
Query: 116 EEPSPSKPTFS-LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV 174
E PSP+KP F+ G KGG ++ D WKGQG+WEEDWGETYA KRQP+LFVININSGEV
Sbjct: 167 EAPSPTKPVFNNTGYKKGGCAENDFGIWKGQGEWEEDWGETYAAKRQPTLFVININSGEV 226
Query: 175 QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 234
QAVKGI KSLS GQVVWAP EG QYLVFVGWSS TRKLG+KYC NRPCALYAVR +
Sbjct: 227 QAVKGIDKSLSAGQVVWAPFTEGSEQYLVFVGWSSGTRKLGMKYCSNRPCALYAVRAPHH 286
Query: 235 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDS 294
+S++ E E SS+E+L +NLT +ISSA FPRFSP+GKFLVFLSAKS+V+SG H+AT+S
Sbjct: 287 ESQSEEPE-HHSSTEELHALNLTPTISSALFPRFSPNGKFLVFLSAKSAVNSGVHNATNS 345
Query: 295 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 354
LHRIDWPT+G I D+IPVV CAE CFPGLY +++ +NPWLSD CTM+LSSIW
Sbjct: 346 LHRIDWPTDGKLYQSANIYDIIPVVMCAEDGCFPGLYCTTVHNNPWLSDNCTMILSSIWH 405
Query: 355 SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKAN 414
S +V++SVNV SG++LRI+PA+SNFSW+LLTLD DNI+A+SS+PV+VPQ+ YG ++K
Sbjct: 406 SCEVLLSVNVLSGKILRISPADSNFSWNLLTLDEDNILAISSNPVNVPQIMYGMAIEKTK 465
Query: 415 -KGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSS 473
WSW +SSPI +C +KV+SLLSS Q SI+KIPV S+N TKGA KPFEAIFVSS
Sbjct: 466 GNSIWSWSKISSPILKCSDKVRSLLSSIQCSILKIPVTDGSSNTTKGAAKPFEAIFVSSK 525
Query: 474 HKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSL-------------------- 513
K DPLIV+LHGGP VS S +S S AFLSSVGYSL
Sbjct: 526 TKNKDVFDPLIVILHGGPQDVSSSHFSNSWAFLSSVGYSLDLVGTCILQHQNHSIKACLE 585
Query: 514 -----------LIVNY------------RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDH 550
+I+++ RGSLGFGEEALQSLPGKVGSQDVNDVL+AIDH
Sbjct: 586 KKRKTKNTAPCIIISFKDSYKFTTLLFLRGSLGFGEEALQSLPGKVGSQDVNDVLSAIDH 645
Query: 551 VIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC 610
VI++G A+PSK+TV+G SHGGFLTTHLIGQAP+KFVAAAA NP+CNLA+MVGTTDIPDWC
Sbjct: 646 VINLGHASPSKITVMGISHGGFLTTHLIGQAPEKFVAAAAINPVCNLAMMVGTTDIPDWC 705
Query: 611 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 670
YVE++G+ +D F+E+PS EDLT F+SKSPISH+SKVK PT+FLLG QDLRVP +GLQY
Sbjct: 706 YVEAFGTTARDCFSEAPSAEDLTLFYSKSPISHVSKVKAPTLFLLGGQDLRVPKFDGLQY 765
Query: 671 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
ARAL+EKGV+ K+I+F NDVH ++RPQS++E LNIG+WF KYCK
Sbjct: 766 ARALKEKGVDVKIIMFQNDVHALKRPQSEWECILNIGVWFNKYCK 810
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115482018|ref|NP_001064602.1| Os10g0415600 [Oryza sativa Japonica Group] gi|113639211|dbj|BAF26516.1| Os10g0415600 [Oryza sativa Japonica Group] gi|218184517|gb|EEC66944.1| hypothetical protein OsI_33573 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/721 (63%), Positives = 565/721 (78%), Gaps = 16/721 (2%)
Query: 1 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV 60
+ S+ Q +LLANK++ F+L++ ISK + NSV FQW+PFP+EM+G SAV+PSPSG KLL++
Sbjct: 60 IVSVGQTDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLI 119
Query: 61 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120
RN E++SP + E+W QLE E H+ Q+VHGS+Y D WFEGISWN +ETL+AYVAEEP
Sbjct: 120 RNSEDDSPTKLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQ 179
Query: 121 SKPTFS-LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 179
KP F+ G K GSS+KDC SWKG+GDWEE WGETY+ KR P+LFV+NI+SGEV+AVKG
Sbjct: 180 PKPEFNDSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKG 239
Query: 180 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET------RKLGIKYCYNRPCALYAVRVSL 233
IP++LSVGQV+WAP + LVFV WSS+ RKLGIKYC+NRPCALYAV
Sbjct: 240 IPRTLSVGQVIWAPSSS---HSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVP-DP 295
Query: 234 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 293
+ EA + L S E P LT +SSAFFPRFSPDGK+LVF+SAKS++DSG H+AT+
Sbjct: 296 FMEEADKPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATN 355
Query: 294 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 353
S+H+IDWP +G L + DV+P+V C + CFPGLY S IL NPWL+DG TM+LSSIW
Sbjct: 356 SMHKIDWPADGKLEGLS-VADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIW 414
Query: 354 GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413
GS +VI+SVNV S E+ R++P +S++SW++L LD DNI+AVSSS + VPQ+ YG V +
Sbjct: 415 GSKEVILSVNVVSREVSRVSPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQT 474
Query: 414 NK-GTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSS 472
K W W +++P +K+ ++L+ +FSI+KIP+ S L GA+ PFEAIFVS
Sbjct: 475 GKPNQWEWQEIATPFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVS- 533
Query: 473 SHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 532
KD + P IVVLHGGPH+V SSYSKSLAFL S GY+LL+VNYRGSLGFGEEALQSL
Sbjct: 534 --WKDSATRPTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSL 591
Query: 533 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 592
PG +GSQDVNDVLTA+D VI GL + SKV VVGGSHGGFLTTHLIGQAP FVAAAARN
Sbjct: 592 PGNIGSQDVNDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARN 651
Query: 593 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 652
P+CNL+LMVGTTDIP+WC+VE YG +GK+ F+E PS +DL +FH KSPISHISKV TPT+
Sbjct: 652 PVCNLSLMVGTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTL 711
Query: 653 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712
FLLGAQDLRVPVSNGLQYAR L+E GVETK+IVFP D+HG+++PQSDFESFLNIG+WFKK
Sbjct: 712 FLLGAQDLRVPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQSDFESFLNIGVWFKK 771
Query: 713 Y 713
+
Sbjct: 772 H 772
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|78708638|gb|ABB47613.1| prolyl oligopeptidase family protein, expressed [Oryza sativa Japonica Group] gi|222612829|gb|EEE50961.1| hypothetical protein OsJ_31520 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/721 (63%), Positives = 565/721 (78%), Gaps = 16/721 (2%)
Query: 1 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV 60
+ S+ Q +LLANK++ F+L++ ISK + NSV FQW+PFP+EM+G SAV+PSPSG KLL++
Sbjct: 124 IVSVGQTDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLI 183
Query: 61 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120
RN E++SP + E+W QLE E H+ Q+VHGS+Y D WFEGISWN +ETL+AYVAEEP
Sbjct: 184 RNSEDDSPTKLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQ 243
Query: 121 SKPTFS-LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 179
KP F+ G K GSS+KDC SWKG+GDWEE WGETY+ KR P+LFV+NI+SGEV+AVKG
Sbjct: 244 PKPEFNDSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKG 303
Query: 180 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET------RKLGIKYCYNRPCALYAVRVSL 233
IP++LSVGQV+WAP + LVFV WSS+ RKLGIKYC+NRPCALYAV
Sbjct: 304 IPRTLSVGQVIWAPSSS---HSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVP-DP 359
Query: 234 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 293
+ EA + L S E P LT +SSAFFPRFSPDGK+LVF+SAKS++DSG H+AT+
Sbjct: 360 FMEEADKPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATN 419
Query: 294 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 353
S+H+IDWP +G L + DV+P+V C + CFPGLY S IL NPWL+DG TM+LSSIW
Sbjct: 420 SMHKIDWPADGKLEGLS-VADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIW 478
Query: 354 GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413
GS +VI+SVNV S E+ R++P +S++SW++L LD DNI+AVSSS + VPQ+ YG V +
Sbjct: 479 GSKEVILSVNVVSREVSRVSPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQT 538
Query: 414 NK-GTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSS 472
K W W +++P +K+ ++L+ +FSI+KIP+ S L GA+ PFEAIFVS
Sbjct: 539 GKPNQWEWQEIATPFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVS- 597
Query: 473 SHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 532
KD + P IVVLHGGPH+V SSYSKSLAFL S GY+LL+VNYRGSLGFGEEALQSL
Sbjct: 598 --WKDSATRPTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSL 655
Query: 533 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 592
PG +GSQDVNDVLTA+D VI GL + SKV VVGGSHGGFLTTHLIGQAP FVAAAARN
Sbjct: 656 PGNIGSQDVNDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARN 715
Query: 593 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 652
P+CNL+LMVGTTDIP+WC+VE YG +GK+ F+E PS +DL +FH KSPISHISKV TPT+
Sbjct: 716 PVCNLSLMVGTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTL 775
Query: 653 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712
FLLGAQDLRVPVSNGLQYAR L+E GVETK+IVFP D+HG+++PQSDFESFLNIG+WFKK
Sbjct: 776 FLLGAQDLRVPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQSDFESFLNIGVWFKK 835
Query: 713 Y 713
+
Sbjct: 836 H 836
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42566792|ref|NP_193193.2| acylaminoacyl-peptidase [Arabidopsis thaliana] gi|60729672|pir||JC8016 acylaminoacyl-peptidase (EC 3.4.19.1) - Arabidopsis thaliana gi|30466066|dbj|BAC76411.1| acylamino acid-releasing enzyme [Arabidopsis thaliana] gi|332658061|gb|AEE83461.1| acylaminoacyl-peptidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/719 (66%), Positives = 583/719 (81%), Gaps = 14/719 (1%)
Query: 1 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV 60
MF++SQ NLLANK+KKFMLS IS E+ SV F WAPFP+EMTGASA VPSPSG KLLV+
Sbjct: 55 MFALSQANLLANKKKKFMLSGHISNESNQSVNFHWAPFPIEMTGASAFVPSPSGLKLLVI 114
Query: 61 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120
RNPENESP +FE+W+ SQLEKEFH+PQ VHGSVY DGWFEGISW+SDET +AYVAEEPS
Sbjct: 115 RNPENESPTKFEIWNSSQLEKEFHIPQKVHGSVYVDGWFEGISWDSDETHVAYVAEEPSR 174
Query: 121 SKPTFS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 178
KPTF LG K +S DK SWKG+GDWEE+WGE YAGKRQP+LFVIN++SGEV+ +K
Sbjct: 175 PKPTFDHLGYYKKENSLDKGIGSWKGEGDWEEEWGEAYAGKRQPALFVINVDSGEVEPIK 234
Query: 179 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238
GIP+S+SVGQVVW+P + G QYLVF GW + RK GIKYCYNRPCA+YA++ +
Sbjct: 235 GIPRSISVGQVVWSPNSNGSAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIKFT------ 288
Query: 239 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 298
E K+ + + P+ NLT+SISS F PRFS DGKFLVF+SAK++VDSGAH AT+SLHRI
Sbjct: 289 -SDEPKDDDANEFPIHNLTKSISSGFCPRFSKDGKFLVFVSAKTAVDSGAHWATESLHRI 347
Query: 299 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 358
DWP++G IVDVI VV C + CFPGLY + +LS+PWLSDG +++LS+ W S +V
Sbjct: 348 DWPSDGKLPESTNIVDVIQVVNCPKDGCFPGLYVTGLLSDPWLSDGHSLMLSTYWRSCRV 407
Query: 359 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF-VDKANKGT 417
I+SVN+ SGE+ R +P++S++SW+ L LDGD+I+AVSSSPV VP++KYG +D A K +
Sbjct: 408 ILSVNLLSGEVSRASPSDSDYSWNALALDGDSIVAVSSSPVSVPEIKYGKKGLDSAGKPS 467
Query: 418 WSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSH-KK 476
W W N+ SPI R EKV + LSS QF I+K+P+ VS L +GA+ P EAI+VSSS K+
Sbjct: 468 WLWSNIQSPI-RYSEKVMAGLSSLQFKILKVPISDVSEGLAEGAKNPIEAIYVSSSKSKE 526
Query: 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536
+ CDPLI VLHGGPHSVS S+S+++A+LSS+GYS LI+NYRGSLG+GE+ALQSLPGKV
Sbjct: 527 NGKCDPLIAVLHGGPHSVSPCSFSRTMAYLSSIGYSQLIINYRGSLGYGEDALQSLPGKV 586
Query: 537 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 596
GSQDV D L A+DH I+MG+A+PS++TV+GGSHGGFLTTHLIGQAPDKFVAAAARNP+CN
Sbjct: 587 GSQDVKDCLLAVDHAIEMGIADPSRITVLGGSHGGFLTTHLIGQAPDKFVAAAARNPVCN 646
Query: 597 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLG 656
+A MVG TDIPDWC+ E+YG + +TE+PS EDL+RFH SPISHISKVKTPT+FLLG
Sbjct: 647 MASMVGITDIPDWCFFEAYGDQSH--YTEAPSAEDLSRFHQMSPISHISKVKTPTLFLLG 704
Query: 657 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
+DLRVP+SNG QY RAL+EKGVE KV+VFPND H ++RPQ+D+ESFLNI +WF KYCK
Sbjct: 705 TKDLRVPISNGFQYVRALKEKGVEVKVLVFPNDNHPLDRPQTDYESFLNIAVWFNKYCK 763
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 715 | ||||||
| TAIR|locus:2129920 | 764 | AARE "acylamino acid-releasing | 0.986 | 0.922 | 0.635 | 1.4e-254 | |
| UNIPROTKB|E2R7E8 | 734 | APEH "Uncharacterized protein" | 0.534 | 0.520 | 0.339 | 6.3e-89 | |
| MGI|MGI:88041 | 732 | Apeh "acylpeptide hydrolase" [ | 0.534 | 0.521 | 0.341 | 8e-89 | |
| UNIPROTKB|P80227 | 730 | APEH "Acylamino-acid-releasing | 0.588 | 0.576 | 0.331 | 1.3e-88 | |
| RGD|2125 | 732 | Apeh "N-acylaminoacyl-peptide | 0.534 | 0.521 | 0.339 | 3.5e-88 | |
| UNIPROTKB|P13676 | 732 | Apeh "Acylamino-acid-releasing | 0.534 | 0.521 | 0.339 | 3.5e-88 | |
| UNIPROTKB|I3LEU6 | 725 | I3LEU6 "Uncharacterized protei | 0.588 | 0.580 | 0.323 | 1.7e-86 | |
| UNIPROTKB|P13798 | 732 | APEH "Acylamino-acid-releasing | 0.539 | 0.527 | 0.330 | 4.4e-86 | |
| UNIPROTKB|F1SPS7 | 732 | APEH "Acylamino-acid-releasing | 0.534 | 0.521 | 0.326 | 4.4e-86 | |
| UNIPROTKB|I3LFX8 | 702 | I3LFX8 "Uncharacterized protei | 0.534 | 0.544 | 0.326 | 5.7e-86 |
| TAIR|locus:2129920 AARE "acylamino acid-releasing enzyme" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2451 (867.9 bits), Expect = 1.4e-254, P = 1.4e-254
Identities = 457/719 (63%), Positives = 554/719 (77%)
Query: 1 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV 60
MF++SQ NLLANK+KKFMLS IS E+ SV F WAPFP+EMTGASA VPSPSG KLLV+
Sbjct: 55 MFALSQANLLANKKKKFMLSGHISNESNQSVNFHWAPFPIEMTGASAFVPSPSGLKLLVI 114
Query: 61 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120
RNPENESP +FE+W+ SQLEKEFH+PQ VHGSVY DGWFEGISW+SDET +AYVAEEPS
Sbjct: 115 RNPENESPTKFEIWNSSQLEKEFHIPQKVHGSVYVDGWFEGISWDSDETHVAYVAEEPSR 174
Query: 121 SKPTFS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 178
KPTF LG K +S DK SWKG+GDWEE+WGE YAGKRQP+LFVIN++SGEV+ +K
Sbjct: 175 PKPTFDHLGYYKKENSLDKGIGSWKGEGDWEEEWGEAYAGKRQPALFVINVDSGEVEPIK 234
Query: 179 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYXXXX 238
GIP+S+SVGQVVW+P + G QYLVF GW + RK GIKYCYNRPCA+YA++ +
Sbjct: 235 GIPRSISVGQVVWSPNSNGSAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIKFT------ 288
Query: 239 XXXXXXXXXXXDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 298
+ P+ NLT+SISS F PRFS DGKFLVF+SAK++VDSGAH AT+SLHRI
Sbjct: 289 -SDEPKDDDANEFPIHNLTKSISSGFCPRFSKDGKFLVFVSAKTAVDSGAHWATESLHRI 347
Query: 299 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXX 358
DWP++G IVDVI VV C + CFPGLY + +LS+PWLSDG +++LS+ W
Sbjct: 348 DWPSDGKLPESTNIVDVIQVVNCPKDGCFPGLYVTGLLSDPWLSDGHSLMLSTYWRSCRV 407
Query: 359 XXXXXXXXGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF-VDKANKGT 417
GE+ R +P++S++SW+ L LDGD+I+AVSSSPV VP++KYG +D A K +
Sbjct: 408 ILSVNLLSGEVSRASPSDSDYSWNALALDGDSIVAVSSSPVSVPEIKYGKKGLDSAGKPS 467
Query: 418 WSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKD 477
W W N+ SPI R EKV + LSS QF I+K+P+ VS L +GA+ P EAI+VSSS K+
Sbjct: 468 WLWSNIQSPI-RYSEKVMAGLSSLQFKILKVPISDVSEGLAEGAKNPIEAIYVSSSKSKE 526
Query: 478 CS-CDPLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKV 536
CDPLI VLHGGPH +GYS LI+NYRGSLG+GE+ALQSLPGKV
Sbjct: 527 NGKCDPLIAVLHGGPHSVSPCSFSRTMAYLSSIGYSQLIINYRGSLGYGEDALQSLPGKV 586
Query: 537 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 596
GSQDV D L A+DH I+MG+A+PS++TV+GGSHGGFLTTHLIGQAPDKFVAAAARNP+CN
Sbjct: 587 GSQDVKDCLLAVDHAIEMGIADPSRITVLGGSHGGFLTTHLIGQAPDKFVAAAARNPVCN 646
Query: 597 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLG 656
+A MVG TDIPDWC+ E+YG + +TE+PS EDL+RFH SPISHISKVKTPT+FLLG
Sbjct: 647 MASMVGITDIPDWCFFEAYGDQSH--YTEAPSAEDLSRFHQMSPISHISKVKTPTLFLLG 704
Query: 657 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
+DLRVP+SNG QY RAL+EKGVE KV+VFPND H ++RPQ+D+ESFLNI +WF KYCK
Sbjct: 705 TKDLRVPISNGFQYVRALKEKGVEVKVLVFPNDNHPLDRPQTDYESFLNIAVWFNKYCK 763
|
|
| UNIPROTKB|E2R7E8 APEH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
Identities = 135/398 (33%), Positives = 211/398 (53%)
Query: 312 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 371
+VDV+P Q E F G+Y S + W +D ++ S G +
Sbjct: 346 VVDVVPR-QLGEN--FSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFVVDTQMGSVTS 402
Query: 372 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 431
+T S SW LLT+D D ++A S+P P +K G+ + T W+++
Sbjct: 403 LTAGGSGGSWKLLTIDRDLMVAQFSTPSLPPSLKVGFLPPAGKEQTVLWVSLEEA----- 457
Query: 432 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 491
E + + S +++ P + + A FEAI + S+ D + P++V+ HGGP
Sbjct: 458 EPISDI--SWAIRVLQPPPEQENVQF---AGLDFEAILLQPSNPPDKTQVPMVVMPHGGP 512
Query: 492 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 551
H +G+++L+VNYRGS GFG++++ SLPGKVG QDV DV A++ V
Sbjct: 513 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGKVGHQDVKDVQFAVEQV 572
Query: 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 611
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 573 LQEEHFDADRVALMGGSHGGFLSCHLIGQYPETYRACVARNPVINIASMMGSTDIPDWCV 632
Query: 612 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 671
VE+ D P + KSPI + +VKTP + +LG +D RVP G++Y
Sbjct: 633 VEAGFPYSSDCL---PDLSVWAEMLDKSPIKYTPQVKTPLLLMLGQEDRRVPFKQGMEYY 689
Query: 672 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 709
RAL+ + V +++++P H + + + +SF+N LW
Sbjct: 690 RALKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 727
|
|
| MGI|MGI:88041 Apeh "acylpeptide hydrolase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 8.0e-89, Sum P(2) = 8.0e-89
Identities = 136/398 (34%), Positives = 213/398 (53%)
Query: 312 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 371
+VD++P Q G+ F G+Y S + W +D ++ S+ G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSVQRSRQDLFAVDTQTGSVTS 400
Query: 372 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 431
+T S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAGGSAGSWKLLTIDRDLMVAQFSTPNLPPSLKVGFLPPAGKEQSVSWVSLEEA----- 455
Query: 432 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 491
E + + + I + N+ + A FEAI + S+ D S P++V+ HGGP
Sbjct: 456 EPIPDI----HWGIRVLHPPPDQENV-QYADLDFEAILLQPSNSPDKSQVPMVVMPHGGP 510
Query: 492 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 551
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A+ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVQQV 570
Query: 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 611
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+ M+GTTDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIVSMMGTTDIPDWCM 630
Query: 612 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 671
VE+ G + + P + L KSPI +I +VKTP + +LG +D RVP GL+Y
Sbjct: 631 VET-GFPYSNDYL--PDLNVLEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGLEYY 687
Query: 672 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 709
AL+ + V +++++P H + + + +SF+N LW
Sbjct: 688 HALKARNVPVRLLLYPKSTHALSEVEVESDSFMNTVLW 725
|
|
| UNIPROTKB|P80227 APEH "Acylamino-acid-releasing enzyme" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
Identities = 147/444 (33%), Positives = 228/444 (51%)
Query: 266 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 325
PR SPD +V+L S V H L DW T +VDV+P Q E
Sbjct: 303 PRLSPDQCRIVYLQFPSLVP---HQQCGQLCLYDWYTRVTVV----VVDVVPR-QLGEN- 353
Query: 326 CFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLRITPAESNFSWSLLT 385
F G+Y S + W +D ++ + G + +T S SW LLT
Sbjct: 354 -FSGIYCSLLPLGCWSADSQRVVFDTAQRSRQDLFAVDTQMGTVTPLTAGGSGGSWKLLT 412
Query: 386 LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSI 445
+D D ++A S+P P +K G+ + W+++ E + + S +
Sbjct: 413 IDRDLMVAQFSTPNLPPCLKVGFLPPAGMEQEVVWVSLEEA-----EPIPDI--SWSIRV 465
Query: 446 MKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHXXXXXXXXXXXXX 505
++ P + A G FEAI + S+ D + P++V+ HGGPH
Sbjct: 466 LQPPPEQEHAQYV-GLD--FEAILIQPSNPPDKTQVPMVVMPHGGPHSSFVTSWMLLPAM 522
Query: 506 XXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVV 565
+G++ L+VNYRGS GFG++++ SLPG VGSQDV DV A++ V+ + +V ++
Sbjct: 523 LCKMGFAALLVNYRGSTGFGQDSILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALL 582
Query: 566 GGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTE 625
GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC VE+ D +
Sbjct: 583 GGSHGGFLSCHLIGQYPETYGACVVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCLPD 642
Query: 626 SPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 685
P+V + +KSPI + +VKTP + +LG +D RVP G++Y RAL+ + V ++++
Sbjct: 643 -PNV--WSEMLNKSPIKYTPQVKTPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLL 699
Query: 686 FPNDVHGIERPQSDFESFLNIGLW 709
+P H + + + +SF+N +W
Sbjct: 700 YPKSTHSLSEVEVESDSFMNAVIW 723
|
|
| RGD|2125 Apeh "N-acylaminoacyl-peptide hydrolase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 135/398 (33%), Positives = 216/398 (54%)
Query: 312 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 371
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQTGSITS 400
Query: 372 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 431
+T A S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLPPPGKEQSVSWVSLEEA----- 455
Query: 432 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 491
E + + + + + N+ + A FEAI + S+ D + P++V+ HGGP
Sbjct: 456 EPIPGI----HWGVRVLHPPPDQENV-QYADLDFEAILLQPSNPPDKTQVPMVVMPHGGP 510
Query: 492 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 551
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 611
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIASMMGSTDIPDWCM 630
Query: 612 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 671
VE+ G +S P + KSPI +I +VKTP + +LG +D RVP G++Y
Sbjct: 631 VET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGMEYY 687
Query: 672 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 709
RAL+ + V +++++P H + +++ +SF+N LW
Sbjct: 688 RALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVLW 725
|
|
| UNIPROTKB|P13676 Apeh "Acylamino-acid-releasing enzyme" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 135/398 (33%), Positives = 216/398 (54%)
Query: 312 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 371
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQTGSITS 400
Query: 372 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 431
+T A S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLPPPGKEQSVSWVSLEEA----- 455
Query: 432 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 491
E + + + + + N+ + A FEAI + S+ D + P++V+ HGGP
Sbjct: 456 EPIPGI----HWGVRVLHPPPDQENV-QYADLDFEAILLQPSNPPDKTQVPMVVMPHGGP 510
Query: 492 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 551
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 611
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIASMMGSTDIPDWCM 630
Query: 612 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 671
VE+ G +S P + KSPI +I +VKTP + +LG +D RVP G++Y
Sbjct: 631 VET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGMEYY 687
Query: 672 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 709
RAL+ + V +++++P H + +++ +SF+N LW
Sbjct: 688 RALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVLW 725
|
|
| UNIPROTKB|I3LEU6 I3LEU6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 146/452 (32%), Positives = 228/452 (50%)
Query: 266 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 325
PR SPD +V+L S V H L DW T +S+ +VD++P Q G+
Sbjct: 290 PRLSPDQCRIVYLRFPSLVP---HQQCGQLCLYDWYTR--VTSV--VVDIVPR-QL--GE 339
Query: 326 CFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLRIT------PAE--S 377
F G+Y S + W +D ++ S G + +T P + S
Sbjct: 340 DFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTSLTAGLMVLPLKWGS 399
Query: 378 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSL 437
SW LLT+D D ++ S+P P +K G+ + SW+++ E +
Sbjct: 400 GGSWKLLTIDRDLMVLQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA-----EPFPDI 454
Query: 438 LSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHXXXXX 497
S +++ P + A FEAI + S+ + + P++V+ HGGPH
Sbjct: 455 --SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGPHSSFVT 509
Query: 498 XXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557
+G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V+
Sbjct: 510 AWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHF 569
Query: 558 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 617
+ +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC VE+ S
Sbjct: 570 DAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCMVEAGFS 629
Query: 618 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 677
D P + KSPI + +VKTP + +LG +D RVP G++Y R L+ +
Sbjct: 630 YSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGMEYYRVLKAR 686
Query: 678 GVETKVIVFPNDVHGIERPQSDFESFLNIGLW 709
V +++++P H + + + +SF+N LW
Sbjct: 687 NVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 718
|
|
| UNIPROTKB|P13798 APEH "Acylamino-acid-releasing enzyme" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 133/402 (33%), Positives = 210/402 (52%)
Query: 312 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 371
+VDV+P Q E F G+Y S + W +D ++ S G +
Sbjct: 344 VVDVVPR-QLGEN--FSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQVGTVTS 400
Query: 372 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 431
+T S SW LLT+D D ++A S+P P +K G+ + + W+++
Sbjct: 401 LTAGGSGGSWKLLTIDQDLMVAQFSTPSLPPTLKVGFLPSAGKEQSVLWVSLEEA----- 455
Query: 432 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 491
E + + + I + N+ + A FEAI + D + P++V+ HGGP
Sbjct: 456 EPIPDI----HWGIRVLQPPPEQENV-QYAGLDFEAILLQPGSPPDKTQVPMVVMPHGGP 510
Query: 492 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 551
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 611
+ + S V ++GGSHGGF++ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRACVARNPVINIASMLGSTDIPDWCV 630
Query: 612 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 671
VE+ D P + KSPI +I +VKTP + +LG +D RVP G++Y
Sbjct: 631 VEAGFPFSSDCL---PDLSVWAEMLDKSPIRYIPQVKTPLLLMLGQEDRRVPFKQGMEYY 687
Query: 672 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713
RAL+ + V +++++P H + + + +SF+N LW + +
Sbjct: 688 RALKTRNVPVRLLLYPKSTHALSEVEVESDSFMNAVLWLRTH 729
|
|
| UNIPROTKB|F1SPS7 APEH "Acylamino-acid-releasing enzyme" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 594 (214.2 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 130/398 (32%), Positives = 207/398 (52%)
Query: 312 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 371
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GEDFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTS 400
Query: 372 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 431
+T S SW LLT+D D ++ S+P P +K G+ + SW+++
Sbjct: 401 LTAGGSGGSWKLLTIDRDLMVVQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA----- 455
Query: 432 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 491
E + S +++ P + A FEAI + S+ + + P++V+ HGGP
Sbjct: 456 EPFPDI--SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGP 510
Query: 492 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 551
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 611
+ + +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCM 630
Query: 612 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 671
VE+ S D P + KSPI + +VKTP + +LG +D RVP G++Y
Sbjct: 631 VEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGMEYY 687
Query: 672 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 709
R L+ + V +++++P H + + + +SF+N LW
Sbjct: 688 RVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 725
|
|
| UNIPROTKB|I3LFX8 I3LFX8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 130/398 (32%), Positives = 207/398 (52%)
Query: 312 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 371
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 314 VVDIVPR-QL--GEDFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTS 370
Query: 372 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 431
+T S SW LLT+D D ++ S+P P +K G+ + SW+++
Sbjct: 371 LTAGGSGGSWKLLTIDRDLMVLQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA----- 425
Query: 432 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 491
E + S +++ P + A FEAI + S+ + + P++V+ HGGP
Sbjct: 426 EPFPDI--SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGP 480
Query: 492 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 551
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 481 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 540
Query: 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 611
+ + +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC
Sbjct: 541 LQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCM 600
Query: 612 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 671
VE+ S D P + KSPI + +VKTP + +LG +D RVP G++Y
Sbjct: 601 VEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGMEYY 657
Query: 672 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 709
R L+ + V +++++P H + + + +SF+N LW
Sbjct: 658 RVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 695
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8R146 | APEH_MOUSE | 3, ., 4, ., 1, 9, ., 1 | 0.3337 | 0.9272 | 0.9057 | yes | no |
| P13798 | ACPH_HUMAN | 3, ., 4, ., 1, 9, ., 1 | 0.3144 | 0.9272 | 0.9057 | yes | no |
| P19205 | ACPH_PIG | 3, ., 4, ., 1, 9, ., 1 | 0.3218 | 0.9202 | 0.8989 | yes | no |
| P80227 | ACPH_BOVIN | 3, ., 4, ., 1, 9, ., 1 | 0.3240 | 0.9202 | 0.9013 | yes | no |
| P13676 | ACPH_RAT | 3, ., 4, ., 1, 9, ., 1 | 0.3268 | 0.9272 | 0.9057 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 715 | |||
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 8e-45 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 5e-33 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 4e-11 | |
| COG0657 | 312 | COG0657, Aes, Esterase/lipase [Lipid metabolism] | 4e-09 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 5e-09 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 6e-09 | |
| COG0412 | 236 | COG0412, COG0412, Dienelactone hydrolase and relat | 4e-08 | |
| COG0596 | 282 | COG0596, MhpC, Predicted hydrolases or acyltransfe | 1e-04 | |
| pfam07859 | 207 | pfam07859, Abhydrolase_3, alpha/beta hydrolase fol | 1e-04 | |
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 2e-04 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 3e-04 | |
| pfam01738 | 215 | pfam01738, DLH, Dienelactone hydrolase family | 6e-04 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 170 bits (431), Expect = 8e-45
Identities = 114/467 (24%), Positives = 186/467 (39%), Gaps = 52/467 (11%)
Query: 249 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 308
+ + +LT S F DGK + L +S L +G+ SS
Sbjct: 204 GNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSS 263
Query: 309 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 368
+ V +GD GL + GSS + V
Sbjct: 264 GDDTRGAWAVEGGLDGD---GLLFIAT---------------DGGGSSPLF---RVDDLG 302
Query: 369 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPIS 428
+ + +DG + SSP P Y Y + K ++S +
Sbjct: 303 GGVEGLSGDDGGVPGFDVDGRKLALAYSSP-TEPPEIYLYDRGEEAK-------LTSSNN 354
Query: 429 RCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLH 488
+KVK L + + + L K KK PLIV +H
Sbjct: 355 SGLKKVK-LAEPEPVTYKSNDGETIHGWLYKPPGFDPR--------KKY----PLIVYIH 401
Query: 489 GGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI 548
GGP + S++ + L+S GY++L NYRGS G+G E ++ G G D+ D++ A+
Sbjct: 402 GGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAV 461
Query: 549 DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 608
D ++ + L +P ++ + GGS+GG++T + P F AA A + L G +
Sbjct: 462 DALVKLPLVDPERIGITGGSYGGYMTLLAATKTPR-FKAAVAVAGGVDWLLYFGESTEGL 520
Query: 609 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 668
E G + D ++ +SPI + +KTP + + G +D RVP+
Sbjct: 521 RFDPEENGGGPPE---------DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAE 571
Query: 669 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
Q AL+ KG +++VFP++ HG RP++ + I WFK++ K
Sbjct: 572 QLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLK 618
|
Length = 620 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 5e-33
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 498 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557
S+S +L L+ GY + + N RGS G+G + G +G + +D + A +++I G
Sbjct: 2 SFSWNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGYV 61
Query: 558 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 617
+P ++ + GGS+GG+LT + Q PD F AA A P+ + + + E Y
Sbjct: 62 DPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVD---WLTYMSDTSP-FTERYME 117
Query: 618 KGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARALR 675
G ++ + SP S VK P + + G D RVP + L+ AL+
Sbjct: 118 WG-------NPWDNEEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDRVPPAEALKLVAALQ 170
Query: 676 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713
KG +++FP++ HG +P++ E + + K
Sbjct: 171 AKGKNVLLLIFPDEGHGGGKPRNKREEYARELAFLLKV 208
|
Length = 212 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-11
Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 36/216 (16%)
Query: 484 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 543
+V+LHG S S+ L++ GY +L + G G+ D D
Sbjct: 1 VVLLHGAGGSAE--SWRPLAEALAA-GYRVLAPDLPG---HGDSDGPPRTPYSLEDDAAD 54
Query: 544 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 603
+ +D + V +VG S GG + + P++ L L+
Sbjct: 55 LAALLDAL------GLGPVVLVGHSLGGAVALAAAARRPERVAG---------LVLISPP 99
Query: 604 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP 663
+ + + + + DL ++++ P + + G D VP
Sbjct: 100 LRDLEE-LLAADAAALLALLRAALLDADLRE--------ALARLTVPVLVIHGEDDPLVP 150
Query: 664 VSNGLQYARALREKGVETKVIVFPNDVHGI--ERPQ 697
+ A AL +++V P H E P+
Sbjct: 151 PEAARRLAEALPGA----ELVVLPGAGHLPHLEHPE 182
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 4e-09
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 27/229 (11%)
Query: 479 SCDPLIVVLHGGPH-SVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKV 536
+ P+++ LHGG SL ++ +A L++ G ++ V+YR + P
Sbjct: 77 ATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLA-----------PEHP 125
Query: 537 GSQDVNDVLTAIDHVIDMGL---ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 593
+ D A + +PS++ V G S GG L L A D+ + A
Sbjct: 126 FPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQV 185
Query: 594 LC--NLALMVGTTDIPDWCYVESYGS-KGKDSFTES--PSVEDLTRFHSKSPIS--HISK 646
L L L +P + + + F + + D SP++ +S
Sbjct: 186 LISPLLDLTSSAASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPE-ASPLASDDLSG 244
Query: 647 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 695
+ PT+ D G YA LR GV ++ V+P +HG +
Sbjct: 245 LP-PTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRVYPGMIHGFDL 290
|
Length = 312 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-09
Identities = 36/210 (17%), Positives = 63/210 (30%), Gaps = 65/210 (30%)
Query: 483 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 542
L+V+LHG +Y+ L+S GY+++ V+Y G S
Sbjct: 1 LVVLLHGA--GGDPEAYAPLARALASRGYNVVAVDYPGHGA--------------SLGAP 44
Query: 543 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 602
D + V+ +P ++ +VG S GG + L + P A
Sbjct: 45 DA----EAVLADAPLDPERIVLVGHSLGGGVALLLAARDPRVKAAVVLAAG--------- 91
Query: 603 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV 662
+ ++K+ P + + G +D V
Sbjct: 92 ---------------------------------DPPDALDDLAKLTVPVLIIHGTRDGVV 118
Query: 663 PVSNGLQYARALREKGVETKVIVFPNDVHG 692
P A AL +++V H
Sbjct: 119 PPEEAEALAAALPGP---AELVVIEGAGHS 145
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 6e-09
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 476 KDCSCDPLIVVLHG-GPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 533
K D +L+ G ++SL+ +S S G ++ N RG FG E Q+
Sbjct: 414 KGAKKDENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGM 473
Query: 534 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 593
+ +D + + +I G+ +P K+ + GGS+GG L + Q P+ F AA P
Sbjct: 474 KENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVP 533
Query: 594 LCNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT--P 650
L + M+ + ++ YG+ + P ED + SP ++ + P
Sbjct: 534 LLD---MLRYHLLTAGSSWIAEYGN------PDDP--EDRAFLLAYSPYHNLKPGQKYPP 582
Query: 651 TIFLLGAQDLRVPVSNGLQYARALREKGVET 681
T+ D RV ++ ++A L+E G
Sbjct: 583 TLITTSLHDDRVHPAHARKFAAKLQEVGAPV 613
|
Length = 648 |
| >gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 48/220 (21%), Positives = 81/220 (36%), Gaps = 54/220 (24%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGF-------GEEALQSLP 533
P ++VLH L+ + + +A L+ GY +L + G G E L
Sbjct: 28 PGVIVLHEIFG---LNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLV 84
Query: 534 GKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 592
+V +V D+ A+D++ +P ++ VVG GG L + AA R
Sbjct: 85 ERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLA-----------LLAATRA 133
Query: 593 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 652
P A+ + YG D + K+K P +
Sbjct: 134 PEVKAAV----------AF---YGGLIAD------------------DTADAPKIKVPVL 162
Query: 653 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692
L +D +P ++ A AL + GV+ + ++P HG
Sbjct: 163 LHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHG 202
|
Length = 236 |
| >gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (103), Expect = 1e-04
Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
P +V+LHG P S S+ + + Y ++ + RG G G S
Sbjct: 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRG---HG---RSDPAGYSLSAY 74
Query: 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 600
+D+ +D + KV +VG S GG + L + PD+ P L+
Sbjct: 75 ADDLAALLDAL------GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLL 128
Query: 601 VGTTDIPDW 609
P
Sbjct: 129 EAALRQPAG 137
|
Length = 282 |
| >gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 40/174 (22%), Positives = 60/174 (34%), Gaps = 40/174 (22%)
Query: 541 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN---- 592
+ D A+ +H ++G A+PS++ V G S GG L VA AR+
Sbjct: 49 IEDAYAALRWLAEHAWELG-ADPSRIAVAGDSAGGNLAAA---------VALRARDEGLP 98
Query: 593 -PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT 651
P + + G + ESY ++ R P
Sbjct: 99 LPAGQVLIYPGLDLRTE---SESYNEYADGPLLTRDDMDWFWR-LYLPGAD----RDDPL 150
Query: 652 IFLLGAQDLR-VP------------VSNGLQYARALREKGVETKVIVFPNDVHG 692
L A DL +P G YA LR GVE +++ +P +HG
Sbjct: 151 ASPLFAADLSGLPPALVVVAEFDPLRDEGEAYAERLRAAGVEVELVEYPGMIHG 204
|
This catalytic domain is found in a very wide range of enzymes. Length = 207 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 40/168 (23%)
Query: 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LALM 600
D + A H++ G +P ++ +GGS GG L + APD F A+ P + L M
Sbjct: 509 TDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTM 568
Query: 601 ------VGTTDIPDW---------CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 645
+ T+ +W Y++SY SP ++
Sbjct: 569 LDPSLPLTVTEWDEWGNPLDPEYYDYIKSY-----------------------SPYDNVE 605
Query: 646 KVKTPTIF-LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692
P I G D RV ++ LRE + ++ ++
Sbjct: 606 AQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDA 653
|
Length = 682 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
+PL+V +G + + +S S L G+ IV+ RG G++ + GK +
Sbjct: 445 NPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYED--GKFLKKK 502
Query: 541 --VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
ND L A D ++ +G +PS +GGS GG L I Q P+ F A+ P ++
Sbjct: 503 NTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVV 562
Query: 599 LMVGTTDIP 607
+ IP
Sbjct: 563 TTMLDESIP 571
|
Length = 686 |
| >gnl|CDD|216672 pfam01738, DLH, Dienelactone hydrolase family | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 48/227 (21%), Positives = 72/227 (31%), Gaps = 56/227 (24%)
Query: 482 PLIVVLH--GGPHSVSLSSYSKSLAFLSSVGYSLLIVN--YRGSLGFG-----EEALQSL 532
P++VV G ++ A L+ GY L + R L A++ L
Sbjct: 15 PVVVVFQEIFGVNNF----IRDIAARLAEEGYVALCPDLYARQGLDPTDPREAARAMRGL 70
Query: 533 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 592
K V+D+L AI+++ + KV VVG GG L AARN
Sbjct: 71 LSKRMEAVVDDLLAAINYLRGQPYVDTKKVGVVGFCLGGRLA-----------FLLAARN 119
Query: 593 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 652
+ GT P P+ +K P +
Sbjct: 120 GVDAAVSFYGTGPEP--------------------------------PLDEAPAIKAPIL 147
Query: 653 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 699
G +D VP ALR V+ ++ V+P H +
Sbjct: 148 AHFGEEDPFVPAEARDLLEEALRAANVDHELHVYPGAGHAFAADGRE 194
|
Length = 215 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 715 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.97 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.96 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.96 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.96 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.94 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.94 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.89 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK10566 | 249 | esterase; Provisional | 99.88 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.88 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.87 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.87 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.87 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.87 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.87 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.85 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.85 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.85 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.84 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.84 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.84 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.84 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.83 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.83 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.82 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.82 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.82 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.81 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.8 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.8 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.79 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.79 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.76 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.76 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.76 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.76 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.74 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.74 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.73 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.72 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.72 | |
| PLN02511 | 388 | hydrolase | 99.72 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.72 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.72 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.71 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.71 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.71 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.7 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.7 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.7 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.69 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.68 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.68 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.68 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.67 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.67 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.67 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.67 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.67 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.67 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.66 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.66 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.65 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.64 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.64 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.64 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.63 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.63 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.63 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.62 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.61 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.61 | |
| PLN00021 | 313 | chlorophyllase | 99.61 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.6 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.6 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.6 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.59 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.58 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.58 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.58 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.58 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.58 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.57 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.57 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.57 | |
| PLN02578 | 354 | hydrolase | 99.57 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.57 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.56 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.56 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.55 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.55 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.55 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.54 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.54 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.54 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.52 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.51 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.51 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.49 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.47 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.47 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.39 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.39 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.38 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.38 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.37 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.37 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.35 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.34 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.32 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.31 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.3 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 99.28 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 99.25 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.24 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.24 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 99.23 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.2 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 99.19 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.18 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.18 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 99.18 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 99.13 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.13 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 99.12 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 99.11 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.11 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.1 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 99.1 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 99.06 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.06 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.05 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 99.03 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 99.03 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.03 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.02 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.02 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.98 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.98 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.98 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.97 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.97 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.96 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.96 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.96 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.95 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.94 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.93 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.93 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 98.91 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.91 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.91 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.9 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.89 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.89 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.88 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.87 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.85 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.84 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.84 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.83 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.83 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.82 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.8 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.8 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.79 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.78 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.76 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.76 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.71 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.7 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.69 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.69 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.69 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.69 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.68 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.68 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.68 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.67 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.66 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.66 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.65 | |
| PTZ00421 | 493 | coronin; Provisional | 98.64 | |
| PRK10115 | 686 | protease 2; Provisional | 98.63 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 98.63 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 98.63 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.62 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.62 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.6 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.6 | |
| PTZ00421 | 493 | coronin; Provisional | 98.57 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.54 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.53 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.52 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.51 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.51 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 98.5 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.48 | |
| PTZ00420 | 568 | coronin; Provisional | 98.46 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.45 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.45 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 98.45 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.44 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.43 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 98.42 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.41 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.41 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.4 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.37 | |
| PTZ00420 | 568 | coronin; Provisional | 98.37 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.36 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 98.32 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.31 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 98.29 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.29 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 98.28 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.25 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.24 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.23 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.23 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 98.22 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 98.22 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 98.22 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.2 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 98.19 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.19 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.17 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.16 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.14 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 98.13 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.12 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.12 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.12 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.1 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.09 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.08 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.08 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.08 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.06 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.04 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.04 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.03 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 98.03 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.03 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.0 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.98 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.98 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.97 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 97.97 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 97.95 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.93 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.93 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 97.91 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.9 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 97.89 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.88 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.88 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.88 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 97.87 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.85 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.84 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.83 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.81 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.8 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.78 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 97.77 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.76 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 97.73 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.72 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.7 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.67 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 97.65 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 97.65 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.63 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.63 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.62 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.6 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.58 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.58 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.58 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 97.55 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.54 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.52 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.51 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.51 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.5 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.49 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.48 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.46 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.45 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.41 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.4 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.35 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 97.34 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.34 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.33 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.33 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.29 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 97.27 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 97.27 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.26 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 97.22 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 97.21 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.21 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.19 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.17 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.17 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.17 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.16 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.15 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.13 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 97.13 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.12 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 97.12 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 97.12 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.1 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.09 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.08 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.07 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.06 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.05 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.05 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.04 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 97.02 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.98 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 96.98 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 96.97 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 96.88 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 96.83 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.83 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.81 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 96.75 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.73 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 96.72 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.69 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.67 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.66 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 96.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.6 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 96.54 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 96.54 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 96.53 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.5 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 96.4 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.38 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.37 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 96.37 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.36 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.3 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.28 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 96.25 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.2 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 96.15 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.14 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 96.12 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.1 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.06 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 95.98 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.98 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 95.96 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 95.93 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.93 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 95.91 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 95.87 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 95.83 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 95.82 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 95.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.78 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 95.75 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 95.74 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 95.73 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 95.72 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.71 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 95.7 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 95.57 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 95.51 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 95.41 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 95.39 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 95.28 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 95.27 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 95.23 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 95.19 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 95.19 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 95.18 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.17 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 95.11 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.08 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 95.07 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.02 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 94.95 | |
| PLN02209 | 437 | serine carboxypeptidase | 94.87 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 94.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 94.82 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 94.8 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 94.78 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 94.77 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 94.72 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 94.71 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 94.58 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 94.48 | |
| KOG2521 | 350 | consensus Uncharacterized conserved protein [Funct | 94.47 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 94.39 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 94.29 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 94.27 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 94.26 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 94.23 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 94.11 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 94.02 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 93.95 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 93.94 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 93.93 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 93.73 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 93.65 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 93.51 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 93.46 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 93.41 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.39 | |
| smart00824 | 212 | PKS_TE Thioesterase. Peptide synthetases are invol | 93.29 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.27 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 93.22 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 93.18 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 93.1 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 92.89 | |
| PF02089 | 279 | Palm_thioest: Palmitoyl protein thioesterase; Inte | 92.88 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 92.84 | |
| PLN02606 | 306 | palmitoyl-protein thioesterase | 92.55 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.43 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 92.42 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 92.41 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 92.34 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 92.33 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 92.32 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 92.27 | |
| PLN02633 | 314 | palmitoyl protein thioesterase family protein | 91.84 | |
| cd00519 | 229 | Lipase_3 Lipase (class 3). Lipases are esterases t | 91.76 | |
| COG2939 | 498 | Carboxypeptidase C (cathepsin A) [Amino acid trans | 91.74 | |
| PLN02517 | 642 | phosphatidylcholine-sterol O-acyltransferase | 91.7 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 91.59 | |
| PLN02454 | 414 | triacylglycerol lipase | 91.47 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 91.45 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 91.42 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 91.12 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 91.06 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 90.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 90.52 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 90.31 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 90.23 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 90.04 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 89.74 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 89.73 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 89.73 | |
| PLN02408 | 365 | phospholipase A1 | 89.71 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 89.17 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 89.07 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 88.98 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 88.89 | |
| PLN02571 | 413 | triacylglycerol lipase | 88.85 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 88.79 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 88.71 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 88.61 | |
| KOG2369 | 473 | consensus Lecithin:cholesterol acyltransferase (LC | 88.24 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 88.22 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 88.07 | |
| PLN02324 | 415 | triacylglycerol lipase | 88.01 | |
| PF06850 | 202 | PHB_depo_C: PHB de-polymerase C-terminus; InterPro | 87.61 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 87.08 | |
| PLN02802 | 509 | triacylglycerol lipase | 87.04 | |
| PF09994 | 277 | DUF2235: Uncharacterized alpha/beta hydrolase doma | 86.66 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 86.58 | |
| PLN00413 | 479 | triacylglycerol lipase | 86.4 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 86.15 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 86.0 | |
| PF06259 | 177 | Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR | 85.64 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 85.53 | |
| PF01083 | 179 | Cutinase: Cutinase; InterPro: IPR000675 Aerial pla | 85.34 | |
| COG4287 | 507 | PqaA PhoPQ-activated pathogenicity-related protein | 85.32 | |
| PLN02162 | 475 | triacylglycerol lipase | 85.28 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 84.79 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=430.11 Aligned_cols=588 Identities=22% Similarity=0.303 Sum_probs=408.2
Q ss_pred cccccccccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEE
Q 005093 3 SISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKE 82 (715)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~ 82 (715)
..+..+...+.+.+.+|+.+... ...++ .-+.+..+.|||||+.++|..+.+....++|.+..+| .+
T Consensus 30 i~~~~~~~~~~~~~~~~~~d~~~----~~~~~------~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~ 96 (620)
T COG1506 30 ILTGLDFLKPLYKSSLWVSDGKT----VRLLT------FGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LI 96 (620)
T ss_pred eeccccccccccccceEEEeccc----ccccc------cCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ce
Confidence 34445677788888999854433 11111 1256889999999999999985554567888887444 22
Q ss_pred EecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCc
Q 005093 83 FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 162 (715)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 162 (715)
......+ +...|+|+|+.+++......... .+. +......-..|.. +.+ ..+.
T Consensus 97 ~~~~~~v----------~~~~~~~~g~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~--~~g---~~~~ 149 (620)
T COG1506 97 TKTAFGV----------SDARWSPDGDRIAFLTAEGASKR---------DGG---DHLFVDRLPVWFD--GRG---GERS 149 (620)
T ss_pred eeeeccc----------ccceeCCCCCeEEEEeccccccc---------CCc---eeeeecccceeec--CCC---Cccc
Confidence 2223344 68999999999999433221110 000 0000000000110 111 2358
Q ss_pred eEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhh
Q 005093 163 SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 242 (715)
Q Consensus 163 ~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~ 242 (715)
.++++|.++ ....+ ......+..+++.++++. ++....... ... .....+....
T Consensus 150 ~l~~~d~~~-~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~------~~~~~~~~~~----------- 203 (620)
T COG1506 150 DLYVVDIES-KLIKL--GLGNLDVVSFATDGDGRL----VASIRLDDD--ADP------WVTNLYVLIE----------- 203 (620)
T ss_pred ceEEEccCc-ccccc--cCCCCceeeeeeCCCCce----eEEeeeccc--cCC------ceEeeEEEec-----------
Confidence 899999977 44444 455556666677777775 555543221 000 1112333332
Q ss_pred hhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecC
Q 005093 243 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA 322 (715)
Q Consensus 243 ~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~ 322 (715)
.++....++........+.|.+||+.+++.+..... .......+++++...+..... .....
T Consensus 204 ------~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~-------~~~~~-- 265 (620)
T COG1506 204 ------GNGELESLTPGEGSISKLAFDADGKSIALLGTESDR---GLAEGDFILLLDGELGEVDGD-------LSSGD-- 265 (620)
T ss_pred ------CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCcc---CccccceEEEEecccccccee-------eccCC--
Confidence 467888888888889999999999999999887641 123344566666222222110 00000
Q ss_pred CCCCccccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCC
Q 005093 323 EGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV 401 (715)
Q Consensus 323 ~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~-~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p 401 (715)
. .. +.....+.-++..+++.... .+...++.++...+....+....+ ....|+.+++.+++..+++..|
T Consensus 266 --~-~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~--~v~~f~~~~~~~~~~~s~~~~p 335 (620)
T COG1506 266 --D-TR-----GAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDG--GVPGFDVDGRKLALAYSSPTEP 335 (620)
T ss_pred --c-cc-----CcHHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecCCCc--eEEEEeeCCCEEEEEecCCCCc
Confidence 0 00 01111122345557776665 677778888765555554544434 4467777999999999999999
Q ss_pred CeEEEEeecccCCCcceeeeccCCCCCCCchhhhhhccccceeeeecccccccccccCCCCceEEEEEEecCCCCCCCCC
Q 005093 402 PQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCD 481 (715)
Q Consensus 402 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~ 481 (715)
+++++.+.+ .+ .++ +..+. ..+....+ .. ...+++...+|.++++++++|.++++.+++
T Consensus 336 ~~i~~~~~~-~~--~~~---------~~~~~---~~~~~~~~-----~~-~e~~~~~~~dG~~i~~~l~~P~~~~~~k~y 394 (620)
T COG1506 336 PEIYLYDRG-EE--AKL---------TSSNN---SGLKKVKL-----AE-PEPVTYKSNDGETIHGWLYKPPGFDPRKKY 394 (620)
T ss_pred cceEEEcCC-Cc--eEE---------eeccc---cccccccc-----CC-ceEEEEEcCCCCEEEEEEecCCCCCCCCCC
Confidence 999998862 11 111 01111 01111111 00 112356677899999999999999888889
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCce
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 561 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~ 561 (715)
|+||++||||.......+...++.|+.+||+|+.+|+||+.|||.+|.+....+++..+.+|+.++++++.+.+.+|++|
T Consensus 395 P~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~r 474 (620)
T COG1506 395 PLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPER 474 (620)
T ss_pred CEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHH
Confidence 99999999998887778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCch
Q 005093 562 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 641 (715)
Q Consensus 562 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 641 (715)
|+|+|+|+||+|+++++++.| +|++++...+.+++..+........+....... ..+.+ +.+.+...||+
T Consensus 475 i~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~sp~ 544 (620)
T COG1506 475 IGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENG--------GGPPE-DREKYEDRSPI 544 (620)
T ss_pred eEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhC--------CCccc-ChHHHHhcChh
Confidence 999999999999999999876 899999999988877665544433222111111 11112 66889999999
Q ss_pred hhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 642 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 642 ~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
.+++++++|+|+|||+.|.+||.+|+++++++|+.+|+++++++||+++|++..+++....++++++||+++++
T Consensus 545 ~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~~ 618 (620)
T COG1506 545 FYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLK 618 (620)
T ss_pred hhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=383.04 Aligned_cols=529 Identities=14% Similarity=0.117 Sum_probs=357.5
Q ss_pred ceEEeeCCCCceEEEEecCCC-CCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
.....|||||++|||..+.++ +..+++.+. .+|.... ..++... ..+.|++||+.|+|........
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-~~i~~~~----------~~~~w~~D~~~~~y~~~~~~~~- 196 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-ELLDNVE----------PSFVWANDSWTFYYVRKHPVTL- 196 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-ccccCcc----------eEEEEeeCCCEEEEEEecCCCC-
Confidence 566789999999999987653 445677777 5564210 0111111 3589999999999987642100
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC--ceEeecCCCCCCccceEEEec-CCCCCc
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPKSLSVGQVVWAP-LNEGLH 199 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--~~~~l~~~~~~~~~~~~~~sp-dg~~~~ 199 (715)
...+||++++.++ +.+.+. ...+....-..|.+ |++.
T Consensus 197 -------------------------------------~~~~v~~h~lgt~~~~d~lv~-~e~~~~~~~~~~~s~d~~~-- 236 (686)
T PRK10115 197 -------------------------------------LPYQVWRHTIGTPASQDELVY-EEKDDTFYVSLHKTTSKHY-- 236 (686)
T ss_pred -------------------------------------CCCEEEEEECCCChhHCeEEE-eeCCCCEEEEEEEcCCCCE--
Confidence 2378999999988 444452 11111111123444 8887
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecC-CCCccccceeEcCCCCeEEEE
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~~~~spdg~~l~~~ 278 (715)
++...... ..+++++++.+ ...+....+. ........+ ...+..+++.
T Consensus 237 --l~i~~~~~------------~~~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~--~~~~~~ly~~ 285 (686)
T PRK10115 237 --VVIHLASA------------TTSEVLLLDAE---------------LADAEPFVFLPRRKDHEYSL--DHYQHRFYLR 285 (686)
T ss_pred --EEEEEECC------------ccccEEEEECc---------------CCCCCceEEEECCCCCEEEE--EeCCCEEEEE
Confidence 66444221 22467777641 0233333332 222222222 2345667777
Q ss_pred ecCCCCCCCCccccceeEeeecCC-CCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCee
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 357 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~-~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 357 (715)
++.. .....|..+++.+ ++.+.+ +....+. .+..+.+. ++.|+++...++..
T Consensus 286 tn~~-------~~~~~l~~~~~~~~~~~~~l----------~~~~~~~--------~i~~~~~~--~~~l~~~~~~~g~~ 338 (686)
T PRK10115 286 SNRH-------GKNFGLYRTRVRDEQQWEEL----------IPPRENI--------MLEGFTLF--TDWLVVEERQRGLT 338 (686)
T ss_pred EcCC-------CCCceEEEecCCCcccCeEE----------ECCCCCC--------EEEEEEEE--CCEEEEEEEeCCEE
Confidence 7653 3345688888763 111111 1111111 12234454 55798999999999
Q ss_pred EEEEEECCCCcEEEecC-CCCCceeEEEe--ecCCEEEEEEeCCCCCCeEEEEeecccCCCcceeeeccCCCCCCCchhh
Q 005093 358 VIISVNVSSGELLRITP-AESNFSWSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKV 434 (715)
Q Consensus 358 ~l~~~d~~tg~~~~l~~-~~~~~~~~~~s--~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (715)
+|+.+++.+++...|.. .........++ .+++.+++..+++..|+++|.+++.+++ ... ++..+.
T Consensus 339 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~-~~~---------l~~~~~-- 406 (686)
T PRK10115 339 SLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE-RRV---------LKQTEV-- 406 (686)
T ss_pred EEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc-EEE---------EEecCC--
Confidence 99999988777777763 22211222233 4567899999999999999999987543 111 111110
Q ss_pred hhhccccceeeeecccccccccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEE
Q 005093 435 KSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLL 514 (715)
Q Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi 514 (715)
..+....+....+ .+++.||.+|+++++.+++....++.|+||++|||+.......|....+.|+++||+|+
T Consensus 407 -~~~~~~~~~~e~v-------~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~ 478 (686)
T PRK10115 407 -PGFDAANYRSEHL-------WITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYA 478 (686)
T ss_pred -CCcCccccEEEEE-------EEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEE
Confidence 0011112222222 55678999999966665543345677999999999998877889888899999999999
Q ss_pred EEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCc
Q 005093 515 IVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594 (715)
Q Consensus 515 ~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 594 (715)
.+++||+++||+.|.+.....++..+++|+++++++|++++.+|++|++++|.|+||+++.+++.++|++|+|+|+..|+
T Consensus 479 ~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~ 558 (686)
T PRK10115 479 IVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPF 558 (686)
T ss_pred EEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCc
Confidence 99999999999999987777777788999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCC-ceeeeccCCCCCCCCCCCCC-hhhHHHHHhcCchhhccCCCCc-EEEEeeCCCCcCCchHHHHHH
Q 005093 595 CNLALMVGTTDIPD-WCYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQYA 671 (715)
Q Consensus 595 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P-~Lii~G~~D~~v~~~~~~~~~ 671 (715)
+|+.........+. +.....+|. |. .+..+.+..+||+.++.+++.| +||+||.+|.+||+.++.+++
T Consensus 559 ~D~~~~~~~~~~p~~~~~~~e~G~---------p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~ 629 (686)
T PRK10115 559 VDVVTTMLDESIPLTTGEFEEWGN---------PQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWV 629 (686)
T ss_pred hhHhhhcccCCCCCChhHHHHhCC---------CCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHH
Confidence 99887654333332 222222332 32 3445666789999999999989 678899999999999999999
Q ss_pred HHHHHcCCcEEEEEe---CCCCccCCCCCchHHHHH---HHHHHHHHhc
Q 005093 672 RALREKGVETKVIVF---PNDVHGIERPQSDFESFL---NIGLWFKKYC 714 (715)
Q Consensus 672 ~~l~~~g~~~~~~~~---~~~~H~~~~~~~~~~~~~---~i~~wl~~~l 714 (715)
.+|++++.+++++++ +++||+. ..++...++ ....|+-..+
T Consensus 630 a~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~~~~~A~~~aFl~~~~ 676 (686)
T PRK10115 630 AKLRELKTDDHLLLLCTDMDSGHGG--KSGRFKSYEGVAMEYAFLIALA 676 (686)
T ss_pred HHHHhcCCCCceEEEEecCCCCCCC--CcCHHHHHHHHHHHHHHHHHHh
Confidence 999999999888888 9999984 333334433 4466665543
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=316.73 Aligned_cols=592 Identities=19% Similarity=0.249 Sum_probs=375.7
Q ss_pred cceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEec------
Q 005093 13 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV------ 85 (715)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~------ 85 (715)
.+....++.+++++.. + .+...+-.......|||.|+.|+|+.+++ ++.-. ......+++..
T Consensus 124 s~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~wsp~~~~l~yv~~~n-----iy~~~~~~~~~~~~~~~~~~~~i 192 (755)
T KOG2100|consen 124 SYTAKYHLYDLNTGEK----L--HPPEYEGSKIQYASWSPLGNDLAYVLHNN-----IYYQSSEEDEDVRIVSNGGEDVI 192 (755)
T ss_pred eeEEEEEEEEcCCCCc----c--cCcccCCCeeEEEEEcCCCCEEEEEEecc-----cccccCcCCCceEEEecCCCceE
Confidence 3445555666666551 0 11111123357899999999999998865 22111 12222222221
Q ss_pred CccccccccCCCcc---cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCc
Q 005093 86 PQTVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 162 (715)
Q Consensus 86 ~~~~~~~~~~~~~~---~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 162 (715)
-.+..+++|.++.+ ....|||||.+++|.......-. ......-......+. ...+.|... |. .....
T Consensus 193 ~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~-~~~~~~~~~~~~yp~----~~~~~ypk~-g~---~np~v 263 (755)
T KOG2100|consen 193 FNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFNDTKVE-TINLPGYTDDDQYPK----STNFHYPKA-GA---PNPAV 263 (755)
T ss_pred EcCCCCceeehhhcccCccceeCCCCceeEEEEecccccc-eEEeccccccccCcc----cceeecCCC-CC---CCCeE
Confidence 12445667775533 46779999999999876553311 111100000000000 001112111 22 11335
Q ss_pred eEEEEEccCCceEeec----CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh
Q 005093 163 SLFVININSGEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238 (715)
Q Consensus 163 ~l~~~~~~~g~~~~l~----~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 238 (715)
.|+++|+.+.....+. ............|.-+.+ +++.. .++.+.+-...++.
T Consensus 264 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~~-------------~~r~~~~~~~~~cd----- 320 (755)
T KOG2100|consen 264 SLFVVDLHDPPRLGIPPPTNQRSGEYYVTNVKWDTTEK-----VLVVW-------------TNREQNISVETLCD----- 320 (755)
T ss_pred EEEEEeCCCceeeccCCccccccCceEEEEEEEecCcc-----EEEEE-------------EccCCCeeeeEEec-----
Confidence 7888886555443321 011122344566766644 44332 11222233332210
Q ss_pred hhhhhhccCCCCCC--ceecCCCCc-c----ccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCC-CCCCccc
Q 005093 239 SELELKESSSEDLP--VVNLTESIS-S----AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFSSLE 310 (715)
Q Consensus 239 ~~~~~~~~~~~~~~--~~~lt~~~~-~----~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~-~~~~lt~ 310 (715)
..+. ......... + ...|.++.|+....+...... ....++..+....+ ..+.+|.
T Consensus 321 ----------~~~~~~~~~~~~~~~~W~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~hi~~~~~~~~~~~~~lt~ 384 (755)
T KOG2100|consen 321 ----------TPGICRVVYEESSDGGWVEHQNVEPVFSSDGSSYLKVDSVSD------GGYNHIAYLKLSNGSEPRMLTS 384 (755)
T ss_pred ----------CcccceeeEeccccccccccccccceEeecCCceeEEEeecc------CCEEEEEEEEcCCCCccccccc
Confidence 1111 111111111 1 234778888865555554432 11567777776666 5566777
Q ss_pred ceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee--CCeeEEEEEECCCCcEEEecCCCC----CceeEEE
Q 005093 311 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSGELLRITPAES----NFSWSLL 384 (715)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~--~~~~~l~~~d~~tg~~~~l~~~~~----~~~~~~~ 384 (715)
+.+++..+ +.|..+++.++|.+.. .+..+||.+++.++....++.... .+....+
T Consensus 385 g~w~v~~i-------------------~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~ 445 (755)
T KOG2100|consen 385 GNWEVTSI-------------------LGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTVESLTCSLITGPCTYLSVSF 445 (755)
T ss_pred cceEEEEe-------------------ccccCCCceEEEEecCCCCCceEEEEEEccccccccccccCCCCcceEEEEec
Confidence 77665432 2345677889998886 467789999999888887765544 2222345
Q ss_pred eecCCEEEEEEeCCCCCCeEEEEeecccCCCcceeeeccCCCCCCCchhhhhhccccceeeeecccccccccccCCCCce
Q 005093 385 TLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKP 464 (715)
Q Consensus 385 s~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~ 464 (715)
+.....++..++++..|.. .+-...+.. ... +.. | +.|+.+.+.+.... +|...+ ....-+|..
T Consensus 446 ~~~~~~~v~~~~gP~~p~~-~~~~~~~~~-~~~--~~~----L-e~n~~~~~~~~~~~-----~p~~~~--~~i~~~~~~ 509 (755)
T KOG2100|consen 446 SKSAKYYVLSCSGPKVPDG-QLTRHSSKN-SKT--IVV----L-ETNEELKKTIENVA-----LPIVEF--GKIEIDGIT 509 (755)
T ss_pred CCcccEEEEEccCCCCCcc-eeecccccc-ceE--EEE----e-ccChhhHHHhhccc-----CCccee--EEEEeccEE
Confidence 5556777788888888754 221222221 111 111 1 34454444443222 221111 111127889
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc---cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccch
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~---~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~ 541 (715)
....+++|+++++.+++|++|.+|||+.+.... ........+...|++|+.+|+||++++|..+...+++++|..++
T Consensus 510 ~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev 589 (755)
T KOG2100|consen 510 ANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEV 589 (755)
T ss_pred EEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcch
Confidence 999999999999999999999999999743221 22223345689999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCC-CceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCC
Q 005093 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP-DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 620 (715)
Q Consensus 542 ~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (715)
+|+..+++++.+++.+|.+||+|+|+|+||++++.++...+ +.|+|+++++|+.++. +..... .
T Consensus 590 ~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~~--------------t 654 (755)
T KOG2100|consen 590 KDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDSTY--------------T 654 (755)
T ss_pred HHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eecccc--------------c
Confidence 99999999999999999999999999999999999999887 7899999999999876 332221 1
Q ss_pred CCCCCCCChhhHHHHHhcCchhhccCCCCcE-EEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCch
Q 005093 621 DSFTESPSVEDLTRFHSKSPISHISKVKTPT-IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 699 (715)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~-Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 699 (715)
+++++.+. .+...|.+.++...+..++.|. |++||+.|..|+++++.+++++|+.+|+++++++||++.|++......
T Consensus 655 erymg~p~-~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~ 733 (755)
T KOG2100|consen 655 ERYMGLPS-ENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVI 733 (755)
T ss_pred HhhcCCCc-cccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccch
Confidence 22334443 2333378888888888888775 999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHhc
Q 005093 700 FESFLNIGLWFKKYC 714 (715)
Q Consensus 700 ~~~~~~i~~wl~~~l 714 (715)
...+..+..||+..+
T Consensus 734 ~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 734 SHLYEKLDRFLRDCF 748 (755)
T ss_pred HHHHHHHHHHHHHHc
Confidence 789999999998654
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=280.05 Aligned_cols=340 Identities=19% Similarity=0.263 Sum_probs=262.3
Q ss_pred CCEEEEEeeeCC--eeEEEEEECC-CCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCcceee
Q 005093 344 GCTMLLSSIWGS--SQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 420 (715)
Q Consensus 344 g~~l~~~~~~~~--~~~l~~~d~~-tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~ 420 (715)
.+.+||....+. ..+||.+... .|+..+++...-.++ ..++.+=+.++...++...|+++.++.+...++.
T Consensus 515 ~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~-~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~----- 588 (867)
T KOG2281|consen 515 RKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHS-CELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEND----- 588 (867)
T ss_pred ceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccc-hhhhhhhhhHhhhhhcCCCCceEEEEeccCCccC-----
Confidence 346777776554 4579999887 899999998765343 2355544557778899999999999998766522
Q ss_pred eccCCCCCCCchhhhhhccccceeeeecccccccccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cc
Q 005093 421 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY 499 (715)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-~~ 499 (715)
++........-+++.......-.|- .-+.|....|..+.|.+|.|.++++.+++|+|++++|||...... .|
T Consensus 589 -----~l~~q~~~~~~l~~~~~~~Pdy~p~--eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsf 661 (867)
T KOG2281|consen 589 -----PLPKQVSFWAILVSGAPPPPDYVPP--EIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSF 661 (867)
T ss_pred -----cccchhhHHHHHHhcCCCCCccCCh--hheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccc
Confidence 1111111111222222222111111 113456678899999999999999999999999999999754221 22
Q ss_pred h----HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcC-CCCCceEEEEEeChhHHHH
Q 005093 500 S----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLT 574 (715)
Q Consensus 500 ~----~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~-~~d~~~i~l~G~S~GG~~a 574 (715)
. ..+..||.+||.|+.+|-||+...|..|...+..++|..+++|..+.+++|.++. .+|.+||+|-|+|+||+++
T Consensus 662 kgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLS 741 (867)
T KOG2281|consen 662 KGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLS 741 (867)
T ss_pred cceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHH
Confidence 2 2346789999999999999999999999999999999999999999999999985 7999999999999999999
Q ss_pred HHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCC---CcE
Q 005093 575 THLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK---TPT 651 (715)
Q Consensus 575 ~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~P~ 651 (715)
+++++++|+.|+++|+.+|+.+|..+ .....++||+.|. .+...|.+-|...++.++. ..+
T Consensus 742 lm~L~~~P~IfrvAIAGapVT~W~~Y---------------DTgYTERYMg~P~-~nE~gY~agSV~~~VeklpdepnRL 805 (867)
T KOG2281|consen 742 LMGLAQYPNIFRVAIAGAPVTDWRLY---------------DTGYTERYMGYPD-NNEHGYGAGSVAGHVEKLPDEPNRL 805 (867)
T ss_pred HHHhhcCcceeeEEeccCcceeeeee---------------cccchhhhcCCCc-cchhcccchhHHHHHhhCCCCCceE
Confidence 99999999999999999999875422 2223456777664 3345566666666666664 459
Q ss_pred EEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 652 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
|++||--|+.|.+.+...+..+|.++|++.++++||++.|+...++..+-.-.+++.|+++
T Consensus 806 lLvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 806 LLVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred EEEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999988887777789999875
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=250.08 Aligned_cols=206 Identities=34% Similarity=0.581 Sum_probs=173.7
Q ss_pred cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHH
Q 005093 498 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 577 (715)
Q Consensus 498 ~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 577 (715)
.|....+.|+++||+|+.+||||++++|..+......+++..+++|+.++++++++++.+|++||+|+|+|+||++++.+
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 35677889999999999999999999999999988888998899999999999999999999999999999999999999
Q ss_pred HhhCCCceeEEEecCCcchhhhhccCCCCCCcee--eeccCCCCCCCCCCCCChhhHHHHHhcCchhhccC--CCCcEEE
Q 005093 578 IGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK--VKTPTIF 653 (715)
Q Consensus 578 a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--i~~P~Li 653 (715)
+.++|++|+++++.+|+.++.......+. +.. ...++ ......+.+...+|+..+.+ +++|+||
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~~s~~~~~~~~~~~~P~li 149 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDI--YTKAEYLEYG----------DPWDNPEFYRELSPISPADNVQIKPPVLI 149 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCC--HHHGHHHHHS----------STTTSHHHHHHHHHGGGGGGCGGGSEEEE
T ss_pred hcccceeeeeeeccceecchhcccccccc--cccccccccC----------ccchhhhhhhhhccccccccccCCCCEEE
Confidence 99999999999999999987655443322 100 00011 11235566777788888888 8899999
Q ss_pred EeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 654 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 654 i~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
+||++|.+||+.++.+++++|+++|++++++++|+++|++..++...+..+++++||+++|+
T Consensus 150 ~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 150 IHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp EEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred EccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998888888999999999999986
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-25 Score=229.80 Aligned_cols=537 Identities=17% Similarity=0.150 Sum_probs=337.8
Q ss_pred eeCCCCceEEEEecCCCCCCeEEEE-e-cCCc-cEEEEecCccccc-cccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 49 VPSPSGSKLLVVRNPENESPIQFEL-W-SQSQ-LEKEFHVPQTVHG-SVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 49 ~~Spdg~~la~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
....+|.+-.|.+...+...-++.. . .++. .+.+++......+ .+| .+..++.|||++.+||+.+..
T Consensus 80 vp~~~~~~~Yy~r~~~g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~---~Lg~~~~s~D~~~la~s~D~~------ 150 (682)
T COG1770 80 VPYRKGPYEYYSRTEEGKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFF---SLGAASISPDHNLLAYSVDVL------ 150 (682)
T ss_pred CccccCCeeEEEEecCCCcceeEEeccCCCCCceeEeecchhccCcccce---eeeeeeeCCCCceEEEEEecc------
Confidence 3456888888887665443344444 2 3444 3444443222111 111 235789999999999986543
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEE
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 204 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~ 204 (715)
|. .+..|.+.|+++|+..... - ......+.|.+|++. +.|
T Consensus 151 ----------------------------G~-----e~y~lr~kdL~tg~~~~d~--i-~~~~~~~~Wa~d~~~----lfY 190 (682)
T COG1770 151 ----------------------------GD-----EQYTLRFKDLATGEELPDE--I-TNTSGSFAWAADGKT----LFY 190 (682)
T ss_pred ----------------------------cc-----cEEEEEEEecccccccchh--h-cccccceEEecCCCe----EEE
Confidence 22 3477999999999865441 1 113557899999999 999
Q ss_pred EeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCc--cccceeEcCCCCeEEEEecCC
Q 005093 205 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 205 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~--~~~~~~~spdg~~l~~~~~~~ 282 (715)
+..... .++..||...+.. ...+-+.+.++.. ..-++.=|...++|+...+..
T Consensus 191 t~~d~~----------~rp~kv~~h~~gt---------------~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~ 245 (682)
T COG1770 191 TRLDEN----------HRPDKVWRHRLGT---------------PGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSH 245 (682)
T ss_pred EEEcCC----------CCcceEEEEecCC---------------CCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCC
Confidence 874332 2556788877621 0122222322211 112222244444554443221
Q ss_pred CCCCCCccccceeEeeecCCCCC--CCccccee----------e--eeeceecCCCC--------CccccccCCCC----
Q 005093 283 SVDSGAHSATDSLHRIDWPTNGN--FSSLEKIV----------D--VIPVVQCAEGD--------CFPGLYSSSIL---- 336 (715)
Q Consensus 283 ~~~~g~~~~~~~l~~~~~~~~~~--~~lt~~~~----------~--~~~~~~~~~~~--------~~~g~~~~~~~---- 336 (715)
..+++++++.+..+. +.+..... + .+.....+++. ..+..|...+.
T Consensus 246 --------~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~ 317 (682)
T COG1770 246 --------ITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHRED 317 (682)
T ss_pred --------cceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCC
Confidence 123444444433222 11111000 0 00000000000 00011111000
Q ss_pred --CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeE-EEe--ecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 337 --SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWS-LLT--LDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 337 --~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~-~~s--~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
--.++--.+.|++....++..+++..+.++++...|......++.. ..+ .+...|.+.+++.++|.+++-+|+.+
T Consensus 318 ~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t 397 (682)
T COG1770 318 VRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMAT 397 (682)
T ss_pred ceeeeeeeeccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeeccC
Confidence 0011112334556666678889999999888888887665533211 222 35678999999999999999999987
Q ss_pred cCCCcceeeeccCCCCCC-CchhhhhhccccceeeeecccccccccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCC
Q 005093 412 KANKGTWSWLNVSSPISR-CPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGG 490 (715)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg 490 (715)
++ ...+ . ..++.. +++ .+.....+. .+..+|..|...++.-++.+..++.|++|+.+|.
T Consensus 398 ~e-r~~L---k-qqeV~~g~dp--------~~Y~s~riw-------a~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGa 457 (682)
T COG1770 398 GE-RTLL---K-QQEVPGGFDP--------EDYVSRRIW-------ATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGA 457 (682)
T ss_pred Cc-EEEE---E-eccCCCCCCh--------hHeEEEEEE-------EEcCCCcEeeEEEEEecccCCCCCCcEEEEEecc
Confidence 75 1110 0 011112 332 122222222 1235777777778777766678899999999997
Q ss_pred CCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChh
Q 005093 491 PHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHG 570 (715)
Q Consensus 491 ~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~G 570 (715)
.+......|....--|..+||+......||.+.-|..|.+..........+.|++++.++|+++++.++++|+++|.|+|
T Consensus 458 YG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAG 537 (682)
T COG1770 458 YGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAG 537 (682)
T ss_pred ccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCch
Confidence 77766777776666788999999999999999999999887766666778999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCC-C
Q 005093 571 GFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-T 649 (715)
Q Consensus 571 G~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~ 649 (715)
|+++..++.+.|++|+++|+..|++|.........++- .......+.+....+..+.+..+||+.++..-. +
T Consensus 538 GmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPL-------T~~E~~EWGNP~d~e~y~yikSYSPYdNV~a~~YP 610 (682)
T COG1770 538 GMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPL-------TVTEWDEWGNPLDPEYYDYIKSYSPYDNVEAQPYP 610 (682)
T ss_pred hHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCC-------CccchhhhCCcCCHHHHHHHhhcCchhccccCCCC
Confidence 99999999999999999999999999764443333221 111111122233456678888999999987744 6
Q ss_pred cEEEEeeCCCCcCCchHHHHHHHHHHHcCC---cEEEEEeCCCCccCC
Q 005093 650 PTIFLLGAQDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIE 694 (715)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~---~~~~~~~~~~~H~~~ 694 (715)
|+|++.|..|+.|...+..+...+|+..+. ++-+..--.+||+-.
T Consensus 611 ~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~ 658 (682)
T COG1770 611 AILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGA 658 (682)
T ss_pred ceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCC
Confidence 799999999999999999999999998754 455555457899754
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-25 Score=228.95 Aligned_cols=345 Identities=17% Similarity=0.221 Sum_probs=263.7
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCC
Q 005093 336 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKAN 414 (715)
Q Consensus 336 ~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~~ 414 (715)
..+.+.+| .++....++...++...+...-+.+.+.... +.......+.++..+++...+...|+.+++.++.+.+
T Consensus 300 e~v~tt~~--~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e- 376 (648)
T COG1505 300 EQVVTTKD--KLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE- 376 (648)
T ss_pred eeeEEEcC--eEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCce-
Confidence 34556644 3666666555556666676553444443322 2222223344678899999999999999999987664
Q ss_pred CcceeeeccCCCCCCCchhhhhhccccceeeeecccccccccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC
Q 005093 415 KGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV 494 (715)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~ 494 (715)
... +-++..++ ...++++.+. ...+.||+.|+.++.. ++.+.. +.|++|+-+||....
T Consensus 377 Le~-----ik~~p~~F--------Da~~~~veQ~-------~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vs 434 (648)
T COG1505 377 LEV-----IREQPVQF--------DADNYEVEQF-------FATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNIS 434 (648)
T ss_pred ehh-----hhhccCCc--------CccCceEEEE-------EEEcCCCccccEEEEe-cCCcCC-CCceEEEeccccccc
Confidence 111 10011111 1223333332 4466789999999998 776555 899999999998888
Q ss_pred CCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHH
Q 005093 495 SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLT 574 (715)
Q Consensus 495 ~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a 574 (715)
..+.|......+.++|.+.++.+.||.++||..|+++..+...+..++|+.++++.|+++++..+++++|.|.|-||.++
T Consensus 435 ltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLv 514 (648)
T COG1505 435 LTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLV 514 (648)
T ss_pred cCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEE
Confidence 88888888888899999999999999999999999988877777789999999999999999999999999999999999
Q ss_pred HHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCC--CCcEE
Q 005093 575 THLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTI 652 (715)
Q Consensus 575 ~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~P~L 652 (715)
..++.+.|++|.|+|+..|+.||..+........| +..|+ .....++...+.++||++++..- -+|+|
T Consensus 515 g~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW--~~EYG--------~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~L 584 (648)
T COG1505 515 GAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSW--IAEYG--------NPDDPEDRAFLLAYSPYHNLKPGQKYPPTL 584 (648)
T ss_pred EeeeccChhhhCceeeccchhhhhhhcccccchhh--HhhcC--------CCCCHHHHHHHHhcCchhcCCccccCCCeE
Confidence 99999999999999999999998876544333222 33444 34556788899999999998763 37899
Q ss_pred EEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCch-HHHHHHHHHHHHHhcC
Q 005093 653 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD-FESFLNIGLWFKKYCK 715 (715)
Q Consensus 653 ii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~-~~~~~~i~~wl~~~l~ 715 (715)
|..+.+|.+|.+.+++.|+.+|++.+.++-+.+-.++||+-..+... .+....+..||.+.|+
T Consensus 585 ITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 585 ITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred EEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999888888899987655444 3455678889988874
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=249.63 Aligned_cols=267 Identities=17% Similarity=0.202 Sum_probs=200.7
Q ss_pred CccccccccccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCce--EEEEecCCCCCCeEEEEe-cCC
Q 005093 1 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK--LLVVRNPENESPIQFELW-SQS 77 (715)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~--la~~~~~~~~~~~~~~~~-~~~ 77 (715)
+|++++.+.+++++.+.||++|.++. ++.+||... +....|+|||||++ ++|++.++ +..++|.++ .+|
T Consensus 150 ayv~~~~~~~~~~~~~~l~~~d~dG~--~~~~lt~~~-----~~~~sP~wSPDG~~~~~~y~S~~~-g~~~I~~~~l~~g 221 (428)
T PRK01029 150 IFSLSTTNSDTELKQGELWSVDYDGQ--NLRPLTQEH-----SLSITPTWMHIGSGFPYLYVSYKL-GVPKIFLGSLENP 221 (428)
T ss_pred EEEEeeCCcccccccceEEEEcCCCC--CceEcccCC-----CCcccceEccCCCceEEEEEEccC-CCceEEEEECCCC
Confidence 47888888888888999999776554 567777755 55789999999988 55687766 778999999 788
Q ss_pred ccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccC
Q 005093 78 QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA 157 (715)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 157 (715)
+.++++..+... ..++|||||++|+|.++.. |
T Consensus 222 ~~~~lt~~~g~~----------~~p~wSPDG~~Laf~s~~~----------------------------------g---- 253 (428)
T PRK01029 222 AGKKILALQGNQ----------LMPTFSPRKKLLAFISDRY----------------------------------G---- 253 (428)
T ss_pred CceEeecCCCCc----------cceEECCCCCEEEEEECCC----------------------------------C----
Confidence 888888765554 5799999999999987532 1
Q ss_pred CccCceEEE--EEccC---CceEeecCCCCC-CccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEec
Q 005093 158 GKRQPSLFV--ININS---GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 231 (715)
Q Consensus 158 ~~~~~~l~~--~~~~~---g~~~~l~~~~~~-~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 231 (715)
...+|+ +++++ ++.+++ +... .....++|||||+. |+|.+...+ ..+||.+++
T Consensus 254 ---~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~----Laf~s~~~g------------~~~ly~~~~ 312 (428)
T PRK01029 254 ---NPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR----LVFVSNKDG------------RPRIYIMQI 312 (428)
T ss_pred ---CcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE----EEEEECCCC------------CceEEEEEC
Confidence 134555 45554 566777 3332 23457899999999 999874322 247999986
Q ss_pred ccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccc
Q 005093 232 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 311 (715)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~ 311 (715)
+. .++..++++........|.|||||++|+|.+... +..+|+++|+.+++.+.++..
T Consensus 313 ~~---------------~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~--------g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 313 DP---------------EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK--------GVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred cc---------------cccceEEeccCCCCccceeECCCCCEEEEEEcCC--------CCcEEEEEECCCCCeEEccCC
Confidence 20 2355777887766778899999999999998763 245799999999887766643
Q ss_pred eeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeec
Q 005093 312 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 387 (715)
Q Consensus 312 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~ 387 (715)
.. ....+.|+|||+.|+|++...+...||.+|+++++.++++...+....+.|++-
T Consensus 370 ~~--------------------~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 370 PE--------------------NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CC--------------------CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 10 234578999999999988877788999999999999999876654455666653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=237.97 Aligned_cols=252 Identities=16% Similarity=0.196 Sum_probs=190.7
Q ss_pred ccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccc
Q 005093 12 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVH 90 (715)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 90 (715)
+++.+.||++|.++. +..++|..+ ..+..|+|||||++|||++..+ +..+++.++ .+|+.+.++......
T Consensus 175 ~~~~~~l~~~d~dg~--~~~~lt~~~-----~~~~~p~wSPDG~~la~~s~~~-g~~~i~i~dl~~G~~~~l~~~~~~~- 245 (429)
T PRK03629 175 GQFPYELRVSDYDGY--NQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN- 245 (429)
T ss_pred CCcceeEEEEcCCCC--CCEEeecCC-----CceeeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCCeEEccCCCCCc-
Confidence 467889999877655 446676655 5678999999999999997654 567888877 677777776554433
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
..+.|||||++|+|..... +..+||++|++
T Consensus 246 ---------~~~~~SPDG~~La~~~~~~-----------------------------------------g~~~I~~~d~~ 275 (429)
T PRK03629 246 ---------GAPAFSPDGSKLAFALSKT-----------------------------------------GSLNLYVMDLA 275 (429)
T ss_pred ---------CCeEECCCCCEEEEEEcCC-----------------------------------------CCcEEEEEECC
Confidence 5799999999999975432 22579999999
Q ss_pred CCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC
Q 005093 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 250 (715)
Q Consensus 171 ~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (715)
+++.+++ +........+.|||||+. |+|++... ...+||.+|+ .+
T Consensus 276 tg~~~~l--t~~~~~~~~~~wSPDG~~----I~f~s~~~------------g~~~Iy~~d~-----------------~~ 320 (429)
T PRK03629 276 SGQIRQV--TDGRSNNTEPTWFPDSQN----LAYTSDQA------------GRPQVYKVNI-----------------NG 320 (429)
T ss_pred CCCEEEc--cCCCCCcCceEECCCCCE----EEEEeCCC------------CCceEEEEEC-----------------CC
Confidence 9999999 454445678999999999 99988432 2248999997 77
Q ss_pred CCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccc
Q 005093 251 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 330 (715)
Q Consensus 251 ~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~ 330 (715)
+..++++........+.|||||++|+|.+... ...+|+++|+.++..+.|+...
T Consensus 321 g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~--------g~~~I~~~dl~~g~~~~Lt~~~------------------ 374 (429)
T PRK03629 321 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNG--------GQQHIAKQDLATGGVQVLTDTF------------------ 374 (429)
T ss_pred CCeEEeecCCCCccCEEECCCCCEEEEEEccC--------CCceEEEEECCCCCeEEeCCCC------------------
Confidence 78888877655667899999999999998764 2357999999887766665321
Q ss_pred ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEee
Q 005093 331 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 386 (715)
Q Consensus 331 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~ 386 (715)
....+.|+|||+.|++.+.+++...|+.++++++..+++....+....+.|+|
T Consensus 375 ---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 375 ---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCC
Confidence 12356799999999999988777889999997777777765444333344543
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-23 Score=213.28 Aligned_cols=302 Identities=20% Similarity=0.228 Sum_probs=224.4
Q ss_pred cCCEEEEEEeCCCCCCeEEEEeecccCCCcceeeeccCCCCCCCchhhhhhccccceeeeecccccccccccCCCCceEE
Q 005093 387 DGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFE 466 (715)
Q Consensus 387 ~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 466 (715)
+...+.|..+++.+|+.||.+|+..+. ...-.+.+++..+..+ ....+....+ ...+.||..|.
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~-~e~~vf~e~~~~lpg~--------~~s~y~~~r~-------~~~SkDGt~VP 455 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGK-PEPSVFREITVVLPGF--------DASDYVVERI-------EVSSKDGTKVP 455 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCC-CCCcceeeeccccCcc--------cccceEEEEE-------EEecCCCCccc
Confidence 456888999999999999999998764 1111122232212111 1122233333 44666888888
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHH
Q 005093 467 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 546 (715)
Q Consensus 467 ~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~ 546 (715)
..++.-+..+..++.|++|+.||+........|......|..+|++.+..|.||.|++|..|++..........++|+++
T Consensus 456 M~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia 535 (712)
T KOG2237|consen 456 MFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIA 535 (712)
T ss_pred eEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHH
Confidence 88888766667789999999999887776677776555566799999999999999999999988777777778999999
Q ss_pred HHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCC
Q 005093 547 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 626 (715)
Q Consensus 547 ~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (715)
++++|++++++.++++++.|.|.||.++..++.++|++|.|+|+..|+.|+......+..+.|.. .++. .
T Consensus 536 ~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~s--d~ee--------~ 605 (712)
T KOG2237|consen 536 CAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTS--DYEE--------W 605 (712)
T ss_pred HHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchh--hhcc--------c
Confidence 99999999999999999999999999999999999999999999999999887765555554421 1111 1
Q ss_pred CChhhHHHHHhcCchhhccCCC-----CcEEEEeeCCCCcCCchHHHHHHHHHHHc-------CCcEEEEEeCCCCccCC
Q 005093 627 PSVEDLTRFHSKSPISHISKVK-----TPTIFLLGAQDLRVPVSNGLQYARALREK-------GVETKVIVFPNDVHGIE 694 (715)
Q Consensus 627 ~~~~~~~~~~~~sp~~~~~~i~-----~P~Lii~G~~D~~v~~~~~~~~~~~l~~~-------g~~~~~~~~~~~~H~~~ 694 (715)
...++.+.+..++|+..+++++ +-+|+..+.+|.+|++.++..+..+|+.+ ..++-+.+..++||+.-
T Consensus 606 g~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~ 685 (712)
T KOG2237|consen 606 GNPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAE 685 (712)
T ss_pred CChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccC
Confidence 1234555566666666555543 45899999999999999999999998865 24577889999999765
Q ss_pred CCC-chHHHHHHHHHHHHHhc
Q 005093 695 RPQ-SDFESFLNIGLWFKKYC 714 (715)
Q Consensus 695 ~~~-~~~~~~~~i~~wl~~~l 714 (715)
.+. ...+......+|+.+.+
T Consensus 686 ~~~~k~~~E~a~~yaFl~K~~ 706 (712)
T KOG2237|consen 686 KPRFKQIEEAAFRYAFLAKML 706 (712)
T ss_pred CchHHHHHHHHHHHHHHHHHh
Confidence 432 22333445667776543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=229.81 Aligned_cols=250 Identities=13% Similarity=0.115 Sum_probs=187.3
Q ss_pred cceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccc
Q 005093 13 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHG 91 (715)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 91 (715)
++...||++|.++ .++++||... ..+..|+|||||++|||++..+ +..++|.++ .+|+.++++......
T Consensus 179 ~~~~~l~~~d~dg--~~~~~lt~~~-----~~v~~p~wSpDG~~lay~s~~~-g~~~i~~~dl~~g~~~~l~~~~g~~-- 248 (435)
T PRK05137 179 KRIKRLAIMDQDG--ANVRYLTDGS-----SLVLTPRFSPNRQEITYMSYAN-GRPRVYLLDLETGQRELVGNFPGMT-- 248 (435)
T ss_pred CcceEEEEECCCC--CCcEEEecCC-----CCeEeeEECCCCCEEEEEEecC-CCCEEEEEECCCCcEEEeecCCCcc--
Confidence 3477999977744 4557777655 5689999999999999998765 567888887 677777776544333
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
..++|||||++|+|..... +..+||++|+++
T Consensus 249 --------~~~~~SPDG~~la~~~~~~-----------------------------------------g~~~Iy~~d~~~ 279 (435)
T PRK05137 249 --------FAPRFSPDGRKVVMSLSQG-----------------------------------------GNTDIYTMDLRS 279 (435)
T ss_pred --------cCcEECCCCCEEEEEEecC-----------------------------------------CCceEEEEECCC
Confidence 6899999999999975432 237899999999
Q ss_pred CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC
Q 005093 172 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 251 (715)
Q Consensus 172 g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (715)
++.+++ +........+.|||||+. |+|.+...+ ..+||++|+ .++
T Consensus 280 ~~~~~L--t~~~~~~~~~~~spDG~~----i~f~s~~~g------------~~~Iy~~d~-----------------~g~ 324 (435)
T PRK05137 280 GTTTRL--TDSPAIDTSPSYSPDGSQ----IVFESDRSG------------SPQLYVMNA-----------------DGS 324 (435)
T ss_pred CceEEc--cCCCCccCceeEcCCCCE----EEEEECCCC------------CCeEEEEEC-----------------CCC
Confidence 999999 444444567899999999 999874322 248999997 788
Q ss_pred CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccc
Q 005093 252 PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 331 (715)
Q Consensus 252 ~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~ 331 (715)
..++++...+....|.|||||++|+|.+... +..+|+++++.++..+.++.+.
T Consensus 325 ~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~--------~~~~i~~~d~~~~~~~~lt~~~------------------- 377 (435)
T PRK05137 325 NPRRISFGGGRYSTPVWSPRGDLIAFTKQGG--------GQFSIGVMKPDGSGERILTSGF------------------- 377 (435)
T ss_pred CeEEeecCCCcccCeEECCCCCEEEEEEcCC--------CceEEEEEECCCCceEeccCCC-------------------
Confidence 8889987666677899999999999998653 2357999998776655444221
Q ss_pred cCCCCCCccccCCCEEEEEeeeCCe---eEEEEEECCCCcEEEecCCCCCceeEEEee
Q 005093 332 SSSILSNPWLSDGCTMLLSSIWGSS---QVIISVNVSSGELLRITPAESNFSWSLLTL 386 (715)
Q Consensus 332 ~~~~~~~~~~~dg~~l~~~~~~~~~---~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~ 386 (715)
....+.|+|||+.|+|.+...+. ..||.+|++++..+++.. .+....+.|++
T Consensus 378 --~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 378 --LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT-PGDASDPAWSP 432 (435)
T ss_pred --CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC-CCCccCcccCC
Confidence 23467899999999998876554 589999998888877764 33333444443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=227.48 Aligned_cols=251 Identities=17% Similarity=0.178 Sum_probs=187.0
Q ss_pred cceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccc
Q 005093 13 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHG 91 (715)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 91 (715)
++...||+.|.++. +..+||..+ ..+..|+|||||++|+|++..+ +..++|.++ .+|+.++++......
T Consensus 195 ~~~~~l~i~d~dG~--~~~~l~~~~-----~~~~~p~wSPDG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~-- 264 (448)
T PRK04792 195 KYPYQLMIADYDGY--NEQMLLRSP-----EPLMSPAWSPDGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGIN-- 264 (448)
T ss_pred CCceEEEEEeCCCC--CceEeecCC-----CcccCceECCCCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCc--
Confidence 45678998766554 446676665 5678999999999999998765 667899988 677776666544332
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
..++|||||++|+|..... +..+||++|+++
T Consensus 265 --------~~~~wSPDG~~La~~~~~~-----------------------------------------g~~~Iy~~dl~t 295 (448)
T PRK04792 265 --------GAPRFSPDGKKLALVLSKD-----------------------------------------GQPEIYVVDIAT 295 (448)
T ss_pred --------CCeeECCCCCEEEEEEeCC-----------------------------------------CCeEEEEEECCC
Confidence 5789999999999975432 236899999999
Q ss_pred CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC
Q 005093 172 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 251 (715)
Q Consensus 172 g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (715)
++.+++ +........+.|||||+. |+|++... ...+||.+|+ .++
T Consensus 296 g~~~~l--t~~~~~~~~p~wSpDG~~----I~f~s~~~------------g~~~Iy~~dl-----------------~~g 340 (448)
T PRK04792 296 KALTRI--TRHRAIDTEPSWHPDGKS----LIFTSERG------------GKPQIYRVNL-----------------ASG 340 (448)
T ss_pred CCeEEC--ccCCCCccceEECCCCCE----EEEEECCC------------CCceEEEEEC-----------------CCC
Confidence 999998 444445567899999999 99987432 2248999997 778
Q ss_pred CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccc
Q 005093 252 PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 331 (715)
Q Consensus 252 ~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~ 331 (715)
+.++++........|.|||||++|+|.+... ...+||++|+.+++.+.++...
T Consensus 341 ~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~--------g~~~I~~~dl~~g~~~~lt~~~------------------- 393 (448)
T PRK04792 341 KVSRLTFEGEQNLGGSITPDGRSMIMVNRTN--------GKFNIARQDLETGAMQVLTSTR------------------- 393 (448)
T ss_pred CEEEEecCCCCCcCeeECCCCCEEEEEEecC--------CceEEEEEECCCCCeEEccCCC-------------------
Confidence 8888875444456799999999999987653 2457999999887765555321
Q ss_pred cCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEee
Q 005093 332 SSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 386 (715)
Q Consensus 332 ~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~ 386 (715)
....+.|+|||+.|++++..++...||.++.+++..++++...+....+.|+|
T Consensus 394 --~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 394 --LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCC
Confidence 01245799999999999988888889999997666777765544344445543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=222.90 Aligned_cols=244 Identities=9% Similarity=0.008 Sum_probs=181.8
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCce-EEEEecCCCCCCeEEEEe-cCCccEEEEecCccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK-LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHG 91 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~-la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 91 (715)
+...||+.|.++.+ +.+++.. +....|+|||||++ ++|++..+ +..++|.++ .+|+.++++......
T Consensus 167 ~~~~l~~~d~dg~~--~~~~~~~------~~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~tg~~~~lt~~~g~~-- 235 (419)
T PRK04043 167 KKSNIVLADYTLTY--QKVIVKG------GLNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYTGKKEKIASSQGML-- 235 (419)
T ss_pred CcceEEEECCCCCc--eeEEccC------CCeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCCCcEEEEecCCCcE--
Confidence 46899997776654 4555543 23578999999997 66666553 567999999 788888887643333
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
..+.|||||++|+|..... +..+||++|+++
T Consensus 236 --------~~~~~SPDG~~la~~~~~~-----------------------------------------g~~~Iy~~dl~~ 266 (419)
T PRK04043 236 --------VVSDVSKDGSKLLLTMAPK-----------------------------------------GQPDIYLYDTNT 266 (419)
T ss_pred --------EeeEECCCCCEEEEEEccC-----------------------------------------CCcEEEEEECCC
Confidence 5688999999999986532 237899999999
Q ss_pred CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC
Q 005093 172 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 251 (715)
Q Consensus 172 g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (715)
++.++++ ........+.|||||++ |+|+++.. ...+||++|+ +++
T Consensus 267 g~~~~LT--~~~~~d~~p~~SPDG~~----I~F~Sdr~------------g~~~Iy~~dl-----------------~~g 311 (419)
T PRK04043 267 KTLTQIT--NYPGIDVNGNFVEDDKR----IVFVSDRL------------GYPNIFMKKL-----------------NSG 311 (419)
T ss_pred CcEEEcc--cCCCccCccEECCCCCE----EEEEECCC------------CCceEEEEEC-----------------CCC
Confidence 9999994 44333456789999999 99998542 2248999998 788
Q ss_pred CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccc
Q 005093 252 PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 331 (715)
Q Consensus 252 ~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~ 331 (715)
+.++++.... ..+.|||||++|+|++...... ......+||++|++++..++||...
T Consensus 312 ~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~--~~~~~~~I~v~d~~~g~~~~LT~~~------------------- 368 (419)
T PRK04043 312 SVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNE--FGKNTFNLYLISTNSDYIRRLTANG------------------- 368 (419)
T ss_pred CeEeCccCCC--cCceECCCCCEEEEEEcCCCcc--cCCCCcEEEEEECCCCCeEECCCCC-------------------
Confidence 8888886433 2469999999999999764211 0012368999999998887777532
Q ss_pred cCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 005093 332 SSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 377 (715)
Q Consensus 332 ~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 377 (715)
....+.|+|||+.|+|.+..++...|+.+++++....++....+
T Consensus 369 --~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 369 --VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred --CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 11246799999999999888888889999997777777765444
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=224.67 Aligned_cols=250 Identities=15% Similarity=0.164 Sum_probs=184.3
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGS 92 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 92 (715)
....||.+|.++ .++.+++... ..+..|+|||||++|||++..+ +..++|..+ .+|+..+++......
T Consensus 174 ~~~~L~~~D~dG--~~~~~l~~~~-----~~v~~p~wSPDG~~la~~s~~~-~~~~I~~~dl~~g~~~~l~~~~g~~--- 242 (427)
T PRK02889 174 NRYQLQISDADG--QNAQSALSSP-----EPIISPAWSPDGTKLAYVSFES-KKPVVYVHDLATGRRRVVANFKGSN--- 242 (427)
T ss_pred CccEEEEECCCC--CCceEeccCC-----CCcccceEcCCCCEEEEEEccC-CCcEEEEEECCCCCEEEeecCCCCc---
Confidence 356899976643 4456666544 5678999999999999998764 567888877 677777766544333
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 172 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 172 (715)
..++|||||++|+|..... +..+||++|++++
T Consensus 243 -------~~~~~SPDG~~la~~~~~~-----------------------------------------g~~~Iy~~d~~~~ 274 (427)
T PRK02889 243 -------SAPAWSPDGRTLAVALSRD-----------------------------------------GNSQIYTVNADGS 274 (427)
T ss_pred -------cceEECCCCCEEEEEEccC-----------------------------------------CCceEEEEECCCC
Confidence 5899999999999975432 2378999999999
Q ss_pred ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 173 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
+.+++ +........+.|||||+. |+|+++..+ ..+||.+++ .++.
T Consensus 275 ~~~~l--t~~~~~~~~~~wSpDG~~----l~f~s~~~g------------~~~Iy~~~~-----------------~~g~ 319 (427)
T PRK02889 275 GLRRL--TQSSGIDTEPFFSPDGRS----IYFTSDRGG------------APQIYRMPA-----------------SGGA 319 (427)
T ss_pred CcEEC--CCCCCCCcCeEEcCCCCE----EEEEecCCC------------CcEEEEEEC-----------------CCCc
Confidence 98888 444334567899999999 999874322 247999997 6777
Q ss_pred ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccccc
Q 005093 253 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 332 (715)
Q Consensus 253 ~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~ 332 (715)
.++++........|.|||||++|+|.+... ...+|+++|+.+++.+.++...
T Consensus 320 ~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~--------g~~~I~v~d~~~g~~~~lt~~~-------------------- 371 (427)
T PRK02889 320 AQRVTFTGSYNTSPRISPDGKLLAYISRVG--------GAFKLYVQDLATGQVTALTDTT-------------------- 371 (427)
T ss_pred eEEEecCCCCcCceEECCCCCEEEEEEccC--------CcEEEEEEECCCCCeEEccCCC--------------------
Confidence 777775555566799999999999998763 2357999999887766665321
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEee
Q 005093 333 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 386 (715)
Q Consensus 333 ~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~ 386 (715)
....+.|+|||+.|++.+..++...|+.++++++..+++....+....+.|+|
T Consensus 372 -~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 372 -RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred -CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCC
Confidence 12356899999999999998888889999996555666654444444445544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-24 Score=225.80 Aligned_cols=252 Identities=15% Similarity=0.126 Sum_probs=187.4
Q ss_pred cccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccc
Q 005093 11 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTV 89 (715)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 89 (715)
.++....||++|.++ .++.+||... ..+..|+|||||++|||++..+ +..++|.++ .+|+.++++......
T Consensus 179 ~~~~~~~l~i~D~~g--~~~~~lt~~~-----~~v~~p~wSpDg~~la~~s~~~-~~~~l~~~dl~~g~~~~l~~~~g~~ 250 (433)
T PRK04922 179 GGAMRYALQVADSDG--YNPQTILRSA-----EPILSPAWSPDGKKLAYVSFER-GRSAIYVQDLATGQRELVASFRGIN 250 (433)
T ss_pred CCCceEEEEEECCCC--CCceEeecCC-----CccccccCCCCCCEEEEEecCC-CCcEEEEEECCCCCEEEeccCCCCc
Confidence 344677899977754 4556776654 5678999999999999998664 567888888 677776666543322
Q ss_pred cccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEc
Q 005093 90 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 169 (715)
Q Consensus 90 ~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 169 (715)
..++|||||++|+|..... +..+||++|+
T Consensus 251 ----------~~~~~SpDG~~l~~~~s~~-----------------------------------------g~~~Iy~~d~ 279 (433)
T PRK04922 251 ----------GAPSFSPDGRRLALTLSRD-----------------------------------------GNPEIYVMDL 279 (433)
T ss_pred ----------cCceECCCCCEEEEEEeCC-----------------------------------------CCceEEEEEC
Confidence 5789999999999976432 2368999999
Q ss_pred cCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCC
Q 005093 170 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 249 (715)
Q Consensus 170 ~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (715)
++++.+++ +........+.|||||+. |+|.++..+ ..+||.+++ .
T Consensus 280 ~~g~~~~l--t~~~~~~~~~~~spDG~~----l~f~sd~~g------------~~~iy~~dl-----------------~ 324 (433)
T PRK04922 280 GSRQLTRL--TNHFGIDTEPTWAPDGKS----IYFTSDRGG------------RPQIYRVAA-----------------S 324 (433)
T ss_pred CCCCeEEC--ccCCCCccceEECCCCCE----EEEEECCCC------------CceEEEEEC-----------------C
Confidence 99999988 343334457899999999 999874322 237999997 7
Q ss_pred CCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccc
Q 005093 250 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 329 (715)
Q Consensus 250 ~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g 329 (715)
+++.++++........|+|||||++|+|.+... ...+|+++|+.+++.+.++.+.
T Consensus 325 ~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~--------~~~~I~v~d~~~g~~~~Lt~~~----------------- 379 (433)
T PRK04922 325 GGSAERLTFQGNYNARASVSPDGKKIAMVHGSG--------GQYRIAVMDLSTGSVRTLTPGS----------------- 379 (433)
T ss_pred CCCeEEeecCCCCccCEEECCCCCEEEEEECCC--------CceeEEEEECCCCCeEECCCCC-----------------
Confidence 778888876555566799999999999987642 2357999999887776665332
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEe
Q 005093 330 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLT 385 (715)
Q Consensus 330 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s 385 (715)
....+.|+|||+.|+|.+...+...||.++++++..++++...+....+.|+
T Consensus 380 ----~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~ws 431 (433)
T PRK04922 380 ----LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWS 431 (433)
T ss_pred ----CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccC
Confidence 1234679999999999998888889999999877777776544433334444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=223.83 Aligned_cols=248 Identities=16% Similarity=0.169 Sum_probs=183.5
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 93 (715)
...||++|.++. +..+++... ..+..|+|||||++|||++..+ +..++|.++ .+|+.++++......
T Consensus 178 ~~~l~~~d~~g~--~~~~l~~~~-----~~~~~p~wSpDG~~la~~s~~~-~~~~l~~~~l~~g~~~~l~~~~g~~---- 245 (430)
T PRK00178 178 RYTLQRSDYDGA--RAVTLLQSR-----EPILSPRWSPDGKRIAYVSFEQ-KRPRIFVQNLDTGRREQITNFEGLN---- 245 (430)
T ss_pred ceEEEEECCCCC--CceEEecCC-----CceeeeeECCCCCEEEEEEcCC-CCCEEEEEECCCCCEEEccCCCCCc----
Confidence 336888766544 446665544 4578999999999999998765 567899888 677777766543322
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 173 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 173 (715)
..++|||||++|+|..... +..+||++|+++++
T Consensus 246 ------~~~~~SpDG~~la~~~~~~-----------------------------------------g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 246 ------GAPAWSPDGSKLAFVLSKD-----------------------------------------GNPEIYVMDLASRQ 278 (430)
T ss_pred ------CCeEECCCCCEEEEEEccC-----------------------------------------CCceEEEEECCCCC
Confidence 5799999999999976432 22689999999999
Q ss_pred eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc
Q 005093 174 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 253 (715)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (715)
.+++ +........+.|||||+. |+|.+... ...+||.+++ .+++.
T Consensus 279 ~~~l--t~~~~~~~~~~~spDg~~----i~f~s~~~------------g~~~iy~~d~-----------------~~g~~ 323 (430)
T PRK00178 279 LSRV--TNHPAIDTEPFWGKDGRT----LYFTSDRG------------GKPQIYKVNV-----------------NGGRA 323 (430)
T ss_pred eEEc--ccCCCCcCCeEECCCCCE----EEEEECCC------------CCceEEEEEC-----------------CCCCE
Confidence 9988 444444567899999999 99987432 2247999997 77888
Q ss_pred eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccC
Q 005093 254 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 333 (715)
Q Consensus 254 ~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~ 333 (715)
++++........|.|||||++|+|.+... ...+|+++|+.+++.+.++...
T Consensus 324 ~~lt~~~~~~~~~~~Spdg~~i~~~~~~~--------~~~~l~~~dl~tg~~~~lt~~~--------------------- 374 (430)
T PRK00178 324 ERVTFVGNYNARPRLSADGKTLVMVHRQD--------GNFHVAAQDLQRGSVRILTDTS--------------------- 374 (430)
T ss_pred EEeecCCCCccceEECCCCCEEEEEEccC--------CceEEEEEECCCCCEEEccCCC---------------------
Confidence 88876555566799999999999998653 2457999999988776665321
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEe
Q 005093 334 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLT 385 (715)
Q Consensus 334 ~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s 385 (715)
....+.|+|||+.++|++...+...||.+++.++..+++....+....+.|+
T Consensus 375 ~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws 426 (430)
T PRK00178 375 LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSWS 426 (430)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccC
Confidence 1124579999999999998888889999999766666776544433334444
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=216.60 Aligned_cols=245 Identities=13% Similarity=0.113 Sum_probs=186.9
Q ss_pred CCceEEEEecCCCC---CCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 005093 53 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 128 (715)
Q Consensus 53 dg~~la~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 128 (715)
-+.+|||+++..+. ..++|.++ +++..++++...... ..++|||||++|+|++...
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v----------~~p~wSpDG~~lay~s~~~---------- 223 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLV----------LTPRFSPNRQEITYMSYAN---------- 223 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCe----------EeeEECCCCCEEEEEEecC----------
Confidence 45689999876532 45788777 566677777544333 7899999999999986532
Q ss_pred CCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeec
Q 005093 129 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 208 (715)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~ 208 (715)
+..+||++|+++|+.+++ +........++|||||++ |+|+...
T Consensus 224 -------------------------------g~~~i~~~dl~~g~~~~l--~~~~g~~~~~~~SPDG~~----la~~~~~ 266 (435)
T PRK05137 224 -------------------------------GRPRVYLLDLETGQRELV--GNFPGMTFAPRFSPDGRK----VVMSLSQ 266 (435)
T ss_pred -------------------------------CCCEEEEEECCCCcEEEe--ecCCCcccCcEECCCCCE----EEEEEec
Confidence 237899999999999888 333335568899999999 9998642
Q ss_pred CccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCC
Q 005093 209 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 288 (715)
Q Consensus 209 ~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~ 288 (715)
+ .+.+||++|+ +++..++|+........|.|||||++|+|.+.+.
T Consensus 267 ~------------g~~~Iy~~d~-----------------~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~------ 311 (435)
T PRK05137 267 G------------GNTDIYTMDL-----------------RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS------ 311 (435)
T ss_pred C------------CCceEEEEEC-----------------CCCceEEccCCCCccCceeEcCCCCEEEEEECCC------
Confidence 2 3358999997 7888899998777778899999999999998764
Q ss_pred ccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 005093 289 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 368 (715)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~ 368 (715)
+..+||++|+.+++.++++... .....+.|+|||+.|++.....+..+|+.+|++++.
T Consensus 312 --g~~~Iy~~d~~g~~~~~lt~~~--------------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 312 --GSPQLYVMNADGSNPRRISFGG--------------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred --CCCeEEEEECCCCCeEEeecCC--------------------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 2357999999887766665321 023456799999999998876677899999998888
Q ss_pred EEEecCCCCCceeEEEeecCCEEEEEEeCCCCC--CeEEEEeeccc
Q 005093 369 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV--PQVKYGYFVDK 412 (715)
Q Consensus 369 ~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p--~~l~~~~~~~~ 412 (715)
.+.++... ......|++||+.|+++....... ..|++++++++
T Consensus 370 ~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 370 ERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 77776543 344578999999999988766553 57999987654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=210.95 Aligned_cols=252 Identities=14% Similarity=0.143 Sum_probs=180.7
Q ss_pred EeeCCCCceEEEEecCCC-----CCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeE--EEEeecCC
Q 005093 48 VVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLI--AYVAEEPS 119 (715)
Q Consensus 48 ~~~Spdg~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~l--a~~~~~~~ 119 (715)
+.++ +++|||+....+ ....+|.++ +++..+++|...... ..++|||||+++ +|++...
T Consensus 142 ~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~----------~sP~wSPDG~~~~~~y~S~~~- 208 (428)
T PRK01029 142 PGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLS----------ITPTWMHIGSGFPYLYVSYKL- 208 (428)
T ss_pred Cccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCc----------ccceEccCCCceEEEEEEccC-
Confidence 4444 899999986532 145788888 777888887643333 689999999984 4565432
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCc
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
+..+||++++++|+.++++ ........++|||||++
T Consensus 209 ----------------------------------------g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPDG~~-- 244 (428)
T PRK01029 209 ----------------------------------------GVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPRKKL-- 244 (428)
T ss_pred ----------------------------------------CCceEEEEECCCCCceEee--cCCCCccceEECCCCCE--
Confidence 2378999999999999994 44444557899999999
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEE--ecccccchhhhhhhhccCCCCCCceecCCCC-ccccceeEcCCCCeEE
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAV--RVSLYKSEASELELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLV 276 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-~~~~~~~~spdg~~l~ 276 (715)
|+|+....+ ..+||+. +++. ..++..++++... .....|+|||||++|+
T Consensus 245 --Laf~s~~~g------------~~di~~~~~~~~~--------------g~~g~~~~lt~~~~~~~~~p~wSPDG~~La 296 (428)
T PRK01029 245 --LAFISDRYG------------NPDLFIQSFSLET--------------GAIGKPRRLLNEAFGTQGNPSFSPDGTRLV 296 (428)
T ss_pred --EEEEECCCC------------CcceeEEEeeccc--------------CCCCcceEeecCCCCCcCCeEECCCCCEEE
Confidence 999874322 2356664 4310 0135667788654 3457899999999999
Q ss_pred EEecCCCCCCCCccccceeEeeecCCC--CCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeC
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTN--GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 354 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~--~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~ 354 (715)
|.+.+. +..+||++++... ..++++... .....+.|+|||+.|+|.....
T Consensus 297 f~s~~~--------g~~~ly~~~~~~~g~~~~~lt~~~--------------------~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 297 FVSNKD--------GRPRIYIMQIDPEGQSPRLLTKKY--------------------RNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred EEECCC--------CCceEEEEECcccccceEEeccCC--------------------CCccceeECCCCCEEEEEEcCC
Confidence 998764 2357999988642 233343211 0234678999999999988877
Q ss_pred CeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 355 SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 355 ~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
+...|+.+|+++|+.++++..........|++||+.|+++.... ....||+.++.+++
T Consensus 349 g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g~ 406 (428)
T PRK01029 349 GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITKK 406 (428)
T ss_pred CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCC
Confidence 77899999999999999987654445578999999999887643 34679998886553
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-22 Score=207.72 Aligned_cols=239 Identities=11% Similarity=0.044 Sum_probs=179.5
Q ss_pred ceEEEEec-CCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCe-EEEEeecCCCCCCCccCCCCC
Q 005093 55 SKLLVVRN-PENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSKPTFSLGSTK 131 (715)
Q Consensus 55 ~~la~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~-la~~~~~~~~~~~~~~~~~~~ 131 (715)
.++||+.. .+....+++.++ ++...+.++.. ... ..+.|||||++ ++|.+...
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~-~~~----------~~p~wSpDG~~~i~y~s~~~------------- 210 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG-GLN----------IFPKWANKEQTAFYYTSYGE------------- 210 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccC-CCe----------EeEEECCCCCcEEEEEEccC-------------
Confidence 57777765 332367888888 55555555543 222 58999999997 55554431
Q ss_pred CCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 005093 132 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 211 (715)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~ 211 (715)
+.++||++|+.+|+.+++ +........+.|||||++ |+|+....
T Consensus 211 ----------------------------~~~~Iyv~dl~tg~~~~l--t~~~g~~~~~~~SPDG~~----la~~~~~~-- 254 (419)
T PRK04043 211 ----------------------------RKPTLYKYNLYTGKKEKI--ASSQGMLVVSDVSKDGSK----LLLTMAPK-- 254 (419)
T ss_pred ----------------------------CCCEEEEEECCCCcEEEE--ecCCCcEEeeEECCCCCE----EEEEEccC--
Confidence 237899999999999999 444434556889999999 99987432
Q ss_pred ceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccc
Q 005093 212 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 291 (715)
Q Consensus 212 ~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~ 291 (715)
.+.+||++|+ .++..++||........|.|||||++|+|++++. +
T Consensus 255 ----------g~~~Iy~~dl-----------------~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~--------g 299 (419)
T PRK04043 255 ----------GQPDIYLYDT-----------------NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL--------G 299 (419)
T ss_pred ----------CCcEEEEEEC-----------------CCCcEEEcccCCCccCccEECCCCCEEEEEECCC--------C
Confidence 3458999997 7888999998777677899999999999999874 2
Q ss_pred cceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeC------CeeEEEEEECC
Q 005093 292 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVS 365 (715)
Q Consensus 292 ~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~------~~~~l~~~d~~ 365 (715)
..+||++|+.+++.++++... .....|+|||+.|+++.... +..+||.+|++
T Consensus 300 ~~~Iy~~dl~~g~~~rlt~~g----------------------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVVFHG----------------------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CceEEEEECCCCCeEeCccCC----------------------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 468999999988876665321 11347999999999988654 33689999999
Q ss_pred CCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 366 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 366 tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+|+.++|+.... ...+.|+|||+.|+++... ..-..|+.++++..
T Consensus 358 ~g~~~~LT~~~~-~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 358 SDYIRRLTANGV-NQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCCeEECCCCCC-cCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 999999998643 2347899999999998765 44556888887643
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-22 Score=192.70 Aligned_cols=224 Identities=13% Similarity=0.088 Sum_probs=152.2
Q ss_pred ccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCC-CCCchhhhhcCCCC
Q 005093 457 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGK 535 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~-~~~g~~~~~~~~~~ 535 (715)
....+|..|.||+..|++. ..++.++||++||-... ...+...+.+|+++||.|+.+|+||. |+++.++...
T Consensus 14 ~~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~--~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~---- 86 (307)
T PRK13604 14 ICLENGQSIRVWETLPKEN-SPKKNNTILIASGFARR--MDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEF---- 86 (307)
T ss_pred EEcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCC--hHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccC----
Confidence 3456899999999999742 35678899999995443 23477889999999999999999875 5544433211
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeecc
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 615 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (715)
.......|+.++++|+.++. .++|+|+||||||.+++.+|.. + .++++|+.||+.++.......-...+......
T Consensus 87 t~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~~~~~~~~~p~~ 161 (307)
T PRK13604 87 TMSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERALGYDYLSLPID 161 (307)
T ss_pred cccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHhhhcccccCccc
Confidence 11123789999999998863 4689999999999998766653 3 49999999999986533321000000000000
Q ss_pred CCCCCCCCCCCCC--hhhHHHH------HhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeC
Q 005093 616 GSKGKDSFTESPS--VEDLTRF------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 687 (715)
Q Consensus 616 ~~~~~~~~~~~~~--~~~~~~~------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (715)
.......+.+... ....... ...+|+..+.+++.|+|++||+.|..||++.+++++++++. .++++++++
T Consensus 162 ~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kkl~~i~ 239 (307)
T PRK13604 162 ELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCKLYSLI 239 (307)
T ss_pred ccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcEEEEeC
Confidence 0000000111111 0111111 12455677888899999999999999999999999998753 468899999
Q ss_pred CCCccCC
Q 005093 688 NDVHGIE 694 (715)
Q Consensus 688 ~~~H~~~ 694 (715)
|+.|.+.
T Consensus 240 Ga~H~l~ 246 (307)
T PRK13604 240 GSSHDLG 246 (307)
T ss_pred CCccccC
Confidence 9999886
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=204.90 Aligned_cols=241 Identities=17% Similarity=0.156 Sum_probs=180.5
Q ss_pred ceEEEEecCCCC--CCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCC
Q 005093 55 SKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 131 (715)
Q Consensus 55 ~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 131 (715)
++|||+....++ ..+++.++ +++..++++...... ..++|||||++|+|++...
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~----------~~p~wSPDG~~la~~s~~~------------- 220 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 220 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCce----------eeeEEcCCCCEEEEEEecC-------------
Confidence 789999875322 45677777 566677776543333 6899999999999986432
Q ss_pred CCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 005093 132 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 211 (715)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~ 211 (715)
+..+||++++++|+.+.+ +........+.|||||+. |+|+....
T Consensus 221 ----------------------------g~~~i~i~dl~~G~~~~l--~~~~~~~~~~~~SPDG~~----La~~~~~~-- 264 (429)
T PRK03629 221 ----------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSKT-- 264 (429)
T ss_pred ----------------------------CCcEEEEEECCCCCeEEc--cCCCCCcCCeEECCCCCE----EEEEEcCC--
Confidence 237899999999998888 333334567899999999 99986422
Q ss_pred ceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccc
Q 005093 212 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 291 (715)
Q Consensus 212 ~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~ 291 (715)
...+||++|+ ++++.++++........|.|||||++|+|.+.+. +
T Consensus 265 ----------g~~~I~~~d~-----------------~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~--------g 309 (429)
T PRK03629 265 ----------GSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA--------G 309 (429)
T ss_pred ----------CCcEEEEEEC-----------------CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC--------C
Confidence 2247999997 7888899998777788999999999999999764 2
Q ss_pred cceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 005093 292 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 371 (715)
Q Consensus 292 ~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 371 (715)
..+||++++.+++.++++... .....+.|+|||+.|++.....+...|+.+|+++++.+.
T Consensus 310 ~~~Iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 310 RPQVYKVNINGGAPQRITWEG--------------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred CceEEEEECCCCCeEEeecCC--------------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 358999999887665554211 012356799999999998877777889999999999999
Q ss_pred ecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 372 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 372 l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
|+.... .....|++||..|++...... ...+++.+++.
T Consensus 370 Lt~~~~-~~~p~~SpDG~~i~~~s~~~~-~~~l~~~~~~G 407 (429)
T PRK03629 370 LTDTFL-DETPSIAPNGTMVIYSSSQGM-GSVLNLVSTDG 407 (429)
T ss_pred eCCCCC-CCCceECCCCCEEEEEEcCCC-ceEEEEEECCC
Confidence 886432 234689999999998876433 34577777643
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=204.57 Aligned_cols=239 Identities=17% Similarity=0.193 Sum_probs=179.1
Q ss_pred ceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC
Q 005093 55 SKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 133 (715)
Q Consensus 55 ~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 133 (715)
.+|||+...+ +..+++.++ ++...++++...... ..++|||||++|+|.+...
T Consensus 164 ~~iayv~~~~-~~~~L~~~D~dG~~~~~l~~~~~~v----------~~p~wSPDG~~la~~s~~~--------------- 217 (427)
T PRK02889 164 TRIAYVIKTG-NRYQLQISDADGQNAQSALSSPEPI----------ISPAWSPDGTKLAYVSFES--------------- 217 (427)
T ss_pred cEEEEEEccC-CccEEEEECCCCCCceEeccCCCCc----------ccceEcCCCCEEEEEEccC---------------
Confidence 6799998653 556788777 454556666443333 7899999999999986432
Q ss_pred CCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccce
Q 005093 134 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 213 (715)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~ 213 (715)
...+||++|+++|+.+++ +........++|||||++ |+|+...+
T Consensus 218 --------------------------~~~~I~~~dl~~g~~~~l--~~~~g~~~~~~~SPDG~~----la~~~~~~---- 261 (427)
T PRK02889 218 --------------------------KKPVVYVHDLATGRRRVV--ANFKGSNSAPAWSPDGRT----LAVALSRD---- 261 (427)
T ss_pred --------------------------CCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCE----EEEEEccC----
Confidence 237799999999998888 333334567899999999 99976322
Q ss_pred eeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccc
Q 005093 214 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 293 (715)
Q Consensus 214 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~ 293 (715)
...+||.+|+ .++..++++........|.|||||++|+|.+++. +..
T Consensus 262 --------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~--------g~~ 308 (427)
T PRK02889 262 --------GNSQIYTVNA-----------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG--------GAP 308 (427)
T ss_pred --------CCceEEEEEC-----------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCC--------CCc
Confidence 2358999997 7778889988776678899999999999998763 235
Q ss_pred eeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 294 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 294 ~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
+||.+++.++..++++... .....+.|+|||+.|++.+...+...|+.+|+.+++.++++
T Consensus 309 ~Iy~~~~~~g~~~~lt~~g--------------------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 309 QIYRMPASGGAAQRVTFTG--------------------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEEEECCCCceEEEecCC--------------------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 7999998776654443111 01235679999999998887777778999999999999887
Q ss_pred CCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 374 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 374 ~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
..... ....|+++++.|++....... ..++..+++
T Consensus 369 ~~~~~-~~p~~spdg~~l~~~~~~~g~-~~l~~~~~~ 403 (427)
T PRK02889 369 DTTRD-ESPSFAPNGRYILYATQQGGR-SVLAAVSSD 403 (427)
T ss_pred CCCCc-cCceECCCCCEEEEEEecCCC-EEEEEEECC
Confidence 65332 446899999999998876554 568877764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-21 Score=205.04 Aligned_cols=243 Identities=14% Similarity=0.131 Sum_probs=172.0
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGS 92 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 92 (715)
+...||++|.++.+ ..+|+... ..+..|+|||||++|||++..+ +..+++..+ .+|+.+.++......
T Consensus 182 ~~~~i~i~d~dg~~--~~~lt~~~-----~~v~~p~wSPDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~--- 250 (429)
T PRK01742 182 QPYEVRVADYDGFN--QFIVNRSS-----QPLMSPAWSPDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHN--- 250 (429)
T ss_pred ceEEEEEECCCCCC--ceEeccCC-----CccccceEcCCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCcc---
Confidence 45789998776554 45555544 5678999999999999998654 566788777 666666665443322
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 172 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 172 (715)
..++|||||++|+|..... +..+||++|++++
T Consensus 251 -------~~~~wSPDG~~La~~~~~~-----------------------------------------g~~~Iy~~d~~~~ 282 (429)
T PRK01742 251 -------GAPAFSPDGSRLAFASSKD-----------------------------------------GVLNIYVMGANGG 282 (429)
T ss_pred -------CceeECCCCCEEEEEEecC-----------------------------------------CcEEEEEEECCCC
Confidence 5799999999999975432 1257999999999
Q ss_pred ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 173 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
+.+++ +........+.|||||+. |+|.+...+ ..+||.+++ .++.
T Consensus 283 ~~~~l--t~~~~~~~~~~wSpDG~~----i~f~s~~~g------------~~~I~~~~~-----------------~~~~ 327 (429)
T PRK01742 283 TPSQL--TSGAGNNTEPSWSPDGQS----ILFTSDRSG------------SPQVYRMSA-----------------SGGG 327 (429)
T ss_pred CeEee--ccCCCCcCCEEECCCCCE----EEEEECCCC------------CceEEEEEC-----------------CCCC
Confidence 99998 444445678999999999 999874322 248999986 5565
Q ss_pred ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccccc
Q 005093 253 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 332 (715)
Q Consensus 253 ~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~ 332 (715)
.+.++. .. ..+.|||||++|++.+.. .++++|+.++..+.++...
T Consensus 328 ~~~l~~-~~--~~~~~SpDG~~ia~~~~~------------~i~~~Dl~~g~~~~lt~~~-------------------- 372 (429)
T PRK01742 328 ASLVGG-RG--YSAQISADGKTLVMINGD------------NVVKQDLTSGSTEVLSSTF-------------------- 372 (429)
T ss_pred eEEecC-CC--CCccCCCCCCEEEEEcCC------------CEEEEECCCCCeEEecCCC--------------------
Confidence 555532 22 468999999999998642 3788898887654443221
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEee
Q 005093 333 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 386 (715)
Q Consensus 333 ~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~ 386 (715)
....+.|+|||+.|++.+.+++...++.++.+++..+++....+....+.|+|
T Consensus 373 -~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 373 -LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred -CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 12356799999999888876666667777876666777765444334445554
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-21 Score=202.31 Aligned_cols=241 Identities=16% Similarity=0.181 Sum_probs=178.6
Q ss_pred CceEEEEecCCCC--CCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCC
Q 005093 54 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 130 (715)
Q Consensus 54 g~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 130 (715)
..++||+....+. ..+++.++ ++...+.++...... ..++|||||++|+|++...
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~~p~wSPDG~~La~~s~~~------------ 239 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPL----------MSPAWSPDGRKLAYVSFEN------------ 239 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcc----------cCceECCCCCEEEEEEecC------------
Confidence 4688898765422 34666666 455566666554433 6899999999999986532
Q ss_pred CCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCc
Q 005093 131 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 210 (715)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~ 210 (715)
+..+||++|+++|+.+.++ ........+.|||||+. |+|+...+
T Consensus 240 -----------------------------g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPDG~~----La~~~~~~- 283 (448)
T PRK04792 240 -----------------------------RKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPDGKK----LALVLSKD- 283 (448)
T ss_pred -----------------------------CCcEEEEEECCCCCeEEec--CCCCCcCCeeECCCCCE----EEEEEeCC-
Confidence 2378999999999988883 33333457899999999 99986432
Q ss_pred cceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCcc
Q 005093 211 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 290 (715)
Q Consensus 211 ~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~ 290 (715)
...+||++|+ ++++.++++........|.|||||++|+|.+.+.
T Consensus 284 -----------g~~~Iy~~dl-----------------~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~-------- 327 (448)
T PRK04792 284 -----------GQPEIYVVDI-----------------ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG-------- 327 (448)
T ss_pred -----------CCeEEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC--------
Confidence 2348999997 7888899988766678899999999999998764
Q ss_pred ccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 005093 291 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 370 (715)
Q Consensus 291 ~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 370 (715)
...+||++|+.+++.++++... . ....+.|+|||+.|+|.....+..+||.+|+++++.+
T Consensus 328 g~~~Iy~~dl~~g~~~~Lt~~g-----------------~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 328 GKPQIYRVNLASGKVSRLTFEG-----------------E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred CCceEEEEECCCCCEEEEecCC-----------------C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 2358999999887765554211 0 1124579999999999887777789999999999998
Q ss_pred EecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 371 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 371 ~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
.++....+ ....|+++|+.|+++.... ....|++.+..
T Consensus 388 ~lt~~~~d-~~ps~spdG~~I~~~~~~~-g~~~l~~~~~~ 425 (448)
T PRK04792 388 VLTSTRLD-ESPSVAPNGTMVIYSTTYQ-GKQVLAAVSID 425 (448)
T ss_pred EccCCCCC-CCceECCCCCEEEEEEecC-CceEEEEEECC
Confidence 88765332 2358999999999877644 34468877764
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=192.85 Aligned_cols=226 Identities=16% Similarity=0.186 Sum_probs=149.6
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC----CC--ccc
Q 005093 467 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK----VG--SQD 540 (715)
Q Consensus 467 ~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~----~~--~~~ 540 (715)
.+.+.|.+ ..+++.|+||++||.+.. ...+...+..|+++||.|+++|+||. |.+........ +. ...
T Consensus 14 ~~~~~p~~-~~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~---G~~~~~~~~~~~~~~~~~~~~~ 87 (249)
T PRK10566 14 VLHAFPAG-QRDTPLPTVFFYHGFTSS--KLVYSYFAVALAQAGFRVIMPDAPMH---GARFSGDEARRLNHFWQILLQN 87 (249)
T ss_pred eEEEcCCC-CCCCCCCEEEEeCCCCcc--cchHHHHHHHHHhCCCEEEEecCCcc---cccCCCccccchhhHHHHHHHH
Confidence 45666763 134568999999996554 34567788899999999999999994 33211000000 00 123
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecC-CcchhhhhccCCCCCCceeeeccCCCC
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGTTDIPDWCYVESYGSKG 619 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (715)
.+|+.++++++.++..++.++|+++|||+||.+++.++.++|+...++++.. +... ...... .+. .... .
T Consensus 88 ~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~-----~~~~-~ 158 (249)
T PRK10566 88 MQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFT--SLARTL-FPP-----LIPE-T 158 (249)
T ss_pred HHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHH--HHHHHh-ccc-----cccc-c
Confidence 5778888999988877899999999999999999999988876444433322 2211 110000 000 0000 0
Q ss_pred CCCCCCCCChhhHHHHHhcCchhhccCC-CCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCc--EEEEEeCCCCccCCCC
Q 005093 620 KDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVE--TKVIVFPNDVHGIERP 696 (715)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~ 696 (715)
.... .........+...++...+.++ .+|+|++||++|.++|++++.+++++++.+|.+ ++++.+++++|.+.
T Consensus 159 ~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~-- 234 (249)
T PRK10566 159 AAQQ--AEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT-- 234 (249)
T ss_pred cccH--HHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC--
Confidence 0000 0000111223334455556666 699999999999999999999999999988864 78899999999874
Q ss_pred CchHHHHHHHHHHHHHhc
Q 005093 697 QSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 697 ~~~~~~~~~i~~wl~~~l 714 (715)
.+.+..+.+||+++|
T Consensus 235 ---~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 235 ---PEALDAGVAFFRQHL 249 (249)
T ss_pred ---HHHHHHHHHHHHhhC
Confidence 357899999999875
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=200.62 Aligned_cols=243 Identities=14% Similarity=0.136 Sum_probs=179.3
Q ss_pred CCceEEEEecCCCC---CCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 005093 53 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 128 (715)
Q Consensus 53 dg~~la~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 128 (715)
=+.+|||+....++ ..+++.++ .++..++++...... ..++|||||++|+|.+...
T Consensus 166 f~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v----------~~p~wSpDg~~la~~s~~~---------- 225 (433)
T PRK04922 166 FWTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPI----------LSPAWSPDGKKLAYVSFER---------- 225 (433)
T ss_pred ccceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCcc----------ccccCCCCCCEEEEEecCC----------
Confidence 35679998765322 23455555 455666776543333 6899999999999986432
Q ss_pred CCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeec
Q 005093 129 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 208 (715)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~ 208 (715)
+..+||++|+++|+.+.++ ........++|||||++ |+|+...
T Consensus 226 -------------------------------~~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpDG~~----l~~~~s~ 268 (433)
T PRK04922 226 -------------------------------GRSAIYVQDLATGQRELVA--SFRGINGAPSFSPDGRR----LALTLSR 268 (433)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEec--cCCCCccCceECCCCCE----EEEEEeC
Confidence 2378999999999988883 33334457899999999 9998643
Q ss_pred CccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCC
Q 005093 209 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 288 (715)
Q Consensus 209 ~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~ 288 (715)
. .+.+||++|+ .+++.++++........|.|||||++|+|.+.+.
T Consensus 269 ~------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~------ 313 (433)
T PRK04922 269 D------------GNPEIYVMDL-----------------GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG------ 313 (433)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC------
Confidence 2 2358999997 7888889987766677899999999999998764
Q ss_pred ccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 005093 289 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 368 (715)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~ 368 (715)
+..+||++++.+++.++++.... ....+.|+|||+.|++.....+...|+.+|+.+++
T Consensus 314 --g~~~iy~~dl~~g~~~~lt~~g~--------------------~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 314 --GRPQIYRVAASGGSAERLTFQGN--------------------YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred --CCceEEEEECCCCCeEEeecCCC--------------------CccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 23579999998877655542110 12356899999999998776667789999999999
Q ss_pred EEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 369 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 369 ~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
.+.++..... ....|+++|+.+++++... .-..|+..++.+
T Consensus 372 ~~~Lt~~~~~-~~p~~spdG~~i~~~s~~~-g~~~L~~~~~~g 412 (433)
T PRK04922 372 VRTLTPGSLD-ESPSFAPNGSMVLYATREG-GRGVLAAVSTDG 412 (433)
T ss_pred eEECCCCCCC-CCceECCCCCEEEEEEecC-CceEEEEEECCC
Confidence 9988865432 3468999999999988764 345688888753
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-21 Score=180.93 Aligned_cols=250 Identities=15% Similarity=0.194 Sum_probs=171.7
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
.+.+.+|..+....+.|.. ..++..+|+++||.+... ...|...+..|+..||.|+++|++| +|.+......-.
T Consensus 31 ~~~n~rG~~lft~~W~p~~--~~~pr~lv~~~HG~g~~~-s~~~~~~a~~l~~~g~~v~a~D~~G---hG~SdGl~~yi~ 104 (313)
T KOG1455|consen 31 FFTNPRGAKLFTQSWLPLS--GTEPRGLVFLCHGYGEHS-SWRYQSTAKRLAKSGFAVYAIDYEG---HGRSDGLHAYVP 104 (313)
T ss_pred eEEcCCCCEeEEEecccCC--CCCCceEEEEEcCCcccc-hhhHHHHHHHHHhCCCeEEEeeccC---CCcCCCCcccCC
Confidence 4566788889888999963 347788999999954432 3567778999999999999999999 665542222222
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc------------C
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG------------T 603 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~------------~ 603 (715)
-...-++|+...++.+..+.....-+.+++||||||.+++.++.++|..+.++|+++|++-+..-.. .
T Consensus 105 ~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~ 184 (313)
T KOG1455|consen 105 SFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTLLS 184 (313)
T ss_pred cHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHHHH
Confidence 2223377888888877776555567899999999999999999999999999999999875432111 0
Q ss_pred CCCCCceeeecc-------CC--------CCCCCCCCCCChhhHHHHHh--cCchhhccCCCCcEEEEeeCCCCcCCchH
Q 005093 604 TDIPDWCYVESY-------GS--------KGKDSFTESPSVEDLTRFHS--KSPISHISKVKTPTIFLLGAQDLRVPVSN 666 (715)
Q Consensus 604 ~~~~~~~~~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~--~sp~~~~~~i~~P~Lii~G~~D~~v~~~~ 666 (715)
.-++.|.....- .. .....+.+.+.......+.. .+...++.++..|+||+||+.|.++.+..
T Consensus 185 ~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD~VTDp~~ 264 (313)
T KOG1455|consen 185 KLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDDKVTDPKV 264 (313)
T ss_pred HhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCCCcccCcHH
Confidence 112333211100 00 00011111111111111111 11224577889999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCCccCC---CCCchHHHHHHHHHHHHHh
Q 005093 667 GLQYARALREKGVETKVIVFPNDVHGIE---RPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 667 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~wl~~~ 713 (715)
++++|+....+ +.++.+|||.-|.+. .+++.+.++..|++|++++
T Consensus 265 Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 265 SKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred HHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999988664 455779999999976 4677778999999999875
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=200.22 Aligned_cols=242 Identities=14% Similarity=0.161 Sum_probs=178.8
Q ss_pred CCceEEEEecCCC---CCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 005093 53 SGSKLLVVRNPEN---ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 128 (715)
Q Consensus 53 dg~~la~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 128 (715)
...+|||+..... +..+++.++ +++..+.++...... ..++|||||++|+|.+...
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~wSpDG~~la~~s~~~---------- 220 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPI----------LSPRWSPDGKRIAYVSFEQ---------- 220 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCce----------eeeeECCCCCEEEEEEcCC----------
Confidence 5568999875432 233566666 555666665543332 6899999999999986432
Q ss_pred CCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeec
Q 005093 129 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 208 (715)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~ 208 (715)
...+||++++++|+.+.++ ........+.|||||++ |+|+...
T Consensus 221 -------------------------------~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpDG~~----la~~~~~ 263 (430)
T PRK00178 221 -------------------------------KRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPDGSK----LAFVLSK 263 (430)
T ss_pred -------------------------------CCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCCCCE----EEEEEcc
Confidence 2378999999999998883 33334557899999999 9998743
Q ss_pred CccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCC
Q 005093 209 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 288 (715)
Q Consensus 209 ~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~ 288 (715)
. ...+||++|+ ++++.++++........|.|||||++|+|.+.+.
T Consensus 264 ~------------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~------ 308 (430)
T PRK00178 264 D------------GNPEIYVMDL-----------------ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG------ 308 (430)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC------
Confidence 2 2358999997 7888889998777778899999999999998764
Q ss_pred ccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 005093 289 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 368 (715)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~ 368 (715)
+..+||++++.+++.++++... .....+.|+|||+.|++.....+...|+.+|+++++
T Consensus 309 --g~~~iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 309 --GKPQIYKVNVNGGRAERVTFVG--------------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred --CCceEEEEECCCCCEEEeecCC--------------------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 2357999999887765554211 012346799999999998876677789999999999
Q ss_pred EEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 369 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 369 ~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
.+.++....+. ...|+++|+.++++.....+ ..|+..++.
T Consensus 367 ~~~lt~~~~~~-~p~~spdg~~i~~~~~~~g~-~~l~~~~~~ 406 (430)
T PRK00178 367 VRILTDTSLDE-SPSVAPNGTMLIYATRQQGR-GVLMLVSIN 406 (430)
T ss_pred EEEccCCCCCC-CceECCCCCEEEEEEecCCc-eEEEEEECC
Confidence 99988754333 46899999999988765433 458887764
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-21 Score=197.52 Aligned_cols=251 Identities=15% Similarity=0.185 Sum_probs=158.8
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
.+...+|..+++..+.|.+ .....++||++||.+... ...+...+..|+++||.|+++|+|| ||.+........
T Consensus 36 ~~~~~dg~~l~~~~~~~~~--~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rG---hG~S~~~~~~~~ 109 (330)
T PLN02298 36 FFTSPRGLSLFTRSWLPSS--SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEG---HGRSEGLRAYVP 109 (330)
T ss_pred eEEcCCCCEEEEEEEecCC--CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCC---CCCCCCccccCC
Confidence 3445689999998888753 224678999999965332 2245556778999999999999999 555431110001
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC-----------
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT----------- 604 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~----------- 604 (715)
......+|+.++++++......+..+++|+||||||.+++.++.++|++++++|+++|...........
T Consensus 110 ~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (330)
T PLN02298 110 NVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPWPIPQILTFVA 189 (330)
T ss_pred CHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCchHHHHHHHHHH
Confidence 112236788889998877543445689999999999999999999999999999999875432110000
Q ss_pred -CCCCceeee---ccCCC------------CCCCCCCCCChhhHHHHHh-c-CchhhccCCCCcEEEEeeCCCCcCCchH
Q 005093 605 -DIPDWCYVE---SYGSK------------GKDSFTESPSVEDLTRFHS-K-SPISHISKVKTPTIFLLGAQDLRVPVSN 666 (715)
Q Consensus 605 -~~~~~~~~~---~~~~~------------~~~~~~~~~~~~~~~~~~~-~-sp~~~~~~i~~P~Lii~G~~D~~v~~~~ 666 (715)
..+...... .+... ....+...+.......... . .....+.++++|+||+||++|.++|++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ivp~~~ 269 (330)
T PLN02298 190 RFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHGSADVVTDPDV 269 (330)
T ss_pred HHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEecCCCCCCCHHH
Confidence 000000000 00000 0000000000000000000 0 0123456788999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCCccCCCCCc---hHHHHHHHHHHHHHhc
Q 005093 667 GLQYARALREKGVETKVIVFPNDVHGIERPQS---DFESFLNIGLWFKKYC 714 (715)
Q Consensus 667 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~---~~~~~~~i~~wl~~~l 714 (715)
+..+++.+.. ...+++++++++|.+...+. ...+.+.+.+|+++++
T Consensus 270 ~~~l~~~i~~--~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 270 SRALYEEAKS--EDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERC 318 (330)
T ss_pred HHHHHHHhcc--CCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 9988887753 34678899999998764332 3457888999999875
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-21 Score=192.45 Aligned_cols=242 Identities=16% Similarity=0.172 Sum_probs=158.1
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
...+|..+.+.+|.|. ..+.|+|+++||.+.. ...|...+..|+++||.|+++|+|| +|.+..........
T Consensus 6 ~~~~g~~l~~~~~~~~----~~~~~~v~llHG~~~~--~~~~~~~~~~l~~~g~~via~D~~G---~G~S~~~~~~~~~~ 76 (276)
T PHA02857 6 FNLDNDYIYCKYWKPI----TYPKALVFISHGAGEH--SGRYEELAENISSLGILVFSHDHIG---HGRSNGEKMMIDDF 76 (276)
T ss_pred ecCCCCEEEEEeccCC----CCCCEEEEEeCCCccc--cchHHHHHHHHHhCCCEEEEccCCC---CCCCCCccCCcCCH
Confidence 4558899999999884 3456889999996543 5678888999999999999999999 55543211100111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh-------------ccCC
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VGTT 604 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~-------------~~~~ 604 (715)
...++|+.++++++.+.. ...+++|+|||+||.+++.++.++|++++++|+.+|....... ....
T Consensus 77 ~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~~ 154 (276)
T PHA02857 77 GVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYPN 154 (276)
T ss_pred HHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCCC
Confidence 112567777777765542 3468999999999999999999999999999999997542110 0000
Q ss_pred C-CCCceeeeccCCC--------CCCCC-CCCCChhhHHHHHh--cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHH
Q 005093 605 D-IPDWCYVESYGSK--------GKDSF-TESPSVEDLTRFHS--KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 672 (715)
Q Consensus 605 ~-~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~--~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~ 672 (715)
. ...+. ...+... ..... .............. ......+.++++|+|+++|++|.++|++.+..+++
T Consensus 155 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~ 233 (276)
T PHA02857 155 KIVGKLC-PESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFMQ 233 (276)
T ss_pred CccCCCC-HhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHHH
Confidence 0 00000 0000000 00000 00000000000000 01123567889999999999999999999988877
Q ss_pred HHHHcCCcEEEEEeCCCCccCCCCCc--hHHHHHHHHHHHHHhc
Q 005093 673 ALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 714 (715)
Q Consensus 673 ~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~wl~~~l 714 (715)
.+.. .+++.++++++|.+..+.. +.++++.+++||+++.
T Consensus 234 ~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 234 HANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 7633 4789999999998876544 7789999999998864
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=195.97 Aligned_cols=249 Identities=15% Similarity=0.172 Sum_probs=156.8
Q ss_pred ccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 457 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
+.+.+|.++.+..+.|. ..++.|+||++||.+... ...|...+..|+++||.|+++|+|| +|.+.........
T Consensus 66 ~~~~~g~~l~~~~~~p~---~~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G---~G~S~~~~~~~~~ 138 (349)
T PLN02385 66 EVNSRGVEIFSKSWLPE---NSRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPG---FGLSEGLHGYIPS 138 (349)
T ss_pred EEcCCCCEEEEEEEecC---CCCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCC---CCCCCCCCCCcCC
Confidence 34568899999999886 335678999999965432 1234567788999999999999999 5554311000001
Q ss_pred CccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC------------C
Q 005093 537 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT------------T 604 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~------------~ 604 (715)
....++|+.++++.+......+..+++|+||||||.+++.++.++|++++++|+++|.......... .
T Consensus 139 ~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T PLN02385 139 FDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILILLAN 218 (349)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHHHHHHHHHH
Confidence 1112566667777665543344568999999999999999999999999999999986542110000 0
Q ss_pred CCCCceee------ec-cCCC---CC-----CCCCCCCCh-hhHHHHHh-cCchhhccCCCCcEEEEeeCCCCcCCchHH
Q 005093 605 DIPDWCYV------ES-YGSK---GK-----DSFTESPSV-EDLTRFHS-KSPISHISKVKTPTIFLLGAQDLRVPVSNG 667 (715)
Q Consensus 605 ~~~~~~~~------~~-~~~~---~~-----~~~~~~~~~-~~~~~~~~-~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~ 667 (715)
..+.+... .. +... .. ..+...... ...+.+.. ......+.++++|+|++||++|.++|+..+
T Consensus 219 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D~vv~~~~~ 298 (349)
T PLN02385 219 LLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEADKVTDPSVS 298 (349)
T ss_pred HCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCCCccChHHH
Confidence 00000000 00 0000 00 000000000 00111111 111234678899999999999999999998
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCCccCCCCCc---hHHHHHHHHHHHHHhc
Q 005093 668 LQYARALREKGVETKVIVFPNDVHGIERPQS---DFESFLNIGLWFKKYC 714 (715)
Q Consensus 668 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~---~~~~~~~i~~wl~~~l 714 (715)
..+++.+.. ...+++++++++|.+...+. ...++..|++||++++
T Consensus 299 ~~l~~~~~~--~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 299 KFLYEKASS--SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred HHHHHHcCC--CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 888877643 24678899999998765443 3348889999999875
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=193.66 Aligned_cols=242 Identities=17% Similarity=0.194 Sum_probs=176.0
Q ss_pred cceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccc
Q 005093 13 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHG 91 (715)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 91 (715)
+....||+.|.++. +..+|+... ..+..|+|||||++|||+...+ +..+++.+. .+|+...+.......
T Consensus 167 ~~~~~l~~~d~~g~--~~~~l~~~~-----~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~~g~~~~~~~~~~~~-- 236 (417)
T TIGR02800 167 SRRYELQVADYDGA--NPQTITRSR-----EPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLATGQREKVASFPGMN-- 236 (417)
T ss_pred CCcceEEEEcCCCC--CCEEeecCC-----CceecccCCCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEeecCCCCc--
Confidence 45678998776543 446665543 4478899999999999997665 556788777 566665555433322
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
..++|||||++|+|..... ...+||++++++
T Consensus 237 --------~~~~~spDg~~l~~~~~~~-----------------------------------------~~~~i~~~d~~~ 267 (417)
T TIGR02800 237 --------GAPAFSPDGSKLAVSLSKD-----------------------------------------GNPDIYVMDLDG 267 (417)
T ss_pred --------cceEECCCCCEEEEEECCC-----------------------------------------CCccEEEEECCC
Confidence 5789999999999975432 236799999999
Q ss_pred CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC
Q 005093 172 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 251 (715)
Q Consensus 172 g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (715)
++.+.++ ........+.|+|||+. |+|.+...+ ..+||.+++ .++
T Consensus 268 ~~~~~l~--~~~~~~~~~~~s~dg~~----l~~~s~~~g------------~~~iy~~d~-----------------~~~ 312 (417)
T TIGR02800 268 KQLTRLT--NGPGIDTEPSWSPDGKS----IAFTSDRGG------------SPQIYMMDA-----------------DGG 312 (417)
T ss_pred CCEEECC--CCCCCCCCEEECCCCCE----EEEEECCCC------------CceEEEEEC-----------------CCC
Confidence 9988883 33333457899999999 999874322 237999997 677
Q ss_pred CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccc
Q 005093 252 PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 331 (715)
Q Consensus 252 ~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~ 331 (715)
..++++........|.|||||++|+|+.... ...+|+++|+.++..+.++...
T Consensus 313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~--------~~~~i~~~d~~~~~~~~l~~~~------------------- 365 (417)
T TIGR02800 313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREG--------GGFNIAVMDLDGGGERVLTDTG------------------- 365 (417)
T ss_pred CEEEeecCCCCccCeEECCCCCEEEEEEccC--------CceEEEEEeCCCCCeEEccCCC-------------------
Confidence 7778887666778899999999999998753 2457999999886554443211
Q ss_pred cCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 005093 332 SSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 377 (715)
Q Consensus 332 ~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 377 (715)
....+.|+|||+.|++.+..++...|+.++..++..+.++...+
T Consensus 366 --~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g 409 (417)
T TIGR02800 366 --LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNG 409 (417)
T ss_pred --CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCC
Confidence 12345799999999999988887788888876666666765443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=194.81 Aligned_cols=317 Identities=15% Similarity=0.139 Sum_probs=203.9
Q ss_pred ccccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecC
Q 005093 8 NLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP 86 (715)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 86 (715)
..-.......+|++|+++... ++|+.. ......+.|||||++|||+.+. .+|... .+++.+++|...
T Consensus 15 ~~~r~s~~~~y~i~d~~~~~~--~~l~~~-----~~~~~~~~~sP~g~~~~~v~~~-----nly~~~~~~~~~~~lT~dg 82 (353)
T PF00930_consen 15 KQWRHSFKGDYYIYDIETGEI--TPLTPP-----PPKLQDAKWSPDGKYIAFVRDN-----NLYLRDLATGQETQLTTDG 82 (353)
T ss_dssp EESSSEEEEEEEEEETTTTEE--EESS-E-----ETTBSEEEE-SSSTEEEEEETT-----EEEEESSTTSEEEESES--
T ss_pred EeeeeccceeEEEEecCCCce--EECcCC-----ccccccceeecCCCeeEEEecC-----ceEEEECCCCCeEEecccc
Confidence 334455778899988877543 444333 2568999999999999999876 488877 567777777642
Q ss_pred -----ccccccccCCC---cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCC
Q 005093 87 -----QTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAG 158 (715)
Q Consensus 87 -----~~~~~~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 158 (715)
.+..++||.++ ....+.|||||++|||...+...-.......+.......+. ...+.| |.-|+..
T Consensus 83 ~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~----~~~~~Y-Pk~G~~n-- 155 (353)
T PF00930_consen 83 EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPE----VESIRY-PKAGDPN-- 155 (353)
T ss_dssp TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-E----EEEEE---BTTS----
T ss_pred ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCc----cccccc-CCCCCcC--
Confidence 23344556554 34588999999999999866543222111111111110000 001112 2223321
Q ss_pred ccCceEEEEEccCCceEeecC----CCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccc
Q 005093 159 KRQPSLFVININSGEVQAVKG----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 234 (715)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~l~~----~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 234 (715)
....|+++++++++...+.. ...+.....+.|++|++. +++...... .....|+.+|+
T Consensus 156 -p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~----l~~~~~nR~----------q~~~~l~~~d~--- 217 (353)
T PF00930_consen 156 -PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR----LWVQWLNRD----------QNRLDLVLCDA--- 217 (353)
T ss_dssp --EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE----EEEEEEETT----------STEEEEEEEEE---
T ss_pred -CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE----EEEEEcccC----------CCEEEEEEEEC---
Confidence 33679999999998766531 123446778999999997 666532111 12235778886
Q ss_pred cchhhhhhhhccCCCCCCceecCCC--Ccc---ccceeEc-CCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCc
Q 005093 235 KSEASELELKESSSEDLPVVNLTES--ISS---AFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 308 (715)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~lt~~--~~~---~~~~~~s-pdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~l 308 (715)
.++..+.+..+ .+. ...+.|. ++|..++|.+.++ +..+||+++..++..++|
T Consensus 218 --------------~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~--------G~~hly~~~~~~~~~~~l 275 (353)
T PF00930_consen 218 --------------STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD--------GYRHLYLYDLDGGKPRQL 275 (353)
T ss_dssp --------------CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT--------SSEEEEEEETTSSEEEES
T ss_pred --------------CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC--------CCcEEEEEcccccceecc
Confidence 55555444322 222 3345555 9999999999964 367999999999888899
Q ss_pred ccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee--CCeeEEEEEECC-CCcEEEecCCCCCceeEEEe
Q 005093 309 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVS-SGELLRITPAESNFSWSLLT 385 (715)
Q Consensus 309 t~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~--~~~~~l~~~d~~-tg~~~~l~~~~~~~~~~~~s 385 (715)
|.+..++..+ +.|.++++.|||++.. ....+||+++++ +++.++|+...+.+....||
T Consensus 276 T~G~~~V~~i-------------------~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 276 TSGDWEVTSI-------------------LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS 336 (353)
T ss_dssp S-SSS-EEEE-------------------EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred ccCceeeccc-------------------ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence 9887665432 3578888999999885 357899999999 99999999988766457999
Q ss_pred ecCCEEEEEEeCCCCCC
Q 005093 386 LDGDNIIAVSSSPVDVP 402 (715)
Q Consensus 386 ~~~~~l~~~~~~~~~p~ 402 (715)
++++.++..+++++.|+
T Consensus 337 pdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 337 PDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp TTSSEEEEEEESSSSCE
T ss_pred CCCCEEEEEEcCCCCCC
Confidence 99999999999999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-20 Score=184.19 Aligned_cols=233 Identities=15% Similarity=0.139 Sum_probs=149.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc---hHHHHHHHhCCcEEEEEcCCCCC--C----------Cc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY---SKSLAFLSSVGYSLLIVNYRGSL--G----------FG 525 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~---~~~~~~la~~G~~vi~~d~rG~~--~----------~g 525 (715)
-+..+...+|+|+. ...+++|+|+++||++... ..| ......++..|+.|++||..+.+ . .+
T Consensus 28 l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~--~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~ 104 (283)
T PLN02442 28 LGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTD--ENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVG 104 (283)
T ss_pred cCCceEEEEEcCCc-ccCCCCCEEEEecCCCcCh--HHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCC
Confidence 45678888999983 3457899999999966543 222 22345667889999999975422 0 01
Q ss_pred hhhh-hcCCCCCC-----ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh
Q 005093 526 EEAL-QSLPGKVG-----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599 (715)
Q Consensus 526 ~~~~-~~~~~~~~-----~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 599 (715)
.++. +.....+. ....+++...++.... .+|.++++|+|+||||++++.++.++|++|+++++.+|++++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~ 182 (283)
T PLN02442 105 AGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANPIN 182 (283)
T ss_pred cceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCccc
Confidence 1110 00001111 1112333333333222 26889999999999999999999999999999999999876331
Q ss_pred hccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCch-HHHHHHHHHHHcC
Q 005093 600 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKG 678 (715)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~-~~~~~~~~l~~~g 678 (715)
.. +. ......+.+.+ ....+.+...+++..+...++|+|++||++|..++.. ++..+++++++.|
T Consensus 183 ~~-------~~------~~~~~~~~g~~-~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g 248 (283)
T PLN02442 183 CP-------WG------QKAFTNYLGSD-KADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKEAG 248 (283)
T ss_pred Cc-------hh------hHHHHHHcCCC-hhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHHcC
Confidence 10 10 00001111112 2233444445555666667899999999999999863 5788999999999
Q ss_pred CcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 679 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 679 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
.+++++++++.+|.+. ....++++.+.|..+++|
T Consensus 249 ~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 249 APVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred CCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 9999999999999875 222344455555555543
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-20 Score=181.00 Aligned_cols=204 Identities=24% Similarity=0.325 Sum_probs=142.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCC--Cchh-----hhhcCCCCCC
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG--FGEE-----ALQSLPGKVG 537 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~--~g~~-----~~~~~~~~~~ 537 (715)
+.+++..|++ .++.|.||++|+..+. .......++.|+++||.|++||+-+... .... ..........
T Consensus 1 ~~ay~~~P~~---~~~~~~Vvv~~d~~G~--~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (218)
T PF01738_consen 1 IDAYVARPEG---GGPRPAVVVIHDIFGL--NPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRP 75 (218)
T ss_dssp EEEEEEEETT---SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSH
T ss_pred CeEEEEeCCC---CCCCCEEEEEcCCCCC--chHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhH
Confidence 4688999983 3789999999995433 2455567889999999999999764333 1110 0000000011
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCC
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 617 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (715)
.....|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++|+..|...
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------------- 133 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------------
Confidence 12356788999999999878899999999999999999998876 68999998877100
Q ss_pred CCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCC
Q 005093 618 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 697 (715)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 697 (715)
+ ..+.....++++|+|+++|++|+.++.+....+.+.+++++.++++++|+|++|+|..+.
T Consensus 134 ---------~----------~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 ---------P----------PPPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp ---------G----------GGHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred ---------C----------CcchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 0 001223456789999999999999999999999999999999999999999999998643
Q ss_pred -------chHHHHHHHHHHHHHhc
Q 005093 698 -------SDFESFLNIGLWFKKYC 714 (715)
Q Consensus 698 -------~~~~~~~~i~~wl~~~l 714 (715)
...+.++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 24578889999999987
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-20 Score=192.41 Aligned_cols=235 Identities=14% Similarity=0.149 Sum_probs=149.8
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
...+|.++.|+++.|+ ..++.|+||++||.... ....|....+.|+++||.|+++|+||. |.+... + .
T Consensus 174 ~~~~g~~l~g~l~~P~---~~~~~P~Vli~gG~~~~-~~~~~~~~~~~La~~Gy~vl~~D~pG~---G~s~~~--~--~- 241 (414)
T PRK05077 174 PIPGGGPITGFLHLPK---GDGPFPTVLVCGGLDSL-QTDYYRLFRDYLAPRGIAMLTIDMPSV---GFSSKW--K--L- 241 (414)
T ss_pred EcCCCcEEEEEEEECC---CCCCccEEEEeCCcccc-hhhhHHHHHHHHHhCCCEEEEECCCCC---CCCCCC--C--c-
Confidence 3446778999999997 34678988876663322 123456677889999999999999994 433211 0 0
Q ss_pred ccch-hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh-hhcc-CCCCCCceeeec
Q 005093 538 SQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVG-TTDIPDWCYVES 614 (715)
Q Consensus 538 ~~~~-~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~-~~~~-~~~~~~~~~~~~ 614 (715)
..+. ....++++++.+.+.+|.++|+++|||+||++++.++..+|++++++|+.+|+++.. .... ....+.. +...
T Consensus 242 ~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~-~~~~ 320 (414)
T PRK05077 242 TQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEM-YLDV 320 (414)
T ss_pred cccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhchHH-HHHH
Confidence 1112 223577889988888899999999999999999999998899999999999876421 0000 0000000 0000
Q ss_pred cCCCCCCCCCCCCChhhHHHHHhcCch--hh-ccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 005093 615 YGSKGKDSFTESPSVEDLTRFHSKSPI--SH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 691 (715)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~-~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 691 (715)
+... . .+...........+...+.. .. ..++++|+|+++|++|+++|++++..+.+.. .+.+++++|++ |
T Consensus 321 la~~-l-g~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~----~~~~l~~i~~~-~ 393 (414)
T PRK05077 321 LASR-L-GMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSS----ADGKLLEIPFK-P 393 (414)
T ss_pred HHHH-h-CCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhC----CCCeEEEccCC-C
Confidence 0000 0 00000000111111112211 11 2568899999999999999999888665443 34778899986 3
Q ss_pred cCCCCCchHHHHHHHHHHHHHhcC
Q 005093 692 GIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
.+ +...+++..+.+||+++|.
T Consensus 394 ~~---e~~~~~~~~i~~wL~~~l~ 414 (414)
T PRK05077 394 VY---RNFDKALQEISDWLEDRLC 414 (414)
T ss_pred cc---CCHHHHHHHHHHHHHHHhC
Confidence 23 3456889999999999873
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-19 Score=183.34 Aligned_cols=245 Identities=20% Similarity=0.225 Sum_probs=153.8
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
.+...+|..++...+.|. .+.++||++||.... ...|...+..|+++||.|+++|+|| +|.+........
T Consensus 34 ~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~~--~~~y~~~~~~l~~~g~~v~~~D~~G---~G~S~~~~~~~~ 103 (330)
T PRK10749 34 EFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIES--YVKYAELAYDLFHLGYDVLIIDHRG---QGRSGRLLDDPH 103 (330)
T ss_pred EEEcCCCCEEEEEEccCC-----CCCcEEEEECCccch--HHHHHHHHHHHHHCCCeEEEEcCCC---CCCCCCCCCCCC
Confidence 445668888888777653 235789999995432 3456677778899999999999999 554421100000
Q ss_pred CC-----ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc--------
Q 005093 536 VG-----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------- 602 (715)
Q Consensus 536 ~~-----~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-------- 602 (715)
.+ ..-++|+.++++.+... .+..++.++||||||.+++.++.++|++++++|+.+|.........
T Consensus 104 ~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~ 181 (330)
T PRK10749 104 RGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRIL 181 (330)
T ss_pred cCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHHH
Confidence 01 11144555555554433 2457899999999999999999999999999999998653210000
Q ss_pred -----CCCCCC-cee-eeccCC-CCCCCCCCCCChhh---HHHHHhcC----------------------chhhccCCCC
Q 005093 603 -----TTDIPD-WCY-VESYGS-KGKDSFTESPSVED---LTRFHSKS----------------------PISHISKVKT 649 (715)
Q Consensus 603 -----~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~---~~~~~~~s----------------------p~~~~~~i~~ 649 (715)
...... ... ...+.. ........ ..... .......+ ....+.++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 260 (330)
T PRK10749 182 NWAEGHPRIRDGYAIGTGRWRPLPFAINVLT-HSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAGDITT 260 (330)
T ss_pred HHHHHhcCCCCcCCCCCCCCCCCCcCCCCCC-CCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhccCCCC
Confidence 000000 000 000000 00000000 00000 00000011 1234567889
Q ss_pred cEEEEeeCCCCcCCchHHHHHHHHHHHcCC---cEEEEEeCCCCccCCCCCc--hHHHHHHHHHHHHHh
Q 005093 650 PTIFLLGAQDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKY 713 (715)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~---~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~wl~~~ 713 (715)
|+|+++|++|.+++++.+..+++.+++++. .++++++++++|....+.. +..+++.|++||+++
T Consensus 261 P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 261 PLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred CEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999887653 4589999999999876554 667899999999875
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=187.31 Aligned_cols=240 Identities=17% Similarity=0.180 Sum_probs=179.0
Q ss_pred ccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccc
Q 005093 12 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVH 90 (715)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 90 (715)
......+|+.|-+ +.+...++... ..+..|.|||||+.|+|+.-..+.++++|.+. ..++..++.......
T Consensus 169 ~~~~~~l~~~D~d--g~~~~~l~~~~-----~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~- 240 (425)
T COG0823 169 GPLPYELALGDYD--GYNQQKLTDSG-----SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN- 240 (425)
T ss_pred CCCCceEEEEccC--CcceeEecccC-----cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc-
Confidence 3456678886655 33445554444 45688999999999999976654447888888 777777776644433
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
..++|||||++|+|...+. +..+||++|+.
T Consensus 241 ---------~~P~fspDG~~l~f~~~rd-----------------------------------------g~~~iy~~dl~ 270 (425)
T COG0823 241 ---------GAPAFSPDGSKLAFSSSRD-----------------------------------------GSPDIYLMDLD 270 (425)
T ss_pred ---------CCccCCCCCCEEEEEECCC-----------------------------------------CCccEEEEcCC
Confidence 6899999999999987654 34889999999
Q ss_pred CCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC
Q 005093 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 250 (715)
Q Consensus 171 ~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (715)
++..++|+ ........+.|||||+. |+|++.+.+ ..+||++++ ++
T Consensus 271 ~~~~~~Lt--~~~gi~~~Ps~spdG~~----ivf~Sdr~G------------~p~I~~~~~-----------------~g 315 (425)
T COG0823 271 GKNLPRLT--NGFGINTSPSWSPDGSK----IVFTSDRGG------------RPQIYLYDL-----------------EG 315 (425)
T ss_pred CCcceecc--cCCccccCccCCCCCCE----EEEEeCCCC------------CcceEEECC-----------------CC
Confidence 99988884 44444458999999999 999985433 248999997 88
Q ss_pred CCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCC-CCCcccceeeeeeceecCCCCCccc
Q 005093 251 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG-NFSSLEKIVDVIPVVQCAEGDCFPG 329 (715)
Q Consensus 251 ~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~~~~~~~~~g 329 (715)
+..+++|...+....|.|||||++|+|.+... | ..++...++.++. .+.++...
T Consensus 316 ~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~----g----~~~i~~~~~~~~~~~~~lt~~~----------------- 370 (425)
T COG0823 316 SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG----G----QWDIDKNDLASGGKIRILTSTY----------------- 370 (425)
T ss_pred CceeEeeccCCCCcCccCCCCCCEEEEEeccC----C----ceeeEEeccCCCCcEEEccccc-----------------
Confidence 88899998888777999999999999999542 2 2678888887766 33343322
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 330 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 330 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
....+.|.+||+.+.+.+...+...|+.+...+.....+.
T Consensus 371 ----~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 371 ----LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred ----cCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 2346689999999999888777888998887444333333
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-19 Score=178.96 Aligned_cols=233 Identities=12% Similarity=0.075 Sum_probs=150.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHH-HhCCcEEEEEcC--CCCCCCch--hhh------
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNY--RGSLGFGE--EAL------ 529 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~l-a~~G~~vi~~d~--rG~~~~g~--~~~------ 529 (715)
.+.++...+|.|+++. .++.|+|+++||.+.......+...+..+ ++.||.|++||. ||.+..+. .|.
T Consensus 23 ~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~ 101 (275)
T TIGR02821 23 CGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAG 101 (275)
T ss_pred cCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCcc
Confidence 4677888999998653 35689999999976543222222223334 567999999997 55332111 110
Q ss_pred ---hcCCCCCC--ccchhhHHHHHHHHHHc-CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC
Q 005093 530 ---QSLPGKVG--SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 603 (715)
Q Consensus 530 ---~~~~~~~~--~~~~~d~~~~i~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~ 603 (715)
+.....+. ......+.+.+..+++. ..++.++++|+|+||||++++.++.++|++++++++++|+.+....
T Consensus 102 ~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~--- 178 (275)
T TIGR02821 102 FYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAPSRC--- 178 (275)
T ss_pred ccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCcccC---
Confidence 00000000 01122334444444443 4478899999999999999999999999999999999998764211
Q ss_pred CCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhcc--CCCCcEEEEeeCCCCcCCc-hHHHHHHHHHHHcCCc
Q 005093 604 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS--KVKTPTIFLLGAQDLRVPV-SNGLQYARALREKGVE 680 (715)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~--~i~~P~Lii~G~~D~~v~~-~~~~~~~~~l~~~g~~ 680 (715)
.+. ......+.+... +.+...+|...+. ...+|+++.||+.|+.++. .++..+.++++++|++
T Consensus 179 ----~~~------~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~ 244 (275)
T TIGR02821 179 ----PWG------QKAFSAYLGADE----AAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQA 244 (275)
T ss_pred ----cch------HHHHHHHhcccc----cchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHcCCC
Confidence 010 000001111111 1122334443333 2457999999999999998 6888999999999999
Q ss_pred EEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 681 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 681 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+++.++|+++|+|.... ..+...++|+.+++
T Consensus 245 v~~~~~~g~~H~f~~~~---~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 245 LTLRRQAGYDHSYYFIA---SFIADHLRHHAERL 275 (275)
T ss_pred eEEEEeCCCCccchhHH---HhHHHHHHHHHhhC
Confidence 99999999999987543 56778888887764
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=185.07 Aligned_cols=233 Identities=17% Similarity=0.161 Sum_probs=163.5
Q ss_pred CceEEEEecCCCC--CCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCC
Q 005093 54 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 130 (715)
Q Consensus 54 g~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 130 (715)
+++|||+....++ ...++..+ ++...+.++...... ..++|||||++|+|.+...
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v----------~~p~wSPDG~~la~~s~~~------------ 225 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPL----------MSPAWSPDGSKLAYVSFEN------------ 225 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCcc----------ccceEcCCCCEEEEEEecC------------
Confidence 6899999865422 24565555 454555555433333 7899999999999986532
Q ss_pred CCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCc
Q 005093 131 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 210 (715)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~ 210 (715)
...+||++|+++|+.+.++ ........++|||||+. |+|....+
T Consensus 226 -----------------------------~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPDG~~----La~~~~~~- 269 (429)
T PRK01742 226 -----------------------------KKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPDGSR----LAFASSKD- 269 (429)
T ss_pred -----------------------------CCcEEEEEeCCCCceEEEe--cCCCccCceeECCCCCE----EEEEEecC-
Confidence 2378999999999887773 32233457899999999 99976322
Q ss_pred cceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCcc
Q 005093 211 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 290 (715)
Q Consensus 211 ~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~ 290 (715)
...+||.+|+ .++..++++........|.|||||++|+|.+.+.
T Consensus 270 -----------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~-------- 313 (429)
T PRK01742 270 -----------GVLNIYVMGA-----------------NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS-------- 313 (429)
T ss_pred -----------CcEEEEEEEC-----------------CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCC--------
Confidence 2237999997 7788889998777788999999999999998764
Q ss_pred ccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 005093 291 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 370 (715)
Q Consensus 291 ~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 370 (715)
+..+||.++..++..+.++.. . ..+.|+|||+.|++... ..++.+|+.+|+.+
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~----------------------~-~~~~~SpDG~~ia~~~~----~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGR----------------------G-YSAQISADGKTLVMING----DNVVKQDLTSGSTE 366 (429)
T ss_pred CCceEEEEECCCCCeEEecCC----------------------C-CCccCCCCCCEEEEEcC----CCEEEEECCCCCeE
Confidence 235799998776544322100 1 24579999998888654 35888999999988
Q ss_pred EecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 005093 371 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 409 (715)
Q Consensus 371 ~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~ 409 (715)
.++.... .....|+++|+.|++.... ..-..+++.+.
T Consensus 367 ~lt~~~~-~~~~~~sPdG~~i~~~s~~-g~~~~l~~~~~ 403 (429)
T PRK01742 367 VLSSTFL-DESPSISPNGIMIIYSSTQ-GLGKVLQLVSA 403 (429)
T ss_pred EecCCCC-CCCceECCCCCEEEEEEcC-CCceEEEEEEC
Confidence 8765432 2346799999988887653 23333444443
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=176.87 Aligned_cols=221 Identities=15% Similarity=0.163 Sum_probs=154.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCCccch
Q 005093 464 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541 (715)
Q Consensus 464 ~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~-~~~~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~ 541 (715)
.+...+|.|.. ...|+||++|||++.... ..+...+..|+. .|+.|+++|||.++++ .....+
T Consensus 68 ~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~-----------~~p~~~ 132 (318)
T PRK10162 68 QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA-----------RFPQAI 132 (318)
T ss_pred ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC-----------CCCCcH
Confidence 58889999952 246999999999876543 345667777776 6999999999986653 122348
Q ss_pred hhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhC------CCceeEEEecCCcchhhhhccCCCCCCceee
Q 005093 542 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPDWCYV 612 (715)
Q Consensus 542 ~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 612 (715)
+|+.++++|+.++ ..+|+++|+|+|+|+||.+++.++.+. +.+++++++++|+.+..... .+.
T Consensus 133 ~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~~~~------s~~-- 204 (318)
T PRK10162 133 EEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSV------SRR-- 204 (318)
T ss_pred HHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCCCCh------hHH--
Confidence 8999999998764 347889999999999999999888643 35789999999987642110 000
Q ss_pred eccCCCCCCCCCCCCChhhHHHHH---------hcCchh-----hccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcC
Q 005093 613 ESYGSKGKDSFTESPSVEDLTRFH---------SKSPIS-----HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 678 (715)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~sp~~-----~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g 678 (715)
.+... +.. ......+.+. ..+|.. .+...-+|++|++|+.|..+ +++..++++|+++|
T Consensus 205 -~~~~~----~~~-l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~L~~aG 276 (318)
T PRK10162 205 -LLGGV----WDG-LTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQTLAAHQ 276 (318)
T ss_pred -HhCCC----ccc-cCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHHHHHcC
Confidence 00000 000 0001111110 112221 12123379999999999987 68999999999999
Q ss_pred CcEEEEEeCCCCccCCCC----CchHHHHHHHHHHHHHhcC
Q 005093 679 VETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 679 ~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~~l~ 715 (715)
++++++++++..|+|... ....+.++.+.+||+++++
T Consensus 277 v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 277 QPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred CCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998643 2244678899999999875
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-18 Score=183.07 Aligned_cols=244 Identities=15% Similarity=0.145 Sum_probs=178.4
Q ss_pred CCCCceEEEEecCC-CCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 005093 51 SPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 128 (715)
Q Consensus 51 Spdg~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 128 (715)
.+.+.+++|++..+ ++...++.++ +++..++++...... ..+.|||||++|+|.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~~Spdg~~la~~~~~~---------- 211 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPI----------LSPAWSPDGQKLAYVSFES---------- 211 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCce----------ecccCCCCCCEEEEEEcCC----------
Confidence 45678999998764 3556688777 556677776543323 5889999999999975432
Q ss_pred CCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeec
Q 005093 129 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 208 (715)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~ 208 (715)
+..+|+++|+++|+.+.+. ........+.|||||+. |+|+...
T Consensus 212 -------------------------------~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spDg~~----l~~~~~~ 254 (417)
T TIGR02800 212 -------------------------------GKPEIYVQDLATGQREKVA--SFPGMNGAPAFSPDGSK----LAVSLSK 254 (417)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEee--cCCCCccceEECCCCCE----EEEEECC
Confidence 2367999999999887773 33333456899999999 9987632
Q ss_pred CccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCC
Q 005093 209 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 288 (715)
Q Consensus 209 ~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~ 288 (715)
. ...+||.+++ .++..++++........|.|+|||++|+|.+.+.
T Consensus 255 ~------------~~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~------ 299 (417)
T TIGR02800 255 D------------GNPDIYVMDL-----------------DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG------ 299 (417)
T ss_pred C------------CCccEEEEEC-----------------CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC------
Confidence 2 2347999997 7778888887666667899999999999998764
Q ss_pred ccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 005093 289 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 368 (715)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~ 368 (715)
...+||++++.+++.+.++... .....+.|+|||+.|+++....+..+|+.+|+.++.
T Consensus 300 --g~~~iy~~d~~~~~~~~l~~~~--------------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 300 --GSPQIYMMDADGGEVRRLTFRG--------------------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred --CCceEEEEECCCCCEEEeecCC--------------------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 2347999998876654443211 023466899999999998877777899999999988
Q ss_pred EEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 369 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 369 ~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
.+.++.... .....|+++++.|++.+..... ..+++.+.+
T Consensus 358 ~~~l~~~~~-~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~~ 397 (417)
T TIGR02800 358 ERVLTDTGL-DESPSFAPNGRMILYATTRGGR-GVLGLVSTD 397 (417)
T ss_pred eEEccCCCC-CCCceECCCCCEEEEEEeCCCc-EEEEEEECC
Confidence 887775433 2335899999999988876544 466666643
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=183.79 Aligned_cols=246 Identities=13% Similarity=0.111 Sum_probs=155.9
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
.+...++..+....+.|. ...+.|+||++||.+.. ...|...+..|+++||.|+++|+|| ||.+........
T Consensus 114 ~~~~~~~~~l~~~~~~p~---~~~~~~~Vl~lHG~~~~--~~~~~~~a~~L~~~Gy~V~~~D~rG---hG~S~~~~~~~~ 185 (395)
T PLN02652 114 LFYGARRNALFCRSWAPA---AGEMRGILIIIHGLNEH--SGRYLHFAKQLTSCGFGVYAMDWIG---HGGSDGLHGYVP 185 (395)
T ss_pred EEECCCCCEEEEEEecCC---CCCCceEEEEECCchHH--HHHHHHHHHHHHHCCCEEEEeCCCC---CCCCCCCCCCCc
Confidence 455667778888888885 34457899999996543 3456778889999999999999999 554432111001
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC---ceeEEEecCCcchhhhhcc---------C
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVG---------T 603 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~~~~~~~~~~~---------~ 603 (715)
......+|+.++++++.... +..+++|+||||||.+++.++. +|+ +++++|+.+|...+..... .
T Consensus 186 ~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~~~l~~ 262 (395)
T PLN02652 186 SLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAVAPIFS 262 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHHHHHHH
Confidence 11122567888888887652 3357999999999999987764 564 7999999999764321000 0
Q ss_pred CCCCCceeee--ccCCCC-------CCCC------CCCCChhhHHHHHhcC--chhhccCCCCcEEEEeeCCCCcCCchH
Q 005093 604 TDIPDWCYVE--SYGSKG-------KDSF------TESPSVEDLTRFHSKS--PISHISKVKTPTIFLLGAQDLRVPVSN 666 (715)
Q Consensus 604 ~~~~~~~~~~--~~~~~~-------~~~~------~~~~~~~~~~~~~~~s--p~~~~~~i~~P~Lii~G~~D~~v~~~~ 666 (715)
.-.+.+.+.. ..+... ...+ .+.............. ....+.++++|+|++||++|.++|++.
T Consensus 263 ~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D~vvp~~~ 342 (395)
T PLN02652 263 LVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTADRVTDPLA 342 (395)
T ss_pred HhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCCCCCHHH
Confidence 0000000000 000000 0000 0000000000000000 123457789999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 667 GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 667 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+..+++.+.. ...+++++++++|....+....++++.+.+||+.++
T Consensus 343 a~~l~~~~~~--~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~ 388 (395)
T PLN02652 343 SQDLYNEAAS--RHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRL 388 (395)
T ss_pred HHHHHHhcCC--CCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHh
Confidence 9988887643 345688899999998766667789999999999875
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=162.27 Aligned_cols=212 Identities=17% Similarity=0.182 Sum_probs=150.9
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCce
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 561 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~ 561 (715)
.+|+++||..++ ......+.++|.++||.|.+|.|+|.+-....+.+..+.+| ++|+.++.++|.+.++ +.
T Consensus 16 ~AVLllHGFTGt--~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~e 86 (243)
T COG1647 16 RAVLLLHGFTGT--PRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---DE 86 (243)
T ss_pred EEEEEEeccCCC--cHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---Ce
Confidence 789999994433 55777888999999999999999995544444443333333 7899999999998764 78
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcC--
Q 005093 562 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS-- 639 (715)
Q Consensus 562 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-- 639 (715)
|+++|.||||.+++.+|.+.| .+++|.+|+............. ...+.. ..+.+.+.......+.+....
T Consensus 87 I~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~-~l~y~~-----~~kk~e~k~~e~~~~e~~~~~~~ 158 (243)
T COG1647 87 IAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEG-LLEYFR-----NAKKYEGKDQEQIDKEMKSYKDT 158 (243)
T ss_pred EEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHH-HHHHHH-----HhhhccCCCHHHHHHHHHHhhcc
Confidence 999999999999999999888 7888888876653211100000 000000 011111111111112222222
Q ss_pred --------------chhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHH
Q 005093 640 --------------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLN 705 (715)
Q Consensus 640 --------------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~ 705 (715)
....++.|..|++++.|.+|+.+|.+.+..+++.+.. .+.++.+|++.||.+.....++++.+.
T Consensus 159 ~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Erd~v~e~ 236 (243)
T COG1647 159 PMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKERDQVEED 236 (243)
T ss_pred hHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhHHHHHHH
Confidence 2245678889999999999999999999999988865 467799999999999999999999999
Q ss_pred HHHHHHH
Q 005093 706 IGLWFKK 712 (715)
Q Consensus 706 i~~wl~~ 712 (715)
++.||+.
T Consensus 237 V~~FL~~ 243 (243)
T COG1647 237 VITFLEK 243 (243)
T ss_pred HHHHhhC
Confidence 9999963
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=172.87 Aligned_cols=244 Identities=15% Similarity=0.183 Sum_probs=155.1
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhh-hcCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-QSLPG 534 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~-~~~~~ 534 (715)
.+...+|..+....+.+. ..+..+||++||.... ...|...+..|+.+||.|+++|.|| +|.+.. ....-
T Consensus 13 ~~~~~d~~~~~~~~~~~~----~~~~g~Vvl~HG~~Eh--~~ry~~la~~l~~~G~~V~~~D~RG---hG~S~r~~rg~~ 83 (298)
T COG2267 13 YFTGADGTRLRYRTWAAP----EPPKGVVVLVHGLGEH--SGRYEELADDLAARGFDVYALDLRG---HGRSPRGQRGHV 83 (298)
T ss_pred eeecCCCceEEEEeecCC----CCCCcEEEEecCchHH--HHHHHHHHHHHHhCCCEEEEecCCC---CCCCCCCCcCCc
Confidence 455668888888888764 2233899999996544 4467778999999999999999999 555531 11111
Q ss_pred CCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh--hc-c--------C
Q 005093 535 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MV-G--------T 603 (715)
Q Consensus 535 ~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~--~~-~--------~ 603 (715)
.....-..|+...++.+... ....+++|+||||||.+++.++.+++..+.++|+.+|.+.... .. . .
T Consensus 84 ~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~~ 161 (298)
T COG2267 84 DSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKLL 161 (298)
T ss_pred hhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhcccc
Confidence 11111134444444444433 2357899999999999999999999999999999999887652 10 0 0
Q ss_pred C-CCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCch-----------------------hhccCCCCcEEEEeeCCC
Q 005093 604 T-DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI-----------------------SHISKVKTPTIFLLGAQD 659 (715)
Q Consensus 604 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-----------------------~~~~~i~~P~Lii~G~~D 659 (715)
. ..+.+...... ......-........ ......+|. .....+++|+||++|+.|
T Consensus 162 ~~~~p~~~~~~~~-~~~~~~~~~sr~~~~-~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll~g~~D 239 (298)
T COG2267 162 GRIRPKLPVDSNL-LEGVLTDDLSRDPAE-VAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGDD 239 (298)
T ss_pred cccccccccCccc-ccCcCcchhhcCHHH-HHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEEEEecCCC
Confidence 0 00000000000 000000000000111 111112221 124466799999999999
Q ss_pred CcCC-chHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCch--HHHHHHHHHHHHHhc
Q 005093 660 LRVP-VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYC 714 (715)
Q Consensus 660 ~~v~-~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~wl~~~l 714 (715)
.+++ .+...++++++... ..++++++|+.|....+... .++++.+.+|+.+++
T Consensus 240 ~vv~~~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 240 RVVDNVEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred ccccCcHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 9998 56666665555332 36899999999998887777 889999999999875
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-18 Score=163.69 Aligned_cols=207 Identities=20% Similarity=0.253 Sum_probs=159.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhh----hcCC----
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL----QSLP---- 533 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~----~~~~---- 533 (715)
+.++.+++..|+ ...+.|+||++|+..+. .......++.||.+||.|++||+-+..+-..... ....
T Consensus 11 ~~~~~~~~a~P~---~~~~~P~VIv~hei~Gl--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
T COG0412 11 DGELPAYLARPA---GAGGFPGVIVLHEIFGL--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVE 85 (236)
T ss_pred CceEeEEEecCC---cCCCCCEEEEEecccCC--chHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhc
Confidence 388999999998 44445999999995444 3467778999999999999999754222111110 0000
Q ss_pred CCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeee
Q 005093 534 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 613 (715)
Q Consensus 534 ~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 613 (715)
.........|+.+++++|.+++.++.++|+++|+||||.+++.++.+.| .++++++..|..-..
T Consensus 86 ~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~--------------- 149 (236)
T COG0412 86 RVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIAD--------------- 149 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCC---------------
Confidence 1111344789999999999998889999999999999999999998766 799999887743100
Q ss_pred ccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 614 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
. .....++++|+|+.+|+.|..+|......+.+++..+++.+++.+|+++.|+|
T Consensus 150 --------------~------------~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 150 --------------D------------TADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred --------------c------------ccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 0 01145788999999999999999999999999999988899999999999999
Q ss_pred CCCC----------chHHHHHHHHHHHHHhcC
Q 005093 694 ERPQ----------SDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 694 ~~~~----------~~~~~~~~i~~wl~~~l~ 715 (715)
..+. ...+.++++++||+++++
T Consensus 204 ~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 204 ANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 8542 235788999999999874
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-18 Score=175.05 Aligned_cols=206 Identities=18% Similarity=0.217 Sum_probs=160.8
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC
Q 005093 100 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 179 (715)
Q Consensus 100 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~ 179 (715)
..+.|||||++|+|+..... +...+|++++++++...+
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~----------------------------------------~~~~i~~~~l~~g~~~~i-- 233 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELG----------------------------------------GCPRIYYLDLNTGKRPVI-- 233 (425)
T ss_pred eccccCcCCCceEEEEEecC----------------------------------------CCceEEEEeccCCcccee--
Confidence 68999999999999854320 127899999999998877
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCC
Q 005093 180 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 259 (715)
Q Consensus 180 ~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 259 (715)
.........++|||||++ |+|+..++ ...+||++|+ .+++..+|+..
T Consensus 234 ~~~~g~~~~P~fspDG~~----l~f~~~rd------------g~~~iy~~dl-----------------~~~~~~~Lt~~ 280 (425)
T COG0823 234 LNFNGNNGAPAFSPDGSK----LAFSSSRD------------GSPDIYLMDL-----------------DGKNLPRLTNG 280 (425)
T ss_pred eccCCccCCccCCCCCCE----EEEEECCC------------CCccEEEEcC-----------------CCCcceecccC
Confidence 455667778999999999 99998544 3358999998 77788889999
Q ss_pred CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCc
Q 005093 260 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 339 (715)
Q Consensus 260 ~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 339 (715)
.+....|.|||||++|+|++.+. +..+||++++.++..+++|.... ....+.
T Consensus 281 ~gi~~~Ps~spdG~~ivf~Sdr~--------G~p~I~~~~~~g~~~~riT~~~~--------------------~~~~p~ 332 (425)
T COG0823 281 FGINTSPSWSPDGSKIVFTSDRG--------GRPQIYLYDLEGSQVTRLTFSGG--------------------GNSNPV 332 (425)
T ss_pred CccccCccCCCCCCEEEEEeCCC--------CCcceEEECCCCCceeEeeccCC--------------------CCcCcc
Confidence 99888999999999999999884 34589999999988877764431 122678
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCc-EEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 340 WLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 340 ~~~dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
|+|||+.|+|.+..++...+...|+.++. .+.++.... .....+++++..+++..... .-+.++..+++
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~-~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~ 402 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL-NESPSWAPNGRMIMFSSGQG-GGSVLSLVSLD 402 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc-CCCCCcCCCCceEEEeccCC-CCceEEEeecc
Confidence 99999999998866666778888888777 555555443 33467889999888887766 44556666644
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.1e-19 Score=176.11 Aligned_cols=242 Identities=18% Similarity=0.195 Sum_probs=150.5
Q ss_pred ccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC--
Q 005093 455 ANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-- 532 (715)
Q Consensus 455 ~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~-- 532 (715)
++|.+-+|.+|+|+++.|++ ..++.|+||.+||.+.. ...+.. ...++.+||+|+.+|.||.++.........
T Consensus 59 v~f~s~~g~~V~g~l~~P~~--~~~~~Pavv~~hGyg~~--~~~~~~-~~~~a~~G~~vl~~d~rGqg~~~~d~~~~~~~ 133 (320)
T PF05448_consen 59 VSFESFDGSRVYGWLYRPKN--AKGKLPAVVQFHGYGGR--SGDPFD-LLPWAAAGYAVLAMDVRGQGGRSPDYRGSSGG 133 (320)
T ss_dssp EEEEEGGGEEEEEEEEEES---SSSSEEEEEEE--TT----GGGHHH-HHHHHHTT-EEEEE--TTTSSSS-B-SSBSSS
T ss_pred EEEEccCCCEEEEEEEecCC--CCCCcCEEEEecCCCCC--CCCccc-ccccccCCeEEEEecCCCCCCCCCCccccCCC
Confidence 46677789999999999985 45789999999995543 222322 335789999999999999663222211000
Q ss_pred --CC----CCC--------ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc-hh
Q 005093 533 --PG----KVG--------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NL 597 (715)
Q Consensus 533 --~~----~~~--------~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~-~~ 597 (715)
.+ ... ...+.|+..++++|.+++.+|.++|++.|.|.||.+++.+|+..+ +++++++..|.. ++
T Consensus 134 ~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d~ 212 (320)
T PF05448_consen 134 TLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCDF 212 (320)
T ss_dssp -SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSSH
T ss_pred CCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCccch
Confidence 00 000 112579999999999999999999999999999999999999865 699888888854 44
Q ss_pred hhhccCCC-CCCceeeeccCCCCCCCCCCCC--ChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHH
Q 005093 598 ALMVGTTD-IPDWCYVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 674 (715)
Q Consensus 598 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (715)
........ ...+.-...+.. .....+ ..+..+.+...+....+.+|++|+|+..|-.|++||+......++.+
T Consensus 213 ~~~~~~~~~~~~y~~~~~~~~----~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i 288 (320)
T PF05448_consen 213 RRALELRADEGPYPEIRRYFR----WRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAI 288 (320)
T ss_dssp HHHHHHT--STTTHHHHHHHH----HHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC-
T ss_pred hhhhhcCCccccHHHHHHHHh----ccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhcc
Confidence 32221111 111100000000 000001 11223445667778889999999999999999999999998888888
Q ss_pred HHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 675 REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 675 ~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
.. +.++.+||..+|... .....++.++||.+|
T Consensus 289 ~~---~K~l~vyp~~~He~~----~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 289 PG---PKELVVYPEYGHEYG----PEFQEDKQLNFLKEH 320 (320)
T ss_dssp -S---SEEEEEETT--SSTT----HHHHHHHHHHHHHH-
T ss_pred CC---CeeEEeccCcCCCch----hhHHHHHHHHHHhcC
Confidence 53 589999999999664 222267899999875
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-17 Score=166.44 Aligned_cols=241 Identities=14% Similarity=0.172 Sum_probs=140.4
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
....++|..++.. |... .....|.||++||.+.. ...|...+..|+++||.|+++|+|| ||.+.. +..
T Consensus 25 ~~~~~~~~~~~i~-y~~~---G~~~~~~lvliHG~~~~--~~~w~~~~~~L~~~gy~vi~~Dl~G---~G~S~~---~~~ 92 (302)
T PRK00870 25 DVDDGDGGPLRMH-YVDE---GPADGPPVLLLHGEPSW--SYLYRKMIPILAAAGHRVIAPDLIG---FGRSDK---PTR 92 (302)
T ss_pred eecCCCCceEEEE-EEec---CCCCCCEEEEECCCCCc--hhhHHHHHHHHHhCCCEEEEECCCC---CCCCCC---CCC
Confidence 3344455555422 2222 22235789999996543 5578888888988899999999999 665521 111
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh------h---ccCC-C
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------M---VGTT-D 605 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~------~---~~~~-~ 605 (715)
......++..+.+..++++ .+.+++.|+|||+||.+++.++.++|++++++|++++...... . .... .
T Consensus 93 ~~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (302)
T PRK00870 93 REDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFSQY 170 (302)
T ss_pred cccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhccccc
Confidence 1122355555555555554 2457899999999999999999999999999999886421100 0 0000 0
Q ss_pred CCCc--------eeeeccCCCCCCCCCCCC-C--h-hhHHHHHh---cC-----------chhhccCCCCcEEEEeeCCC
Q 005093 606 IPDW--------CYVESYGSKGKDSFTESP-S--V-EDLTRFHS---KS-----------PISHISKVKTPTIFLLGAQD 659 (715)
Q Consensus 606 ~~~~--------~~~~~~~~~~~~~~~~~~-~--~-~~~~~~~~---~s-----------p~~~~~~i~~P~Lii~G~~D 659 (715)
.+.. .............+.... . . .....+.. .. -...+.++++|+|+++|++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D 250 (302)
T PRK00870 171 SPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSD 250 (302)
T ss_pred CchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCC
Confidence 0000 000000000000000000 0 0 00000000 00 01235678999999999999
Q ss_pred CcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 660 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
..+|... ..+.+.+... ....+++++++||....+. ...+.+.+.+|++++
T Consensus 251 ~~~~~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~~~e~-p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 251 PITGGGD-AILQKRIPGA-AGQPHPTIKGAGHFLQEDS-GEELAEAVLEFIRAT 301 (302)
T ss_pred CcccCch-HHHHhhcccc-cccceeeecCCCccchhhC-hHHHHHHHHHHHhcC
Confidence 9998755 6665555431 1134778999999876444 468899999999875
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=179.12 Aligned_cols=208 Identities=14% Similarity=0.193 Sum_probs=147.0
Q ss_pred HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC--CC------------CceEEEEEe
Q 005093 502 SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL--AN------------PSKVTVVGG 567 (715)
Q Consensus 502 ~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~--~d------------~~~i~l~G~ 567 (715)
..++|+.+||+|+..|.||.++++..+ ...+..+.+|..++|+||..+.. .| ..+|+++|.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~-----~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCP-----TTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcC-----ccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 457899999999999999987665443 22345568999999999985421 12 579999999
Q ss_pred ChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCC----CCce------eee-ccCCC-CCCCCCC-CC-------
Q 005093 568 SHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI----PDWC------YVE-SYGSK-GKDSFTE-SP------- 627 (715)
Q Consensus 568 S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~----~~~~------~~~-~~~~~-~~~~~~~-~~------- 627 (715)
||||++++.+|+..|+.++++|..+++.++..++..... ..|. ... .+... ....+.. .+
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 999999999999889999999999998876543311100 0000 000 00000 0000000 00
Q ss_pred ---------ChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCc
Q 005093 628 ---------SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 698 (715)
Q Consensus 628 ---------~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 698 (715)
.....+.|...++...++++++|+|++||..|..+++.++.++++++++++.+.++.+.++ +|.......
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~~ 504 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNWQ 504 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCchh
Confidence 0011233455677788899999999999999999999999999999999899988877765 686554445
Q ss_pred hHHHHHHHHHHHHHhcC
Q 005093 699 DFESFLNIGLWFKKYCK 715 (715)
Q Consensus 699 ~~~~~~~i~~wl~~~l~ 715 (715)
..++.+.+.+||+++|+
T Consensus 505 ~~d~~e~~~~Wfd~~Lk 521 (767)
T PRK05371 505 SIDFRDTMNAWFTHKLL 521 (767)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 56788999999999985
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=152.12 Aligned_cols=209 Identities=16% Similarity=0.233 Sum_probs=147.8
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHH-HhCCcEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~l-a~~G~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
++..|..+.+..+.|.. ...++++|.||.....+ ........| ...++.|+.+||+| +|.+.....
T Consensus 41 ~t~rgn~~~~~y~~~~~----~~~~~lly~hGNa~Dlg--q~~~~~~~l~~~ln~nv~~~DYSG---yG~S~G~ps---- 107 (258)
T KOG1552|consen 41 KTSRGNEIVCMYVRPPE----AAHPTLLYSHGNAADLG--QMVELFKELSIFLNCNVVSYDYSG---YGRSSGKPS---- 107 (258)
T ss_pred ecCCCCEEEEEEEcCcc----ccceEEEEcCCcccchH--HHHHHHHHHhhcccceEEEEeccc---ccccCCCcc----
Confidence 44567778888888752 35699999999633321 111122222 23589999999999 554432211
Q ss_pred CccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC-CCCCCceeeecc
Q 005093 537 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESY 615 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~ 615 (715)
.....+|+.++.+||.+... ..++|+|+|+|+|...++.+|++.| .+|+|+.+|+.+....... .....|
T Consensus 108 E~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~~~------ 178 (258)
T KOG1552|consen 108 ERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTTYC------ 178 (258)
T ss_pred cccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceEEe------
Confidence 12458999999999999976 7899999999999999999999988 9999999999886544322 111100
Q ss_pred CCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCC
Q 005093 616 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 695 (715)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 695 (715)
+..+.-+..+..+++|+|++||+.|+++++.++.+++++.+.+ ++-.+..|+||....
T Consensus 179 -------------------~d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~g~gH~~~~ 236 (258)
T KOG1552|consen 179 -------------------FDAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVKGAGHNDIE 236 (258)
T ss_pred -------------------eccccccCcceeccCCEEEEecccCceecccccHHHHHhcccc---CCCcEEecCCCcccc
Confidence 0001114567778899999999999999999999999998763 677788899996542
Q ss_pred CCchHHHHHHHHHHHHH
Q 005093 696 PQSDFESFLNIGLWFKK 712 (715)
Q Consensus 696 ~~~~~~~~~~i~~wl~~ 712 (715)
-. .++++.+..|+..
T Consensus 237 ~~--~~yi~~l~~f~~~ 251 (258)
T KOG1552|consen 237 LY--PEYIEHLRRFISS 251 (258)
T ss_pred cC--HHHHHHHHHHHHH
Confidence 22 2466666666653
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-17 Score=156.52 Aligned_cols=186 Identities=13% Similarity=0.141 Sum_probs=132.6
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCC----CCchhhhhcCCCCCCccc-------hhhHHH
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL----GFGEEALQSLPGKVGSQD-------VNDVLT 546 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~----~~g~~~~~~~~~~~~~~~-------~~d~~~ 546 (715)
....|+||++||.+.+ ...+...+..|+..++.+..+.++|.. +.|..|.... ....... ...+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHH
Confidence 4567899999996554 446777888888877655555555532 1123332111 0011111 223445
Q ss_pred HHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCC
Q 005093 547 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 626 (715)
Q Consensus 547 ~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (715)
.++++.++..++.++|+++|+|+||.+++.++.++|+.+.++++.++.... .
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~-----------------~----------- 141 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS-----------------L----------- 141 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc-----------------c-----------
Confidence 566666666688899999999999999999998889888888776653210 0
Q ss_pred CChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHH
Q 005093 627 PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 706 (715)
Q Consensus 627 ~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i 706 (715)
+. .....+|+|++||++|+++|++.+.++.+.|++.+.+++++++++++|.+. .+..+.+
T Consensus 142 ~~---------------~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~ 201 (232)
T PRK11460 142 PE---------------TAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFA 201 (232)
T ss_pred cc---------------cccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHH
Confidence 00 011358999999999999999999999999999999999999999999986 3567788
Q ss_pred HHHHHHhc
Q 005093 707 GLWFKKYC 714 (715)
Q Consensus 707 ~~wl~~~l 714 (715)
.+||.+.|
T Consensus 202 ~~~l~~~l 209 (232)
T PRK11460 202 LDRLRYTV 209 (232)
T ss_pred HHHHHHHc
Confidence 88888765
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-17 Score=156.07 Aligned_cols=194 Identities=18% Similarity=0.116 Sum_probs=124.2
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHHhCCcEEEEEcCCCCCCCchhh--hhcCCCCCCccchhh
Q 005093 467 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEA--LQSLPGKVGSQDVND 543 (715)
Q Consensus 467 ~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~-~~~~~~la~~G~~vi~~d~rG~~~~g~~~--~~~~~~~~~~~~~~d 543 (715)
+++|+|++. .+++|+||++||++........ ..+...+.+.||.|++||++|.++.+..+ ........+..+..+
T Consensus 1 ~~ly~P~~~--~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T TIGR01840 1 MYVYVPAGL--TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVES 78 (212)
T ss_pred CEEEcCCCC--CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHH
Confidence 368899863 4678999999997755321110 12344556789999999999865332211 111111122345778
Q ss_pred HHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCC
Q 005093 544 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSF 623 (715)
Q Consensus 544 ~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (715)
+.++++++.++..+|+++|+|+|+|+||.+++.++.++|+++++++++++....... .. ..... .+
T Consensus 79 ~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~----~~-----~~~~~-----~~ 144 (212)
T TIGR01840 79 LHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEAS----SS-----ISATP-----QM 144 (212)
T ss_pred HHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccc----cc-----hhhHh-----hc
Confidence 889999999887789999999999999999999999999999999888875321100 00 00000 00
Q ss_pred CCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHc
Q 005093 624 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 677 (715)
Q Consensus 624 ~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (715)
...........+.... ........+|++|+||++|.+||++.+..+++++++.
T Consensus 145 ~~~~~~~~~~~~~~~~-~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 145 CTAATAASVCRLVRGM-QSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred CCCCCHHHHHHHHhcc-CCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 0001111111111110 1112233456889999999999999999999999875
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-17 Score=168.04 Aligned_cols=233 Identities=21% Similarity=0.296 Sum_probs=157.7
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch--HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~--~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
+..+...+|.| ......+.|+||++|||++........ .....++..|+.|+.+|||..+++ ....
T Consensus 61 ~~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~-----------~~p~ 128 (312)
T COG0657 61 GDGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH-----------PFPA 128 (312)
T ss_pred CCceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------CCCc
Confidence 34466789999 223556799999999999887655443 344566789999999999987664 2334
Q ss_pred chhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhCCC----ceeEEEecCCcchhhhhccCCCCCCceee
Q 005093 540 DVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYV 612 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 612 (715)
.++|+.+++.|+.++. .+|+++|+++|+|.||.+++.++....+ ..++.++++|..+... . ......+...
T Consensus 129 ~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~-~~~~~~~~~~ 206 (312)
T COG0657 129 ALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-S-AASLPGYGEA 206 (312)
T ss_pred hHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-c-ccchhhcCCc
Confidence 5899999999999873 4899999999999999999998876443 5789999999988664 1 1111000000
Q ss_pred eccCCCC-----CCCCCCCCChhhHHHHHhcCchhh--ccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEE
Q 005093 613 ESYGSKG-----KDSFTESPSVEDLTRFHSKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 685 (715)
Q Consensus 613 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~sp~~~--~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (715)
..+.... ...+..... + ......+|+.. +.. -+|+++++|+.|.+.+ ++..+.++|+++|+++++..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~--~-~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~ 280 (312)
T COG0657 207 DLLDAAAILAWFADLYLGAAP--D-REDPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRV 280 (312)
T ss_pred cccCHHHHHHHHHHHhCcCcc--c-cCCCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEE
Confidence 0000000 000000000 0 00012333322 233 4789999999999986 88999999999999999999
Q ss_pred eCCCCccCCCCC--chHHHHHHHHHHHHHhc
Q 005093 686 FPNDVHGIERPQ--SDFESFLNIGLWFKKYC 714 (715)
Q Consensus 686 ~~~~~H~~~~~~--~~~~~~~~i~~wl~~~l 714 (715)
+++..|.|.... .....+.++.+|++..+
T Consensus 281 ~~g~~H~f~~~~~~~a~~~~~~~~~~l~~~~ 311 (312)
T COG0657 281 YPGMIHGFDLLTGPEARSALRQIAAFLRAAL 311 (312)
T ss_pred eCCcceeccccCcHHHHHHHHHHHHHHHHhc
Confidence 999999884322 23455677888887544
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-17 Score=162.22 Aligned_cols=226 Identities=19% Similarity=0.266 Sum_probs=158.5
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---ccchHHHHHH-HhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 463 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 463 ~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~---~~~~~~~~~l-a~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
..+..++|+|.......+.|+|||+|||++...+ ..|......+ ++.+..|+.+|||-.+++ ...
T Consensus 72 ~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh-----------~~P 140 (336)
T KOG1515|consen 72 TNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEH-----------PFP 140 (336)
T ss_pred CCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCC-----------CCC
Confidence 4467789999876555789999999999987653 4555556555 688999999999987664 344
Q ss_pred cchhhHHHHHHHHHHc----CCCCCceEEEEEeChhHHHHHHHHhhC------CCceeEEEecCCcchhhhhccCCCCCC
Q 005093 539 QDVNDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPD 608 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~----~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~~~v~~~~~~~~~~~~~~~~~~~ 608 (715)
..++|..+++.|+.++ ..+|.+||+|+|.|.||.+|..++.+. +..+++.|++.|++.............
T Consensus 141 a~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~e~~~~ 220 (336)
T KOG1515|consen 141 AAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTESEKQQN 220 (336)
T ss_pred ccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCHHHHHh
Confidence 4589999999999885 458999999999999999999887653 357899999999886543322110000
Q ss_pred ceeeeccCCCCCCCCCCCCChhhHHHHH--------------hcCchh-----hc-cCCCCcEEEEeeCCCCcCCchHHH
Q 005093 609 WCYVESYGSKGKDSFTESPSVEDLTRFH--------------SKSPIS-----HI-SKVKTPTIFLLGAQDLRVPVSNGL 668 (715)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~sp~~-----~~-~~i~~P~Lii~G~~D~~v~~~~~~ 668 (715)
...... ......+.++ ..+|.. .. ...-+|+|++.++.|... +++.
T Consensus 221 ~~~~~~------------~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~ 286 (336)
T KOG1515|consen 221 LNGSPE------------LARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGL 286 (336)
T ss_pred hcCCcc------------hhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhh--hhhH
Confidence 000000 0000001110 112221 11 122356999999999877 8899
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCccCCC--C--CchHHHHHHHHHHHHHh
Q 005093 669 QYARALREKGVETKVIVFPNDVHGIER--P--QSDFESFLNIGLWFKKY 713 (715)
Q Consensus 669 ~~~~~l~~~g~~~~~~~~~~~~H~~~~--~--~~~~~~~~~i~~wl~~~ 713 (715)
.+.++|++.|++++++.++++.|++.. + ....+..+.+.+|+++.
T Consensus 287 ~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 287 AYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 999999999999999999999998653 2 24566778888888764
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-17 Score=165.32 Aligned_cols=218 Identities=17% Similarity=0.238 Sum_probs=126.9
Q ss_pred CCcEEEEEcCCCCCCC-CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 480 CDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~-~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
..|.||++||.+.... +..+...+..+++.||.|+++|+|| +|.+..............+|+.++++. .+
T Consensus 29 ~~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~~~~l~~~l~~------l~ 99 (282)
T TIGR03343 29 NGEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPG---FNKSDAVVMDEQRGLVNARAVKGLMDA------LD 99 (282)
T ss_pred CCCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCC---CCCCCCCcCcccccchhHHHHHHHHHH------cC
Confidence 3467999999654421 1122234556778899999999999 555532110001111123444444333 25
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCC------------CCCce----eeec--cCCCCC
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWC----YVES--YGSKGK 620 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~----~~~~--~~~~~~ 620 (715)
.++++++||||||.+++.++.++|++++++|+++|............ ..... +... +.....
T Consensus 100 ~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (282)
T TIGR03343 100 IEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLI 179 (282)
T ss_pred CCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccC
Confidence 67999999999999999999999999999999887421100000000 00000 0000 000000
Q ss_pred C-----CCC--CCCChhhHHHHH---------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEE
Q 005093 621 D-----SFT--ESPSVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 684 (715)
Q Consensus 621 ~-----~~~--~~~~~~~~~~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (715)
. ... ..........+. ..+....+.++++|+|+++|++|..++++.+.++++.+. +++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~ 255 (282)
T TIGR03343 180 TEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLH 255 (282)
T ss_pred cHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEE
Confidence 0 000 000000000110 011123466889999999999999999888877776664 48889
Q ss_pred EeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 685 VFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 685 ~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
+++++||....+. ...+.+.|.+|++
T Consensus 256 ~i~~agH~~~~e~-p~~~~~~i~~fl~ 281 (282)
T TIGR03343 256 VFSRCGHWAQWEH-ADAFNRLVIDFLR 281 (282)
T ss_pred EeCCCCcCCcccC-HHHHHHHHHHHhh
Confidence 9999999876444 4578888999985
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-16 Score=161.43 Aligned_cols=243 Identities=15% Similarity=0.170 Sum_probs=144.1
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc--------------------c---c-hHHHHHHHhCCcEE
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--------------------S---Y-SKSLAFLSSVGYSL 513 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~--------------------~---~-~~~~~~la~~G~~v 513 (715)
.+.+|..|..+.+.|+ .+..+|+++||-+...... . | ..+++.|+++||.|
T Consensus 3 ~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V 77 (332)
T TIGR01607 3 RNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSV 77 (332)
T ss_pred cCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcE
Confidence 4558888988888874 3567999999943322111 1 1 35688999999999
Q ss_pred EEEcCCCCCCCchhhhhcC-CCCCC--ccchhhHHHHHHHHHHc------------------CCCCCceEEEEEeChhHH
Q 005093 514 LIVNYRGSLGFGEEALQSL-PGKVG--SQDVNDVLTAIDHVIDM------------------GLANPSKVTVVGGSHGGF 572 (715)
Q Consensus 514 i~~d~rG~~~~g~~~~~~~-~~~~~--~~~~~d~~~~i~~l~~~------------------~~~d~~~i~l~G~S~GG~ 572 (715)
+++|+|| +|.+..... ..... ..-++|+...++.+.+. ..-...+++|+||||||.
T Consensus 78 ~~~D~rG---HG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~ 154 (332)
T TIGR01607 78 YGLDLQG---HGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGN 154 (332)
T ss_pred EEecccc---cCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccH
Confidence 9999999 554331110 11111 11245666666665541 011135799999999999
Q ss_pred HHHHHHhhCCC--------ceeEEEecCCcchhhhhc----------------------cCCCCC--Cceee-----ecc
Q 005093 573 LTTHLIGQAPD--------KFVAAAARNPLCNLALMV----------------------GTTDIP--DWCYV-----ESY 615 (715)
Q Consensus 573 ~a~~~a~~~p~--------~~~~~v~~~~~~~~~~~~----------------------~~~~~~--~~~~~-----~~~ 615 (715)
+++.++.+++. .++++|+.+|...+.... ...... .+... ..+
T Consensus 155 i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 234 (332)
T TIGR01607 155 IALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDII 234 (332)
T ss_pred HHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHH
Confidence 99988765432 588999888875431100 000000 00000 000
Q ss_pred CCCCCCCCCCCCChhhHHHHHhcC--chhhccCC--CCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 005093 616 GSKGKDSFTESPSVEDLTRFHSKS--PISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 691 (715)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~s--p~~~~~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 691 (715)
..+ ...+...........+.... ....+.++ ++|+|+++|++|.+++++.+..+++++.. ..++++++++++|
T Consensus 235 ~~D-p~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H 311 (332)
T TIGR01607 235 KFD-KFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDH 311 (332)
T ss_pred hcC-ccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCC
Confidence 000 00000000111111111110 01123445 68999999999999999888887776543 3467889999999
Q ss_pred cCCCCCchHHHHHHHHHHHH
Q 005093 692 GIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~ 711 (715)
.+..+....++++.+++||+
T Consensus 312 ~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 312 VITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCccCCCHHHHHHHHHHHhh
Confidence 98877667789999999986
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=166.34 Aligned_cols=243 Identities=14% Similarity=0.106 Sum_probs=144.3
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
.||..+....+.+.........|+||++||..+......+...+..+.++||.|+++|+||.++ +... .+..+...
T Consensus 79 ~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~---s~~~-~~~~~~~~ 154 (388)
T PLN02511 79 PDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCAD---SPVT-TPQFYSAS 154 (388)
T ss_pred CCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCC---CCCC-CcCEEcCC
Confidence 4555665433333211123457899999996554322122345666778999999999999543 3211 11112233
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCc--eeEEEecCCcchhhhhc----cCC---------
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALMV----GTT--------- 604 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~--~~~~v~~~~~~~~~~~~----~~~--------- 604 (715)
..+|+.++++++..+. ...++.++||||||.+++.++.++++. +.+++++++..++.... ...
T Consensus 155 ~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~~~~y~~~~~ 232 (388)
T PLN02511 155 FTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGFNNVYDKALA 232 (388)
T ss_pred chHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccHHHHHHHHHH
Confidence 4789999999998863 346899999999999999999999886 77777777655431000 000
Q ss_pred ---------------CCCCceeeeccCC-CC--------CCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCC
Q 005093 605 ---------------DIPDWCYVESYGS-KG--------KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 660 (715)
Q Consensus 605 ---------------~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~ 660 (715)
....+.-...... .. .....+.. ...+.|...++...+.++++|+|+++|++|+
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~--~~~~yy~~~s~~~~L~~I~vPtLiI~g~dDp 310 (388)
T PLN02511 233 KALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFK--SVDAYYSNSSSSDSIKHVRVPLLCIQAANDP 310 (388)
T ss_pred HHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCC--CHHHHHHHcCchhhhccCCCCeEEEEcCCCC
Confidence 0000000000000 00 00000000 1112344566777888999999999999999
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchH-----HHHHHHHHHHHHh
Q 005093 661 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF-----ESFLNIGLWFKKY 713 (715)
Q Consensus 661 ~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~-----~~~~~i~~wl~~~ 713 (715)
++|...... .+.+....+++++++++||....+.... -+.+.+.+||+..
T Consensus 311 i~p~~~~~~---~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~ 365 (388)
T PLN02511 311 IAPARGIPR---EDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEAL 365 (388)
T ss_pred cCCcccCcH---hHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHH
Confidence 998764321 1222345688999999999755433221 1356788888764
|
|
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-16 Score=148.75 Aligned_cols=225 Identities=18% Similarity=0.238 Sum_probs=139.5
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
..+..|+|+++||-+.. +..|......|+.+||.|+++|+|| ||.+.. +.......+..+...+..++..-
T Consensus 40 g~~~gP~illlHGfPe~--wyswr~q~~~la~~~~rviA~DlrG---yG~Sd~---P~~~~~Yt~~~l~~di~~lld~L- 110 (322)
T KOG4178|consen 40 GPGDGPIVLLLHGFPES--WYSWRHQIPGLASRGYRVIAPDLRG---YGFSDA---PPHISEYTIDELVGDIVALLDHL- 110 (322)
T ss_pred cCCCCCEEEEEccCCcc--chhhhhhhhhhhhcceEEEecCCCC---CCCCCC---CCCcceeeHHHHHHHHHHHHHHh-
Confidence 45578999999997765 6688889999999999999999999 766542 33333344444444444444432
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC-----CCCCCce---eeeccCCC----------
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----TDIPDWC---YVESYGSK---------- 618 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~---------- 618 (715)
..+|+.++||++|+.+|..++..+|+++++.|+++........... .....+. +......+
T Consensus 111 -g~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~ 189 (322)
T KOG4178|consen 111 -GLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEM 189 (322)
T ss_pred -ccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHH
Confidence 2589999999999999999999999999999988765541000000 0000000 00000000
Q ss_pred --------CCCC--CCC-----CC---Chhh-------------------HHHHHhcCc--hhhccCCCCcEEEEeeCCC
Q 005093 619 --------GKDS--FTE-----SP---SVED-------------------LTRFHSKSP--ISHISKVKTPTIFLLGAQD 659 (715)
Q Consensus 619 --------~~~~--~~~-----~~---~~~~-------------------~~~~~~~sp--~~~~~~i~~P~Lii~G~~D 659 (715)
.... +.. .+ .+++ .+.+....+ .....++++|+++++|+.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D 269 (322)
T KOG4178|consen 190 LVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLD 269 (322)
T ss_pred hHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecCc
Confidence 0000 000 00 0111 111111211 2345678899999999999
Q ss_pred CcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 660 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
.+.+...-.+.+++.... -.+.++++++||...+++ ..++.+.++.||++..
T Consensus 270 ~v~~~p~~~~~~rk~vp~--l~~~vv~~~~gH~vqqe~-p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 270 PVLPYPIFGELYRKDVPR--LTERVVIEGIGHFVQQEK-PQEVNQAILGFINSFS 321 (322)
T ss_pred ccccchhHHHHHHHhhcc--ccceEEecCCcccccccC-HHHHHHHHHHHHHhhc
Confidence 998876333444443221 236789999999776555 4589999999999864
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-16 Score=154.36 Aligned_cols=214 Identities=17% Similarity=0.161 Sum_probs=129.4
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC-ce
Q 005093 483 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP-SK 561 (715)
Q Consensus 483 ~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~-~~ 561 (715)
+||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+... .. .....+++.+.+..+++. .+. ++
T Consensus 5 ~vvllHG~~~~--~~~w~~~~~~L~~~~~~via~Dl~G---~G~S~~~---~~-~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHG--AWCWYKLATLLDAAGFKSTCVDLTG---AGISLTD---SN-TVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCC--cCcHHHHHHHHhhCCceEEEecCCc---CCCCCCC---cc-ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 49999997654 4568888899989999999999999 5554211 11 122345555544444443 223 58
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc---hh---hhhc--cCCCCCCceee-eccCCCC-----C------C
Q 005093 562 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC---NL---ALMV--GTTDIPDWCYV-ESYGSKG-----K------D 621 (715)
Q Consensus 562 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~---~~---~~~~--~~~~~~~~~~~-~~~~~~~-----~------~ 621 (715)
+.++||||||.+++.++.++|++++++|++++.. .. .... .......|... ....... . .
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRH 153 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHH
Confidence 9999999999999999999999999999888642 10 0000 00000011000 0000000 0 0
Q ss_pred CCCCCCChhhHHHH-Hh--cCch----------hhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC
Q 005093 622 SFTESPSVEDLTRF-HS--KSPI----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 688 (715)
Q Consensus 622 ~~~~~~~~~~~~~~-~~--~sp~----------~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (715)
.+............ .. ..+. ..+.++++|+|+++|++|..+|+..++.+.+.+.. .+++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~----a~~~~i~~ 229 (255)
T PLN02965 154 YYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPP----AQTYVLED 229 (255)
T ss_pred HHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCc----ceEEEecC
Confidence 00000000000000 00 0000 12346889999999999999999877777666543 67889999
Q ss_pred CCccCCCCCchHHHHHHHHHHHHH
Q 005093 689 DVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 689 ~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+||....++ .+++.+.+.+|++.
T Consensus 230 ~GH~~~~e~-p~~v~~~l~~~~~~ 252 (255)
T PLN02965 230 SDHSAFFSV-PTTLFQYLLQAVSS 252 (255)
T ss_pred CCCchhhcC-HHHHHHHHHHHHHH
Confidence 999877544 44788888888765
|
|
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=158.75 Aligned_cols=216 Identities=15% Similarity=0.240 Sum_probs=132.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
.+.|+||++||.+.. ...|...+..|. +||.|+++|+|| +|.+.... ......++..+.+..+++. .+
T Consensus 11 ~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G---~G~S~~~~----~~~~~~~~~~~~~~~~i~~--~~ 78 (257)
T TIGR03611 11 ADAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRG---TGRSPGEL----PPGYSIAHMADDVLQLLDA--LN 78 (257)
T ss_pred CCCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCC---CCCCCCCC----cccCCHHHHHHHHHHHHHH--hC
Confidence 457899999996554 445666666664 579999999999 55442110 1112355555555444444 24
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc-----------cCCCCCCc-------eeeeccCCCC-
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-----------GTTDIPDW-------CYVESYGSKG- 619 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~- 619 (715)
..++.++|||+||.+++.++.++|++++++|++++........ .......+ .+...+....
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENA 158 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccc
Confidence 5789999999999999999999999999999888754321000 00000000 0000000000
Q ss_pred -------CCCCCCC-CCh---hhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC
Q 005093 620 -------KDSFTES-PSV---EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 688 (715)
Q Consensus 620 -------~~~~~~~-~~~---~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (715)
....... ... .....+...+....+.++++|+|+++|++|..+|++.+..+++.+. ..+++.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~ 234 (257)
T TIGR03611 159 ARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALP----NAQLKLLPY 234 (257)
T ss_pred hhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcC----CceEEEECC
Confidence 0000000 000 0011122233345567889999999999999999988887776653 367888999
Q ss_pred CCccCCCCCchHHHHHHHHHHHH
Q 005093 689 DVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 689 ~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
+||.+... +..++.+.+.+||+
T Consensus 235 ~gH~~~~~-~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 235 GGHASNVT-DPETFNRALLDFLK 256 (257)
T ss_pred CCCCcccc-CHHHHHHHHHHHhc
Confidence 99987654 45578888988885
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-17 Score=148.50 Aligned_cols=242 Identities=16% Similarity=0.196 Sum_probs=157.2
Q ss_pred ccccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhh----
Q 005093 453 VSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA---- 528 (715)
Q Consensus 453 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~---- 528 (715)
..++|+.-+|.+|.||+.+|.. ..++.|+||..||-....+ .| ..+-.++..||+|+.+|.||.+++..+-
T Consensus 57 ydvTf~g~~g~rI~gwlvlP~~--~~~~~P~vV~fhGY~g~~g--~~-~~~l~wa~~Gyavf~MdvRGQg~~~~dt~~~p 131 (321)
T COG3458 57 YDVTFTGYGGARIKGWLVLPRH--EKGKLPAVVQFHGYGGRGG--EW-HDMLHWAVAGYAVFVMDVRGQGSSSQDTADPP 131 (321)
T ss_pred EEEEEeccCCceEEEEEEeecc--cCCccceEEEEeeccCCCC--Cc-cccccccccceeEEEEecccCCCccccCCCCC
Confidence 3457888899999999999984 4489999999999433321 22 1233467899999999999965542211
Q ss_pred hh-cCCCC-----------C-CccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 529 LQ-SLPGK-----------V-GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 529 ~~-~~~~~-----------~-~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
.. ..++. + ...-+.|+..+++-+.+...+|.+||++.|.|.||.+++.+++.. .+++++++..|.+
T Consensus 132 ~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~-~rik~~~~~~Pfl 210 (321)
T COG3458 132 GGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALD-PRIKAVVADYPFL 210 (321)
T ss_pred CCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcC-hhhhccccccccc
Confidence 00 00100 0 011256899999999999889999999999999999999888864 5899999999976
Q ss_pred hhhhh-ccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHH
Q 005093 596 NLALM-VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 674 (715)
Q Consensus 596 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (715)
.-... ........+.-...|.. .......+-.+.+...+..+.+.+++.|+|+..|-.|++||+.-...+++++
T Consensus 211 ~df~r~i~~~~~~~ydei~~y~k-----~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l 285 (321)
T COG3458 211 SDFPRAIELATEGPYDEIQTYFK-----RHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNAL 285 (321)
T ss_pred ccchhheeecccCcHHHHHHHHH-----hcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhcc
Confidence 42111 10000000000000000 0011112223344445556678899999999999999999999888888888
Q ss_pred HHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 675 REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 675 ~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
.. +.++.+|+.-.|.-... -..+++..|++.
T Consensus 286 ~~---~K~i~iy~~~aHe~~p~----~~~~~~~~~l~~ 316 (321)
T COG3458 286 TT---SKTIEIYPYFAHEGGPG----FQSRQQVHFLKI 316 (321)
T ss_pred cC---CceEEEeeccccccCcc----hhHHHHHHHHHh
Confidence 54 35566777777854321 123346666654
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-16 Score=159.19 Aligned_cols=227 Identities=14% Similarity=0.102 Sum_probs=136.9
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
..+.|+||++||.+...........+..|+++||.|+++|+||.++..... +........+|+..+++++.++.
T Consensus 55 ~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~----~~~~~~~~~~D~~~~i~~l~~~~-- 128 (324)
T PRK10985 55 ARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRL----HRIYHSGETEDARFFLRWLQREF-- 128 (324)
T ss_pred CCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCC----cceECCCchHHHHHHHHHHHHhC--
Confidence 345799999999655432223345778899999999999999954321111 11111224789999999998863
Q ss_pred CCceEEEEEeChhHHHHHHHHhhCCCc--eeEEEecCCcchhhhhccCCC----------------------CCCceee-
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALMVGTTD----------------------IPDWCYV- 612 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~~p~~--~~~~v~~~~~~~~~~~~~~~~----------------------~~~~~~~- 612 (715)
...+++++||||||.+++.+++++++. +.++|++++..++........ ...|.-.
T Consensus 129 ~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 208 (324)
T PRK10985 129 GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTL 208 (324)
T ss_pred CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 346899999999999888777776543 788888887754321100000 0000000
Q ss_pred ----eccC-CCCCC----CCCCC--CChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcE
Q 005093 613 ----ESYG-SKGKD----SFTES--PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 681 (715)
Q Consensus 613 ----~~~~-~~~~~----~~~~~--~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 681 (715)
.... ..... .+... ......+.+...++...+.++++|+|+++|++|++++.+....+. +....+
T Consensus 209 ~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~----~~~~~~ 284 (324)
T PRK10985 209 PINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIRKPTLIIHAKDDPFMTHEVIPKPE----SLPPNV 284 (324)
T ss_pred cCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCCCCEEEEecCCCCCCChhhChHHH----HhCCCe
Confidence 0000 00000 00000 011223444456666778899999999999999999876554432 223457
Q ss_pred EEEEeCCCCccCCCCC----chHHHHHHHHHHHHHhc
Q 005093 682 KVIVFPNDVHGIERPQ----SDFESFLNIGLWFKKYC 714 (715)
Q Consensus 682 ~~~~~~~~~H~~~~~~----~~~~~~~~i~~wl~~~l 714 (715)
++++++++||...... ...=.-+.+.+||+..+
T Consensus 285 ~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 285 EYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred EEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 8899999999644321 12123456888887654
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=160.97 Aligned_cols=220 Identities=16% Similarity=0.167 Sum_probs=132.7
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCC--CCCccchhhHHHHHHHHHHcCCCC
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--KVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~--~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
.|.||++||.+.+ ...|...+..|+++ |.|+++|+|| +|.+....... ......++++.+.+..+++.. .
T Consensus 29 ~~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG---~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l--~ 100 (294)
T PLN02824 29 GPALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLG---YGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDV--V 100 (294)
T ss_pred CCeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCC---CCCCCCCccccccccccCCHHHHHHHHHHHHHHh--c
Confidence 3789999996655 55788888888776 6999999999 55543211000 001234566666655555542 2
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC--------------CCCCc--eeee---------
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT--------------DIPDW--CYVE--------- 613 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~--------------~~~~~--~~~~--------- 613 (715)
.+++.|+||||||.+++.++.++|++++++|++++........... ....+ .+..
T Consensus 101 ~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (294)
T PLN02824 101 GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVK 180 (294)
T ss_pred CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHH
Confidence 4789999999999999999999999999999998753110000000 00000 0000
Q ss_pred -----ccCCC-C-----CCCCC---CCCC-hhhHHHHHhc----CchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHH
Q 005093 614 -----SYGSK-G-----KDSFT---ESPS-VEDLTRFHSK----SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 674 (715)
Q Consensus 614 -----~~~~~-~-----~~~~~---~~~~-~~~~~~~~~~----sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (715)
.+... . ...+. ..+. ......+... .....+.++++|+|+++|++|..+|.+.+..+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~-- 258 (294)
T PLN02824 181 NILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYAN-- 258 (294)
T ss_pred HHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHh--
Confidence 00000 0 00000 0000 0000011111 1123467889999999999999999877655433
Q ss_pred HHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 675 REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 675 ~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
.....++++++++||.... +....+.+.+.+|++++
T Consensus 259 --~~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 259 --FDAVEDFIVLPGVGHCPQD-EAPELVNPLIESFVARH 294 (294)
T ss_pred --cCCccceEEeCCCCCChhh-hCHHHHHHHHHHHHhcC
Confidence 2234678999999997664 44557899999999864
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.6e-16 Score=155.06 Aligned_cols=229 Identities=13% Similarity=0.153 Sum_probs=137.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|.+++.+... .+...|.||++||.+.+ ...|...+..|.+ +|.|+++|+|| +|.+.... ....
T Consensus 10 ~~~~~~~~~~~-----~~~~~~plvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~~-----~~~~ 73 (276)
T TIGR02240 10 DGQSIRTAVRP-----GKEGLTPLLIFNGIGAN--LELVFPFIEALDP-DLEVIAFDVPG---VGGSSTPR-----HPYR 73 (276)
T ss_pred CCcEEEEEEec-----CCCCCCcEEEEeCCCcc--hHHHHHHHHHhcc-CceEEEECCCC---CCCCCCCC-----CcCc
Confidence 56677654432 11223579999995544 4467777777754 69999999999 66553211 1223
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc-------CCCCCCc----
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPDW---- 609 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-------~~~~~~~---- 609 (715)
.+++.+.+..+++. .+.+++.|+||||||.+++.+|.++|++++++|++++......... .......
T Consensus 74 ~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (276)
T TIGR02240 74 FPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPS 151 (276)
T ss_pred HHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhccc
Confidence 45555555444444 2457899999999999999999999999999999987653210000 0000000
Q ss_pred e---e-eeccCCC------CCCC----CCCCCChh-hHHHH--HhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHH
Q 005093 610 C---Y-VESYGSK------GKDS----FTESPSVE-DLTRF--HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 672 (715)
Q Consensus 610 ~---~-~~~~~~~------~~~~----~~~~~~~~-~~~~~--~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~ 672 (715)
. . ...+... .... ........ ..... ........+.++++|+|+++|++|+.+|+..+.++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~ 231 (276)
T TIGR02240 152 HGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLAW 231 (276)
T ss_pred cccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHH
Confidence 0 0 0000000 0000 00000000 00000 0111224467889999999999999999988877776
Q ss_pred HHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 673 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 673 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
.+. ..+++++++ ||....+ ...++.+.+.+|+++.
T Consensus 232 ~~~----~~~~~~i~~-gH~~~~e-~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 232 RIP----NAELHIIDD-GHLFLIT-RAEAVAPIIMKFLAEE 266 (276)
T ss_pred hCC----CCEEEEEcC-CCchhhc-cHHHHHHHHHHHHHHh
Confidence 653 367778875 9976644 4568889999999864
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=138.86 Aligned_cols=225 Identities=19% Similarity=0.283 Sum_probs=157.2
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
+....|..++++++..- +...|+++++|+..++++. ...-..-.+.+.+..|+.++||| ||.+... +..
T Consensus 58 ~l~T~D~vtL~a~~~~~-----E~S~pTlLyfh~NAGNmGh-r~~i~~~fy~~l~mnv~ivsYRG---YG~S~Gs--psE 126 (300)
T KOG4391|consen 58 ELRTRDKVTLDAYLMLS-----ESSRPTLLYFHANAGNMGH-RLPIARVFYVNLKMNVLIVSYRG---YGKSEGS--PSE 126 (300)
T ss_pred EEEcCcceeEeeeeecc-----cCCCceEEEEccCCCcccc-hhhHHHHHHHHcCceEEEEEeec---cccCCCC--ccc
Confidence 44667889999999883 2378999999997666532 11122335678899999999999 6655321 111
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeecc
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 615 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (715)
. .-.-|..++++||..++..|..+++++|.|.||.+|..+|+++.+++.|+++...+..+..+.-..-.+ +
T Consensus 127 ~--GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p-------~ 197 (300)
T KOG4391|consen 127 E--GLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFP-------F 197 (300)
T ss_pred c--ceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheecc-------c
Confidence 1 125688999999999999999999999999999999999999999999999988877664332111100 0
Q ss_pred CCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCC
Q 005093 616 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 695 (715)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 695 (715)
.. +. .+.+-....| +....+.+-+.|.|++.|.+|++||+.+.+++++.-..+. .++..||++.|+-..
T Consensus 198 ~~---k~---i~~lc~kn~~---~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~--Krl~eFP~gtHNDT~ 266 (300)
T KOG4391|consen 198 PM---KY---IPLLCYKNKW---LSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSRT--KRLAEFPDGTHNDTW 266 (300)
T ss_pred hh---hH---HHHHHHHhhh---cchhhhccccCceEEeecCccccCCcHHHHHHHHhCchhh--hhheeCCCCccCceE
Confidence 00 00 0001111111 2223345667899999999999999999999988765543 458899999997442
Q ss_pred CCchHHHHHHHHHHHHHh
Q 005093 696 PQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 696 ~~~~~~~~~~i~~wl~~~ 713 (715)
.. ...++.|.+|+.+.
T Consensus 267 i~--dGYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 267 IC--DGYFQAIEDFLAEV 282 (300)
T ss_pred Ee--ccHHHHHHHHHHHh
Confidence 22 24677888888764
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.2e-16 Score=169.00 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=101.1
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~--~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
.+|.+|.+.+++|+ ..++.|+||++||.+.... ..........|+++||+|+++|+||.+.++..+. ...
T Consensus 4 ~DG~~L~~~~~~P~---~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~-----~~~ 75 (550)
T TIGR00976 4 RDGTRLAIDVYRPA---GGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFD-----LLG 75 (550)
T ss_pred CCCCEEEEEEEecC---CCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceE-----ecC
Confidence 47899999999997 3457999999999543321 0011224567899999999999999655443321 111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~ 598 (715)
....+|+.++|+|+.+++..+ .+|+++|+|+||.+++.+|..+|+.++++++.++..++.
T Consensus 76 ~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~ 135 (550)
T TIGR00976 76 SDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLY 135 (550)
T ss_pred cccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchh
Confidence 346899999999999987655 699999999999999999999999999999999887754
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=154.09 Aligned_cols=191 Identities=24% Similarity=0.355 Sum_probs=123.2
Q ss_pred EEEEcCCCCCCCCccc-hHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHc---CCCC
Q 005093 484 IVVLHGGPHSVSLSSY-SKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM---GLAN 558 (715)
Q Consensus 484 vv~iHGg~~~~~~~~~-~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~---~~~d 558 (715)
||++|||++....... ...+..+++ .|+.|+.+|||-+++ ......++|+.++++|+.++ ..+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 7999999988765433 345566664 999999999998544 23345689999999999997 3478
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCC----ceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhh-HH
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LT 633 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 633 (715)
.++|+|+|+|.||.+++.++....+ .++++++++|+.++..... ..+........ ..+........ ..
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~ 142 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDG----PSYDDSNENKD---DPFLPAPKIDWFWK 142 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSC----HHHHHHHHHST---TSSSBHHHHHHHHH
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccc----ccccccccccc---cccccccccccccc
Confidence 9999999999999999999875332 4899999999876610000 00000000000 00000000000 01
Q ss_pred H--------HHhcCchhh-ccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCC
Q 005093 634 R--------FHSKSPISH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 694 (715)
Q Consensus 634 ~--------~~~~sp~~~-~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 694 (715)
. ....+|+.. -.+--+|+++++|+.|..+ .++..++++|++.|++++++++++.+|.|.
T Consensus 143 ~~~~~~~~~~~~~sp~~~~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 143 LYLPGSDRDDPLASPLNASDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HHHSTGGTTSTTTSGGGSSCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred cccccccccccccccccccccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 1 113445443 1112368999999999876 688999999999999999999999999874
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=137.73 Aligned_cols=145 Identities=21% Similarity=0.369 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceE
Q 005093 483 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 562 (715)
Q Consensus 483 ~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i 562 (715)
+||++||++.. ...|...++.|+++||.|+.+|+++.+.. . ...++.++++++.+.. .+.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDS---D-----------GADAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTS---H-----------HSHHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCcc---c-----------hhHHHHHHHHHHHhhc-CCCCcE
Confidence 58999997654 55678889999999999999999984332 1 1235556666654432 278999
Q ss_pred EEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchh
Q 005093 563 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS 642 (715)
Q Consensus 563 ~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 642 (715)
+++|||+||.+++.++.++ ++++++|+++|..+ ..
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~--------------------------------------------~~ 98 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD--------------------------------------------SE 98 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSG--------------------------------------------CH
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccc--------------------------------------------hh
Confidence 9999999999999999987 78999999888311 01
Q ss_pred hccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc
Q 005093 643 HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692 (715)
Q Consensus 643 ~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 692 (715)
.+.+.+.|+++++|++|..+++++..+++++++ .+.+++++++++|+
T Consensus 99 ~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 99 DLAKIRIPVLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp HHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred hhhccCCcEEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 123455699999999999999998888888886 56899999999995
|
... |
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-15 Score=152.89 Aligned_cols=216 Identities=16% Similarity=0.222 Sum_probs=130.6
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.+ ...|...+..|++++ .|+++|+|| +|.+.... ......+..+.+..+++. +..+
T Consensus 27 g~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G---~G~S~~~~-----~~~~~~~~a~dl~~ll~~--l~~~ 93 (295)
T PRK03592 27 GDPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIG---MGASDKPD-----IDYTFADHARYLDAWFDA--LGLD 93 (295)
T ss_pred CCEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCC---CCCCCCCC-----CCCCHHHHHHHHHHHHHH--hCCC
Confidence 4789999997654 457778888898886 999999999 66553211 112345555555555544 2347
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh---h----------ccCCCCCCceee--eccCCCCC-CCCC
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL---M----------VGTTDIPDWCYV--ESYGSKGK-DSFT 624 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~---~----------~~~~~~~~~~~~--~~~~~~~~-~~~~ 624 (715)
++.++|||+||.+++.++.++|++++++|++++...... + ............ ..+..... ..+.
T Consensus 94 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (295)
T PRK03592 94 DVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEENVFIERVLPGSIL 173 (295)
T ss_pred CeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchhhHHhhcccCccc
Confidence 899999999999999999999999999999887432100 0 000000000000 00000000 0000
Q ss_pred CCCChhhHHHH-----------------HhcC--------------chhhccCCCCcEEEEeeCCCCcCCchHHHHHHHH
Q 005093 625 ESPSVEDLTRF-----------------HSKS--------------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 673 (715)
Q Consensus 625 ~~~~~~~~~~~-----------------~~~s--------------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (715)
.....+....+ .... ....+.++++|+|+++|++|..+++....++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~ 253 (295)
T PRK03592 174 RPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRDWCRS 253 (295)
T ss_pred ccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHHHHHH
Confidence 00000000000 0000 0122466899999999999999966555555443
Q ss_pred HHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 674 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 674 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+.. ..++++++++||....+ ...++.+.+.+|+++.
T Consensus 254 ~~~---~~~~~~i~~~gH~~~~e-~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 254 WPN---QLEITVFGAGLHFAQED-SPEEIGAAIAAWLRRL 289 (295)
T ss_pred hhh---hcceeeccCcchhhhhc-CHHHHHHHHHHHHHHh
Confidence 322 36788999999987754 4568899999999864
|
|
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-15 Score=143.31 Aligned_cols=241 Identities=16% Similarity=0.141 Sum_probs=150.4
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
++|..+......++ ...+.|.||.+||-.++........++..+.++||.|+++|.||+++.-.. .+.-+...
T Consensus 57 pdg~~~~ldw~~~p---~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p~~yh~G 129 (345)
T COG0429 57 PDGGFIDLDWSEDP---RAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT----SPRLYHSG 129 (345)
T ss_pred CCCCEEEEeeccCc---cccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc----Ccceeccc
Confidence 34444443344432 445669999999955554455555678889999999999999997653221 23333344
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhH-HHHHHHHhhCCC-ceeEEEecCCcchhhhhccCCCCCCc-eee----
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG-FLTTHLIGQAPD-KFVAAAARNPLCNLALMVGTTDIPDW-CYV---- 612 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~a~~~p~-~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~---- 612 (715)
..+|+..+++++.++. .+.++..+|.|+|| +++.+++.+..+ .+.+++.++...|+.......+...+ ...
T Consensus 130 ~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s~~ly~r~l 207 (345)
T COG0429 130 ETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFSLRLYSRYL 207 (345)
T ss_pred chhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchhhhhhHHHH
Confidence 5699999999999974 46899999999999 555555544322 45666666655555322111111111 000
Q ss_pred ------------e---------------------ccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCC
Q 005093 613 ------------E---------------------SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 659 (715)
Q Consensus 613 ------------~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D 659 (715)
. .+.........+. .+..++|...|.+..+.+|.+|+||||..+|
T Consensus 208 ~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf--~da~dYYr~aSs~~~L~~Ir~PtLii~A~DD 285 (345)
T COG0429 208 LRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGF--ADAEDYYRQASSLPLLPKIRKPTLIINAKDD 285 (345)
T ss_pred HHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCC--CcHHHHHHhccccccccccccceEEEecCCC
Confidence 0 0000001111111 2455778888999999999999999999999
Q ss_pred CcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCC--C-ch-HHHHHHHHHHHHHhc
Q 005093 660 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP--Q-SD-FESFLNIGLWFKKYC 714 (715)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~--~-~~-~~~~~~i~~wl~~~l 714 (715)
++++++........ .+..+.+...+.+||.-... . .. .=..+++.+||+.++
T Consensus 286 P~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 286 PFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred CCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 99986543322211 45678899999999963322 1 11 124567999998875
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=152.22 Aligned_cols=217 Identities=15% Similarity=0.147 Sum_probs=126.0
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
.....|.||++||.+.. ...|...+..|+ .+|.|+++|+|| +|.+.. ... ..+++..+.+..+++.
T Consensus 12 ~~~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G---~G~s~~---~~~---~~~~~~~~d~~~~l~~-- 77 (255)
T PRK10673 12 NPHNNSPIVLVHGLFGS--LDNLGVLARDLV-NDHDIIQVDMRN---HGLSPR---DPV---MNYPAMAQDLLDTLDA-- 77 (255)
T ss_pred CCCCCCCEEEECCCCCc--hhHHHHHHHHHh-hCCeEEEECCCC---CCCCCC---CCC---CCHHHHHHHHHHHHHH--
Confidence 44567889999996555 345666777774 579999999999 554431 111 2334433333333333
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc-hhh-----hhc----c--CCCCCCcee-e----eccCCCC
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLA-----LMV----G--TTDIPDWCY-V----ESYGSKG 619 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~-~~~-----~~~----~--~~~~~~~~~-~----~~~~~~~ 619 (715)
...+++.|+||||||.+++.++.++|++++++|++++.. ... ... . ......... . ..+....
T Consensus 78 l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 234679999999999999999999999999999875321 100 000 0 000000000 0 0000000
Q ss_pred -----CCCCCCCC----ChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCC
Q 005093 620 -----KDSFTESP----SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 690 (715)
Q Consensus 620 -----~~~~~~~~----~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 690 (715)
...+.... .......+........+..+++|+|+++|++|..++.+....+.+.+ ..+++++++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~g 233 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQF----PQARAHVIAGAG 233 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhC----CCcEEEEeCCCC
Confidence 00000000 00000111111112235567899999999999999876655554443 357888999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHH
Q 005093 691 HGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 691 H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
|.... +....+.+.+.+||.+
T Consensus 234 H~~~~-~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 234 HWVHA-EKPDAVLRAIRRYLND 254 (255)
T ss_pred Ceeec-cCHHHHHHHHHHHHhc
Confidence 97654 4455788999999875
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=157.33 Aligned_cols=219 Identities=17% Similarity=0.252 Sum_probs=130.2
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.. ...|...+..|++ +|.|+++|+|| ||.+.. +.. .....++..+.+..+++. ...+
T Consensus 88 gp~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G---~G~S~~---~~~-~~~~~~~~a~~l~~~l~~--l~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLG---FGASDK---PPG-FSYTMETWAELILDFLEE--VVQK 155 (360)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCC---CCCCCC---CCC-ccccHHHHHHHHHHHHHH--hcCC
Confidence 4789999996654 5578788888865 79999999999 665432 111 112344555444433333 2347
Q ss_pred eEEEEEeChhHHHHHHHHh-hCCCceeEEEecCCcchhhhhccCCC------CC-Ccee-------------eeccC-CC
Q 005093 561 KVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTD------IP-DWCY-------------VESYG-SK 618 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~~~~~~~~~~~~~~------~~-~~~~-------------~~~~~-~~ 618 (715)
++.|+|||+||.+++.++. .+|++++++|++++............ .+ .+.+ ..... ..
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRD 235 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHH
Confidence 8999999999999988876 46999999999887532110000000 00 0000 00000 00
Q ss_pred CC-----CCCCCCC--Chhh-------------HHHHH---h----cCchhhccCCCCcEEEEeeCCCCcCCchHH-HHH
Q 005093 619 GK-----DSFTESP--SVED-------------LTRFH---S----KSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQY 670 (715)
Q Consensus 619 ~~-----~~~~~~~--~~~~-------------~~~~~---~----~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~ 670 (715)
.. ..+.... .... ...+. . .+....+.++++|+|+++|++|..+|+... .++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~ 315 (360)
T PLN02679 236 NLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKY 315 (360)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHH
Confidence 00 0000000 0000 00111 0 112234667899999999999999988743 234
Q ss_pred HHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 671 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 671 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
++.+.+.-...++++++++||.... +..+++.+.|.+||++
T Consensus 316 ~~~l~~~ip~~~l~~i~~aGH~~~~-E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 316 FSSLPSQLPNVTLYVLEGVGHCPHD-DRPDLVHEKLLPWLAQ 356 (360)
T ss_pred HHhhhccCCceEEEEcCCCCCCccc-cCHHHHHHHHHHHHHh
Confidence 4555554456889999999997654 4466889999999976
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=158.50 Aligned_cols=236 Identities=14% Similarity=0.137 Sum_probs=139.2
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-HHHHHH---hCCcEEEEEcCCCCCCCchhhhhcCCC
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS---SVGYSLLIVNYRGSLGFGEEALQSLPG 534 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~-~~~~la---~~G~~vi~~d~rG~~~~g~~~~~~~~~ 534 (715)
+..+.+++.....|.+ ....|.||++||.+.. ...|.. .+..|+ +++|.|+++|+|| ||.+... .
T Consensus 182 ~~~~~~l~~~~~gp~~---~~~k~~VVLlHG~~~s--~~~W~~~~~~~L~~~~~~~yrVia~Dl~G---~G~S~~p---~ 250 (481)
T PLN03087 182 SSSNESLFVHVQQPKD---NKAKEDVLFIHGFISS--SAFWTETLFPNFSDAAKSTYRLFAVDLLG---FGRSPKP---A 250 (481)
T ss_pred eeCCeEEEEEEecCCC---CCCCCeEEEECCCCcc--HHHHHHHHHHHHHHHhhCCCEEEEECCCC---CCCCcCC---C
Confidence 3345677777766652 2335789999996654 334543 334444 4799999999999 6655321 1
Q ss_pred CCCccchhhHHHHH-HHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh--------c-cCC
Q 005093 535 KVGSQDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--------V-GTT 604 (715)
Q Consensus 535 ~~~~~~~~d~~~~i-~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~--------~-~~~ 604 (715)
. ....+++..+.+ ..+.+. .+.+++.++||||||.+++.++.++|++++++|++++....... . ...
T Consensus 251 ~-~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~~~~~~~~~ 327 (481)
T PLN03087 251 D-SLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQATQYVMRKVA 327 (481)
T ss_pred C-CcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHHHHHHHHhc
Confidence 1 112355555555 244444 24578999999999999999999999999999999864321100 0 000
Q ss_pred CCCCcee----------eeccCCCC----------CCC----CCCCCChhh-HHHH---------------Hhc-----C
Q 005093 605 DIPDWCY----------VESYGSKG----------KDS----FTESPSVED-LTRF---------------HSK-----S 639 (715)
Q Consensus 605 ~~~~~~~----------~~~~~~~~----------~~~----~~~~~~~~~-~~~~---------------~~~-----s 639 (715)
....|.. ........ ... ......... .+.+ ... .
T Consensus 328 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~l~ 407 (481)
T PLN03087 328 PRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNIICGSGSKLD 407 (481)
T ss_pred ccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHHhchhhhhh
Confidence 0000000 00000000 000 000000000 0000 000 0
Q ss_pred c-h-hhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 640 P-I-SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 640 p-~-~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
. + ....++++|+|+++|++|..+|++.+..+.+.+. .+++++++++||.....+....+.+.+.+|++.
T Consensus 408 ~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP----~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 408 GYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVP----RARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred hHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCC----CCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 0 0 1123688999999999999999998877766663 478999999999866434456788888888754
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-16 Score=153.95 Aligned_cols=214 Identities=15% Similarity=0.184 Sum_probs=128.6
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
..|+||++||.+.. ...|...++.| ..||.|+++|+|| +|.+.. . ......++..+.+..+++. .+.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G---~G~s~~---~--~~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPAL-TPDFRVLRYDKRG---HGLSDA---P--EGPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHh-hcccEEEEecCCC---CCCCCC---C--CCCCCHHHHHHHHHHHHHH--hCC
Confidence 56899999995544 44566677777 4689999999999 444421 1 1122455666656555554 245
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC----CCCCCceee---e-ccCCCCCCCCCCCCC--h
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----TDIPDWCYV---E-SYGSKGKDSFTESPS--V 629 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~~---~-~~~~~~~~~~~~~~~--~ 629 (715)
+++.++|||+||.+++.+|.++|++++++++.++.......... ......... . .........+..... .
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 78999999999999999999999999999888764321100000 000000000 0 000000000000000 0
Q ss_pred hh----------------HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 630 ED----------------LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 630 ~~----------------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
.. ...+...+....+.++++|+|+++|++|..+|.+....+.+.+. ..+++.+++++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 234 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIP 234 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcc
Confidence 00 00111122234466788999999999999999887776665553 36788999999977
Q ss_pred CCCCchHHHHHHHHHHHH
Q 005093 694 ERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 694 ~~~~~~~~~~~~i~~wl~ 711 (715)
.... ...+.+.+.+||+
T Consensus 235 ~~~~-p~~~~~~i~~fl~ 251 (251)
T TIGR02427 235 CVEQ-PEAFNAALRDFLR 251 (251)
T ss_pred cccC-hHHHHHHHHHHhC
Confidence 6543 4567777777763
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=152.66 Aligned_cols=215 Identities=15% Similarity=0.134 Sum_probs=130.0
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
..|+||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+... . .....+++..+.+..+++.. +.
T Consensus 27 ~~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G---~G~S~~~---~-~~~~~~~~~~~~l~~~i~~~--~~ 94 (278)
T TIGR03056 27 AGPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPG---HGFTRAP---F-RFRFTLPSMAEDLSALCAAE--GL 94 (278)
T ss_pred CCCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCC---CCCCCCc---c-ccCCCHHHHHHHHHHHHHHc--CC
Confidence 35889999996544 4567777777755 69999999999 5544311 1 11234566666666666542 34
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCC---c----eeee------ccCCCCCCCC---
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD---W----CYVE------SYGSKGKDSF--- 623 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~---~----~~~~------~~~~~~~~~~--- 623 (715)
++++|+||||||.+++.++.++|++++++|++++......-......+. . .... .........+
T Consensus 95 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (278)
T TIGR03056 95 SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRD 174 (278)
T ss_pred CCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhc
Confidence 6789999999999999999999999999988877543110000000000 0 0000 0000000000
Q ss_pred ----CCCCChh--------------hHHHHHhc--C-chhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEE
Q 005093 624 ----TESPSVE--------------DLTRFHSK--S-PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 682 (715)
Q Consensus 624 ----~~~~~~~--------------~~~~~~~~--s-p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (715)
....... ........ . ....+.++++|+|+++|++|..+|......+.+.+. .++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~----~~~ 250 (278)
T TIGR03056 175 TGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVP----TAT 250 (278)
T ss_pred cccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhcc----CCe
Confidence 0000000 00000000 0 122456788999999999999999887776655543 367
Q ss_pred EEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 683 VIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 683 ~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
+++++++||.+.... ..++.+.|.+|++
T Consensus 251 ~~~~~~~gH~~~~e~-p~~~~~~i~~f~~ 278 (278)
T TIGR03056 251 LHVVPGGGHLVHEEQ-ADGVVGLILQAAE 278 (278)
T ss_pred EEEECCCCCcccccC-HHHHHHHHHHHhC
Confidence 889999999876544 5578888888874
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-16 Score=156.60 Aligned_cols=223 Identities=18% Similarity=0.216 Sum_probs=139.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH--------HHHHHHhCCcEEEEEcCCCCCCCchhhhhcC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--------SLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 532 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~--------~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~ 532 (715)
||.+|.+.+|+| +....++.|+||..|+.+.......-.. ....|+++||+|+..|.||.++++..+..
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~-- 77 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDP-- 77 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-T--
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcccc--
Confidence 689999999999 4447899999999998443210000000 11238999999999999997776655521
Q ss_pred CCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh-hccCC---CC--
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTT---DI-- 606 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~-~~~~~---~~-- 606 (715)
....+.+|..++|+|+.++++ ...||+++|.|++|..++.+|+..|..++|++..++..++.. ..... ..
T Consensus 78 ---~~~~e~~D~~d~I~W~~~Qpw-s~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~~ 153 (272)
T PF02129_consen 78 ---MSPNEAQDGYDTIEWIAAQPW-SNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLGF 153 (272)
T ss_dssp ---TSHHHHHHHHHHHHHHHHCTT-EEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCCH
T ss_pred ---CChhHHHHHHHHHHHHHhCCC-CCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcccccc
Confidence 155578999999999999975 457999999999999999999988899999999988877653 11000 00
Q ss_pred -CCce---e-eeccCCCC--CC------------------CCCCC-C-------ChhhHHHHHhcCchhhccCCCCcEEE
Q 005093 607 -PDWC---Y-VESYGSKG--KD------------------SFTES-P-------SVEDLTRFHSKSPISHISKVKTPTIF 653 (715)
Q Consensus 607 -~~~~---~-~~~~~~~~--~~------------------~~~~~-~-------~~~~~~~~~~~sp~~~~~~i~~P~Li 653 (715)
..|. . ........ .. ..... + .......+...++...+.++++|+|+
T Consensus 154 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l~ 233 (272)
T PF02129_consen 154 FAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVLI 233 (272)
T ss_dssp HHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEEE
T ss_pred hhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEEE
Confidence 0110 0 00000000 00 00000 0 00011223344444567899999999
Q ss_pred EeeCCCCcCCchHHHHHHHHHHHcC-CcEEEEEeCCCCcc
Q 005093 654 LLGAQDLRVPVSNGLQYARALREKG-VETKVIVFPNDVHG 692 (715)
Q Consensus 654 i~G~~D~~v~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~ 692 (715)
+.|..|.... ..+.+.+++++..+ .+.++++-|. +|+
T Consensus 234 v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 234 VGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred ecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 9999997666 88899999999888 6778888775 564
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=152.80 Aligned_cols=227 Identities=17% Similarity=0.177 Sum_probs=131.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~-~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
|.+|.|++..|+ ..++.|+||++-|.... ...+.. ...+|+.+|++++++|.+|.+ .+....+..+ .
T Consensus 174 g~~I~g~LhlP~---~~~p~P~VIv~gGlDs~--qeD~~~l~~~~l~~rGiA~LtvDmPG~G---~s~~~~l~~D----~ 241 (411)
T PF06500_consen 174 GKTIPGYLHLPS---GEKPYPTVIVCGGLDSL--QEDLYRLFRDYLAPRGIAMLTVDMPGQG---ESPKWPLTQD----S 241 (411)
T ss_dssp TCEEEEEEEESS---SSS-EEEEEEE--TTS---GGGGHHHHHCCCHHCT-EEEEE--TTSG---GGTTT-S-S-----C
T ss_pred CcEEEEEEEcCC---CCCCCCEEEEeCCcchh--HHHHHHHHHHHHHhCCCEEEEEccCCCc---ccccCCCCcC----H
Confidence 478999999998 67889988887663322 333333 345789999999999999954 3322111111 1
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcch-hhhhc-cCCCCCCceeeeccCCC
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LALMV-GTTDIPDWCYVESYGSK 618 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 618 (715)
-.-..++++||.+.+.+|.+||+++|.|+||++|.++|..++++++++|+.+|++. +..-. .....+ ..+...+..
T Consensus 242 ~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~~P-~my~d~LA~- 319 (411)
T PF06500_consen 242 SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQRVP-DMYLDVLAS- 319 (411)
T ss_dssp CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTTS--HHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhcCC-HHHHHHHHH-
Confidence 12345789999999999999999999999999999999888899999999888653 21110 001111 111111100
Q ss_pred CCCCCCC-CCChhh-HHHHHhcCchh--hc--cCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCC-c
Q 005093 619 GKDSFTE-SPSVED-LTRFHSKSPIS--HI--SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV-H 691 (715)
Q Consensus 619 ~~~~~~~-~~~~~~-~~~~~~~sp~~--~~--~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~-H 691 (715)
++.. ....+. ...+...|... .+ .+..+|+|.+.|++|+++|.+++..+ ...+.+-+...++... |
T Consensus 320 ---rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~li----a~~s~~gk~~~~~~~~~~ 392 (411)
T PF06500_consen 320 ---RLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLI----AESSTDGKALRIPSKPLH 392 (411)
T ss_dssp ---HCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHH----HHTBTT-EEEEE-SSSHH
T ss_pred ---HhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHH----HhcCCCCceeecCCCccc
Confidence 0000 011111 12233444422 23 56678999999999999998876544 3334445566666544 5
Q ss_pred cCCCCCchHHHHHHHHHHHHHhc
Q 005093 692 GIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
.-. ...+..+.+||++.|
T Consensus 393 ~gy-----~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 393 MGY-----PQALDEIYKWLEDKL 410 (411)
T ss_dssp HHH-----HHHHHHHHHHHHHHH
T ss_pred cch-----HHHHHHHHHHHHHhc
Confidence 432 467889999999865
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-15 Score=143.81 Aligned_cols=191 Identities=19% Similarity=0.231 Sum_probs=114.1
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHH-HHHhCCcEEEEEcCCC---CCCCch---hhhhcCCCCCCc-cchhhH----
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRG---SLGFGE---EALQSLPGKVGS-QDVNDV---- 544 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~-~la~~G~~vi~~d~rG---~~~~g~---~~~~~~~~~~~~-~~~~d~---- 544 (715)
..+..|+||++||.+... ..+..... .+......++.++-+. ....|. .|.......... .+.+++
T Consensus 10 ~~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~ 87 (216)
T PF02230_consen 10 KGKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESA 87 (216)
T ss_dssp SST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHH
T ss_pred CCCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHH
Confidence 456789999999955442 22222222 2234567777776431 111222 343221111111 122222
Q ss_pred ---HHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCC
Q 005093 545 ---LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 621 (715)
Q Consensus 545 ---~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (715)
.+.|+...+.+ ++.+||++.|+|.||.+++.++.++|..+.++|++++.......
T Consensus 88 ~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------------------- 145 (216)
T PF02230_consen 88 ERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC---------------------
T ss_pred HHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc---------------------
Confidence 23333333333 89999999999999999999999999999999999986521100
Q ss_pred CCCCCCChhhHHHHHhcCchhhccC-CCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchH
Q 005093 622 SFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 700 (715)
Q Consensus 622 ~~~~~~~~~~~~~~~~~sp~~~~~~-i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 700 (715)
.. ..... -++|++++||..|+++|.+.++..++.|++.+.++++..|++.||.+. .
T Consensus 146 -------~~-----------~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~ 202 (216)
T PF02230_consen 146 -------LE-----------DRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----P 202 (216)
T ss_dssp -------CH-----------CCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------H
T ss_pred -------cc-----------ccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----H
Confidence 00 00011 158999999999999999999999999999999999999999999886 4
Q ss_pred HHHHHHHHHHHHhc
Q 005093 701 ESFLNIGLWFKKYC 714 (715)
Q Consensus 701 ~~~~~i~~wl~~~l 714 (715)
+.++.+.+||++++
T Consensus 203 ~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 203 EELRDLREFLEKHI 216 (216)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhC
Confidence 67889999999874
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-15 Score=137.35 Aligned_cols=183 Identities=14% Similarity=0.125 Sum_probs=116.8
Q ss_pred cEEEEEcCCCCCCCCccch--HHHHHHHh--CCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 482 PLIVVLHGGPHSVSLSSYS--KSLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~--~~~~~la~--~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
|.||++||.+.+ ...|. .....+++ .+|.|+++|++| ++ ++..+.+..+.++.
T Consensus 2 p~illlHGf~ss--~~~~~~~~~~~~l~~~~~~~~v~~~dl~g---~~----------------~~~~~~l~~l~~~~-- 58 (190)
T PRK11071 2 STLLYLHGFNSS--PRSAKATLLKNWLAQHHPDIEMIVPQLPP---YP----------------ADAAELLESLVLEH-- 58 (190)
T ss_pred CeEEEECCCCCC--cchHHHHHHHHHHHHhCCCCeEEeCCCCC---CH----------------HHHHHHHHHHHHHc--
Confidence 679999995554 33444 23455555 379999999998 42 24455555555552
Q ss_pred CCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh-hccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHH
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 636 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (715)
+.+++.++|+|+||.+++.++.++|. .+|+++|..+... ......... ..+.. ..+. ......+...
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~---~~vl~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~--~~~~~~~d~~ 126 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML---PAVVVNPAVRPFELLTDYLGENE----NPYTG---QQYV--LESRHIYDLK 126 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC---CEEEECCCCCHHHHHHHhcCCcc----cccCC---CcEE--EcHHHHHHHH
Confidence 34689999999999999999999883 3577777665321 110000000 00000 0000 0122333333
Q ss_pred hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 637 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 637 ~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
...+.. +. ..+|++++||++|++||++.+.++++. +++++++|++|.+... ++.++.+.+|+.
T Consensus 127 ~~~~~~-i~-~~~~v~iihg~~De~V~~~~a~~~~~~-------~~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 127 VMQIDP-LE-SPDLIWLLQQTGDEVLDYRQAVAYYAA-------CRQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred hcCCcc-CC-ChhhEEEEEeCCCCcCCHHHHHHHHHh-------cceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 333322 33 567899999999999999999998884 3566889999999544 578888999875
|
|
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=152.22 Aligned_cols=238 Identities=13% Similarity=0.159 Sum_probs=140.2
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC--CCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV--SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~--~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
.+|..+.|+++.|.+ . +.+.||++|||.... ....+...++.|+++||.|+++|+|| +|.+... ...+
T Consensus 9 ~~~~~l~g~~~~p~~---~-~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G---~G~S~~~--~~~~- 78 (274)
T TIGR03100 9 CEGETLVGVLHIPGA---S-HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRG---MGDSEGE--NLGF- 78 (274)
T ss_pred cCCcEEEEEEEcCCC---C-CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCC---CCCCCCC--CCCH-
Confidence 357889999999963 2 245677777765332 12234566788999999999999999 5554311 0111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCC
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 617 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (715)
....+|+.++++++.+.. ...++|+++|||+||.+++.++.. +.+++++|+++|.............. ..+......
T Consensus 79 ~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~~-~~~~~~~~~ 155 (274)
T TIGR03100 79 EGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRIR-HYYLGQLLS 155 (274)
T ss_pred HHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHHH-HHHHHHHhC
Confidence 123578999999998752 123679999999999999988764 56899999999874311100000000 000000000
Q ss_pred -CCCC-CCCCCCChh-hHHHHHh----c---C-----------chhhccCCCCcEEEEeeCCCCcCCchHH-----HHHH
Q 005093 618 -KGKD-SFTESPSVE-DLTRFHS----K---S-----------PISHISKVKTPTIFLLGAQDLRVPVSNG-----LQYA 671 (715)
Q Consensus 618 -~~~~-~~~~~~~~~-~~~~~~~----~---s-----------p~~~~~~i~~P~Lii~G~~D~~v~~~~~-----~~~~ 671 (715)
.... ...+..... ....+.. . . -...+.++.+|+|+++|..|...+.... ....
T Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~~~~~~~~~~~ 235 (274)
T TIGR03100 156 ADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFADSVLGEPAWR 235 (274)
T ss_pred hHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHHHHhccChhhH
Confidence 0000 000000000 0000000 0 0 0123456789999999999987521100 1111
Q ss_pred HHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 672 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 672 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+.+. ...++++.+++++|.+..+..+.++.+.|.+||++
T Consensus 236 ~~l~--~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 236 GALE--DPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHhh--cCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 2122 14588999999999887777778899999999963
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-15 Score=150.34 Aligned_cols=218 Identities=15% Similarity=0.207 Sum_probs=125.8
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
..|.||++||++... ...+......+.+.||.|+++|+|| +|.+.... .......++++.+.+..+.+.. +.
T Consensus 24 ~~~~vl~~hG~~g~~-~~~~~~~~~~l~~~g~~vi~~d~~G---~G~s~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~ 95 (288)
T TIGR01250 24 EKIKLLLLHGGPGMS-HEYLENLRELLKEEGREVIMYDQLG---CGYSDQPD--DSDELWTIDYFVDELEEVREKL--GL 95 (288)
T ss_pred CCCeEEEEcCCCCcc-HHHHHHHHHHHHhcCCEEEEEcCCC---CCCCCCCC--cccccccHHHHHHHHHHHHHHc--CC
Confidence 357899999976553 2233444455566699999999999 55443110 0100134566666666666652 45
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc-----CCCCCCc-e-eeecc------CCC----CCCC
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----TTDIPDW-C-YVESY------GSK----GKDS 622 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-----~~~~~~~-~-~~~~~------~~~----~~~~ 622 (715)
+++.++|||+||.+++.++.++|++++++++.+++........ ....... . ..... ... ....
T Consensus 96 ~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (288)
T TIGR01250 96 DKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVEV 175 (288)
T ss_pred CcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 6799999999999999999999999999998887543211100 0000000 0 00000 000 0000
Q ss_pred C------CCCCChhhHHH------------------------HHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHH
Q 005093 623 F------TESPSVEDLTR------------------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 672 (715)
Q Consensus 623 ~------~~~~~~~~~~~------------------------~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~ 672 (715)
+ ........... +...+....+.++++|+|+++|+.|.. ++..+..+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~-~~~~~~~~~~ 254 (288)
T TIGR01250 176 FYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM-TPEAAREMQE 254 (288)
T ss_pred HHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc-CHHHHHHHHH
Confidence 0 00000000000 001112234567889999999999984 5565555554
Q ss_pred HHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 673 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 673 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
.+. .+++++++++||..... ...++.+.|.+|++
T Consensus 255 ~~~----~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 255 LIA----GSRLVVFPDGSHMTMIE-DPEVYFKLLSDFIR 288 (288)
T ss_pred hcc----CCeEEEeCCCCCCcccC-CHHHHHHHHHHHhC
Confidence 443 46788999999987654 45578888888874
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-14 Score=138.61 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=91.9
Q ss_pred CCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCc
Q 005093 248 SEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCF 327 (715)
Q Consensus 248 ~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~ 327 (715)
..+++.+++...-+.+.....|||||+++..-.+ .+||++|++++..+.+......
T Consensus 389 ~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr-----------~el~vididngnv~~idkS~~~------------- 444 (668)
T COG4946 389 KDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDR-----------FELWVIDIDNGNVRLIDKSEYG------------- 444 (668)
T ss_pred cCCceEEEeeCCccceEEEEEcCCCcEEEEEcCc-----------eEEEEEEecCCCeeEecccccc-------------
Confidence 3455556666667778888999999988654433 5799999999888665443322
Q ss_pred cccccCCCCCCccccCCCEEEEEeeeC-CeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCC
Q 005093 328 PGLYSSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 402 (715)
Q Consensus 328 ~g~~~~~~~~~~~~~dg~~l~~~~~~~-~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~ 402 (715)
-+..+.|+|+++.+.+....+ -.++|-.+|+++++...++.+.+.-..++|.+|++.|++.+...-.|.
T Consensus 445 ------lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs 514 (668)
T COG4946 445 ------LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPS 514 (668)
T ss_pred ------eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCC
Confidence 245678999999877766533 245688889999999999887763234799999999999987766665
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=150.43 Aligned_cols=262 Identities=17% Similarity=0.182 Sum_probs=165.8
Q ss_pred CCCCceEEEEecCCC-----CCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 51 SPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 51 Spdg~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
||||+++++..+..+ ....++..+ ..++.+++....... ..+.|||||++|+|+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~----------~~~~~sP~g~~~~~v~--------- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKL----------QDAKWSPDGKYIAFVR--------- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTB----------SEEEE-SSSTEEEEEE---------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcccc----------ccceeecCCCeeEEEe---------
Confidence 899999999765431 223455555 555555554431222 7999999999999973
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCC--C--------------C-ccc
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK--S--------------L-SVG 187 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~--------------~-~~~ 187 (715)
.++||+.++.+++.++|| ..+ . + ...
T Consensus 62 ------------------------------------~~nly~~~~~~~~~~~lT-~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 62 ------------------------------------DNNLYLRDLATGQETQLT-TDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp ------------------------------------TTEEEEESSTTSEEEESE-S--TTTEEESB--HHHHHHTSSSSB
T ss_pred ------------------------------------cCceEEEECCCCCeEEec-cccceeEEcCccceecccccccccc
Confidence 267999999999999996 211 0 1 234
Q ss_pred eEEEecCCCCCccEEEEEeecCccce-----------------eeeeee----ecCCceEEEEecccccchhhhhhhhcc
Q 005093 188 QVVWAPLNEGLHQYLVFVGWSSETRK-----------------LGIKYC----YNRPCALYAVRVSLYKSEASELELKES 246 (715)
Q Consensus 188 ~~~~spdg~~~~~~i~~~~~~~~~~~-----------------~g~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~ 246 (715)
.+.|||||++ |+|....+..-+ .-+.+. .+....|+++|+
T Consensus 105 ~~~WSpd~~~----la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~--------------- 165 (353)
T PF00930_consen 105 AVWWSPDSKY----LAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL--------------- 165 (353)
T ss_dssp SEEE-TTSSE----EEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES---------------
T ss_pred ceEECCCCCE----EEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC---------------
Confidence 6789999999 999865332110 111111 122335777786
Q ss_pred CCCCCCceecC------CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 247 SSEDLPVVNLT------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 247 ~~~~~~~~~lt------~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
++++...+. ........+.|++|+++|++....+. .....|+++|..++..+.+..... +
T Consensus 166 --~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~------q~~~~l~~~d~~tg~~~~~~~e~~---~--- 231 (353)
T PF00930_consen 166 --ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD------QNRLDLVLCDASTGETRVVLEETS---D--- 231 (353)
T ss_dssp --SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT------STEEEEEEEEECTTTCEEEEEEES---S---
T ss_pred --CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC------CCEEEEEEEECCCCceeEEEEecC---C---
Confidence 666654433 23445788999999997777766543 345678888988766543331111 1
Q ss_pred cCCCCCccccccCCCCCCccc-cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCc-eeEEEeecCCEEEEEEeCC
Q 005093 321 CAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF-SWSLLTLDGDNIIAVSSSP 398 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~-~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~-~~~~~s~~~~~l~~~~~~~ 398 (715)
.|-.....+.|. +++..+++.+...|..+||.++..++..++|+.+...+ ....++.+++.|+|++...
T Consensus 232 ---------~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 232 ---------GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp ---------SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred ---------cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCC
Confidence 122222333444 78888888888889999999999999999999887655 4457788899999998763
Q ss_pred C-CCCeEEEEeec
Q 005093 399 V-DVPQVKYGYFV 410 (715)
Q Consensus 399 ~-~p~~l~~~~~~ 410 (715)
. .-..||++++.
T Consensus 303 ~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 303 NPGERHLYRVSLD 315 (353)
T ss_dssp GTTSBEEEEEETT
T ss_pred CCCceEEEEEEeC
Confidence 3 33457777776
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=144.66 Aligned_cols=213 Identities=15% Similarity=0.216 Sum_probs=126.9
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHH-HHHHHHcCCCCCc
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 560 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~-i~~l~~~~~~d~~ 560 (715)
|+||++||.+.. ...|......|+ +||.|+++|+|| +|.+.. +......+.+++.+. +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~~--~~~~~~~~~~L~-~~~~v~~~d~~g---~G~s~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGS--GADWQALIELLG-PHFRCLAIDLPG---HGSSQS---PDEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCc--hhhHHHHHHHhc-ccCeEEEEcCCC---CCCCCC---CCccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 789999996554 456777888887 899999999999 444421 111122335555554 5555554 3467
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC----------------CCCCC----ceeeeccCCCC-
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----------------TDIPD----WCYVESYGSKG- 619 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~----------------~~~~~----~~~~~~~~~~~- 619 (715)
++.++|||+||.+++.++.++|++++++++.++...+...... ..... +.....+....
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLFASQKN 150 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCceeeeccc
Confidence 8999999999999999999999999999998875432210000 00000 00000000000
Q ss_pred CCC---------CCCCCChhhHHHHH------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEE
Q 005093 620 KDS---------FTESPSVEDLTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 684 (715)
Q Consensus 620 ~~~---------~~~~~~~~~~~~~~------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (715)
... ............+. ..++...+.++++|+|+++|++|..++ . ..+.+.+....++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~----~~~~~~~~~~~~~~~ 225 (251)
T TIGR03695 151 LPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-Q----IAKEMQKLLPNLTLV 225 (251)
T ss_pred CChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-H----HHHHHHhcCCCCcEE
Confidence 000 00000000000110 112223456789999999999998653 2 233455444567899
Q ss_pred EeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 685 VFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 685 ~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
.++++||.+.... ...+...|.+||+
T Consensus 226 ~~~~~gH~~~~e~-~~~~~~~i~~~l~ 251 (251)
T TIGR03695 226 IIANAGHNIHLEN-PEAFAKILLAFLE 251 (251)
T ss_pred EEcCCCCCcCccC-hHHHHHHHHHHhC
Confidence 9999999776544 3467778888873
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=150.24 Aligned_cols=222 Identities=17% Similarity=0.259 Sum_probs=125.3
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc-cchh-hHHHHHHHHHHcCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS-QDVN-DVLTAIDHVIDMGL 556 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~-~~~~-d~~~~i~~l~~~~~ 556 (715)
+..|.||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+.... ..... .... .+.+.+..+.+.
T Consensus 103 ~~~p~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~rG---~G~S~~~~--~~~~~~~~~~~~~~~~i~~~~~~-- 172 (402)
T PLN02894 103 EDAPTLVMVHGYGAS--QGFFFRNFDALAS-RFRVIAIDQLG---WGGSSRPD--FTCKSTEETEAWFIDSFEEWRKA-- 172 (402)
T ss_pred CCCCEEEEECCCCcc--hhHHHHHHHHHHh-CCEEEEECCCC---CCCCCCCC--cccccHHHHHHHHHHHHHHHHHH--
Confidence 456899999996544 3456566677765 59999999999 55442111 01110 1111 223333222222
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC----CC-CCCce---------------------
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----TD-IPDWC--------------------- 610 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~----~~-~~~~~--------------------- 610 (715)
.+.+++.|+||||||++++.++.++|++++++|+++|..-....... .. ...|.
T Consensus 173 l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (402)
T PLN02894 173 KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRGL 252 (402)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHhc
Confidence 24568999999999999999999999999999998875311100000 00 00000
Q ss_pred ----------ee-eccCCCCCCCCCCCCChhhH-H-----------------HH-----HhcCch-hhccCCCCcEEEEe
Q 005093 611 ----------YV-ESYGSKGKDSFTESPSVEDL-T-----------------RF-----HSKSPI-SHISKVKTPTIFLL 655 (715)
Q Consensus 611 ----------~~-~~~~~~~~~~~~~~~~~~~~-~-----------------~~-----~~~sp~-~~~~~i~~P~Lii~ 655 (715)
+. ..+................. + .. ....++ ..+.++++|+++++
T Consensus 253 gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~ 332 (402)
T PLN02894 253 GPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIY 332 (402)
T ss_pred cchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEE
Confidence 00 00000000000000000000 0 00 011222 34677899999999
Q ss_pred eCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 656 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 656 G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
|++|.+.+ ....++.+.+ +..+++++++++||....+ ....+.+.+.++++.++.
T Consensus 333 G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~~~E-~P~~f~~~l~~~~~~~~~ 387 (402)
T PLN02894 333 GRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFVFLD-NPSGFHSAVLYACRKYLS 387 (402)
T ss_pred eCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCeeecc-CHHHHHHHHHHHHHHhcc
Confidence 99998664 4444443333 3457899999999976544 455788899999888763
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-15 Score=148.04 Aligned_cols=206 Identities=17% Similarity=0.217 Sum_probs=124.2
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCce
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 561 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~ 561 (715)
|.||++||.+.. ...|...+..|+ .+|.|+++|+|| +|.+.. .....++++ ++.+.+.. .++
T Consensus 5 ~~iv~~HG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G---~G~s~~------~~~~~~~~~---~~~~~~~~---~~~ 66 (245)
T TIGR01738 5 VHLVLIHGWGMN--AEVFRCLDEELS-AHFTLHLVDLPG---HGRSRG------FGPLSLADA---AEAIAAQA---PDP 66 (245)
T ss_pred ceEEEEcCCCCc--hhhHHHHHHhhc-cCeEEEEecCCc---CccCCC------CCCcCHHHH---HHHHHHhC---CCC
Confidence 679999996544 456777777775 569999999999 554321 111234444 34444432 368
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC-CCC-------------Cce-eeec------cCCCCC
Q 005093 562 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-DIP-------------DWC-YVES------YGSKGK 620 (715)
Q Consensus 562 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~-~~~-------------~~~-~~~~------~~~~~~ 620 (715)
+.++|||+||.+++.++.++|++++++|++++...+....... ... .+. .... +.....
T Consensus 67 ~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (245)
T TIGR01738 67 AIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTA 146 (245)
T ss_pred eEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999887653221000000 000 000 0000 000000
Q ss_pred C--------CC--CCCCChhh----HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEe
Q 005093 621 D--------SF--TESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 686 (715)
Q Consensus 621 ~--------~~--~~~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (715)
. .+ ...+.... ...+...+....+.++++|+|+++|++|..+|++....+.+.+. .++++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~ 222 (245)
T TIGR01738 147 RQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYIF 222 (245)
T ss_pred chHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEEe
Confidence 0 00 00000000 00111122223467899999999999999999887766655543 4788999
Q ss_pred CCCCccCCCCCchHHHHHHHHHHH
Q 005093 687 PNDVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 687 ~~~~H~~~~~~~~~~~~~~i~~wl 710 (715)
+++||..... ...++.+.+.+|+
T Consensus 223 ~~~gH~~~~e-~p~~~~~~i~~fi 245 (245)
T TIGR01738 223 AKAAHAPFLS-HAEAFCALLVAFK 245 (245)
T ss_pred CCCCCCcccc-CHHHHHHHHHhhC
Confidence 9999987654 4557788888774
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=146.08 Aligned_cols=213 Identities=15% Similarity=0.217 Sum_probs=124.8
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.. ...|...+..|. ++|.|+++|+|| +|.+.. +.. .....++..+.+..+++.. +.+
T Consensus 34 ~~~iv~lHG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G---~G~S~~---~~~-~~~~~~~~~~~~~~~~~~~--~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPTW--SFLYRDIIVALR-DRFRCVAPDYLG---FGLSER---PSG-FGYQIDEHARVIGEFVDHL--GLD 101 (286)
T ss_pred CCEEEEECCCCcc--HHHHHHHHHHHh-CCcEEEEECCCC---CCCCCC---CCc-cccCHHHHHHHHHHHHHHh--CCC
Confidence 4789999996532 446766777775 469999999999 554421 111 1234678888888777763 457
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh---------hhccCCCCCCceee-eccCCCCCC-CCCCCCCh
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWCYV-ESYGSKGKD-SFTESPSV 629 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ 629 (715)
++.++||||||.+++.++..+|++++++|++++..... .............. ..+...... ........
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPAGTEHRPSS 181 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccccccCCCCH
Confidence 89999999999999999999999999999877643110 00000000000000 000000000 00000000
Q ss_pred hhHHHHH-----------------h---cCc-hhh----cc--CCCCcEEEEeeCCCCcCCchH-HHHHHHHHHHcCCcE
Q 005093 630 EDLTRFH-----------------S---KSP-ISH----IS--KVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVET 681 (715)
Q Consensus 630 ~~~~~~~-----------------~---~sp-~~~----~~--~i~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~g~~~ 681 (715)
.....+. . ..+ +.. +. .+++|+|+++|++|..+++.. ...+.+.+. ..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip----~~ 257 (286)
T PRK03204 182 AVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFP----DH 257 (286)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcC----CC
Confidence 0000000 0 000 001 11 127999999999999886553 344444443 47
Q ss_pred EEEEeCCCCccCCCCCchHHHHHHHHHHH
Q 005093 682 KVIVFPNDVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 682 ~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 710 (715)
++++++++||....+ ..+++.+.|.+||
T Consensus 258 ~~~~i~~aGH~~~~e-~Pe~~~~~i~~~~ 285 (286)
T PRK03204 258 VLVELPNAKHFIQED-APDRIAAAIIERF 285 (286)
T ss_pred eEEEcCCCccccccc-CHHHHHHHHHHhc
Confidence 888999999987654 4557788888886
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-14 Score=141.53 Aligned_cols=182 Identities=20% Similarity=0.222 Sum_probs=122.7
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccch
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~ 541 (715)
..++.+.++.|. ..+++|+||++||+... ...|...+..|+++||.|+++|++|..+. .....+
T Consensus 36 ~~~~p~~v~~P~---~~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i 99 (313)
T PLN00021 36 SPPKPLLVATPS---EAGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEI 99 (313)
T ss_pred CCCceEEEEeCC---CCCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCC-----------CchhhH
Confidence 346778899997 56789999999997654 44677788999999999999998873211 011235
Q ss_pred hhHHHHHHHHHHc--------CCCCCceEEEEEeChhHHHHHHHHhhCCC-----ceeEEEecCCcchhhhhccCCCCCC
Q 005093 542 NDVLTAIDHVIDM--------GLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPD 608 (715)
Q Consensus 542 ~d~~~~i~~l~~~--------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~~~~~~~~~~~~~~ 608 (715)
++..++++|+.+. ..+|.++++|+|||+||.+++.++..+++ ++++++++.|+....... ..
T Consensus 100 ~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~-~~---- 174 (313)
T PLN00021 100 KDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK-QT---- 174 (313)
T ss_pred HHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc-CC----
Confidence 6677777777652 23567899999999999999999988764 578889888875421000 00
Q ss_pred ceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCC-----cC----CchH-HHHHHHHHHHcC
Q 005093 609 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-----RV----PVSN-GLQYARALREKG 678 (715)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~-----~v----~~~~-~~~~~~~l~~~g 678 (715)
.+.. ....+ ..-.+..|+|++++..|. .+ |... ..+++++. +
T Consensus 175 -----------------~p~i------l~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~---~ 226 (313)
T PLN00021 175 -----------------PPPV------LTYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNEC---K 226 (313)
T ss_pred -----------------CCcc------cccCc--ccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhc---C
Confidence 0000 00111 112367999999999763 22 2322 25565554 3
Q ss_pred CcEEEEEeCCCCcc
Q 005093 679 VETKVIVFPNDVHG 692 (715)
Q Consensus 679 ~~~~~~~~~~~~H~ 692 (715)
.+..+.+.++++|.
T Consensus 227 ~~~~~~~~~~~gH~ 240 (313)
T PLN00021 227 APAVHFVAKDYGHM 240 (313)
T ss_pred CCeeeeeecCCCcc
Confidence 47888899999996
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-15 Score=145.96 Aligned_cols=207 Identities=20% Similarity=0.206 Sum_probs=124.5
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCce
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 561 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~ 561 (715)
|.||++||.+.+ ...|...+..|.+ .|.|+++|+|| +|.+.. + .....+++.+ .+.+. ..++
T Consensus 14 ~~ivllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~---~---~~~~~~~~~~---~l~~~---~~~~ 75 (256)
T PRK10349 14 VHLVLLHGWGLN--AEVWRCIDEELSS-HFTLHLVDLPG---FGRSRG---F---GALSLADMAE---AVLQQ---APDK 75 (256)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHhc-CCEEEEecCCC---CCCCCC---C---CCCCHHHHHH---HHHhc---CCCC
Confidence 469999996544 5578888888865 59999999999 555431 1 1123444433 34433 2478
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCC-Cc-------------eeeec------cCCCCC-
Q 005093 562 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP-DW-------------CYVES------YGSKGK- 620 (715)
Q Consensus 562 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~-~~-------------~~~~~------~~~~~~- 620 (715)
+.++||||||.+++.+|.++|++++++|++++.............. .+ ..... +.....
T Consensus 76 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
T PRK10349 76 AIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETAR 155 (256)
T ss_pred eEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchHH
Confidence 9999999999999999999999999999887642211000000000 00 00000 000000
Q ss_pred -------CCCCC--CCChh----hHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeC
Q 005093 621 -------DSFTE--SPSVE----DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 687 (715)
Q Consensus 621 -------~~~~~--~~~~~----~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (715)
..+.. .+... ....+...+....+.++++|+|+++|+.|..+|.+.+..+.+.+ ...++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i----~~~~~~~i~ 231 (256)
T PRK10349 156 QDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLW----PHSESYIFA 231 (256)
T ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhC----CCCeEEEeC
Confidence 00000 00000 00111222333457788999999999999999877665554444 347899999
Q ss_pred CCCccCCCCCchHHHHHHHHHHHH
Q 005093 688 NDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 688 ~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
++||....+ ....+.+.+.+|-.
T Consensus 232 ~~gH~~~~e-~p~~f~~~l~~~~~ 254 (256)
T PRK10349 232 KAAHAPFIS-HPAEFCHLLVALKQ 254 (256)
T ss_pred CCCCCcccc-CHHHHHHHHHHHhc
Confidence 999977654 44577777777643
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.6e-15 Score=136.71 Aligned_cols=201 Identities=18% Similarity=0.165 Sum_probs=135.2
Q ss_pred CCCceEEEEEEecCCCCCCCCC-cEEEEEcCCCCCCCCccchHH-------HHHHHhCCcEEEEEcCCCCCCCchhhhhc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCD-PLIVVLHGGPHSVSLSSYSKS-------LAFLSSVGYSLLIVNYRGSLGFGEEALQS 531 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~-P~vv~iHGg~~~~~~~~~~~~-------~~~la~~G~~vi~~d~rG~~~~g~~~~~~ 531 (715)
..|.++...+|.|+++.+.+++ |+|||+||++.... ...... +-..-+.++-|++|.|--. +..+
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~-dn~~~l~sg~gaiawa~pedqcfVlAPQy~~i--f~d~---- 241 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGS-DNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPI--FADS---- 241 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecCCCCCc-hhhhhhhcCccceeeecccCceEEEccccccc--cccc----
Confidence 3678899999999999999998 99999999765432 121111 1122344566777764321 1100
Q ss_pred CCCCCCccchhhHHHHHH-HHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCce
Q 005093 532 LPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC 610 (715)
Q Consensus 532 ~~~~~~~~~~~d~~~~i~-~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 610 (715)
.+..........++++ -|.+++.+|.+||+++|.|+||+.++.++.++|+.|++++++++--+-
T Consensus 242 --e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~------------- 306 (387)
T COG4099 242 --EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR------------- 306 (387)
T ss_pred --ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch-------------
Confidence 0111112345556665 667788899999999999999999999999999999999998874220
Q ss_pred eeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccC-CCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC-
Q 005093 611 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN- 688 (715)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~- 688 (715)
...+.. -+.|+.+.|+.+|+++|.+.++-.++.++..+.++++..|..
T Consensus 307 ------------------------------v~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~~g 356 (387)
T COG4099 307 ------------------------------VYLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFLEG 356 (387)
T ss_pred ------------------------------hhhhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhhhc
Confidence 001111 237999999999999999999999999998888887776652
Q ss_pred --CCccCCCCCchHHH--HHHHHHHHHH
Q 005093 689 --DVHGIERPQSDFES--FLNIGLWFKK 712 (715)
Q Consensus 689 --~~H~~~~~~~~~~~--~~~i~~wl~~ 712 (715)
..|+......+... ..++.+||-+
T Consensus 357 ~~~~eG~d~~g~w~atyn~~eaieWLl~ 384 (387)
T COG4099 357 TTVLEGVDHSGVWWATYNDAEAIEWLLK 384 (387)
T ss_pred cccccccCCCCcceeecCCHHHHHHHHh
Confidence 22333322222111 2357777643
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=151.14 Aligned_cols=221 Identities=20% Similarity=0.257 Sum_probs=126.0
Q ss_pred CcEEEEEcCCCCCCCCccch--HHHHHH-------HhCCcEEEEEcCCCCCCCchhhhhcCC--CCCCccchhhHHHHH-
Q 005093 481 DPLIVVLHGGPHSVSLSSYS--KSLAFL-------SSVGYSLLIVNYRGSLGFGEEALQSLP--GKVGSQDVNDVLTAI- 548 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~--~~~~~l-------a~~G~~vi~~d~rG~~~~g~~~~~~~~--~~~~~~~~~d~~~~i- 548 (715)
.|.||++||++.+. ..|. .....| ..++|.|+++|+|| ||.+...... .......++++.+.+
T Consensus 69 gpplvllHG~~~~~--~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~G---hG~S~~p~~~~~~~~~~~~~~~~a~~~~ 143 (360)
T PRK06489 69 DNAVLVLHGTGGSG--KSFLSPTFAGELFGPGQPLDASKYFIILPDGIG---HGKSSKPSDGLRAAFPRYDYDDMVEAQY 143 (360)
T ss_pred CCeEEEeCCCCCch--hhhccchhHHHhcCCCCcccccCCEEEEeCCCC---CCCCCCCCcCCCCCCCcccHHHHHHHHH
Confidence 57899999976542 2232 222222 25789999999999 5554311000 001123456666443
Q ss_pred HHHHHcCCCCCceEE-EEEeChhHHHHHHHHhhCCCceeEEEecCCcchh--------hhh-c-cCCCCCCc---eee--
Q 005093 549 DHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL--------ALM-V-GTTDIPDW---CYV-- 612 (715)
Q Consensus 549 ~~l~~~~~~d~~~i~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~--------~~~-~-~~~~~~~~---~~~-- 612 (715)
..+.+.- +.+++. |+||||||++++.++.++|++++++|++++.... ... . .......+ .+.
T Consensus 144 ~~l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (360)
T PRK06489 144 RLVTEGL--GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQ 221 (360)
T ss_pred HHHHHhc--CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 3344442 345674 8999999999999999999999999988764210 000 0 00000000 000
Q ss_pred e--------cc---CCCC-CCCCCCCCChh----h------------HHHH-------HhcCchhhccCCCCcEEEEeeC
Q 005093 613 E--------SY---GSKG-KDSFTESPSVE----D------------LTRF-------HSKSPISHISKVKTPTIFLLGA 657 (715)
Q Consensus 613 ~--------~~---~~~~-~~~~~~~~~~~----~------------~~~~-------~~~sp~~~~~~i~~P~Lii~G~ 657 (715)
. .+ .... .......+... . ...+ ...+....+.++++|+|+++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~ 301 (360)
T PRK06489 222 PPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSA 301 (360)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecC
Confidence 0 00 0000 00000000000 0 0000 1122334567899999999999
Q ss_pred CCCcCCchHH--HHHHHHHHHcCCcEEEEEeCCC----CccCCCCCchHHHHHHHHHHHHHhc
Q 005093 658 QDLRVPVSNG--LQYARALREKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 658 ~D~~v~~~~~--~~~~~~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+|..+|++.+ +.+.+.+. ..++++++++ ||... +....+.+.|.+||+..-
T Consensus 302 ~D~~~p~~~~~~~~la~~ip----~a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 302 DDERNPPETGVMEAALKRVK----HGRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred CCcccChhhHHHHHHHHhCc----CCeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhcc
Confidence 9999998765 45555543 4789999996 99875 466688889999998754
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-14 Score=124.18 Aligned_cols=189 Identities=18% Similarity=0.246 Sum_probs=130.6
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCC---CCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 463 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS---VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 463 ~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~---~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
-.+.+. +.|. .....|+.|.+|.-+.. +........+..|.++||.|+.+||||.+.+...| +.+..
T Consensus 14 G~le~~-~~~~---~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~f------D~GiG 83 (210)
T COG2945 14 GRLEGR-YEPA---KTPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEF------DNGIG 83 (210)
T ss_pred ccceec-cCCC---CCCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcc------cCCcc
Confidence 345544 3444 35678999999984432 22223344667789999999999999987766655 45556
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCC
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 619 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (715)
+.+|+.++++|+.++. -+..-..+.|+|+|+++++.+|.+.|+ ....++.+|.++..
T Consensus 84 E~~Da~aaldW~~~~h-p~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~~--------------------- 140 (210)
T COG2945 84 ELEDAAAALDWLQARH-PDSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINAY--------------------- 140 (210)
T ss_pred hHHHHHHHHHHHHhhC-CCchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCch---------------------
Confidence 7999999999999985 222334789999999999999998765 44455555544310
Q ss_pred CCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCch
Q 005093 620 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 699 (715)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 699 (715)
. ...+....+|.++++|+.|.++.+....+..+. .+.+++++++++|.|... .
T Consensus 141 --------------d------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~gK--l 193 (210)
T COG2945 141 --------------D------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFHGK--L 193 (210)
T ss_pred --------------h------hhhccCCCCCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceeccc--H
Confidence 0 011223457899999999988876655444333 567889999999977532 3
Q ss_pred HHHHHHHHHHHH
Q 005093 700 FESFLNIGLWFK 711 (715)
Q Consensus 700 ~~~~~~i~~wl~ 711 (715)
..+.+.+.+|+.
T Consensus 194 ~~l~~~i~~~l~ 205 (210)
T COG2945 194 IELRDTIADFLE 205 (210)
T ss_pred HHHHHHHHHHhh
Confidence 456777888883
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=150.15 Aligned_cols=223 Identities=14% Similarity=0.076 Sum_probs=126.5
Q ss_pred CCcEEEEEcCCCCCCCCccchHHH---HHHHhCCcEEEEEcCCCCCCCchhhhhcCC-CCCC-----ccc-hhhHHHHHH
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLP-GKVG-----SQD-VNDVLTAID 549 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~---~~la~~G~~vi~~d~rG~~~~g~~~~~~~~-~~~~-----~~~-~~d~~~~i~ 549 (715)
+.|+||++||+++... .+...+ ..|...+|.|+++|+|| +|.+...... ..+. ... .+|+.+...
T Consensus 40 ~~~~vll~~~~~~~~~--~~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (339)
T PRK07581 40 KDNAILYPTWYSGTHQ--DNEWLIGPGRALDPEKYFIIIPNMFG---NGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHR 114 (339)
T ss_pred CCCEEEEeCCCCCCcc--cchhhccCCCccCcCceEEEEecCCC---CCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHH
Confidence 4577888787554422 232222 35666789999999999 5554311100 0111 111 244444344
Q ss_pred HHHHcCCCCCce-EEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh------------hccCCCCC-Cce-----
Q 005093 550 HVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------------MVGTTDIP-DWC----- 610 (715)
Q Consensus 550 ~l~~~~~~d~~~-i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~------------~~~~~~~~-~~~----- 610 (715)
.+.+.- ..++ +.|+||||||++++.+|.++|++++++|++++...... +....... .+.
T Consensus 115 ~l~~~l--gi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 192 (339)
T PRK07581 115 LLTEKF--GIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPE 192 (339)
T ss_pred HHHHHh--CCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHH
Confidence 455432 3467 47899999999999999999999999998865432100 00000000 000
Q ss_pred --------------eeecc-CCCCCCC----------------CCCCCChhhHHH----HHh----------cCchhhcc
Q 005093 611 --------------YVESY-GSKGKDS----------------FTESPSVEDLTR----FHS----------KSPISHIS 645 (715)
Q Consensus 611 --------------~~~~~-~~~~~~~----------------~~~~~~~~~~~~----~~~----------~sp~~~~~ 645 (715)
+...+ ....... ............ +.. .+....+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~ 272 (339)
T PRK07581 193 RGLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALG 272 (339)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHh
Confidence 00000 0000000 000000000000 000 01223466
Q ss_pred CCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC-CCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 646 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 646 ~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
++++|+|+++|++|..+|+..+..+.+.+. ..+++++++ +||.....+. .++...|.+|+++++
T Consensus 273 ~I~~PtLvI~G~~D~~~p~~~~~~l~~~ip----~a~l~~i~~~~GH~~~~~~~-~~~~~~~~~~~~~~~ 337 (339)
T PRK07581 273 SITAKTFVMPISTDLYFPPEDCEAEAALIP----NAELRPIESIWGHLAGFGQN-PADIAFIDAALKELL 337 (339)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeEEEeCCCCCccccccCc-HHHHHHHHHHHHHHH
Confidence 789999999999999999888777766653 368889998 8997665444 477888999999876
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-14 Score=147.37 Aligned_cols=236 Identities=13% Similarity=0.169 Sum_probs=139.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCC---CCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccch
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPH---SVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~---~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~ 541 (715)
+..+.|.|... ...+.| ||++||-.. ......+...+..|+++||.|+++|++| +|.+.. .........
T Consensus 48 ~~l~~~~~~~~-~~~~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g---~g~s~~---~~~~~d~~~ 119 (350)
T TIGR01836 48 VVLYRYTPVKD-NTHKTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGY---PDRADR---YLTLDDYIN 119 (350)
T ss_pred EEEEEecCCCC-cCCCCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCC---CCHHHh---cCCHHHHHH
Confidence 33445666421 122334 888998321 1112234568889999999999999998 443221 111111112
Q ss_pred hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC-----------------
Q 005093 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT----------------- 604 (715)
Q Consensus 542 ~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~----------------- 604 (715)
.++.++++++.++. ..+++.++|||+||.+++.++..+|++++++|++++.+++.......
T Consensus 120 ~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (350)
T TIGR01836 120 GYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMG 197 (350)
T ss_pred HHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcC
Confidence 45778899988873 45789999999999999999999999999999999887643211000
Q ss_pred CCCCceee------ec-------c-------CCC-CCCC-------CCCCCC--hhhH----HHHHhcCc----------
Q 005093 605 DIPDWCYV------ES-------Y-------GSK-GKDS-------FTESPS--VEDL----TRFHSKSP---------- 640 (715)
Q Consensus 605 ~~~~~~~~------~~-------~-------~~~-~~~~-------~~~~~~--~~~~----~~~~~~sp---------- 640 (715)
.++.+... .. + ... .... +...+. .... +.+...+.
T Consensus 198 ~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~ 277 (350)
T TIGR01836 198 NIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGG 277 (350)
T ss_pred CCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECC
Confidence 00000000 00 0 000 0000 000000 0000 00000111
Q ss_pred -hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc-CC-CCCchHHHHHHHHHHHHHh
Q 005093 641 -ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG-IE-RPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 641 -~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~-~~-~~~~~~~~~~~i~~wl~~~ 713 (715)
...+.++++|+|+++|++|.++|+..+..+++.+.. .+++++++++ ||. +. ......+++..+.+||.++
T Consensus 278 ~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 278 RKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVSS--EDYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred EEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCC--CCeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHhC
Confidence 012456789999999999999999988888777643 4567888875 564 33 3334578999999999763
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-14 Score=148.00 Aligned_cols=245 Identities=15% Similarity=0.176 Sum_probs=138.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc---------cchHHH---HHHHhCCcEEEEEcCCCC--CCCch
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---------SYSKSL---AFLSSVGYSLLIVNYRGS--LGFGE 526 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~---------~~~~~~---~~la~~G~~vi~~d~rG~--~~~g~ 526 (715)
+|.+++...+-+.+ ....|.||++||.+.+.... .|...+ ..|...+|.|+++|+||. +..+.
T Consensus 14 ~~~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~ 90 (351)
T TIGR01392 14 SDVRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGP 90 (351)
T ss_pred CCceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCC
Confidence 45566655554421 12347899999955432111 233333 255578999999999992 22121
Q ss_pred hhhhcC----CCCCCccchhhHHHHHHHHHHcCCCCCce-EEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh-
Q 005093 527 EALQSL----PGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM- 600 (715)
Q Consensus 527 ~~~~~~----~~~~~~~~~~d~~~~i~~l~~~~~~d~~~-i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~- 600 (715)
+..... ..+.....++|+.+.+..+++.- ..++ +.|+||||||.+++.++.++|++++++|++++.......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 168 (351)
T TIGR01392 91 SSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAWC 168 (351)
T ss_pred CCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHHH
Confidence 110000 00111345677777776666653 3467 999999999999999999999999999998876431100
Q ss_pred -----------ccCCC-----C-----CCcee--ee-----ccCC-C-CCCCCCCC------C--------ChhhH----
Q 005093 601 -----------VGTTD-----I-----PDWCY--VE-----SYGS-K-GKDSFTES------P--------SVEDL---- 632 (715)
Q Consensus 601 -----------~~~~~-----~-----~~~~~--~~-----~~~~-~-~~~~~~~~------~--------~~~~~---- 632 (715)
..... . +.+.+ .. .+.. . ....+... + .....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (351)
T TIGR01392 169 IAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRYQ 248 (351)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHHH
Confidence 00000 0 00000 00 0000 0 00000000 0 00000
Q ss_pred -----------------HHHHhcCc-------hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEE-eC
Q 005093 633 -----------------TRFHSKSP-------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV-FP 687 (715)
Q Consensus 633 -----------------~~~~~~sp-------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~-~~ 687 (715)
..+...+. ...+.++++|+|+++|++|..+|+..++.+.+.+......++++. ++
T Consensus 249 ~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~ 328 (351)
T TIGR01392 249 GDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIES 328 (351)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCC
Confidence 00111111 235668899999999999999999999999998876544444444 46
Q ss_pred CCCccCCCCCchHHHHHHHHHHHH
Q 005093 688 NDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 688 ~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
++||.....+ ..++.+.+.+||+
T Consensus 329 ~~GH~~~le~-p~~~~~~l~~FL~ 351 (351)
T TIGR01392 329 PYGHDAFLVE-TDQVEELIRGFLR 351 (351)
T ss_pred CCCcchhhcC-HHHHHHHHHHHhC
Confidence 8999776543 4577788888864
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=141.79 Aligned_cols=215 Identities=19% Similarity=0.256 Sum_probs=127.0
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.+.||++||++.... .......+...+|.|+++|+|| +|.+... ........+++.+.+..+.+.. +.+
T Consensus 27 ~~~lvllHG~~~~~~---~~~~~~~~~~~~~~vi~~D~~G---~G~S~~~---~~~~~~~~~~~~~dl~~l~~~l--~~~ 95 (306)
T TIGR01249 27 GKPVVFLHGGPGSGT---DPGCRRFFDPETYRIVLFDQRG---CGKSTPH---ACLEENTTWDLVADIEKLREKL--GIK 95 (306)
T ss_pred CCEEEEECCCCCCCC---CHHHHhccCccCCEEEEECCCC---CCCCCCC---CCcccCCHHHHHHHHHHHHHHc--CCC
Confidence 456899999765532 1233344556789999999999 6655321 1111223566777777666653 446
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh------------h--------ccCCCCC-Cc-eee----ec
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------------M--------VGTTDIP-DW-CYV----ES 614 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~------------~--------~~~~~~~-~~-~~~----~~ 614 (715)
++.++||||||.+++.++.++|++++++|+.++...... . ....... .. .+. ..
T Consensus 96 ~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (306)
T TIGR01249 96 NWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGGASMIYPDAWQRFMDSIPENERNEQLVNAYHDR 175 (306)
T ss_pred CEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcchhhhCHHHHHHHhhhCChhhhhccHHHHHHHH
Confidence 899999999999999999999999999998876432100 0 0000000 00 000 00
Q ss_pred cCCCC--------------C-CCCCCCC--------ChhhHHHHHh----------cC-----chhhccCC-CCcEEEEe
Q 005093 615 YGSKG--------------K-DSFTESP--------SVEDLTRFHS----------KS-----PISHISKV-KTPTIFLL 655 (715)
Q Consensus 615 ~~~~~--------------~-~~~~~~~--------~~~~~~~~~~----------~s-----p~~~~~~i-~~P~Lii~ 655 (715)
+.... . ....... .......+.. .. -...+.++ ++|+|++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~ 255 (306)
T TIGR01249 176 LQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENHYFVNKGFLDVENFILDNISKIRNIPTYIVH 255 (306)
T ss_pred ccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHhHHHHhchhcCchHHHHhhhhccCCCeEEEe
Confidence 00000 0 0000000 0000000000 00 11234566 58999999
Q ss_pred eCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 656 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 656 G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
|+.|..+|+..+..+++.+. ..++++++++||....+ ...+.+.+|+..+|
T Consensus 256 g~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~----~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 256 GRYDLCCPLQSAWALHKAFP----EAELKVTNNAGHSAFDP----NNLAALVHALETYL 306 (306)
T ss_pred cCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCCCCCh----HHHHHHHHHHHHhC
Confidence 99999999988888777653 37788999999987533 45678888888765
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-15 Score=148.09 Aligned_cols=197 Identities=20% Similarity=0.298 Sum_probs=119.8
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEE
Q 005093 484 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 563 (715)
Q Consensus 484 vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~ 563 (715)
||++||.+.. ...|...+..| ++||.|+++|+|| +|.+.... .......++..+.+..+++.. ..+++.
T Consensus 1 vv~~hG~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G---~G~s~~~~---~~~~~~~~~~~~~l~~~l~~~--~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGS--SESWDPLAEAL-ARGYRVIAFDLPG---HGRSDPPP---DYSPYSIEDYAEDLAELLDAL--GIKKVI 69 (228)
T ss_dssp EEEE-STTTT--GGGGHHHHHHH-HTTSEEEEEECTT---STTSSSHS---SGSGGSHHHHHHHHHHHHHHT--TTSSEE
T ss_pred eEEECCCCCC--HHHHHHHHHHH-hCCCEEEEEecCC---cccccccc---ccCCcchhhhhhhhhhccccc--cccccc
Confidence 7999997655 46788888888 5899999999999 55443211 112234555555555555552 337899
Q ss_pred EEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc----C---CCCCCce--eeeccCCCCCCCCCCCCCh-----
Q 005093 564 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----T---TDIPDWC--YVESYGSKGKDSFTESPSV----- 629 (715)
Q Consensus 564 l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~----~---~~~~~~~--~~~~~~~~~~~~~~~~~~~----- 629 (715)
++|||+||.+++.++.++|++++++|+++|......... . .....+. ....+..............
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999875321110 0 0000000 0000000000000000000
Q ss_pred ---hhHHH-----HHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCC
Q 005093 630 ---EDLTR-----FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 695 (715)
Q Consensus 630 ---~~~~~-----~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 695 (715)
..... ....+....+.++++|+++++|++|..++.+....+.+.+ ..+++++++++||.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~~ 219 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKL----PNAELVVIPGAGHFLFL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHS----TTEEEEEETTSSSTHHH
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHC----CCCEEEEECCCCCccHH
Confidence 00000 1122333566788999999999999999855554444433 46899999999998653
|
... |
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=151.12 Aligned_cols=249 Identities=18% Similarity=0.198 Sum_probs=144.8
Q ss_pred CCCCceEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCcc----chHHHHHHHhCCcEEEEEcCCCCCC-CchhhhhcC
Q 005093 459 KGAQKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSS----YSKSLAFLSSVGYSLLIVNYRGSLG-FGEEALQSL 532 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~-~~~~~~P~vv~iHGg~~~~~~~~----~~~~~~~la~~G~~vi~~d~rG~~~-~g~~~~~~~ 532 (715)
..||..|...-+.+... ....+.|+|+++||......... ....+..|+++||.|+++|.||.+. +|.......
T Consensus 51 T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~~~~ 130 (395)
T PLN02872 51 TKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEK 130 (395)
T ss_pred CCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCCCcc
Confidence 34666665545433221 12234688999999654432211 1234556889999999999999542 222211111
Q ss_pred CC-----CCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC---ceeEEEecCCcchhhh-----
Q 005093 533 PG-----KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLAL----- 599 (715)
Q Consensus 533 ~~-----~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~~~~~~~~----- 599 (715)
.. .+......|+.++++++.+.. .+++.++|||+||.+++.++ .+|+ +++++++++|+..+..
T Consensus 131 ~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~~~~~~~~ 206 (395)
T PLN02872 131 DKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYLDHVTAPL 206 (395)
T ss_pred chhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhhccCCCHH
Confidence 11 111222469999999998653 47899999999999998555 4676 5777777777643210
Q ss_pred -----------h---ccCCCC-CC-c--e-eee---------------ccCCCC--------------------------
Q 005093 600 -----------M---VGTTDI-PD-W--C-YVE---------------SYGSKG-------------------------- 619 (715)
Q Consensus 600 -----------~---~~~~~~-~~-~--~-~~~---------------~~~~~~-------------------------- 619 (715)
+ .+.... +. . . ... ..+...
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~pagtS~k~~~H~ 286 (395)
T PLN02872 207 VLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYEPHPSSVKNLRHL 286 (395)
T ss_pred HHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcCCCcchHHHHHHH
Confidence 0 000000 00 0 0 000 000000
Q ss_pred -----CCCCCCCC--ChhhHHHHHhcC-chhhccCC--CCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCC
Q 005093 620 -----KDSFTESP--SVEDLTRFHSKS-PISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 689 (715)
Q Consensus 620 -----~~~~~~~~--~~~~~~~~~~~s-p~~~~~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (715)
...+.... ...+...|-... |...+.++ ++|+++++|++|..+++.....+.+.+.. ..+++.+++.
T Consensus 287 ~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~---~~~l~~l~~~ 363 (395)
T PLN02872 287 FQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPS---KPELLYLENY 363 (395)
T ss_pred HHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCC---ccEEEEcCCC
Confidence 00000000 011222222223 33456777 47999999999999998888777777643 2577889999
Q ss_pred Ccc--CCCCCchHHHHHHHHHHHHHhc
Q 005093 690 VHG--IERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 690 ~H~--~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+|. +...+..+.+++.|++|+++++
T Consensus 364 gH~dfi~~~eape~V~~~Il~fL~~~~ 390 (395)
T PLN02872 364 GHIDFLLSTSAKEDVYNHMIQFFRSLG 390 (395)
T ss_pred CCHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 997 4456667789999999999875
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-14 Score=149.91 Aligned_cols=213 Identities=16% Similarity=0.230 Sum_probs=128.3
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
++.|.||++||.+.. ...|......|.+ +|.|+++|+|| +|.+.. ........++.+.+..+.+. ++
T Consensus 129 ~~~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g---~G~s~~-----~~~~~~~~~~~~~~~~~~~~--~~ 195 (371)
T PRK14875 129 GDGTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPG---HGASSK-----AVGAGSLDELAAAVLAFLDA--LG 195 (371)
T ss_pred CCCCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCC---CCCCCC-----CCCCCCHHHHHHHHHHHHHh--cC
Confidence 346789999995544 4566667777755 59999999999 444321 11123466777777666665 45
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh--------ccCCCCCCce--eeeccCCC-CCC------
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--------VGTTDIPDWC--YVESYGSK-GKD------ 621 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~-~~~------ 621 (715)
..+++++|||+||.+++.++.++|++++++++++|....... .......... ....+... ...
T Consensus 196 ~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (371)
T PRK14875 196 IERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVED 275 (371)
T ss_pred CccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHH
Confidence 678999999999999999999999999999998875321100 0000000000 00000000 000
Q ss_pred --CCCCCCC-hhhHHHHH---------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCC
Q 005093 622 --SFTESPS-VEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 689 (715)
Q Consensus 622 --~~~~~~~-~~~~~~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (715)
.+..... ......+. ..+....+.++++|+|+++|++|..+|...+..+. ..+++.+++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~~~~ 348 (371)
T PRK14875 276 LLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVLPGA 348 (371)
T ss_pred HHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEeCCC
Confidence 0000000 00000000 01122345678999999999999999877654332 24678899999
Q ss_pred CccCCCCCchHHHHHHHHHHHHH
Q 005093 690 VHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 690 ~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
||.....+ ...+.+.|.+||++
T Consensus 349 gH~~~~e~-p~~~~~~i~~fl~~ 370 (371)
T PRK14875 349 GHMPQMEA-AADVNRLLAEFLGK 370 (371)
T ss_pred CCChhhhC-HHHHHHHHHHHhcc
Confidence 99766544 45677788888865
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-14 Score=132.29 Aligned_cols=192 Identities=21% Similarity=0.165 Sum_probs=118.6
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCCCCchhhhh-cCCCCCCccch
Q 005093 466 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQ-SLPGKVGSQDV 541 (715)
Q Consensus 466 ~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~~~g~~~~~-~~~~~~~~~~~ 541 (715)
...+|.|++. +..+.|+||++||..... ..+.. +.+.-.++||+|+.|+-.........|.- ......+..+.
T Consensus 2 ~Y~lYvP~~~-~~~~~PLVv~LHG~~~~a--~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~ 78 (220)
T PF10503_consen 2 SYRLYVPPGA-PRGPVPLVVVLHGCGQSA--EDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDV 78 (220)
T ss_pred cEEEecCCCC-CCCCCCEEEEeCCCCCCH--HHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccch
Confidence 4568999865 335789999999966542 22222 22334578999999985432111222210 01112233456
Q ss_pred hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCC
Q 005093 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 621 (715)
Q Consensus 542 ~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (715)
..+.+.|+++..+..+|++||+++|+|.||.++..+++.+|++|+++..+++..-..... .... ...+..
T Consensus 79 ~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~---~~~a---~~~m~~---- 148 (220)
T PF10503_consen 79 AFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAAS---GASA---LSAMRS---- 148 (220)
T ss_pred hhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccC---cccH---HHHhhC----
Confidence 677788999999989999999999999999999999999999999999888764211000 0000 000000
Q ss_pred CCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHH
Q 005093 622 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 676 (715)
Q Consensus 622 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~ 676 (715)
...+...........+. ... ..|++++||+.|..|.+..+.++.+++..
T Consensus 149 --g~~~~p~~~~~a~~~~g--~~~--~~P~~v~hG~~D~tV~~~n~~~~~~q~~~ 197 (220)
T PF10503_consen 149 --GPRPAPAAAWGARSDAG--AYP--GYPRIVFHGTADTTVNPQNADQLVAQWLN 197 (220)
T ss_pred --CCCCChHHHHHhhhhcc--CCC--CCCEEEEecCCCCccCcchHHHHHHHHHH
Confidence 00000010001111110 111 25999999999999999999988888765
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.9e-14 Score=146.45 Aligned_cols=208 Identities=19% Similarity=0.195 Sum_probs=121.4
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchh----hHHHHHHHHHHcCC
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN----DVLTAIDHVIDMGL 556 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~----d~~~~i~~l~~~~~ 556 (715)
.|.||++||.+.. ...|...+..|+ ++|.|+++|++|. |.+... ....... ++.+.++.+
T Consensus 86 g~~vvliHG~~~~--~~~w~~~~~~l~-~~~~v~~~D~~G~---G~S~~~-----~~~~~~~~~a~~l~~~i~~~----- 149 (354)
T PLN02578 86 GLPIVLIHGFGAS--AFHWRYNIPELA-KKYKVYALDLLGF---GWSDKA-----LIEYDAMVWRDQVADFVKEV----- 149 (354)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCCC---CCCCCc-----ccccCHHHHHHHHHHHHHHh-----
Confidence 3568999995543 456666777775 4699999999994 443211 1112233 333333332
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC--------CCCCceeeecc-------------
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT--------DIPDWCYVESY------------- 615 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~------------- 615 (715)
..+++.++|||+||++++.+|.++|++++++|++++...+....... ..........+
T Consensus 150 -~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (354)
T PLN02578 150 -VKEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLF 228 (354)
T ss_pred -ccCCeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHH
Confidence 24689999999999999999999999999999887643211000000 00000000000
Q ss_pred -CCCC--------CCCCCC-----------------CCC-hhh-HH---HHH----hcCchhhccCCCCcEEEEeeCCCC
Q 005093 616 -GSKG--------KDSFTE-----------------SPS-VED-LT---RFH----SKSPISHISKVKTPTIFLLGAQDL 660 (715)
Q Consensus 616 -~~~~--------~~~~~~-----------------~~~-~~~-~~---~~~----~~sp~~~~~~i~~P~Lii~G~~D~ 660 (715)
.... ...+.. .+. ... .. .+. ..+....+.++++|+|+++|++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~ 308 (354)
T PLN02578 229 WQAKQPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDP 308 (354)
T ss_pred HHhcCHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCC
Confidence 0000 000000 000 000 00 000 111223467789999999999999
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 661 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 661 ~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
.+|...+.++.+.+. ..+++++ ++||....+ ...++.+.|.+|++
T Consensus 309 ~v~~~~~~~l~~~~p----~a~l~~i-~~GH~~~~e-~p~~~~~~I~~fl~ 353 (354)
T PLN02578 309 WVGPAKAEKIKAFYP----DTTLVNL-QAGHCPHDE-VPEQVNKALLEWLS 353 (354)
T ss_pred CCCHHHHHHHHHhCC----CCEEEEe-CCCCCcccc-CHHHHHHHHHHHHh
Confidence 999888777666553 3567777 589987644 44578899999985
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=132.53 Aligned_cols=221 Identities=17% Similarity=0.232 Sum_probs=131.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
...+.+|++||-+.+ ...|...+..|++ ...|.++|++| +|.+.+..++.+.... .....+.|+.-... ..
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG---~G~SSRP~F~~d~~~~-e~~fvesiE~WR~~--~~ 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLG---FGRSSRPKFSIDPTTA-EKEFVESIEQWRKK--MG 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccC---CCCCCCCCCCCCcccc-hHHHHHHHHHHHHH--cC
Confidence 455568999994332 3456667777777 89999999999 7777665554443322 23444555433333 23
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh----ccCCCCCCce-----------------eeeccCC
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM----VGTTDIPDWC-----------------YVESYGS 617 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~----~~~~~~~~~~-----------------~~~~~~~ 617 (715)
.++..|+|||+||+++..+|.++|++++-+|+++|+--.... ......+.|. .+..++.
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 479999999999999999999999999999999996432211 0001111111 0011111
Q ss_pred CCCC--------CCCCCCChhh-HHHHH----------------------hcCch-hhccCCC--CcEEEEeeCCCCcCC
Q 005093 618 KGKD--------SFTESPSVED-LTRFH----------------------SKSPI-SHISKVK--TPTIFLLGAQDLRVP 663 (715)
Q Consensus 618 ~~~~--------~~~~~~~~~~-~~~~~----------------------~~sp~-~~~~~i~--~P~Lii~G~~D~~v~ 663 (715)
.... .+......+. .+..+ ...|+ +.+..++ +|+++|+|++|.+ .
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWm-D 317 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWM-D 317 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCcccc-c
Confidence 0000 0000001111 01111 11222 2344455 9999999999965 3
Q ss_pred chHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 664 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 664 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
...+.++...+ ....++.+++|++||..... +.+.+.+.++.++++
T Consensus 318 ~~~g~~~~~~~--~~~~~~~~~v~~aGHhvylD-np~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 318 KNAGLEVTKSL--MKEYVEIIIVPGAGHHVYLD-NPEFFNQIVLEECDK 363 (365)
T ss_pred chhHHHHHHHh--hcccceEEEecCCCceeecC-CHHHHHHHHHHHHhc
Confidence 34455555554 33568899999999976644 445778888887765
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=127.07 Aligned_cols=188 Identities=16% Similarity=0.171 Sum_probs=128.5
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCC-CCCCcc----chhhHHHHHHHH
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-GKVGSQ----DVNDVLTAIDHV 551 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~-~~~~~~----~~~d~~~~i~~l 551 (715)
.....|+||++||.+.. ...+......+ .-.+.++.+.-+-.-..+..|..... ..+... ..+.+.++++.+
T Consensus 14 ~~p~~~~iilLHG~Ggd--e~~~~~~~~~~-~P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~ 90 (207)
T COG0400 14 GDPAAPLLILLHGLGGD--ELDLVPLPELI-LPNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEEL 90 (207)
T ss_pred CCCCCcEEEEEecCCCC--hhhhhhhhhhc-CCCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 45667899999995533 23333333322 33355555543222111222211111 111111 133455666666
Q ss_pred HHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhh
Q 005093 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 631 (715)
Q Consensus 552 ~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (715)
.++..++.+|+.++|+|.|+.+++.+..++|+.++++++.+|..-....
T Consensus 91 ~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~------------------------------- 139 (207)
T COG0400 91 AEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE------------------------------- 139 (207)
T ss_pred HHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc-------------------------------
Confidence 6777789999999999999999999999999999999999986521100
Q ss_pred HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 632 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 632 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
.....-.+|+|++||+.|++||...+.++.+.|+..|.+++...++ .||.+. .+.++.+.+|+.
T Consensus 140 ----------~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~ 203 (207)
T COG0400 140 ----------LLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLA 203 (207)
T ss_pred ----------cccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHH
Confidence 0001124799999999999999999999999999999999999998 799886 466788888998
Q ss_pred Hhc
Q 005093 712 KYC 714 (715)
Q Consensus 712 ~~l 714 (715)
..+
T Consensus 204 ~~~ 206 (207)
T COG0400 204 NTL 206 (207)
T ss_pred hcc
Confidence 764
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.1e-14 Score=137.89 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=120.2
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.+ ...|...+..| .+|.|+++|+|| +|.+... . ...+++..+.+..+++.. +.+
T Consensus 2 ~p~vvllHG~~~~--~~~w~~~~~~l--~~~~vi~~D~~G---~G~S~~~---~---~~~~~~~~~~l~~~l~~~--~~~ 66 (242)
T PRK11126 2 LPWLVFLHGLLGS--GQDWQPVGEAL--PDYPRLYIDLPG---HGGSAAI---S---VDGFADVSRLLSQTLQSY--NIL 66 (242)
T ss_pred CCEEEEECCCCCC--hHHHHHHHHHc--CCCCEEEecCCC---CCCCCCc---c---ccCHHHHHHHHHHHHHHc--CCC
Confidence 3679999997655 45777788877 379999999999 5554311 1 113555555554444442 357
Q ss_pred eEEEEEeChhHHHHHHHHhhCCC-ceeEEEecCCcchhhhh----ccCCCCCCce----------eeec-cCCCCCCCCC
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALM----VGTTDIPDWC----------YVES-YGSKGKDSFT 624 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~~~~~~~----~~~~~~~~~~----------~~~~-~~~~~~~~~~ 624 (715)
++.++||||||.+++.++.++|+ +++++++.++....... ........|. .... +.......+.
T Consensus 67 ~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (242)
T PRK11126 67 PYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFASLN 146 (242)
T ss_pred CeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhccC
Confidence 89999999999999999999866 49999987765321100 0000000000 0000 0000000000
Q ss_pred CCC-----------ChhhHHHHH-h------cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEe
Q 005093 625 ESP-----------SVEDLTRFH-S------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 686 (715)
Q Consensus 625 ~~~-----------~~~~~~~~~-~------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (715)
... .......+. . .+....+.++++|+|+++|++|..+. .+.+. ...+++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-----~~~~~~~i 216 (242)
T PRK11126 147 AEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-----LALPLHVI 216 (242)
T ss_pred ccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-----hcCeEEEe
Confidence 000 000000010 0 01123466889999999999998541 22221 14789999
Q ss_pred CCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 687 PNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 687 ~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+++||.+.. +..+.+.+.|.+||++
T Consensus 217 ~~~gH~~~~-e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 217 PNAGHNAHR-ENPAAFAASLAQILRL 241 (242)
T ss_pred CCCCCchhh-hChHHHHHHHHHHHhh
Confidence 999997664 4456788889999875
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-13 Score=130.04 Aligned_cols=218 Identities=12% Similarity=0.081 Sum_probs=130.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~--~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
....+.++++.|. ..++.|+||++||.+.... ...|...+..|+++||.|+++|+|| +|.+........+ .
T Consensus 8 ~~g~~~~~~~~p~---~~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G---~G~S~g~~~~~~~-~ 80 (266)
T TIGR03101 8 PHGFRFCLYHPPV---AVGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYG---CGDSAGDFAAARW-D 80 (266)
T ss_pred CCCcEEEEEecCC---CCCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCC---CCCCCCccccCCH-H
Confidence 3344667888776 3345799999999554322 2345567788999999999999999 4443211111111 1
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC----------CC-CC
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----------TD-IP 607 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~----------~~-~~ 607 (715)
...+|+.++++++.+.+ ..+|+|+||||||.+++.++.++|++++++|+.+|+.....+... .. ..
T Consensus 81 ~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~~~~~~~~~ 157 (266)
T TIGR03101 81 VWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVARRLGGES 157 (266)
T ss_pred HHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHHHHhccccc
Confidence 22578888999988763 478999999999999999999999999999999998764322110 00 00
Q ss_pred Cc---eeeeccCCCCCCCCCCCC-ChhhHHHHHhcCchhhccCCCCcEEEEeeCCCC-cCCchHHHHHHHHHHHcCCcEE
Q 005093 608 DW---CYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-RVPVSNGLQYARALREKGVETK 682 (715)
Q Consensus 608 ~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~-~v~~~~~~~~~~~l~~~g~~~~ 682 (715)
.. ...+.......-.+.+.. .......+...+....... ..++|++.-..+. .-......++.+++++.|+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~ 236 (266)
T TIGR03101 158 AEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NCPVHWFEVRPEEGATLSPVFSRLGEQWVQSGVEVT 236 (266)
T ss_pred cccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CCceEEEEeccccCCCCCHHHHHHHHHHHHcCCeEe
Confidence 00 000000000000011111 1122222222222111111 4567777654322 2223456788899999999999
Q ss_pred EEEeCCC
Q 005093 683 VIVFPND 689 (715)
Q Consensus 683 ~~~~~~~ 689 (715)
...|++.
T Consensus 237 ~~~~~~~ 243 (266)
T TIGR03101 237 VDLVPGP 243 (266)
T ss_pred eeecCCc
Confidence 9999987
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-13 Score=135.30 Aligned_cols=216 Identities=17% Similarity=0.181 Sum_probs=123.7
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
++..|.||++||.+.. ...|......|+++||.|+++|+|| +|.+... + .....+++..+.+..+++.. .
T Consensus 15 ~~~~p~vvliHG~~~~--~~~w~~~~~~L~~~g~~vi~~dl~g---~G~s~~~--~--~~~~~~~~~~~~l~~~i~~l-~ 84 (273)
T PLN02211 15 NRQPPHFVLIHGISGG--SWCWYKIRCLMENSGYKVTCIDLKS---AGIDQSD--A--DSVTTFDEYNKPLIDFLSSL-P 84 (273)
T ss_pred cCCCCeEEEECCCCCC--cCcHHHHHHHHHhCCCEEEEecccC---CCCCCCC--c--ccCCCHHHHHHHHHHHHHhc-C
Confidence 3456899999996655 4578888888988999999999999 5543210 1 11123555554444444432 1
Q ss_pred CCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh---hhcc-CCCCCCce----e-eeccCC--C---C----
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---LMVG-TTDIPDWC----Y-VESYGS--K---G---- 619 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~---~~~~-~~~~~~~~----~-~~~~~~--~---~---- 619 (715)
..+++.|+||||||.++..++.++|++++++|++++..... .... ....+.+. . ...+.. . .
T Consensus 85 ~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (273)
T PLN02211 85 ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTSAII 164 (273)
T ss_pred CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCceeee
Confidence 24789999999999999999999999999999987643210 0000 00000000 0 000000 0 0
Q ss_pred -----CCC-CCCCCChhhHHHH---Hhc---Cch------hhccCC-CCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCc
Q 005093 620 -----KDS-FTESPSVEDLTRF---HSK---SPI------SHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 680 (715)
Q Consensus 620 -----~~~-~~~~~~~~~~~~~---~~~---sp~------~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~ 680 (715)
... +...+ .+..... ... ..+ ....++ .+|+++|.|++|..+|++..+.+.+.+..
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~---- 239 (273)
T PLN02211 165 KKEFRRKILYQMSP-QEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPP---- 239 (273)
T ss_pred CHHHHHHHHhcCCC-HHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCc----
Confidence 000 00111 0111100 000 111 112234 68999999999999999888877766532
Q ss_pred EEEEEeCCCCccCCCCCchHHHHHHHHHHH
Q 005093 681 TKVIVFPNDVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 681 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 710 (715)
.+++.++ +||....... .++...|.+..
T Consensus 240 ~~~~~l~-~gH~p~ls~P-~~~~~~i~~~a 267 (273)
T PLN02211 240 SQVYELE-SDHSPFFSTP-FLLFGLLIKAA 267 (273)
T ss_pred cEEEEEC-CCCCccccCH-HHHHHHHHHHH
Confidence 3677886 7997654333 34555555443
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=145.35 Aligned_cols=231 Identities=15% Similarity=0.175 Sum_probs=136.3
Q ss_pred CCcEEEEEcCCCCCCCCc-----------cchHHH---HHHHhCCcEEEEEcCCCC-CCC-chhhhhc---CC--CCCCc
Q 005093 480 CDPLIVVLHGGPHSVSLS-----------SYSKSL---AFLSSVGYSLLIVNYRGS-LGF-GEEALQS---LP--GKVGS 538 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~-----------~~~~~~---~~la~~G~~vi~~d~rG~-~~~-g~~~~~~---~~--~~~~~ 538 (715)
..|.||++||.+.+.... .|...+ ..+...+|.|+++|++|. ++. +.+.... .+ .....
T Consensus 47 ~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~ 126 (379)
T PRK00175 47 RSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPV 126 (379)
T ss_pred CCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCc
Confidence 368999999966543210 133333 134367899999999983 211 1111000 00 01113
Q ss_pred cchhhHHHHHHHHHHcCCCCCce-EEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh---------ccCCCCCC
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------VGTTDIPD 608 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~-i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~---------~~~~~~~~ 608 (715)
..++++.+.+..+++.- ..++ +.++||||||.+++.++.++|++++++|++++....... ........
T Consensus 127 ~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~i~~~~~ 204 (379)
T PRK00175 127 ITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQNIAFNEVARQAILADPD 204 (379)
T ss_pred CCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHHHHHHHHHHHHHHHhCCC
Confidence 45777777777666653 3466 589999999999999999999999999998865421100 00000000
Q ss_pred ce-------------------------------eeeccCCCCCCCC---CCC--CChhhH--------------------
Q 005093 609 WC-------------------------------YVESYGSKGKDSF---TES--PSVEDL-------------------- 632 (715)
Q Consensus 609 ~~-------------------------------~~~~~~~~~~~~~---~~~--~~~~~~-------------------- 632 (715)
|. +...+........ ... ......
T Consensus 205 ~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~ 284 (379)
T PRK00175 205 WHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRYQGDKFVERFDANSYLYL 284 (379)
T ss_pred CCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHHHHHHHhhccCchHHHHH
Confidence 00 0000000000000 000 000000
Q ss_pred -HHHHhcC--------chhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeC-CCCccCCCCCchHHH
Q 005093 633 -TRFHSKS--------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP-NDVHGIERPQSDFES 702 (715)
Q Consensus 633 -~~~~~~s--------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~ 702 (715)
..+...+ -...+.+|++|+|+++|+.|..+|++.++.+.+.+...+..+++++++ ++||.....+. .++
T Consensus 285 ~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p-~~~ 363 (379)
T PRK00175 285 TRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFLLDD-PRY 363 (379)
T ss_pred HHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCH-HHH
Confidence 0000111 123457889999999999999999999999999998876677888775 89998765444 478
Q ss_pred HHHHHHHHHHh
Q 005093 703 FLNIGLWFKKY 713 (715)
Q Consensus 703 ~~~i~~wl~~~ 713 (715)
.+.+.+||++.
T Consensus 364 ~~~L~~FL~~~ 374 (379)
T PRK00175 364 GRLVRAFLERA 374 (379)
T ss_pred HHHHHHHHHhh
Confidence 88999999763
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=143.27 Aligned_cols=217 Identities=19% Similarity=0.196 Sum_probs=130.0
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
..|.||++||.+.. ...|...+..|+ .+|.|+++|++| +|.+...... ......++++.+.+..+++.- ..
T Consensus 126 ~~~~ivllHG~~~~--~~~w~~~~~~L~-~~~~Via~DlpG---~G~S~~p~~~-~~~~ys~~~~a~~l~~~i~~l--~~ 196 (383)
T PLN03084 126 NNPPVLLIHGFPSQ--AYSYRKVLPVLS-KNYHAIAFDWLG---FGFSDKPQPG-YGFNYTLDEYVSSLESLIDEL--KS 196 (383)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCC---CCCCCCCccc-ccccCCHHHHHHHHHHHHHHh--CC
Confidence 45789999996654 457777888886 489999999999 6654321100 011234666666666655552 34
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh--hcc----CCC--CCCcee----------eeccCCC---
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MVG----TTD--IPDWCY----------VESYGSK--- 618 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~--~~~----~~~--~~~~~~----------~~~~~~~--- 618 (715)
+++.|+|||+||.+++.++.++|++++++|+++|...... ... ... ...+.. .......
T Consensus 197 ~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (383)
T PLN03084 197 DKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLRASDKALTSCGPYAMK 276 (383)
T ss_pred CCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHHHHhhhhcccCccCCC
Confidence 6899999999999999999999999999999998642110 000 000 000000 0000000
Q ss_pred --C----CCCCCCCCC-hhhHH-HHHhc--Cc------hh---hccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCC
Q 005093 619 --G----KDSFTESPS-VEDLT-RFHSK--SP------IS---HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 679 (715)
Q Consensus 619 --~----~~~~~~~~~-~~~~~-~~~~~--sp------~~---~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~ 679 (715)
. ...+..... ..... .+... .. +. ...++++|+|+++|+.|..++.+.+.++.+..
T Consensus 277 ~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~~----- 351 (383)
T PLN03084 277 EDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYDGVEDFCKSS----- 351 (383)
T ss_pred HHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----
Confidence 0 000000000 00000 00000 00 00 01357899999999999999887766655542
Q ss_pred cEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 680 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 680 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
..++++++++||.... +..+++.+.|.+|+.
T Consensus 352 ~a~l~vIp~aGH~~~~-E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 352 QHKLIELPMAGHHVQE-DCGEELGGIISGILS 382 (383)
T ss_pred CCeEEEECCCCCCcch-hCHHHHHHHHHHHhh
Confidence 4678899999997664 455688888988886
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-13 Score=120.07 Aligned_cols=210 Identities=15% Similarity=0.160 Sum_probs=130.7
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
.+...++|++||.-...........+..+++.||.++.+|++|.++...++. ++++ ...++|+..+++++....
T Consensus 30 tgs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~---~Gn~-~~eadDL~sV~q~~s~~n-- 103 (269)
T KOG4667|consen 30 TGSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFY---YGNY-NTEADDLHSVIQYFSNSN-- 103 (269)
T ss_pred cCCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccc---cCcc-cchHHHHHHHHHHhccCc--
Confidence 3456789999995444333334456778999999999999999666555542 3333 334689999999986632
Q ss_pred CCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC---CCCCceeeeccCCCC--CCCCCCCCChhhH
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DIPDWCYVESYGSKG--KDSFTESPSVEDL 632 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 632 (715)
..--+|+|||-||.+++.++.++.+ +.-+|.+++-++........ +...|....-+-... ...+......+..
T Consensus 104 -r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSl 181 (269)
T KOG4667|consen 104 -RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESL 181 (269)
T ss_pred -eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHH
Confidence 1123589999999999999999877 77778888877654333110 100110000000000 0000000001111
Q ss_pred HHHHhcCchhhcc--CCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCch
Q 005093 633 TRFHSKSPISHIS--KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 699 (715)
Q Consensus 633 ~~~~~~sp~~~~~--~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 699 (715)
......+...... ..+||+|-+||..|.+||.+.+.++++.+.. .++.+++|++|.+...+..
T Consensus 182 mdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n----H~L~iIEgADHnyt~~q~~ 246 (269)
T KOG4667|consen 182 MDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN----HKLEIIEGADHNYTGHQSQ 246 (269)
T ss_pred HHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC----CceEEecCCCcCccchhhh
Confidence 1111111111122 2359999999999999999999999998865 7799999999999865543
|
|
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=142.60 Aligned_cols=214 Identities=16% Similarity=0.162 Sum_probs=108.8
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---------------Cc-cchHHHHHHHhCCcEEEEEcCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---------------LS-SYSKSLAFLSSVGYSLLIVNYR 519 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~---------------~~-~~~~~~~~la~~G~~vi~~d~r 519 (715)
.|...++..+.++++.|++. .++.|+||++||-+.... .. .-......|+++||+|+++|.+
T Consensus 92 ~f~~~p~~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~ 169 (390)
T PF12715_consen 92 EFNTTPGSRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDAL 169 (390)
T ss_dssp EE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--T
T ss_pred EEEccCCeeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccc
Confidence 45566788999999999853 788999999999321110 00 0112467899999999999998
Q ss_pred CCCCCchhhhh----------------cCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC
Q 005093 520 GSLGFGEEALQ----------------SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 583 (715)
Q Consensus 520 G~~~~g~~~~~----------------~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 583 (715)
|-|+.+..... .+...+......|.+.+++||..++.+|++||+++|+||||+.++++++. .+
T Consensus 170 g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaAL-Dd 248 (390)
T PF12715_consen 170 GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAAL-DD 248 (390)
T ss_dssp TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--T
T ss_pred cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHc-ch
Confidence 84433221100 01111122234577789999999999999999999999999999999997 56
Q ss_pred ceeEEEecCCcchhhh---hccCCCCCCc-eeeec--cCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeC
Q 005093 584 KFVAAAARNPLCNLAL---MVGTTDIPDW-CYVES--YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 657 (715)
Q Consensus 584 ~~~~~v~~~~~~~~~~---~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~ 657 (715)
++++.|..+-++.+.. .....+.... .+... .....+. ...+.++......| .|+|++.|.
T Consensus 249 RIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~-----r~~D~PdIasliAP--------RPll~~nG~ 315 (390)
T PF12715_consen 249 RIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLW-----RYFDFPDIASLIAP--------RPLLFENGG 315 (390)
T ss_dssp T--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCC-----CC--HHHHHHTTTT--------S-EEESS-B
T ss_pred hhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHH-----hhCccHHHHHHhCC--------CcchhhcCC
Confidence 8888887766554321 1100000000 00000 0000000 11223333333333 699999999
Q ss_pred CCCcCCchHHHHHHHHHHHcCCcEEEEEeCC
Q 005093 658 QDLRVPVSNGLQYARALREKGVETKVIVFPN 688 (715)
Q Consensus 658 ~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (715)
.|..+|. .+..|+.+ .+..+++++.||.
T Consensus 316 ~Dklf~i--V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 316 KDKLFPI--VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp -HHHHHH--HHHHHHHT-T-GGGEEE---GG
T ss_pred cccccHH--HHHHHHhc-CCCcceEEeeccc
Confidence 9988754 33344332 2234678888876
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-13 Score=133.89 Aligned_cols=315 Identities=16% Similarity=0.153 Sum_probs=154.2
Q ss_pred cCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCccccee
Q 005093 25 KENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGIS 103 (715)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (715)
..+.+.+|||..+-...--.-..+.|++||++|+|.++.+ +..++|.|+ .+++.++||+.+... . -+..
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d-g~~nly~lDL~t~~i~QLTdg~g~~--------~-~g~~ 87 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD-GNRNLYLLDLATGEITQLTDGPGDN--------T-FGGF 87 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT-SS-EEEEEETTT-EEEE---SS-B---------T-TT-E
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC-CCcceEEEEcccCEEEECccCCCCC--------c-cceE
Confidence 4556778888776322111245578999999999998876 888999999 899999999865432 1 2677
Q ss_pred ecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcc---------------------cCCc---CcccCCc
Q 005093 104 WNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW---------------------EEDW---GETYAGK 159 (715)
Q Consensus 104 wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~---g~~~~~~ 159 (715)
+||+++.|+|+...... ..+.+...+..........|++...| .++| .+.+...
T Consensus 88 ~s~~~~~~~Yv~~~~~l--~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~ 165 (386)
T PF14583_consen 88 LSPDDRALYYVKNGRSL--RRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR 165 (386)
T ss_dssp E-TTSSEEEEEETTTEE--EEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred EecCCCeEEEEECCCeE--EEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence 99999999887532111 11111111110111111111110000 0122 2223333
Q ss_pred cCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 160 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 160 ~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
..+.|+.+|++||+.+.+ .....-...+.+||..... |.|+.. .. |. .-..+||.++.
T Consensus 166 p~~~i~~idl~tG~~~~v--~~~~~wlgH~~fsP~dp~l---i~fCHE-Gp-----w~---~Vd~RiW~i~~-------- 223 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVV--FEDTDWLGHVQFSPTDPTL---IMFCHE-GP-----WD---LVDQRIWTINT-------- 223 (386)
T ss_dssp --EEEEEEETTT--EEEE--EEESS-EEEEEEETTEEEE---EEEEE--S------TT---TSS-SEEEEET--------
T ss_pred CCceEEEEECCCCceeEE--EecCccccCcccCCCCCCE---EEEecc-CC-----cc---eeceEEEEEEc--------
Confidence 457899999999999988 5666677899999955551 666642 11 11 12347999996
Q ss_pred hhhhhccCCCCCCceecCCC--CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeee
Q 005093 240 ELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 317 (715)
Q Consensus 240 ~~~~~~~~~~~~~~~~lt~~--~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~ 317 (715)
++...+.+... ...+...-|+|||+.|+|.+.... ....-|+.+|+.+++.+.+..... -.
T Consensus 224 ---------dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~------~~~~~i~~~d~~t~~~~~~~~~p~-~~- 286 (386)
T PF14583_consen 224 ---------DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPG------GQDFWIAGYDPDTGERRRLMEMPW-CS- 286 (386)
T ss_dssp ---------TS---EESS---TTEEEEEEEE-TTSS-EEEEEEETT------T--EEEEEE-TTT--EEEEEEE-S-EE-
T ss_pred ---------CCCcceeeecCCCCcccccccccCCCCEEEEEeecCC------CCceEEEeeCCCCCCceEEEeCCc-ee-
Confidence 66666666543 224788999999999999887542 223458888888866543321110 00
Q ss_pred ceecCCCCCccccccCCCCCCccccCCCEEEEEeee-------------CCeeEEEEEECCCCcEEEecCCCC-------
Q 005093 318 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-------------GSSQVIISVNVSSGELLRITPAES------- 377 (715)
Q Consensus 318 ~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~-------------~~~~~l~~~d~~tg~~~~l~~~~~------- 377 (715)
-+.-++||+.++--..+ ....-||.+++.++....|.....
T Consensus 287 -------------------H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~ 347 (386)
T PF14583_consen 287 -------------------HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDG 347 (386)
T ss_dssp -------------------EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTT
T ss_pred -------------------eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecC
Confidence 01123455522111111 112368888998888776654321
Q ss_pred ----CceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 378 ----NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 378 ----~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
.+-.+.||||+++|+|.+.. ..++.||++++.
T Consensus 348 ~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 348 DRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp BSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred CCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 23446899999999987755 566889998864
|
|
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.2e-13 Score=132.29 Aligned_cols=242 Identities=17% Similarity=0.159 Sum_probs=151.0
Q ss_pred CCceEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 461 AQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~---~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
||..+..-.+.+.+- ......|+||++||-.+.+.......++..+.++||.|++++.||.++.--.. +.-+.
T Consensus 102 DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtT----pr~f~ 177 (409)
T KOG1838|consen 102 DGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTT----PRLFT 177 (409)
T ss_pred CCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCC----Cceee
Confidence 555555555545432 12357799999999666554444555677778999999999999965542221 22233
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCC---CceeEEEecCCcchh--hhhcc----------
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNL--ALMVG---------- 602 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~~~--~~~~~---------- 602 (715)
....+|+..+++++.++. ...++..+|.||||.+...++++.. .+.+|+++.+|+--. .....
T Consensus 178 ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~~~~~~~y~~ 255 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIETPLYRRFYNR 255 (409)
T ss_pred cCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhcccchHHHHH
Confidence 345789999999999985 4568999999999999998887643 355666666665421 00000
Q ss_pred -----------------CCCCCCceeee------ccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCC
Q 005093 603 -----------------TTDIPDWCYVE------SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 659 (715)
Q Consensus 603 -----------------~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D 659 (715)
..+..++.... .+.......+.+.+ .-.+.|...|+..++++|++|+|+|+..+|
T Consensus 256 ~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~--~~deYY~~aSs~~~v~~I~VP~L~ina~DD 333 (409)
T KOG1838|consen 256 ALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFK--SVDEYYKKASSSNYVDKIKVPLLCINAADD 333 (409)
T ss_pred HHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCC--cHHHHHhhcchhhhcccccccEEEEecCCC
Confidence 00000000000 00000011111222 234667788999999999999999999999
Q ss_pred CcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCC---chHHHHHH-HHHHHHHh
Q 005093 660 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ---SDFESFLN-IGLWFKKY 713 (715)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~-i~~wl~~~ 713 (715)
+++|.+ +...-+. ..+..+-+++-..+||--..+. +...++++ +.+||...
T Consensus 334 Pv~p~~-~ip~~~~--~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 334 PVVPEE-AIPIDDI--KSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred CCCCcc-cCCHHHH--hcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 999875 2222222 2355788888888999533222 44456666 78887653
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=121.35 Aligned_cols=172 Identities=22% Similarity=0.369 Sum_probs=125.2
Q ss_pred cchHHHHHHHhCCcEEEEEcCCCCCCCchh----hh-hcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHH
Q 005093 498 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEE----AL-QSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGF 572 (715)
Q Consensus 498 ~~~~~~~~la~~G~~vi~~d~rG~~~~g~~----~~-~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~ 572 (715)
.....+..+|..||.|++||+-....+..+ .. .-..+.-......++...++||..++ +..+|+++|++|||.
T Consensus 55 n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak 132 (242)
T KOG3043|consen 55 NTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAK 132 (242)
T ss_pred HHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecce
Confidence 345567788999999999996532111111 00 00111122334779999999999875 578999999999999
Q ss_pred HHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEE
Q 005093 573 LTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 652 (715)
Q Consensus 573 ~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~L 652 (715)
++..+....| +|.++++..|..- . ...+..+++|+|
T Consensus 133 ~vv~~~~~~~-~f~a~v~~hps~~-------------------------------d------------~~D~~~vk~Pil 168 (242)
T KOG3043|consen 133 VVVTLSAKDP-EFDAGVSFHPSFV-------------------------------D------------SADIANVKAPIL 168 (242)
T ss_pred EEEEeeccch-hheeeeEecCCcC-------------------------------C------------hhHHhcCCCCEE
Confidence 9988877765 7888887776421 0 122356789999
Q ss_pred EEeeCCCCcCCchHHHHHHHHHHHcCC-cEEEEEeCCCCccCCC-------C---CchHHHHHHHHHHHHHhcC
Q 005093 653 FLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHGIER-------P---QSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 653 ii~G~~D~~v~~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~~~~-------~---~~~~~~~~~i~~wl~~~l~ 715 (715)
++.++.|..+|+....++-+.+++... ..++.+|++.+|+|.. + ...++.++++++||++|++
T Consensus 169 fl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 169 FLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred EEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999998888888887533 3579999999999873 1 2235678899999999974
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-13 Score=130.36 Aligned_cols=174 Identities=21% Similarity=0.237 Sum_probs=97.3
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC-C----CCCCceeeecc
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-T----DIPDWCYVESY 615 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~-~----~~~~~~~~~~~ 615 (715)
++-+.++++||.+++.++.++|+|+|.|.||-+|+.+|..+| .++++|+.+|..-....... . ..+........
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 466789999999999999999999999999999999999988 79999998885432111000 0 00000000000
Q ss_pred C-CCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchH-HHHHHHHHHHcCCc--EEEEEeCCCCc
Q 005093 616 G-SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVE--TKVIVFPNDVH 691 (715)
Q Consensus 616 ~-~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~g~~--~~~~~~~~~~H 691 (715)
. ......+...........-......-.+.++++|+|++.|++|.+.|... +..+.++|++++.+ ++++.|+++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 0 00000000000000000000111123467889999999999999988654 45677788888765 88899999999
Q ss_pred cCCCC---------------------------CchHHHHHHHHHHHHHhcC
Q 005093 692 GIERP---------------------------QSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 692 ~~~~~---------------------------~~~~~~~~~i~~wl~~~l~ 715 (715)
.+..+ ...++.++.+++||+++|+
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76421 1346789999999999985
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-13 Score=135.33 Aligned_cols=220 Identities=19% Similarity=0.233 Sum_probs=133.8
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhC-CcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~-G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
...|.||++||.+. +...|...+..|... |+.|+++|+.| +|.... .+. -......+....+..+.....
T Consensus 56 ~~~~pvlllHGF~~--~~~~w~~~~~~L~~~~~~~v~aiDl~G---~g~~s~--~~~-~~~y~~~~~v~~i~~~~~~~~- 126 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGA--SSFSWRRVVPLLSKAKGLRVLAIDLPG---HGYSSP--LPR-GPLYTLRELVELIRRFVKEVF- 126 (326)
T ss_pred CCCCcEEEeccccC--CcccHhhhccccccccceEEEEEecCC---CCcCCC--CCC-CCceehhHHHHHHHHHHHhhc-
Confidence 56788999999444 356787777777554 69999999999 442211 111 111446666666655555432
Q ss_pred CCceEEEEEeChhHHHHHHHHhhCCCceeEEE---ecCCcchhhhhc------------cCC---------CCCCceeee
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA---ARNPLCNLALMV------------GTT---------DIPDWCYVE 613 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v---~~~~~~~~~~~~------------~~~---------~~~~~~~~~ 613 (715)
..++.++|||+||.+++.+|+.+|+.++.++ +.++........ ... .... .+..
T Consensus 127 -~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~ 204 (326)
T KOG1454|consen 127 -VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVR-LVSE 204 (326)
T ss_pred -CcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchh-heeH
Confidence 3559999999999999999999999999999 555433211000 000 0000 0000
Q ss_pred ccCCCCCCCCCC-CCChhhH--------------HH-------HH--hcCchhhccCCC-CcEEEEeeCCCCcCCchHHH
Q 005093 614 SYGSKGKDSFTE-SPSVEDL--------------TR-------FH--SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGL 668 (715)
Q Consensus 614 ~~~~~~~~~~~~-~~~~~~~--------------~~-------~~--~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~ 668 (715)
.+.......+.. ....+.. +. .. ...+...+.++. +|+||++|+.|+.+|.+.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~ 284 (326)
T KOG1454|consen 205 GLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAE 284 (326)
T ss_pred hhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHH
Confidence 000000000000 0000000 00 00 122334566676 99999999999999988666
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 669 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 669 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
.+.+.+ ..+++++++++||.... +..+.+.+.|..|+.++.
T Consensus 285 ~~~~~~----pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 285 ELKKKL----PNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARLR 325 (326)
T ss_pred HHHhhC----CCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHhc
Confidence 655554 45899999999997665 666789999999998763
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-13 Score=139.14 Aligned_cols=198 Identities=15% Similarity=0.128 Sum_probs=114.1
Q ss_pred chHHHH---HHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCce-EEEEEeChhHHHH
Q 005093 499 YSKSLA---FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLT 574 (715)
Q Consensus 499 ~~~~~~---~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~-i~l~G~S~GG~~a 574 (715)
|...+. .|...+|.|+++|+|| +|.+. ... ....+..+.+..+++.- +.++ +.|+||||||+++
T Consensus 85 w~~~v~~~~~L~~~~~~Vi~~Dl~G---~g~s~----~~~---~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA 152 (343)
T PRK08775 85 WEGLVGSGRALDPARFRLLAFDFIG---ADGSL----DVP---IDTADQADAIALLLDAL--GIARLHAFVGYSYGALVG 152 (343)
T ss_pred chhccCCCCccCccccEEEEEeCCC---CCCCC----CCC---CCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHH
Confidence 444554 4545679999999998 55442 111 12344444444444442 3345 5799999999999
Q ss_pred HHHHhhCCCceeEEEecCCcchhhh----hcc-------CC-C--CC-C------ceeeeccCC-C-CCCCCCCCC----
Q 005093 575 THLIGQAPDKFVAAAARNPLCNLAL----MVG-------TT-D--IP-D------WCYVESYGS-K-GKDSFTESP---- 627 (715)
Q Consensus 575 ~~~a~~~p~~~~~~v~~~~~~~~~~----~~~-------~~-~--~~-~------~~~~~~~~~-~-~~~~~~~~~---- 627 (715)
+.++.++|++++++|++++...... ... .. . .. . ......+.. . ....+....
T Consensus 153 ~~~A~~~P~~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
T PRK08775 153 LQFASRHPARVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVIN 232 (343)
T ss_pred HHHHHHChHhhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccC
Confidence 9999999999999999987532110 000 00 0 00 0 000000000 0 000000000
Q ss_pred -----Chh-hH-----HHHHhcCc-------------hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEE
Q 005093 628 -----SVE-DL-----TRFHSKSP-------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 683 (715)
Q Consensus 628 -----~~~-~~-----~~~~~~sp-------------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 683 (715)
... .. ......++ ...+.++++|+|+++|+.|..+|+..+.++.+.+. ...++
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~---p~a~l 309 (343)
T PRK08775 233 GRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLG---PRGSL 309 (343)
T ss_pred CCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcC---CCCeE
Confidence 000 00 00000000 11256789999999999999999888777766653 23778
Q ss_pred EEeCC-CCccCCCCCchHHHHHHHHHHHHH
Q 005093 684 IVFPN-DVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 684 ~~~~~-~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+++++ +||....++ ...+.+.+.+||++
T Consensus 310 ~~i~~~aGH~~~lE~-Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 310 RVLRSPYGHDAFLKE-TDRIDAILTTALRS 338 (343)
T ss_pred EEEeCCccHHHHhcC-HHHHHHHHHHHHHh
Confidence 89985 999876554 45888889999975
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.8e-12 Score=153.14 Aligned_cols=224 Identities=17% Similarity=0.237 Sum_probs=132.6
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC-CC--CCCccchhhHHHHHHHHHHcCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-PG--KVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~-~~--~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
..|.||++||.+.+ ...|...+..|.+ +|.|+++|+|| ||.+..... .. ......++++.+.+..++++
T Consensus 1370 ~~~~vVllHG~~~s--~~~w~~~~~~L~~-~~rVi~~Dl~G---~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~-- 1441 (1655)
T PLN02980 1370 EGSVVLFLHGFLGT--GEDWIPIMKAISG-SARCISIDLPG---HGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH-- 1441 (1655)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhC-CCEEEEEcCCC---CCCCCCccccccccccccCCHHHHHHHHHHHHHH--
Confidence 45789999996655 4467777777754 69999999999 554432110 00 01122356666666555554
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc-----cCCCCC--Cc-------eeeecc-CCCCCC
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-----GTTDIP--DW-------CYVESY-GSKGKD 621 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~-----~~~~~~--~~-------~~~~~~-~~~~~~ 621 (715)
...+++.|+||||||.+++.++.++|++++++|++++...+.... ...... .. .+...+ ......
T Consensus 1442 l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 1521 (1655)
T PLN02980 1442 ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWK 1521 (1655)
T ss_pred hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhh
Confidence 245789999999999999999999999999999887643211000 000000 00 000000 000000
Q ss_pred CCCCCC-------------ChhhHH-HHHh------cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcC---
Q 005093 622 SFTESP-------------SVEDLT-RFHS------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG--- 678 (715)
Q Consensus 622 ~~~~~~-------------~~~~~~-~~~~------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g--- 678 (715)
.....+ ...... .+.. .+....+.++++|+|+++|++|..++ ..+.++.+.+.+..
T Consensus 1522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~ 1600 (1655)
T PLN02980 1522 SLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESG 1600 (1655)
T ss_pred hhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHcccccccc
Confidence 000000 000000 0000 11123467889999999999999775 55666666664420
Q ss_pred -----CcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 679 -----VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 679 -----~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
..+++++++++||....++ ...+.+.|.+||++.
T Consensus 1601 ~~~~~~~a~lvvI~~aGH~~~lE~-Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1601 NDKGKEIIEIVEIPNCGHAVHLEN-PLPVIRALRKFLTRL 1639 (1655)
T ss_pred ccccccceEEEEECCCCCchHHHC-HHHHHHHHHHHHHhc
Confidence 1268999999999876544 457888999999763
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-11 Score=114.98 Aligned_cols=177 Identities=19% Similarity=0.193 Sum_probs=119.2
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHH
Q 005093 467 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 546 (715)
Q Consensus 467 ~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~ 546 (715)
..++.|. ..+.+|+|||+||.. .....|...++.+|+.||+|+.+|+..... .....+++++.+
T Consensus 6 l~v~~P~---~~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~~~~ 69 (259)
T PF12740_consen 6 LLVYYPS---SAGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVASAAE 69 (259)
T ss_pred eEEEecC---CCCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHHHHH
Confidence 3578898 678899999999954 223457888999999999999999654221 112234778888
Q ss_pred HHHHHHHcC--------CCCCceEEEEEeChhHHHHHHHHhhC-----CCceeEEEecCCcchhhhhccCCCCCCceeee
Q 005093 547 AIDHVIDMG--------LANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 613 (715)
Q Consensus 547 ~i~~l~~~~--------~~d~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 613 (715)
.++|+.+.- .+|-++|+|+|||.||-+++.++..+ +.+|++++++.|+-.+...... .
T Consensus 70 vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~-~-------- 140 (259)
T PF12740_consen 70 VIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQT-E-------- 140 (259)
T ss_pred HHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCC-C--------
Confidence 899987731 25888999999999999999998876 4589999999998632211000 0
Q ss_pred ccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCC--------cC-Cch-HHHHHHHHHHHcCCcEEE
Q 005093 614 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL--------RV-PVS-NGLQYARALREKGVETKV 683 (715)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~--------~v-~~~-~~~~~~~~l~~~g~~~~~ 683 (715)
|. .....| ..-+...|+|++...-.. .| |.. +-.+|+++. ..+.-.
T Consensus 141 -------------P~------v~~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~---~~p~~~ 196 (259)
T PF12740_consen 141 -------------PP------VLTYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDEC---KPPSWH 196 (259)
T ss_pred -------------Cc------cccCcc--cccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhc---CCCEEE
Confidence 00 000001 111245899999766663 23 322 234566665 346777
Q ss_pred EEeCCCCcc
Q 005093 684 IVFPNDVHG 692 (715)
Q Consensus 684 ~~~~~~~H~ 692 (715)
++..+.||.
T Consensus 197 ~v~~~~GH~ 205 (259)
T PF12740_consen 197 FVAKDYGHM 205 (259)
T ss_pred EEeCCCCch
Confidence 788999995
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-10 Score=112.21 Aligned_cols=300 Identities=20% Similarity=0.277 Sum_probs=165.5
Q ss_pred CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 38 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 38 ~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
+..+-+.+...+|||+|++||--+ ......+|+-....++..+. +... |+..++|||||++||-.+.+
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGs-----GD~TvR~WD~~TeTp~~t~K-gH~~------WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGS-----GDTTVRLWDLDTETPLFTCK-GHKN------WVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecC-----CCceEEeeccCCCCcceeec-CCcc------EEEEEEECCCcchhhccccC
Confidence 444556688899999999998432 22445566322233444332 2222 44899999999999987655
Q ss_pred CCCCCCCccCCC-CCCCCCCcCCCCCCCCCcccCCc----Cccc-CCccCceEEEEEccCCceEeecCCCCCCccceEEE
Q 005093 118 PSPSKPTFSLGS-TKGGSSDKDCNSWKGQGDWEEDW----GETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW 191 (715)
Q Consensus 118 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~ 191 (715)
.... .|.... .+.+........|+..+.|.|-- ...+ ...+.+.+.+||+..|...... ......+.-+.|
T Consensus 179 g~I~--lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrw 255 (480)
T KOG0271|consen 179 GSIR--LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCVRW 255 (480)
T ss_pred CeEE--EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEEEE
Confidence 4322 333222 23445555667777777765521 1111 2233588999999887755441 333446777888
Q ss_pred ecCCCCCccEEEEEeecCccceeeeee-----eecCCce---EEEEecc-------------ccc-c----------hhh
Q 005093 192 APLNEGLHQYLVFVGWSSETRKLGIKY-----CYNRPCA---LYAVRVS-------------LYK-S----------EAS 239 (715)
Q Consensus 192 spdg~~~~~~i~~~~~~~~~~~~g~~~-----~~~~~~~---i~~~~~~-------------~~~-~----------~~~ 239 (715)
-- +. ++|++..+..-+ -|+. |-+..++ |-.+++. +.. + +-|
T Consensus 256 GG--~g----liySgS~DrtIk-vw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 256 GG--EG----LIYSGSQDRTIK-VWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred cC--Cc----eEEecCCCceEE-EEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 63 44 777764433111 0000 0000011 1111221 000 0 011
Q ss_pred hhhhhcc------------------CCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecC
Q 005093 240 ELELKES------------------SSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 301 (715)
Q Consensus 240 ~~~~~~~------------------~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~ 301 (715)
+.-.+.. ....+...++|.+..-+..+.|||||++||-.+.+. .+.+++..
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk-----------SVkLW~g~ 397 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK-----------SVKLWDGR 397 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc-----------ceeeeeCC
Confidence 1111100 111223445566666688999999999999888774 36677767
Q ss_pred CCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCCCCce
Q 005093 302 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFS 380 (715)
Q Consensus 302 ~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~~~~~ 380 (715)
+|+... .|.| +...++.++|+.|.+ |+++.+.+..-.+| ++.++++.. |......+.
T Consensus 398 tGk~la------------------sfRG-Hv~~VYqvawsaDsR-LlVS~SkDsTLKvw--~V~tkKl~~DLpGh~DEVf 455 (480)
T KOG0271|consen 398 TGKFLA------------------SFRG-HVAAVYQVAWSADSR-LLVSGSKDSTLKVW--DVRTKKLKQDLPGHADEVF 455 (480)
T ss_pred Ccchhh------------------hhhh-ccceeEEEEeccCcc-EEEEcCCCceEEEE--EeeeeeecccCCCCCceEE
Confidence 766421 1222 222456889999986 77777766544454 555666554 443444344
Q ss_pred eEEEeecCCEEE
Q 005093 381 WSLLTLDGDNII 392 (715)
Q Consensus 381 ~~~~s~~~~~l~ 392 (715)
...+++||+++.
T Consensus 456 ~vDwspDG~rV~ 467 (480)
T KOG0271|consen 456 AVDWSPDGQRVA 467 (480)
T ss_pred EEEecCCCceee
Confidence 457889988764
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.5e-12 Score=130.25 Aligned_cols=231 Identities=12% Similarity=0.086 Sum_probs=136.5
Q ss_pred CCCcEEEEEcCCCCCCCC----------ccch-HHH---HHHHhCCcEEEEEcCCCCCC-----Cchh---hhhcC----
Q 005093 479 SCDPLIVVLHGGPHSVSL----------SSYS-KSL---AFLSSVGYSLLIVNYRGSLG-----FGEE---ALQSL---- 532 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~----------~~~~-~~~---~~la~~G~~vi~~d~rG~~~-----~g~~---~~~~~---- 532 (715)
.+.++||++|+-...... ..|. .++ ..+--.-|-||++|..|++. +|.. ..+..
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 456999999993332100 1222 222 13445669999999998542 1211 11110
Q ss_pred -CCCCCccchhhHHHHHHHHHHcCCCCCceEE-EEEeChhHHHHHHHHhhCCCceeEEEecCCcchh--------hh-hc
Q 005093 533 -PGKVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL--------AL-MV 601 (715)
Q Consensus 533 -~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~--------~~-~~ 601 (715)
..+.....+.|+.+++..+++.- ..+++. ++||||||++++.++.++|++++.+|+++..... .. ..
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~l--gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~~~~~~~~~~~~~~~ 211 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKSL--GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQNDAWTSVNVLQNWA 211 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCCCChhHHHHHHHHHH
Confidence 01233356888888887777763 346775 9999999999999999999999999988653211 00 00
Q ss_pred -cCCCCCCce---e---------------------------eeccCCCCCCCC---CCCCChhhHHHHH-----------
Q 005093 602 -GTTDIPDWC---Y---------------------------VESYGSKGKDSF---TESPSVEDLTRFH----------- 636 (715)
Q Consensus 602 -~~~~~~~~~---~---------------------------~~~~~~~~~~~~---~~~~~~~~~~~~~----------- 636 (715)
....-+.|. | ...+........ .........+.|.
T Consensus 212 ~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~e~yl~~~~~~~~~~~ 291 (389)
T PRK06765 212 EAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSFEKEINKATYRRAELV 291 (389)
T ss_pred HHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhHHHHHHHHHHHhhhcc
Confidence 000000010 0 000000000000 0000000001110
Q ss_pred -------------hc-------CchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC-CCccCCC
Q 005093 637 -------------SK-------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVHGIER 695 (715)
Q Consensus 637 -------------~~-------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~ 695 (715)
.. +....+.++++|+|+++|+.|..+|++.++.+.+.+...+..++++++++ .||....
T Consensus 292 Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~l 371 (389)
T PRK06765 292 DANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGV 371 (389)
T ss_pred ChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhh
Confidence 01 22345668899999999999999999999999888876666789999986 8997664
Q ss_pred CCchHHHHHHHHHHHHH
Q 005093 696 PQSDFESFLNIGLWFKK 712 (715)
Q Consensus 696 ~~~~~~~~~~i~~wl~~ 712 (715)
. ...++.+.|.+||++
T Consensus 372 e-~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 372 F-DIHLFEKKIYEFLNR 387 (389)
T ss_pred c-CHHHHHHHHHHHHcc
Confidence 4 344788889999865
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-10 Score=115.34 Aligned_cols=273 Identities=14% Similarity=0.060 Sum_probs=152.6
Q ss_pred cceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccc
Q 005093 13 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHG 91 (715)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 91 (715)
.....++++|+.+... .+..... ......+|||||+.++.....+ ..++.++ .+++....+......
T Consensus 8 ~~d~~v~~~d~~t~~~--~~~~~~~-----~~~~~l~~~~dg~~l~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~-- 75 (300)
T TIGR03866 8 EKDNTISVIDTATLEV--TRTFPVG-----QRPRGITLSKDGKLLYVCASDS---DTIQVIDLATGEVIGTLPSGPDP-- 75 (300)
T ss_pred cCCCEEEEEECCCCce--EEEEECC-----CCCCceEECCCCCEEEEEECCC---CeEEEEECCCCcEEEeccCCCCc--
Confidence 3445677777755431 2111111 3356689999999876554322 2344444 444444333222222
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
..+.|+|||+.|+..... ...|++||+.+
T Consensus 76 --------~~~~~~~~g~~l~~~~~~-------------------------------------------~~~l~~~d~~~ 104 (300)
T TIGR03866 76 --------ELFALHPNGKILYIANED-------------------------------------------DNLVTVIDIET 104 (300)
T ss_pred --------cEEEECCCCCEEEEEcCC-------------------------------------------CCeEEEEECCC
Confidence 578999999977664221 15699999988
Q ss_pred CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC
Q 005093 172 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 251 (715)
Q Consensus 172 g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (715)
++.... .........+.|+|||+. +++.... ...++.+|+ .++
T Consensus 105 ~~~~~~--~~~~~~~~~~~~~~dg~~----l~~~~~~--------------~~~~~~~d~-----------------~~~ 147 (300)
T TIGR03866 105 RKVLAE--IPVGVEPEGMAVSPDGKI----VVNTSET--------------TNMAHFIDT-----------------KTY 147 (300)
T ss_pred CeEEeE--eeCCCCcceEEECCCCCE----EEEEecC--------------CCeEEEEeC-----------------CCC
Confidence 654332 222234567899999997 7765421 113555675 444
Q ss_pred CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC-CCcccceeeeeeceecCCCCCcccc
Q 005093 252 PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGL 330 (715)
Q Consensus 252 ~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~~~~g~ 330 (715)
+...............|+|||++|++.+..+ ..|+++|+.+++. ..++.... ...++
T Consensus 148 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------~~v~i~d~~~~~~~~~~~~~~~-----------~~~~~- 205 (300)
T TIGR03866 148 EIVDNVLVDQRPRFAEFTADGKELWVSSEIG----------GTVSVIDVATRKVIKKITFEIP-----------GVHPE- 205 (300)
T ss_pred eEEEEEEcCCCccEEEECCCCCEEEEEcCCC----------CEEEEEEcCcceeeeeeeeccc-----------ccccc-
Confidence 4322111222345689999999887665432 2488889887543 11111000 00000
Q ss_pred ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 331 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 331 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
......+.|++||+.+++.... ...+..+|+++++...............|++++..|+.... .-..|.+.++.
T Consensus 206 -~~~~~~i~~s~dg~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~i~v~d~~ 279 (300)
T TIGR03866 206 -AVQPVGIKLTKDGKTAFVALGP--ANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNG---VSNDVSVIDVA 279 (300)
T ss_pred -cCCccceEECCCCCEEEEEcCC--CCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcC---CCCeEEEEECC
Confidence 0012356789999977665432 24688889988887654332222344578899888765432 12247788876
Q ss_pred ccC
Q 005093 411 DKA 413 (715)
Q Consensus 411 ~~~ 413 (715)
+++
T Consensus 280 ~~~ 282 (300)
T TIGR03866 280 ALK 282 (300)
T ss_pred CCc
Confidence 543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-11 Score=113.76 Aligned_cols=130 Identities=22% Similarity=0.188 Sum_probs=93.3
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC-----
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL----- 532 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~----- 532 (715)
...|...++++|.|.+.. ...|+||++||+..+.... ....+-......||.|+.||- +...|....
T Consensus 41 ~~~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg-----~~~~wn~~~~~~~~ 113 (312)
T COG3509 41 DVNGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDG-----YDRAWNANGCGNWF 113 (312)
T ss_pred ccCCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCc-----cccccCCCcccccC
Confidence 346778889999998743 3349999999966543211 111222334578999999962 222221111
Q ss_pred ---CCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 533 ---PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 533 ---~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
...-+..++..+.+.++.|..+..+|+.||+|.|.|.||.|+..+++.+|+.|.++..+++..
T Consensus 114 ~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 114 GPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 112233457778899999999999999999999999999999999999999999998887754
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.7e-11 Score=123.78 Aligned_cols=196 Identities=15% Similarity=0.129 Sum_probs=123.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCC----cEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G----~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
-|.+...++|.|+++. .+++|+|+++||..+.... .....+..|.++| .+++++|.......... +..
T Consensus 190 Lg~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~~-~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~e----l~~-- 261 (411)
T PRK10439 190 LGNSRRVWIYTTGDAA-PEERPLAILLDGQFWAESM-PVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQE----LPC-- 261 (411)
T ss_pred cCCceEEEEEECCCCC-CCCCCEEEEEECHHhhhcC-CHHHHHHHHHHcCCCCceEEEEECCCCccccccc----CCc--
Confidence 4567888999999876 6789999999997654322 2334556666677 34678875321111100 111
Q ss_pred Cccchh-hH-HHHHHHHHHcCC--CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceee
Q 005093 537 GSQDVN-DV-LTAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 612 (715)
Q Consensus 537 ~~~~~~-d~-~~~i~~l~~~~~--~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 612 (715)
..... .+ .+.+-++.++.. .|+++.+|+|+||||+.|++++.++|++|.+++++||.+-+...
T Consensus 262 -~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~~------------ 328 (411)
T PRK10439 262 -NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPHR------------ 328 (411)
T ss_pred -hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCCc------------
Confidence 11111 12 133345555432 47789999999999999999999999999999999986421100
Q ss_pred eccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc
Q 005093 613 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692 (715)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 692 (715)
... ......+.+... ....-...++|-+|..|... ...+.++++.|+++|.++++.+++| ||.
T Consensus 329 --~~~---------~~~~l~~~l~~~----~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-GHd 391 (411)
T PRK10439 329 --GGQ---------QEGVLLEQLKAG----EVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-GHD 391 (411)
T ss_pred --cCC---------chhHHHHHHHhc----ccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-CcC
Confidence 000 000011111110 01112245888899998543 4667899999999999999999987 686
Q ss_pred CC
Q 005093 693 IE 694 (715)
Q Consensus 693 ~~ 694 (715)
..
T Consensus 392 ~~ 393 (411)
T PRK10439 392 AL 393 (411)
T ss_pred HH
Confidence 54
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=138.86 Aligned_cols=105 Identities=13% Similarity=0.217 Sum_probs=67.6
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
.+|.+++...+-+ ...|.||++||.+.. ...|...+..| ..||.|+++|+|| +|.+.... .....
T Consensus 10 ~~g~~l~~~~~g~------~~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G---~G~S~~~~---~~~~~ 74 (582)
T PRK05855 10 SDGVRLAVYEWGD------PDRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRG---AGRSSAPK---RTAAY 74 (582)
T ss_pred eCCEEEEEEEcCC------CCCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCC---CCCCCCCC---ccccc
Confidence 4677887655422 236889999996644 45677777878 6789999999999 55543211 11122
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhh
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 580 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 580 (715)
..++..+.+..+++.-.. ..++.|+||||||.+++.++..
T Consensus 75 ~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 75 TLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred CHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhC
Confidence 344444444444333111 2359999999999998877765
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.1e-12 Score=110.02 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=130.8
Q ss_pred CCCcEEEEEcCCCCCCCCccc-hHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~-~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
...|++||+|||.|..+.... ...+..+..+||.|+.++|--++. .......+.++...++|+.+.. -
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q----------~htL~qt~~~~~~gv~filk~~-~ 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ----------VHTLEQTMTQFTHGVNFILKYT-E 133 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc----------cccHHHHHHHHHHHHHHHHHhc-c
Confidence 467999999999987654432 235566779999999999876432 1233445788999999998864 2
Q ss_pred CCceEEEEEeChhHHHHHHHHhh-CCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHH
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 636 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (715)
..+++.+.|||.|+.+++.+.++ +..++.++++.++++++..+..+....+. +. ..+...
T Consensus 134 n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g~dl------gL-------------t~~~ae 194 (270)
T KOG4627|consen 134 NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESGNDL------GL-------------TERNAE 194 (270)
T ss_pred cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCcccccc------Cc-------------ccchhh
Confidence 34668888999999999988775 45589999999999998877554322111 10 001122
Q ss_pred hcCc-hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc
Q 005093 637 SKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692 (715)
Q Consensus 637 ~~sp-~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 692 (715)
..|| +.....++.|+|++.+.+|..--.+|.+.+...+++ ..+..|++.+|.
T Consensus 195 ~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~hy 247 (270)
T KOG4627|consen 195 SVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYDHY 247 (270)
T ss_pred hcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcchh
Confidence 2333 234566788999999999988778999999999887 667799999994
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-11 Score=125.35 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=101.4
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc---hHHH---HHHHhCCcEEEEEcCCCCCCCchhhhhcC
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY---SKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSL 532 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~---~~~~---~~la~~G~~vi~~d~rG~~~~g~~~~~~~ 532 (715)
-.||++|...+|+|+ ..++.|+++..+-.|.......+ .... ..++++||+|+..|.||++++...+.
T Consensus 26 MRDGvrL~~dIy~Pa---~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~--- 99 (563)
T COG2936 26 MRDGVRLAADIYRPA---GAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFD--- 99 (563)
T ss_pred ecCCeEEEEEEEccC---CCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccc---
Confidence 348999999999998 56899999999844443321111 1112 36899999999999999877655542
Q ss_pred CCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchh
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 597 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~ 597 (715)
.+...+.+|..+.|+|+.++++. ..+|+++|.|++|+..+++|+..|...|+++..++..+.
T Consensus 100 --~~~~~E~~Dg~D~I~Wia~QpWs-NG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~ 161 (563)
T COG2936 100 --PESSREAEDGYDTIEWLAKQPWS-NGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDR 161 (563)
T ss_pred --eeccccccchhHHHHHHHhCCcc-CCeeeeecccHHHHHHHHHHhcCCchheeeccccccccc
Confidence 12224688999999999999865 478999999999999999999999999999998887764
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-12 Score=126.99 Aligned_cols=218 Identities=17% Similarity=0.167 Sum_probs=125.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCC-CCCCCCccchHHHHHHHhCC----cEEEEEcCCCCCCCchhhhh------
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGG-PHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQ------ 530 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg-~~~~~~~~~~~~~~~la~~G----~~vi~~d~rG~~~~g~~~~~------ 530 (715)
|.++..++|+|+++...+++|+|+++||. .+.. .......+..+.+.| ..+++++..+.......+..
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~-~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~ 83 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFR-NGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSR 83 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHTTHHHH-HHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTC
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCCccccc-cchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccccccc
Confidence 56788899999998888999999999994 2110 001122333344443 45666665443311111110
Q ss_pred cCCCCCCccchhhHH--HHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh-hccCCCCC
Q 005093 531 SLPGKVGSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDIP 607 (715)
Q Consensus 531 ~~~~~~~~~~~~d~~--~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~-~~~~~~~~ 607 (715)
......+.....+.. +.+.++.++..+.+++.+|+|+||||+.|+.++.++|+.|.+++++||.++... +....
T Consensus 84 ~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~~--- 160 (251)
T PF00756_consen 84 RADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGPS--- 160 (251)
T ss_dssp BCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHHS---
T ss_pred ccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCcC---
Confidence 011111111223322 556677777666666699999999999999999999999999999999865431 10000
Q ss_pred CceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhh-----ccCCCCcEEEEeeCCCCcCCc----------hHHHHHHH
Q 005093 608 DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-----ISKVKTPTIFLLGAQDLRVPV----------SNGLQYAR 672 (715)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-----~~~i~~P~Lii~G~~D~~v~~----------~~~~~~~~ 672 (715)
....+...++... ...-..++++..|+.|..... .....+.+
T Consensus 161 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~ 217 (251)
T PF00756_consen 161 -----------------------DDEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQ 217 (251)
T ss_dssp -----------------------TCGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CcHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHH
Confidence 0011112222211 122346789999999984321 12223333
Q ss_pred HHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHH
Q 005093 673 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 673 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 710 (715)
.|+.++.+..+..++| +|.+.. ....+...+.||
T Consensus 218 ~l~~~g~~~~~~~~~G-~H~~~~---W~~~l~~~L~~~ 251 (251)
T PF00756_consen 218 LLKAKGIPHTYHVFPG-GHDWAY---WRRRLPDALPWM 251 (251)
T ss_dssp HCCCEECTTESEEEHS-ESSHHH---HHHHHHHHHHHH
T ss_pred HHHHcCCCceEEEecC-ccchhh---HHHHHHHHHhhC
Confidence 4445577888888884 675432 234455555554
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-12 Score=112.38 Aligned_cols=213 Identities=16% Similarity=0.164 Sum_probs=126.8
Q ss_pred EEEEEcCCCCCCCCccchHHHHHH-HhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc--chhhHHHHHHHHHHcCCCCC
Q 005093 483 LIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ--DVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 483 ~vv~iHGg~~~~~~~~~~~~~~~l-a~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~--~~~d~~~~i~~l~~~~~~d~ 559 (715)
.|+++.|.-++ ....|......+ ...-+.+++.|.|| ||.+-. +..-... -.+|...+++.+... +.
T Consensus 44 ~iLlipGalGs-~~tDf~pql~~l~k~l~~TivawDPpG---YG~SrP---P~Rkf~~~ff~~Da~~avdLM~aL---k~ 113 (277)
T KOG2984|consen 44 YILLIPGALGS-YKTDFPPQLLSLFKPLQVTIVAWDPPG---YGTSRP---PERKFEVQFFMKDAEYAVDLMEAL---KL 113 (277)
T ss_pred eeEeccccccc-ccccCCHHHHhcCCCCceEEEEECCCC---CCCCCC---CcccchHHHHHHhHHHHHHHHHHh---CC
Confidence 57777774433 244566555444 33349999999999 766531 1111111 145777777766654 56
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchh-----hhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHH
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-----ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 634 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (715)
+++.|+|+|-||..++.+|+++++.+..+|...+..-. ..+.+..+...|.-.. .......|........++.
T Consensus 114 ~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~--R~P~e~~Yg~e~f~~~wa~ 191 (277)
T KOG2984|consen 114 EPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARG--RQPYEDHYGPETFRTQWAA 191 (277)
T ss_pred CCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhh--cchHHHhcCHHHHHHHHHH
Confidence 89999999999999999999999988887776653311 1111222222232100 0000000000000011111
Q ss_pred HH-------hc----CchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHH
Q 005093 635 FH-------SK----SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 703 (715)
Q Consensus 635 ~~-------~~----sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 703 (715)
+- .. -....+.+++||+||+||++|+.|+-.+.--+...+ .-.++.++|.++|.+...-. +++.
T Consensus 192 wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~----~~a~~~~~peGkHn~hLrya-~eFn 266 (277)
T KOG2984|consen 192 WVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLK----SLAKVEIHPEGKHNFHLRYA-KEFN 266 (277)
T ss_pred HHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhc----ccceEEEccCCCcceeeech-HHHH
Confidence 11 00 012347889999999999999999876654333322 34788999999999875443 4788
Q ss_pred HHHHHHHHH
Q 005093 704 LNIGLWFKK 712 (715)
Q Consensus 704 ~~i~~wl~~ 712 (715)
..+++||++
T Consensus 267 klv~dFl~~ 275 (277)
T KOG2984|consen 267 KLVLDFLKS 275 (277)
T ss_pred HHHHHHHhc
Confidence 889999975
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-11 Score=125.69 Aligned_cols=124 Identities=14% Similarity=0.225 Sum_probs=81.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc---cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccch
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~---~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~ 541 (715)
++.+-|.|.. +....+.||++||........ .-..++.+|+++||.|+++|+||. |.+.. .........
T Consensus 174 ~eLi~Y~P~t--~~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgp---g~s~~---~~~~ddY~~ 245 (532)
T TIGR01838 174 FQLIQYEPTT--ETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNP---DASQA---DKTFDDYIR 245 (532)
T ss_pred EEEEEeCCCC--CcCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCC---Ccccc---cCChhhhHH
Confidence 4555666652 222345688999954332211 123578899999999999999984 33211 111222334
Q ss_pred hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHH----HHHhhC-CCceeEEEecCCcchhh
Q 005093 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT----HLIGQA-PDKFVAAAARNPLCNLA 598 (715)
Q Consensus 542 ~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~----~~a~~~-p~~~~~~v~~~~~~~~~ 598 (715)
+++.++++.+.+. .+.+++.++|||+||.+++ .+++.+ +++++++++++..+++.
T Consensus 246 ~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~ 305 (532)
T TIGR01838 246 DGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFS 305 (532)
T ss_pred HHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCC
Confidence 5688888888875 3568899999999999853 234454 77899999888777653
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.1e-09 Score=99.98 Aligned_cols=284 Identities=12% Similarity=0.113 Sum_probs=162.4
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCC-CCCCeEEEEe-cCCccEEEEecCcccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGS 92 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 92 (715)
...|+.+++++...+ ++.-.+..++++.+..+|+|+++.|.-+.+.+ .+..--|.++ ++|+.+.+-.....-+
T Consensus 15 s~gI~v~~ld~~~g~---l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~-- 89 (346)
T COG2706 15 SQGIYVFNLDTKTGE---LSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS-- 89 (346)
T ss_pred CCceEEEEEeCcccc---cchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--
Confidence 456777777755442 22233444568899999999999887665553 2444456666 5577766544322111
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCc---------c--CCCCCCCC----------CCcCCCCCCCCCcccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTF---------S--LGSTKGGS----------SDKDCNSWKGQGDWEED 151 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~---------~--~~~~~~~~----------~~~~~~~~~~~~~~~~~ 151 (715)
....++.++||++++...- .......+ . ....-.+. .......+.+++.+.+|
T Consensus 90 -----~p~yvsvd~~g~~vf~AnY-~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 90 -----PPCYVSVDEDGRFVFVANY-HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred -----CCeEEEECCCCCEEEEEEc-cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 1157899999987755321 11111000 0 00000001 11122334456667777
Q ss_pred cCcccCCccCceEEEEEccCCceEeec--CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEE
Q 005093 152 WGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 229 (715)
Q Consensus 152 ~g~~~~~~~~~~l~~~~~~~g~~~~l~--~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~ 229 (715)
.|+ ..|++++++.|.+...+ ..........+.|+|+|+ ++|...+ .++.|-++
T Consensus 164 LG~-------Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-----~aY~v~E-------------L~stV~v~ 218 (346)
T COG2706 164 LGT-------DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK-----YAYLVNE-------------LNSTVDVL 218 (346)
T ss_pred cCC-------ceEEEEEcccCccccccccccCCCCCcceEEEcCCCc-----EEEEEec-------------cCCEEEEE
Confidence 654 78888888888766553 123344677899999999 6776532 22233333
Q ss_pred ecccccchhhhhhhhccCCCCCCceecCC---------CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeec
Q 005093 230 RVSLYKSEASELELKESSSEDLPVVNLTE---------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 300 (715)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~lt~---------~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~ 300 (715)
..+ ...++.+.|.. ...+...+..||||++| |++++. ...-.+|.+|-
T Consensus 219 ~y~---------------~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL-YasNRg-------~dsI~~f~V~~ 275 (346)
T COG2706 219 EYN---------------PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL-YASNRG-------HDSIAVFSVDP 275 (346)
T ss_pred EEc---------------CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE-EEecCC-------CCeEEEEEEcC
Confidence 321 13455444322 23346778899999966 788884 12222444443
Q ss_pred CCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 005093 301 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 301 ~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
.++.. .+ +..+ ...+. .+..+.+.++|+.|++...+.+...+|++|.+||+...+..
T Consensus 276 ~~g~L-~~-------~~~~--~teg~-------~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 276 DGGKL-EL-------VGIT--PTEGQ-------FPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCCEE-EE-------EEEe--ccCCc-------CCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 33321 11 1100 01111 24677789999988888777888899999999999988765
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=103.88 Aligned_cols=215 Identities=14% Similarity=0.150 Sum_probs=130.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch---HHHHHHHhCCcEEEEEc--CCCCCCCchh--hh----
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVN--YRGSLGFGEE--AL---- 529 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~---~~~~~la~~G~~vi~~d--~rG~~~~g~~--~~---- 529 (715)
-+..+.--+|+|+.+..+++.|++.++-|-.... ..+. ..-+...++|++|+.|| .||..--|.+ |.
T Consensus 24 l~c~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT~--~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~G 101 (283)
T KOG3101|consen 24 LKCSMTFGVYLPPDAPRGKRCPVLFYLSGLTCTH--ENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQG 101 (283)
T ss_pred cccceEEEEecCCCcccCCcCceEEEecCCcccc--hhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCC
Confidence 3455666789998877788899999999955442 2232 23345578999999999 4664322221 10
Q ss_pred -----hcCCCCCCc--cchhhHHHHHHHHHH--cCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh
Q 005093 530 -----QSLPGKVGS--QDVNDVLTAIDHVID--MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 600 (715)
Q Consensus 530 -----~~~~~~~~~--~~~~d~~~~i~~l~~--~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 600 (715)
++....|.. .+.+-+...+-.++. ...+|+.+++|.||||||+-|+..+.++|.+++.+.+.+|+++....
T Consensus 102 AGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~c 181 (283)
T KOG3101|consen 102 AGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINC 181 (283)
T ss_pred ceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccC
Confidence 011111111 111122222222222 12378999999999999999999999999999999999999875422
Q ss_pred ccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchh---hccCCCCcEEEEeeCCCCcCCchHH--HHHHHHHH
Q 005093 601 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS---HISKVKTPTIFLLGAQDLRVPVSNG--LQYARALR 675 (715)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---~~~~i~~P~Lii~G~~D~~v~~~~~--~~~~~~l~ 675 (715)
.| +.+...-|.+ ++...|...++.. .......-+||-.|..|...+ ++. +.+.++.+
T Consensus 182 -------pW------GqKAf~gYLG----~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~ 243 (283)
T KOG3101|consen 182 -------PW------GQKAFTGYLG----DNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA-EQLLPENLLEACK 243 (283)
T ss_pred -------cc------hHHHhhcccC----CChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh-hhcChHHHHHHhh
Confidence 12 2222222222 2334444555543 344444569999999999875 221 22333333
Q ss_pred Hc-CCcEEEEEeCCCCccCCC
Q 005093 676 EK-GVETKVIVFPNDVHGIER 695 (715)
Q Consensus 676 ~~-g~~~~~~~~~~~~H~~~~ 695 (715)
.. ..++.+...+|-+|.+..
T Consensus 244 ~~~~~~v~~r~~~gyDHSYyf 264 (283)
T KOG3101|consen 244 ATWQAPVVFRLQEGYDHSYYF 264 (283)
T ss_pred ccccccEEEEeecCCCcceee
Confidence 22 357888889999998653
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=103.62 Aligned_cols=241 Identities=18% Similarity=0.182 Sum_probs=136.6
Q ss_pred ccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 457 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
....||..+.+..|... ++.+--+.+-|+... ....|...++.++++||.|+.+||||.++..........-.+
T Consensus 10 l~~~DG~~l~~~~~pA~-----~~~~g~~~va~a~Gv-~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~ 83 (281)
T COG4757 10 LPAPDGYSLPGQRFPAD-----GKASGRLVVAGATGV-GQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRY 83 (281)
T ss_pred cccCCCccCccccccCC-----CCCCCcEEecccCCc-chhHhHHHHHHhhccCceEEEEecccccCCCccccccCccch
Confidence 34457888888877432 233323334443333 245677888999999999999999996654333222222233
Q ss_pred CccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeE-EEecCCcchhhhhccC-CCCC---Ccee
Q 005093 537 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA-AAARNPLCNLALMVGT-TDIP---DWCY 611 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~-~v~~~~~~~~~~~~~~-~~~~---~~~~ 611 (715)
......|+.++++++.+.. ...+...+|||+||.+.-.+ .+++ ++.+ .+..++ ..+....+. .... -|..
T Consensus 84 ~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~-~~~~-k~~a~~vfG~g-agwsg~m~~~~~l~~~~l~~l 158 (281)
T COG4757 84 LDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLL-GQHP-KYAAFAVFGSG-AGWSGWMGLRERLGAVLLWNL 158 (281)
T ss_pred hhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccc-ccCc-ccceeeEeccc-cccccchhhhhcccceeeccc
Confidence 3334678999999998852 34678999999999977644 4456 3332 222221 111111100 0000 0000
Q ss_pred ee----ccCCCCCCCCCCC----CC--hhhHHHHHhc------Cch-----hhccCCCCcEEEEeeCCCCcCCchHHHHH
Q 005093 612 VE----SYGSKGKDSFTES----PS--VEDLTRFHSK------SPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQY 670 (715)
Q Consensus 612 ~~----~~~~~~~~~~~~~----~~--~~~~~~~~~~------sp~-----~~~~~i~~P~Lii~G~~D~~v~~~~~~~~ 670 (715)
.. .+.......+.+. |. ..++..+-++ +|. +....+.+|+..+...+|+.+|+.....+
T Consensus 159 v~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~As~d~f 238 (281)
T COG4757 159 VGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPASRDAF 238 (281)
T ss_pred cccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHHHHHHH
Confidence 00 0000000011111 11 2223333222 221 23456889999999999999999888888
Q ss_pred HHHHHHcCCcEEEEEeCCC----CccCCCCCchHHHHHHHHHHH
Q 005093 671 ARALREKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 671 ~~~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~wl 710 (715)
....++ .+.++..++.. ||.-...+..+..++++++||
T Consensus 239 ~~~y~n--Apl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 239 ASFYRN--APLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHhhhc--CcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 777755 45666677664 786444444467899999997
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-10 Score=133.23 Aligned_cols=234 Identities=15% Similarity=0.191 Sum_probs=131.1
Q ss_pred EEEEEEecCCCCC--CCCCcEEEEEcCCCCCCCCccchH-----HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 465 FEAIFVSSSHKKD--CSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 465 l~~~l~~P~~~~~--~~~~P~vv~iHGg~~~~~~~~~~~-----~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
++.+-|.|...+. ....|.||++||.+.. ...|.. .+..|+++||.|+++|+. .+. ... ......
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~--~~~~d~~~~~s~v~~L~~~g~~v~~~d~G-~~~--~~~---~~~~~~ 120 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMS--ADMWDVTRDDGAVGILHRAGLDPWVIDFG-SPD--KVE---GGMERN 120 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCC--ccceecCCcccHHHHHHHCCCEEEEEcCC-CCC--hhH---cCccCC
Confidence 4445666653211 2345789999996544 334443 378899999999999963 211 110 000011
Q ss_pred -ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-CCceeEEEecCCcchhhhhcc-------------
Q 005093 538 -SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVG------------- 602 (715)
Q Consensus 538 -~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~~~~~~~~------------- 602 (715)
...+..+.++++.+.+.. .+++.++||||||.+++.+++.+ +++++++++++...|+.....
T Consensus 121 l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~ 197 (994)
T PRK07868 121 LADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAAD 197 (994)
T ss_pred HHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccc
Confidence 011223344444444432 35799999999999998887644 558999988766654321100
Q ss_pred --------CCCCCCcee------------e-------eccCC-CCC------CCCC------CCCC---hhhHHHHHhcC
Q 005093 603 --------TTDIPDWCY------------V-------ESYGS-KGK------DSFT------ESPS---VEDLTRFHSKS 639 (715)
Q Consensus 603 --------~~~~~~~~~------------~-------~~~~~-~~~------~~~~------~~~~---~~~~~~~~~~s 639 (715)
....+.|.. . ..+.. ... ..+. ..+. .+....+...+
T Consensus 198 ~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n 277 (994)
T PRK07868 198 FMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHN 277 (994)
T ss_pred cchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhC
Confidence 000011100 0 00000 000 0000 0000 00111111111
Q ss_pred ch-----------hhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEE-EEeCCCCccC--CCCCchHHHHHH
Q 005093 640 PI-----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV-IVFPNDVHGI--ERPQSDFESFLN 705 (715)
Q Consensus 640 p~-----------~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~-~~~~~~~H~~--~~~~~~~~~~~~ 705 (715)
.+ ..+.++++|+|+++|++|.++|++.+..+.+.+.. .++ .+++++||.. .......+.+..
T Consensus 278 ~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~ 353 (994)
T PRK07868 278 RMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPT 353 (994)
T ss_pred cccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChH
Confidence 11 13678889999999999999999988888666532 444 5778999973 345566778999
Q ss_pred HHHHHHHh
Q 005093 706 IGLWFKKY 713 (715)
Q Consensus 706 i~~wl~~~ 713 (715)
+.+||.++
T Consensus 354 i~~wl~~~ 361 (994)
T PRK07868 354 VADWVKWL 361 (994)
T ss_pred HHHHHHHh
Confidence 99999875
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=101.54 Aligned_cols=118 Identities=25% Similarity=0.332 Sum_probs=90.6
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchh
Q 005093 463 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 542 (715)
Q Consensus 463 ~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 542 (715)
-+....++.|. ..+.+|+|+|+||. ......|...++.++.+||+|++|++-.... .-+..+++
T Consensus 31 pPkpLlI~tP~---~~G~yPVilF~HG~--~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~Ei~ 94 (307)
T PF07224_consen 31 PPKPLLIVTPS---EAGTYPVILFLHGF--NLYNSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDEIK 94 (307)
T ss_pred CCCCeEEecCC---cCCCccEEEEeech--hhhhHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHHHH
Confidence 34556788887 78899999999993 3335577888999999999999999754211 12334578
Q ss_pred hHHHHHHHHHHc--------CCCCCceEEEEEeChhHHHHHHHHhhCC-C-ceeEEEecCCcch
Q 005093 543 DVLTAIDHVIDM--------GLANPSKVTVVGGSHGGFLTTHLIGQAP-D-KFVAAAARNPLCN 596 (715)
Q Consensus 543 d~~~~i~~l~~~--------~~~d~~~i~l~G~S~GG~~a~~~a~~~p-~-~~~~~v~~~~~~~ 596 (715)
+..+.++||.+. -..+.++++++|||.||..|..+|..+. + .|.++|.+.|+..
T Consensus 95 ~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G 158 (307)
T PF07224_consen 95 SAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAG 158 (307)
T ss_pred HHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCC
Confidence 888999999764 1257789999999999999999988653 2 5888888888754
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.18 E-value=7e-10 Score=111.04 Aligned_cols=203 Identities=20% Similarity=0.256 Sum_probs=118.5
Q ss_pred HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHc-CCCCCceEEEEEeChhHHHHHHHHhh
Q 005093 502 SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQ 580 (715)
Q Consensus 502 ~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~ 580 (715)
.+..+.++||+|+++||.|- |..+.. .......+-|.+++.+.+... +.....+++++|+|.||..+++++..
T Consensus 18 ~l~~~L~~GyaVv~pDY~Gl---g~~y~~---~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 18 FLAAWLARGYAVVAPDYEGL---GTPYLN---GRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHHHCCCEEEecCCCCC---CCcccC---cHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 55677899999999999984 333311 111112233444444443332 21234789999999999999887754
Q ss_pred C----CCc---eeEEEecCCcchhhhhccCCCCCCce-e--------eeccCC---------------------------
Q 005093 581 A----PDK---FVAAAARNPLCNLALMVGTTDIPDWC-Y--------VESYGS--------------------------- 617 (715)
Q Consensus 581 ~----p~~---~~~~v~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~--------------------------- 617 (715)
. |++ +.++++.+|+.++..+....+...+. + ...+..
T Consensus 92 ~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~ 171 (290)
T PF03583_consen 92 APSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLAD 171 (290)
T ss_pred hHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHH
Confidence 3 554 78899988888765443322111000 0 000000
Q ss_pred ----CCCCCC--------CCCCC-h---hhHHHHHhcCc-hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcC-C
Q 005093 618 ----KGKDSF--------TESPS-V---EDLTRFHSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG-V 679 (715)
Q Consensus 618 ----~~~~~~--------~~~~~-~---~~~~~~~~~sp-~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g-~ 679 (715)
.....+ ..... . .....+...+. ...-..-+.|++|.||..|.++|+..+.++++++.++| .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 172 IVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGA 251 (290)
T ss_pred HHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCC
Confidence 000000 00000 0 00011111111 00111225799999999999999999999999999999 7
Q ss_pred cEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 680 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 680 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+++++.+++.+|..... ......++||...|
T Consensus 252 ~V~~~~~~~~~H~~~~~----~~~~~a~~Wl~~rf 282 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGAAF----ASAPDALAWLDDRF 282 (290)
T ss_pred CEEEEecCCCChhhhhh----cCcHHHHHHHHHHH
Confidence 99999999999965322 23456778887765
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.3e-09 Score=111.59 Aligned_cols=267 Identities=13% Similarity=0.080 Sum_probs=158.3
Q ss_pred eEEeeCCCCceEEEEecCCC-CCCeEEEEe-cCCccEE-EEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 46 SAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEK-EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~-~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
...++||||++|||..+.++ +...++.++ .+|+... .+..... ..+.|++||+.|+|.........
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-----------~~~~W~~d~~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-----------SSVSWSDDGKGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-----------EEEEECTTSSEEEEEECSTTTSS
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-----------ceEEEeCCCCEEEEEEeCccccc
Confidence 46788999999999876653 445677777 5663322 1111111 34999999999999875542110
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE--eecCC-CCCCccceEEEecCCCCCc
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGI-PKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--~l~~~-~~~~~~~~~~~spdg~~~~ 199 (715)
. ......+||.+.+.++... .+-.. ........+..|+||+.
T Consensus 196 -------------------------------~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~-- 240 (414)
T PF02897_consen 196 -------------------------------S--DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRY-- 240 (414)
T ss_dssp ----------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSE--
T ss_pred -------------------------------c--cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccE--
Confidence 0 0002378999999887644 33111 12221446788999997
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC-----CCceecCCCCcc-ccceeEcCCCC
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-----LPVVNLTESISS-AFFPRFSPDGK 273 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~lt~~~~~-~~~~~~spdg~ 273 (715)
|+....... ..+++|++++ .. ...+.+...... ....... |.
T Consensus 241 --l~i~~~~~~-----------~~s~v~~~d~-----------------~~~~~~~~~~~~l~~~~~~~~~~v~~~--~~ 288 (414)
T PF02897_consen 241 --LFISSSSGT-----------SESEVYLLDL-----------------DDGGSPDAKPKLLSPREDGVEYYVDHH--GD 288 (414)
T ss_dssp --EEEEEESSS-----------SEEEEEEEEC-----------------CCTTTSS-SEEEEEESSSS-EEEEEEE--TT
T ss_pred --EEEEEEccc-----------cCCeEEEEec-----------------cccCCCcCCcEEEeCCCCceEEEEEcc--CC
Confidence 666553221 1258999997 33 355666553333 2323332 77
Q ss_pred eEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee
Q 005093 274 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 353 (715)
Q Consensus 274 ~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~ 353 (715)
.+++.++.. .....|+.+++...... .... .++....+.. +. .+...++.|++....
T Consensus 289 ~~yi~Tn~~-------a~~~~l~~~~l~~~~~~----~~~~--~l~~~~~~~~--------l~--~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 289 RLYILTNDD-------APNGRLVAVDLADPSPA----EWWT--VLIPEDEDVS--------LE--DVSLFKDYLVLSYRE 345 (414)
T ss_dssp EEEEEE-TT--------TT-EEEEEETTSTSGG----GEEE--EEE--SSSEE--------EE--EEEEETTEEEEEEEE
T ss_pred EEEEeeCCC-------CCCcEEEEecccccccc----ccee--EEcCCCCcee--------EE--EEEEECCEEEEEEEE
Confidence 788888764 34568999998875531 0000 1111101000 11 134456689998899
Q ss_pred CCeeEEEEEECC-CCcEEEecCCCC-CceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 354 GSSQVIISVNVS-SGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 354 ~~~~~l~~~d~~-tg~~~~l~~~~~-~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
++..+|..+++. +.....+..... .+.......+++.+++..+++.+|+.+|.+++.+++
T Consensus 346 ~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 346 NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 999999999998 666666654432 222223345688999999999999999999998765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.1e-10 Score=101.46 Aligned_cols=183 Identities=16% Similarity=0.164 Sum_probs=104.9
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHhCCc--EEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 483 LIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 483 ~vv~iHGg~~~~~~~~~~~~~~~la~~G~--~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|+|+||-..+..+.......+++++.+. .+.+++++. ...+..+.+..+++.. .++
T Consensus 1 ~ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~ 59 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPE 59 (187)
T ss_pred CeEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCC
Confidence 38999995444333344455667777764 455555443 1445556666666653 344
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCc
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 640 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 640 (715)
.+.|+|.|+||+.|.+++.+++ +++ |+++|.+......... ++... ..+.+....-....+.....
T Consensus 60 ~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~----------iG~~~-~~~~~e~~~~~~~~~~~l~~ 125 (187)
T PF05728_consen 60 NVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDY----------IGEQT-NPYTGESYELTEEHIEELKA 125 (187)
T ss_pred CeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHh----------hCccc-cCCCCccceechHhhhhcce
Confidence 5999999999999999998875 444 8888887654332110 00000 00000000000111111111
Q ss_pred hhhc-cCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHH
Q 005093 641 ISHI-SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 641 ~~~~-~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 710 (715)
+... ..-..++++++++.|++++...+...++. +..++.+|++|.|.. ..+.+..|++|+
T Consensus 126 l~~~~~~~~~~~lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 126 LEVPYPTNPERYLVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred EeccccCCCccEEEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 1111 12235899999999999988665444332 344567888999874 346677888886
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-10 Score=109.63 Aligned_cols=223 Identities=15% Similarity=0.199 Sum_probs=85.8
Q ss_pred CCcEEEEEcCCCCCCC-CccchHHHHHHHhCCcEEEEEcCCCC-CCCchhhhhcCCCCCCccchhhHHHHHHHHHHcC--
Q 005093 480 CDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-- 555 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~-~~~~~~~~~~la~~G~~vi~~d~rG~-~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~-- 555 (715)
..-+||||-|-..... .+....+++.|...||.|+.+.++-+ .++|.... ..+++|+.++|+||+...
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhhcc
Confidence 4558999988332222 34455677788788999999998752 34554322 246899999999999973
Q ss_pred CCCCceEEEEEeChhHHHHHHHHhhCC-----CceeEEEecCCcchhhhhccCCCC-CCce----ee----------ecc
Q 005093 556 LANPSKVTVVGGSHGGFLTTHLIGQAP-----DKFVAAAARNPLCNLALMVGTTDI-PDWC----YV----------ESY 615 (715)
Q Consensus 556 ~~d~~~i~l~G~S~GG~~a~~~a~~~p-----~~~~~~v~~~~~~~~~~~~~~~~~-~~~~----~~----------~~~ 615 (715)
....++|+|+|||-|..-++.++.... ..+.++|+.+|+.|-..+...... .... .. ..+
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 125689999999999999999887642 579999999999875432211000 0000 00 000
Q ss_pred CCCCCCCCC-CCCChhhHHHHHhcCc----------------hhhccCCCCcEEEEeeCCCCcCCchHH-HHHHHHHHHc
Q 005093 616 GSKGKDSFT-ESPSVEDLTRFHSKSP----------------ISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREK 677 (715)
Q Consensus 616 ~~~~~~~~~-~~~~~~~~~~~~~~sp----------------~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~~~~l~~~ 677 (715)
.......+. ..| ......+...+| ...+.++..|+|++.+++|+.||...- ..+.++++.+
T Consensus 184 p~~~~~~~~~~~P-iTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a 262 (303)
T PF08538_consen 184 PREFTPLVFYDTP-ITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAA 262 (303)
T ss_dssp ----GGTTT-SS----HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT------------------
T ss_pred eccccccccCCCc-ccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceecccccccccccccccc
Confidence 000000011 111 111111111111 134667889999999999999986543 4466666554
Q ss_pred CCc----EEEEEeCCCCccCCCCCc---hHHHHHHHHHHHH
Q 005093 678 GVE----TKVIVFPNDVHGIERPQS---DFESFLNIGLWFK 711 (715)
Q Consensus 678 g~~----~~~~~~~~~~H~~~~~~~---~~~~~~~i~~wl~ 711 (715)
-.+ ....++||+.|.+..+.. .....+++..||+
T Consensus 263 ~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 263 TNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp -----------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccCC
Confidence 222 224589999999876443 2356666777764
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-09 Score=103.13 Aligned_cols=260 Identities=12% Similarity=0.059 Sum_probs=145.9
Q ss_pred CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 38 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 38 ~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
+......+...+||++|++||-.+.. .+..+|.+...+. .++...-.+.+..| ..+.||||.++|+-....
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD--~Taiiw~v~~d~~-~kl~~tlvgh~~~V------~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKD--STAIIWIVVYDVH-FKLKKTLVGHSQPV------SYIMWSPDDRYLLACGFD 290 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCC--ceEEEEEEecCcc-eeeeeeeecccCce------EEEEECCCCCeEEecCch
Confidence 33445678999999999999966443 4556676665444 22222112222233 799999999998765433
Q ss_pred CCCCCCCccCCCCCCCCCCcCC-CCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~ 196 (715)
.. ...|....+..-...+.. ..-.....|-||.-.-+.+....+++.||+++.....-.+ -..-.+.+++.++||+
T Consensus 291 e~--~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~g-vr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 291 EV--LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEG-VRDPKVHDLAITYDGK 367 (519)
T ss_pred Hh--eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccc-cccceeEEEEEcCCCc
Confidence 22 122222222111111111 1112244577774233345556899999998876443311 1112467889999999
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEE
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~ 276 (715)
. ++.+. .+..|..++. ++...+.+..+...+.+...|.||+.+.
T Consensus 368 ~----vl~v~---------------~d~~i~l~~~-----------------e~~~dr~lise~~~its~~iS~d~k~~L 411 (519)
T KOG0293|consen 368 Y----VLLVT---------------VDKKIRLYNR-----------------EARVDRGLISEEQPITSFSISKDGKLAL 411 (519)
T ss_pred E----EEEEe---------------cccceeeech-----------------hhhhhhccccccCceeEEEEcCCCcEEE
Confidence 8 77665 2236777775 5555555666677788999999998554
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCe
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 356 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~ 356 (715)
+.-.+ ..++++|+......+--.+. ..|.| +-..+|..-+..++++.++++
T Consensus 412 -vnL~~----------qei~LWDl~e~~lv~kY~Gh--------------kq~~f---iIrSCFgg~~~~fiaSGSED~- 462 (519)
T KOG0293|consen 412 -VNLQD----------QEIHLWDLEENKLVRKYFGH--------------KQGHF---IIRSCFGGGNDKFIASGSEDS- 462 (519)
T ss_pred -EEccc----------CeeEEeecchhhHHHHhhcc--------------cccce---EEEeccCCCCcceEEecCCCc-
Confidence 33222 34888888742211100000 00000 112344433334666666554
Q ss_pred eEEEEEECCCCcEEEecCC
Q 005093 357 QVIISVNVSSGELLRITPA 375 (715)
Q Consensus 357 ~~l~~~d~~tg~~~~l~~~ 375 (715)
.+|.++..+|+......+
T Consensus 463 -kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 463 -KVYIWHRISGKLLAVLSG 480 (519)
T ss_pred -eEEEEEccCCceeEeecC
Confidence 677778888876655443
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-11 Score=119.77 Aligned_cols=174 Identities=17% Similarity=0.245 Sum_probs=105.0
Q ss_pred cEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEe
Q 005093 511 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 590 (715)
Q Consensus 511 ~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 590 (715)
|.|+++|.||.+. +... ...........|+.+.++.+++.- ..+++.++||||||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~---S~~~-~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGY---SSPH-WDPDFPDYTTDDLAADLEALREAL--GIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTT---SSSC-CGSGSCTHCHHHHHHHHHHHHHHH--TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCC---CCCC-ccCCcccccHHHHHHHHHHHHHHh--CCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 6899999999543 3210 002233445889999999998873 345699999999999999999999999999999
Q ss_pred cCCcc--hh-h--hhccC-----C--C-CCC------------c----eeeecc-CCCC-----CCCCCCC--CCh----
Q 005093 591 RNPLC--NL-A--LMVGT-----T--D-IPD------------W----CYVESY-GSKG-----KDSFTES--PSV---- 629 (715)
Q Consensus 591 ~~~~~--~~-~--~~~~~-----~--~-~~~------------~----~~~~~~-~~~~-----~~~~~~~--~~~---- 629 (715)
.+++. .. . ..... . + ... + ...... .... ...+... ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 99851 00 0 00000 0 0 000 0 000000 0000 0000000 000
Q ss_pred -h-hHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCC
Q 005093 630 -E-DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 694 (715)
Q Consensus 630 -~-~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 694 (715)
. ....+...++...+.++++|+|+++|++|..+|+..+..+.+.+. ..++++++++||...
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~GH~~~ 217 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIP----NSQLVLIEGSGHFAF 217 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHST----TEEEEEETTCCSTHH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcC----CCEEEECCCCChHHH
Confidence 0 001112222334567899999999999999999888777554443 488999999999754
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-10 Score=126.51 Aligned_cols=128 Identities=25% Similarity=0.291 Sum_probs=92.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhC-C-cEEEEEcCC-CCCCCchhhhhcCCCCCCccch
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-G-YSLLIVNYR-GSLGFGEEALQSLPGKVGSQDV 541 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~-G-~~vi~~d~r-G~~~~g~~~~~~~~~~~~~~~~ 541 (715)
+...++.|......++.|+||++|||++..+..... ....|+.+ + ++|+.++|| |..++........+.+. .+
T Consensus 79 l~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~---g~ 154 (493)
T cd00312 79 LYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNY---GL 154 (493)
T ss_pred CeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcch---hH
Confidence 444688897544467899999999998876554332 23444443 3 999999999 66555443322223333 37
Q ss_pred hhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhh--CCCceeEEEecCCcch
Q 005093 542 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 596 (715)
Q Consensus 542 ~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~~ 596 (715)
.|+..+++|+.++ ...|+++|.|+|+|+||.++..++.. .+.+|+++|+.++...
T Consensus 155 ~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 155 KDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 8999999999875 24799999999999999999988775 2457999999887653
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-08 Score=100.08 Aligned_cols=204 Identities=17% Similarity=0.175 Sum_probs=125.5
Q ss_pred CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 161 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
+.+||++|+++|+++.+. ......+.++.|||+++. |+|.-- .|+ -.++|.++|+
T Consensus 422 r~el~vididngnv~~id-kS~~~lItdf~~~~nsr~----iAYafP------~gy-----~tq~Iklydm--------- 476 (668)
T COG4946 422 RFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNSRW----IAYAFP------EGY-----YTQSIKLYDM--------- 476 (668)
T ss_pred ceEEEEEEecCCCeeEec-ccccceeEEEEEcCCcee----EEEecC------cce-----eeeeEEEEec---------
Confidence 478999999999999884 233346789999999999 999741 222 2357889997
Q ss_pred hhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCcccc----------ceeEeeecCCCCCC---C
Q 005093 241 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT----------DSLHRIDWPTNGNF---S 307 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~----------~~l~~~~~~~~~~~---~ 307 (715)
.++.+-.+|.+.....+|+|.|||++|+|++.+.-.. ..+. ..-|++-|..+-.. +
T Consensus 477 --------~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdP---s~Drv~fnf~f~~vskPylv~L~~g~~sP~~q 545 (668)
T COG4946 477 --------DGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDP---SNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQ 545 (668)
T ss_pred --------CCCeEEEecCCcccccCcccCCCCcEEEEEeccccCC---CCCeeEEEEEEeeeccceEEEecCCCCChhhc
Confidence 8889999999999999999999999999999885211 0111 11233333322211 1
Q ss_pred c----ccceeeeeeceec-CCCCCccccccCCCCCCccccCCCEEEEEeeeCC-----------eeEEEEEECCCCcEEE
Q 005093 308 S----LEKIVDVIPVVQC-AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS-----------SQVIISVNVSSGELLR 371 (715)
Q Consensus 308 l----t~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~-----------~~~l~~~d~~tg~~~~ 371 (715)
. +....+ +.+-.. ...+.||- =......+.-..+|+.++|+..-+| ...|-.+|++++++++
T Consensus 546 ~p~~~~~ea~e-~dle~ie~r~eP~pV-ee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e 623 (668)
T COG4946 546 PPDEANSEAGE-VDLEGIEDRVEPFPV-EEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE 623 (668)
T ss_pred CchhcCccccc-eehhhhccccccccc-CccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHH
Confidence 1 000000 000000 00111210 0011123445668887877775332 2357788998888887
Q ss_pred ecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 372 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 372 l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
+..+-. ...+|+|+..+++.. -..|+++++.
T Consensus 624 ~k~nvs---s~rlS~D~s~ilvk~-----d~kl~~f~ve 654 (668)
T COG4946 624 YKDNVS---SFRLSSDGSKILVKL-----DGKLRLFDVE 654 (668)
T ss_pred Hhcccc---eEEEcCCCCEEEEEe-----CCeEEEEecc
Confidence 776543 346788999888733 2347777754
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-07 Score=97.04 Aligned_cols=277 Identities=14% Similarity=0.053 Sum_probs=137.5
Q ss_pred cccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCcccc
Q 005093 11 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVH 90 (715)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (715)
.+.+...|..+++++.+ +...+...+ ..+.....++||||++|+...... +.-..|.+...|....+-..+...
T Consensus 7 ~~~~~~~I~~~~~~~~g-~l~~~~~~~---~~~~~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~~g~l~~~~~~~~~~- 80 (330)
T PRK11028 7 ASPESQQIHVWNLNHEG-ALTLLQVVD---VPGQVQPMVISPDKRHLYVGVRPE-FRVLSYRIADDGALTFAAESPLPG- 80 (330)
T ss_pred EcCCCCCEEEEEECCCC-ceeeeeEEe---cCCCCccEEECCCCCEEEEEECCC-CcEEEEEECCCCceEEeeeecCCC-
Confidence 34455667777775433 212111111 114567789999999886554422 322334444334433222221110
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
....+.++|||++|+..... ...|.+++++
T Consensus 81 -------~p~~i~~~~~g~~l~v~~~~-------------------------------------------~~~v~v~~~~ 110 (330)
T PRK11028 81 -------SPTHISTDHQGRFLFSASYN-------------------------------------------ANCVSVSPLD 110 (330)
T ss_pred -------CceEEEECCCCCEEEEEEcC-------------------------------------------CCeEEEEEEC
Confidence 12689999999988665321 1567888875
Q ss_pred C-CceE-eecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCC
Q 005093 171 S-GEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 248 (715)
Q Consensus 171 ~-g~~~-~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (715)
+ |... .+.............++|||+. ++... . ....|+++|+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~----l~v~~-~-------------~~~~v~v~d~~---------------- 156 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRT----LWVPC-L-------------KEDRIRLFTLS---------------- 156 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCE----EEEee-C-------------CCCEEEEEEEC----------------
Confidence 3 3221 1100122223456789999986 54433 2 22368888872
Q ss_pred CCCCcee-----cC-CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecC
Q 005093 249 EDLPVVN-----LT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA 322 (715)
Q Consensus 249 ~~~~~~~-----lt-~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~ 322 (715)
..+.... .. ......+...|+|||++|+...... ..|.+++++.+.. .+. .+..+...+
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~----------~~v~v~~~~~~~~-~~~----~~~~~~~~p 221 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN----------SSVDVWQLKDPHG-EIE----CVQTLDMMP 221 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC----------CEEEEEEEeCCCC-CEE----EEEEEecCC
Confidence 2222211 11 1122356789999999776554332 3577777763211 110 011111111
Q ss_pred CCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC--CCCCceeEEEeecCCEEEEEEe
Q 005093 323 EGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNIIAVSS 396 (715)
Q Consensus 323 ~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~--~~~~~~~~~~s~~~~~l~~~~~ 396 (715)
.. +++. .....+.++|||+++|......+.-.+|.++.+++..+.+.. .........++++|++|+++..
T Consensus 222 ~~--~~~~--~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 222 AD--FSDT--RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred Cc--CCCC--ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence 11 1100 011235688999977775333444556666655443332211 1111123578889988887653
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-10 Score=114.97 Aligned_cols=190 Identities=18% Similarity=0.203 Sum_probs=99.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCC------chhh-hhc-------------CCCCCCc
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF------GEEA-LQS-------------LPGKVGS 538 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~------g~~~-~~~-------------~~~~~~~ 538 (715)
+++|+|||-||.+.. ...|...+..||++||+|+++++|..... ...- ... .......
T Consensus 98 ~~~PvvIFSHGlgg~--R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGS--RTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT----TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCCcc--hhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 789999999996555 44688899999999999999999943211 1110 000 0000000
Q ss_pred -----------cchhhHHHHHHHHHH--c------------------CCCCCceEEEEEeChhHHHHHHHHhhCCCceeE
Q 005093 539 -----------QDVNDVLTAIDHVID--M------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 587 (715)
Q Consensus 539 -----------~~~~d~~~~i~~l~~--~------------------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 587 (715)
.-..|+..+++.|.+ . +.+|.++|+++|||+||..++.++.+ ..+|++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~-d~r~~~ 254 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQ-DTRFKA 254 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--E
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhh-ccCcce
Confidence 113456666666653 1 23567899999999999999988776 478999
Q ss_pred EEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHH
Q 005093 588 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG 667 (715)
Q Consensus 588 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~ 667 (715)
+|++.|+.- |..+ .....++.|+|+|+.+. .. -....
T Consensus 255 ~I~LD~W~~------------------------------Pl~~-----------~~~~~i~~P~L~InSe~-f~-~~~~~ 291 (379)
T PF03403_consen 255 GILLDPWMF------------------------------PLGD-----------EIYSKIPQPLLFINSES-FQ-WWENI 291 (379)
T ss_dssp EEEES---T------------------------------TS-G-----------GGGGG--S-EEEEEETT-T---HHHH
T ss_pred EEEeCCccc------------------------------CCCc-----------ccccCCCCCEEEEECcc-cC-ChhhH
Confidence 999888531 1000 00134678999998764 22 11222
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCCccCC------CC------------Cc----hHHHHHHHHHHHHHhcC
Q 005093 668 LQYARALREKGVETKVIVFPNDVHGIE------RP------------QS----DFESFLNIGLWFKKYCK 715 (715)
Q Consensus 668 ~~~~~~l~~~g~~~~~~~~~~~~H~~~------~~------------~~----~~~~~~~i~~wl~~~l~ 715 (715)
..+ +.+...+....++.+.|..|.-. .+ .. .....+.+++||++||+
T Consensus 292 ~~~-~~~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 292 FRM-KKVISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp HHH-HTT--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH-HHHhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 222 22334456678899999999522 11 01 12345568899999874
|
|
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=99.12 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=75.9
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHH-hCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchh
Q 005093 464 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 542 (715)
Q Consensus 464 ~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la-~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 542 (715)
++..++-.|. ....|++++.|||+.+ .-.|...+..+. ..-..|+++|+|| ||.+-.+....--......
T Consensus 61 t~n~Y~t~~~----~t~gpil~l~HG~G~S--~LSfA~~a~el~s~~~~r~~a~DlRg---HGeTk~~~e~dlS~eT~~K 131 (343)
T KOG2564|consen 61 TFNVYLTLPS----ATEGPILLLLHGGGSS--ALSFAIFASELKSKIRCRCLALDLRG---HGETKVENEDDLSLETMSK 131 (343)
T ss_pred eEEEEEecCC----CCCccEEEEeecCccc--chhHHHHHHHHHhhcceeEEEeeccc---cCccccCChhhcCHHHHHH
Confidence 6776666663 5678999999998877 345666666553 4456789999999 6654322111111112356
Q ss_pred hHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecC
Q 005093 543 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARN 592 (715)
Q Consensus 543 d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~ 592 (715)
|+.+.+.++... .+.+|.|+||||||.++.+.|... |. +.+++.+.
T Consensus 132 D~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 132 DFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred HHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 777777766543 357899999999999998877642 43 45555443
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=86.91 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=117.1
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCC--CCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS--LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~--~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
.-+||+.||.+..+.+......+..|+.+|+.|..++++-. -..|.. -+......--...+.++..|.+. .+
T Consensus 14 ~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~r----kPp~~~~t~~~~~~~~~aql~~~--l~ 87 (213)
T COG3571 14 PVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRR----KPPPGSGTLNPEYIVAIAQLRAG--LA 87 (213)
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCC----CCcCccccCCHHHHHHHHHHHhc--cc
Confidence 34678889988888777888888999999999999996521 111100 01111111134556666677666 35
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecC-CcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHh
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHS 637 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (715)
..++++-|+||||-++.+++...-..+.++++.+ |+.. -+. | +..
T Consensus 88 ~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp------------------pGK---------P-----e~~-- 133 (213)
T COG3571 88 EGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP------------------PGK---------P-----EQL-- 133 (213)
T ss_pred CCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC------------------CCC---------c-----ccc--
Confidence 6789999999999999988765433466666543 3210 010 1 111
Q ss_pred cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCC---------CCchHHHHHHHHH
Q 005093 638 KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---------PQSDFESFLNIGL 708 (715)
Q Consensus 638 ~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---------~~~~~~~~~~i~~ 708 (715)
-..++..+++|+||.+|+.|+.-..++. .... ...+++++.++++.|.+-- ........+++..
T Consensus 134 --Rt~HL~gl~tPtli~qGtrD~fGtr~~V---a~y~--ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~ 206 (213)
T COG3571 134 --RTEHLTGLKTPTLITQGTRDEFGTRDEV---AGYA--LSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAG 206 (213)
T ss_pred --hhhhccCCCCCeEEeecccccccCHHHH---Hhhh--cCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHH
Confidence 1245678899999999999998755443 1111 2357899999999996542 1222334456777
Q ss_pred HHHH
Q 005093 709 WFKK 712 (715)
Q Consensus 709 wl~~ 712 (715)
|.++
T Consensus 207 ~~~~ 210 (213)
T COG3571 207 WARR 210 (213)
T ss_pred HHhh
Confidence 7654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-08 Score=99.30 Aligned_cols=204 Identities=13% Similarity=0.105 Sum_probs=116.7
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 123 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 123 (715)
.....|+|||+.++.....+ + .+..++ .+++........... ..+.|+|||+.|++....
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~-~--~l~~~d~~~~~~~~~~~~~~~~----------~~~~~~~dg~~l~~~~~~------ 135 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDD-N--LVTVIDIETRKVLAEIPVGVEP----------EGMAVSPDGKIVVNTSET------ 135 (300)
T ss_pred ccEEEECCCCCEEEEEcCCC-C--eEEEEECCCCeEEeEeeCCCCc----------ceEEECCCCCEEEEEecC------
Confidence 45678999999775543322 2 344444 333322222221222 579999999998875332
Q ss_pred CccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEE
Q 005093 124 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 203 (715)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~ 203 (715)
...++.+|.++++.... .........+.|+|||+. ++
T Consensus 136 -------------------------------------~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~ 172 (300)
T TIGR03866 136 -------------------------------------TNMAHFIDTKTYEIVDN--VLVDQRPRFAEFTADGKE----LW 172 (300)
T ss_pred -------------------------------------CCeEEEEeCCCCeEEEE--EEcCCCccEEEECCCCCE----EE
Confidence 13456678777665432 112223456899999997 76
Q ss_pred EEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCC-------CccccceeEcCCCCeE
Q 005093 204 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFL 275 (715)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~-------~~~~~~~~~spdg~~l 275 (715)
+... ....|+.+|+ ++++. ..++.. .......+|||||+.+
T Consensus 173 ~~~~--------------~~~~v~i~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 173 VSSE--------------IGGTVSVIDV-----------------ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred EEcC--------------CCCEEEEEEc-----------------CcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 6542 1236888886 44432 222211 1123457899999986
Q ss_pred EEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCC
Q 005093 276 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 355 (715)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~ 355 (715)
+...... ..|.++|+.+++..... .. . ..+..+.|+|||+.|+.....
T Consensus 222 ~~~~~~~----------~~i~v~d~~~~~~~~~~----------~~---~-------~~~~~~~~~~~g~~l~~~~~~-- 269 (300)
T TIGR03866 222 FVALGPA----------NRVAVVDAKTYEVLDYL----------LV---G-------QRVWQLAFTPDEKYLLTTNGV-- 269 (300)
T ss_pred EEEcCCC----------CeEEEEECCCCcEEEEE----------Ee---C-------CCcceEEECCCCCEEEEEcCC--
Confidence 5544322 25888888764432110 00 0 124567899999977654332
Q ss_pred eeEEEEEECCCCcE-EEec
Q 005093 356 SQVIISVNVSSGEL-LRIT 373 (715)
Q Consensus 356 ~~~l~~~d~~tg~~-~~l~ 373 (715)
...|..+|+.+++. .++.
T Consensus 270 ~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 270 SNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCeEEEEECCCCcEEEEEE
Confidence 34688889988885 4443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-08 Score=93.33 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=79.6
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
.+.+..+||-+||.|++ ...|..+...|.+.|+.++.++|+| +|.... + .-....-.+-...+..|.++-.
T Consensus 31 ~gs~~gTVv~~hGsPGS--H~DFkYi~~~l~~~~iR~I~iN~PG---f~~t~~---~-~~~~~~n~er~~~~~~ll~~l~ 101 (297)
T PF06342_consen 31 SGSPLGTVVAFHGSPGS--HNDFKYIRPPLDEAGIRFIGINYPG---FGFTPG---Y-PDQQYTNEERQNFVNALLDELG 101 (297)
T ss_pred CCCCceeEEEecCCCCC--ccchhhhhhHHHHcCeEEEEeCCCC---CCCCCC---C-cccccChHHHHHHHHHHHHHcC
Confidence 34556689999998887 5577778899999999999999999 443321 1 1111224566677777777655
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCc
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 594 (715)
++ +++.++|||.|+-.|+.++..+| ..++++++|+
T Consensus 102 i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 102 IK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred CC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 65 88999999999999999999886 4577777764
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=107.34 Aligned_cols=227 Identities=17% Similarity=0.171 Sum_probs=133.3
Q ss_pred CCCCCcEEEEEcCCCCCC-CCccchHHHHHHHhCCcEEEEEcCC--------------CC-CCCchhhhhcCCCCCCccc
Q 005093 477 DCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYR--------------GS-LGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~-~~~~~~~~~~~la~~G~~vi~~d~r--------------G~-~~~g~~~~~~~~~~~~~~~ 540 (715)
.+++.|+++++||-.+.. ........-....+.|.+++++|-. |. .++-.++.+..... +...
T Consensus 50 m~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~-~~~q 128 (316)
T COG0627 50 MGRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWAS-GPYQ 128 (316)
T ss_pred cCCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCcccc-Cccc
Confidence 457889999999944332 1112233444567888888888532 11 11111111111000 1122
Q ss_pred hhhHH-HHHH-HHHHcCCCCC--ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccC
Q 005093 541 VNDVL-TAID-HVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 616 (715)
Q Consensus 541 ~~d~~-~~i~-~l~~~~~~d~--~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (715)
.++++ .-+- .+.+...++. ++.+|+||||||+-|+.+|++||++|+.+...+|+++........ ......++
T Consensus 129 ~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~----~~~~~~~g 204 (316)
T COG0627 129 WETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPT----LAMGDPWG 204 (316)
T ss_pred hhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccccccccc----cccccccc
Confidence 33332 2222 3333333454 389999999999999999999999999999999998765332221 00001111
Q ss_pred CCCCCCCCCCCChhhHHHHHhcCchhhccC--------------CCCcEEEEeeCCCCcCC--chHHHHHHHHHHHcCCc
Q 005093 617 SKGKDSFTESPSVEDLTRFHSKSPISHISK--------------VKTPTIFLLGAQDLRVP--VSNGLQYARALREKGVE 680 (715)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--------------i~~P~Lii~G~~D~~v~--~~~~~~~~~~l~~~g~~ 680 (715)
......+.+... ...+..++|...+.+ ...++++-+|..|.... ....+.+.+++.+.|.+
T Consensus 205 ~~~~~~~~G~~~---~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~ 281 (316)
T COG0627 205 GKAFNAMLGPDS---DPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIP 281 (316)
T ss_pred CccHHHhcCCCc---cccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCC
Confidence 111111222111 112334444443332 44678888999998764 33467899999999999
Q ss_pred EEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 681 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 681 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
..+...++.+|.+.... ..+..++.|+...|
T Consensus 282 ~~~~~~~~G~Hsw~~w~---~~l~~~~~~~a~~l 312 (316)
T COG0627 282 NGVRDQPGGDHSWYFWA---SQLADHLPWLAGAL 312 (316)
T ss_pred ceeeeCCCCCcCHHHHH---HHHHHHHHHHHHHh
Confidence 99999988999875433 56778888887765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-07 Score=96.38 Aligned_cols=287 Identities=16% Similarity=0.142 Sum_probs=152.2
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCC--CCCCeEEEEecC-CccEEEEecC-cccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE--NESPIQFELWSQ-SQLEKEFHVP-QTVH 90 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~-~~~~ 90 (715)
...|+.+.++....+...+.. .....+.+..++||++++|+.+.+.. .+.-..|.+... |..+.+-... .+.
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~---~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~- 87 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQT---VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS- 87 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEE---EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS-
T ss_pred CCcEEEEEEcCCCCCceEeee---ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC-
Confidence 357888878666654333322 12235577788899998887665542 233345555533 6666655443 121
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
..-.+..+|||++|+...-. ...+.+++++
T Consensus 88 -------~p~~i~~~~~g~~l~vany~-------------------------------------------~g~v~v~~l~ 117 (345)
T PF10282_consen 88 -------SPCHIAVDPDGRFLYVANYG-------------------------------------------GGSVSVFPLD 117 (345)
T ss_dssp -------CEEEEEECTTSSEEEEEETT-------------------------------------------TTEEEEEEEC
T ss_pred -------CcEEEEEecCCCEEEEEEcc-------------------------------------------CCeEEEEEcc
Confidence 11478899999988764221 1456666665
Q ss_pred C-CceEeec--------C----CCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 171 S-GEVQAVK--------G----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 171 ~-g~~~~l~--------~----~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
. |...... + .........+.++|||+. + |+... ....|+.++++
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~----v-~v~dl-------------G~D~v~~~~~~----- 174 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF----V-YVPDL-------------GADRVYVYDID----- 174 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE----E-EEEET-------------TTTEEEEEEE------
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCE----E-EEEec-------------CCCEEEEEEEe-----
Confidence 4 4433321 0 011223457889999996 4 55432 22367777762
Q ss_pred hhhhhhhccCCCCCCcee---cC-CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCccccee
Q 005093 238 ASELELKESSSEDLPVVN---LT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 313 (715)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~---lt-~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~ 313 (715)
..+++... +. ......+...|+|||++++...+.. ..|.++++..... .++. -
T Consensus 175 ----------~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s----------~~v~v~~~~~~~g-~~~~--~ 231 (345)
T PF10282_consen 175 ----------DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS----------NTVSVFDYDPSDG-SLTE--I 231 (345)
T ss_dssp ----------TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT----------TEEEEEEEETTTT-EEEE--E
T ss_pred ----------CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC----------CcEEEEeecccCC-ceeE--E
Confidence 02222222 22 2233478899999999876665443 3577777662111 1110 0
Q ss_pred eeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC--CCCC-ceeEEEeecCCE
Q 005093 314 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP--AESN-FSWSLLTLDGDN 390 (715)
Q Consensus 314 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~--~~~~-~~~~~~s~~~~~ 390 (715)
..+.......... .....+..+|||++||++....+...+|.+|..+|+.+.+.. ..+. -....++++|++
T Consensus 232 ~~~~~~~~~~~~~------~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 232 QTISTLPEGFTGE------NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRY 305 (345)
T ss_dssp EEEESCETTSCSS------SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSE
T ss_pred EEeeecccccccc------CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCE
Confidence 1111111100000 023456789999988887666666678888777888776532 1121 233467889888
Q ss_pred EEEEEeCCCCCCeEEEEe
Q 005093 391 IIAVSSSPVDVPQVKYGY 408 (715)
Q Consensus 391 l~~~~~~~~~p~~l~~~~ 408 (715)
|+......+. -.+|.++
T Consensus 306 l~Va~~~s~~-v~vf~~d 322 (345)
T PF10282_consen 306 LYVANQDSNT-VSVFDID 322 (345)
T ss_dssp EEEEETTTTE-EEEEEEE
T ss_pred EEEEecCCCe-EEEEEEe
Confidence 8876544433 2334444
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-07 Score=94.11 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=74.9
Q ss_pred cceeEcC-CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecC--CCCCccccccCCCCCCcc
Q 005093 264 FFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPW 340 (715)
Q Consensus 264 ~~~~~sp-dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~ 340 (715)
..|.+++ ||+ .+|.+... .|+++|+.+.+...+. ...+.... +++-.|+ +...+++
T Consensus 197 ~rP~~~~~dg~-~~~vs~eG-----------~V~~id~~~~~~~~~~-----~~~~~~~~~~~~~wrP~----g~q~ia~ 255 (352)
T TIGR02658 197 NHPAYSNKSGR-LVWPTYTG-----------KIFQIDLSSGDAKFLP-----AIEAFTEAEKADGWRPG----GWQQVAY 255 (352)
T ss_pred cCCceEcCCCc-EEEEecCC-----------eEEEEecCCCcceecc-----eeeeccccccccccCCC----cceeEEE
Confidence 5567788 665 66777652 4999998776553221 11111110 1111222 3334789
Q ss_pred ccCCCEEEEEeee-------CCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCC-EEEEEEeCCCCCCeEEEEeeccc
Q 005093 341 LSDGCTMLLSSIW-------GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD-NIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 341 ~~dg~~l~~~~~~-------~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~-~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
++||+++|+.... .+..+++.+|++++++..-...........+++|++ .|+.+.... ..|.++|..++
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s---~~VsViD~~t~ 332 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD---KTLYIFDAETG 332 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC---CcEEEEECcCC
Confidence 9999988885531 233689999999988776444333234468999998 555444332 33778887655
Q ss_pred C
Q 005093 413 A 413 (715)
Q Consensus 413 ~ 413 (715)
+
T Consensus 333 k 333 (352)
T TIGR02658 333 K 333 (352)
T ss_pred e
Confidence 3
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.9e-08 Score=100.29 Aligned_cols=226 Identities=15% Similarity=0.218 Sum_probs=124.9
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecC----ccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP----QTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
.....+.+|||++|+. .+..++.-.++.+...|......+.. .+....--...-...+.++|||++++. .+.
T Consensus 88 ~p~~i~~~~~g~~l~v-any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v-~dl-- 163 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYV-ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV-PDL-- 163 (345)
T ss_dssp CEEEEEECTTSSEEEE-EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE-EET--
T ss_pred CcEEEEEecCCCEEEE-EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE-Eec--
Confidence 3467888999998865 45433555566666556555543211 010000000001247889999998854 332
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc--eEeec--CCCCCCccceEEEecCC
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVK--GIPKSLSVGQVVWAPLN 195 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~--~~~l~--~~~~~~~~~~~~~spdg 195 (715)
| ...|++++++.+. +.... ..+......++.|+|||
T Consensus 164 ---------------------------------G-------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg 203 (345)
T PF10282_consen 164 ---------------------------------G-------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDG 203 (345)
T ss_dssp ---------------------------------T-------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTS
T ss_pred ---------------------------------C-------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCc
Confidence 1 2567777776544 43311 13445567789999999
Q ss_pred CCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceec---C---C---CCccccce
Q 005093 196 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL---T---E---SISSAFFP 266 (715)
Q Consensus 196 ~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---t---~---~~~~~~~~ 266 (715)
+. +|...+. .+.|.+++++ ...+..+.+ . . ........
T Consensus 204 ~~-----~Yv~~e~-------------s~~v~v~~~~---------------~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 204 KY-----AYVVNEL-------------SNTVSVFDYD---------------PSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp SE-----EEEEETT-------------TTEEEEEEEE---------------TTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred CE-----EEEecCC-------------CCcEEEEeec---------------ccCCceeEEEEeeeccccccccCCceeE
Confidence 84 5555332 2356666651 012322111 1 1 11146678
Q ss_pred eEcCCCCeEEEEecCCCCCCCCccccceeEeeecC--CCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCC
Q 005093 267 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 344 (715)
Q Consensus 267 ~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~--~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg 344 (715)
.+||||++| |++++. ...|.+++++ ++..+. +..+.+. +. .+..+.++|||
T Consensus 251 ~ispdg~~l-yvsnr~---------~~sI~vf~~d~~~g~l~~--------~~~~~~~--G~-------~Pr~~~~s~~g 303 (345)
T PF10282_consen 251 AISPDGRFL-YVSNRG---------SNSISVFDLDPATGTLTL--------VQTVPTG--GK-------FPRHFAFSPDG 303 (345)
T ss_dssp EE-TTSSEE-EEEECT---------TTEEEEEEECTTTTTEEE--------EEEEEES--SS-------SEEEEEE-TTS
T ss_pred EEecCCCEE-EEEecc---------CCEEEEEEEecCCCceEE--------EEEEeCC--CC-------CccEEEEeCCC
Confidence 899999976 566663 2356666663 332211 1111111 11 23566789999
Q ss_pred CEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 345 CTMLLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 345 ~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
++|++.....+...+|.+|.++|..+.+.
T Consensus 304 ~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 304 RYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 98888777778889999999999988765
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.8e-08 Score=96.06 Aligned_cols=267 Identities=16% Similarity=0.172 Sum_probs=144.8
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
+.+....|+|+|+.|++.... +.-.+|.+ .+++.......... .+..+.|+|+++.|+..+.....
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~--g~i~i~~~-~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~~~~i-- 75 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGD--GTIKVWDL-ETGELLRTLKGHTG---------PVRDVAASADGTYLASGSSDKTI-- 75 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecC--cEEEEEEe-eCCCcEEEEecCCc---------ceeEEEECCCCCEEEEEcCCCeE--
Confidence 668999999999999887653 22223332 33332222221111 12589999999888887653321
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCcc-CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~ 201 (715)
..+....................+.|.++ +..+.... ...|.+|++.+++..... ......+..+.|+|+++.
T Consensus 76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~---- 149 (289)
T cd00200 76 RLWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTF---- 149 (289)
T ss_pred EEEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCE----
Confidence 12221111111111111112223444444 33333333 578999999866654431 223335778999999664
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-CceecCCCCccccceeEcCCCCeEEEEec
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
++.+. .+..|..+|+ ..+ ....+......+....|+|+|+.|++.+.
T Consensus 150 -l~~~~--------------~~~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 150 -VASSS--------------QDGTIKLWDL-----------------RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred -EEEEc--------------CCCcEEEEEc-----------------cccccceeEecCccccceEEECCCcCEEEEecC
Confidence 44431 1236788886 333 33444444556888999999998888776
Q ss_pred CCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
+ ..|.++|+.++........ ....+..+.|++++. +++.....+ .|+
T Consensus 198 ~-----------~~i~i~d~~~~~~~~~~~~-------------------~~~~i~~~~~~~~~~-~~~~~~~~~--~i~ 244 (289)
T cd00200 198 D-----------GTIKLWDLSTGKCLGTLRG-------------------HENGVNSVAFSPDGY-LLASGSEDG--TIR 244 (289)
T ss_pred C-----------CcEEEEECCCCceecchhh-------------------cCCceEEEEEcCCCc-EEEEEcCCC--cEE
Confidence 3 2478888876443211100 001245667888865 545444333 566
Q ss_pred EEECCCCcEEEecC-CCCCceeEEEeecCCEEEEE
Q 005093 361 SVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 361 ~~d~~tg~~~~l~~-~~~~~~~~~~s~~~~~l~~~ 394 (715)
.+|+.+++...... ....+....+++++..++..
T Consensus 245 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred EEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 66776665544433 22233334566665555443
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.4e-09 Score=94.49 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=89.9
Q ss_pred EEEEcCCCCCCCCccchH-HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceE
Q 005093 484 IVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 562 (715)
Q Consensus 484 vv~iHGg~~~~~~~~~~~-~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i 562 (715)
|+++||...+.. ..|.. +.+.|... +.|-.++.. .-++.+.+..|.+.-....+.+
T Consensus 1 v~IvhG~~~s~~-~HW~~wl~~~l~~~-~~V~~~~~~---------------------~P~~~~W~~~l~~~i~~~~~~~ 57 (171)
T PF06821_consen 1 VLIVHGYGGSPP-DHWQPWLERQLENS-VRVEQPDWD---------------------NPDLDEWVQALDQAIDAIDEPT 57 (171)
T ss_dssp EEEE--TTSSTT-TSTHHHHHHHHTTS-EEEEEC--T---------------------S--HHHHHHHHHHCCHC-TTTE
T ss_pred CEEeCCCCCCCc-cHHHHHHHHhCCCC-eEEeccccC---------------------CCCHHHHHHHHHHHHhhcCCCe
Confidence 688999555443 44554 44556555 677666541 1133444444444321123569
Q ss_pred EEEEeChhHHHHHHHH-hhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCch
Q 005093 563 TVVGGSHGGFLTTHLI-GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 641 (715)
Q Consensus 563 ~l~G~S~GG~~a~~~a-~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 641 (715)
.++|||+|+..++.++ .....+++++++++|+....... ..+ . .....+.
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~---~~~------~--------------------~~~f~~~ 108 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEP---FPP------E--------------------LDGFTPL 108 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHC---CTC------G--------------------GCCCTTS
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccc---hhh------h--------------------ccccccC
Confidence 9999999999999999 66778999999999974310000 000 0 0000000
Q ss_pred hhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCC
Q 005093 642 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 694 (715)
Q Consensus 642 ~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 694 (715)
....+..|.+++.+++|+.||++.+..+++++. .+++.++++||...
T Consensus 109 -p~~~l~~~~~viaS~nDp~vp~~~a~~~A~~l~-----a~~~~~~~~GHf~~ 155 (171)
T PF06821_consen 109 -PRDPLPFPSIVIASDNDPYVPFERAQRLAQRLG-----AELIILGGGGHFNA 155 (171)
T ss_dssp -HCCHHHCCEEEEEETTBSSS-HHHHHHHHHHHT------EEEEETS-TTSSG
T ss_pred -cccccCCCeEEEEcCCCCccCHHHHHHHHHHcC-----CCeEECCCCCCccc
Confidence 011233567999999999999999999999984 67999999999543
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=95.81 Aligned_cols=154 Identities=18% Similarity=0.317 Sum_probs=96.6
Q ss_pred ceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCC
Q 005093 101 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI 180 (715)
Q Consensus 101 ~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~ 180 (715)
.+.|+|+|++|++......... ++.+. +...||.++..+.....+. .
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~------------------------------~ks~~--~~~~l~~~~~~~~~~~~i~-l 56 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKS------------------------------GKSYY--GEFELFYLNEKNIPVESIE-L 56 (194)
T ss_pred EEEecccCCEEEEEEEEeeccC------------------------------cceEE--eeEEEEEEecCCCccceee-c
Confidence 6889999999999876321110 11111 2378999988777666662 2
Q ss_pred CCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCC
Q 005093 181 PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI 260 (715)
Q Consensus 181 ~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 260 (715)
.....+.+++|+|+|++ ++..... .+..|..+|+ ++.....+. .
T Consensus 57 ~~~~~I~~~~WsP~g~~----favi~g~-------------~~~~v~lyd~-----------------~~~~i~~~~--~ 100 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNE----FAVIYGS-------------MPAKVTLYDV-----------------KGKKIFSFG--T 100 (194)
T ss_pred cCCCceEEEEECcCCCE----EEEEEcc-------------CCcccEEEcC-----------------cccEeEeec--C
Confidence 33345889999999999 8776421 1225777775 433433443 2
Q ss_pred ccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCcc
Q 005093 261 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 340 (715)
Q Consensus 261 ~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 340 (715)
.......|||+|+.|+..+..+ ...+|.++|..+.+........ ....+.|
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n--------~~G~l~~wd~~~~~~i~~~~~~---------------------~~t~~~W 151 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGN--------LNGDLEFWDVRKKKKISTFEHS---------------------DATDVEW 151 (194)
T ss_pred CCceEEEECCCCCEEEEEEccC--------CCcEEEEEECCCCEEeeccccC---------------------cEEEEEE
Confidence 3456789999999999887543 1235888887753321111000 2345679
Q ss_pred ccCCCEEEEEee
Q 005093 341 LSDGCTMLLSSI 352 (715)
Q Consensus 341 ~~dg~~l~~~~~ 352 (715)
+|||++++..+.
T Consensus 152 sPdGr~~~ta~t 163 (194)
T PF08662_consen 152 SPDGRYLATATT 163 (194)
T ss_pred cCCCCEEEEEEe
Confidence 999998876654
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=110.65 Aligned_cols=132 Identities=23% Similarity=0.212 Sum_probs=91.7
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHHhCC-cEEEEEcCCCCCCCchhhhhcC---C
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVG-YSLLIVNYRGSLGFGEEALQSL---P 533 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~-~~~~~~la~~G-~~vi~~d~rG~~~~g~~~~~~~---~ 533 (715)
+.|.+.| .++.|. .+.++.|+|||||||++..+...- ...-..|+++| ++|+.+|||... +|--....+ .
T Consensus 76 sEDCL~L--NIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~-lGfL~~~~~~~~~ 150 (491)
T COG2272 76 SEDCLYL--NIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGA-LGFLDLSSLDTED 150 (491)
T ss_pred cccceeE--EeeccC--CCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCccccc-ceeeehhhccccc
Confidence 3355444 588887 356779999999999877644321 23456788888 999999999421 221111111 1
Q ss_pred CCCCccchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhCCC---ceeEEEecCCcch
Q 005093 534 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCN 596 (715)
Q Consensus 534 ~~~~~~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~~~~~ 596 (715)
......-+.|++.+++|+.++ ..-|+++|.|+|+|+||+.++.+++. |. +|+.+|+.||.+.
T Consensus 151 ~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 151 AFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 111123478999999999886 34799999999999999999888764 54 7888888888664
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=91.24 Aligned_cols=188 Identities=20% Similarity=0.241 Sum_probs=121.0
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCC-----CCCC-CchhhhhcC--CCCCC--ccchhhHHHHHHHH
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-----GSLG-FGEEALQSL--PGKVG--SQDVNDVLTAIDHV 551 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~r-----G~~~-~g~~~~~~~--~~~~~--~~~~~d~~~~i~~l 551 (715)
-+||++||-+.+ ...|...+..+......-++|.-+ ..++ .+..|.+.. ..+.. ........+.+..|
T Consensus 4 atIi~LHglGDs--g~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~L 81 (206)
T KOG2112|consen 4 ATIIFLHGLGDS--GSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANL 81 (206)
T ss_pred EEEEEEecCCCC--CccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHH
Confidence 479999995544 345555555566667777777421 1111 111221111 00111 11122333444455
Q ss_pred HHc---CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCC
Q 005093 552 IDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 628 (715)
Q Consensus 552 ~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (715)
+++ ..++.+||++-|.|+||.++++++..++....+++..+++..... ...+.| ..
T Consensus 82 i~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~----~~~~~~-----------------~~ 140 (206)
T KOG2112|consen 82 IDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS----IGLPGW-----------------LP 140 (206)
T ss_pred HHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch----hhccCC-----------------cc
Confidence 443 247889999999999999999999988766666766666542110 000000 00
Q ss_pred hhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHH
Q 005093 629 VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 708 (715)
Q Consensus 629 ~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 708 (715)
. .+ .+|++..||+.|++||..-.....+.|+..+..++++.|++.+|... .+.++.+..
T Consensus 141 ~---------------~~-~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~-----~~e~~~~~~ 199 (206)
T KOG2112|consen 141 G---------------VN-YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS-----PQELDDLKS 199 (206)
T ss_pred c---------------cC-cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc-----HHHHHHHHH
Confidence 0 00 57999999999999999999999999999999999999999999775 355778888
Q ss_pred HHHHh
Q 005093 709 WFKKY 713 (715)
Q Consensus 709 wl~~~ 713 (715)
|+++.
T Consensus 200 ~~~~l 204 (206)
T KOG2112|consen 200 WIKTL 204 (206)
T ss_pred HHHHh
Confidence 98763
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-08 Score=100.38 Aligned_cols=206 Identities=17% Similarity=0.264 Sum_probs=106.3
Q ss_pred ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec
Q 005093 99 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 178 (715)
Q Consensus 99 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~ 178 (715)
|....|.+||++|+|.++.. +..+||++||++++.++||
T Consensus 38 F~~~~ft~dG~kllF~s~~d-----------------------------------------g~~nly~lDL~t~~i~QLT 76 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFD-----------------------------------------GNRNLYLLDLATGEITQLT 76 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TT-----------------------------------------SS-EEEEEETTT-EEEE--
T ss_pred ecCCCcCCCCCEEEEEeccC-----------------------------------------CCcceEEEEcccCEEEECc
Confidence 36788999999999987643 3488999999999999995
Q ss_pred CCCCCC-ccceEEEecCCCCCccEEEEEeecCccce------------------eee-eeeec-----------------
Q 005093 179 GIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRK------------------LGI-KYCYN----------------- 221 (715)
Q Consensus 179 ~~~~~~-~~~~~~~spdg~~~~~~i~~~~~~~~~~~------------------~g~-~~~~~----------------- 221 (715)
.... ......+||+++. ++|..+...-++ .|+ .+..+
T Consensus 77 --dg~g~~~~g~~~s~~~~~----~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~ 150 (386)
T PF14583_consen 77 --DGPGDNTFGGFLSPDDRA----LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWK 150 (386)
T ss_dssp ---SS-B-TTT-EE-TTSSE----EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG--
T ss_pred --cCCCCCccceEEecCCCe----EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhcc
Confidence 4321 1224678999988 888653211000 110 00001
Q ss_pred ---------------CCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCC-eEEEEecCCCCC
Q 005093 222 ---------------RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK-FLVFLSAKSSVD 285 (715)
Q Consensus 222 ---------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~-~l~~~~~~~~~~ 285 (715)
..+.|+.+| ..+|+.+.+.........+.|||..- .|+|.-.
T Consensus 151 ~l~~~~~f~e~~~a~p~~~i~~id-----------------l~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHE----- 208 (386)
T PF14583_consen 151 PLTKWKGFREFYEARPHCRIFTID-----------------LKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHE----- 208 (386)
T ss_dssp ---SHHHHHHHHHC---EEEEEEE-----------------TTT--EEEEEEESS-EEEEEEETTEEEEEEEEE------
T ss_pred CccccHHHHHHHhhCCCceEEEEE-----------------CCCCceeEEEecCccccCcccCCCCCCEEEEecc-----
Confidence 112344444 37888888888888889999999554 4555543
Q ss_pred CCCcccc-ceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee-CC-eeEEEEE
Q 005093 286 SGAHSAT-DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GS-SQVIISV 362 (715)
Q Consensus 286 ~g~~~~~-~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~-~~-~~~l~~~ 362 (715)
|++..- .+||+++.+++..+.+..... .+ ...---|++||+.|++.... ++ ..-|+.+
T Consensus 209 -Gpw~~Vd~RiW~i~~dg~~~~~v~~~~~----------~e--------~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 209 -GPWDLVDQRIWTINTDGSNVKKVHRRME----------GE--------SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp -S-TTTSS-SEEEEETTS---EESS---T----------TE--------EEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred -CCcceeceEEEEEEcCCCcceeeecCCC----------Cc--------ccccccccCCCCEEEEEeecCCCCceEEEee
Confidence 334443 489999988876654432210 00 11122499999999987663 33 4469999
Q ss_pred ECCCCcEEEecCCCCCceeEEEeecCCEEEE
Q 005093 363 NVSSGELLRITPAESNFSWSLLTLDGDNIIA 393 (715)
Q Consensus 363 d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~ 393 (715)
|++|++.+.+..... .+....++|+..++-
T Consensus 270 d~~t~~~~~~~~~p~-~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 270 DPDTGERRRLMEMPW-CSHFMSSPDGKLFVG 299 (386)
T ss_dssp -TTT--EEEEEEE-S-EEEEEE-TTSSEEEE
T ss_pred CCCCCCceEEEeCCc-eeeeEEcCCCCEEEe
Confidence 999999887755433 122334456665443
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-08 Score=97.74 Aligned_cols=224 Identities=17% Similarity=0.140 Sum_probs=128.4
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHH-hCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcC
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 555 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la-~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~ 555 (715)
.-.+.|.++++||--++ ...|......|+ ..|-.|+++|.|. +|.+...... ......+|+..+++......
T Consensus 48 ~~~~~Pp~i~lHGl~GS--~~Nw~sv~k~Ls~~l~~~v~~vd~Rn---HG~Sp~~~~h--~~~~ma~dv~~Fi~~v~~~~ 120 (315)
T KOG2382|consen 48 NLERAPPAIILHGLLGS--KENWRSVAKNLSRKLGRDVYAVDVRN---HGSSPKITVH--NYEAMAEDVKLFIDGVGGST 120 (315)
T ss_pred ccCCCCceEEecccccC--CCCHHHHHHHhcccccCceEEEeccc---CCCCcccccc--CHHHHHHHHHHHHHHccccc
Confidence 45678999999995444 467777777664 4567899999998 6665432211 12233566666666665432
Q ss_pred CCCCceEEEEEeChhH-HHHHHHHhhCCCceeEEEec--CCc-chh-----h---hhccCCCCC-------Cc-------
Q 005093 556 LANPSKVTVVGGSHGG-FLTTHLIGQAPDKFVAAAAR--NPL-CNL-----A---LMVGTTDIP-------DW------- 609 (715)
Q Consensus 556 ~~d~~~i~l~G~S~GG-~~a~~~a~~~p~~~~~~v~~--~~~-~~~-----~---~~~~~~~~~-------~~------- 609 (715)
-..++.|+|||||| .+++..+...|+++..+|+. +|. +.- . ......+.. .+
T Consensus 121 --~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~ 198 (315)
T KOG2382|consen 121 --RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIE 198 (315)
T ss_pred --ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 24679999999999 66777777788877665543 331 100 0 000000000 00
Q ss_pred --------ee-eeccC--CCCCCCCCCCCCh---hhHHHHHhcCchhhc--cCCCCcEEEEeeCCCCcCCchHHHHHHHH
Q 005093 610 --------CY-VESYG--SKGKDSFTESPSV---EDLTRFHSKSPISHI--SKVKTPTIFLLGAQDLRVPVSNGLQYARA 673 (715)
Q Consensus 610 --------~~-~~~~~--~~~~~~~~~~~~~---~~~~~~~~~sp~~~~--~~i~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (715)
.+ ...+. .......+..+.. +....+...+.-..+ .....|+|+++|.++..++.++-.++.+.
T Consensus 199 ~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~ 278 (315)
T KOG2382|consen 199 VGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKI 278 (315)
T ss_pred HhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHh
Confidence 00 00000 0000000000000 011111112222222 45568999999999999987766555555
Q ss_pred HHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 674 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 674 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+. .++++.++++||+...+. .+++.+.|.+|+.++.
T Consensus 279 fp----~~e~~~ld~aGHwVh~E~-P~~~~~~i~~Fl~~~~ 314 (315)
T KOG2382|consen 279 FP----NVEVHELDEAGHWVHLEK-PEEFIESISEFLEEPE 314 (315)
T ss_pred cc----chheeecccCCceeecCC-HHHHHHHHHHHhcccC
Confidence 44 389999999999887554 4588999999887653
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.96 E-value=8e-10 Score=123.22 Aligned_cols=129 Identities=22% Similarity=0.228 Sum_probs=85.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc--cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchh
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 542 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~--~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 542 (715)
|...|+.|.......++|++|+||||++..+.. ........++.++++||.++||... +|--.........+...+.
T Consensus 109 L~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~-~Gfl~~~~~~~~~gN~Gl~ 187 (535)
T PF00135_consen 109 LYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGA-FGFLSLGDLDAPSGNYGLL 187 (535)
T ss_dssp -EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HH-HHH-BSSSTTSHBSTHHHH
T ss_pred HHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccc-cccccccccccCchhhhhh
Confidence 455699998765555899999999998877655 3334456678999999999999421 1111000000001333488
Q ss_pred hHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecCCc
Q 005093 543 DVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPL 594 (715)
Q Consensus 543 d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~ 594 (715)
|...|++|+.++ ..-|+++|.|+|+|+||..+..++..- ..+|+.+|+.|+.
T Consensus 188 Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 188 DQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp HHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 999999999986 346999999999999999988777652 3589999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=97.70 Aligned_cols=196 Identities=15% Similarity=0.075 Sum_probs=117.2
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCC----cEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 463 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 463 ~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G----~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
.+....+|+|.++.+..++|+++++||-.+.... .....++.|.+.| -.++.+|+--....... .. .. .
T Consensus 80 ~~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g-~i~~~~dsli~~g~i~pai~vgid~~d~~~R~~~----~~-~n-~ 152 (299)
T COG2382 80 SERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSG-RIPRILDSLIAAGEIPPAILVGIDYIDVKKRREE----LH-CN-E 152 (299)
T ss_pred cceeEEEEeCCCCCccccccEEEEeccHHHHhcC-ChHHHHHHHHHcCCCCCceEEecCCCCHHHHHHH----hc-cc-H
Confidence 3456678999999999999999999994333211 2233455555544 56788886532111111 11 00 0
Q ss_pred cchhhHH-HHHHHHHHcCC--CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeecc
Q 005093 539 QDVNDVL-TAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 615 (715)
Q Consensus 539 ~~~~d~~-~~i~~l~~~~~--~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (715)
.-...+. +.+-++.+... -+.+.-+|+|.|+||.++++++.++|++|..+++.||.+........
T Consensus 153 ~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~~------------ 220 (299)
T COG2382 153 AYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDTQ------------ 220 (299)
T ss_pred HHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccccc------------
Confidence 0122222 23334444422 35566789999999999999999999999999999997753311100
Q ss_pred CCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCC
Q 005093 616 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 694 (715)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 694 (715)
+..+ .....+-.........-++...++.+.+. ...+++++.|++.+.++.+..|+| ||.+.
T Consensus 221 -----------~~~~---~~~~l~~~~a~~~~~~~~l~~g~~~~~~~--~pNr~L~~~L~~~g~~~~yre~~G-gHdw~ 282 (299)
T COG2382 221 -----------PQGE---VAESLKILHAIGTDERIVLTTGGEEGDFL--RPNRALAAQLEKKGIPYYYREYPG-GHDWA 282 (299)
T ss_pred -----------cccc---hhhhhhhhhccCccceEEeecCCcccccc--chhHHHHHHHHhcCCcceeeecCC-CCchh
Confidence 0001 11111111112222233344444444444 445788999999999999999998 99775
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.7e-09 Score=105.94 Aligned_cols=231 Identities=19% Similarity=0.264 Sum_probs=141.4
Q ss_pred CCCcEEEEEcCCCCCCCCc--c--chHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCC--------CCCccchhhHHH
Q 005093 479 SCDPLIVVLHGGPHSVSLS--S--YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--------KVGSQDVNDVLT 546 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~--~--~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~--------~~~~~~~~d~~~ 546 (715)
+++|+|++.||--.++... . -...+-.|+++||.|..-+.|| ..|++.-....+. .|.+....|+-+
T Consensus 71 ~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA 149 (403)
T KOG2624|consen 71 KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPA 149 (403)
T ss_pred CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHH
Confidence 8899999999943332111 1 1224456899999999999999 4455443221111 122334679999
Q ss_pred HHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC---ceeEEEecCCcchhhhh---------------------cc
Q 005093 547 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALM---------------------VG 602 (715)
Q Consensus 547 ~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~~~~~~~~~---------------------~~ 602 (715)
.|+++.+. ...+++..+|||.|+.....++...|+ +++.+++++|+.-+... .+
T Consensus 150 ~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg 227 (403)
T KOG2624|consen 150 MIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFG 227 (403)
T ss_pred HHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcC
Confidence 99999987 357899999999999999988887765 68889999987633200 00
Q ss_pred CCCC-CC-c---------eeee-------------ccCCCCC--------CCCCCCCC---h------------------
Q 005093 603 TTDI-PD-W---------CYVE-------------SYGSKGK--------DSFTESPS---V------------------ 629 (715)
Q Consensus 603 ~~~~-~~-~---------~~~~-------------~~~~~~~--------~~~~~~~~---~------------------ 629 (715)
.... +. + +... ..+.... ..+...|. .
T Consensus 228 ~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~y 307 (403)
T KOG2624|consen 228 RKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKY 307 (403)
T ss_pred CccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCcccc
Confidence 0000 00 0 0000 0000000 00000000 0
Q ss_pred -----hhHHHHHh-cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--CCCCCchHH
Q 005093 630 -----EDLTRFHS-KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERPQSDFE 701 (715)
Q Consensus 630 -----~~~~~~~~-~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~--~~~~~~~~~ 701 (715)
.+...+.. ..|...+.++.+|+.+.+|..|.++.++....+...+..... ...+.+++-.|. +........
T Consensus 308 D~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~ 386 (403)
T KOG2624|consen 308 DYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEE 386 (403)
T ss_pred CCCccccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHH
Confidence 11222222 234556788899999999999999999988877777765433 233336777885 233455678
Q ss_pred HHHHHHHHHHHh
Q 005093 702 SFLNIGLWFKKY 713 (715)
Q Consensus 702 ~~~~i~~wl~~~ 713 (715)
+++.|++.+++.
T Consensus 387 vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 387 VYDPVIERLRLF 398 (403)
T ss_pred HHHHHHHHHHhh
Confidence 899999988754
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=100.63 Aligned_cols=203 Identities=17% Similarity=0.238 Sum_probs=116.9
Q ss_pred EEEEe-cCCCCCCCCCcEEEEEcCCCCCCCCccc--hH---HHHHHHhCCcEEEEEcCCCCC--CCchhhhhcCCCCCCc
Q 005093 467 AIFVS-SSHKKDCSCDPLIVVLHGGPHSVSLSSY--SK---SLAFLSSVGYSLLIVNYRGSL--GFGEEALQSLPGKVGS 538 (715)
Q Consensus 467 ~~l~~-P~~~~~~~~~P~vv~iHGg~~~~~~~~~--~~---~~~~la~~G~~vi~~d~rG~~--~~g~~~~~~~~~~~~~ 538 (715)
-|++. |...+ .+..|+|||+|||++....... .. ....| . ...++++||..+. .+ +....
T Consensus 108 ~Wlvk~P~~~~-pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l-~-~~SILvLDYsLt~~~~~---------~~~yP 175 (374)
T PF10340_consen 108 YWLVKAPNRFK-PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLL-P-EVSILVLDYSLTSSDEH---------GHKYP 175 (374)
T ss_pred EEEEeCCcccC-CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHc-C-CCeEEEEeccccccccC---------CCcCc
Confidence 46776 66432 3345999999999876533211 11 11222 2 5599999998754 11 12233
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC--C---CceeEEEecCCcchhhhhccCCCCCCce---
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--P---DKFVAAAARNPLCNLALMVGTTDIPDWC--- 610 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p---~~~~~~v~~~~~~~~~~~~~~~~~~~~~--- 610 (715)
.++.++.+..++|.+.. ..++|.|+|.|+||.+++.++... + ..-+.+|++||++++...... +...+.
T Consensus 176 tQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~-~~~~~~~n~ 252 (374)
T PF10340_consen 176 TQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQ-EGSSYHDNE 252 (374)
T ss_pred hHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCC-CCccccccc
Confidence 45889999999999542 247899999999999999876421 1 235899999999987521110 000000
Q ss_pred eeeccCCC----CCCCCCCC---------------CChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHH
Q 005093 611 YVESYGSK----GKDSFTES---------------PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 671 (715)
Q Consensus 611 ~~~~~~~~----~~~~~~~~---------------~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~ 671 (715)
..+..... ....+.+. +..-+.+.|... +. ++-++++.|+++-.. ++..++.
T Consensus 253 ~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I-----~~--~~~vfVi~Ge~Evfr--ddI~~~~ 323 (374)
T PF10340_consen 253 KRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDI-----LK--KYSVFVIYGEDEVFR--DDILEWA 323 (374)
T ss_pred cccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHh-----cc--CCcEEEEECCccccH--HHHHHHH
Confidence 00000000 00000000 000001111111 11 257999999988655 7788999
Q ss_pred HHHHHcCC-----cEEEEEeCCCCccC
Q 005093 672 RALREKGV-----ETKVIVFPNDVHGI 693 (715)
Q Consensus 672 ~~l~~~g~-----~~~~~~~~~~~H~~ 693 (715)
+.+...+. ..++.+-+++.|.-
T Consensus 324 ~~~~~~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 324 KKLNDVKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHhhcCccccCCcceEEEecCCcccc
Confidence 99986543 36777788888853
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-07 Score=93.96 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=87.0
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-ecC---CCC
Q 005093 185 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLT---ESI 260 (715)
Q Consensus 185 ~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt---~~~ 260 (715)
-+..++|||||++ ++.++ .+..++++|= .+|+.. .|. .+.
T Consensus 192 FV~~VRysPDG~~----Fat~g---------------sDgki~iyDG-----------------ktge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 192 FVNCVRYSPDGSR----FATAG---------------SDGKIYIYDG-----------------KTGEKVGELEDSDAHK 235 (603)
T ss_pred ceeeEEECCCCCe----EEEec---------------CCccEEEEcC-----------------CCccEEEEecCCCCcc
Confidence 3567899999998 76655 2347888883 444433 333 346
Q ss_pred ccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC-CC---------------------cccceeeeeec
Q 005093 261 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FS---------------------SLEKIVDVIPV 318 (715)
Q Consensus 261 ~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~-~~---------------------lt~~~~~~~~~ 318 (715)
+.+..++||||+++++-.+.+.+ +.++|..+.+. +. ++-.....+.+
T Consensus 236 GsIfalsWsPDs~~~~T~SaDkt-----------~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ 304 (603)
T KOG0318|consen 236 GSIFALSWSPDSTQFLTVSADKT-----------IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINY 304 (603)
T ss_pred ccEEEEEECCCCceEEEecCCce-----------EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEE
Confidence 67999999999999998887643 23333333221 00 00001111111
Q ss_pred eecCCCC---CccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecC-CEEE
Q 005093 319 VQCAEGD---CFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDG-DNII 392 (715)
Q Consensus 319 ~~~~~~~---~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~-~~l~ 392 (715)
+...... .+. .+..++..+.-++|+++| ++.+.+| +|..++..+|..-++......-....+...+ +.++
T Consensus 305 ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i-~SgsyDG--~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 305 LNPSDPSVLKVIS-GHNKSITALTVSPDGKTI-YSGSYDG--HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred ecccCCChhheec-ccccceeEEEEcCCCCEE-EeeccCc--eEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 1111111 011 133355667778899755 4444443 7888888888888776443322333444444 4443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=97.57 Aligned_cols=121 Identities=17% Similarity=0.231 Sum_probs=75.1
Q ss_pred cCceEEEEEccCCc--eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 160 RQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 160 ~~~~l~~~~~~~g~--~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
...++|+|+..-.+ ..++ +.....+.++.||||++. |+-.+- ..-..||..+
T Consensus 344 Dd~tlflW~p~~~kkpi~rm--tgHq~lVn~V~fSPd~r~----IASaSF-------------DkSVkLW~g~------- 397 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRM--TGHQALVNHVSFSPDGRY----IASASF-------------DKSVKLWDGR------- 397 (480)
T ss_pred CCceEEEecccccccchhhh--hchhhheeeEEECCCccE----EEEeec-------------ccceeeeeCC-------
Confidence 34789999874322 2334 233345778999999998 887652 1212444443
Q ss_pred hhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC-Ccccceeeee
Q 005093 238 ASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVI 316 (715)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~ 316 (715)
.++-...+-.+-..+..++||.|.+-|+-.+.+. .|-++++.+++.. .|....
T Consensus 398 -----------tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs-----------TLKvw~V~tkKl~~DLpGh~---- 451 (480)
T KOG0271|consen 398 -----------TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS-----------TLKVWDVRTKKLKQDLPGHA---- 451 (480)
T ss_pred -----------CcchhhhhhhccceeEEEEeccCccEEEEcCCCc-----------eEEEEEeeeeeecccCCCCC----
Confidence 3334444555566789999999998776555443 4778888776642 222222
Q ss_pred eceecCCCCCccccccCCCCCCccccCCCEEE
Q 005093 317 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 348 (715)
Q Consensus 317 ~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~ 348 (715)
..+..+.|+|||..+.
T Consensus 452 ----------------DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 452 ----------------DEVFAVDWSPDGQRVA 467 (480)
T ss_pred ----------------ceEEEEEecCCCceee
Confidence 2345678999998653
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-08 Score=97.19 Aligned_cols=235 Identities=16% Similarity=0.132 Sum_probs=129.2
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhh--h---cCC-----C
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL--Q---SLP-----G 534 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~--~---~~~-----~ 534 (715)
.+-.++.|+.- ..+.+|++|.+.|.+..........++..|+++|+..+.+..+- ||..-. + .+. .
T Consensus 77 a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Py---yg~RkP~~Q~~s~l~~VsDl~ 152 (348)
T PF09752_consen 77 ARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPY---YGQRKPKDQRRSSLRNVSDLF 152 (348)
T ss_pred eEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEeccc---ccccChhHhhcccccchhHHH
Confidence 34457778754 34668999999995544333333445777888899999988654 332210 0 000 0
Q ss_pred CCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc-c-CCCCCCceee
Q 005093 535 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-G-TTDIPDWCYV 612 (715)
Q Consensus 535 ~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~-~-~~~~~~~~~~ 612 (715)
..+...+.++...++|+.++++ .+++|.|.||||.+|.++++..|..+..+-++++...-..+. + ......|...
T Consensus 153 ~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W~~L 229 (348)
T PF09752_consen 153 VMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINWDAL 229 (348)
T ss_pred HHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCHHHH
Confidence 0123346788889999999963 689999999999999999999988766655555432211000 0 0111112110
Q ss_pred ecc-CC--------------CCCCCCCCCCChhhHHHH----HhcCchhhccCCCCc-----EEEEeeCCCCcCCchHHH
Q 005093 613 ESY-GS--------------KGKDSFTESPSVEDLTRF----HSKSPISHISKVKTP-----TIFLLGAQDLRVPVSNGL 668 (715)
Q Consensus 613 ~~~-~~--------------~~~~~~~~~~~~~~~~~~----~~~sp~~~~~~i~~P-----~Lii~G~~D~~v~~~~~~ 668 (715)
..- .. ...............+.. ..++-..++.+..+| +.++.+++|..||..+..
T Consensus 230 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v~ 309 (348)
T PF09752_consen 230 EKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRHGVL 309 (348)
T ss_pred HHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechhhcc
Confidence 000 00 000000000000111111 111222334444433 788999999999877666
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 669 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 669 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
.+.+.. ..+++..+++ ||.-..-.....+.+.|.+=|+
T Consensus 310 ~Lq~~W----PGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 310 SLQEIW----PGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred hHHHhC----CCCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 544443 3466777877 9974443334455566666543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-06 Score=91.20 Aligned_cols=242 Identities=12% Similarity=0.105 Sum_probs=124.6
Q ss_pred eEEEEecCCCCCCeEEEEecCCccEEEEecC--ccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC
Q 005093 56 KLLVVRNPENESPIQFELWSQSQLEKEFHVP--QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 133 (715)
Q Consensus 56 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 133 (715)
..+|+.+..++.-.+|.+..+|+.+.+-... ... ..+.+||||++|+.....
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~----------~~l~~spd~~~lyv~~~~---------------- 55 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQV----------QPMVISPDKRHLYVGVRP---------------- 55 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCC----------ccEEECCCCCEEEEEECC----------------
Confidence 3467776543444455554345443332222 222 688999999988664321
Q ss_pred CCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc-CCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccc
Q 005093 134 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR 212 (715)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~ 212 (715)
...|.+++++ +|+.+.+...+.......+.++|||+. |+.+. ..
T Consensus 56 ---------------------------~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~----l~v~~-~~--- 100 (330)
T PRK11028 56 ---------------------------EFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRF----LFSAS-YN--- 100 (330)
T ss_pred ---------------------------CCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCE----EEEEE-cC---
Confidence 1346666664 455443311111223567899999996 54443 11
Q ss_pred eeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eec--CCCCccccceeEcCCCCeEEEEecCCCCCCCCc
Q 005093 213 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 289 (715)
Q Consensus 213 ~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l--t~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~ 289 (715)
...|.+++++ ..+.. +.+ ...........++|||++|+......
T Consensus 101 ----------~~~v~v~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~------- 147 (330)
T PRK11028 101 ----------ANCVSVSPLD----------------KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE------- 147 (330)
T ss_pred ----------CCeEEEEEEC----------------CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC-------
Confidence 2357777761 12211 111 11122345578999999886555432
Q ss_pred cccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 005093 290 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 369 (715)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~ 369 (715)
..|+++|+.+.+. +.........+ .. + .++..+.|+|||+++|......+...+|.++..+++.
T Consensus 148 ---~~v~v~d~~~~g~--l~~~~~~~~~~---~~-g-------~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 148 ---DRIRLFTLSDDGH--LVAQEPAEVTT---VE-G-------AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred ---CEEEEEEECCCCc--ccccCCCceec---CC-C-------CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 3588899876332 11000000000 00 0 1345678999999777765545555666666545554
Q ss_pred EEec---C--CC--C-Cc-eeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 370 LRIT---P--AE--S-NF-SWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 370 ~~l~---~--~~--~-~~-~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
+.+. . .. + .. ....++++++.++..... ...|.++++.
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~---~~~I~v~~i~ 258 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT---ASLISVFSVS 258 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC---CCeEEEEEEe
Confidence 3321 1 10 0 01 124577888877765322 2346566654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.1e-08 Score=105.39 Aligned_cols=169 Identities=10% Similarity=0.063 Sum_probs=110.2
Q ss_pred ccceEEeeCCCCceEEEEecC----CCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 43 TGASAVVPSPSGSKLLVVRNP----ENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
..+..+++||||+++||+... ++...++|....++..++++.... . ..++|||||++|+|+++..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~-~----------t~PsWspDG~~lw~v~dg~ 418 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHS-L----------TRPSWSLDADAVWVVVDGN 418 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCC-C----------CCceECCCCCceEEEecCc
Confidence 457899999999999999842 113457777776666677664322 3 7999999999999986532
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCC
Q 005093 119 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
.. .+... .....+++++++++++.++ . .. ..+..++|||||++
T Consensus 419 ~~--------------------------~~v~~------~~~~gql~~~~vd~ge~~~-~-~~--g~Issl~wSpDG~R- 461 (591)
T PRK13616 419 TV--------------------------VRVIR------DPATGQLARTPVDASAVAS-R-VP--GPISELQLSRDGVR- 461 (591)
T ss_pred ce--------------------------EEEec------cCCCceEEEEeccCchhhh-c-cC--CCcCeEEECCCCCE-
Confidence 10 00000 0023689999999888764 1 12 34889999999999
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEE---EecccccchhhhhhhhccCCCCCCcee------cCCCCcc-ccceeE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYA---VRVSLYKSEASELELKESSSEDLPVVN------LTESISS-AFFPRF 268 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------lt~~~~~-~~~~~~ 268 (715)
|+|... .+||+ +.. .+|+ .. |+..... ..++.|
T Consensus 462 ---iA~i~~----------------g~v~Va~Vvr~-----------------~~G~-~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 462 ---AAMIIG----------------GKVYLAVVEQT-----------------EDGQ-YALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred ---EEEEEC----------------CEEEEEEEEeC-----------------CCCc-eeecccEEeecccCCccccceE
Confidence 999861 15665 332 3444 33 3333333 577999
Q ss_pred cCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC
Q 005093 269 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 306 (715)
Q Consensus 269 spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~ 306 (715)
..|++ |+..... ....+|.+++++....
T Consensus 505 ~~~~~-L~V~~~~---------~~~~v~~v~vDG~~~~ 532 (591)
T PRK13616 505 RTGDS-LVVGRSD---------PEHPVWYVNLDGSNSD 532 (591)
T ss_pred ecCCE-EEEEecC---------CCCceEEEecCCcccc
Confidence 99998 5544332 1245899998875543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-06 Score=87.98 Aligned_cols=211 Identities=16% Similarity=0.144 Sum_probs=116.0
Q ss_pred CCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCC--------ccEEEEecCccccccccCCCcccceeecCCC
Q 005093 37 PFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS--------QLEKEFHVPQTVHGSVYADGWFEGISWNSDE 108 (715)
Q Consensus 37 ~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg 108 (715)
+|+.-.|.+...+|++||++|+-+-+.. ++-...-+|+.| ..+++-.+..... .+|.-..=|.|+
T Consensus 98 ef~v~aG~I~Di~Wd~ds~RI~avGEGr-erfg~~F~~DSG~SvGei~GhSr~ins~~~Kps------RPfRi~T~sdDn 170 (603)
T KOG0318|consen 98 EFQVLAGPIKDISWDFDSKRIAAVGEGR-ERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS------RPFRIATGSDDN 170 (603)
T ss_pred eeeecccccccceeCCCCcEEEEEecCc-cceeEEEEecCCCccceeeccceeEeeeeccCC------CceEEEeccCCC
Confidence 3444458899999999999999887654 333344455332 2222222221111 122334444444
Q ss_pred CeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccC-ceEEEEEccCCceEeec--CCCCCCc
Q 005093 109 TLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQ-PSLFVININSGEVQAVK--GIPKSLS 185 (715)
Q Consensus 109 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~g~~~~l~--~~~~~~~ 185 (715)
.++|.--. +.+.-....+.....+..+|.|| |+.++..+. ..++++|-++|+..-.- .......
T Consensus 171 -~v~ffeGP-----------PFKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGs 237 (603)
T KOG0318|consen 171 -TVAFFEGP-----------PFKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGS 237 (603)
T ss_pred -eEEEeeCC-----------CeeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCcccc
Confidence 35554221 12222333344556778889999 777765554 78999999998865431 1122346
Q ss_pred cceEEEecCCCCCccEEEEEeecCc----------------------cceeeeeeeecCCceEEEEecccccchhhhhhh
Q 005093 186 VGQVVWAPLNEGLHQYLVFVGWSSE----------------------TRKLGIKYCYNRPCALYAVRVSLYKSEASELEL 243 (715)
Q Consensus 186 ~~~~~~spdg~~~~~~i~~~~~~~~----------------------~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 243 (715)
+..++||||+++ ++..+.... +...|--| .+.+|..+.+.++ |+.
T Consensus 238 IfalsWsPDs~~----~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW---qkd~lItVSl~G~------in~ 304 (603)
T KOG0318|consen 238 IFALSWSPDSTQ----FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW---QKDHLITVSLSGT------INY 304 (603)
T ss_pred EEEEEECCCCce----EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE---eCCeEEEEEcCcE------EEE
Confidence 778999999999 887653221 11222222 1234555543110 000
Q ss_pred hccCCCCCCceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 244 KESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 244 ~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
.... .......+..+...+.....||||++|+-.+.+
T Consensus 305 ln~~-d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 305 LNPS-DPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred eccc-CCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 0000 111233444556678889999999988766654
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=100.49 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=85.8
Q ss_pred CceEEEEEEecCCCCC---CCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC---
Q 005093 462 QKPFEAIFVSSSHKKD---CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--- 535 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~---~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~--- 535 (715)
+.++...++.|..... ..+.|+|++-||.+.. ...|...++.+++.||+|..++++|+..-+.......+..
T Consensus 49 ~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p 126 (365)
T COG4188 49 DRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAP 126 (365)
T ss_pred CCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccch
Confidence 5566777888875422 2478999999995443 5578888999999999999999998653222221112111
Q ss_pred -CCccchhhHHHHHHHHHHc---C----CCCCceEEEEEeChhHHHHHHHHhhCC
Q 005093 536 -VGSQDVNDVLTAIDHVIDM---G----LANPSKVTVVGGSHGGFLTTHLIGQAP 582 (715)
Q Consensus 536 -~~~~~~~d~~~~i~~l~~~---~----~~d~~~i~l~G~S~GG~~a~~~a~~~p 582 (715)
.......|+...+++|.+. + .+|..+|+++|||+||+.++.++....
T Consensus 127 ~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 127 AEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred hhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 1112367888888888887 4 378999999999999999998876544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.6e-08 Score=89.74 Aligned_cols=150 Identities=17% Similarity=0.244 Sum_probs=93.3
Q ss_pred cceEEeeCCCCceEEEEecCC--C------CCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEe
Q 005093 44 GASAVVPSPSGSKLLVVRNPE--N------ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 115 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~ 115 (715)
......|+|+|++|++....+ + +...+|.+...+.......+... +.+..++|||+|+++|.+.
T Consensus 7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~--------~~I~~~~WsP~g~~favi~ 78 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE--------GPIHDVAWSPNGNEFAVIY 78 (194)
T ss_pred ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC--------CceEEEEECcCCCEEEEEE
Confidence 346679999999999987632 1 23356666533333333333221 1237999999999998874
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCC
Q 005093 116 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLN 195 (715)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg 195 (715)
... ...+.++|+++.....+ .......+.|||+|
T Consensus 79 g~~------------------------------------------~~~v~lyd~~~~~i~~~----~~~~~n~i~wsP~G 112 (194)
T PF08662_consen 79 GSM------------------------------------------PAKVTLYDVKGKKIFSF----GTQPRNTISWSPDG 112 (194)
T ss_pred ccC------------------------------------------CcccEEEcCcccEeEee----cCCCceEEEECCCC
Confidence 311 13577788865544444 12344578999999
Q ss_pred CCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeE
Q 005093 196 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 275 (715)
Q Consensus 196 ~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l 275 (715)
+. |+..+.. +..++|..+|. ...+..... +........|||||++|
T Consensus 113 ~~----l~~~g~~------------n~~G~l~~wd~-----------------~~~~~i~~~-~~~~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 113 RF----LVLAGFG------------NLNGDLEFWDV-----------------RKKKKISTF-EHSDATDVEWSPDGRYL 158 (194)
T ss_pred CE----EEEEEcc------------CCCcEEEEEEC-----------------CCCEEeecc-ccCcEEEEEEcCCCCEE
Confidence 98 8887521 22346888886 322222222 22346789999999999
Q ss_pred EEEecC
Q 005093 276 VFLSAK 281 (715)
Q Consensus 276 ~~~~~~ 281 (715)
+.....
T Consensus 159 ~ta~t~ 164 (194)
T PF08662_consen 159 ATATTS 164 (194)
T ss_pred EEEEec
Confidence 877654
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.8e-08 Score=102.76 Aligned_cols=121 Identities=16% Similarity=0.201 Sum_probs=78.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc-
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 540 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~---~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~- 540 (715)
++.+-|.|... ...+.| ||+++....... -..-..++++|.++||.|+++|.+..+. . ...++..+
T Consensus 201 ~eLiqY~P~te-~v~~~P-LLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~---~-----~r~~~ldDY 270 (560)
T TIGR01839 201 LELIQYKPITE-QQHARP-LLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDK---A-----HREWGLSTY 270 (560)
T ss_pred eEEEEeCCCCC-CcCCCc-EEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCCh---h-----hcCCCHHHH
Confidence 44456666521 122344 666776322111 1122457899999999999999987322 1 11222112
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHH----HHhhCCC-ceeEEEecCCcchh
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH----LIGQAPD-KFVAAAARNPLCNL 597 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~----~a~~~p~-~~~~~v~~~~~~~~ 597 (715)
++.+.++|+.+.+. ...++|.++|+|+||.+++. +++++++ +++.++++...+|+
T Consensus 271 v~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf 330 (560)
T TIGR01839 271 VDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDS 330 (560)
T ss_pred HHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeeccccc
Confidence 34666777777766 34688999999999999996 6777785 79999988877764
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-07 Score=102.70 Aligned_cols=180 Identities=12% Similarity=0.063 Sum_probs=112.1
Q ss_pred cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEee
Q 005093 98 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV 177 (715)
Q Consensus 98 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l 177 (715)
....+..||||++++|+....... .+ ...+||+++. +++.+++
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~-------------------------------~d-----~~s~Lwv~~~-gg~~~~l 393 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGA-------------------------------PD-----PASSLWVGPL-GGVAVQV 393 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCC-------------------------------CC-----cceEEEEEeC-CCcceee
Confidence 347999999999999987532110 00 2478999997 4555777
Q ss_pred cCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecC
Q 005093 178 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 257 (715)
Q Consensus 178 ~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 257 (715)
+.+. ....++|||||+. |+|..+.. +..+........+||.+++ .+++.+.
T Consensus 394 --t~g~-~~t~PsWspDG~~----lw~v~dg~---~~~~v~~~~~~gql~~~~v-----------------d~ge~~~-- 444 (591)
T PRK13616 394 --LEGH-SLTRPSWSLDADA----VWVVVDGN---TVVRVIRDPATGQLARTPV-----------------DASAVAS-- 444 (591)
T ss_pred --ecCC-CCCCceECCCCCc----eEEEecCc---ceEEEeccCCCceEEEEec-----------------cCchhhh--
Confidence 3444 3778999999999 99886421 1111111123458998886 6666655
Q ss_pred CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEe---eecCCCCCCCcccceeeeeeceecCCCCCccccccCC
Q 005093 258 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR---IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 334 (715)
Q Consensus 258 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~---~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~ 334 (715)
...+.+.+++|||||++|+|+... +||+ .....|. ..++... .+... ....
T Consensus 445 ~~~g~Issl~wSpDG~RiA~i~~g------------~v~Va~Vvr~~~G~-~~l~~~~----~l~~~---------l~~~ 498 (591)
T PRK13616 445 RVPGPISELQLSRDGVRAAMIIGG------------KVYLAVVEQTEDGQ-YALTNPR----EVGPG---------LGDT 498 (591)
T ss_pred ccCCCcCeEEECCCCCEEEEEECC------------EEEEEEEEeCCCCc-eeecccE----Eeecc---------cCCc
Confidence 344568999999999999998821 4776 4433433 4443211 11000 0011
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 005093 335 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 371 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 371 (715)
...+.|..+++ |+.... .+...+|.+++++...+.
T Consensus 499 ~~~l~W~~~~~-L~V~~~-~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 499 AVSLDWRTGDS-LVVGRS-DPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred cccceEecCCE-EEEEec-CCCCceEEEecCCccccc
Confidence 34678999987 554433 455678999997554443
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-08 Score=92.50 Aligned_cols=207 Identities=15% Similarity=0.088 Sum_probs=106.6
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC--
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL-- 556 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~-- 556 (715)
.+..++.|-|-|+... .|..+...|-. -+.++.+.++| .|..+. ..-..|+.+.++.+.....
T Consensus 6 ~~~~L~cfP~AGGsa~---~fr~W~~~lp~-~iel~avqlPG---R~~r~~--------ep~~~di~~Lad~la~el~~~ 70 (244)
T COG3208 6 ARLRLFCFPHAGGSAS---LFRSWSRRLPA-DIELLAVQLPG---RGDRFG--------EPLLTDIESLADELANELLPP 70 (244)
T ss_pred CCceEEEecCCCCCHH---HHHHHHhhCCc-hhheeeecCCC---cccccC--------CcccccHHHHHHHHHHHhccc
Confidence 3444566666665443 34444444422 58899999999 433321 1124455555555554321
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCC---CceeEEEecCCcch-hhhhccCCCCCCceeeeccCCCCCCCCCCCCC--hh
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN-LALMVGTTDIPDWCYVESYGSKGKDSFTESPS--VE 630 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 630 (715)
....+++++||||||.+|..+|.+.- ....+..+.+.... ...........+-.+.. ....+.+.+. .+
T Consensus 71 ~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~-----~l~~lgG~p~e~le 145 (244)
T COG3208 71 LLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLA-----DLVDLGGTPPELLE 145 (244)
T ss_pred cCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHH-----HHHHhCCCChHHhc
Confidence 33468999999999999999886531 11233332221110 00000000011000000 0111222221 12
Q ss_pred hHHHHHhcCch-----------hh--ccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCC
Q 005093 631 DLTRFHSKSPI-----------SH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 697 (715)
Q Consensus 631 ~~~~~~~~sp~-----------~~--~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 697 (715)
+.+.+.-.-|+ .+ -..+.+|+.++.|++|..|..++...+.+.. +...++.+|+| ||.+.. +
T Consensus 146 d~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t---~~~f~l~~fdG-gHFfl~-~ 220 (244)
T COG3208 146 DPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHT---KGDFTLRVFDG-GHFFLN-Q 220 (244)
T ss_pred CHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhh---cCCceEEEecC-cceehh-h
Confidence 22222222221 11 1367899999999999999776665555554 34688999986 897653 3
Q ss_pred chHHHHHHHHHHH
Q 005093 698 SDFESFLNIGLWF 710 (715)
Q Consensus 698 ~~~~~~~~i~~wl 710 (715)
...++...|.+.+
T Consensus 221 ~~~~v~~~i~~~l 233 (244)
T COG3208 221 QREEVLARLEQHL 233 (244)
T ss_pred hHHHHHHHHHHHh
Confidence 3334555555544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.4e-07 Score=96.07 Aligned_cols=261 Identities=13% Similarity=0.150 Sum_probs=148.9
Q ss_pred CCCCceEEEEecCCCCCC-eEEEEe-c--CCcc-EEEEecCccc-cc-cccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 005093 51 SPSGSKLLVVRNPENESP-IQFELW-S--QSQL-EKEFHVPQTV-HG-SVYADGWFEGISWNSDETLIAYVAEEPSPSKP 123 (715)
Q Consensus 51 Spdg~~la~~~~~~~~~~-~~~~~~-~--~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 123 (715)
...|.+..|....++... .++... . +|.. +.+++..... .+ .+ ....+++||||++|||.....+
T Consensus 75 ~~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~----~~~~~~~Spdg~~la~~~s~~G---- 146 (414)
T PF02897_consen 75 VRRGGYYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYV----SLGGFSVSPDGKRLAYSLSDGG---- 146 (414)
T ss_dssp EEETTEEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-E----EEEEEEETTTSSEEEEEEEETT----
T ss_pred EEECCeEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCceE----EeeeeeECCCCCEEEEEecCCC----
Confidence 347778888876653333 344444 2 3444 5556543211 11 11 1247889999999999876542
Q ss_pred CccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEE
Q 005093 124 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 203 (715)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~ 203 (715)
. ....|+++|+++|+...- .-.......+.|++||+. ++
T Consensus 147 ------------------------------~-----e~~~l~v~Dl~tg~~l~d--~i~~~~~~~~~W~~d~~~----~~ 185 (414)
T PF02897_consen 147 ------------------------------S-----EWYTLRVFDLETGKFLPD--GIENPKFSSVSWSDDGKG----FF 185 (414)
T ss_dssp ------------------------------S-----SEEEEEEEETTTTEEEEE--EEEEEESEEEEECTTSSE----EE
T ss_pred ------------------------------C-----ceEEEEEEECCCCcCcCC--cccccccceEEEeCCCCE----EE
Confidence 1 247899999999975432 111112223899999999 99
Q ss_pred EEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce--ecCCCCcc---ccceeEcCCCCeEEEE
Q 005093 204 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV--NLTESISS---AFFPRFSPDGKFLVFL 278 (715)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~lt~~~~~---~~~~~~spdg~~l~~~ 278 (715)
|+......+.. ..+...+||++.+ .+.... .+..+... ......|+||++|+..
T Consensus 186 y~~~~~~~~~~----~~~~~~~v~~~~~-----------------gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~ 244 (414)
T PF02897_consen 186 YTRFDEDQRTS----DSGYPRQVYRHKL-----------------GTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFIS 244 (414)
T ss_dssp EEECSTTTSS-----CCGCCEEEEEEET-----------------TS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred EEEeCcccccc----cCCCCcEEEEEEC-----------------CCChHhCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence 98865432200 1123568999997 333332 34333222 3467889999999887
Q ss_pred ecCCCCCCCCccccceeEeeecCCCC-----CCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNG-----NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 353 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~-----~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~ 353 (715)
+.... . ...+|++++..+. .+.+.... ++ .... ....|..+++.++.
T Consensus 245 ~~~~~------~-~s~v~~~d~~~~~~~~~~~~~l~~~~-----------~~---------~~~~-v~~~~~~~yi~Tn~ 296 (414)
T PF02897_consen 245 SSSGT------S-ESEVYLLDLDDGGSPDAKPKLLSPRE-----------DG---------VEYY-VDHHGDRLYILTND 296 (414)
T ss_dssp EESSS------S-EEEEEEEECCCTTTSS-SEEEEEESS-----------SS----------EEE-EEEETTEEEEEE-T
T ss_pred EEccc------c-CCeEEEEeccccCCCcCCcEEEeCCC-----------Cc---------eEEE-EEccCCEEEEeeCC
Confidence 77642 2 4689999998751 12221111 11 0000 11125567777764
Q ss_pred C-CeeEEEEEECCCCc---EE-EecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 354 G-SSQVIISVNVSSGE---LL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 354 ~-~~~~l~~~d~~tg~---~~-~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
+ ...+|+.+++++.. .. .+...........++..++.|++...... -++|.++++.
T Consensus 297 ~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~~~~ 357 (414)
T PF02897_consen 297 DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG-SSRLRVYDLD 357 (414)
T ss_dssp T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT-EEEEEEEETT
T ss_pred CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC-ccEEEEEECC
Confidence 3 46789999998765 33 45554444455677788888887665444 4568888876
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=101.92 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=77.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchH-HHH-HHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSK-SLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~-~~~-~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
...|++|++||..... ...|.. +.. ++...+|.|+++|+++..... ..... .. .....+++.+++++|.+...
T Consensus 34 ~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~-~~-~~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANPN--YPQAV-NN-TRVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECccccccC--hHHHH-Hh-HHHHHHHHHHHHHHHHHhcC
Confidence 4578999999955443 134433 333 344578999999998742110 00000 00 01113567788888887755
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcch
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 596 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~ 596 (715)
++.++|.|+|||+||+++..++.+.|++++.++++.|...
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 6778999999999999999999999999999999987643
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=103.69 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=76.5
Q ss_pred CCcEEEEEcCCCCCCCCccchH-HHHHHH--hCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSK-SLAFLS--SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~-~~~~la--~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
..|++|++||.........|.. +...|. +..|.|+++|++| +|.+...... ........++.+.+++|.+...
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g---~g~s~y~~a~-~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLS---RAQQHYPTSA-AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCC---cCCCCCcccc-ccHHHHHHHHHHHHHHHHHhhC
Confidence 4689999999554322234544 444443 2369999999998 4432211000 1111123567777888876544
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
++.+++.|+||||||.+|..++..+|.++.+++++.|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 677899999999999999999998899999999998854
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.9e-08 Score=95.14 Aligned_cols=100 Identities=25% Similarity=0.383 Sum_probs=65.2
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHH---hCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLS---SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la---~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
.|.|+++||.+... ..|......+. .. |.|+.+|+|| +|.+. . . ........+.+..+.+..
T Consensus 21 ~~~i~~~hg~~~~~--~~~~~~~~~~~~~~~~-~~~~~~d~~g---~g~s~-~----~--~~~~~~~~~~~~~~~~~~-- 85 (282)
T COG0596 21 GPPLVLLHGFPGSS--SVWRPVFKVLPALAAR-YRVIAPDLRG---HGRSD-P----A--GYSLSAYADDLAALLDAL-- 85 (282)
T ss_pred CCeEEEeCCCCCch--hhhHHHHHHhhccccc-eEEEEecccC---CCCCC-c----c--cccHHHHHHHHHHHHHHh--
Confidence 45899999976553 23333222222 23 9999999998 54443 0 0 111222233444444432
Q ss_pred CCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
...++.++|||+||.+++.++.++|++++++++.++..
T Consensus 86 ~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 86 GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 23449999999999999999999999999999988654
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.6e-07 Score=82.45 Aligned_cols=236 Identities=14% Similarity=0.131 Sum_probs=140.3
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (715)
..+.+.++|++..+.+++ ..|-....++....|--||++++-.+++ +...+|.+.. -...++.+....+
T Consensus 59 ~~qhvRlyD~~S~np~Pv----~t~e~h~kNVtaVgF~~dgrWMyTgseD--gt~kIWdlR~-~~~qR~~~~~spV---- 127 (311)
T KOG0315|consen 59 GNQHVRLYDLNSNNPNPV----ATFEGHTKNVTAVGFQCDGRWMYTGSED--GTVKIWDLRS-LSCQRNYQHNSPV---- 127 (311)
T ss_pred cCCeeEEEEccCCCCCce----eEEeccCCceEEEEEeecCeEEEecCCC--ceEEEEeccC-cccchhccCCCCc----
Confidence 445788899998887543 1222334789999999999999644333 4444444432 2334455544444
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 173 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 173 (715)
+.+...|+-..|+.. + ...+|++||+....
T Consensus 128 ------n~vvlhpnQteLis~-d-------------------------------------------qsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 128 ------NTVVLHPNQTELISG-D-------------------------------------------QSGNIRVWDLGENS 157 (311)
T ss_pred ------ceEEecCCcceEEee-c-------------------------------------------CCCcEEEEEccCCc
Confidence 788888987777552 1 23679999997663
Q ss_pred -eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 174 -VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 174 -~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
...+. ......+..+...|||+. ++-.. ..+..|+.++.. .+..+. -..
T Consensus 158 c~~~li-Pe~~~~i~sl~v~~dgsm----l~a~n---------------nkG~cyvW~l~~-~~~~s~---------l~P 207 (311)
T KOG0315|consen 158 CTHELI-PEDDTSIQSLTVMPDGSM----LAAAN---------------NKGNCYVWRLLN-HQTASE---------LEP 207 (311)
T ss_pred cccccC-CCCCcceeeEEEcCCCcE----EEEec---------------CCccEEEEEccC-CCcccc---------ceE
Confidence 34442 344457888999999997 66443 223577777610 000000 011
Q ss_pred ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCC--CCCCcccceeeeeeceecCCCCCcccc
Q 005093 253 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN--GNFSSLEKIVDVIPVVQCAEGDCFPGL 330 (715)
Q Consensus 253 ~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~--~~~~lt~~~~~~~~~~~~~~~~~~~g~ 330 (715)
.+++....+.+..-.+|||+|+||-.+.+. .+++++.++- ..+.++..+
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdk-----------tv~iwn~~~~~kle~~l~gh~------------------ 258 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDK-----------TVKIWNTDDFFKLELVLTGHQ------------------ 258 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCc-----------eEEEEecCCceeeEEEeecCC------------------
Confidence 223344566788889999999999887764 3666665542 112222221
Q ss_pred ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 005093 331 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 331 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
.-....+||.||++| ++...+...+|| ++..++..+...
T Consensus 259 --rWvWdc~FS~dg~Yl-vTassd~~~rlW--~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 259 --RWVWDCAFSADGEYL-VTASSDHTARLW--DLSAGKEVRQYQ 297 (311)
T ss_pred --ceEEeeeeccCccEE-EecCCCCceeec--ccccCceeeecC
Confidence 012355789999855 555545666776 555566554443
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.6e-08 Score=90.99 Aligned_cols=191 Identities=20% Similarity=0.239 Sum_probs=117.0
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC----------------CCCCC---
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL----------------PGKVG--- 537 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~----------------~~~~~--- 537 (715)
.+.++|+|||-||-+.. ..-|.....-||.+||+|.++..|.....-.-..... ..+-.
T Consensus 114 k~~k~PvvvFSHGLggs--Rt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLGGS--RTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCCccEEEEecccccc--hhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 46789999999995544 3467788889999999999999987432111000000 00000
Q ss_pred ------ccchhhHHHHHHHHHHc---------------------CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEe
Q 005093 538 ------SQDVNDVLTAIDHVIDM---------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 590 (715)
Q Consensus 538 ------~~~~~d~~~~i~~l~~~---------------------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 590 (715)
...+.++..|+.-|.+- +.+|..+++++|||+||..++...+.+ ..|+++|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeee
Confidence 11245677777666542 125678899999999999888777764 46999997
Q ss_pred cCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHH
Q 005093 591 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 670 (715)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~ 670 (715)
..++. + |... ....+.+.|+|+|.-+ |... -+....
T Consensus 271 lD~WM---------------~---------------Pl~~-----------~~~~~arqP~~finv~-~fQ~--~en~~v 306 (399)
T KOG3847|consen 271 LDAWM---------------F---------------PLDQ-----------LQYSQARQPTLFINVE-DFQW--NENLLV 306 (399)
T ss_pred eeeee---------------c---------------ccch-----------hhhhhccCCeEEEEcc-cccc--hhHHHH
Confidence 76632 1 1000 1223456788888733 3222 233444
Q ss_pred HHHHHHcCCcEEEEEeCCCCccCCC---------------------C-CchHHHHHHHHHHHHHhc
Q 005093 671 ARALREKGVETKVIVFPNDVHGIER---------------------P-QSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 671 ~~~l~~~g~~~~~~~~~~~~H~~~~---------------------~-~~~~~~~~~i~~wl~~~l 714 (715)
.+.....+..-.++.+.|+-|.-.. + +......+..++||++|+
T Consensus 307 mKki~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~ 372 (399)
T KOG3847|consen 307 MKKIESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHL 372 (399)
T ss_pred HHhhhCCCccceEEEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhh
Confidence 5555555555567888888884211 1 112335567888998875
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.6e-08 Score=88.75 Aligned_cols=221 Identities=12% Similarity=0.114 Sum_probs=112.2
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc-
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS- 538 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~- 538 (715)
.+|..|+.|--.|++. ...+.|.||+..|.+ .....|..++.+|+..||.|+.+|.... -|.+... ...+..
T Consensus 10 ~~~~~I~vwet~P~~~-~~~~~~tiliA~Gf~--rrmdh~agLA~YL~~NGFhViRyDsl~H--vGlSsG~--I~eftms 82 (294)
T PF02273_consen 10 EDGRQIRVWETRPKNN-EPKRNNTILIAPGFA--RRMDHFAGLAEYLSANGFHVIRYDSLNH--VGLSSGD--INEFTMS 82 (294)
T ss_dssp TTTEEEEEEEE---TT-S---S-EEEEE-TT---GGGGGGHHHHHHHHTTT--EEEE---B-----------------HH
T ss_pred CCCCEEEEeccCCCCC-CcccCCeEEEecchh--HHHHHHHHHHHHHhhCCeEEEecccccc--ccCCCCC--hhhcchH
Confidence 4788899888888853 456678999999843 3355788899999999999999996531 1222110 111111
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCC
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 618 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (715)
...+++..+++||.+.+ ..+++|+..|.-|-+|...+++ . ...-+|...+++++.......-..++.....-..+
T Consensus 83 ~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i-~lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~lp 157 (294)
T PF02273_consen 83 IGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-I-NLSFLITAVGVVNLRDTLEKALGYDYLQLPIEQLP 157 (294)
T ss_dssp HHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGGS-GGG--
T ss_pred HhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-c-CcceEEEEeeeeeHHHHHHHHhccchhhcchhhCC
Confidence 22578889999999776 4779999999999999999885 4 36777777799887533211100000000000000
Q ss_pred CCCCCCCCCCh--hhHHHHH------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCC
Q 005093 619 GKDSFTESPSV--EDLTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 690 (715)
Q Consensus 619 ~~~~~~~~~~~--~~~~~~~------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 690 (715)
....+.+.... ....... ..+-...++.+.+|++..++.+|.+|...+..++...+. ...+++..++|+.
T Consensus 158 ~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~--s~~~klysl~Gs~ 235 (294)
T PF02273_consen 158 EDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNIN--SNKCKLYSLPGSS 235 (294)
T ss_dssp SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-T--T--EEEEEETT-S
T ss_pred CcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcC--CCceeEEEecCcc
Confidence 00000000000 0001111 112335677889999999999999997776666655543 2468899999999
Q ss_pred ccCC
Q 005093 691 HGIE 694 (715)
Q Consensus 691 H~~~ 694 (715)
|.+.
T Consensus 236 HdL~ 239 (294)
T PF02273_consen 236 HDLG 239 (294)
T ss_dssp S-TT
T ss_pred chhh
Confidence 9775
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-06 Score=81.01 Aligned_cols=267 Identities=13% Similarity=0.156 Sum_probs=151.5
Q ss_pred CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEec--CCccEEEEecCccccccccCCCcccceeecCCCCeEEEEe
Q 005093 38 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 115 (715)
Q Consensus 38 ~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~ 115 (715)
+..+.+.+....||+|+++|+-.+..+ ...+|+ +......+.++.. |+...++||.|+.+|...
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~TtnK~haipl~s~---------WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTTNKVHAIPLPSS---------WVMTCAYSPSGNFVACGG 116 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCC-----eEEEEEcccccceeEEecCce---------eEEEEEECCCCCeEEecC
Confidence 444558899999999999998765543 455662 3333333333322 558999999999998854
Q ss_pred ecCCCCCCCccCCCCC-C-----CCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceE
Q 005093 116 EEPSPSKPTFSLGSTK-G-----GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQV 189 (715)
Q Consensus 116 ~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 189 (715)
-+..-. .+.+.... . .........+..-..|..| +..+...+.....+||+++|+....- ......+-.+
T Consensus 117 LdN~Cs--iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~sl 192 (343)
T KOG0286|consen 117 LDNKCS--IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSL 192 (343)
T ss_pred cCceeE--EEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEe-cCCcccEEEE
Confidence 222111 11111110 0 0111122333333446655 55666667788999999999877652 2222346678
Q ss_pred EEec-CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeE
Q 005093 190 VWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRF 268 (715)
Q Consensus 190 ~~sp-dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~ 268 (715)
.++| |++. ++--+ .+ . ...+.|+ +.+.-.+....++..+..+.|
T Consensus 193 sl~p~~~nt----FvSg~-cD------------~--~aklWD~----------------R~~~c~qtF~ghesDINsv~f 237 (343)
T KOG0286|consen 193 SLSPSDGNT----FVSGG-CD------------K--SAKLWDV----------------RSGQCVQTFEGHESDINSVRF 237 (343)
T ss_pred ecCCCCCCe----EEecc-cc------------c--ceeeeec----------------cCcceeEeecccccccceEEE
Confidence 8999 8876 44322 11 1 2344454 255566677777888999999
Q ss_pred cCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEE
Q 005093 269 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 348 (715)
Q Consensus 269 spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~ 348 (715)
-|+|..++-.+.+. . ..++|+..+....+-... ... .++..+.||..|+ |+
T Consensus 238 fP~G~afatGSDD~---------t--cRlyDlRaD~~~a~ys~~------------~~~-----~gitSv~FS~SGR-lL 288 (343)
T KOG0286|consen 238 FPSGDAFATGSDDA---------T--CRLYDLRADQELAVYSHD------------SII-----CGITSVAFSKSGR-LL 288 (343)
T ss_pred ccCCCeeeecCCCc---------e--eEEEeecCCcEEeeeccC------------ccc-----CCceeEEEccccc-EE
Confidence 99998776444432 2 334566664432221111 000 1466888999998 55
Q ss_pred EEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeEEEeecC
Q 005093 349 LSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDG 388 (715)
Q Consensus 349 ~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~~~ 388 (715)
|....+ .....+|.-.++..-+..+.. -++-..+++||
T Consensus 289 fagy~d--~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG 327 (343)
T KOG0286|consen 289 FAGYDD--FTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG 327 (343)
T ss_pred EeeecC--CceeEeeccccceEEEeeccCCeeEEEEECCCC
Confidence 554333 355566765555554443322 23334555554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.4e-07 Score=89.59 Aligned_cols=233 Identities=12% Similarity=0.071 Sum_probs=143.9
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
++++..+|.|....|. +..-+ +.-++|.++ ......+...+..- ++....|+|+|+..+|.+.+
T Consensus 214 ~~I~sv~FHp~~plll-vaG~d-~~lrifqvDGk~N~~lqS~~l~~f---------Pi~~a~f~p~G~~~i~~s~r---- 278 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLL-VAGLD-GTLRIFQVDGKVNPKLQSIHLEKF---------PIQKAEFAPNGHSVIFTSGR---- 278 (514)
T ss_pred CCceEEEecCCCceEE-EecCC-CcEEEEEecCccChhheeeeeccC---------ccceeeecCCCceEEEeccc----
Confidence 6789999998876554 44443 556677766 32222222222111 23688999999966565432
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC--CCCCCccceEEEecCCCCCc
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG--IPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~--~~~~~~~~~~~~spdg~~~~ 199 (715)
+.-+|.||+.+.++.++.. .-.......|..|||++.
T Consensus 279 ---------------------------------------rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~f-- 317 (514)
T KOG2055|consen 279 ---------------------------------------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNF-- 317 (514)
T ss_pred ---------------------------------------ceEEEEeeccccccccccCCCCcccchhheeEecCCCCe--
Confidence 3679999999999988841 111224667889999998
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEe
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~ 279 (715)
|++.+ .++.|+++.. .+++...-..-++.+....||.||+.|+ ++
T Consensus 318 --ia~~G---------------~~G~I~lLha-----------------kT~eli~s~KieG~v~~~~fsSdsk~l~-~~ 362 (514)
T KOG2055|consen 318 --IAIAG---------------NNGHIHLLHA-----------------KTKELITSFKIEGVVSDFTFSSDSKELL-AS 362 (514)
T ss_pred --EEEcc---------------cCceEEeehh-----------------hhhhhhheeeeccEEeeEEEecCCcEEE-EE
Confidence 99887 4458998885 5555443334567789999999998775 44
Q ss_pred cCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 005093 280 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359 (715)
Q Consensus 280 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l 359 (715)
... .++|++|+..... +-...+ ++.. ....++.+.+|. ++.+.++.|-..|
T Consensus 363 ~~~----------GeV~v~nl~~~~~--~~rf~D----------~G~v------~gts~~~S~ng~-ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 363 GGT----------GEVYVWNLRQNSC--LHRFVD----------DGSV------HGTSLCISLNGS-YLATGSDSGIVNI 413 (514)
T ss_pred cCC----------ceEEEEecCCcce--EEEEee----------cCcc------ceeeeeecCCCc-eEEeccCcceEEE
Confidence 332 2699999877532 111111 1111 124567788997 5566777888888
Q ss_pred EEEEC--CCCcEEEecCCCC---CceeEEEeecCCEEEEEE
Q 005093 360 ISVNV--SSGELLRITPAES---NFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 360 ~~~d~--~tg~~~~l~~~~~---~~~~~~~s~~~~~l~~~~ 395 (715)
|-.+- .++..+++..-.- .++...|++|++-|...+
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 87542 2344444432211 244567888775444433
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-07 Score=92.93 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=72.6
Q ss_pred CCCcEEEEEcCCCCCCCCc--------cchH-HH---HHHHhCCcEEEEEcCCCCC-CC-chhhhhcCC----CCCCccc
Q 005093 479 SCDPLIVVLHGGPHSVSLS--------SYSK-SL---AFLSSVGYSLLIVNYRGSL-GF-GEEALQSLP----GKVGSQD 540 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~--------~~~~-~~---~~la~~G~~vi~~d~rG~~-~~-g~~~~~~~~----~~~~~~~ 540 (715)
.+..+||++|+-..+.... .|.. ++ ..+.-.-|-||++|..|+. +. |.+...... ..+....
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 5678999999933322111 1221 11 1233455999999988754 21 111111110 1223345
Q ss_pred hhhHHHHHHHHHHcCCCCCceEE-EEEeChhHHHHHHHHhhCCCceeEEEecCCc
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 594 (715)
+.|++++-+.|++.-.+ +++. ++|.||||+.++..+..+|+++..++.++..
T Consensus 129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~ 181 (368)
T COG2021 129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATA 181 (368)
T ss_pred HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheeccc
Confidence 78888888888777444 5665 9999999999999999999998887776653
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-07 Score=90.03 Aligned_cols=237 Identities=13% Similarity=0.096 Sum_probs=139.5
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEe-cCccccccccCCCcccceeecCC--CCeEEEEeecCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPS 119 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~wSpD--g~~la~~~~~~~ 119 (715)
..++...+|+|++.||-.+=. +...+|.+... .....+. ....+ ..+.|+|. +..||-.+.+
T Consensus 176 rPis~~~fS~ds~~laT~sws--G~~kvW~~~~~-~~~~~l~gH~~~v----------~~~~fhP~~~~~~lat~s~D-- 240 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWS--GLVKVWSVPQC-NLLQTLRGHTSRV----------GAAVFHPVDSDLNLATASAD-- 240 (459)
T ss_pred CcceeeEeecCCCeEEEeecC--CceeEeecCCc-ceeEEEeccccce----------eeEEEccCCCccceeeeccC--
Confidence 447788999999999855333 33344443333 3333332 22222 78999998 4556654332
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc-eEeecCCCCCCccceEEEecCCCCC
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
..+.+|++++.. +..++ -....+..++|.|+|+.
T Consensus 241 ------------------------------------------gtvklw~~~~e~~l~~l~--gH~~RVs~VafHPsG~~- 275 (459)
T KOG0272|consen 241 ------------------------------------------GTVKLWKLSQETPLQDLE--GHLARVSRVAFHPSGKF- 275 (459)
T ss_pred ------------------------------------------CceeeeccCCCcchhhhh--cchhhheeeeecCCCce-
Confidence 446777776643 33442 22346778999999998
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~ 278 (715)
|+..+ +.....||-+. ...+......+...+.+.+|.|||.-++-.
T Consensus 276 ---L~Tas-------------fD~tWRlWD~~------------------tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 276 ---LGTAS-------------FDSTWRLWDLE------------------TKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred ---eeecc-------------cccchhhcccc------------------cchhhHhhcccccccceeEecCCCceeecc
Confidence 87765 22223455444 333444445556678999999999955433
Q ss_pred ecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 358 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 358 (715)
+.+. ..+ ++|+.++....+..+ +...+..+.|+|+| +.+.+...++..+
T Consensus 322 GlD~---------~~R--vWDlRtgr~im~L~g-------------------H~k~I~~V~fsPNG-y~lATgs~Dnt~k 370 (459)
T KOG0272|consen 322 GLDS---------LGR--VWDLRTGRCIMFLAG-------------------HIKEILSVAFSPNG-YHLATGSSDNTCK 370 (459)
T ss_pred Cccc---------hhh--eeecccCcEEEEecc-------------------cccceeeEeECCCc-eEEeecCCCCcEE
Confidence 3322 122 457777654322111 11235678899999 4667776677777
Q ss_pred EEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEE
Q 005093 359 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 406 (715)
Q Consensus 359 l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~ 406 (715)
+|.+... .....+......++..-|++..+.++++ .+.++.-.||.
T Consensus 371 VWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~T-asyD~t~kiWs 416 (459)
T KOG0272|consen 371 VWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVT-ASYDNTVKIWS 416 (459)
T ss_pred Eeeeccc-ccceecccccchhhheEecccCCeEEEE-cccCcceeeec
Confidence 8766543 3344444444456667888866655544 45666666664
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.1e-06 Score=77.69 Aligned_cols=242 Identities=14% Similarity=0.073 Sum_probs=140.2
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCcc--EEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
+.+....++||++.||-.. ...+...+ ..+.. ...++.. .+.| ..+.|--||++++-.+++
T Consensus 41 sqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h---~kNV------taVgF~~dgrWMyTgseD-- 104 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGH---TKNV------TAVGFQCDGRWMYTGSED-- 104 (311)
T ss_pred cceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEecc---CCce------EEEEEeecCeEEEecCCC--
Confidence 5688889999999998652 23333333 33333 3333322 1222 789999999999775432
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCc
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
..+.+||+..-..+++ ......+..+...|+...
T Consensus 105 ------------------------------------------gt~kIWdlR~~~~qR~--~~~~spVn~vvlhpnQte-- 138 (311)
T KOG0315|consen 105 ------------------------------------------GTVKIWDLRSLSCQRN--YQHNSPVNTVVLHPNQTE-- 138 (311)
T ss_pred ------------------------------------------ceEEEEeccCcccchh--ccCCCCcceEEecCCcce--
Confidence 5688899877555555 344456778889997766
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecC-CCCccccceeEcCCCCeEEEE
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~~~~spdg~~l~~~ 278 (715)
|+... ...+|++.||. +..-...|. +....+.+....|||++|+-.
T Consensus 139 --Lis~d---------------qsg~irvWDl~----------------~~~c~~~liPe~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 139 --LISGD---------------QSGNIRVWDLG----------------ENSCTHELIPEDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred --EEeec---------------CCCcEEEEEcc----------------CCccccccCCCCCcceeeEEEcCCCcEEEEe
Confidence 54432 22478888972 332233444 444568999999999999755
Q ss_pred ecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 358 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 358 (715)
.++. ..|++++-++.... .+.++...+ .+..-+-...+|||+++|.. .+.+....
T Consensus 186 nnkG-----------~cyvW~l~~~~~~s------~l~P~~k~~-------ah~~~il~C~lSPd~k~lat-~ssdktv~ 240 (311)
T KOG0315|consen 186 NNKG-----------NCYVWRLLNHQTAS------ELEPVHKFQ-------AHNGHILRCLLSPDVKYLAT-CSSDKTVK 240 (311)
T ss_pred cCCc-----------cEEEEEccCCCccc------cceEhhhee-------cccceEEEEEECCCCcEEEe-ecCCceEE
Confidence 5542 48888887744311 112221111 11223346678999996644 43344455
Q ss_pred EEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEE
Q 005093 359 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 406 (715)
Q Consensus 359 l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~ 406 (715)
||..+--=+....+.....=.....||.||..|+..++. .-.+++-
T Consensus 241 iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd--~~~rlW~ 286 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD--HTARLWD 286 (311)
T ss_pred EEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC--Cceeecc
Confidence 655442212223334343323446889888777654333 4344543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.7e-06 Score=87.98 Aligned_cols=230 Identities=17% Similarity=0.144 Sum_probs=150.5
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEec-CCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
..+...+|+--|.||||-...= ....+|. ..+.--+-+ ++.... +..+..||||+.||-.+++
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~kl----gQLlVweWqsEsYVlKQ--QgH~~~------i~~l~YSpDgq~iaTG~eD---- 371 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKL----GQLLVWEWQSESYVLKQ--QGHSDR------ITSLAYSPDGQLIATGAED---- 371 (893)
T ss_pred ceeeEEEecccCCEEEEcCCcc----ceEEEEEeeccceeeec--cccccc------eeeEEECCCCcEEEeccCC----
Confidence 3477888888999999864421 1334452 111111111 111111 2689999999999886543
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE-eecCCCCCCccceEEEecCCCCCcc
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
..|-+||...|-=. .. +.....+..+.|+.+|+.
T Consensus 372 ----------------------------------------gKVKvWn~~SgfC~vTF--teHts~Vt~v~f~~~g~~--- 406 (893)
T KOG0291|consen 372 ----------------------------------------GKVKVWNTQSGFCFVTF--TEHTSGVTAVQFTARGNV--- 406 (893)
T ss_pred ----------------------------------------CcEEEEeccCceEEEEe--ccCCCceEEEEEEecCCE---
Confidence 45788888776422 22 455557889999999985
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCc-cccceeEcCCCCeEEEEe
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-SAFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-~~~~~~~spdg~~l~~~~ 279 (715)
++-++ .++.+-.+|+ ......+.+|.+.. ....++..|.|. |+++.
T Consensus 407 -llssS---------------LDGtVRAwDl----------------kRYrNfRTft~P~p~QfscvavD~sGe-lV~AG 453 (893)
T KOG0291|consen 407 -LLSSS---------------LDGTVRAWDL----------------KRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAG 453 (893)
T ss_pred -EEEee---------------cCCeEEeeee----------------cccceeeeecCCCceeeeEEEEcCCCC-EEEee
Confidence 54443 2235666776 24556677776544 466678888887 55665
Q ss_pred cCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 005093 280 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359 (715)
Q Consensus 280 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l 359 (715)
..+ ...|+++++++|+...+..+ +...+..++|+|+|. ++++.+++.+.++
T Consensus 454 ~~d---------~F~IfvWS~qTGqllDiLsG-------------------HEgPVs~l~f~~~~~-~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 454 AQD---------SFEIFVWSVQTGQLLDILSG-------------------HEGPVSGLSFSPDGS-LLASGSWDKTVRI 504 (893)
T ss_pred ccc---------eEEEEEEEeecCeeeehhcC-------------------CCCcceeeEEccccC-eEEeccccceEEE
Confidence 443 46799999999886433221 223456778999998 7788889988899
Q ss_pred EEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEe
Q 005093 360 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 396 (715)
Q Consensus 360 ~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~ 396 (715)
|-+=-..+.++.+..... +-...|.|+|.+|.....
T Consensus 505 W~if~s~~~vEtl~i~sd-vl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEIRSD-VLAVSFRPDGKELAVATL 540 (893)
T ss_pred EEeeccCceeeeEeeccc-eeEEEEcCCCCeEEEEEe
Confidence 987666677777765433 344689999999876653
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=8e-07 Score=85.76 Aligned_cols=217 Identities=15% Similarity=0.211 Sum_probs=120.4
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe---cCCccEEEEecCccccccccCC---CcccceeecCCCCeEEEEee
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYAD---GWFEGISWNSDETLIAYVAE 116 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~wSpDg~~la~~~~ 116 (715)
.++...+|=|-+....-+.=+ .-..+| ..+...+........+..|+-+ -.+..+.|.+||..++-.+-
T Consensus 141 rnvtclawRPlsaselavgCr-----~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCR-----AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred cceeEEEeccCCcceeeeeec-----ceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc
Confidence 568889999988765444322 235566 2222222211111112222111 14489999999998877543
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCC
Q 005093 117 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~ 196 (715)
. ...|.+||+++|...+|. ..+.....-+.|||||.
T Consensus 216 g-------------------------------------------sssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 216 G-------------------------------------------SSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGD 251 (445)
T ss_pred C-------------------------------------------cceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCC
Confidence 2 277999999999988883 12333456789999999
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEE
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~ 276 (715)
. +|.+..+.. ..+|-.+ +.-+.++-.-..+.+....|||+|++|.
T Consensus 252 ~-----lfaAt~dav------------frlw~e~------------------q~wt~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 252 V-----LFAATCDAV------------FRLWQEN------------------QSWTKERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred E-----EEEecccce------------eeeehhc------------------ccceecceeccCCceeeeeecCCCCEEE
Confidence 5 555532221 1344222 3333333333445788899999999999
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCCCCc-ccceeeeeeceecCCCCCccc--cccCCCCCCccccCCCEEEEEeee
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVVQCAEGDCFPG--LYSSSILSNPWLSDGCTMLLSSIW 353 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~l-t~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~dg~~l~~~~~~ 353 (715)
|+.... ..||.+..+......+ ..+...+..+.+-++-..-.| +-+.....++|.|.|.++.++...
T Consensus 297 f~~sgs----------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 297 FACSGS----------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred EEEcCC----------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 998764 3477666554332111 111122211111111000000 112355788999999988776553
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.5e-06 Score=77.13 Aligned_cols=229 Identities=17% Similarity=0.227 Sum_probs=129.9
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-c-CCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-S-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
..++..+|||.|++||-.+-.. ...+| + +++-+-+..+ .+..+.| ..++||++|.+||-.+.+
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~-----t~~Iw~k~~~efecv~~l-EGHEnEV------K~Vaws~sG~~LATCSRD--- 126 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDA-----TVVIWKKEDGEFECVATL-EGHENEV------KCVAWSASGNYLATCSRD--- 126 (312)
T ss_pred heeeeeeecCCCcEEEEeeccc-----eEEEeecCCCceeEEeee-eccccce------eEEEEcCCCCEEEEeeCC---
Confidence 5589999999999998765542 44566 3 3333332222 3332333 799999999999986432
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC--CCCCCccceEEEecCCCCC
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG--IPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~--~~~~~~~~~~~~spdg~~~ 198 (715)
..+|+|..+.+......+ .+....+-.+.|.|.-.
T Consensus 127 -----------------------------------------KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-- 163 (312)
T KOG0645|consen 127 -----------------------------------------KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-- 163 (312)
T ss_pred -----------------------------------------CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc--
Confidence 458888876544322110 23344577889999665
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-CceecCCCCccccceeEcCCCCeEEE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~spdg~~l~~ 277 (715)
|+|+...+. .-.+|.-+.+ ..- -...|...........|++.|.+|+-
T Consensus 164 ---lL~S~SYDn------------TIk~~~~~~d----------------ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s 212 (312)
T KOG0645|consen 164 ---LLFSCSYDN------------TIKVYRDEDD----------------DDWECVQTLDGHENTVWSLAFDNIGSRLVS 212 (312)
T ss_pred ---eeEEeccCC------------eEEEEeecCC----------------CCeeEEEEecCccceEEEEEecCCCceEEE
Confidence 677653211 1134433310 111 14456666667889999999999988
Q ss_pred EecCCCCCCC------CccccceeEeeecCCCCCCCcccceeeeeeceecCCC---CC------ccccccCCCCCCcccc
Q 005093 278 LSAKSSVDSG------AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG---DC------FPGLYSSSILSNPWLS 342 (715)
Q Consensus 278 ~~~~~~~~~g------~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~---~~------~~g~~~~~~~~~~~~~ 342 (715)
.+.+.+.... .+.....||.+.+.+ +.+ -+.+.+..+.+...... .. ..+.+...++.+.|.|
T Consensus 213 ~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~-~~I-aS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 213 CSDDGTVSIWRLYTDLSGMHSRALYDVPWDN-GVI-ASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP 290 (312)
T ss_pred ecCCcceEeeeeccCcchhcccceEeeeecc-cce-EeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC
Confidence 8877543210 001123466555552 111 11222333333332221 11 1123445677888998
Q ss_pred CCCEEEEEeeeCCeeEEEEE
Q 005093 343 DGCTMLLSSIWGSSQVIISV 362 (715)
Q Consensus 343 dg~~l~~~~~~~~~~~l~~~ 362 (715)
.+.-++++..++|..++|.+
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred CCCCceeecCCCceEEEEEe
Confidence 65667777777787777765
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-07 Score=89.88 Aligned_cols=241 Identities=13% Similarity=0.110 Sum_probs=140.1
Q ss_pred CccccccceEEeeCCC--CceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEe
Q 005093 38 FPVEMTGASAVVPSPS--GSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 115 (715)
Q Consensus 38 ~~~~~~~~~~~~~Spd--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~ 115 (715)
|..+.+.+....|+|. +..||-.+.+ +...+|.+........++.....+ ..++|.|+|++|+-.+
T Consensus 213 l~gH~~~v~~~~fhP~~~~~~lat~s~D--gtvklw~~~~e~~l~~l~gH~~RV----------s~VafHPsG~~L~Tas 280 (459)
T KOG0272|consen 213 LRGHTSRVGAAVFHPVDSDLNLATASAD--GTVKLWKLSQETPLQDLEGHLARV----------SRVAFHPSGKFLGTAS 280 (459)
T ss_pred EeccccceeeEEEccCCCccceeeeccC--CceeeeccCCCcchhhhhcchhhh----------eeeeecCCCceeeecc
Confidence 4455578899999998 4566655443 333333332222222333322233 7899999999988764
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCC-CCccceEEEecC
Q 005093 116 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPL 194 (715)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~~~~~spd 194 (715)
-+ ..-.+||+.++....+ ..+ +-.+...+|.||
T Consensus 281 fD--------------------------------------------~tWRlWD~~tk~ElL~--QEGHs~~v~~iaf~~D 314 (459)
T KOG0272|consen 281 FD--------------------------------------------STWRLWDLETKSELLL--QEGHSKGVFSIAFQPD 314 (459)
T ss_pred cc--------------------------------------------cchhhcccccchhhHh--hcccccccceeEecCC
Confidence 43 3346789988876544 232 336789999999
Q ss_pred CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCe
Q 005093 195 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 274 (715)
Q Consensus 195 g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~ 274 (715)
|. ++-++..+ ....||-+. .+..+..|..+...+..+.|||+|-.
T Consensus 315 GS-----L~~tGGlD------------~~~RvWDlR------------------tgr~im~L~gH~k~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 315 GS-----LAATGGLD------------SLGRVWDLR------------------TGRCIMFLAGHIKEILSVAFSPNGYH 359 (459)
T ss_pred Cc-----eeeccCcc------------chhheeecc------------------cCcEEEEecccccceeeEeECCCceE
Confidence 98 55554211 112344332 34445566777778999999999999
Q ss_pred EEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeC
Q 005093 275 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 354 (715)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~ 354 (715)
||-.+.+.+ .-++|+.......+ + | .+..-+..+.++|+...++++..-+
T Consensus 360 lATgs~Dnt-----------~kVWDLR~r~~ly~------------i------p-AH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 360 LATGSSDNT-----------CKVWDLRMRSELYT------------I------P-AHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred EeecCCCCc-----------EEEeeeccccccee------------c------c-cccchhhheEecccCCeEEEEcccC
Confidence 987766642 44556654332110 0 0 0122356778998666777887777
Q ss_pred CeeEEEEEECCCCcE-EEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEE
Q 005093 355 SSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVK 405 (715)
Q Consensus 355 ~~~~l~~~d~~tg~~-~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~ 405 (715)
...+||. ..+... +.+....+-+....+++++..++ ..+.++.-.+|
T Consensus 410 ~t~kiWs--~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~--t~s~DRT~KLW 457 (459)
T KOG0272|consen 410 NTVKIWS--TRTWSPLKSLAGHEGKVISLDISPDSQAIA--TSSFDRTIKLW 457 (459)
T ss_pred cceeeec--CCCcccchhhcCCccceEEEEeccCCceEE--EeccCceeeec
Confidence 7777774 334443 33444443232235566666554 34455544433
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-06 Score=84.17 Aligned_cols=254 Identities=15% Similarity=0.207 Sum_probs=159.0
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEE-ecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
..++..+|+-||..||+....+ ...+| ..|.....+ +.... +-.+.|+.+|++|+-...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G-----~~riw~~~G~l~~tl~~HkgP----------I~slKWnk~G~yilS~~v---- 296 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDG-----EARIWNKDGNLISTLGQHKGP----------IFSLKWNKKGTYILSGGV---- 296 (524)
T ss_pred CCcceEEecCCCCeEEEeecCc-----EEEEEecCchhhhhhhccCCc----------eEEEEEcCCCCEEEeccC----
Confidence 5689999999999999987764 55677 555544333 22222 269999999999987422
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCcc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
...+.+||.-+|+..+.. ...+...-++.|--+.+
T Consensus 297 ----------------------------------------D~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~~~~~---- 331 (524)
T KOG0273|consen 297 ----------------------------------------DGTTILWDAHTGTVKQQF-EFHSAPALDVDWQSNDE---- 331 (524)
T ss_pred ----------------------------------------CccEEEEeccCceEEEee-eeccCCccceEEecCce----
Confidence 256889999999887662 22233335678876554
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEec
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
++... ..+.|+++-++ .......+..+.+.+....|.|.|+-|+-.+.
T Consensus 332 -F~ts~---------------td~~i~V~kv~----------------~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd 379 (524)
T KOG0273|consen 332 -FATSS---------------TDGCIHVCKVG----------------EDRPVKTFIGHHGEVNALKWNPTGSLLASCSD 379 (524)
T ss_pred -EeecC---------------CCceEEEEEec----------------CCCcceeeecccCceEEEEECCCCceEEEecC
Confidence 44433 22245555542 56677788888888999999999998887776
Q ss_pred CCCCCCCC----------ccccceeEeeecCCCCC---------CCcccceeeeeeceecCCCCCcccc--ccCCCCCCc
Q 005093 281 KSSVDSGA----------HSATDSLHRIDWPTNGN---------FSSLEKIVDVIPVVQCAEGDCFPGL--YSSSILSNP 339 (715)
Q Consensus 281 ~~~~~~g~----------~~~~~~l~~~~~~~~~~---------~~lt~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~ 339 (715)
+.+..... +.-...||.+.+...+. ..++...+..+.+|+.......--+ +...+..++
T Consensus 380 D~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva 459 (524)
T KOG0273|consen 380 DGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA 459 (524)
T ss_pred CCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE
Confidence 65432110 01113467666644221 2233444455666655443321111 334567888
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEE
Q 005093 340 WLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 340 ~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
|+|||+++ .+.+.++...| ++.++++..+-..+.+.+....|+.+|+.|....
T Consensus 460 fS~~g~yl-AsGs~dg~V~i--ws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 460 FSPNGRYL-ASGSLDGCVHI--WSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred ecCCCcEE-EecCCCCeeEe--ccccchheeEeecCCCeEEEEEEcCCCCEEEEEe
Confidence 99999855 44444554444 5777888888777766555567888887665544
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.8e-07 Score=98.19 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=94.8
Q ss_pred cccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCC-ccEEEEecCcccc---cc----c--cCCCcccceeecCCC
Q 005093 40 VEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-QLEKEFHVPQTVH---GS----V--YADGWFEGISWNSDE 108 (715)
Q Consensus 40 ~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~---~~----~--~~~~~~~~~~wSpDg 108 (715)
.+.+.+....|||||++||+-++. ++..+| ... -...+....++.+ .+ + --+.-+..+.||||+
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD 141 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCc-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc
Confidence 345778999999999999987654 466667 221 0001110000000 00 0 001123789999999
Q ss_pred CeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccce
Q 005093 109 TLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQ 188 (715)
Q Consensus 109 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 188 (715)
.+|+-.+.+ +.|.+|+..+.+..... -.....+-.
T Consensus 142 ~~lvS~s~D--------------------------------------------nsViiwn~~tF~~~~vl-~~H~s~VKG 176 (942)
T KOG0973|consen 142 SLLVSVSLD--------------------------------------------NSVIIWNAKTFELLKVL-RGHQSLVKG 176 (942)
T ss_pred cEEEEeccc--------------------------------------------ceEEEEccccceeeeee-ecccccccc
Confidence 988876432 66889998887544431 222335668
Q ss_pred EEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCc------c
Q 005093 189 VVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS------S 262 (715)
Q Consensus 189 ~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~------~ 262 (715)
+.|-|-|+. ++..+. + +.-.||+.+ +-+-.+.++++.. .
T Consensus 177 vs~DP~Gky----~ASqsd--D-----------rtikvwrt~------------------dw~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 177 VSWDPIGKY----FASQSD--D-----------RTLKVWRTS------------------DWGIEKSITKPFEESPLTTF 221 (942)
T ss_pred eEECCccCe----eeeecC--C-----------ceEEEEEcc------------------cceeeEeeccchhhCCCcce
Confidence 899999998 776652 1 222455543 4455566665533 3
Q ss_pred ccceeEcCCCCeEEEEecC
Q 005093 263 AFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~~~ 281 (715)
...++|||||++|+-.-.-
T Consensus 222 f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeecccCCCcCeecchhhc
Confidence 6889999999999755443
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-06 Score=82.49 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=76.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEE-EEcCCC---------CCCCchhh--
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLL-IVNYRG---------SLGFGEEA-- 528 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi-~~d~rG---------~~~~g~~~-- 528 (715)
.|...+.++..|+++.++.+||+|.++-|.... ..........+++.-..++ .+.|+. ...|-...
T Consensus 19 ~~~~yri~i~~P~~~~~~~~YpVlY~lDGn~vf--~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~~r~~DyTp~~~~ 96 (264)
T COG2819 19 TGRKYRIFIATPKNYPKPGGYPVLYMLDGNAVF--NALTEIMLRILADLPPPVIVGIGYETILVFDPNRRAYDYTPPSAN 96 (264)
T ss_pred CCcEEEEEecCCCCCCCCCCCcEEEEecchhhh--chHHHHhhhhhhcCCCceEEEeccccccccccccccccCCCCCCC
Confidence 456788899999998777779977766663221 1111112233333332222 233332 11111100
Q ss_pred --hhcC----CCCCCccc--hhhHHHHHH-HHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 529 --LQSL----PGKVGSQD--VNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 529 --~~~~----~~~~~~~~--~~d~~~~i~-~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
.... ...-|..+ .+.+.+.+. ++.+...++.++.+|+|||+||.+++.++..+|+.|...+++||..
T Consensus 97 ~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl 172 (264)
T COG2819 97 AIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL 172 (264)
T ss_pred cccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh
Confidence 0000 01111111 222333333 3334456889999999999999999999999999999999999965
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-06 Score=78.87 Aligned_cols=183 Identities=13% Similarity=0.100 Sum_probs=113.8
Q ss_pred cceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEec--CCccEEEEecCcccc
Q 005093 13 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVH 90 (715)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (715)
.++..+.+.|+.++.. .. .|..+...+...++|||.++|.--+++ ....+|. ++..-.+.. ....
T Consensus 82 swD~~lrlWDl~~g~~-t~-----~f~GH~~dVlsva~s~dn~qivSGSrD-----kTiklwnt~g~ck~t~~~--~~~~ 148 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGES-TR-----RFVGHTKDVLSVAFSTDNRQIVSGSRD-----KTIKLWNTLGVCKYTIHE--DSHR 148 (315)
T ss_pred cccceEEEEEecCCcE-EE-----EEEecCCceEEEEecCCCceeecCCCc-----ceeeeeeecccEEEEEec--CCCc
Confidence 3667788888988732 22 344444779999999999999755443 3456672 322222222 2223
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
+ |++.++|||.....++++.. -...+.+||++
T Consensus 149 ~------WVscvrfsP~~~~p~Ivs~s------------------------------------------~DktvKvWnl~ 180 (315)
T KOG0279|consen 149 E------WVSCVRFSPNESNPIIVSAS------------------------------------------WDKTVKVWNLR 180 (315)
T ss_pred C------cEEEEEEcCCCCCcEEEEcc------------------------------------------CCceEEEEccC
Confidence 3 45999999997444444321 12569999998
Q ss_pred CCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC
Q 005093 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 250 (715)
Q Consensus 171 ~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (715)
+-+.+..- ......+..+.+||||.. +++-. ..++++++|| +.
T Consensus 181 ~~~l~~~~-~gh~~~v~t~~vSpDGsl----casGg---------------kdg~~~LwdL-----------------~~ 223 (315)
T KOG0279|consen 181 NCQLRTTF-IGHSGYVNTVTVSPDGSL----CASGG---------------KDGEAMLWDL-----------------NE 223 (315)
T ss_pred Ccchhhcc-ccccccEEEEEECCCCCE----EecCC---------------CCceEEEEEc-----------------cC
Confidence 87766541 223345778899999996 65532 3457888898 33
Q ss_pred CCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 251 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 251 ~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
++.-.-.+....+.+.+|||+-=+|+-.... .|.++|+.++..
T Consensus 224 ~k~lysl~a~~~v~sl~fspnrywL~~at~~------------sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 224 GKNLYSLEAFDIVNSLCFSPNRYWLCAATAT------------SIKIWDLESKAV 266 (315)
T ss_pred CceeEeccCCCeEeeEEecCCceeEeeccCC------------ceEEEeccchhh
Confidence 3332223345568899999976555433322 377788777543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6e-06 Score=77.18 Aligned_cols=227 Identities=14% Similarity=0.081 Sum_probs=134.9
Q ss_pred ccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-c---CCccEEEEec-CccccccccCCCcccceeecCCCCeEEE
Q 005093 39 PVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-S---QSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAY 113 (715)
Q Consensus 39 ~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wSpDg~~la~ 113 (715)
..+.+.+...+..+.+..+++.+.++ ....+|.+. + .|.+.+.+.. ..- ++....|+||.+.+-
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrD-k~ii~W~L~~dd~~~G~~~r~~~GHsH~----------v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRD-KTIIVWKLTSDDIKYGVPVRRLTGHSHF----------VSDVVLSSDGNFALS 80 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccc-eEEEEEEeccCccccCceeeeeeccceE----------ecceEEccCCceEEe
Confidence 33446788888888888888777765 333344443 2 2333433321 222 278899999975443
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEec
Q 005093 114 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 193 (715)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~sp 193 (715)
.+ ....+.+||+.+|+.++.- .-....+..+++||
T Consensus 81 ~s--------------------------------------------wD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~ 115 (315)
T KOG0279|consen 81 AS--------------------------------------------WDGTLRLWDLATGESTRRF-VGHTKDVLSVAFST 115 (315)
T ss_pred cc--------------------------------------------ccceEEEEEecCCcEEEEE-EecCCceEEEEecC
Confidence 21 1266999999998776541 22233577899999
Q ss_pred CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCC--CccccceeEcCC
Q 005093 194 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPD 271 (715)
Q Consensus 194 dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--~~~~~~~~~spd 271 (715)
|+++ |+--+ ++..|-+++. .++-.-.+... ...+..++|||.
T Consensus 116 dn~q----ivSGS---------------rDkTiklwnt-----------------~g~ck~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 116 DNRQ----IVSGS---------------RDKTIKLWNT-----------------LGVCKYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred CCce----eecCC---------------Ccceeeeeee-----------------cccEEEEEecCCCcCcEEEEEEcCC
Confidence 9999 77654 3335666664 33333334433 456888999999
Q ss_pred CCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEe
Q 005093 272 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 351 (715)
Q Consensus 272 g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~ 351 (715)
....++++... ...+.++|+.+-+.+.. |+| +......+..||||. +..+.
T Consensus 160 ~~~p~Ivs~s~---------DktvKvWnl~~~~l~~~------------------~~g-h~~~v~t~~vSpDGs-lcasG 210 (315)
T KOG0279|consen 160 ESNPIIVSASW---------DKTVKVWNLRNCQLRTT------------------FIG-HSGYVNTVTVSPDGS-LCASG 210 (315)
T ss_pred CCCcEEEEccC---------CceEEEEccCCcchhhc------------------ccc-ccccEEEEEECCCCC-EEecC
Confidence 64444444332 23478889887554221 111 112345677999998 55554
Q ss_pred eeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecC
Q 005093 352 IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDG 388 (715)
Q Consensus 352 ~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~ 388 (715)
..++ .++.+|++.++...-......+....|+|..
T Consensus 211 gkdg--~~~LwdL~~~k~lysl~a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 211 GKDG--EAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR 245 (315)
T ss_pred CCCc--eEEEEEccCCceeEeccCCCeEeeEEecCCc
Confidence 4444 5666777777765444444434444566543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-06 Score=84.99 Aligned_cols=282 Identities=13% Similarity=0.086 Sum_probs=150.2
Q ss_pred ccccccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCc-cEEEEe
Q 005093 6 QPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ-LEKEFH 84 (715)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~ 84 (715)
...+....++.++..+|+.+-...-.-+..- .+.+...+...+|||.|..|+.++.. .|.-+++..|. ..+...
T Consensus 179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l-~P~E~h~i~sl~ys~Tg~~iLvvsg~----aqakl~DRdG~~~~e~~K 253 (641)
T KOG0772|consen 179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQL-QPCETHQINSLQYSVTGDQILVVSGS----AQAKLLDRDGFEIVEFSK 253 (641)
T ss_pred CceeeeccccceEEEEecccccccchhhhcc-CcccccccceeeecCCCCeEEEEecC----cceeEEccCCceeeeeec
Confidence 3455666777788888887655322111111 23445668899999999999888543 35555664443 222221
Q ss_pred cCccccccccCCC---cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccC
Q 005093 85 VPQTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQ 161 (715)
Q Consensus 85 ~~~~~~~~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 161 (715)
...-+.+...+-| .+..-.|.|+.+..+..+..+
T Consensus 254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D------------------------------------------- 290 (641)
T KOG0772|consen 254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD------------------------------------------- 290 (641)
T ss_pred cchhhhhhhccCCceeeeeccccccCcccceEEecCC-------------------------------------------
Confidence 1111111111111 235667999988876654432
Q ss_pred ceEEEEEccCCc--eEeec---CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccc
Q 005093 162 PSLFVININSGE--VQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 236 (715)
Q Consensus 162 ~~l~~~~~~~g~--~~~l~---~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 236 (715)
..|.+|+++.-+ .+.+. .....+.+....|+|||+. |+-.. .++ .|-.++..
T Consensus 291 gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~----iAagc-------------~DG--SIQ~W~~~---- 347 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL----IAAGC-------------LDG--SIQIWDKG---- 347 (641)
T ss_pred CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch----hhhcc-------------cCC--ceeeeecC----
Confidence 457777775432 22222 1223446778899999998 76543 112 23333320
Q ss_pred hhhhhhhhccCCCCCC----ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccce
Q 005093 237 EASELELKESSSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 312 (715)
Q Consensus 237 ~~~~~~~~~~~~~~~~----~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~ 312 (715)
..+.. ++........+..++||+||++|+-.+.++ .|-++||..-+. .|-..
T Consensus 348 -----------~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~-----------tLKvWDLrq~kk-pL~~~- 403 (641)
T KOG0772|consen 348 -----------SRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD-----------TLKVWDLRQFKK-PLNVR- 403 (641)
T ss_pred -----------CcccccceEeeeccCCCCceeEEEeccccchhhhccCCC-----------ceeeeecccccc-chhhh-
Confidence 01111 111122233588899999999997655553 377888765322 11100
Q ss_pred eeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee--C--CeeEEEEEECCCCc-EEEecCCCCCceeEEEeec
Q 005093 313 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--G--SSQVIISVNVSSGE-LLRITPAESNFSWSLLTLD 387 (715)
Q Consensus 313 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~--~--~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~~ 387 (715)
..+ ...| ...+.+||||.+ |+++... . ....|+.+|..|-. +.+|.-....+....|.+.
T Consensus 404 ---tgL-----~t~~------~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 404 ---TGL-----PTPF------PGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred ---cCC-----CccC------CCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence 000 0112 235789999987 4454431 1 23469999876643 3444444333333456666
Q ss_pred CCEEEEEEeC
Q 005093 388 GDNIIAVSSS 397 (715)
Q Consensus 388 ~~~l~~~~~~ 397 (715)
=++|++...+
T Consensus 469 LNQi~~gsgd 478 (641)
T KOG0772|consen 469 LNQIFAGSGD 478 (641)
T ss_pred hhheeeecCC
Confidence 6666654433
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-06 Score=93.60 Aligned_cols=280 Identities=14% Similarity=0.128 Sum_probs=154.1
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
..+....+||||+.++...... +..+| .+++. .+.....+... .+..+.|||||+.|+-.+.+...
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~-~~~~~l~~h~~------~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDG-----LIRIWKLEGIKS-NLLRELSGHTR------GVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCC-----cEEEeecccccc-hhhcccccccc------ceeeeEECCCCcEEEEecCCceE
Confidence 4467789999999988875542 44455 22221 11111112211 23799999999988777666544
Q ss_pred CCCCccC-CCCCCCCCCcCCCCCCCCCcccCCcCccc-CCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCC
Q 005093 121 SKPTFSL-GSTKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 121 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
+ .|.. ..............+.....|.++. ..+ .......+.+||+.+++....- ......+...+|++||..
T Consensus 228 r--iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~- 302 (456)
T KOG0266|consen 228 R--IWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNL- 302 (456)
T ss_pred E--EeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCE-
Confidence 3 2332 1112223333455556667777774 333 3334588999999998765541 233346778899999997
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc---eecCCCCc--cccceeEcCCCC
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESIS--SAFFPRFSPDGK 273 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~--~~~~~~~spdg~ 273 (715)
|+-.. .++.|.++|+ .++.. ..+..... ......|||+|+
T Consensus 303 ---l~s~s---------------~d~~i~vwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 303 ---LVSAS---------------YDGTIRVWDL-----------------ETGSKLCLKLLSGAENSAPVTSVQFSPNGK 347 (456)
T ss_pred ---EEEcC---------------CCccEEEEEC-----------------CCCceeeeecccCCCCCCceeEEEECCCCc
Confidence 66553 2236778886 55662 23433333 468899999999
Q ss_pred eEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEee
Q 005093 274 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 352 (715)
Q Consensus 274 ~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~ 352 (715)
+|+-...+. .|-.+|+..+.... ........ .....+..+++++.+ ++..
T Consensus 348 ~ll~~~~d~-----------~~~~w~l~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~i-~sg~ 398 (456)
T KOG0266|consen 348 YLLSASLDR-----------TLKLWDLRSGKSVGTYTGHSNLV-----------------RCIFSPTLSTGGKLI-YSGS 398 (456)
T ss_pred EEEEecCCC-----------eEEEEEccCCcceeeecccCCcc-----------------eeEecccccCCCCeE-EEEe
Confidence 887555442 46677777654311 11111000 012233346677744 4444
Q ss_pred eCCeeEEEEEECCCCcEEEecCCC--CCceeEEEeecCCEEEEEEeCCCCCCeEE
Q 005093 353 WGSSQVIISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSSPVDVPQVK 405 (715)
Q Consensus 353 ~~~~~~l~~~d~~tg~~~~l~~~~--~~~~~~~~s~~~~~l~~~~~~~~~p~~l~ 405 (715)
.+ ..++.+|+.++......... ..+....+.+..+.++......+....++
T Consensus 399 ~d--~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 399 ED--GSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred CC--ceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 33 36777788766555443333 22222344444444444333344444443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-05 Score=75.40 Aligned_cols=252 Identities=13% Similarity=0.051 Sum_probs=128.2
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecC-ccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
+.+....+|+||..|+-.++. +.-++|.. ..|...+.+... .++ .-..|.-....+.+.++.....
T Consensus 15 ~~i~sl~fs~~G~~litss~d--Dsl~LYd~-~~g~~~~ti~skkyG~----------~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSED--DSLRLYDS-LSGKQVKTINSKKYGV----------DLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred CceeEEEecCCCCEEEEecCC--CeEEEEEc-CCCceeeEeecccccc----------cEEEEecCCceEEEccCCCCCc
Confidence 568899999999999864443 33333333 344444444332 243 4555555555566655422222
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccC-ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCcc
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQ-PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
..+..+...+-..-.......+..+.-.|. ++.+..... .+|.+||+...+-+-+. .. ....-++|.|+|
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~~cqg~l--~~-~~~pi~AfDp~G----- 152 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVKKCQGLL--NL-SGRPIAAFDPEG----- 152 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCC-CCeEEecccCCeEEeeEecCCCCceEE--ec-CCCcceeECCCC-----
Confidence 222222221111111111111222222222 233333333 68999999866654441 11 122245788887
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC---CCccccceeEcCCCCeEEE
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE---SISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~---~~~~~~~~~~spdg~~l~~ 277 (715)
|+|+..... ..|-++|+-. .+.|..+...- .........||||||.|+.
T Consensus 153 -LifA~~~~~-------------~~IkLyD~Rs--------------~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 153 -LIFALANGS-------------ELIKLYDLRS--------------FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred -cEEEEecCC-------------CeEEEEEecc--------------cCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence 566553221 1466666510 12344443332 2334678999999999987
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCe
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 356 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~ 356 (715)
..+.. .++++|--.|..+. ++... .... ......|+||++.| +....++
T Consensus 205 sT~~s-----------~~~~lDAf~G~~~~tfs~~~----------~~~~-------~~~~a~ftPds~Fv-l~gs~dg- 254 (311)
T KOG1446|consen 205 STNAS-----------FIYLLDAFDGTVKSTFSGYP----------NAGN-------LPLSATFTPDSKFV-LSGSDDG- 254 (311)
T ss_pred EeCCC-----------cEEEEEccCCcEeeeEeecc----------CCCC-------cceeEEECCCCcEE-EEecCCC-
Confidence 77653 37888865544211 11000 0000 11356799999855 4555445
Q ss_pred eEEEEEECCCCcEEEecCC
Q 005093 357 QVIISVNVSSGELLRITPA 375 (715)
Q Consensus 357 ~~l~~~d~~tg~~~~l~~~ 375 (715)
+|..|++++|...-...+
T Consensus 255 -~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 255 -TIHVWNLETGKKVAVLRG 272 (311)
T ss_pred -cEEEEEcCCCcEeeEecC
Confidence 555566678877665554
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.9e-06 Score=88.96 Aligned_cols=180 Identities=12% Similarity=0.055 Sum_probs=99.0
Q ss_pred ceEEEEEccCCce--------EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEeccc
Q 005093 162 PSLFVININSGEV--------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 233 (715)
Q Consensus 162 ~~l~~~~~~~g~~--------~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 233 (715)
..|.+||+.++.. ..+ ......+..+.|+|++.. ++.++.. +..|.++|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L--~gH~~~V~~l~f~P~~~~----iLaSgs~--------------DgtVrIWDl-- 155 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHL--QGHTKKVGIVSFHPSAMN----VLASAGA--------------DMVVNVWDV-- 155 (493)
T ss_pred CEEEEEecCCCccccccCcceEEe--cCCCCcEEEEEeCcCCCC----EEEEEeC--------------CCEEEEEEC--
Confidence 5688888865421 223 122345678999999876 6666532 235777786
Q ss_pred ccchhhhhhhhccCCCCCC-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccc
Q 005093 234 YKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEK 311 (715)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~ 311 (715)
.+++ ...+......+....|+|||+.|+..+.+. .|.++|+.+++... +..
T Consensus 156 ---------------~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg-----------~IrIwD~rsg~~v~tl~~- 208 (493)
T PTZ00421 156 ---------------ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK-----------KLNIIDPRDGTIVSSVEA- 208 (493)
T ss_pred ---------------CCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCC-----------EEEEEECCCCcEEEEEec-
Confidence 4443 344555566788999999999887665442 48888887654310 000
Q ss_pred eeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCc-EEE-ecCCC-CCceeEEEeec
Q 005093 312 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGE-LLR-ITPAE-SNFSWSLLTLD 387 (715)
Q Consensus 312 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~-~~~~~l~~~d~~tg~-~~~-l~~~~-~~~~~~~~s~~ 387 (715)
... .......|.+++..++..... .....+..+|+.+.. ... +.... .......++++
T Consensus 209 -----------H~~-------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d 270 (493)
T PTZ00421 209 -----------HAS-------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDED 270 (493)
T ss_pred -----------CCC-------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCC
Confidence 000 011245688887766544322 223456677876533 221 11111 12233456777
Q ss_pred CCEEEEEEeCCCCCCeEEEEeecc
Q 005093 388 GDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 388 ~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
++.++....+- ..|.+.++.+
T Consensus 271 ~~~L~lggkgD---g~Iriwdl~~ 291 (493)
T PTZ00421 271 TNLLYIGSKGE---GNIRCFELMN 291 (493)
T ss_pred CCEEEEEEeCC---CeEEEEEeeC
Confidence 77665543222 2366666543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.2e-06 Score=92.42 Aligned_cols=252 Identities=12% Similarity=0.072 Sum_probs=139.4
Q ss_pred CCCceEEEEecCCCCCCeEEEEe-c-C---CccEEEEecCcc-ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCc
Q 005093 52 PSGSKLLVVRNPENESPIQFELW-S-Q---SQLEKEFHVPQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 125 (715)
Q Consensus 52 pdg~~la~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 125 (715)
..|.++.|.....+....+|... . + +..+-+++...- ..+. .-.+..+.|||||++|+|..+..
T Consensus 79 ~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~---~~~l~~~~~Spdg~~la~~~d~~------- 148 (686)
T PRK10115 79 IKNGYRYRHIYEPGCEYAIYQRQSAFSEEWDEWETLLDANKRAAHSE---FYTLGGMAITPDNTIMALAEDFL------- 148 (686)
T ss_pred EECCEEEEEEEcCCCccEEEEEecCCCCCCCCCEEEEcchhhccCCC---cEEEeEEEECCCCCEEEEEecCC-------
Confidence 46788888776554444444433 1 1 222344443211 1101 01346889999999999986543
Q ss_pred cCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc--eEeecCCCCCCccceEEEecCCCCCccEEE
Q 005093 126 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 203 (715)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~--~~~l~~~~~~~~~~~~~~spdg~~~~~~i~ 203 (715)
|. ...+|++.|+++|+ ...+. ... ..+.|++||+. |+
T Consensus 149 ---------------------------G~-----E~~~l~v~d~~tg~~l~~~i~----~~~-~~~~w~~D~~~----~~ 187 (686)
T PRK10115 149 ---------------------------SR-----RQYGIRFRNLETGNWYPELLD----NVE-PSFVWANDSWT----FY 187 (686)
T ss_pred ---------------------------Cc-----EEEEEEEEECCCCCCCCcccc----Ccc-eEEEEeeCCCE----EE
Confidence 22 35889999999997 33331 112 45899999999 99
Q ss_pred EEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC--CceecCCC-Ccccc-ceeEcCCCCeEEEEe
Q 005093 204 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTES-ISSAF-FPRFSPDGKFLVFLS 279 (715)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lt~~-~~~~~-~~~~spdg~~l~~~~ 279 (715)
|+..... ..++.+||++++ .++ +-+.+..+ ..... ....+.|+++++..+
T Consensus 188 y~~~~~~---------~~~~~~v~~h~l-----------------gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~ 241 (686)
T PRK10115 188 YVRKHPV---------TLLPYQVWRHTI-----------------GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHL 241 (686)
T ss_pred EEEecCC---------CCCCCEEEEEEC-----------------CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEE
Confidence 9885321 014468999998 555 33444443 22222 223355999987555
Q ss_pred cCCCCCCCCccccceeEeeec--CCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee-CCe
Q 005093 280 AKSSVDSGAHSATDSLHRIDW--PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSS 356 (715)
Q Consensus 280 ~~~~~~~g~~~~~~~l~~~~~--~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~-~~~ 356 (715)
... ....+++++. .++..+.+... ..+.. +.....+..+++.++. ...
T Consensus 242 ~~~--------~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~-----------~~~~~~~~~ly~~tn~~~~~ 292 (686)
T PRK10115 242 ASA--------TTSEVLLLDAELADAEPFVFLPR----------RKDHE-----------YSLDHYQHRFYLRSNRHGKN 292 (686)
T ss_pred ECC--------ccccEEEEECcCCCCCceEEEEC----------CCCCE-----------EEEEeCCCEEEEEEcCCCCC
Confidence 543 1235666663 33222111110 00110 0111123567777764 456
Q ss_pred eEEEEEECC-CCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 357 QVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 357 ~~l~~~d~~-tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
..|+.+++. +++.+.+...........+...++.|+++......+. ++.++..
T Consensus 293 ~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~-l~~~~~~ 346 (686)
T PRK10115 293 FGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTS-LRQINRK 346 (686)
T ss_pred ceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEE-EEEEcCC
Confidence 679999987 5666677666332333455555777777665444433 6666654
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=90.19 Aligned_cols=172 Identities=19% Similarity=0.170 Sum_probs=81.7
Q ss_pred CCcEEEEEcCCCCCCCCccchH----HHHHHHhCCcEEEEEcCCCCC--CCchh---------h-hhcCCCCCCc-----
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSK----SLAFLSSVGYSLLIVNYRGSL--GFGEE---------A-LQSLPGKVGS----- 538 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~----~~~~la~~G~~vi~~d~rG~~--~~g~~---------~-~~~~~~~~~~----- 538 (715)
+.+-||++||.+.+ ..-+.. +...|.+.++..+.+|-+-.. +.+-. . .......|..
T Consensus 3 ~k~riLcLHG~~~n--a~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQN--AEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT----HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCcC--HHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 46779999996554 334443 333444448999988844211 01000 0 0011111211
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC--------CCceeEEEecCCcchhhhhccCCCCCCce
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNLALMVGTTDIPDWC 610 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 610 (715)
....++.+++++|.+.-.-...=.+|+|+|.||.+|+.++... ...++.+|+++++......
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GPfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~---------- 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGPFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD---------- 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH---SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-----------
T ss_pred ccccCHHHHHHHHHHHHHhcCCeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh----------
Confidence 1244455555555442100111358999999999999887532 2357889988886421100
Q ss_pred eeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCC
Q 005093 611 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 690 (715)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 690 (715)
........++++|+|.++|++|.+++.+.+..+++..... .+++..++ |
T Consensus 151 ---------------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~g-G 199 (212)
T PF03959_consen 151 ---------------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHDG-G 199 (212)
T ss_dssp ---------------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEESS-S
T ss_pred ---------------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEECC-C
Confidence 0000123457899999999999999998999999988764 66777765 7
Q ss_pred ccCC
Q 005093 691 HGIE 694 (715)
Q Consensus 691 H~~~ 694 (715)
|.+.
T Consensus 200 H~vP 203 (212)
T PF03959_consen 200 HHVP 203 (212)
T ss_dssp SS--
T ss_pred CcCc
Confidence 8664
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.2e-07 Score=92.95 Aligned_cols=70 Identities=9% Similarity=-0.012 Sum_probs=54.9
Q ss_pred ccCCC-CcEEEEeeCCCCcCCchHHHHHHHHHHHcC-CcEEEEEeCCCCcc--CCCCCchHHHHHHHHHHHHHh
Q 005093 644 ISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKG-VETKVIVFPNDVHG--IERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 644 ~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+.+|+ +|+|.+.|+.|.++|+.++..+.+.....+ ...+.+..+++||. |.....+.+.+..|.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 45788 999999999999999999998887653322 23456777789995 455677778899999999864
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-06 Score=81.09 Aligned_cols=210 Identities=12% Similarity=0.029 Sum_probs=116.7
Q ss_pred ccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccc
Q 005093 12 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVH 90 (715)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 90 (715)
-.....|.++|+-.+.. +.-+... +..-...|||||.++++..+.+ .+-.++ ..-+.....+...-+
T Consensus 83 as~dk~ir~wd~r~~k~--~~~i~~~-----~eni~i~wsp~g~~~~~~~kdD----~it~id~r~~~~~~~~~~~~e~- 150 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKC--TARIETK-----GENINITWSPDGEYIAVGNKDD----RITFIDARTYKIVNEEQFKFEV- 150 (313)
T ss_pred ecCCceEEEEEeccCcE--EEEeecc-----CcceEEEEcCCCCEEEEecCcc----cEEEEEecccceeehhccccee-
Confidence 33455666666655543 2222223 5677889999999999886554 333344 222222111212222
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
..+.|+-++ .++|+.+.- +.-+|.-++ .
T Consensus 151 ---------ne~~w~~~n-d~Fflt~Gl-----------------------------------------G~v~ILsyp-s 178 (313)
T KOG1407|consen 151 ---------NEISWNNSN-DLFFLTNGL-----------------------------------------GCVEILSYP-S 178 (313)
T ss_pred ---------eeeeecCCC-CEEEEecCC-----------------------------------------ceEEEEecc-c
Confidence 578898544 577764421 123344443 1
Q ss_pred CCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC
Q 005093 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 250 (715)
Q Consensus 171 ~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (715)
-..++.| ........-..|+|+|+. ++.-+. +..+-+.|++ +-
T Consensus 179 Lkpv~si--~AH~snCicI~f~p~Gry----fA~GsA---------------DAlvSLWD~~----------------EL 221 (313)
T KOG1407|consen 179 LKPVQSI--KAHPSNCICIEFDPDGRY----FATGSA---------------DALVSLWDVD----------------EL 221 (313)
T ss_pred ccccccc--ccCCcceEEEEECCCCce----Eeeccc---------------cceeeccChh----------------Hh
Confidence 2233334 222333446789999998 765431 1123333431 33
Q ss_pred CCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccc
Q 005093 251 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 330 (715)
Q Consensus 251 ~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~ 330 (715)
-=.+.++..+..++.++||.||++||-.+.+. -|-..+..+|... ++ .+-
T Consensus 222 iC~R~isRldwpVRTlSFS~dg~~lASaSEDh-----------~IDIA~vetGd~~------~e------I~~------- 271 (313)
T KOG1407|consen 222 ICERCISRLDWPVRTLSFSHDGRMLASASEDH-----------FIDIAEVETGDRV------WE------IPC------- 271 (313)
T ss_pred hhheeeccccCceEEEEeccCcceeeccCccc-----------eEEeEecccCCeE------EE------eec-------
Confidence 44567788888999999999999999777663 1344455554431 00 000
Q ss_pred ccCCCCCCccccCCCEEEEEeee
Q 005093 331 YSSSILSNPWLSDGCTMLLSSIW 353 (715)
Q Consensus 331 ~~~~~~~~~~~~dg~~l~~~~~~ 353 (715)
......++|.|....|.|..++
T Consensus 272 -~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 272 -EGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred -cCCceeEEecCCCceeeEEecC
Confidence 0134578899987766666553
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-06 Score=85.81 Aligned_cols=256 Identities=14% Similarity=0.138 Sum_probs=132.4
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 93 (715)
...++++++..... ...+. .+...+....|+|+++.|+.....+ .+.... .+++.........
T Consensus 30 ~g~i~i~~~~~~~~-~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~----~i~i~~~~~~~~~~~~~~~~------ 93 (289)
T cd00200 30 DGTIKVWDLETGEL-LRTLK-----GHTGPVRDVAASADGTYLASGSSDK----TIRLWDLETGECVRTLTGHT------ 93 (289)
T ss_pred CcEEEEEEeeCCCc-EEEEe-----cCCcceeEEEECCCCCEEEEEcCCC----eEEEEEcCcccceEEEeccC------
Confidence 44566666665431 12221 1224456889999998888775532 333222 3322222222111
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCcc-CceEEEEEccCC
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR-QPSLFVININSG 172 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g 172 (715)
..+..+.|+|+++.|+....... ...+....................+.+.++ +..+.... ...|++||+.++
T Consensus 94 ---~~i~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~ 167 (289)
T cd00200 94 ---SYVSSVAFSPDGRILSSSSRDKT--IKVWDVETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTG 167 (289)
T ss_pred ---CcEEEEEEcCCCCEEEEecCCCe--EEEEECCCcEEEEEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEcccc
Confidence 11278999999765554432221 111221111111111111222334445554 33333333 578999999876
Q ss_pred ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 173 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
+..... ......+..+.|+|+++. +++.+. ...|..+|+ ..+.
T Consensus 168 ~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~~---------------~~~i~i~d~-----------------~~~~ 210 (289)
T cd00200 168 KCVATL-TGHTGEVNSVAFSPDGEK----LLSSSS---------------DGTIKLWDL-----------------STGK 210 (289)
T ss_pred ccceeE-ecCccccceEEECCCcCE----EEEecC---------------CCcEEEEEC-----------------CCCc
Confidence 654331 222335778999999987 777652 236778886 4333
Q ss_pred c-eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccc
Q 005093 253 V-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 331 (715)
Q Consensus 253 ~-~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~ 331 (715)
. ..+......+..+.|+|+++.++..+.+ ..|+++++.+++....... .
T Consensus 211 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~i~i~~~~~~~~~~~~~~-------------------~ 260 (289)
T cd00200 211 CLGTLRGHENGVNSVAFSPDGYLLASGSED-----------GTIRVWDLRTGECVQTLSG-------------------H 260 (289)
T ss_pred eecchhhcCCceEEEEEcCCCcEEEEEcCC-----------CcEEEEEcCCceeEEEccc-------------------c
Confidence 3 3333445577889999997655443322 2488888775433111100 0
Q ss_pred cCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 332 SSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 332 ~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
...+..+.|+++++.+ ++...++...+|
T Consensus 261 ~~~i~~~~~~~~~~~l-~~~~~d~~i~iw 288 (289)
T cd00200 261 TNSVTSLAWSPDGKRL-ASGSADGTIRIW 288 (289)
T ss_pred CCcEEEEEECCCCCEE-EEecCCCeEEec
Confidence 1134567799998755 444444444444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-05 Score=83.11 Aligned_cols=262 Identities=15% Similarity=0.105 Sum_probs=129.1
Q ss_pred EEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCc
Q 005093 47 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 125 (715)
Q Consensus 47 ~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 125 (715)
...+||||++++. .+++ + .+-.++ ..++..+.+...... .++++||||++|+.....
T Consensus 41 ~~~~s~Dgr~~yv-~~rd-g--~vsviD~~~~~~v~~i~~G~~~----------~~i~~s~DG~~~~v~n~~-------- 98 (369)
T PF02239_consen 41 GLKFSPDGRYLYV-ANRD-G--TVSVIDLATGKVVATIKVGGNP----------RGIAVSPDGKYVYVANYE-------- 98 (369)
T ss_dssp EEE-TT-SSEEEE-EETT-S--EEEEEETTSSSEEEEEE-SSEE----------EEEEE--TTTEEEEEEEE--------
T ss_pred EEEecCCCCEEEE-EcCC-C--eEEEEECCcccEEEEEecCCCc----------ceEEEcCCCCEEEEEecC--------
Confidence 3578999998655 4443 2 566677 556655555554444 689999999998765432
Q ss_pred cCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCC------CCCccceEEEecCCCCCc
Q 005093 126 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP------KSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~------~~~~~~~~~~spdg~~~~ 199 (715)
.+++.++|.++.++.....+. .........-||+.+.
T Consensus 99 -----------------------------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~-- 141 (369)
T PF02239_consen 99 -----------------------------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE-- 141 (369)
T ss_dssp -----------------------------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE--
T ss_pred -----------------------------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE--
Confidence 267999999887765431011 1112334556777776
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-ecCCCCccccceeEcCCCCeEEEE
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~spdg~~l~~~ 278 (715)
++++.. ...+||.+|.. ...... ..........+..|+|||++++-.
T Consensus 142 --fVv~lk--------------d~~~I~vVdy~----------------d~~~~~~~~i~~g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 142 --FVVNLK--------------DTGEIWVVDYS----------------DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp --EEEEET--------------TTTEEEEEETT----------------TSSCEEEEEEE--TTEEEEEE-TTSSEEEEE
T ss_pred --EEEEEc--------------cCCeEEEEEec----------------cccccceeeecccccccccccCcccceeeec
Confidence 666542 22489999961 222111 111222345678999999988665
Q ss_pred ecCCCCCCCCccccceeEeeecCCCCCCCccc---ceee----------eeeceecCCCCCc-------------c-ccc
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE---KIVD----------VIPVVQCAEGDCF-------------P-GLY 331 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~---~~~~----------~~~~~~~~~~~~~-------------~-g~~ 331 (715)
.+.. ..|-++|..+++...+.. .... .-+.|.......+ + ..|
T Consensus 190 ~~~s----------n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 190 ANGS----------NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp EGGG----------TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred cccc----------ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 4432 234455544432211100 0000 0001111110000 0 001
Q ss_pred c--------CCCCCCccccCCCEEEEEee-eCCeeEEEEEECCCCcEE-EecCCCC-CceeEEEeecCCEEEEEEeCCCC
Q 005093 332 S--------SSILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELL-RITPAES-NFSWSLLTLDGDNIIAVSSSPVD 400 (715)
Q Consensus 332 ~--------~~~~~~~~~~dg~~l~~~~~-~~~~~~l~~~d~~tg~~~-~l~~~~~-~~~~~~~s~~~~~l~~~~~~~~~ 400 (715)
. .+...+.-+||++++++... ......|..+|.++-+.. .+....+ -.....|+++|.+++++.-....
T Consensus 260 kvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 260 KVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp SEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT
T ss_pred eEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC
Confidence 0 11123345899998888622 334668999999887654 4443222 13346899999999987755444
Q ss_pred CCeEEEEeecc
Q 005093 401 VPQVKYGYFVD 411 (715)
Q Consensus 401 p~~l~~~~~~~ 411 (715)
+|.++|..+
T Consensus 340 --~i~v~D~~T 348 (369)
T PF02239_consen 340 --AIVVYDAKT 348 (369)
T ss_dssp --EEEEEETTT
T ss_pred --EEEEEECCC
Confidence 788888543
|
... |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.9e-07 Score=86.67 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=95.0
Q ss_pred EEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCc
Q 005093 47 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 125 (715)
Q Consensus 47 ~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 125 (715)
.-.+||+|++||..++. ++...+ .+=+..++..+-..+ ..+-|+.|.-+|+.++..
T Consensus 13 ~c~fSp~g~yiAs~~~y-----rlviRd~~tlq~~qlf~cldki----------~yieW~ads~~ilC~~yk-------- 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-----RLVIRDSETLQLHQLFLCLDKI----------VYIEWKADSCHILCVAYK-------- 69 (447)
T ss_pred ceeECCCCCeeeeeeee-----EEEEeccchhhHHHHHHHHHHh----------hheeeeccceeeeeeeec--------
Confidence 45899999999987543 232222 121222222221222 689999999999887543
Q ss_pred cCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEE
Q 005093 126 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 205 (715)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~ 205 (715)
++.+.+|++.-.+-..-. ..+..+....+|||||+. |+..
T Consensus 70 -----------------------------------~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdgrh----iL~t 109 (447)
T KOG4497|consen 70 -----------------------------------DPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRH----ILLT 109 (447)
T ss_pred -----------------------------------cceEEEEEeecceeEEEe-ccCCCcceeeeECCCcce----Eeee
Confidence 267999999776655331 455567778999999999 8877
Q ss_pred eecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 206 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
+. .+.+|-+..| .+....-+.-+.......+|.|||++.+..+.++
T Consensus 110 se--------------F~lriTVWSL-----------------~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 110 SE--------------FDLRITVWSL-----------------NTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ec--------------ceeEEEEEEe-----------------ccceeEEecccccCceeEEECCCCceeeeeeccc
Confidence 62 2235666665 5555555655556668899999999999888774
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-05 Score=86.36 Aligned_cols=217 Identities=12% Similarity=0.047 Sum_probs=119.5
Q ss_pred ccccceEEeeCC-CCceEEEEecCCCCCCeEEEEecCCcc----EEEEecCccccccccCCCcccceeecCCCCeEEEEe
Q 005093 41 EMTGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQSQL----EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 115 (715)
Q Consensus 41 ~~~~~~~~~~Sp-dg~~la~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~ 115 (715)
+.+.+...+||| |++.||..+.+ +.-.+|.+..++.. ..+..+. +... .+..+.|+|++..++..+
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~D--gtIkIWdi~~~~~~~~~~~~l~~L~-gH~~------~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASED--GTIMGWGIPEEGLTQNISDPIVHLQ-GHTK------KVGIVSFHPSAMNVLASA 144 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCC--CEEEEEecCCCccccccCcceEEec-CCCC------cEEEEEeCcCCCCEEEEE
Confidence 446789999999 88888766543 33334444332211 1122221 1112 237899999976555543
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCC
Q 005093 116 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLN 195 (715)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg 195 (715)
.. ...|.+||+++++..... ......+..++|+|||
T Consensus 145 s~-------------------------------------------DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG 180 (493)
T PTZ00421 145 GA-------------------------------------------DMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDG 180 (493)
T ss_pred eC-------------------------------------------CCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCC
Confidence 21 266999999988754331 2233457789999999
Q ss_pred CCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCcc-ccceeEcCCCC
Q 005093 196 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISS-AFFPRFSPDGK 273 (715)
Q Consensus 196 ~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~-~~~~~~spdg~ 273 (715)
+. |+..+ .+..|.++|+ .++. ...+..+.+. .....|++++.
T Consensus 181 ~l----Latgs---------------~Dg~IrIwD~-----------------rsg~~v~tl~~H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 181 SL----LCTTS---------------KDKKLNIIDP-----------------RDGTIVSSVEAHASAKSQRCLWAKRKD 224 (493)
T ss_pred CE----EEEec---------------CCCEEEEEEC-----------------CCCcEEEEEecCCCCcceEEEEcCCCC
Confidence 86 66554 2236778886 4333 3334333332 34578999988
Q ss_pred eEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee
Q 005093 274 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 353 (715)
Q Consensus 274 ~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~ 353 (715)
.|+-+.... .....|.++|+..... .+.... . +. . .....+.|++|++.++..+..
T Consensus 225 ~ivt~G~s~-------s~Dr~VklWDlr~~~~-p~~~~~--------~--d~-~-----~~~~~~~~d~d~~~L~lggkg 280 (493)
T PTZ00421 225 LIITLGCSK-------SQQRQIMLWDTRKMAS-PYSTVD--------L--DQ-S-----SALFIPFFDEDTNLLYIGSKG 280 (493)
T ss_pred eEEEEecCC-------CCCCeEEEEeCCCCCC-ceeEec--------c--CC-C-----CceEEEEEcCCCCEEEEEEeC
Confidence 776554332 1234688888765332 111000 0 00 0 012234578899866655433
Q ss_pred CCeeEEEEEECCCCcEEEe
Q 005093 354 GSSQVIISVNVSSGELLRI 372 (715)
Q Consensus 354 ~~~~~l~~~d~~tg~~~~l 372 (715)
++ .|..+|+.+++....
T Consensus 281 Dg--~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 281 EG--NIRCFELMNERLTFC 297 (493)
T ss_pred CC--eEEEEEeeCCceEEE
Confidence 34 455556666664443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.6e-05 Score=73.37 Aligned_cols=213 Identities=15% Similarity=0.094 Sum_probs=127.3
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC
Q 005093 100 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 179 (715)
Q Consensus 100 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~ 179 (715)
+.+.|+|+++.|+-+...... ..-.-|.+|.+.|+++.+..
T Consensus 43 tyl~~~~~~~~LY~v~~~~~~---------------------------------------ggvaay~iD~~~G~Lt~ln~ 83 (346)
T COG2706 43 TYLAVNPDQRHLYVVNEPGEE---------------------------------------GGVAAYRIDPDDGRLTFLNR 83 (346)
T ss_pred ceEEECCCCCEEEEEEecCCc---------------------------------------CcEEEEEEcCCCCeEEEeec
Confidence 799999999988776544211 22456778877788887741
Q ss_pred C-CCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceec--
Q 005093 180 I-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-- 256 (715)
Q Consensus 180 ~-~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-- 256 (715)
. ........++.++||+ ++|+++-.. ..|-++.+. +.|....+
T Consensus 84 ~~~~g~~p~yvsvd~~g~-----~vf~AnY~~-------------g~v~v~p~~----------------~dG~l~~~v~ 129 (346)
T COG2706 84 QTLPGSPPCYVSVDEDGR-----FVFVANYHS-------------GSVSVYPLQ----------------ADGSLQPVVQ 129 (346)
T ss_pred cccCCCCCeEEEECCCCC-----EEEEEEccC-------------ceEEEEEcc----------------cCCcccccee
Confidence 1 1112336788999998 677764322 123333330 11221111
Q ss_pred -CCC----------CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCC
Q 005093 257 -TES----------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 325 (715)
Q Consensus 257 -t~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~ 325 (715)
... ........+.|||++|+...-. ..+++++++..+.....+... +
T Consensus 130 ~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG----------~Dri~~y~~~dg~L~~~~~~~-----v------- 187 (346)
T COG2706 130 VVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG----------TDRIFLYDLDDGKLTPADPAE-----V------- 187 (346)
T ss_pred eeecCCCCCCccccCCccceeeeCCCCCEEEEeecC----------CceEEEEEcccCccccccccc-----c-------
Confidence 111 1125567789999988766543 346888888754432222111 0
Q ss_pred CccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC---------CceeEEEeecCCEEEEEEe
Q 005093 326 CFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES---------NFSWSLLTLDGDNIIAVSS 396 (715)
Q Consensus 326 ~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~---------~~~~~~~s~~~~~l~~~~~ 396 (715)
.+ ..+...+.|.|+++..|+...-.+....|.+|...|+.++|-.... -.+..-+++||+.|+++-.
T Consensus 188 -~~---G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 188 -KP---GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred -CC---CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence 01 1356788999999999988888888899999988888877632211 1233467888877766554
Q ss_pred CCCCCCeEEEEeeccc
Q 005093 397 SPVDVPQVKYGYFVDK 412 (715)
Q Consensus 397 ~~~~p~~l~~~~~~~~ 412 (715)
+.+ .-.+|.++..++
T Consensus 264 g~d-sI~~f~V~~~~g 278 (346)
T COG2706 264 GHD-SIAVFSVDPDGG 278 (346)
T ss_pred CCC-eEEEEEEcCCCC
Confidence 444 333444554443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.8e-05 Score=71.28 Aligned_cols=229 Identities=14% Similarity=0.158 Sum_probs=128.5
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
+.+-...|+|...-+.++...+ . ...+| ..++....+....+. ..+.|||||+++++...+
T Consensus 65 ~svdql~w~~~~~d~~atas~d-k---~ir~wd~r~~k~~~~i~~~~en----------i~i~wsp~g~~~~~~~kd--- 127 (313)
T KOG1407|consen 65 DSVDQLCWDPKHPDLFATASGD-K---TIRIWDIRSGKCTARIETKGEN----------INITWSPDGEYIAVGNKD--- 127 (313)
T ss_pred cchhhheeCCCCCcceEEecCC-c---eEEEEEeccCcEEEEeeccCcc----------eEEEEcCCCCEEEEecCc---
Confidence 4566678877776666665543 2 23344 455555555543333 489999999999996332
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCcc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
..|-.+|..+-+...- ......+....|+-++.
T Consensus 128 -----------------------------------------D~it~id~r~~~~~~~--~~~~~e~ne~~w~~~nd---- 160 (313)
T KOG1407|consen 128 -----------------------------------------DRITFIDARTYKIVNE--EQFKFEVNEISWNNSND---- 160 (313)
T ss_pred -----------------------------------------ccEEEEEecccceeeh--hcccceeeeeeecCCCC----
Confidence 4466666654443322 23334566778985555
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEec
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
+.|..+ +.+-|-.+..+ .-.....|..+....--+.|+|||+++|..+.
T Consensus 161 -~Fflt~--------------GlG~v~ILsyp----------------sLkpv~si~AH~snCicI~f~p~GryfA~GsA 209 (313)
T KOG1407|consen 161 -LFFLTN--------------GLGCVEILSYP----------------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSA 209 (313)
T ss_pred -EEEEec--------------CCceEEEEecc----------------ccccccccccCCcceEEEEECCCCceEeeccc
Confidence 666653 22233344331 44566667777777788999999999987765
Q ss_pred CCCCCCCCccccceeEeeecCCCC-CCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNG-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l 359 (715)
+- .+-++|++.-- .+.++.-. -.+..+.|+-||+.| .+.+++-- |
T Consensus 210 DA-----------lvSLWD~~ELiC~R~isRld--------------------wpVRTlSFS~dg~~l-ASaSEDh~--I 255 (313)
T KOG1407|consen 210 DA-----------LVSLWDVDELICERCISRLD--------------------WPVRTLSFSHDGRML-ASASEDHF--I 255 (313)
T ss_pred cc-----------eeeccChhHhhhheeecccc--------------------CceEEEEeccCccee-eccCccce--E
Confidence 52 13334433200 11222111 135677899999844 44443322 3
Q ss_pred EEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCC
Q 005093 360 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 400 (715)
Q Consensus 360 ~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~ 400 (715)
=..+..||....=.+..+.-....|.|...-|++..+..+.
T Consensus 256 DIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 256 DIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred EeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCC
Confidence 23355666654433333322224667766666666655443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-06 Score=80.74 Aligned_cols=246 Identities=13% Similarity=0.144 Sum_probs=141.4
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
+....|||||++|+-.+-. ....+| .+|+.++-..-... .+-..-|..+-.+.||-|..-||-.+.
T Consensus 216 ~EcA~FSPDgqyLvsgSvD-----GFiEVWny~~GKlrKDLkYQAq-d~fMMmd~aVlci~FSRDsEMlAsGsq------ 283 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVD-----GFIEVWNYTTGKLRKDLKYQAQ-DNFMMMDDAVLCISFSRDSEMLASGSQ------ 283 (508)
T ss_pred hhheeeCCCCceEeecccc-----ceeeeehhccchhhhhhhhhhh-cceeecccceEEEeecccHHHhhccCc------
Confidence 5567999999999865433 477788 56666543211000 000111223357788888887766322
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc-eEeecCCCCCCccceEEEecCCCCCccE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~l~~~~~~~~~~~~~~spdg~~~~~~ 201 (715)
...|-+|.+.+|. .++.. -.....+..++||.|+..
T Consensus 284 --------------------------------------DGkIKvWri~tG~ClRrFd-rAHtkGvt~l~FSrD~Sq---- 320 (508)
T KOG0275|consen 284 --------------------------------------DGKIKVWRIETGQCLRRFD-RAHTKGVTCLSFSRDNSQ---- 320 (508)
T ss_pred --------------------------------------CCcEEEEEEecchHHHHhh-hhhccCeeEEEEccCcch----
Confidence 2568888888886 33331 233446778999999999
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCCCccccceeEcCCCCeEEEEec
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
|+-.+. +..+...-+ .+|.. ...-.+...+....|++||..++-.+.
T Consensus 321 iLS~sf---------------D~tvRiHGl-----------------KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 321 ILSASF---------------DQTVRIHGL-----------------KSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred hhcccc---------------cceEEEecc-----------------ccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 876652 122333333 44443 334445556888999999999987776
Q ss_pred CCCCCCCCccccceeEeeecCCCCCCCc--ccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNGNFSS--LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 358 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~~~~l--t~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 358 (715)
+. .+.+++..+++-..- ..+.+- .+.++...|.+-.-++..+ ..+.
T Consensus 369 Dg-----------tvkvW~~KtteC~~Tfk~~~~d~-------------------~vnsv~~~PKnpeh~iVCN--rsnt 416 (508)
T KOG0275|consen 369 DG-----------TVKVWHGKTTECLSTFKPLGTDY-------------------PVNSVILLPKNPEHFIVCN--RSNT 416 (508)
T ss_pred Cc-----------cEEEecCcchhhhhhccCCCCcc-------------------cceeEEEcCCCCceEEEEc--CCCe
Confidence 63 366777666442110 000100 1122222222211112111 2357
Q ss_pred EEEEECCCCcEEEecCCCC---CceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 359 IISVNVSSGELLRITPAES---NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 359 l~~~d~~tg~~~~l~~~~~---~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
+|.+++.+.-++..+.+.. ++-...+|+.|.++|++.+.. .+|-+...+++
T Consensus 417 v~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~----vlYCF~~~sG~ 470 (508)
T KOG0275|consen 417 VYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG----VLYCFSVLSGK 470 (508)
T ss_pred EEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc----EEEEEEeecCc
Confidence 9999996555555655432 555567899999999988654 35656665554
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-06 Score=88.64 Aligned_cols=248 Identities=14% Similarity=0.125 Sum_probs=131.5
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCC-----CchhhhhcCCCCCC
Q 005093 463 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG-----FGEEALQSLPGKVG 537 (715)
Q Consensus 463 ~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~-----~g~~~~~~~~~~~~ 537 (715)
..+.+.++.|......++.|.+++.||...... ........+++.++.++..+....++ +|............
T Consensus 31 ~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 108 (299)
T COG1073 31 IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKE--QSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFS 108 (299)
T ss_pred ceeeeEEEecCCCCccccCceEEeccCcccccc--CcchHHHHhhhceeEEeeeccccccccccccccccCccccccccc
Confidence 668888999986544478999999999554422 22226777889999988887511100 11000000000000
Q ss_pred -ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC---ceeEEEecCCcchhhhhccC-------CCC
Q 005093 538 -SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVGT-------TDI 606 (715)
Q Consensus 538 -~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~~~~~~~~~~~~-------~~~ 606 (715)
..........+..-.........+....|.+.|+..+..++...+. ..+.++...+.-........ ...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~~~~~ 188 (299)
T COG1073 109 AAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELAREL 188 (299)
T ss_pred hhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHHHHhh
Confidence 0000000111111001111223677888888888877777665542 21212111111100000000 000
Q ss_pred CCceeeec-cCCC-CCCCCCCCCChhhHHHHHhcCchhhccCCC-CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEE
Q 005093 607 PDWCYVES-YGSK-GKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 683 (715)
Q Consensus 607 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 683 (715)
........ +... ............ ...+...++...+.++. +|+|++||.+|..||...+..++...+.. +.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~ 265 (299)
T COG1073 189 IDYLITPGGFAPLPAPEAPLDTLPLR-AVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKL 265 (299)
T ss_pred hhhhccCCCCCCCCcccccccccccc-hhhhccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--CceE
Confidence 00000000 0000 000001111112 33455666777777777 69999999999999999999999888764 6778
Q ss_pred EEeCCCCccCCCCCch--HHHHHHHHHHHHHhcC
Q 005093 684 IVFPNDVHGIERPQSD--FESFLNIGLWFKKYCK 715 (715)
Q Consensus 684 ~~~~~~~H~~~~~~~~--~~~~~~i~~wl~~~l~ 715 (715)
..+++++|........ .+.+..+.+||.+++.
T Consensus 266 ~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l~ 299 (299)
T COG1073 266 LFVPGGGHIDLYDNPPAVEQALDKLAEFLERHLL 299 (299)
T ss_pred EEecCCccccccCccHHHHHHHHHHHHHHHHhcC
Confidence 8899999987753333 3789999999998863
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-05 Score=84.39 Aligned_cols=184 Identities=14% Similarity=0.182 Sum_probs=117.0
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEec--CC-ccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
..+...++||||+.||--.++ ++ ..+|+ .| =....++.+.++ ..+.|+.+|+.|+-++-+
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eD--gK---VKvWn~~SgfC~vTFteHts~V----------t~v~f~~~g~~llssSLD-- 413 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAED--GK---VKVWNTQSGFCFVTFTEHTSGV----------TAVQFTARGNVLLSSSLD-- 413 (893)
T ss_pred cceeeEEECCCCcEEEeccCC--Cc---EEEEeccCceEEEEeccCCCce----------EEEEEEecCCEEEEeecC--
Confidence 457888999999999865554 33 34552 22 122233444555 799999999888765433
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc-eEeecCCCCCCccceEEEecCCCCC
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
..+..||+.-.. .+..+ .+.......++-.|.|.
T Consensus 414 ------------------------------------------GtVRAwDlkRYrNfRTft-~P~p~QfscvavD~sGe-- 448 (893)
T KOG0291|consen 414 ------------------------------------------GTVRAWDLKRYRNFRTFT-SPEPIQFSCVAVDPSGE-- 448 (893)
T ss_pred ------------------------------------------CeEEeeeecccceeeeec-CCCceeeeEEEEcCCCC--
Confidence 457788886543 34443 44444455555666687
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCCCccccceeEcCCCCeEEE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~ 277 (715)
|++.+..+ ..+|+++++ ++|+. ..|..+++.+...+|+|+|+.||-
T Consensus 449 ---lV~AG~~d-------------~F~IfvWS~-----------------qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 449 ---LVCAGAQD-------------SFEIFVWSV-----------------QTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred ---EEEeeccc-------------eEEEEEEEe-----------------ecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 77776321 137999997 66654 577888999999999999998887
Q ss_pred EecCCCCCCCCccccceeEeeecCC--CCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 353 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~--~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~ 353 (715)
.|-+.+ +.++|+=. +....+ ++. ...-.+.|+|||+.|.+.+.+
T Consensus 496 ~SWDkT-----------VRiW~if~s~~~vEtl--------~i~-------------sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 496 GSWDKT-----------VRIWDIFSSSGTVETL--------EIR-------------SDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred ccccce-----------EEEEEeeccCceeeeE--------eec-------------cceeEEEEcCCCCeEEEEEec
Confidence 665542 55555422 122111 110 023466799999999887764
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-06 Score=77.69 Aligned_cols=118 Identities=11% Similarity=0.122 Sum_probs=72.3
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh-ccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhc
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 638 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (715)
++++|+|.|+||+.|.+++.++. + .+|+++|.+..... .... +.. .. +. .-.....+.+..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~~~i-----------g~~-~~-y~-~~~~~h~~eL~~- 121 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENMEGKI-----------DRP-EE-YA-DIATKCVTNFRE- 121 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHHHHh-----------CCC-cc-hh-hhhHHHHHHhhh-
Confidence 46999999999999999999865 3 46677787654221 1100 000 00 00 000111112210
Q ss_pred CchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 639 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 639 sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
+-.-..+++..+.|+++...++.+.+... .+..+.+|++|.|... .+.+..|++|++
T Consensus 122 -------~~p~r~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~~f---e~~l~~I~~F~~ 178 (180)
T PRK04940 122 -------KNRDRCLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFKNI---SPHLQRIKAFKT 178 (180)
T ss_pred -------cCcccEEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCCCH---HHHHHHHHHHHh
Confidence 11123689999999999877766554332 2577999999998744 356788999885
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.1e-06 Score=74.98 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC--C------CceeEEEecCCcchhhhhccCCCCCCceeeecc
Q 005093 544 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--P------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 615 (715)
Q Consensus 544 ~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (715)
+....+++.+++-.| +|+|+|.|+.++..+++.. . ..|+-+|+++|+....
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~----------------- 150 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPS----------------- 150 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCc-----------------
Confidence 344456777777666 7999999999999988721 1 1367777777753210
Q ss_pred CCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCC
Q 005093 616 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 695 (715)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 695 (715)
..... ..+...+++|.|.+.|+.|.++|...+..+++....+ .++.. .+||.+..
T Consensus 151 --------------~~~~~------~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a----~vl~H-pggH~VP~ 205 (230)
T KOG2551|consen 151 --------------KKLDE------SAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA----TVLEH-PGGHIVPN 205 (230)
T ss_pred --------------chhhh------hhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC----eEEec-CCCccCCC
Confidence 00000 1223468899999999999999999999999888653 34444 45897754
Q ss_pred CCchHHHHHHHHHHHHHhc
Q 005093 696 PQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 696 ~~~~~~~~~~i~~wl~~~l 714 (715)
.. ...+.|.+||...+
T Consensus 206 ~~---~~~~~i~~fi~~~~ 221 (230)
T KOG2551|consen 206 KA---KYKEKIADFIQSFL 221 (230)
T ss_pred ch---HHHHHHHHHHHHHH
Confidence 43 56778888887653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.9e-05 Score=81.94 Aligned_cols=165 Identities=8% Similarity=0.043 Sum_probs=96.0
Q ss_pred ccccceEEeeCCC-CceEEEEecCCCCCCeEEEEecCCcc-EE----EEecCccccccccCCCcccceeecCCCCeEEEE
Q 005093 41 EMTGASAVVPSPS-GSKLLVVRNPENESPIQFELWSQSQL-EK----EFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 114 (715)
Q Consensus 41 ~~~~~~~~~~Spd-g~~la~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~ 114 (715)
+.+.+...+|||+ +..||-.... +.-.+|.+..++.. .. +..+. +..+ .+..+.|+|++..++..
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~D--gtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~------~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSED--LTIRVWEIPHNDESVKEIKDPQCILK-GHKK------KISIIDWNPMNYYIMCS 143 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCCccccccccceEEee-cCCC------cEEEEEECCCCCeEEEE
Confidence 4467899999997 6666655433 33334443323321 11 11111 1111 23799999999887655
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecC
Q 005093 115 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 194 (715)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spd 194 (715)
+.. ...|.+||+.+++.... ......+..++|+||
T Consensus 144 gS~-------------------------------------------DgtIrIWDl~tg~~~~~--i~~~~~V~Slswspd 178 (568)
T PTZ00420 144 SGF-------------------------------------------DSFVNIWDIENEKRAFQ--INMPKKLSSLKWNIK 178 (568)
T ss_pred EeC-------------------------------------------CCeEEEEECCCCcEEEE--EecCCcEEEEEECCC
Confidence 332 25699999988875432 122345778999999
Q ss_pred CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCCCccc-----cceeE
Q 005093 195 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSA-----FFPRF 268 (715)
Q Consensus 195 g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~-----~~~~~ 268 (715)
|+. |+..+ ....|.++|+ .+++. ..+..+.+.. ....|
T Consensus 179 G~l----Lat~s---------------~D~~IrIwD~-----------------Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 179 GNL----LSGTC---------------VGKHMHIIDP-----------------RKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred CCE----EEEEe---------------cCCEEEEEEC-----------------CCCcEEEEEecccCCceeEEEEeeeE
Confidence 997 66543 2235777886 44433 3344333321 11235
Q ss_pred cCCCCeEEEEecCCCCCCCCccccceeEeeecCC
Q 005093 269 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 269 spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
++|+++|+-++... ....+|.++|+..
T Consensus 223 s~d~~~IlTtG~d~-------~~~R~VkLWDlr~ 249 (568)
T PTZ00420 223 GGDDNYILSTGFSK-------NNMREMKLWDLKN 249 (568)
T ss_pred cCCCCEEEEEEcCC-------CCccEEEEEECCC
Confidence 69999887766553 1223688899875
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.7e-06 Score=83.52 Aligned_cols=155 Identities=19% Similarity=0.120 Sum_probs=93.5
Q ss_pred CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCC--
Q 005093 183 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI-- 260 (715)
Q Consensus 183 ~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-- 260 (715)
..++....||||.+. ++-.+.. ..+++.|+ .+|..+.+.+..
T Consensus 269 ~~~V~yi~wSPDdry----LlaCg~~---------------e~~~lwDv-----------------~tgd~~~~y~~~~~ 312 (519)
T KOG0293|consen 269 SQPVSYIMWSPDDRY----LLACGFD---------------EVLSLWDV-----------------DTGDLRHLYPSGLG 312 (519)
T ss_pred cCceEEEEECCCCCe----EEecCch---------------HheeeccC-----------------CcchhhhhcccCcC
Confidence 346778999999998 8876521 13777776 677777665544
Q ss_pred ccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCcc
Q 005093 261 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 340 (715)
Q Consensus 261 ~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 340 (715)
.+..+.+|-|||..++-.+.+ .+++.+|+++.... .+..+ .-| -+..++.
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~d-----------r~i~~wdlDgn~~~----~W~gv----------r~~-----~v~dlai 362 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPD-----------RTIIMWDLDGNILG----NWEGV----------RDP-----KVHDLAI 362 (519)
T ss_pred CCcceeEEccCCceeEecCCC-----------CcEEEecCCcchhh----ccccc----------ccc-----eeEEEEE
Confidence 467889999999997655544 35888888874421 11000 001 1345567
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 341 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 341 ~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
++||++++.... ..++..++..+...+.+......+....+|.++..++. . -.+.++.+-|+.
T Consensus 363 t~Dgk~vl~v~~---d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv-n---L~~qei~LWDl~ 425 (519)
T KOG0293|consen 363 TYDGKYVLLVTV---DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV-N---LQDQEIHLWDLE 425 (519)
T ss_pred cCCCcEEEEEec---ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE-E---cccCeeEEeecc
Confidence 889998887664 24566667766665544444433333445555544333 2 244456555543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-05 Score=80.64 Aligned_cols=261 Identities=10% Similarity=0.074 Sum_probs=142.5
Q ss_pred ccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCc
Q 005093 10 LANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQ 87 (715)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (715)
..-.....+.++-+++...+ .|++--|-. -.+....|+|+|+..+|++.+. .++..| ..++..++-.. .
T Consensus 229 lvaG~d~~lrifqvDGk~N~--~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~rr----ky~ysyDle~ak~~k~~~~-~ 299 (514)
T KOG2055|consen 229 LVAGLDGTLRIFQVDGKVNP--KLQSIHLEK--FPIQKAEFAPNGHSVIFTSGRR----KYLYSYDLETAKVTKLKPP-Y 299 (514)
T ss_pred EEecCCCcEEEEEecCccCh--hheeeeecc--CccceeeecCCCceEEEecccc----eEEEEeeccccccccccCC-C
Confidence 33334444445446665542 344333222 2357779999999677765543 233334 44455544432 2
Q ss_pred cccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEE
Q 005093 88 TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVI 167 (715)
Q Consensus 88 ~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 167 (715)
+.... .+..|..|||++.|++.. ....|+++
T Consensus 300 g~e~~-----~~e~FeVShd~~fia~~G--------------------------------------------~~G~I~lL 330 (514)
T KOG2055|consen 300 GVEEK-----SMERFEVSHDSNFIAIAG--------------------------------------------NNGHIHLL 330 (514)
T ss_pred Ccccc-----hhheeEecCCCCeEEEcc--------------------------------------------cCceEEee
Confidence 22111 236899999999888852 23678888
Q ss_pred EccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccC
Q 005093 168 NINSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 247 (715)
Q Consensus 168 ~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 247 (715)
-..|++..-- ..-+..+.++.||.||+. |+.++ ..++||++|+
T Consensus 331 hakT~eli~s--~KieG~v~~~~fsSdsk~----l~~~~---------------~~GeV~v~nl---------------- 373 (514)
T KOG2055|consen 331 HAKTKELITS--FKIEGVVSDFTFSSDSKE----LLASG---------------GTGEVYVWNL---------------- 373 (514)
T ss_pred hhhhhhhhhe--eeeccEEeeEEEecCCcE----EEEEc---------------CCceEEEEec----------------
Confidence 8888764321 222345778999999987 66654 3358999998
Q ss_pred CCCCCceecCCCCc--cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeee--cCCCCCCCcccceeeeeeceecCC
Q 005093 248 SEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID--WPTNGNFSSLEKIVDVIPVVQCAE 323 (715)
Q Consensus 248 ~~~~~~~~lt~~~~--~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~--~~~~~~~~lt~~~~~~~~~~~~~~ 323 (715)
....+......++ .-.+.+.|++|++||..+... --.||-.+ +.++..+.+.. +.++
T Consensus 374 -~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G---------iVNIYd~~s~~~s~~PkPik~----~dNL----- 434 (514)
T KOG2055|consen 374 -RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG---------IVNIYDGNSCFASTNPKPIKT----VDNL----- 434 (514)
T ss_pred -CCcceEEEEeecCccceeeeeecCCCceEEeccCcc---------eEEEeccchhhccCCCCchhh----hhhh-----
Confidence 4333333222333 456778899999887666542 22344322 12222222210 0000
Q ss_pred CCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCCC---CceeEEEeecCCEEEE
Q 005093 324 GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAES---NFSWSLLTLDGDNIIA 393 (715)
Q Consensus 324 ~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~~---~~~~~~~s~~~~~l~~ 393 (715)
...+..+.|++|+..+ ...+......|-.+.+.+-.+-. ...... -+.-..|||.++.+.+
T Consensus 435 --------tt~Itsl~Fn~d~qiL-AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAv 499 (514)
T KOG2055|consen 435 --------TTAITSLQFNHDAQIL-AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAV 499 (514)
T ss_pred --------heeeeeeeeCcchhhh-hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEe
Confidence 0145678899998744 44444444555556654443322 222222 1222468887766543
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=96.76 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=66.0
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhh-c--C-----CC--------------CCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-S--L-----PG--------------KVG 537 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~-~--~-----~~--------------~~~ 537 (715)
..|+||++||.... ...|...+..|+++||.|+++|+|| ||.+... . . .. +-.
T Consensus 448 g~P~VVllHG~~g~--~~~~~~lA~~La~~Gy~VIaiDlpG---HG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~ 522 (792)
T TIGR03502 448 GWPVVIYQHGITGA--KENALAFAGTLAAAGVATIAIDHPL---HGARSFDANASGVNATNANVLAYMNLASLLVARDNL 522 (792)
T ss_pred CCcEEEEeCCCCCC--HHHHHHHHHHHHhCCcEEEEeCCCC---CCccccccccccccccccCccceeccccccccccCH
Confidence 46899999995443 4567788899999999999999999 5554111 0 0 00 011
Q ss_pred ccchhhHHHHHHHHH------Hc----CCCCCceEEEEEeChhHHHHHHHHhh
Q 005093 538 SQDVNDVLTAIDHVI------DM----GLANPSKVTVVGGSHGGFLTTHLIGQ 580 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~------~~----~~~d~~~i~l~G~S~GG~~a~~~a~~ 580 (715)
.+.+.|+......+. .. ...+..++.++||||||.++..++..
T Consensus 523 rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 523 RQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 222456666666555 11 12456899999999999999998875
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.7e-05 Score=72.93 Aligned_cols=300 Identities=13% Similarity=0.060 Sum_probs=150.1
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (715)
.+.+||. +.++. .+.++|... ..+....||.||.+||----. +.-.+|.+..++....+.+.-..+
T Consensus 86 D~AflW~--~~~ge-~~~eltgHK-----DSVt~~~FshdgtlLATGdms--G~v~v~~~stg~~~~~~~~e~~di---- 151 (399)
T KOG0296|consen 86 DLAFLWD--ISTGE-FAGELTGHK-----DSVTCCSFSHDGTLLATGDMS--GKVLVFKVSTGGEQWKLDQEVEDI---- 151 (399)
T ss_pred ceEEEEE--ccCCc-ceeEecCCC-----CceEEEEEccCceEEEecCCC--ccEEEEEcccCceEEEeecccCce----
Confidence 5667777 44443 566666555 789999999999988843221 333333333443333333222233
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCccc-CCccCceEEEEEccCC
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSG 172 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g 172 (715)
.-+.|.|-+..|++.+++. ...+|.++....-+........-.-..|.|+ |+++ ..-....|.+|++++|
T Consensus 152 ------eWl~WHp~a~illAG~~DG--svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 152 ------EWLKWHPRAHILLAGSTDG--SVWMWQIPSQALCKVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred ------EEEEecccccEEEeecCCC--cEEEEECCCcceeeEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCC
Confidence 6789999887776655443 3344444332211222223333344557777 4444 3333578999999999
Q ss_pred ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 173 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
.+.-..+...........++.+|. .++..+..... -.+.+....+..+. ++..
T Consensus 223 ~p~~~~~~~e~~~~~~~~~~~~~~-----~~~~g~~e~~~----~~~~~~sgKVv~~~------------------n~~~ 275 (399)
T KOG0296|consen 223 QPLHKITQAEGLELPCISLNLAGS-----TLTKGNSEGVA----CGVNNGSGKVVNCN------------------NGTV 275 (399)
T ss_pred ceeEEecccccCcCCccccccccc-----eeEeccCCccE----EEEccccceEEEec------------------CCCC
Confidence 765432122233344455666665 45555433210 01111112222222 1111
Q ss_pred ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccccc
Q 005093 253 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 332 (715)
Q Consensus 253 ~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~ 332 (715)
.......+....++.++|-...|=...- | .-...|.++|++....|.+......
T Consensus 276 ~~l~~~~e~~~esve~~~~ss~lpL~A~------G--~vdG~i~iyD~a~~~~R~~c~he~~------------------ 329 (399)
T KOG0296|consen 276 PELKPSQEELDESVESIPSSSKLPLAAC------G--SVDGTIAIYDLAASTLRHICEHEDG------------------ 329 (399)
T ss_pred ccccccchhhhhhhhhcccccccchhhc------c--cccceEEEEecccchhheeccCCCc------------------
Confidence 1111112222333333333322211110 1 1123588889888776665544433
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-CCCCceeEEEeecCCEEEEEE
Q 005093 333 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 333 ~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~~~~~l~~~~ 395 (715)
+..+-|.+ .. .+++...++ .++.+|..||+..-... ....+....++++++.++.++
T Consensus 330 --V~~l~w~~-t~-~l~t~c~~g--~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 330 --VTKLKWLN-TD-YLLTACANG--KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred --eEEEEEcC-cc-hheeeccCc--eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEec
Confidence 33445876 33 444444444 67777988998776543 333333345666666555443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.5e-05 Score=72.91 Aligned_cols=275 Identities=13% Similarity=0.119 Sum_probs=155.7
Q ss_pred CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEee
Q 005093 38 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 116 (715)
Q Consensus 38 ~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~ 116 (715)
++...+.+....|+|||..+|-. +..+...+| ..|.-+....+ .+..+ .+..+.|++||..|+-.+.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSg-----G~Dr~I~LWnv~gdceN~~~l-kgHsg------AVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASG-----GSDRAIVLWNVYGDCENFWVL-KGHSG------AVMELHGMRDGSHILSCGT 110 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeec-----CCcceEEEEeccccccceeee-ccccc------eeEeeeeccCCCEEEEecC
Confidence 34445778999999999988743 444555677 34433322222 12212 2389999999999988766
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccC--CccCceEEEEEccCCceEeecCCCCCCccceEEEecC
Q 005093 117 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA--GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 194 (715)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spd 194 (715)
+.+.. .|.....+...+.+......+.+. ..+-|-.+. .....++.+||..+.+..+. ....+....+.|..+
T Consensus 111 Dk~v~--~wD~~tG~~~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--~~~kyqltAv~f~d~ 185 (338)
T KOG0265|consen 111 DKTVR--GWDAETGKRIRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--FENKYQLTAVGFKDT 185 (338)
T ss_pred CceEE--EEecccceeeehhccccceeeecC-ccccCCeEEEecCCCceEEEEeecccchhhc--cccceeEEEEEeccc
Confidence 55432 344444444433333222222211 111122221 12347899999987766555 455677889999999
Q ss_pred CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCe
Q 005093 195 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 274 (715)
Q Consensus 195 g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~ 274 (715)
+.. +.... -+++|-+.|+ +...-...+..+...+.....||+|..
T Consensus 186 s~q----v~sgg---------------Idn~ikvWd~----------------r~~d~~~~lsGh~DtIt~lsls~~gs~ 230 (338)
T KOG0265|consen 186 SDQ----VISGG---------------IDNDIKVWDL----------------RKNDGLYTLSGHADTITGLSLSRYGSF 230 (338)
T ss_pred ccc----eeecc---------------ccCceeeecc----------------ccCcceEEeecccCceeeEEeccCCCc
Confidence 987 55433 2234555565 233444566777778899999999998
Q ss_pred EEEEecCCCCCCCCccccceeEeeecCCCCC--CCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEee
Q 005093 275 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGN--FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 352 (715)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~--~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~ 352 (715)
+.-.+.+. .|.++|...--. +.+. +..... - ..+...-..+|+|+++.+-+.+.
T Consensus 231 llsnsMd~-----------tvrvwd~rp~~p~~R~v~--------if~g~~-h----nfeknlL~cswsp~~~~i~ags~ 286 (338)
T KOG0265|consen 231 LLSNSMDN-----------TVRVWDVRPFAPSQRCVK--------IFQGHI-H----NFEKNLLKCSWSPNGTKITAGSA 286 (338)
T ss_pred cccccccc-----------eEEEEEecccCCCCceEE--------Eeecch-h----hhhhhcceeeccCCCCccccccc
Confidence 86555543 356666543111 1111 000000 0 01223446789999997765444
Q ss_pred eCCeeEEEEEECCCCc-EEEecCCCCCceeEEEeecCCEE
Q 005093 353 WGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNI 391 (715)
Q Consensus 353 ~~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~~~~~l 391 (715)
...+|.+|..+.. +..+....+.+....|.|...-|
T Consensus 287 ---dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~ii 323 (338)
T KOG0265|consen 287 ---DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPII 323 (338)
T ss_pred ---cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEE
Confidence 3578999986633 44455455544455666654433
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-05 Score=79.68 Aligned_cols=110 Identities=19% Similarity=0.282 Sum_probs=72.5
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHH---hCCcEEEEEcCCCCCCCchhhhhc-CCCCCCccchhh----HHHHHHHHH
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLS---SVGYSLLIVNYRGSLGFGEEALQS-LPGKVGSQDVND----VLTAIDHVI 552 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la---~~G~~vi~~d~rG~~~~g~~~~~~-~~~~~~~~~~~d----~~~~i~~l~ 552 (715)
.++|+++.|.|+. ...|...+..|. ...+.|+++.+.|. ....... ...+......+| ..+.++.+.
T Consensus 2 ~~li~~IPGNPGl--v~fY~~Fl~~L~~~l~~~~~i~~ish~Gh---~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~ 76 (266)
T PF10230_consen 2 RPLIVFIPGNPGL--VEFYEEFLSALYEKLNPQFEILGISHAGH---STSPSNSKFSPNGRLFSLQDQIEHKIDFIKELI 76 (266)
T ss_pred cEEEEEECCCCCh--HHHHHHHHHHHHHhCCCCCeeEEecCCCC---cCCcccccccCCCCccCHHHHHHHHHHHHHHHh
Confidence 4789999998876 446666666665 35899999999983 3222110 001112223333 334444444
Q ss_pred HcCCCCCceEEEEEeChhHHHHHHHHhhCC---CceeEEEecCCcc
Q 005093 553 DMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLC 595 (715)
Q Consensus 553 ~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~ 595 (715)
........++.++|||.|+++++.++.+.+ ..++.++++.|..
T Consensus 77 ~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 77 PQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 432114678999999999999999999988 6788888888864
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.1e-06 Score=90.43 Aligned_cols=107 Identities=19% Similarity=0.152 Sum_probs=65.3
Q ss_pred CccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC-CCceecCCCCcc
Q 005093 184 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISS 262 (715)
Q Consensus 184 ~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~ 262 (715)
..+.++.||||+.. ++-.+ .++.|.+++. .+ ...+.+-.+...
T Consensus 130 ~DV~Dv~Wsp~~~~----lvS~s---------------~DnsViiwn~-----------------~tF~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSL----LVSVS---------------LDNSVIIWNA-----------------KTFELLKVLRGHQSL 173 (942)
T ss_pred CccceeccCCCccE----EEEec---------------ccceEEEEcc-----------------ccceeeeeeeccccc
Confidence 35678899999986 66654 2235777775 33 344455566667
Q ss_pred ccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCC-CCCCCcccceeeeeeceecCCCCCccccccCCCCCCccc
Q 005093 263 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~-~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 341 (715)
+-..+|.|-|+++|-.+.+.+ |.++++.. +-.+.++..+... ++ ..-...+.||
T Consensus 174 VKGvs~DP~Gky~ASqsdDrt-----------ikvwrt~dw~i~k~It~pf~~~------------~~--~T~f~RlSWS 228 (942)
T KOG0973|consen 174 VKGVSWDPIGKYFASQSDDRT-----------LKVWRTSDWGIEKSITKPFEES------------PL--TTFFLRLSWS 228 (942)
T ss_pred ccceEECCccCeeeeecCCce-----------EEEEEcccceeeEeeccchhhC------------CC--cceeeecccC
Confidence 899999999999987776642 55555332 2223343322110 00 0013578899
Q ss_pred cCCCEEEEEe
Q 005093 342 SDGCTMLLSS 351 (715)
Q Consensus 342 ~dg~~l~~~~ 351 (715)
|||++|....
T Consensus 229 PDG~~las~n 238 (942)
T KOG0973|consen 229 PDGHHLASPN 238 (942)
T ss_pred CCcCeecchh
Confidence 9999665433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00016 Score=71.35 Aligned_cols=237 Identities=15% Similarity=0.171 Sum_probs=133.8
Q ss_pred eEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeec-CCCCeEEEEeecCCCCCCC
Q 005093 46 SAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN-SDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wS-pDg~~la~~~~~~~~~~~~ 124 (715)
-.|.|.+....|.|+.-. ...++.+...+....+...+. . .++.+. +|| .|++. ..
T Consensus 3 Egp~~d~~~g~l~~~D~~---~~~i~~~~~~~~~~~~~~~~~-~----------~G~~~~~~~g-~l~v~-~~------- 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIP---GGRIYRVDPDTGEVEVIDLPG-P----------NGMAFDRPDG-RLYVA-DS------- 59 (246)
T ss_dssp EEEEEETTTTEEEEEETT---TTEEEEEETTTTEEEEEESSS-E----------EEEEEECTTS-EEEEE-ET-------
T ss_pred cceEEECCCCEEEEEEcC---CCEEEEEECCCCeEEEEecCC-C----------ceEEEEccCC-EEEEE-Ec-------
Confidence 357999977788887543 347888874444445555444 3 477777 664 45443 21
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCC---C-CCCccceEEEecCCCCCcc
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI---P-KSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~---~-~~~~~~~~~~spdg~~~~~ 200 (715)
..+.++|+++++.+.+... . ......+.++.|||+
T Consensus 60 -------------------------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~---- 98 (246)
T PF08450_consen 60 -------------------------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN---- 98 (246)
T ss_dssp -------------------------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-----
T ss_pred -------------------------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC----
Confidence 3345669888887766311 1 234566889999998
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEec
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
|+++........ ......||+++. . ++.+.+..........+|||||+.|++...
T Consensus 99 -ly~t~~~~~~~~------~~~~g~v~~~~~-----------------~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 99 -LYVTDSGGGGAS------GIDPGSVYRIDP-----------------D-GKVTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp -EEEEEECCBCTT------CGGSEEEEEEET-----------------T-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred -EEEEecCCCccc------cccccceEEECC-----------------C-CeEEEEecCcccccceEECCcchheeeccc
Confidence 666643221100 000147999995 4 666666555555778999999998877665
Q ss_pred CCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
.. ..|++++++..... ++. . . .+........ .+..++...+|+ |++... +...|+
T Consensus 154 ~~----------~~i~~~~~~~~~~~-~~~-~-~--~~~~~~~~~g-------~pDG~~vD~~G~-l~va~~--~~~~I~ 208 (246)
T PF08450_consen 154 FN----------GRIWRFDLDADGGE-LSN-R-R--VFIDFPGGPG-------YPDGLAVDSDGN-LWVADW--GGGRIV 208 (246)
T ss_dssp TT----------TEEEEEEEETTTCC-EEE-E-E--EEEE-SSSSC-------EEEEEEEBTTS--EEEEEE--TTTEEE
T ss_pred cc----------ceeEEEeccccccc-eee-e-e--eEEEcCCCCc-------CCCcceEcCCCC-EEEEEc--CCCEEE
Confidence 43 35999998653321 110 0 0 0111111000 123566777886 555433 345899
Q ss_pred EEECCCCcEEEecCCCCCceeEEEe-ecCCEEEEEEe
Q 005093 361 SVNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSS 396 (715)
Q Consensus 361 ~~d~~tg~~~~l~~~~~~~~~~~~s-~~~~~l~~~~~ 396 (715)
++|+++.....+..+........|. ++.+.|+++.+
T Consensus 209 ~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 209 VFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 9999744444454442334445553 45677877654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.6e-06 Score=83.08 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=101.0
Q ss_pred CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEE-ecCccccccccCCCcccceeecCCCCeEEEEee
Q 005093 38 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 116 (715)
Q Consensus 38 ~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~ 116 (715)
+..+..++++..|.|---.|.....-+ ..-.+|.++..+...+.. .....+ ..++||++|+.++-.+-
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD-~~vklW~vy~~~~~lrtf~gH~k~V----------rd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMD-GLVKLWNVYDDRRCLRTFKGHRKPV----------RDASFNNCGTSFLSASF 278 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCC-ceEEEEEEecCcceehhhhcchhhh----------hhhhccccCCeeeeeec
Confidence 444557789999999444554332222 555677777544433322 223333 79999999999877643
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCC
Q 005093 117 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~ 196 (715)
+ ..|.+||.+||+...- ...+....-+.|.||+.
T Consensus 279 D--------------------------------------------~~lKlwDtETG~~~~~--f~~~~~~~cvkf~pd~~ 312 (503)
T KOG0282|consen 279 D--------------------------------------------RFLKLWDTETGQVLSR--FHLDKVPTCVKFHPDNQ 312 (503)
T ss_pred c--------------------------------------------eeeeeeccccceEEEE--EecCCCceeeecCCCCC
Confidence 2 5689999999987655 34445667789999997
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceec-CCCCccccceeEcCCCCeE
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFL 275 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~~~~spdg~~l 275 (715)
. +++++..+ ..|..+|+ .++++.+- -.+-+.+....|-++|++.
T Consensus 313 n----~fl~G~sd--------------~ki~~wDi-----------------Rs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 313 N----IFLVGGSD--------------KKIRQWDI-----------------RSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred c----EEEEecCC--------------CcEEEEec-----------------cchHHHHHHHhhhhheeeeEEccCCceE
Confidence 7 77776322 36888886 55554332 2334467888899999988
Q ss_pred EEEecCC
Q 005093 276 VFLSAKS 282 (715)
Q Consensus 276 ~~~~~~~ 282 (715)
+-++.+.
T Consensus 358 issSDdk 364 (503)
T KOG0282|consen 358 ISSSDDK 364 (503)
T ss_pred eeeccCc
Confidence 7776654
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.7e-07 Score=85.53 Aligned_cols=180 Identities=14% Similarity=0.156 Sum_probs=109.6
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
++.||.+|...++.-...+.+...-+||++-|..+.- . -..+.--++.||.|+..+++| |+.+.. ..+.
T Consensus 220 ks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFY---E-vG~m~tP~~lgYsvLGwNhPG---FagSTG----~P~p 288 (517)
T KOG1553|consen 220 KSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFY---E-VGVMNTPAQLGYSVLGWNHPG---FAGSTG----LPYP 288 (517)
T ss_pred eecCCcchhheeecCCCCCCCCCceEEEEecCCccce---E-eeeecChHHhCceeeccCCCC---ccccCC----CCCc
Confidence 4456777776666533222334456788888833221 0 012233458899999999999 544421 1122
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCC
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 617 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (715)
..+...+.+++.+.++.-....+.|.++|+|-||+-++++|..+|+ ++++|+-+.+-|+..+........|.
T Consensus 289 ~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLAl~rMP~~~~------- 360 (517)
T KOG1553|consen 289 VNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLALFRMPTFFS------- 360 (517)
T ss_pred ccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHHhhhchHHHH-------
Confidence 3345566677888888766778999999999999999999999997 89999888776654332111000000
Q ss_pred CCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCc
Q 005093 618 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPV 664 (715)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~ 664 (715)
.............+....+.+.+.|+++|--.+|+++..
T Consensus 361 --------giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIitt 399 (517)
T KOG1553|consen 361 --------GIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIITT 399 (517)
T ss_pred --------HHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhhc
Confidence 000011122222233344566778888888888877643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00013 Score=79.19 Aligned_cols=156 Identities=13% Similarity=0.063 Sum_probs=92.7
Q ss_pred eCCCCceEEEEecCC-CCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCC-CCeEEEEeecCCCCCCCccC
Q 005093 50 PSPSGSKLLVVRNPE-NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSL 127 (715)
Q Consensus 50 ~Spdg~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpD-g~~la~~~~~~~~~~~~~~~ 127 (715)
.+.+++++|+..... ++...+..+|..++...+..+. +..+. +..+.|+|+ +..|+-.+.
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~-gH~~~------V~~lafsP~~~~lLASgS~----------- 95 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLK-GHTSS------ILDLQFNPCFSEILASGSE----------- 95 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEc-CCCCC------EEEEEEcCCCCCEEEEEeC-----------
Confidence 455677888876543 2444566777444433333332 11122 279999998 565555432
Q ss_pred CCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce---------EeecCCCCCCccceEEEecCCCCC
Q 005093 128 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---------QAVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---------~~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
...|.+||+.++.. ..+ ......+..++|+|++..
T Consensus 96 ---------------------------------DgtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~P~g~~- 139 (568)
T PTZ00420 96 ---------------------------------DLTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWNPMNYY- 139 (568)
T ss_pred ---------------------------------CCeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEECCCCCe-
Confidence 25688888865421 122 122335778999999987
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCCCccccceeEcCCCCeEEE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~ 277 (715)
++.++.. +..|.++|+ .+++. ..+. ....+....|+|||+.|+.
T Consensus 140 ---iLaSgS~--------------DgtIrIWDl-----------------~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 140 ---IMCSSGF--------------DSFVNIWDI-----------------ENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ---EEEEEeC--------------CCeEEEEEC-----------------CCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 7665522 235777786 44432 2332 3345788999999998876
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCC
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
.+.+ ..|.++|+.++..
T Consensus 185 ~s~D-----------~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 185 TCVG-----------KHMHIIDPRKQEI 201 (568)
T ss_pred EecC-----------CEEEEEECCCCcE
Confidence 5533 2488889877543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00026 Score=70.24 Aligned_cols=267 Identities=13% Similarity=0.121 Sum_probs=138.8
Q ss_pred ccceEEeeCCCCceEEEEec---CC--CCCCeEEEEecCCc--cEEEEecCccccccccCCCcccceeecCCCCeEEEEe
Q 005093 43 TGASAVVPSPSGSKLLVVRN---PE--NESPIQFELWSQSQ--LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 115 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~---~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~ 115 (715)
+-......||||+.++.... +. +...++..+|+... ....+.++...+-.+. .....+..|+|||++++.-
T Consensus 36 g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~--~~~~~~~ls~dgk~~~V~N 113 (342)
T PF06433_consen 36 GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV--PYKNMFALSADGKFLYVQN 113 (342)
T ss_dssp ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS----GGGEEE-TTSSEEEEEE
T ss_pred ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec--ccccceEEccCCcEEEEEc
Confidence 44566788999999876432 11 24556788884443 3444455543211110 1225789999999998863
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCC
Q 005093 116 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLN 195 (715)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg 195 (715)
-. ....|-|+|++.++......+++-. .-+ |-|
T Consensus 114 ~T------------------------------------------Pa~SVtVVDl~~~kvv~ei~~PGC~--~iy---P~~ 146 (342)
T PF06433_consen 114 FT------------------------------------------PATSVTVVDLAAKKVVGEIDTPGCW--LIY---PSG 146 (342)
T ss_dssp ES------------------------------------------SSEEEEEEETTTTEEEEEEEGTSEE--EEE---EEE
T ss_pred cC------------------------------------------CCCeEEEEECCCCceeeeecCCCEE--EEE---ecC
Confidence 32 2377999999999876542123211 111 222
Q ss_pred CCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-ecCC-----CCccccceeEc
Q 005093 196 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTE-----SISSAFFPRFS 269 (715)
Q Consensus 196 ~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~-----~~~~~~~~~~s 269 (715)
+. .+... | +++.+..+.|+ +.|+.. +.+. .+.-...|.++
T Consensus 147 ~~---~F~~l-------------C--~DGsl~~v~Ld----------------~~Gk~~~~~t~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 147 NR---GFSML-------------C--GDGSLLTVTLD----------------ADGKEAQKSTKVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp TT---EEEEE-------------E--TTSCEEEEEET----------------STSSEEEEEEEESSTTTS-B-S--EEE
T ss_pred CC---ceEEE-------------e--cCCceEEEEEC----------------CCCCEeEeeccccCCCCcccccccceE
Confidence 22 02222 2 22356666653 233332 2211 11124567778
Q ss_pred CCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccC-CCCCCccccCCCEEE
Q 005093 270 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSNPWLSDGCTML 348 (715)
Q Consensus 270 pdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~dg~~l~ 348 (715)
.++.+++|.+... .||.+|+++...+.. ....+... .+....|.- +...+++.+..+.||
T Consensus 193 ~~~~~~~F~Sy~G-----------~v~~~dlsg~~~~~~-----~~~~~~t~---~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 193 RDGGRLYFVSYEG-----------NVYSADLSGDSAKFG-----KPWSLLTD---AEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp TTTTEEEEEBTTS-----------EEEEEEETTSSEEEE-----EEEESS-H---HHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred CCCCeEEEEecCC-----------EEEEEeccCCccccc-----CcccccCc---cccccCcCCcceeeeeeccccCeEE
Confidence 8888899998763 499999988664221 11111111 111112432 334566777666677
Q ss_pred EEeeeC-------CeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 349 LSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 349 ~~~~~~-------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
+.-..+ +...+|.+|+++++...-.+.........++.+..-+++..+. .-..|+++|..+++
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA--GDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET--TTTEEEEEETTT--
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC--CCCeEEEEeCcCCc
Confidence 655422 3568999999998865443322222235667777655554433 22458888876654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=68.40 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=46.5
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhh
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 528 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~ 528 (715)
|.+|....+.|++ . +..+|+++||.... ...|...++.|+++||.|+++|+|| +|.+.
T Consensus 1 G~~L~~~~w~p~~---~-~k~~v~i~HG~~eh--~~ry~~~a~~L~~~G~~V~~~D~rG---hG~S~ 58 (79)
T PF12146_consen 1 GTKLFYRRWKPEN---P-PKAVVVIVHGFGEH--SGRYAHLAEFLAEQGYAVFAYDHRG---HGRSE 58 (79)
T ss_pred CcEEEEEEecCCC---C-CCEEEEEeCCcHHH--HHHHHHHHHHHHhCCCEEEEECCCc---CCCCC
Confidence 5678888888863 2 78899999995433 3468889999999999999999999 66553
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00025 Score=72.77 Aligned_cols=278 Identities=13% Similarity=0.089 Sum_probs=148.0
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (715)
....|.++|+.++-... .+.. +...+..=.-..||.|++++|=+..+. + .+..+-. -.+.+......
T Consensus 280 e~~~l~IWDI~tG~lkr-sF~~--~~~~~~~WP~frWS~DdKy~Arm~~~s-----i-sIyEtps-f~lld~Kslki--- 346 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKR-SFPV--IKSPYLKWPIFRWSHDDKYFARMTGNS-----I-SIYETPS-FMLLDKKSLKI--- 346 (698)
T ss_pred CCceEEEEEccccchhc-ceec--cCCCccccceEEeccCCceeEEeccce-----E-EEEecCc-eeeecccccCC---
Confidence 34456666687765321 1111 001111234468999999999775432 2 2222111 22222211111
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 173 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 173 (715)
..+..++|||.+.-|||.+...... -..+-++.+-++.
T Consensus 347 ---~gIr~FswsP~~~llAYwtpe~~~~---------------------------------------parvtL~evPs~~ 384 (698)
T KOG2314|consen 347 ---SGIRDFSWSPTSNLLAYWTPETNNI---------------------------------------PARVTLMEVPSKR 384 (698)
T ss_pred ---ccccCcccCCCcceEEEEcccccCC---------------------------------------cceEEEEecCccc
Confidence 1227999999999999987543211 0223333332222
Q ss_pred eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccce-eeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 174 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~-~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
..+.. --.+.....+.|-.+|+. |.|-..+....+ .|.. .+-+|++++ +..-
T Consensus 385 ~iRt~-nlfnVsDckLhWQk~gdy----LcvkvdR~tK~~~~g~f----~n~eIfrir------------------eKdI 437 (698)
T KOG2314|consen 385 EIRTK-NLFNVSDCKLHWQKSGDY----LCVKVDRHTKSKVKGQF----SNLEIFRIR------------------EKDI 437 (698)
T ss_pred eeeec-cceeeeccEEEeccCCcE----EEEEEEeeccccccceE----eeEEEEEee------------------ccCC
Confidence 21110 112234456789999999 988776544332 2221 123677776 2222
Q ss_pred ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccccc
Q 005093 253 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 332 (715)
Q Consensus 253 ~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~ 332 (715)
......-...+-..+|-|.|++++..+.... ...-+.|-+....+.. .|....+.
T Consensus 438 pve~velke~vi~FaWEP~gdkF~vi~g~~~------k~tvsfY~~e~~~~~~-~lVk~~dk------------------ 492 (698)
T KOG2314|consen 438 PVEVVELKESVIAFAWEPHGDKFAVISGNTV------KNTVSFYAVETNIKKP-SLVKELDK------------------ 492 (698)
T ss_pred CceeeecchheeeeeeccCCCeEEEEEcccc------ccceeEEEeecCCCch-hhhhhhcc------------------
Confidence 2222223345677899999999999887652 2334455555322222 22111110
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeEEEeecCCEEEEEEeCC
Q 005093 333 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSSSP 398 (715)
Q Consensus 333 ~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~~~~~l~~~~~~~ 398 (715)
..-..+.|+|.|+.+++.........|+.+|++-...+.+..... ..+...|+|.|+.++..++..
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehh
Confidence 012466799999988887776556678888886434444433322 234457888888777655443
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-06 Score=97.42 Aligned_cols=127 Identities=24% Similarity=0.281 Sum_probs=85.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cc--hHHHHHHHhCCcEEEEEcCCC-CCCCchhhhhcCCCCCCccc
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY--SKSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-~~--~~~~~~la~~G~~vi~~d~rG-~~~~g~~~~~~~~~~~~~~~ 540 (715)
+...+|.|......+ .|++|++|||+...+.. .+ ......+..+..+|+.++||. .-|+........+++++
T Consensus 97 LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~g--- 172 (545)
T KOG1516|consen 97 LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLG--- 172 (545)
T ss_pred ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCccc---
Confidence 445688887532223 99999999988765442 22 223334566789999999994 22222222122234444
Q ss_pred hhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 005093 541 VNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 595 (715)
Q Consensus 541 ~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~ 595 (715)
..|+..|++|+.++ ..-|+++|.|+|||+||..+..+... ...+|..+|..++..
T Consensus 173 l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 173 LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 67999999999875 34699999999999999998877653 124788888777653
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-05 Score=84.14 Aligned_cols=203 Identities=12% Similarity=0.016 Sum_probs=123.4
Q ss_pred CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 38 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 38 ~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
+..+.|.+...+||||.+.|+-.+++ .+..+|.+. .....+.. . +... ++-.+.|+|-|=++|-.+-+
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED--~svRLWsl~--t~s~~V~y-~-GH~~------PVwdV~F~P~GyYFatas~D 514 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSED--SSVRLWSLD--TWSCLVIY-K-GHLA------PVWDVQFAPRGYYFATASHD 514 (707)
T ss_pred eecCCCceeeeeecccccceeeccCC--cceeeeecc--cceeEEEe-c-CCCc------ceeeEEecCCceEEEecCCC
Confidence 44455778889999999998765553 333444432 11222222 1 2211 12467789988444333322
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
.+ ...|..................+-+.|-|+..-...+.....+.+||.-+|...++- +.....+..++|||+|+.
T Consensus 515 ~t--ArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 515 QT--ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRY 591 (707)
T ss_pred ce--eeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCce
Confidence 22 234444333333334444445555567776422223334578999999999877772 233446889999999998
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC-CCceecCCCCccccceeEcCCCCeEE
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~~~~~~~spdg~~l~ 276 (715)
|+-.+ ....|.++|+ .+ .....+-.+.+.+.+.+||.||..||
T Consensus 592 ----LaSg~---------------ed~~I~iWDl-----------------~~~~~v~~l~~Ht~ti~SlsFS~dg~vLa 635 (707)
T KOG0263|consen 592 ----LASGD---------------EDGLIKIWDL-----------------ANGSLVKQLKGHTGTIYSLSFSRDGNVLA 635 (707)
T ss_pred ----Eeecc---------------cCCcEEEEEc-----------------CCCcchhhhhcccCceeEEEEecCCCEEE
Confidence 77654 2235778887 44 44556667777899999999999888
Q ss_pred EEecCCCCCCCCccccceeEeeecCC
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
-.+.+. +|-++|+..
T Consensus 636 sgg~Dn-----------sV~lWD~~~ 650 (707)
T KOG0263|consen 636 SGGADN-----------SVRLWDLTK 650 (707)
T ss_pred ecCCCC-----------eEEEEEchh
Confidence 666553 466667654
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-05 Score=71.65 Aligned_cols=181 Identities=17% Similarity=0.198 Sum_probs=107.3
Q ss_pred EEEEEcC-CCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCce
Q 005093 483 LIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 561 (715)
Q Consensus 483 ~vv~iHG-g~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~ 561 (715)
++|++-| |+|. ..-...+..|+++|+.|+.+|-+- | |.+ .....+...|+.+.+++..++ ...++
T Consensus 4 ~~v~~SGDgGw~---~~d~~~a~~l~~~G~~VvGvdsl~---Y---fw~---~rtP~~~a~Dl~~~i~~y~~~--w~~~~ 69 (192)
T PF06057_consen 4 LAVFFSGDGGWR---DLDKQIAEALAKQGVPVVGVDSLR---Y---FWS---ERTPEQTAADLARIIRHYRAR--WGRKR 69 (192)
T ss_pred EEEEEeCCCCch---hhhHHHHHHHHHCCCeEEEechHH---H---Hhh---hCCHHHHHHHHHHHHHHHHHH--hCCce
Confidence 5677777 4433 122346789999999999999432 1 111 122233477888888887776 35689
Q ss_pred EEEEEeChhHHHHHHHHhhCCC----ceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHh
Q 005093 562 VTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHS 637 (715)
Q Consensus 562 i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (715)
+.|+|+|+|+-+.-.+..+.|. +++.+++++|......... . ...++. .... ..
T Consensus 70 vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFeih---v-----~~wlg~---------~~~~-----~~ 127 (192)
T PF06057_consen 70 VVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEIH---V-----SGWLGM---------GGDD-----AA 127 (192)
T ss_pred EEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEEE---h-----hhhcCC---------CCCc-----cc
Confidence 9999999999888888877774 6788888877532110000 0 011111 0000 01
Q ss_pred cCchhhccCCC-CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 638 KSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 638 ~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
..+...+.++. .|+++++|++|.-.... .++. ..++.+..||++| |... -....+.|++-++
T Consensus 128 ~~~~pei~~l~~~~v~CiyG~~E~d~~cp-------~l~~--~~~~~i~lpGgHH-fd~d--y~~La~~Il~~l~ 190 (192)
T PF06057_consen 128 YPVIPEIAKLPPAPVQCIYGEDEDDSLCP-------SLRQ--PGVEVIALPGGHH-FDGD--YDALAKRILDALK 190 (192)
T ss_pred CCchHHHHhCCCCeEEEEEcCCCCCCcCc-------cccC--CCcEEEEcCCCcC-CCCC--HHHHHHHHHHHHh
Confidence 12333444554 58999999988642211 1322 3577889998544 6433 2345666766654
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00014 Score=74.00 Aligned_cols=215 Identities=13% Similarity=0.048 Sum_probs=110.8
Q ss_pred eEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 46 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
...++||||++|++. +.+ ....+-.++ ..++.......+... .+|..+.-.....+.||+.+.+..+........
T Consensus 108 ~~~~ls~dgk~l~V~-n~~-p~~~V~VvD~~~~kvv~ei~vp~~~--~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFY-QFS-PSPAVGVVDLEGKAFVRMMDVPDCY--HIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEe-cCC-CCCEEEEEECCCCcEEEEEeCCCCc--EEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 467899999988644 432 234566666 555555555554322 233333335567788998777655443221100
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC----CCC----C---CccceEEEec
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG----IPK----S---LSVGQVVWAP 193 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~----~~~----~---~~~~~~~~sp 193 (715)
....+...... ......|.+..|..+.-.....|+++|+.+.+...... +.. . .....++++|
T Consensus 184 ~~~vf~~~~~~------v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 184 PTEVFHPEDEY------LINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred eeeeecCCccc------cccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 00000000000 00011222211322222233889999976554333210 111 1 1222488999
Q ss_pred CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCC
Q 005093 194 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 273 (715)
Q Consensus 194 dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~ 273 (715)
||++ ++....... +..+ ....++|+++|+ ++++...-..-........+||||+
T Consensus 258 dg~~----lyV~~~~~~--~~th---k~~~~~V~ViD~-----------------~t~kvi~~i~vG~~~~~iavS~Dgk 311 (352)
T TIGR02658 258 ARDR----IYLLADQRA--KWTH---KTASRFLFVVDA-----------------KTGKRLRKIELGHEIDSINVSQDAK 311 (352)
T ss_pred CCCE----EEEEecCCc--cccc---cCCCCEEEEEEC-----------------CCCeEEEEEeCCCceeeEEECCCCC
Confidence 9997 555332111 0001 112248999997 6666544322334577899999999
Q ss_pred eEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 274 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 274 ~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
.++|..+..+ ..|.++|..+++.
T Consensus 312 p~lyvtn~~s---------~~VsViD~~t~k~ 334 (352)
T TIGR02658 312 PLLYALSTGD---------KTLYIFDAETGKE 334 (352)
T ss_pred eEEEEeCCCC---------CcEEEEECcCCeE
Confidence 6667776531 3589999887654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00016 Score=70.42 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=126.4
Q ss_pred CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 38 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 38 ~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
|..+.+.+-+.+.+|+..++| +-..+ +...+|.+..+..+-.++.....+ ....||-||.+||-.
T Consensus 60 F~~H~~svFavsl~P~~~l~a-TGGgD-D~AflW~~~~ge~~~eltgHKDSV----------t~~~FshdgtlLATG--- 124 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVA-TGGGD-DLAFLWDISTGEFAGELTGHKDSV----------TCCSFSHDGTLLATG--- 124 (399)
T ss_pred hhhcCCceEEEEeCCCCceEE-ecCCC-ceEEEEEccCCcceeEecCCCCce----------EEEEEccCceEEEec---
Confidence 444557788999999666554 32211 333444443333333343333333 799999999988762
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
. -...|.++...+|..+... ...-..+..+.|.|-+.
T Consensus 125 ------------------------------------d-----msG~v~v~~~stg~~~~~~-~~e~~dieWl~WHp~a~- 161 (399)
T KOG0296|consen 125 ------------------------------------D-----MSGKVLVFKVSTGGEQWKL-DQEVEDIEWLKWHPRAH- 161 (399)
T ss_pred ------------------------------------C-----CCccEEEEEcccCceEEEe-ecccCceEEEEeccccc-
Confidence 1 2366899999888766541 11223466789999776
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEE
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~ 277 (715)
|++.+. ..+.+|.+.++ +.+..+.+..+......-.|+||||+++-
T Consensus 162 ----illAG~--------------~DGsvWmw~ip----------------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 162 ----ILLAGS--------------TDGSVWMWQIP----------------SQALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred ----EEEeec--------------CCCcEEEEECC----------------CcceeeEecCCCCCcccccccCCCceEEE
Confidence 455442 22368888872 33556666666667888899999999876
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCC-CcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCe
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 356 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~ 356 (715)
...+ ..|.++++.+++.. .++... .. ....+....++. .++..+..+
T Consensus 208 gy~d-----------gti~~Wn~ktg~p~~~~~~~e-----------~~--------~~~~~~~~~~~~-~~~~g~~e~- 255 (399)
T KOG0296|consen 208 GYDD-----------GTIIVWNPKTGQPLHKITQAE-----------GL--------ELPCISLNLAGS-TLTKGNSEG- 255 (399)
T ss_pred EecC-----------ceEEEEecCCCceeEEecccc-----------cC--------cCCccccccccc-eeEeccCCc-
Confidence 5544 24888998887642 111110 00 112333455555 334444333
Q ss_pred eEEEEEECCCCcEEEecCC
Q 005093 357 QVIISVNVSSGELLRITPA 375 (715)
Q Consensus 357 ~~l~~~d~~tg~~~~l~~~ 375 (715)
..+.++..+|++.....+
T Consensus 256 -~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 256 -VACGVNNGSGKVVNCNNG 273 (399)
T ss_pred -cEEEEccccceEEEecCC
Confidence 455566667887776664
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.23 E-value=5e-05 Score=78.25 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=41.9
Q ss_pred hccCCCCcEEEEeeCCCCcCCchHHHH-------HHHHHHHcCCcEEEEEeCCCCcc
Q 005093 643 HISKVKTPTIFLLGAQDLRVPVSNGLQ-------YARALREKGVETKVIVFPNDVHG 692 (715)
Q Consensus 643 ~~~~i~~P~Lii~G~~D~~v~~~~~~~-------~~~~l~~~g~~~~~~~~~~~~H~ 692 (715)
.+++|++|++++.+..|.+.|+.|+.. -.+.++.+|..+.+.+.+..||-
T Consensus 292 DLr~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 292 DLRNIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred ehhhCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 467889999999999999999999843 34556777888889999999994
|
Their function is unknown. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.5e-05 Score=77.65 Aligned_cols=198 Identities=16% Similarity=0.196 Sum_probs=108.7
Q ss_pred ceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC
Q 005093 55 SKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 133 (715)
Q Consensus 55 ~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 133 (715)
+-|.|+.++ +...+..++ .+.+....+......| ..+.+||||++++.. ...
T Consensus 5 ~~l~~V~~~--~~~~v~viD~~t~~~~~~i~~~~~~h---------~~~~~s~Dgr~~yv~-~rd--------------- 57 (369)
T PF02239_consen 5 GNLFYVVER--GSGSVAVIDGATNKVVARIPTGGAPH---------AGLKFSPDGRYLYVA-NRD--------------- 57 (369)
T ss_dssp GGEEEEEEG--GGTEEEEEETTT-SEEEEEE-STTEE---------EEEE-TT-SSEEEEE-ETT---------------
T ss_pred ccEEEEEec--CCCEEEEEECCCCeEEEEEcCCCCce---------eEEEecCCCCEEEEE-cCC---------------
Confidence 345666665 334677777 5555555555433332 467899999987664 321
Q ss_pred CCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccce
Q 005093 134 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 213 (715)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~ 213 (715)
..|.++|+.+++...- .........+++||||+. ++....
T Consensus 58 ----------------------------g~vsviD~~~~~~v~~--i~~G~~~~~i~~s~DG~~----~~v~n~------ 97 (369)
T PF02239_consen 58 ----------------------------GTVSVIDLATGKVVAT--IKVGGNPRGIAVSPDGKY----VYVANY------ 97 (369)
T ss_dssp ----------------------------SEEEEEETTSSSEEEE--EE-SSEEEEEEE--TTTE----EEEEEE------
T ss_pred ----------------------------CeEEEEECCcccEEEE--EecCCCcceEEEcCCCCE----EEEEec------
Confidence 5699999999876543 233445678999999996 544432
Q ss_pred eeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-ecCCC-------CccccceeEcCCCCeEEEEecCCCCC
Q 005093 214 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVD 285 (715)
Q Consensus 214 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~-------~~~~~~~~~spdg~~l~~~~~~~~~~ 285 (715)
..+.+.++|. ++.+.. .+... ........-||+....++.-.+.
T Consensus 98 --------~~~~v~v~D~-----------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~--- 149 (369)
T PF02239_consen 98 --------EPGTVSVIDA-----------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT--- 149 (369)
T ss_dssp --------ETTEEEEEET-----------------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT---
T ss_pred --------CCCceeEecc-----------------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC---
Confidence 2237888886 444433 22211 11234455678877666555443
Q ss_pred CCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 005093 286 SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 365 (715)
Q Consensus 286 ~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~ 365 (715)
.+++++|.........+. +. .+.+ +....|+||+++++..... ...+..+|.+
T Consensus 150 -------~~I~vVdy~d~~~~~~~~--------i~---~g~~-------~~D~~~dpdgry~~va~~~--sn~i~viD~~ 202 (369)
T PF02239_consen 150 -------GEIWVVDYSDPKNLKVTT--------IK---VGRF-------PHDGGFDPDGRYFLVAANG--SNKIAVIDTK 202 (369)
T ss_dssp -------TEEEEEETTTSSCEEEEE--------EE-----TT-------EEEEEE-TTSSEEEEEEGG--GTEEEEEETT
T ss_pred -------CeEEEEEeccccccceee--------ec---cccc-------ccccccCcccceeeecccc--cceeEEEeec
Confidence 469999876643211110 00 0111 2345699999977665433 3488889998
Q ss_pred CCcEEEecC
Q 005093 366 SGELLRITP 374 (715)
Q Consensus 366 tg~~~~l~~ 374 (715)
+++...+..
T Consensus 203 ~~k~v~~i~ 211 (369)
T PF02239_consen 203 TGKLVALID 211 (369)
T ss_dssp TTEEEEEEE
T ss_pred cceEEEEee
Confidence 888776543
|
... |
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00012 Score=74.30 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=87.5
Q ss_pred CccchhhHHHHHHHHHHcCCCC--CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh--cc-CCCCCCcee
Q 005093 537 GSQDVNDVLTAIDHVIDMGLAN--PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--VG-TTDIPDWCY 611 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~~~d--~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~--~~-~~~~~~~~~ 611 (715)
|-..+-|++.|+.++..+..-- .-++.++|+|+||+++...|.-.|..+.+++--++.+-.... .+ ..+...+..
T Consensus 159 GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~ 238 (403)
T PF11144_consen 159 GIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYIC 238 (403)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccccc
Confidence 3334567788888887763222 248999999999999999999899999999987776542111 00 001000000
Q ss_pred eecc---CC----CCCCCCCCC----CC-h-hhHHHHH---hcCchhhccCC--CCcEEEEeeCCCCcCCchHHHHHHHH
Q 005093 612 VESY---GS----KGKDSFTES----PS-V-EDLTRFH---SKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARA 673 (715)
Q Consensus 612 ~~~~---~~----~~~~~~~~~----~~-~-~~~~~~~---~~sp~~~~~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (715)
.... .. ...+-+|.. |. . ......+ ....+....+. ++-.+..|+..|..+|.++-.++++.
T Consensus 239 ~~~~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~ 318 (403)
T PF11144_consen 239 SGEFFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEI 318 (403)
T ss_pred cccccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHH
Confidence 0000 00 000001100 00 0 0011111 11111112222 23456689999999999999999999
Q ss_pred HHHcCCcEEEEEeCC
Q 005093 674 LREKGVETKVIVFPN 688 (715)
Q Consensus 674 l~~~g~~~~~~~~~~ 688 (715)
+++.|.+++++.+.+
T Consensus 319 l~~lgfda~l~lIkd 333 (403)
T PF11144_consen 319 LKNLGFDATLHLIKD 333 (403)
T ss_pred HHHcCCCeEEEEecC
Confidence 999999999998843
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.8e-05 Score=76.78 Aligned_cols=209 Identities=12% Similarity=0.092 Sum_probs=112.0
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHH-hCCcE----EEEEcCCCCCCCchhhhh----c----C-CCCC---CccchhhH
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYS----LLIVNYRGSLGFGEEALQ----S----L-PGKV---GSQDVNDV 544 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la-~~G~~----vi~~d~rG~~~~g~~~~~----~----~-~~~~---~~~~~~d~ 544 (715)
-..||+||..++ ...+..++..+. +.|.+ ++.++.-|.-.+...+.. + . ..+. ......-+
T Consensus 12 tPTifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl 89 (255)
T PF06028_consen 12 TPTIFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWL 89 (255)
T ss_dssp EEEEEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHH
T ss_pred CcEEEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHH
Confidence 347899995544 557788888886 66643 444444342111111100 0 0 0111 01123445
Q ss_pred HHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC-----ceeEEEecCCcchhhhhccCCCCCCceeeeccCCCC
Q 005093 545 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 619 (715)
Q Consensus 545 ~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (715)
..++.+|.+++.+ +++-++||||||..++.++..+.. .+..+|.+++.++....... ..... .+.
T Consensus 90 ~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~--~~~~~---~~~--- 159 (255)
T PF06028_consen 90 KKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMND--DQNQN---DLN--- 159 (255)
T ss_dssp HHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC---TTTT----CS---
T ss_pred HHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccc--cchhh---hhc---
Confidence 6778888888654 789999999999999998887522 46777777776653321110 00000 000
Q ss_pred CCCCCCCCC--hhhHHHHHhcCchhhccCCCCcEEEEeeC------CCCcCCchHHHHHHHHHHHcCCcEEEEEeCC--C
Q 005093 620 KDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN--D 689 (715)
Q Consensus 620 ~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~Lii~G~------~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~--~ 689 (715)
...|. ......+...- ...+ .-.+.+|-|.|. .|-.||...+..+...++......+-.++.| +
T Consensus 160 ----~~gp~~~~~~y~~l~~~~-~~~~-p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a 233 (255)
T PF06028_consen 160 ----KNGPKSMTPMYQDLLKNR-RKNF-PKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDA 233 (255)
T ss_dssp ----TT-BSS--HHHHHHHHTH-GGGS-TTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGG
T ss_pred ----ccCCcccCHHHHHHHHHH-HhhC-CCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCC
Confidence 00011 11112221110 0111 123579999998 8899999888888777777666777777766 4
Q ss_pred CccCCCCCchHHHHHHHHHHH
Q 005093 690 VHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 690 ~H~~~~~~~~~~~~~~i~~wl 710 (715)
.|.-. +++. ++.+.|.+||
T Consensus 234 ~HS~L-heN~-~V~~~I~~FL 252 (255)
T PF06028_consen 234 QHSQL-HENP-QVDKLIIQFL 252 (255)
T ss_dssp SCCGG-GCCH-HHHHHHHHHH
T ss_pred ccccC-CCCH-HHHHHHHHHh
Confidence 78654 3443 6777888876
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00015 Score=73.90 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=103.3
Q ss_pred cCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecC-Ccchhhhhcc--CCCCC-Ccee-eeccCCCCCCCCCCCCC
Q 005093 554 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVG--TTDIP-DWCY-VESYGSKGKDSFTESPS 628 (715)
Q Consensus 554 ~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~-~~~~~~~~~~--~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 628 (715)
...++.++.+|.|.|==|..+..+|+ .++|++|++.+. ++.++..... ..... .|.+ ...|...+.......
T Consensus 166 ~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~t-- 242 (367)
T PF10142_consen 166 KFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDT-- 242 (367)
T ss_pred hcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCC--
Confidence 34567899999999999999988887 567888887543 3333321110 00011 1211 111111122122222
Q ss_pred hhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHH
Q 005093 629 VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 708 (715)
Q Consensus 629 ~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 708 (715)
....+...-.+|+.+.+++..|-||+.|..|+...++.+.-+++.|.. +..+.++|+++|+... .++...+..
T Consensus 243 p~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l~~ 315 (367)
T PF10142_consen 243 PEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYVPNAGHSLIG----SDVVQSLRA 315 (367)
T ss_pred HHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC---CeeEEeCCCCCcccch----HHHHHHHHH
Confidence 244455667899999999999999999999999999999999999964 5678999999998875 467788888
Q ss_pred HHHHhc
Q 005093 709 WFKKYC 714 (715)
Q Consensus 709 wl~~~l 714 (715)
|+...+
T Consensus 316 f~~~~~ 321 (367)
T PF10142_consen 316 FYNRIQ 321 (367)
T ss_pred HHHHHH
Confidence 887643
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00028 Score=67.74 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=62.1
Q ss_pred CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCc
Q 005093 260 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 339 (715)
Q Consensus 260 ~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 339 (715)
...+...+||+|..+++- .++. -..-||++|++..+...+.... ..+..+.
T Consensus 318 k~g~g~lafs~Ds~y~aT-rnd~--------~PnalW~Wdlq~l~l~avLiQk--------------------~piraf~ 368 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAAT-RNDK--------YPNALWLWDLQNLKLHAVLIQK--------------------HPIRAFE 368 (447)
T ss_pred ccccceeeecCCceEEee-ecCC--------CCceEEEEechhhhhhhhhhhc--------------------cceeEEE
Confidence 345788999999987753 3331 2346999999886653332111 1244567
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEE
Q 005093 340 WLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 340 ~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
|.|.--++++- .+..+||.+-+..-....+....-++....+..+|..++...
T Consensus 369 WdP~~prL~vc---tg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 369 WDPGRPRLVVC---TGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCG 421 (447)
T ss_pred eCCCCceEEEE---cCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEc
Confidence 88876666554 345689999986544444444333333345555666655443
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=79.72 Aligned_cols=90 Identities=14% Similarity=0.241 Sum_probs=65.3
Q ss_pred hHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHh
Q 005093 500 SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 579 (715)
Q Consensus 500 ~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 579 (715)
...+..|.++|..|+.++.++.. .+.. ..++.....+.+..+++.+++.. ..++|-++|+|.||.++..+++
T Consensus 129 ~s~V~~l~~~g~~vfvIsw~nPd-~~~~-----~~~~edYi~e~l~~aid~v~~it--g~~~InliGyCvGGtl~~~ala 200 (445)
T COG3243 129 KSLVRWLLEQGLDVFVISWRNPD-ASLA-----AKNLEDYILEGLSEAIDTVKDIT--GQKDINLIGYCVGGTLLAAALA 200 (445)
T ss_pred ccHHHHHHHcCCceEEEeccCch-Hhhh-----hccHHHHHHHHHHHHHHHHHHHh--CccccceeeEecchHHHHHHHH
Confidence 34788999999999999988622 1111 12222333467778888887763 3478999999999999999888
Q ss_pred hCCCc-eeEEEecCCcchh
Q 005093 580 QAPDK-FVAAAARNPLCNL 597 (715)
Q Consensus 580 ~~p~~-~~~~v~~~~~~~~ 597 (715)
.++.+ ++.+.......|+
T Consensus 201 ~~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 201 LMAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred hhhhcccccceeeecchhh
Confidence 88776 8888777666554
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00015 Score=78.37 Aligned_cols=188 Identities=16% Similarity=0.198 Sum_probs=110.5
Q ss_pred ccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEe-cCcc
Q 005093 10 LANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFH-VPQT 88 (715)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 88 (715)
-.-..+..|+++|+...+.....|...+ ..+....|+|+|+.|+..+.. +...+|.+ .+++..+.+. ....
T Consensus 219 ~s~s~D~tiriwd~~~~~~~~~~l~gH~-----~~v~~~~f~p~g~~i~Sgs~D--~tvriWd~-~~~~~~~~l~~hs~~ 290 (456)
T KOG0266|consen 219 LSGSDDKTLRIWDLKDDGRNLKTLKGHS-----TYVTSVAFSPDGNLLVSGSDD--GTVRIWDV-RTGECVRKLKGHSDG 290 (456)
T ss_pred EEecCCceEEEeeccCCCeEEEEecCCC-----CceEEEEecCCCCEEEEecCC--CcEEEEec-cCCeEEEeeeccCCc
Confidence 3344566777777844433333333333 668999999999766655443 33333333 3344444433 2333
Q ss_pred ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEE
Q 005093 89 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 168 (715)
Q Consensus 89 ~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (715)
+ +.+.|++||..|+-.+. ...|.+||
T Consensus 291 i----------s~~~f~~d~~~l~s~s~--------------------------------------------d~~i~vwd 316 (456)
T KOG0266|consen 291 I----------SGLAFSPDGNLLVSASY--------------------------------------------DGTIRVWD 316 (456)
T ss_pred e----------EEEEECCCCCEEEEcCC--------------------------------------------CccEEEEE
Confidence 3 78999999998877522 26799999
Q ss_pred ccCCceE---eecCCCCCC-ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhh
Q 005093 169 INSGEVQ---AVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 244 (715)
Q Consensus 169 ~~~g~~~---~l~~~~~~~-~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (715)
+.++..+ .+. ..... .+....|+|+|+. |+-.. .+..+-.+|+.
T Consensus 317 ~~~~~~~~~~~~~-~~~~~~~~~~~~fsp~~~~----ll~~~---------------~d~~~~~w~l~------------ 364 (456)
T KOG0266|consen 317 LETGSKLCLKLLS-GAENSAPVTSVQFSPNGKY----LLSAS---------------LDRTLKLWDLR------------ 364 (456)
T ss_pred CCCCceeeeeccc-CCCCCCceeEEEECCCCcE----EEEec---------------CCCeEEEEEcc------------
Confidence 9999832 332 11122 5788999999997 66544 11244455541
Q ss_pred ccCCCCCCceecCCCCc---cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC
Q 005093 245 ESSSEDLPVVNLTESIS---SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 306 (715)
Q Consensus 245 ~~~~~~~~~~~lt~~~~---~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~ 306 (715)
........+.... ....+..+++|+.++-.+.+ ..++++++.++...
T Consensus 365 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d-----------~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 365 ----SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED-----------GSVYVWDSSSGGIL 414 (456)
T ss_pred ----CCcceeeecccCCcceeEecccccCCCCeEEEEeCC-----------ceEEEEeCCccchh
Confidence 2222223332222 34566668888877644444 24889998876553
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00028 Score=67.42 Aligned_cols=242 Identities=14% Similarity=0.119 Sum_probs=132.5
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCC-ccEEEEecCc----cccccccCCCcccceeecCCCCeEEEEe
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS-QLEKEFHVPQ----TVHGSVYADGWFEGISWNSDETLIAYVA 115 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~wSpDg~~la~~~ 115 (715)
+-.+..+|+||-+.+++.-.++ ++-.+|.+. .+| -....+..+. ..| .+ .+.++.....+++|+-.+
T Consensus 133 dhpT~V~FapDc~s~vv~~~~g-~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh-~v----~~i~iGiA~~~k~imsas 206 (420)
T KOG2096|consen 133 DHPTRVVFAPDCKSVVVSVKRG-NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKH-QV----DIINIGIAGNAKYIMSAS 206 (420)
T ss_pred CCceEEEECCCcceEEEEEccC-CEEEEEEeeecccCCCCcccccccccccchhc-cc----ceEEEeecCCceEEEEec
Confidence 5678999999999998876654 444455555 222 2222221110 000 00 112445555555555433
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCC
Q 005093 116 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLN 195 (715)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg 195 (715)
. ...|.+|++++..+..+ ..........+.||||
T Consensus 207 ~--------------------------------------------dt~i~lw~lkGq~L~~i--dtnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 207 L--------------------------------------------DTKICLWDLKGQLLQSI--DTNQSSNYDAAVSPDG 240 (420)
T ss_pred C--------------------------------------------CCcEEEEecCCceeeee--ccccccccceeeCCCC
Confidence 2 26699999996666666 3333456678899999
Q ss_pred CCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC------ceecCCCCccccceeEc
Q 005093 196 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP------VVNLTESISSAFFPRFS 269 (715)
Q Consensus 196 ~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~lt~~~~~~~~~~~s 269 (715)
+. |+.++-..+ ..+|..=+. ..|+ .-.|..+...+...+||
T Consensus 241 RF----ia~~gFTpD-------------VkVwE~~f~----------------kdG~fqev~rvf~LkGH~saV~~~aFs 287 (420)
T KOG2096|consen 241 RF----IAVSGFTPD-------------VKVWEPIFT----------------KDGTFQEVKRVFSLKGHQSAVLAAAFS 287 (420)
T ss_pred cE----EEEecCCCC-------------ceEEEEEec----------------cCcchhhhhhhheeccchhheeeeeeC
Confidence 98 887763322 234433220 2222 22344455568889999
Q ss_pred CCCCeEEEEecCCCCCCCCccccceeEeeecC---CCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCE
Q 005093 270 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP---TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 346 (715)
Q Consensus 270 pdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~---~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~ 346 (715)
++.++++-++.+. ..+||-.|+. +...+.|-.+. .++-.. + ...-.+..+|+|+.
T Consensus 288 n~S~r~vtvSkDG---------~wriwdtdVrY~~~qDpk~Lk~g~---~pl~aa---g-------~~p~RL~lsP~g~~ 345 (420)
T KOG2096|consen 288 NSSTRAVTVSKDG---------KWRIWDTDVRYEAGQDPKILKEGS---APLHAA---G-------SEPVRLELSPSGDS 345 (420)
T ss_pred CCcceeEEEecCC---------cEEEeeccceEecCCCchHhhcCC---cchhhc---C-------CCceEEEeCCCCcE
Confidence 9999998888763 2345533321 11112121110 000000 0 12235668999986
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEEecCC--CCCceeEEEeecCCEEEEEE
Q 005093 347 MLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 347 l~~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~~~~~l~~~~ 395 (715)
+.++. + ..|-.+..++|+...-... ...++..+|+++|..++...
T Consensus 346 lA~s~--g--s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 346 LAVSF--G--SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred EEeec--C--CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 55533 2 3455566667776554332 22466678899988777554
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00018 Score=75.16 Aligned_cols=227 Identities=15% Similarity=0.176 Sum_probs=141.6
Q ss_pred eEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 005093 46 SAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 123 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 123 (715)
....|| ....||..-.. .+| +| ..+....+.+.. .+ .+..+.|+++|++|+....
T Consensus 181 nlldWs-s~n~laValg~-----~vy-lW~~~s~~v~~l~~~~---~~------~vtSv~ws~~G~~LavG~~------- 237 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQ-----SVY-LWSASSGSVTELCSFG---EE------LVTSVKWSPDGSHLAVGTS------- 237 (484)
T ss_pred hHhhcc-cCCeEEEEecc-----eEE-EEecCCCceEEeEecC---CC------ceEEEEECCCCCEEEEeec-------
Confidence 446778 44455543221 234 56 567777776652 11 2389999999999999532
Q ss_pred CccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEE
Q 005093 124 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 203 (715)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~ 203 (715)
...|.+||.+..+...-........+..++|. .. ++
T Consensus 238 -------------------------------------~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~----~l 273 (484)
T KOG0305|consen 238 -------------------------------------DGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SS----VL 273 (484)
T ss_pred -------------------------------------CCeEEEEehhhccccccccCCcCceeEEEecc---Cc----eE
Confidence 36699999876554332101134457788898 23 44
Q ss_pred EEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-ecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 204 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
-++. +...|..+|+ ....... .+..+...+....|++||++||-..+++
T Consensus 274 ssGs--------------r~~~I~~~dv----------------R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN 323 (484)
T KOG0305|consen 274 SSGS--------------RDGKILNHDV----------------RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDN 323 (484)
T ss_pred EEec--------------CCCcEEEEEE----------------ecchhhhhhhhcccceeeeeEECCCCCeeccCCCcc
Confidence 4442 3335666665 1222222 2555666788999999999997555443
Q ss_pred CCCCCCccccceeEeeecCCCCC-CCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 005093 283 SVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 361 (715)
Q Consensus 283 ~~~~g~~~~~~~l~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~ 361 (715)
.++++|....+. ..++... ..+..++|+|-..-|+.+........|..
T Consensus 324 -----------~~~Iwd~~~~~p~~~~~~H~--------------------aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 324 -----------VVFIWDGLSPEPKFTFTEHT--------------------AAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred -----------ceEeccCCCccccEEEeccc--------------------eeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 477777633222 2222211 13446678886666888877666778888
Q ss_pred EECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCC
Q 005093 362 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 400 (715)
Q Consensus 362 ~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~ 400 (715)
+|..+|+..........+....|++..++|+.+..-...
T Consensus 373 wn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 373 WNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred EEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCC
Confidence 999999988877766656667889998888766544433
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00063 Score=79.41 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=56.4
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEec-CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~sp-dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
..|.+||+.+++..... ......+..+.|+| |+. ++.++. .+..|.++|+
T Consensus 555 g~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~-----~L~Sgs--------------~Dg~v~iWd~--------- 605 (793)
T PLN00181 555 GVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPT-----LLASGS--------------DDGSVKLWSI--------- 605 (793)
T ss_pred CeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCC-----EEEEEc--------------CCCEEEEEEC---------
Confidence 66999999887654331 23334577899997 555 444442 2235777776
Q ss_pred hhhhccCCCCCCc-eecCCCCccccceeE-cCCCCeEEEEecCCCCCCCCccccceeEeeecCCCC
Q 005093 241 LELKESSSEDLPV-VNLTESISSAFFPRF-SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 304 (715)
Q Consensus 241 ~~~~~~~~~~~~~-~~lt~~~~~~~~~~~-spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~ 304 (715)
.++.. ..+. ....+....| +++|+.|+..+.+. .|+++|+.+..
T Consensus 606 --------~~~~~~~~~~-~~~~v~~v~~~~~~g~~latgs~dg-----------~I~iwD~~~~~ 651 (793)
T PLN00181 606 --------NQGVSIGTIK-TKANICCVQFPSESGRSLAFGSADH-----------KVYYYDLRNPK 651 (793)
T ss_pred --------CCCcEEEEEe-cCCCeEEEEEeCCCCCEEEEEeCCC-----------eEEEEECCCCC
Confidence 33332 2332 2234566777 46788887766542 48888886543
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00015 Score=64.05 Aligned_cols=140 Identities=12% Similarity=0.085 Sum_probs=91.4
Q ss_pred CCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeec
Q 005093 535 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 614 (715)
Q Consensus 535 ~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (715)
+|.....+|..+.++..+... ++.++|++||.|+..++.++.+....++++++++|..--...
T Consensus 37 ~w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~-------------- 99 (181)
T COG3545 37 DWEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE-------------- 99 (181)
T ss_pred CCCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc--------------
Confidence 454555777777766555542 456999999999999999998776789999999986321100
Q ss_pred cCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCC
Q 005093 615 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 694 (715)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 694 (715)
........++|.. ..++.-|.++++..+|+.|+++.+..+.++... .++....+||-..
T Consensus 100 ---------------~~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHiN~ 158 (181)
T COG3545 100 ---------------IRPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHINA 158 (181)
T ss_pred ---------------cchhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheecccccccch
Confidence 0001111122211 233446899999999999999999999888854 4777888888432
Q ss_pred --CCCchHHHHHHHHHHHHH
Q 005093 695 --RPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 695 --~~~~~~~~~~~i~~wl~~ 712 (715)
......+.+..+.+++.+
T Consensus 159 ~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 159 ESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred hhcCCCcHHHHHHHHHHhhh
Confidence 123333445555555543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.9e-05 Score=84.24 Aligned_cols=194 Identities=18% Similarity=0.169 Sum_probs=113.7
Q ss_pred cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCc-cCceEEEEEccCCceEe
Q 005093 98 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK-RQPSLFVININSGEVQA 176 (715)
Q Consensus 98 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~ 176 (715)
++-+.+||||.++|+-.+++...+ .|.+..............+.-.+.|.|. |-.++.- ...+-.+|..+...+.+
T Consensus 453 PVyg~sFsPd~rfLlScSED~svR--LWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVR--LWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred ceeeeeecccccceeeccCCccee--eeecccceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchh
Confidence 446899999999998888876654 3443333222222222223333344444 3222211 12333555555555555
Q ss_pred ecCCCCCC-ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCcee
Q 005093 177 VKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN 255 (715)
Q Consensus 177 l~~~~~~~-~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (715)
+ ..+.. .+.-+.|.|+... ++ ++.. .+..++|.+. .+..++.
T Consensus 530 i--faghlsDV~cv~FHPNs~Y----~a-TGSs------------D~tVRlWDv~------------------~G~~VRi 572 (707)
T KOG0263|consen 530 I--FAGHLSDVDCVSFHPNSNY----VA-TGSS------------DRTVRLWDVS------------------TGNSVRI 572 (707)
T ss_pred h--hcccccccceEEECCcccc----cc-cCCC------------CceEEEEEcC------------------CCcEEEE
Confidence 5 34443 3455889999885 44 3311 1223455443 5667777
Q ss_pred cCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCC
Q 005093 256 LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSI 335 (715)
Q Consensus 256 lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~ 335 (715)
.+.+.+.+...+|||+|++|+-.+... .|.++|+.++..... +.|+ ...+
T Consensus 573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~-----------~I~iWDl~~~~~v~~------------------l~~H-t~ti 622 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGRYLASGDEDG-----------LIKIWDLANGSLVKQ------------------LKGH-TGTI 622 (707)
T ss_pred ecCCCCceEEEEEcCCCceEeecccCC-----------cEEEEEcCCCcchhh------------------hhcc-cCce
Confidence 788888999999999999998666542 488899988654211 1111 2356
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 005093 336 LSNPWLSDGCTMLLSSIWGSSQVIISVNV 364 (715)
Q Consensus 336 ~~~~~~~dg~~l~~~~~~~~~~~l~~~d~ 364 (715)
..+.|+.||. ++++...+...+|| |+
T Consensus 623 ~SlsFS~dg~-vLasgg~DnsV~lW--D~ 648 (707)
T KOG0263|consen 623 YSLSFSRDGN-VLASGGADNSVRLW--DL 648 (707)
T ss_pred eEEEEecCCC-EEEecCCCCeEEEE--Ec
Confidence 7888999998 55555444455566 54
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0002 Score=68.36 Aligned_cols=244 Identities=14% Similarity=0.122 Sum_probs=122.8
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
....+||+-|.+||.--.++ .--+|.+..-+..+-+...... +.++.||+||++|+-.+.+-.. .+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG--~vvI~D~~T~~iar~lsaH~~p----------i~sl~WS~dgr~LltsS~D~si--~l 91 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANG--RVVIYDFDTFRIARMLSAHVRP----------ITSLCWSRDGRKLLTSSRDWSI--KL 91 (405)
T ss_pred cceEEeccCcceeeeeccCC--cEEEEEccccchhhhhhccccc----------eeEEEecCCCCEeeeecCCcee--EE
Confidence 56789999999999876653 3334433333322222222222 3799999999999887655322 12
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcc-cCCcCcccCCccCceEEEEEccCCceEeec-----------CCCCC--CccceEE
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDW-EEDWGETYAGKRQPSLFVININSGEVQAVK-----------GIPKS--LSVGQVV 190 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~-----------~~~~~--~~~~~~~ 190 (715)
|.+-... ...+++| .|=|+..+...+++...+--.+. .+..+. ..+++ .......
T Consensus 92 wDl~~gs----------~l~rirf~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 92 WDLLKGS----------PLKRIRFDSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSDPKHSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred EeccCCC----------ceeEEEccCccceeeeccccCCeEEEEEecC-CcEEEEecCCceeeccCCCcccccccccccc
Confidence 2221111 1112222 23344444433333333333322 222221 00111 1112223
Q ss_pred EecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce---ecCCCCcccccee
Q 005093 191 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV---NLTESISSAFFPR 267 (715)
Q Consensus 191 ~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~lt~~~~~~~~~~ 267 (715)
|.+.|+. ++++. ..+.|.+++. .+.+.. +++. -..+.+..
T Consensus 161 fdr~g~y-----IitGt--------------sKGkllv~~a-----------------~t~e~vas~rits-~~~IK~I~ 203 (405)
T KOG1273|consen 161 FDRRGKY-----IITGT--------------SKGKLLVYDA-----------------ETLECVASFRITS-VQAIKQII 203 (405)
T ss_pred ccCCCCE-----EEEec--------------CcceEEEEec-----------------chheeeeeeeech-heeeeEEE
Confidence 6666663 34442 2235666665 333321 2222 23577888
Q ss_pred EcCCCCeEEEEecCCCCCCCCccccceeEeeecCC----CCCCCcc--cceeeeeeceecCCCCCccccccCCCCCCccc
Q 005093 268 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT----NGNFSSL--EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341 (715)
Q Consensus 268 ~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~----~~~~~lt--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 341 (715)
+|-.|+.|++.+.++- |.++++.. +....++ ...-++++- ..-...+|+
T Consensus 204 ~s~~g~~liiNtsDRv-----------IR~ye~~di~~~~r~~e~e~~~K~qDvVNk--------------~~Wk~ccfs 258 (405)
T KOG1273|consen 204 VSRKGRFLIINTSDRV-----------IRTYEISDIDDEGRDGEVEPEHKLQDVVNK--------------LQWKKCCFS 258 (405)
T ss_pred EeccCcEEEEecCCce-----------EEEEehhhhcccCccCCcChhHHHHHHHhh--------------hhhhheeec
Confidence 9999999988776642 34444321 1111111 000011110 012467789
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 005093 342 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 377 (715)
Q Consensus 342 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 377 (715)
.||.+++..+ .....||.+....|...++..+..
T Consensus 259 ~dgeYv~a~s--~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 259 GDGEYVCAGS--ARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred CCccEEEecc--ccceeEEEEecCCcceeeeecCCc
Confidence 9999777666 334579999988999998877654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0013 Score=64.63 Aligned_cols=250 Identities=15% Similarity=0.139 Sum_probs=134.9
Q ss_pred ccceEEeeCC-CCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Sp-dg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
++.-..+.+| ++..+||.++.+ ...+.++ .+|+..+....+.+.| + +..-.|||||++|+- ++....
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG---~~~~v~D~~~g~~~~~~~a~~gRH--F-----yGHg~fs~dG~~Lyt-TEnd~~ 73 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPG---TFALVFDCRTGQLLQRLWAPPGRH--F-----YGHGVFSPDGRLLYT-TENDYE 73 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCC---cEEEEEEcCCCceeeEEcCCCCCE--E-----ecCEEEcCCCCEEEE-eccccC
Confidence 3456678899 555555555543 2344455 6666665555444443 1 147789999997754 443211
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec-CCCCCCccceEEEecCCCCCc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~-~~~~~~~~~~~~~spdg~~~~ 199 (715)
.++..|-|||... ..+++. -....+...++.|.|||+.
T Consensus 74 --------------------------------------~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~t-- 112 (305)
T PF07433_consen 74 --------------------------------------TGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGET-- 112 (305)
T ss_pred --------------------------------------CCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCE--
Confidence 1357899999983 333331 1344566778999999998
Q ss_pred cEEEEEeec---C---ccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-ee--cCC--CCccccceeE
Q 005093 200 QYLVFVGWS---S---ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN--LTE--SISSAFFPRF 268 (715)
Q Consensus 200 ~~i~~~~~~---~---~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--lt~--~~~~~~~~~~ 268 (715)
|+...-- . +..++... .=+..|..+|. .+|+. .+ |.. ..-+++..++
T Consensus 113 --LvVANGGI~Thpd~GR~kLNl~---tM~psL~~ld~-----------------~sG~ll~q~~Lp~~~~~lSiRHLa~ 170 (305)
T PF07433_consen 113 --LVVANGGIETHPDSGRAKLNLD---TMQPSLVYLDA-----------------RSGALLEQVELPPDLHQLSIRHLAV 170 (305)
T ss_pred --EEEEcCCCccCcccCceecChh---hcCCceEEEec-----------------CCCceeeeeecCccccccceeeEEe
Confidence 7764210 0 11111111 11235777875 56653 33 422 3346899999
Q ss_pred cCCCCeEEEEecCCCCCCCCccccce-eEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEE
Q 005093 269 SPDGKFLVFLSAKSSVDSGAHSATDS-LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 347 (715)
Q Consensus 269 spdg~~l~~~~~~~~~~~g~~~~~~~-l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l 347 (715)
++||. ++|...-. |......- |.+.+ .++...+.....+. + ..+. .-..+++++++|..+
T Consensus 171 ~~~G~-V~~a~Q~q----g~~~~~~PLva~~~--~g~~~~~~~~p~~~---~-----~~l~----~Y~gSIa~~~~g~~i 231 (305)
T PF07433_consen 171 DGDGT-VAFAMQYQ----GDPGDAPPLVALHR--RGGALRLLPAPEEQ---W-----RRLN----GYIGSIAADRDGRLI 231 (305)
T ss_pred cCCCc-EEEEEecC----CCCCccCCeEEEEc--CCCcceeccCChHH---H-----HhhC----CceEEEEEeCCCCEE
Confidence 99997 54554432 21111112 33332 22322221111000 0 0111 123577789999988
Q ss_pred EEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCE
Q 005093 348 LLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDN 390 (715)
Q Consensus 348 ~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~ 390 (715)
.+++-.++...+ +|.++|+......-.. ...+++.++.
T Consensus 232 a~tsPrGg~~~~--~d~~tg~~~~~~~l~D---~cGva~~~~~ 269 (305)
T PF07433_consen 232 AVTSPRGGRVAV--WDAATGRLLGSVPLPD---ACGVAPTDDG 269 (305)
T ss_pred EEECCCCCEEEE--EECCCCCEeeccccCc---eeeeeecCCc
Confidence 887776664444 4888999887665432 3455554444
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0011 Score=68.13 Aligned_cols=262 Identities=13% Similarity=0.171 Sum_probs=139.0
Q ss_pred cceEEeeCCCCceEEEEecCC------CCCCeEEEEe--cCCccEEEEecCccc-cccccCCCcccceeecCCCCeEEEE
Q 005093 44 GASAVVPSPSGSKLLVVRNPE------NESPIQFELW--SQSQLEKEFHVPQTV-HGSVYADGWFEGISWNSDETLIAYV 114 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wSpDg~~la~~ 114 (715)
++....+||..++|+--+... +...+...|| .+|...+.+.+..+. ..+ .-++||-|++++|-+
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~W-------P~frWS~DdKy~Arm 323 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKW-------PIFRWSHDDKYFARM 323 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCcccc-------ceEEeccCCceeEEe
Confidence 456666677777665433211 1223455566 566666655442111 011 368999999998886
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecC
Q 005093 115 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 194 (715)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spd 194 (715)
.... +..-..+..+++|.++= .+ ..+.+++|||-
T Consensus 324 ~~~s-------------------------------------isIyEtpsf~lld~Ksl---ki------~gIr~FswsP~ 357 (698)
T KOG2314|consen 324 TGNS-------------------------------------ISIYETPSFMLLDKKSL---KI------SGIRDFSWSPT 357 (698)
T ss_pred ccce-------------------------------------EEEEecCceeeeccccc---CC------ccccCcccCCC
Confidence 4311 00001133444443221 12 24678999999
Q ss_pred CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCe
Q 005093 195 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 274 (715)
Q Consensus 195 g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~ 274 (715)
+.- |+|=+-... +-+..+-++.++ ...+++..--........-|-..|++
T Consensus 358 ~~l----lAYwtpe~~----------~~parvtL~evP----------------s~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 358 SNL----LAYWTPETN----------NIPARVTLMEVP----------------SKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred cce----EEEEccccc----------CCcceEEEEecC----------------ccceeeeccceeeeccEEEeccCCcE
Confidence 998 888653221 233355556652 22222222112334667889999999
Q ss_pred EEEEecCCCCCC-CCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee
Q 005093 275 LVFLSAKSSVDS-GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 353 (715)
Q Consensus 275 l~~~~~~~~~~~-g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~ 353 (715)
|.|--.+.+-.. +......+|++++-.. . .+ +++++- ..+-.++|-|.|+.+.+.+..
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKd--I-pv-----e~velk-------------e~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKD--I-PV-----EVVELK-------------ESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccC--C-Cc-----eeeecc-------------hheeeeeeccCCCeEEEEEcc
Confidence 998876643210 1111223456554221 1 11 111110 134577899999987776664
Q ss_pred CC--eeEEEEEECCCCcEEEecCCC-CCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 354 GS--SQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 354 ~~--~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
.. +.+.|.+....++...+..-+ .......|||.|+.++...-.. +-..++.+|.+
T Consensus 467 ~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~ 525 (698)
T KOG2314|consen 467 TVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTD 525 (698)
T ss_pred ccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecc
Confidence 43 446777775445544332211 1223468899999887766444 45567777754
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.5e-05 Score=75.65 Aligned_cols=232 Identities=14% Similarity=0.148 Sum_probs=128.2
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCcccccccc
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVY 94 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (715)
.++++++-+.+.-.++ |-.+...+....||++|..+.-.+-+ ....+| .+|+....+.+..-.
T Consensus 238 ~vklW~vy~~~~~lrt-----f~gH~k~Vrd~~~s~~g~~fLS~sfD-----~~lKlwDtETG~~~~~f~~~~~~----- 302 (503)
T KOG0282|consen 238 LVKLWNVYDDRRCLRT-----FKGHRKPVRDASFNNCGTSFLSASFD-----RFLKLWDTETGQVLSRFHLDKVP----- 302 (503)
T ss_pred eEEEEEEecCcceehh-----hhcchhhhhhhhccccCCeeeeeecc-----eeeeeeccccceEEEEEecCCCc-----
Confidence 3444446555542222 22233568899999999998765443 356677 466665555554444
Q ss_pred CCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce
Q 005093 95 ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV 174 (715)
Q Consensus 95 ~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 174 (715)
..+.+.||+.+++++.. ....|..||..+|++
T Consensus 303 -----~cvkf~pd~~n~fl~G~-------------------------------------------sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 303 -----TCVKFHPDNQNIFLVGG-------------------------------------------SDKKIRQWDIRSGKV 334 (503)
T ss_pred -----eeeecCCCCCcEEEEec-------------------------------------------CCCcEEEEeccchHH
Confidence 78999999988877632 225688888888875
Q ss_pred EeecCCCCCC-ccceEEEecCCCCCccEEEEEeecCccc----------------------------eeeeeeeecCCce
Q 005093 175 QAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETR----------------------------KLGIKYCYNRPCA 225 (715)
Q Consensus 175 ~~l~~~~~~~-~~~~~~~spdg~~~~~~i~~~~~~~~~~----------------------------~~g~~~~~~~~~~ 225 (715)
.+- -...+ .+....|-|+|++ .+.++....-+ ..+|..+.+-.+.
T Consensus 335 vqe--Yd~hLg~i~~i~F~~~g~r----FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 335 VQE--YDRHLGAILDITFVDEGRR----FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY 408 (503)
T ss_pred HHH--HHhhhhheeeeEEccCCce----EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence 443 11111 3456677777777 66554322100 0112222223334
Q ss_pred EEEEecccccchhhhhhhhccCCCCCCceecCC--CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCC
Q 005093 226 LYAVRVSLYKSEASELELKESSSEDLPVVNLTE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 303 (715)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~--~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 303 (715)
|+.+.+ ...+++ ...++... -.+......|||||++|+..+.+ ..++.+|+.+-
T Consensus 409 i~ifs~----~~~~r~---------nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd-----------G~v~~wdwkt~ 464 (503)
T KOG0282|consen 409 IAIFST----VPPFRL---------NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD-----------GKVNFWDWKTT 464 (503)
T ss_pred EEEEec----cccccc---------CHhhhhcceeccCceeeEEEcCCCCeEEeecCC-----------ccEEEeechhh
Confidence 444432 011111 11111111 13456778999999999766554 24899999875
Q ss_pred CCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 304 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 304 ~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
+....-.. +......+.|.|-....+++..+.|...+|
T Consensus 465 kl~~~lka-------------------h~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 465 KLVSKLKA-------------------HDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred hhhhcccc-------------------CCcceEEEEecCCCcceeEecccCceeEec
Confidence 43211110 111223556888777777777777765554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0035 Score=63.02 Aligned_cols=190 Identities=18% Similarity=0.156 Sum_probs=101.8
Q ss_pred eEEEEEccCCce-EeecCCCC---CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh
Q 005093 163 SLFVININSGEV-QAVKGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238 (715)
Q Consensus 163 ~l~~~~~~~g~~-~~l~~~~~---~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 238 (715)
.+++++++++.. +.+..... .....+....|||+ |+|..-.... .+... ......||++|.
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-----~wfgt~~~~~--~~~~~-~~~~G~lyr~~p------- 150 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-----IWFGDMGYFD--LGKSE-ERPTGSLYRVDP------- 150 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-----EEEeCCCccc--cCccc-cCCcceEEEEcC-------
Confidence 356666665555 44421111 12345678899998 7776543100 11110 112236999994
Q ss_pred hhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeec
Q 005093 239 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 318 (715)
Q Consensus 239 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~ 318 (715)
.++..+.+.........++|||||+.|+++.... ..|++++++.... .+... ...
T Consensus 151 ----------~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~----------~~i~r~~~d~~~g-~~~~~----~~~ 205 (307)
T COG3386 151 ----------DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA----------NRIHRYDLDPATG-PIGGR----RGF 205 (307)
T ss_pred ----------CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC----------CeEEEEecCcccC-ccCCc----ceE
Confidence 4455555555466678899999999888887653 4688888764110 11100 011
Q ss_pred eecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEE-eecCCEEEEEEeC
Q 005093 319 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSS 397 (715)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~-s~~~~~l~~~~~~ 397 (715)
..... .+| ....++-..+|. |+.....+ ...+.+++++......+..+....+...| .++.+.|++++..
T Consensus 206 ~~~~~---~~G----~PDG~~vDadG~-lw~~a~~~-g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 206 VDFDE---EPG----LPDGMAVDADGN-LWVAAVWG-GGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEccC---CCC----CCCceEEeCCCC-EEEecccC-CceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 11111 111 234555666776 44433333 35788889884445555444232233333 2456788888877
Q ss_pred CCCC
Q 005093 398 PVDV 401 (715)
Q Consensus 398 ~~~p 401 (715)
...+
T Consensus 277 ~~~~ 280 (307)
T COG3386 277 SGMS 280 (307)
T ss_pred CCCC
Confidence 7665
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00096 Score=62.59 Aligned_cols=151 Identities=16% Similarity=0.218 Sum_probs=86.1
Q ss_pred cccceEEeeCCC-CceEEEEecCCCCCCeEEEEe-cC-CccE-EEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 42 MTGASAVVPSPS-GSKLLVVRNPENESPIQFELW-SQ-SQLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 42 ~~~~~~~~~Spd-g~~la~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
.+++...+|+|- |..||--.. ..-..+| .. +..- -.+.+..+....| ..++|||.|++|+-.+.+
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~-----Dk~vriw~~~~~~s~~ck~vld~~hkrsV------RsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGT-----DKAVRIWSTSSGDSWTCKTVLDDGHKRSV------RSVAWSPHGRYLASASFD 82 (312)
T ss_pred CCcEEEEEeccCCceEEEeecC-----CceEEEEecCCCCcEEEEEeccccchhee------eeeeecCCCcEEEEeecc
Confidence 377899999998 775553322 2345566 33 2222 2222222222223 799999999988887654
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCC-CCCccceEEEecCCC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNE 196 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~~~~~~~~~~spdg~ 196 (715)
. .+.+|--..++..-+.... .+..+-.++||++|+
T Consensus 83 ~--------------------------------------------t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~ 118 (312)
T KOG0645|consen 83 A--------------------------------------------TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN 118 (312)
T ss_pred c--------------------------------------------eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC
Confidence 3 2223322233333221011 123466789999999
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce---ecCCCCccccceeEcCCCC
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV---NLTESISSAFFPRFSPDGK 273 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~lt~~~~~~~~~~~spdg~ 273 (715)
. |+..+ |.-.+|...++ ++.+.. .|+++...+....|.|.-.
T Consensus 119 ~----LATCS---------------RDKSVWiWe~d----------------eddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 119 Y----LATCS---------------RDKSVWIWEID----------------EDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred E----EEEee---------------CCCeEEEEEec----------------CCCcEEEEeeeccccccccEEEEcCCcc
Confidence 8 88876 22345555541 455544 3455555678889999766
Q ss_pred eEEEEecCC
Q 005093 274 FLVFLSAKS 282 (715)
Q Consensus 274 ~l~~~~~~~ 282 (715)
-|+-.+.++
T Consensus 164 lL~S~SYDn 172 (312)
T KOG0645|consen 164 LLFSCSYDN 172 (312)
T ss_pred eeEEeccCC
Confidence 666555554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0019 Score=60.53 Aligned_cols=176 Identities=13% Similarity=0.126 Sum_probs=109.7
Q ss_pred cCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 160 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 160 ~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
..+.+.+||+++|+.... ...+..+....|+++|.. ++++... ..| ..+.|..+|+..
T Consensus 72 AD~t~kLWDv~tGk~la~--~k~~~~Vk~~~F~~~gn~----~l~~tD~----~mg------~~~~v~~fdi~~------ 129 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQLAT--WKTNSPVKRVDFSFGGNL----ILASTDK----QMG------YTCFVSVFDIRD------ 129 (327)
T ss_pred ccceeEEEEcCCCcEEEE--eecCCeeEEEeeccCCcE----EEEEehh----hcC------cceEEEEEEccC------
Confidence 347799999999998776 566667888999999998 8888732 222 334677777610
Q ss_pred hhhhhccCCCCCC-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeec
Q 005093 240 ELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 318 (715)
Q Consensus 240 ~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~ 318 (715)
.+....+.+ ...+..++..+....|+|-|+.|+..-.+. .|-.+|+.++....-+..
T Consensus 130 ----~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G-----------~is~~da~~g~~~v~s~~------- 187 (327)
T KOG0643|consen 130 ----DSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDG-----------SISIYDARTGKELVDSDE------- 187 (327)
T ss_pred ----ChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCC-----------cEEEEEcccCceeeechh-------
Confidence 000112333 556666677788899999999887554442 377788877543111100
Q ss_pred eecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEE
Q 005093 319 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIA 393 (715)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~ 393 (715)
.+...+.++++++|.. .+++++.+....|+ |..+-++.+.......+.-..++|--+.+++
T Consensus 188 -----------~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~--D~~tl~v~Kty~te~PvN~aaisP~~d~Vil 248 (327)
T KOG0643|consen 188 -----------EHSSKINDLQFSRDRT-YFITGSKDTTAKLV--DVRTLEVLKTYTTERPVNTAAISPLLDHVIL 248 (327)
T ss_pred -----------hhccccccccccCCcc-eEEecccCccceee--eccceeeEEEeeecccccceecccccceEEe
Confidence 1223577889999986 66666666556665 5445555444333333344566665555554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00025 Score=67.09 Aligned_cols=261 Identities=12% Similarity=0.089 Sum_probs=138.9
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-c--CCccEEEEecCcccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-S--QSQLEKEFHVPQTVH 90 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~ 90 (715)
....|.++|.-+.+.... .|++. ..+..-++||+|+.+|----+ +...+|.+. . .|.....-.+.. ..
T Consensus 75 qDGklIvWDs~TtnK~ha----ipl~s--~WVMtCA~sPSg~~VAcGGLd--N~Csiy~ls~~d~~g~~~v~r~l~g-Ht 145 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTNKVHA----IPLPS--SWVMTCAYSPSGNFVACGGLD--NKCSIYPLSTRDAEGNVRVSRELAG-HT 145 (343)
T ss_pred cCCeEEEEEcccccceeE----EecCc--eeEEEEEECCCCCeEEecCcC--ceeEEEecccccccccceeeeeecC-cc
Confidence 445556655655553222 35555 678999999999999865332 455677766 3 332222222222 11
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCcc-CceEEEEEc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR-QPSLFVINI 169 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~ 169 (715)
+.++..+|-+|+. |+-.+.+.+- ..|.+...+............-.+...|.-+.+++..+ ...-++||+
T Consensus 146 ------gylScC~f~dD~~-ilT~SGD~TC--alWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 146 ------GYLSCCRFLDDNH-ILTGSGDMTC--ALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred ------ceeEEEEEcCCCc-eEecCCCceE--EEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 2337788888775 4343322111 12222222222222222222223334442234443323 356889999
Q ss_pred cCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCC
Q 005093 170 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 249 (715)
Q Consensus 170 ~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (715)
..+.-.+-- .-.+..+..+.|-|+|.. ++.-+ ++ ...-.+|+ +.
T Consensus 217 R~~~c~qtF-~ghesDINsv~ffP~G~a----fatGS--DD-------------~tcRlyDl----------------Ra 260 (343)
T KOG0286|consen 217 RSGQCVQTF-EGHESDINSVRFFPSGDA----FATGS--DD-------------ATCRLYDL----------------RA 260 (343)
T ss_pred cCcceeEee-cccccccceEEEccCCCe----eeecC--CC-------------ceeEEEee----------------cC
Confidence 877655541 223345778999999987 55433 11 13344554 24
Q ss_pred CCCceecCCC--CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC-CcccceeeeeeceecCCCCC
Q 005093 250 DLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEGDC 326 (715)
Q Consensus 250 ~~~~~~lt~~--~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~~ 326 (715)
..+......+ ...+.++.||..|+ |+|....+ ....++|.-.++.. .|..
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d----------~~c~vWDtlk~e~vg~L~G---------------- 313 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDD----------FTCNVWDTLKGERVGVLAG---------------- 313 (343)
T ss_pred CcEEeeeccCcccCCceeEEEccccc-EEEeeecC----------CceeEeeccccceEEEeec----------------
Confidence 4444444433 22588999999998 55665443 23667774333321 1111
Q ss_pred ccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 327 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 327 ~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
++..+..+.-+|||. .+.+.+++...+||
T Consensus 314 ----HeNRvScl~~s~DG~-av~TgSWDs~lriW 342 (343)
T KOG0286|consen 314 ----HENRVSCLGVSPDGM-AVATGSWDSTLRIW 342 (343)
T ss_pred ----cCCeeEEEEECCCCc-EEEecchhHheeec
Confidence 222455667889996 56777777666666
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=6e-05 Score=76.42 Aligned_cols=84 Identities=10% Similarity=0.030 Sum_probs=50.8
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEec--Ccccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV--PQTVHGS 92 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 92 (715)
+.++|+.|+....++..+||+ -.|.|+.+....+...+ ++-.+|.+.+.....+++-. ..+..-
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~------------g~whP~~k~~FlT~s~D-gtlRiWdv~~~k~q~qVik~k~~~g~Rv- 318 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTC------------GCWHPDNKEEFLTCSYD-GTLRIWDVNNTKSQLQVIKTKPAGGKRV- 318 (641)
T ss_pred ccchhhhhhhccCCceeeeec------------cccccCcccceEEecCC-CcEEEEecCCchhheeEEeeccCCCccc-
Confidence 345555556555555554444 36888988876665554 66677777655555555432 222221
Q ss_pred ccCCCcccceeecCCCCeEEEEeec
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
......|+|||+.||-.+.+
T Consensus 319 -----~~tsC~~nrdg~~iAagc~D 338 (641)
T KOG0772|consen 319 -----PVTSCAWNRDGKLIAAGCLD 338 (641)
T ss_pred -----CceeeecCCCcchhhhcccC
Confidence 22688999999998775543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.04 E-value=8e-05 Score=73.44 Aligned_cols=236 Identities=15% Similarity=0.171 Sum_probs=137.1
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
+....|+|+|++|.-.+..+ -|.+|.+..-. +..-...| |..++.+.||++|.+++-.. ...-.++
T Consensus 99 V~~v~WtPeGRRLltgs~SG-----EFtLWNg~~fn--FEtilQaH-----Ds~Vr~m~ws~~g~wmiSgD--~gG~iKy 164 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSG-----EFTLWNGTSFN--FETILQAH-----DSPVRTMKWSHNGTWMISGD--KGGMIKY 164 (464)
T ss_pred eeeEEEcCCCceeEeecccc-----cEEEecCceee--HHHHhhhh-----cccceeEEEccCCCEEEEcC--CCceEEe
Confidence 67789999999998765543 48888651111 11101112 12348999999999876532 2222334
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce-EeecCCCCCCccceEEEecCCCCCccEEE
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLV 203 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~l~~~~~~~~~~~~~~spdg~~~~~~i~ 203 (715)
|...+..-.........-+..++|.|+...=+.-...+.|.+||..-.+. ++| ......+..+.|.|.-. ++
T Consensus 165 WqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL--~GHgwdVksvdWHP~kg-----Li 237 (464)
T KOG0284|consen 165 WQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL--RGHGWDVKSVDWHPTKG-----LI 237 (464)
T ss_pred cccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee--ccCCCCcceeccCCccc-----ee
Confidence 43332222112222223344555665432222222347899999876554 455 44455788899999644 66
Q ss_pred EEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 204 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
+++. .++-+-.+|. .+++ .-.|......+-...|+|+|++|+-.+.+.
T Consensus 238 asgs--------------kDnlVKlWDp-----------------rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 238 ASGS--------------KDNLVKLWDP-----------------RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred EEcc--------------CCceeEeecC-----------------CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 6652 2223445674 4444 445667777899999999999998777653
Q ss_pred CCCCCCccccceeEeeecCCCC-CCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 005093 283 SVDSGAHSATDSLHRIDWPTNG-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 361 (715)
Q Consensus 283 ~~~~g~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~ 361 (715)
.+-++|+.+-+ .+..-. +...+....|+|=...|+.+...++....|.
T Consensus 287 -----------~~kv~DiR~mkEl~~~r~--------------------Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 287 -----------SCKVFDIRTMKELFTYRG--------------------HKKDVTSLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred -----------eEEEEehhHhHHHHHhhc--------------------chhhheeeccccccccceeeccCCCceEEEe
Confidence 36677776322 111111 1113456779987777877776666556666
Q ss_pred EE
Q 005093 362 VN 363 (715)
Q Consensus 362 ~d 363 (715)
++
T Consensus 336 v~ 337 (464)
T KOG0284|consen 336 VG 337 (464)
T ss_pred cc
Confidence 55
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0003 Score=76.53 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=97.5
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEe-cCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
.+...++|-+|+++|+.++.. .+-++. .++..+..+. .... +..++++|.|+.||.++-+
T Consensus 98 p~r~~~v~g~g~~iaagsdD~----~vK~~~~~D~s~~~~lrgh~ap----------Vl~l~~~p~~~fLAvss~d---- 159 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDDT----AVKLLNLDDSSQEKVLRGHDAP----------VLQLSYDPKGNFLAVSSCD---- 159 (933)
T ss_pred cceEEEEecCCcEEEeecCce----eEEEEeccccchheeecccCCc----------eeeeeEcCCCCEEEEEecC----
Confidence 357789999999999876543 344444 3333333332 2222 3799999999999987432
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEe-ecCCCC------CCccceEEEecC
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPK------SLSVGQVVWAPL 194 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~------~~~~~~~~~spd 194 (715)
.+|++|+++++.... +++... ......++|+|+
T Consensus 160 ----------------------------------------G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk 199 (933)
T KOG1274|consen 160 ----------------------------------------GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK 199 (933)
T ss_pred ----------------------------------------ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCC
Confidence 669999998876432 221111 224568899999
Q ss_pred CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-ecCCC-C-ccccceeEcCC
Q 005093 195 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-I-SSAFFPRFSPD 271 (715)
Q Consensus 195 g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~-~-~~~~~~~~spd 271 (715)
|.. +++... ...|-.++. .+.+.. .|... . .......|||.
T Consensus 200 ~g~----la~~~~---------------d~~Vkvy~r-----------------~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 200 GGT----LAVPPV---------------DNTVKVYSR-----------------KGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred CCe----EEeecc---------------CCeEEEEcc-----------------CCceeheeecccccccceEEEEEcCC
Confidence 888 777652 124555553 333332 22211 1 12677999999
Q ss_pred CCeEEEEecCCCCCCCCccccceeEeeecCC
Q 005093 272 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 272 g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
|++||-...+. +|.++|+++
T Consensus 244 G~YiAAs~~~g-----------~I~vWnv~t 263 (933)
T KOG1274|consen 244 GKYIAASTLDG-----------QILVWNVDT 263 (933)
T ss_pred CcEEeeeccCC-----------cEEEEeccc
Confidence 99998655542 588888886
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.9e-05 Score=77.94 Aligned_cols=169 Identities=15% Similarity=0.183 Sum_probs=101.3
Q ss_pred CCCcEEEEEcCCCCCC-CCccchHHHHHHHhCC--cEEEEEcCCCC-CCCchhhhhcCCCCCCccchhhHHHHHHHHHH-
Q 005093 479 SCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVG--YSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVID- 553 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~-~~~~~~~~~~~la~~G--~~vi~~d~rG~-~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~- 553 (715)
.-.|+++++||++... ....+..+...|.-.| ..|..+|++.. +|- +. ....+-++.+.++...
T Consensus 174 ~~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG~----------nI-~h~ae~~vSf~r~kvle 242 (784)
T KOG3253|consen 174 PASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGGA----------NI-KHAAEYSVSFDRYKVLE 242 (784)
T ss_pred cCCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCCc----------ch-HHHHHHHHHHhhhhhhh
Confidence 3468899999987222 2222223334444344 44566776631 110 00 0113334444443322
Q ss_pred -cCCCCCceEEEEEeChhHHHHHHHHhhCCCc-eeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhh
Q 005093 554 -MGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 631 (715)
Q Consensus 554 -~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (715)
.+......|.|+|.|||+.++.+....+.+. +.++|++.=..+.. + +. + +..
T Consensus 243 i~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~v------d----------gp---r---gir---- 296 (784)
T KOG3253|consen 243 ITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTV------D----------GP---R---GIR---- 296 (784)
T ss_pred hhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCC------C----------cc---c---CCc----
Confidence 2345678899999999988887776655443 56666553222100 0 00 0 001
Q ss_pred HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCC
Q 005093 632 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 696 (715)
Q Consensus 632 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 696 (715)
-..+..++.|+|++.|.+|..|++...+++.++++. +++++++.+++|.+.-+
T Consensus 297 ---------DE~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsmaip 349 (784)
T KOG3253|consen 297 ---------DEALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMAIP 349 (784)
T ss_pred ---------chhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCccccCC
Confidence 012334678999999999999999998888888875 68899999999988643
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00038 Score=70.07 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=87.3
Q ss_pred cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCc--------CcccCC-ccCceEEEEE
Q 005093 98 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW--------GETYAG-KRQPSLFVIN 168 (715)
Q Consensus 98 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~-~~~~~l~~~~ 168 (715)
.+..+.|.|.|.-|+-.+++.+.+ .|.+...............+....|.|.. +..+.. .....|.+||
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~Tlk--iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd 438 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLK--IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD 438 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeE--eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence 447889999999888877766543 33333222222222222222222333321 222221 1236788999
Q ss_pred ccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCC
Q 005093 169 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 248 (715)
Q Consensus 169 ~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (715)
++.|.+.-.- ......+.+++|||||++ +++-. +..-|...+.
T Consensus 439 v~~gv~i~~f-~kH~~pVysvafS~~g~y----lAsGs---------------~dg~V~iws~----------------- 481 (524)
T KOG0273|consen 439 VESGVPIHTL-MKHQEPVYSVAFSPNGRY----LASGS---------------LDGCVHIWST----------------- 481 (524)
T ss_pred ccCCceeEee-ccCCCceEEEEecCCCcE----EEecC---------------CCCeeEeccc-----------------
Confidence 9988765431 345557889999999998 88754 2224555554
Q ss_pred CCCCceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 249 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 249 ~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
++++..+-....+.+..+.|+.+|.+|.-...+
T Consensus 482 ~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 482 KTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred cchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 555555544556668999999999988655444
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00031 Score=69.43 Aligned_cols=133 Identities=15% Similarity=0.230 Sum_probs=79.9
Q ss_pred ceEEEEEEEeecCCCCccccc-cCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCC--------------c
Q 005093 14 RKKFMLSTVISKENENSVTFQ-WAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS--------------Q 78 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~--------------~ 78 (715)
.+..||.+..+..+.....+. -+.+..+...+....|||+|..||-..+. + ...+|..+ +
T Consensus 36 ~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~--g---~v~lWk~~~~~~~~~d~e~~~~k 110 (434)
T KOG1009|consen 36 KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG--G---EVFLWKQGDVRIFDADTEADLNK 110 (434)
T ss_pred cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC--c---eEEEEEecCcCCccccchhhhCc
Confidence 456788755544433211111 12355555778999999999999855333 2 33455222 1
Q ss_pred cEEEEec-CccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccC
Q 005093 79 LEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA 157 (715)
Q Consensus 79 ~~~~~~~-~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 157 (715)
..+++.- -.+....+ ..+.|+||+..+.+.+-
T Consensus 111 e~w~v~k~lr~h~~di------ydL~Ws~d~~~l~s~s~----------------------------------------- 143 (434)
T KOG1009|consen 111 EKWVVKKVLRGHRDDI------YDLAWSPDSNFLVSGSV----------------------------------------- 143 (434)
T ss_pred cceEEEEEecccccch------hhhhccCCCceeeeeec-----------------------------------------
Confidence 1111110 11111222 58999999998887532
Q ss_pred CccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEe
Q 005093 158 GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 206 (715)
Q Consensus 158 ~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~ 206 (715)
.+.+++||+..|.+..+- ......+..++|.|-++. |+-.+
T Consensus 144 ---dns~~l~Dv~~G~l~~~~-~dh~~yvqgvawDpl~qy----v~s~s 184 (434)
T KOG1009|consen 144 ---DNSVRLWDVHAGQLLAIL-DDHEHYVQGVAWDPLNQY----VASKS 184 (434)
T ss_pred ---cceEEEEEeccceeEeec-cccccccceeecchhhhh----hhhhc
Confidence 277999999999887762 344557788999998887 76544
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00069 Score=69.89 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=91.4
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCcccc
Q 005093 185 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 264 (715)
Q Consensus 185 ~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 264 (715)
.--++.|.+-|.. |+..+..+- ++.+..| .+.+.||.++. ++.....--...+.+.
T Consensus 219 dkvqm~WN~~gt~----LLvLastdV-Dktn~SY--YGEq~Lyll~t-----------------~g~s~~V~L~k~GPVh 274 (566)
T KOG2315|consen 219 DKVQMKWNKLGTA----LLVLASTDV-DKTNASY--YGEQTLYLLAT-----------------QGESVSVPLLKEGPVH 274 (566)
T ss_pred ceeEEEeccCCce----EEEEEEEee-cCCCccc--cccceEEEEEe-----------------cCceEEEecCCCCCce
Confidence 3447889999998 776654332 2333332 35578999996 5333332223467889
Q ss_pred ceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCC
Q 005093 265 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 344 (715)
Q Consensus 265 ~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg 344 (715)
+..|||+|+.++.+-.- ... .+-++|+...-...+..+ .-..+-|+|.|
T Consensus 275 dv~W~~s~~EF~VvyGf-------MPA--kvtifnlr~~~v~df~eg----------------------pRN~~~fnp~g 323 (566)
T KOG2315|consen 275 DVTWSPSGREFAVVYGF-------MPA--KVTIFNLRGKPVFDFPEG----------------------PRNTAFFNPHG 323 (566)
T ss_pred EEEECCCCCEEEEEEec-------ccc--eEEEEcCCCCEeEeCCCC----------------------CccceEECCCC
Confidence 99999999988765522 122 344556655322111111 12355699999
Q ss_pred CEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeEEEeecCCEEEEEEeC
Q 005093 345 CTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSS 397 (715)
Q Consensus 345 ~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~~~~~l~~~~~~ 397 (715)
+.|++..-..-...+-.+|..+ .+.|.... .+-+...|+|||.+++....+
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred CEEEEeecCCCCCceEEEeccc--hhhccccccCCceEEEEcCCCcEEEEEecc
Confidence 9888776544333455557655 22332221 233567899999988876533
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00011 Score=71.51 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=87.5
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
.+...+|.+||..|+-.+-.+ .-+.+| +.|+..++... +. +.++.+.|||||.+|+-.+-+.
T Consensus 197 pVtsmqwn~dgt~l~tAS~gs----ssi~iWdpdtg~~~pL~~~--gl-------gg~slLkwSPdgd~lfaAt~da--- 260 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASFGS----SSIMIWDPDTGQKIPLIPK--GL-------GGFSLLKWSPDGDVLFAATCDA--- 260 (445)
T ss_pred eeeEEEEcCCCCEEeecccCc----ceEEEEcCCCCCccccccc--CC-------CceeeEEEcCCCCEEEEecccc---
Confidence 378889999999887544322 335677 56666666532 22 2337899999999885543221
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEE-EEEccCCceEeecCCCCCCccceEEEecCCCCCcc
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLF-VININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
...|| .-.-.+.+...+ .++ .+....|||+|+.
T Consensus 261 ---------------------------------------vfrlw~e~q~wt~erw~l--gsg--rvqtacWspcGsf--- 294 (445)
T KOG2139|consen 261 ---------------------------------------VFRLWQENQSWTKERWIL--GSG--RVQTACWSPCGSF--- 294 (445)
T ss_pred ---------------------------------------eeeeehhcccceecceec--cCC--ceeeeeecCCCCE---
Confidence 12222 111123344444 233 6778899999999
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhh-hhcc--CCCCCCceecCCC---CccccceeEcCCCCe
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE-LKES--SSEDLPVVNLTES---ISSAFFPRFSPDGKF 274 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~lt~~---~~~~~~~~~spdg~~ 274 (715)
|+|+.... ..||.+.+++++......- .++. +.+-.++...++. .+.....+|.|-|.+
T Consensus 295 -LLf~~sgs--------------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey 359 (445)
T KOG2139|consen 295 -LLFACSGS--------------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY 359 (445)
T ss_pred -EEEEEcCC--------------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE
Confidence 99986322 2455555432211111000 0000 0111222222321 335677999999999
Q ss_pred EEEEecC
Q 005093 275 LVFLSAK 281 (715)
Q Consensus 275 l~~~~~~ 281 (715)
||..-..
T Consensus 360 Lav~fKg 366 (445)
T KOG2139|consen 360 LAVIFKG 366 (445)
T ss_pred EEEEEcC
Confidence 9866544
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.8e-05 Score=72.59 Aligned_cols=104 Identities=17% Similarity=0.300 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHH--------HhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHH
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFL--------SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI 552 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~l--------a~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~ 552 (715)
...|||+||..++ ...+......+ ....+.++..||..... . ..+..-....+-+.++++.+.
T Consensus 4 g~pVlFIhG~~Gs--~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s---~----~~g~~l~~q~~~~~~~i~~i~ 74 (225)
T PF07819_consen 4 GIPVLFIHGNAGS--YKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELS---A----FHGRTLQRQAEFLAEAIKYIL 74 (225)
T ss_pred CCEEEEECcCCCC--HhHHHHHHHHHhhhhhhccCccceeEEEeccCcccc---c----cccccHHHHHHHHHHHHHHHH
Confidence 3569999995443 22333332222 23357888999865211 1 111111122445556666666
Q ss_pred HcC---CCCCceEEEEEeChhHHHHHHHHhhCC---CceeEEEecCC
Q 005093 553 DMG---LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNP 593 (715)
Q Consensus 553 ~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~ 593 (715)
+.. ...+++|.|+||||||.++..++...+ +.++.+|.++.
T Consensus 75 ~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~t 121 (225)
T PF07819_consen 75 ELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGT 121 (225)
T ss_pred HhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcC
Confidence 543 356789999999999999888776543 35777776554
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0002 Score=62.24 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcch-hhhhccCCCCCCceeeeccCCCC
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LALMVGTTDIPDWCYVESYGSKG 619 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 619 (715)
...+++.++.++++. .| ..++|+|.|.||+.|.+++.++. +++++ ++|.+. ...+.+..+.+.-
T Consensus 42 p~~a~~ele~~i~~~-~~-~~p~ivGssLGGY~At~l~~~~G--irav~-~NPav~P~e~l~gylg~~en---------- 106 (191)
T COG3150 42 PQQALKELEKAVQEL-GD-ESPLIVGSSLGGYYATWLGFLCG--IRAVV-FNPAVRPYELLTGYLGRPEN---------- 106 (191)
T ss_pred HHHHHHHHHHHHHHc-CC-CCceEEeecchHHHHHHHHHHhC--Chhhh-cCCCcCchhhhhhhcCCCCC----------
Confidence 445555566555553 12 34899999999999999998864 44443 445332 1222221111110
Q ss_pred CCCCCCCCChhhHHHHHhcCchhhccCCCCc-EEEEee-CCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCC
Q 005093 620 KDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFLLG-AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 697 (715)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~Lii~G-~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 697 (715)
.+.+....-+....... ....+..++.| .|++.. +.|++....++.+.+.. +...+.+|+.|.|...+
T Consensus 107 --~ytg~~y~le~~hI~~l-~~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~-------~~~~V~dgg~H~F~~f~ 176 (191)
T COG3150 107 --PYTGQEYVLESRHIATL-CVLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHP-------CYEIVWDGGDHKFKGFS 176 (191)
T ss_pred --CCCcceEEeehhhHHHH-HHhhccccCCCcEEEeecccccHHHHHHHHHHHhhh-------hhheeecCCCccccchH
Confidence 00000000000111111 11233444444 444444 44988876666655554 34567888999886543
Q ss_pred chHHHHHHHHHHHH
Q 005093 698 SDFESFLNIGLWFK 711 (715)
Q Consensus 698 ~~~~~~~~i~~wl~ 711 (715)
..+.+|+.|..
T Consensus 177 ---~~l~~i~aF~g 187 (191)
T COG3150 177 ---RHLQRIKAFKG 187 (191)
T ss_pred ---HhHHHHHHHhc
Confidence 45777888764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00068 Score=73.91 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=91.7
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc-eEeec
Q 005093 100 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVK 178 (715)
Q Consensus 100 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~l~ 178 (715)
..+.++-+|++||+.+++ ..|-+++.++.. .+.+
T Consensus 100 r~~~v~g~g~~iaagsdD--------------------------------------------~~vK~~~~~D~s~~~~l- 134 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDD--------------------------------------------TAVKLLNLDDSSQEKVL- 134 (933)
T ss_pred eEEEEecCCcEEEeecCc--------------------------------------------eeEEEEeccccchheee-
Confidence 688999999999997543 446666665543 3333
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecC
Q 005093 179 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT 257 (715)
Q Consensus 179 ~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt 257 (715)
...+.++.++.|.|.|+. |+.+. -++.++.+++ +++.. ..++
T Consensus 135 -rgh~apVl~l~~~p~~~f----LAvss---------------~dG~v~iw~~-----------------~~~~~~~tl~ 177 (933)
T KOG1274|consen 135 -RGHDAPVLQLSYDPKGNF----LAVSS---------------CDGKVQIWDL-----------------QDGILSKTLT 177 (933)
T ss_pred -cccCCceeeeeEcCCCCE----EEEEe---------------cCceEEEEEc-----------------ccchhhhhcc
Confidence 233456778999999997 77665 3346778886 44433 2222
Q ss_pred CC--------CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccc
Q 005093 258 ES--------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 329 (715)
Q Consensus 258 ~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g 329 (715)
.- ...+..|+|+|+|.++++...+.. +-+++..+.+..-..... .
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-----------Vkvy~r~~we~~f~Lr~~-~--------------- 230 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-----------VKVYSRKGWELQFKLRDK-L--------------- 230 (933)
T ss_pred cCCccccccccceeeeeeecCCCCeEEeeccCCe-----------EEEEccCCceeheeeccc-c---------------
Confidence 21 123677999999888888877643 444554443321100000 0
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 005093 330 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 366 (715)
Q Consensus 330 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~t 366 (715)
.......+.|+|.|++|..++. .+ .|..||.++
T Consensus 231 -~ss~~~~~~wsPnG~YiAAs~~-~g--~I~vWnv~t 263 (933)
T KOG1274|consen 231 -SSSKFSDLQWSPNGKYIAASTL-DG--QILVWNVDT 263 (933)
T ss_pred -cccceEEEEEcCCCcEEeeecc-CC--cEEEEeccc
Confidence 0001345679999997766554 33 444456554
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00061 Score=71.37 Aligned_cols=232 Identities=16% Similarity=0.169 Sum_probs=130.8
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
..+....|||+|+.||.....+ .+.+|+..+...+......... .+..++|+. .++-...
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h~~------rvg~laW~~---~~lssGs------ 277 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSHAS------RVGSLAWNS---SVLSSGS------ 277 (484)
T ss_pred CceEEEEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCcCc------eeEEEeccC---ceEEEec------
Confidence 6689999999999999876553 4455532222222222111111 227888982 2222211
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 202 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i 202 (715)
+...|..+|+...+...-+-......+....|++|++. +
T Consensus 278 -------------------------------------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~----l 316 (484)
T KOG0305|consen 278 -------------------------------------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ----L 316 (484)
T ss_pred -------------------------------------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe----e
Confidence 22556677765443211100222335668899999998 7
Q ss_pred EEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 203 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 203 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
+--+ .++.+++.|. ........++++...+...+|+|=-+-|+-+...
T Consensus 317 ASGg---------------nDN~~~Iwd~----------------~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG- 364 (484)
T KOG0305|consen 317 ASGG---------------NDNVVFIWDG----------------LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG- 364 (484)
T ss_pred ccCC---------------CccceEeccC----------------CCccccEEEeccceeeeEeeeCCCccCceEEcCC-
Confidence 6544 2235666664 1455667888888889999999966655444332
Q ss_pred CCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee-CCeeEEEE
Q 005093 283 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIIS 361 (715)
Q Consensus 283 ~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~-~~~~~l~~ 361 (715)
.....|..+|..++....... ....+.++.|++..+.|+.+... .....||.
T Consensus 365 -------s~D~~i~fwn~~~g~~i~~vd--------------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~ 417 (484)
T KOG0305|consen 365 -------SADRCIKFWNTNTGARIDSVD--------------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWK 417 (484)
T ss_pred -------CcccEEEEEEcCCCcEecccc--------------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence 334568888877655421110 01145688899999888765442 23345666
Q ss_pred EECCCCcEEEecCCCCCceeEEEeecCCEEEEEE
Q 005093 362 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 362 ~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
+.. -..+..+.....-+-...++|||..++..+
T Consensus 418 ~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 418 YPS-MKLVAELLGHTSRVLYLALSPDGETIVTGA 450 (484)
T ss_pred ccc-cceeeeecCCcceeEEEEECCCCCEEEEec
Confidence 653 122333333333233346677766665444
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.3e-05 Score=82.24 Aligned_cols=112 Identities=21% Similarity=0.193 Sum_probs=68.8
Q ss_pred CcEEEEEcCCCCCCCCc--cchHHHHHHHhCCcEEEEEcCCCCCCCchhhh--hc----CCCCCCccchhhHHHHHHHHH
Q 005093 481 DPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL--QS----LPGKVGSQDVNDVLTAIDHVI 552 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~--~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~--~~----~~~~~~~~~~~d~~~~i~~l~ 552 (715)
.|++|++-| -...... ..........+.|-.|+++.+|- ||.+.. .. +..-...+.++|++..++++.
T Consensus 29 gpifl~~gg-E~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 29 GPIFLYIGG-EGPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 888888855 2221111 11123344467899999999998 666542 11 111122345789999999988
Q ss_pred HcC-CCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcch
Q 005093 553 DMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 596 (715)
Q Consensus 553 ~~~-~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~ 596 (715)
.+. ..+..+++++|.|+||.+|+++-.++|+++.++++.|+++.
T Consensus 105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 653 34556999999999999999999999999999998887653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0013 Score=63.07 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=60.1
Q ss_pred CceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeee--c
Q 005093 223 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID--W 300 (715)
Q Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~--~ 300 (715)
.+.|.++++ .++....+..........+.||||+.|+...-..+ +.++. .
T Consensus 208 dt~i~lw~l-----------------kGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD-----------VkVwE~~f 259 (420)
T KOG2096|consen 208 DTKICLWDL-----------------KGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD-----------VKVWEPIF 259 (420)
T ss_pred CCcEEEEec-----------------CCceeeeeccccccccceeeCCCCcEEEEecCCCC-----------ceEEEEEe
Confidence 347889997 65555566555556788899999999987665532 34433 2
Q ss_pred CCCCC-CCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 005093 301 PTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 365 (715)
Q Consensus 301 ~~~~~-~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~ 365 (715)
...+. +.+. .+ ..+.| +...+..++|+++.+++ ++.+.+|..+||-.|+.
T Consensus 260 ~kdG~fqev~-------rv------f~LkG-H~saV~~~aFsn~S~r~-vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 260 TKDGTFQEVK-------RV------FSLKG-HQSAVLAAAFSNSSTRA-VTVSKDGKWRIWDTDVR 310 (420)
T ss_pred ccCcchhhhh-------hh------heecc-chhheeeeeeCCCccee-EEEecCCcEEEeeccce
Confidence 22222 1111 00 01111 22245677899998765 55666788888877763
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0027 Score=65.65 Aligned_cols=204 Identities=16% Similarity=0.260 Sum_probs=115.6
Q ss_pred ccceEEeeCCCC--ceEEEEecCCCCCCeEEEEe---cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 43 TGASAVVPSPSG--SKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 43 ~~~~~~~~Spdg--~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
.++....+||-+ ..||+-.-..++......++ ..+....+-.-+.-..+. -.+.|.+-|+-|+.++..
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadk-------vqm~WN~~gt~LLvLast 238 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADK-------VQMKWNKLGTALLVLAST 238 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccce-------eEEEeccCCceEEEEEEE
Confidence 456777777764 45554333333555555555 223322221111111111 278899999999998754
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
..... .-.|. |+ ..||.++.++.. ..+. .....++.++.|+|+|+.
T Consensus 239 dVDkt----------------------n~SYY---GE-------q~Lyll~t~g~s-~~V~-L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 239 DVDKT----------------------NASYY---GE-------QTLYLLATQGES-VSVP-LLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred eecCC----------------------Ccccc---cc-------ceEEEEEecCce-EEEe-cCCCCCceEEEECCCCCE
Confidence 32211 00011 33 889999998443 3332 456678899999999998
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEE
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~ 277 (715)
++.+-. + -+..+-.+|+ .+..+-.+-+ +.-....|||-|+.|++
T Consensus 285 ----F~VvyG--------f-----MPAkvtifnl-----------------r~~~v~df~e--gpRN~~~fnp~g~ii~l 328 (566)
T KOG2315|consen 285 ----FAVVYG--------F-----MPAKVTIFNL-----------------RGKPVFDFPE--GPRNTAFFNPHGNIILL 328 (566)
T ss_pred ----EEEEEe--------c-----ccceEEEEcC-----------------CCCEeEeCCC--CCccceEECCCCCEEEE
Confidence 665431 1 1124666675 4444433333 34456889999999998
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEee
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 352 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~ 352 (715)
+.-.+ -..++-++|..+.+ .++.... ....-+.|+|||++++..+.
T Consensus 329 AGFGN--------L~G~mEvwDv~n~K--~i~~~~a-------------------~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 329 AGFGN--------LPGDMEVWDVPNRK--LIAKFKA-------------------ANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred eecCC--------CCCceEEEeccchh--hcccccc-------------------CCceEEEEcCCCcEEEEEec
Confidence 88664 12357778877632 2221110 01234569999997766554
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00043 Score=69.99 Aligned_cols=207 Identities=12% Similarity=0.128 Sum_probs=120.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHHhCCcEEEEEcCCCCCCCc-hhhh---------
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFG-EEAL--------- 529 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-~~~~~~~~la~~G~~vi~~d~rG~~~~g-~~~~--------- 529 (715)
++.++- .+++|.. ......+||++||-+....+. ....+...|.++|+.++.+..+.-.... ....
T Consensus 70 ~~~~fl-aL~~~~~--~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a 146 (310)
T PF12048_consen 70 GEERFL-ALWRPAN--SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSA 146 (310)
T ss_pred CCEEEE-EEEeccc--CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCC
Confidence 344444 3666753 566788999999965554433 3445667889999999998876511000 0000
Q ss_pred --hcCCCC-----------------CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC-ceeEEE
Q 005093 530 --QSLPGK-----------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAA 589 (715)
Q Consensus 530 --~~~~~~-----------------~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v 589 (715)
...... .......-+.+++.++.+++ ..+|+|+||+.|+++++.++...+. .+.++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV 223 (310)
T PF12048_consen 147 GDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAARYLAEKPPPMPDALV 223 (310)
T ss_pred CCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHHHHhcCCCcccCeEE
Confidence 000000 00011223445666666664 3569999999999999999887654 478888
Q ss_pred ecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHH
Q 005093 590 ARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 669 (715)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~ 669 (715)
++++.... ... .......+.+++.|+|=|++.....+ .....
T Consensus 224 ~I~a~~p~-------------------------------~~~-----n~~l~~~la~l~iPvLDi~~~~~~~~--~~~a~ 265 (310)
T PF12048_consen 224 LINAYWPQ-------------------------------PDR-----NPALAEQLAQLKIPVLDIYSADNPAS--QQTAK 265 (310)
T ss_pred EEeCCCCc-------------------------------chh-----hhhHHHHhhccCCCEEEEecCCChHH--HHHHH
Confidence 88774210 000 01112345678899999998773222 22222
Q ss_pred HHHHH-HHc-CCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 670 YARAL-REK-GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 670 ~~~~l-~~~-g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
..+.+ +++ ....+-+.+.+..|.....+ ....++|-.|++++
T Consensus 266 ~R~~~a~r~~~~~YrQ~~L~~~~~~~~~~~--~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 266 QRKQAAKRNKKPDYRQIQLPGLPDNPSGWQ--EQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHHHhccCCCceeEecCCCCCChhhHH--HHHHHHHHHHHHhh
Confidence 22222 222 23556666777666553332 23888999999875
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00018 Score=71.46 Aligned_cols=210 Identities=16% Similarity=0.127 Sum_probs=114.3
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEec-CCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
++.....++++||+.||-.... ..+.+|+ -.-...+ .. ...|+.| ..+.|||||+.|+++..
T Consensus 144 ~g~~k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~~t~l-~e-~~~~~eV------~DL~FS~dgk~lasig~---- 206 (398)
T KOG0771|consen 144 FGQQKVVAFNGDGSKLATGGTD-----GTLRVWEWPSMLTIL-EE-IAHHAEV------KDLDFSPDGKFLASIGA---- 206 (398)
T ss_pred cCcceEEEEcCCCCEeeecccc-----ceEEEEecCcchhhh-hh-HhhcCcc------ccceeCCCCcEEEEecC----
Confidence 3556788999999999865443 2344442 1111111 11 1112223 89999999999999732
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE-eecCCCCCCccceEEEecCCCCCc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
....||+.++|... ..++...+......+|+-|+.. .
T Consensus 207 -----------------------------------------d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~ 244 (398)
T KOG0771|consen 207 -----------------------------------------DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQ-E 244 (398)
T ss_pred -----------------------------------------CceEEEEeccCchhhhcCCcccchhhhhceecccCCC-c
Confidence 46789999888433 3322344556778899988843 1
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEe
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~ 279 (715)
.+.++......+. . +.+++...+- .+-...++.......+.....|+||+.++..+
T Consensus 245 ~l~laa~~~~~~~---v-----~~~~~~~w~~----------------~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 245 TLRLAASQFPGGG---V-----RLCDISLWSG----------------SNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred eEEEEEecCCCCc---e-----eEEEeeeecc----------------ccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 1133333222110 0 1112222220 02224455555566789999999999999888
Q ss_pred cCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 005093 280 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359 (715)
Q Consensus 280 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l 359 (715)
+.. ++-+++...=+...+. |..|...+..+.|+||.+++.= .+.+....+
T Consensus 301 ~dG-----------sVai~~~~~lq~~~~v------------------k~aH~~~VT~ltF~Pdsr~~~s-vSs~~~~~v 350 (398)
T KOG0771|consen 301 MDG-----------SVAIYDAKSLQRLQYV------------------KEAHLGFVTGLTFSPDSRYLAS-VSSDNEAAV 350 (398)
T ss_pred cCC-----------cEEEEEeceeeeeEee------------------hhhheeeeeeEEEcCCcCcccc-cccCCceeE
Confidence 753 3555554332211111 1122234567778888775433 333344456
Q ss_pred EEEEC
Q 005093 360 ISVNV 364 (715)
Q Consensus 360 ~~~d~ 364 (715)
..+-.
T Consensus 351 ~~l~v 355 (398)
T KOG0771|consen 351 TKLAV 355 (398)
T ss_pred EEEee
Confidence 55554
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00065 Score=63.47 Aligned_cols=211 Identities=17% Similarity=0.171 Sum_probs=112.6
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCC-----cEEEEEcCCCCCCCc----hhhhhcCC-----C--CCCccchhh
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG-----YSLLIVNYRGSLGFG----EEALQSLP-----G--KVGSQDVND 543 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G-----~~vi~~d~rG~~~~g----~~~~~~~~-----~--~~~~~~~~d 543 (715)
..| .||+||.++. ......++..|...+ -.++.+|--|+-..- .......- . ........=
T Consensus 45 ~iP-TIfIhGsgG~--asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIP-TIFIHGSGGT--ASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccc-eEEEecCCCC--hhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 445 5789995554 335566676665555 356666665532211 11111000 0 000111223
Q ss_pred HHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC-----ceeEEEecCCcchhhhhccCCCCCCceeeeccCCC
Q 005093 544 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 618 (715)
Q Consensus 544 ~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (715)
+..++.+|.+++. -.++-++||||||.....++..+.+ .+...|++++.++.....+.....+ +...
T Consensus 122 lk~~msyL~~~Y~--i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~------v~~~ 193 (288)
T COG4814 122 LKKAMSYLQKHYN--IPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTD------VLKD 193 (288)
T ss_pred HHHHHHHHHHhcC--CceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchhe------eecc
Confidence 4567788888875 4689999999999998888876521 3556666666555211111111100 0000
Q ss_pred CCCCCCCCCChhhHHHHHhcCchhhccCC--CCcEEEEeeCCC------CcCCchHHHHHHHHHHHcCCcEEEEEeCC--
Q 005093 619 GKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQD------LRVPVSNGLQYARALREKGVETKVIVFPN-- 688 (715)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~P~Lii~G~~D------~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-- 688 (715)
... ....+. .+.+.. ...++ ..-+|+|.|+-| -.||...+...+..+...++...-.+++|
T Consensus 194 ~~~-~~~t~y---~~y~~~-----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~ 264 (288)
T COG4814 194 GPG-LIKTPY---YDYIAK-----NYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKD 264 (288)
T ss_pred Ccc-ccCcHH---HHHHHh-----cceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCc
Confidence 000 011111 111111 11112 246899999865 45888888888888887777766656666
Q ss_pred CCccCCCCCchHHHHHHHHHHHHH
Q 005093 689 DVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 689 ~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+.|.-.. ++. .+.+.+..||-+
T Consensus 265 a~Hs~lh-en~-~v~~yv~~FLw~ 286 (288)
T COG4814 265 ARHSKLH-ENP-TVAKYVKNFLWE 286 (288)
T ss_pred chhhccC-CCh-hHHHHHHHHhhc
Confidence 4575443 332 566777777743
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.059 Score=64.22 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=69.2
Q ss_pred ccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceee-eeeceecC-CCCCccccccCCCCCCcc
Q 005093 263 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD-VIPVVQCA-EGDCFPGLYSSSILSNPW 340 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~-~~~~~~~~-~~~~~~g~~~~~~~~~~~ 340 (715)
....+++|||++|+++...+ .+|.++|+.+++...+..+... ...+.... .++.........+..+++
T Consensus 742 P~GIavspdG~~LYVADs~n----------~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav 811 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSES----------SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC 811 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCC----------CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeE
Confidence 45688999999887666442 4689999877654222110000 00000000 000000000113456778
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--------------CceeEEEeecCCEEEEEEeCCCCCCeEEE
Q 005093 341 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--------------NFSWSLLTLDGDNIIAVSSSPVDVPQVKY 406 (715)
Q Consensus 341 ~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--------------~~~~~~~s~~~~~l~~~~~~~~~p~~l~~ 406 (715)
++||+ +|++. .+..+|..+|++++.+..+..... ......++++|+ ++++ .+. ...|.+
T Consensus 812 d~dG~-LYVAD--s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVa-Dt~--Nn~Irv 884 (1057)
T PLN02919 812 AKDGQ-IYVAD--SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVA-DTN--NSLIRY 884 (1057)
T ss_pred eCCCc-EEEEE--CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEE-ECC--CCEEEE
Confidence 89987 55543 345678889998888876653210 112235566664 4443 322 225777
Q ss_pred EeecccC
Q 005093 407 GYFVDKA 413 (715)
Q Consensus 407 ~~~~~~~ 413 (715)
+++.+++
T Consensus 885 id~~~~~ 891 (1057)
T PLN02919 885 LDLNKGE 891 (1057)
T ss_pred EECCCCc
Confidence 7776553
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0011 Score=65.36 Aligned_cols=176 Identities=16% Similarity=0.092 Sum_probs=96.9
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC
Q 005093 100 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 179 (715)
Q Consensus 100 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~ 179 (715)
..+++||||+.+|++.... ....|++....+.....+
T Consensus 27 ~s~AvS~dg~~~A~v~~~~-----------------------------------------~~~~L~~~~~~~~~~~~~-- 63 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGD-----------------------------------------GGRSLYVGPAGGPVRPVL-- 63 (253)
T ss_pred cceEECCCCCeEEEEEEcC-----------------------------------------CCCEEEEEcCCCcceeec--
Confidence 7899999999999987221 237789988754444333
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCC
Q 005093 180 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 259 (715)
Q Consensus 180 ~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 259 (715)
.. .....++|+++|.- .++.. ... ...++..+.. .......+...
T Consensus 64 -~g-~~l~~PS~d~~g~~----W~v~~-~~~------------~~~~~~~~~~----------------g~~~~~~v~~~ 108 (253)
T PF10647_consen 64 -TG-GSLTRPSWDPDGWV----WTVDD-GSG------------GVRVVRDSAS----------------GTGEPVEVDWP 108 (253)
T ss_pred -cC-CccccccccCCCCE----EEEEc-CCC------------ceEEEEecCC----------------CcceeEEeccc
Confidence 22 25778899999764 33332 111 0122221110 11222223222
Q ss_pred Cc--cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeec--CCCC-CCCcccceeeeeeceecCCCCCccccccCC
Q 005093 260 IS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW--PTNG-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 334 (715)
Q Consensus 260 ~~--~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~-~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~ 334 (715)
.. .+..+++||||.++++...... ..+|++.-+ +..+ ...++... .+ .... ...
T Consensus 109 ~~~~~I~~l~vSpDG~RvA~v~~~~~--------~~~v~va~V~r~~~g~~~~l~~~~-~~---~~~~---------~~~ 167 (253)
T PF10647_consen 109 GLRGRITALRVSPDGTRVAVVVEDGG--------GGRVYVAGVVRDGDGVPRRLTGPR-RV---APPL---------LSD 167 (253)
T ss_pred ccCCceEEEEECCCCcEEEEEEecCC--------CCeEEEEEEEeCCCCCcceeccce-Ee---cccc---------cCc
Confidence 11 6888999999999999997742 245776554 3333 22332211 11 0000 013
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC
Q 005093 335 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 375 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~ 375 (715)
...+.|.++++.+++.......... .+....+..+.+...
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l~~~ 207 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPLPSV 207 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCCceeE-EEEccCCcccccCCC
Confidence 4578899998755554443332233 466667777777433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0016 Score=76.07 Aligned_cols=231 Identities=12% Similarity=0.078 Sum_probs=117.6
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCC-CCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCcccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVH 90 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 90 (715)
....|.++|+.+... ..+ +..+.+.+...+|+| ||..|+-.... ....+| ..+...........
T Consensus 553 ~Dg~v~lWd~~~~~~-~~~-----~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~~~~~~~~~~~-- 619 (793)
T PLN00181 553 FEGVVQVWDVARSQL-VTE-----MKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGVSIGTIKTKAN-- 619 (793)
T ss_pred CCCeEEEEECCCCeE-EEE-----ecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCcEEEEEecCCC--
Confidence 344566666654321 111 222336688999997 77777655333 245556 33333222221111
Q ss_pred ccccCCCcccceeec-CCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEc
Q 005093 91 GSVYADGWFEGISWN-SDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 169 (715)
Q Consensus 91 ~~~~~~~~~~~~~wS-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 169 (715)
+..+.|+ ++|+.|+..+. ...|++||+
T Consensus 620 --------v~~v~~~~~~g~~latgs~--------------------------------------------dg~I~iwD~ 647 (793)
T PLN00181 620 --------ICCVQFPSESGRSLAFGSA--------------------------------------------DHKVYYYDL 647 (793)
T ss_pred --------eEEEEEeCCCCCEEEEEeC--------------------------------------------CCeEEEEEC
Confidence 2577884 57888777532 267999999
Q ss_pred cCCce--EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccC
Q 005093 170 NSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 247 (715)
Q Consensus 170 ~~g~~--~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 247 (715)
.++.. ..+ ......+..+.|+ |+.. |+..+ .+..|.++|+.. ....
T Consensus 648 ~~~~~~~~~~--~~h~~~V~~v~f~-~~~~----lvs~s---------------~D~~ikiWd~~~----------~~~~ 695 (793)
T PLN00181 648 RNPKLPLCTM--IGHSKTVSYVRFV-DSST----LVSSS---------------TDNTLKLWDLSM----------SISG 695 (793)
T ss_pred CCCCccceEe--cCCCCCEEEEEEe-CCCE----EEEEE---------------CCCEEEEEeCCC----------Cccc
Confidence 76542 233 2223356678887 6665 55544 122455666510 0000
Q ss_pred CCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cc-cceeeeeeceecCCCC
Q 005093 248 SEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SL-EKIVDVIPVVQCAEGD 325 (715)
Q Consensus 248 ~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt-~~~~~~~~~~~~~~~~ 325 (715)
........+...........|+|+|++|+..+.+. .+++++........ .. ...+.+..+. ...
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~-----------~v~iw~~~~~~~~~s~~~~~~~~~~~~~-~~~-- 761 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN-----------EVFVYHKAFPMPVLSYKFKTIDPVSGLE-VDD-- 761 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC-----------EEEEEECCCCCceEEEecccCCcccccc-cCC--
Confidence 01123345555555567788999999887766553 46777754432110 00 0000000000 000
Q ss_pred CccccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 005093 326 CFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 361 (715)
Q Consensus 326 ~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~ 361 (715)
....+..++|++++..+ ++....+...+|.
T Consensus 762 -----~~~~V~~v~ws~~~~~l-va~~~dG~I~i~~ 791 (793)
T PLN00181 762 -----ASQFISSVCWRGQSSTL-VAANSTGNIKILE 791 (793)
T ss_pred -----CCcEEEEEEEcCCCCeE-EEecCCCcEEEEe
Confidence 00124577899999854 5555566555553
|
|
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00044 Score=66.06 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=86.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--c--cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 464 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--S--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 464 ~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~--~--~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
.++..++-- +++++|+||-.|.-+.+... . .....++.+.++ |.|+-+|.+|...- ...++..+...
T Consensus 33 ~v~V~V~Gd----~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~g----Ap~~p~~y~yP 103 (326)
T KOG2931|consen 33 VVHVTVYGD----PKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDG----APSFPEGYPYP 103 (326)
T ss_pred cEEEEEecC----CCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccC----CccCCCCCCCC
Confidence 366555531 33478889999984433211 1 112344556666 99999999984322 22345555556
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcch
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 596 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~ 596 (715)
.++++.+.+-.+.+.. .-+.|.-+|--+|+++..++|..||+++-++|++++...
T Consensus 104 smd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~ 158 (326)
T KOG2931|consen 104 SMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPC 158 (326)
T ss_pred CHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCC
Confidence 6888888888888774 457799999999999999999999999999999987553
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00082 Score=62.89 Aligned_cols=244 Identities=10% Similarity=0.001 Sum_probs=132.6
Q ss_pred ccccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCC-CeEEEEe-c-------CCc
Q 005093 8 NLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENES-PIQFELW-S-------QSQ 78 (715)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~-~~~~~~~-~-------~~~ 78 (715)
.+.+...+..+.++|+.++.. |..-+++ ..+...-||++|..+++..+..-+. .-+..+. . ..+
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~----la~~k~~---~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQ----LATWKTN---SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred eeeeccccceeEEEEcCCCcE----EEEeecC---CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 345556667777777877653 2222222 2367788999999999887653222 2233333 1 112
Q ss_pred cEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCC
Q 005093 79 LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAG 158 (715)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 158 (715)
+...+..+... +...-|+|-|+.|.+.-
T Consensus 139 p~~kI~t~~sk---------it~a~Wg~l~~~ii~Gh------------------------------------------- 166 (327)
T KOG0643|consen 139 PYLKIPTPDSK---------ITSALWGPLGETIIAGH------------------------------------------- 166 (327)
T ss_pred ceEEecCCccc---------eeeeeecccCCEEEEec-------------------------------------------
Confidence 22222222221 26788999999998742
Q ss_pred ccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh
Q 005093 159 KRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238 (715)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 238 (715)
....|-.||+.+|+...-.....+..+.++++|||... ++..+ .+..--++|.
T Consensus 167 -e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~----FiT~s---------------~Dttakl~D~------- 219 (327)
T KOG0643|consen 167 -EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY----FITGS---------------KDTTAKLVDV------- 219 (327)
T ss_pred -CCCcEEEEEcccCceeeechhhhccccccccccCCcce----EEecc---------------cCccceeeec-------
Confidence 23568899999886543311223346889999999886 55443 1123334443
Q ss_pred hhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeec
Q 005093 239 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 318 (715)
Q Consensus 239 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~ 318 (715)
.+-+...-...+......++||--..++.....+. .++-.-+...++. . .....+
T Consensus 220 ----------~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA---------~dVTTT~~r~GKF---E---ArFyh~ 274 (327)
T KOG0643|consen 220 ----------RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEA---------MDVTTTSTRAGKF---E---ARFYHL 274 (327)
T ss_pred ----------cceeeEEEeeecccccceecccccceEEecCCcee---------eeeeeecccccch---h---hhHHHH
Confidence 33333332233445677888998887776554321 1222222111111 0 001111
Q ss_pred eecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 005093 319 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 364 (715)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~ 364 (715)
+-+.+=+...| +-+.+..++++|||+ .|.+..++|-.+|..+|.
T Consensus 275 i~eEEigrvkG-HFGPINsvAfhPdGk-sYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 275 IFEEEIGRVKG-HFGPINSVAFHPDGK-SYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred HHHHHhccccc-cccCcceeEECCCCc-ccccCCCCceEEEEEecc
Confidence 11111122222 223678999999998 667777777778877764
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.5e-05 Score=66.11 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCC
Q 005093 545 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFT 624 (715)
Q Consensus 545 ~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (715)
.+.-+|++++. -+.+..+.|.||||+.++.+..++|++|..+|+.+++++...+++..--.
T Consensus 88 ~AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yydd----------------- 148 (227)
T COG4947 88 RAYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDD----------------- 148 (227)
T ss_pred HHHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccC-----------------
Confidence 34456777774 23557789999999999999999999999999999999887554321000
Q ss_pred CCCChhhHHHHHhcCchhhccCCC----------CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 625 ESPSVEDLTRFHSKSPISHISKVK----------TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 625 ~~~~~~~~~~~~~~sp~~~~~~i~----------~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
+.+. ++|..++..+. ..+.+..|..|+..+ +...+.+.+..+.++..+.+..+..|.+
T Consensus 149 --------Dv~y-nsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 149 --------DVYY-NSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred --------ceee-cChhhhccCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccccccHHHHHhccccccc
Confidence 0111 34444443333 346777888888774 4566777788777787777776655643
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0021 Score=63.20 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=40.7
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEE
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 114 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~ 114 (715)
....+++||||+.+|++...+ +...++....++....+.. .... ..++|+++|. +.++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~-~~~~L~~~~~~~~~~~~~~-g~~l----------~~PS~d~~g~-~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGD-GGRSLYVGPAGGPVRPVLT-GGSL----------TRPSWDPDGW-VWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcC-CCCEEEEEcCCCcceeecc-CCcc----------ccccccCCCC-EEEE
Confidence 578999999999999998333 5667777665555555442 1233 7999999964 5554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.1e-05 Score=79.91 Aligned_cols=114 Identities=15% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCCCcEEEEEcCCCCCCCCccc-hHHHHHH-Hh--CCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHH
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSY-SKSLAFL-SS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 553 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~-~~~~~~l-a~--~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~ 553 (715)
+...|++|++||.........| ..+...+ .. ..+.|+++|+...... ....+.. + .......+...|..|.+
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~~-n-~~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAVA-N-TRLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHHH-H-HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchhh-h-HHHHHHHHHHHHHHHHh
Confidence 4578999999995444312233 3344434 44 5899999998631110 0100000 0 00012345566777775
Q ss_pred cCCCCCceEEEEEeChhHHHHHHHHhhCCC--ceeEEEecCCcc
Q 005093 554 MGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLC 595 (715)
Q Consensus 554 ~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~~~~ 595 (715)
...++.++|.|+|||+||++|..++..... ++..+..+.|..
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 555889999999999999999988887666 788888777754
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0019 Score=66.01 Aligned_cols=240 Identities=14% Similarity=0.080 Sum_probs=135.2
Q ss_pred EEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEE--ec-CccccccccCCCcccceeecCCC--CeEEEEeecCCCC
Q 005093 47 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF--HV-PQTVHGSVYADGWFEGISWNSDE--TLIAYVAEEPSPS 121 (715)
Q Consensus 47 ~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~wSpDg--~~la~~~~~~~~~ 121 (715)
..+||-|.+++|.+...+ ++....++...+.- .+ +.++ ..++|||-| .-|+|.+.....
T Consensus 136 ~~k~s~~D~y~ARvv~~s-----l~i~e~t~n~~~~p~~~lr~~gi----------~dFsisP~~n~~~la~~tPEk~~- 199 (561)
T COG5354 136 VLKFSIDDKYVARVVGSS-----LYIHEITDNIEEHPFKNLRPVGI----------LDFSISPEGNHDELAYWTPEKLN- 199 (561)
T ss_pred eeeeeecchhhhhhccCe-----EEEEecCCccccCchhhccccce----------eeEEecCCCCCceEEEEccccCC-
Confidence 568899999999885432 33322233332111 11 1232 789999974 457787544311
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccE
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~ 201 (715)
...++.++.+-.+.+.... +-.....-++.|.+.|+.
T Consensus 200 --------------------------------------kpa~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~---- 236 (561)
T COG5354 200 --------------------------------------KPAMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKY---- 236 (561)
T ss_pred --------------------------------------CCcEEEEEEccCCCeeeee-eeEeecccEEEEecCCce----
Confidence 1234444444333322221 233345568899999999
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
|++...+... -+..+ -+.+.||++++ ....+...-...+.+.+..|+|++++++..+.-
T Consensus 237 ll~l~~t~~k--snKsy--fgesnLyl~~~-----------------~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~ 295 (561)
T COG5354 237 LLVLVMTHTK--SNKSY--FGESNLYLLRI-----------------TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGY 295 (561)
T ss_pred EEEEEEEeee--cccce--eccceEEEEee-----------------cccccceeccccccceeeeecccCCceeEEecc
Confidence 8887654431 11111 13357999997 433332222446678899999999999988832
Q ss_pred CCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 005093 282 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 361 (715)
Q Consensus 282 ~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~ 361 (715)
. . ..+-..|+.++-...+... .-..+.|+|.++++++..-..-...+-.
T Consensus 296 ~-------p--a~~s~~~lr~Nl~~~~Pe~----------------------~rNT~~fsp~~r~il~agF~nl~gni~i 344 (561)
T COG5354 296 M-------P--ASVSVFDLRGNLRFYFPEQ----------------------KRNTIFFSPHERYILFAGFDNLQGNIEI 344 (561)
T ss_pred c-------c--cceeecccccceEEecCCc----------------------ccccccccCcccEEEEecCCccccceEE
Confidence 1 1 1244556655321111110 1245678999999988766555556667
Q ss_pred EECCCCcEEEe-cCCCCCceeEEEeecCCEEEEEEeCC
Q 005093 362 VNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVSSSP 398 (715)
Q Consensus 362 ~d~~tg~~~~l-~~~~~~~~~~~~s~~~~~l~~~~~~~ 398 (715)
+|..+. ...+ .....+-+...|++|+..+.....++
T Consensus 345 ~~~~~r-f~~~~~~~~~n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 345 FDPAGR-FKVAGAFNGLNTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred eccCCc-eEEEEEeecCCceEeeccCCceEEEecCCCc
Confidence 787543 3333 22222346678899887666544443
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00024 Score=69.79 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=75.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-----cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-----~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
|+..+.+..+.-+ ..++...||++-|.+...... ....+.....+.|..|+.++|||.+. +-. ..+
T Consensus 120 D~~~IDt~~I~~~---~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~---S~G---~~s 190 (365)
T PF05677_consen 120 DGVKIDTMAIHQP---EAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGS---STG---PPS 190 (365)
T ss_pred CCEEEEEEEeeCC---CCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCcccc---CCC---CCC
Confidence 7788888776522 235667888888844332111 11234555677899999999999543 311 111
Q ss_pred CCccchhhHHHHHHHHHHcC-CCCCceEEEEEeChhHHHHHHHHhhC
Q 005093 536 VGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQA 581 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~a~~~ 581 (715)
....+.|..+.++||+++. .+.+++|.+.|||+||.+++.++.++
T Consensus 191 -~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 191 -RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred -HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 1233778889999999753 47889999999999999988766554
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00028 Score=68.43 Aligned_cols=231 Identities=13% Similarity=0.172 Sum_probs=113.1
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-----HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 464 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 464 ~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~-----~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
.++..++-. ..+++|+||-.|--+.+. ...|.. .++.+ .+.|.++-+|.+|...-.. .++..+..
T Consensus 10 ~v~V~v~G~----~~~~kp~ilT~HDvGlNh-~scF~~ff~~~~m~~i-~~~f~i~Hi~aPGqe~ga~----~~p~~y~y 79 (283)
T PF03096_consen 10 SVHVTVQGD----PKGNKPAILTYHDVGLNH-KSCFQGFFNFEDMQEI-LQNFCIYHIDAPGQEEGAA----TLPEGYQY 79 (283)
T ss_dssp EEEEEEESS------TTS-EEEEE--TT--H-HHHCHHHHCSHHHHHH-HTTSEEEEEE-TTTSTT---------TT---
T ss_pred EEEEEEEec----CCCCCceEEEeccccccc-hHHHHHHhcchhHHHH-hhceEEEEEeCCCCCCCcc----cccccccc
Confidence 455555532 334799999999844321 111222 23333 5679999999999554222 23444444
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc------------CCCC
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG------------TTDI 606 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~------------~~~~ 606 (715)
..++++.+.+..+.+.. .-+.+.-+|--+|+++-+.+|..+|+++.++|++++......+.. ...+
T Consensus 80 Psmd~LAe~l~~Vl~~f--~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~L~~~gm 157 (283)
T PF03096_consen 80 PSMDQLAEMLPEVLDHF--GLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWLLYSYGM 157 (283)
T ss_dssp --HHHHHCTHHHHHHHH--T---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH-------CT
T ss_pred cCHHHHHHHHHHHHHhC--CccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhccccccccc
Confidence 55777777777777763 346799999999999999999999999999999998764321110 0000
Q ss_pred CCc----eeeeccCCCCCC-----------CCCCCCChhhHHHHH----hc-CchhhccCCCCcEEEEeeCCCCcCCchH
Q 005093 607 PDW----CYVESYGSKGKD-----------SFTESPSVEDLTRFH----SK-SPISHISKVKTPTIFLLGAQDLRVPVSN 666 (715)
Q Consensus 607 ~~~----~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~-sp~~~~~~i~~P~Lii~G~~D~~v~~~~ 666 (715)
... .....|+..... .+.......+...+. .+ +.........||+|++.|+.-+.+ +.
T Consensus 158 t~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~~--~~ 235 (283)
T PF03096_consen 158 TSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSPHV--DD 235 (283)
T ss_dssp TS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTSTTH--HH
T ss_pred ccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCcch--hh
Confidence 000 000001100000 000000001111111 11 111123455699999999988766 67
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 667 GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 667 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
+.++..+|.. ....++.++++|-....++ .....+.+.=|++
T Consensus 236 vv~~ns~Ldp--~~ttllkv~dcGglV~eEq-P~klaea~~lFlQ 277 (283)
T PF03096_consen 236 VVEMNSKLDP--TKTTLLKVADCGGLVLEEQ-PGKLAEAFKLFLQ 277 (283)
T ss_dssp HHHHHHHS-C--CCEEEEEETT-TT-HHHH--HHHHHHHHHHHHH
T ss_pred HHHHHhhcCc--ccceEEEecccCCcccccC-cHHHHHHHHHHHc
Confidence 7778777743 4678999999876544222 2244455554543
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00045 Score=71.94 Aligned_cols=160 Identities=9% Similarity=0.138 Sum_probs=94.2
Q ss_pred CCCcccceeecC-CCCeEEEEeecCCCCCCCccCCCC--CCCCCCc-----CCCCCCCCCcccCCcCcccC-CccCceEE
Q 005093 95 ADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGST--KGGSSDK-----DCNSWKGQGDWEEDWGETYA-GKRQPSLF 165 (715)
Q Consensus 95 ~~~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~g~~~~-~~~~~~l~ 165 (715)
+...+..+.|.| |..+||...++.... .|.+... +.....+ ...+.+..++|.|-....+. ......|-
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~--lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~ 703 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQIN--LWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIE 703 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEE--EEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceee
Confidence 334557899999 788899877665433 2322211 1111111 12333344555543322222 22347899
Q ss_pred EEEccCCceE-eecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhh
Q 005093 166 VININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 244 (715)
Q Consensus 166 ~~~~~~g~~~-~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (715)
+||+.+++.+ .+ ......+.+++|||||+. |+.+. .+..|.++..
T Consensus 704 lWDl~~~~~~~~l--~gHtdqIf~~AWSpdGr~----~AtVc---------------KDg~~rVy~P------------- 749 (1012)
T KOG1445|consen 704 LWDLANAKLYSRL--VGHTDQIFGIAWSPDGRR----IATVC---------------KDGTLRVYEP------------- 749 (1012)
T ss_pred eeehhhhhhhhee--ccCcCceeEEEECCCCcc----eeeee---------------cCceEEEeCC-------------
Confidence 9999988765 34 233346779999999999 98876 3346777774
Q ss_pred ccCCCCCCceecCCCCc----cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCC
Q 005093 245 ESSSEDLPVVNLTESIS----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 245 ~~~~~~~~~~~lt~~~~----~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
.++ .+.+.+..+ .-..+.|.=||+.|+.+..+. ....+|.++|.++
T Consensus 750 ----rs~-e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk-------~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 750 ----RSR-EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK-------SSERQVQMYDAQT 799 (1012)
T ss_pred ----CCC-CCccccCCCCccCcceeEEEEecCcEEEEecccc-------cchhhhhhhhhhh
Confidence 333 334444333 245688999999988877664 2334566666554
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.9e-05 Score=69.84 Aligned_cols=89 Identities=25% Similarity=0.459 Sum_probs=53.6
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHhCCcE---EEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 484 IVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 484 vv~iHGg~~~~~~~~~~~~~~~la~~G~~---vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
|||+||.... ....|..+.+.|+++||. |++++|-.... ........ .....+.++.++|+.+++. ...
T Consensus 4 VVlVHG~~~~-~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~--~~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa- 75 (219)
T PF01674_consen 4 VVLVHGTGGN-AYSNWSTLAPYLKAAGYCDSEVYALTYGSGNG--SPSVQNAH--MSCESAKQLRAFIDAVLAY--TGA- 75 (219)
T ss_dssp EEEE--TTTT-TCGGCCHHHHHHHHTT--CCCEEEE--S-CCH--HTHHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred EEEECCCCcc-hhhCHHHHHHHHHHcCCCcceeEeccCCCCCC--CCcccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence 8899995532 256888999999999999 79999854221 01111000 1112246778888888765 345
Q ss_pred eEEEEEeChhHHHHHHHHhh
Q 005093 561 KVTVVGGSHGGFLTTHLIGQ 580 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~ 580 (715)
||-|+||||||.++-+++.-
T Consensus 76 kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp -EEEEEETCHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999999887753
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0024 Score=60.97 Aligned_cols=255 Identities=11% Similarity=0.078 Sum_probs=140.1
Q ss_pred ccccccccccccceEEEEEEEeec------------CCCCcc-ccccCCCccccccceEEeeCCCCceEEEEecCCCCCC
Q 005093 2 FSISQPNLLANKRKKFMLSTVISK------------ENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 68 (715)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~ 68 (715)
|+..+.=+-+...+..|.++|+.. ++..+. .+ ...|..+...+....|-|-...|+-.++. +.-
T Consensus 120 fs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPv-IRTlYDH~devn~l~FHPre~ILiS~srD--~tv 196 (430)
T KOG0640|consen 120 FSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPV-IRTLYDHVDEVNDLDFHPRETILISGSRD--NTV 196 (430)
T ss_pred eCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCce-EeehhhccCcccceeecchhheEEeccCC--CeE
Confidence 444444555667888888877761 111000 11 11244455667888888988877655443 344
Q ss_pred eEEEEecC--CccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCC
Q 005093 69 IQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 146 (715)
Q Consensus 69 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (715)
.+|.+.+. +++.++++....+ ..++|.|.|.+|+...+.
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~v----------rsiSfHPsGefllvgTdH----------------------------- 237 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPV----------RSISFHPSGEFLLVGTDH----------------------------- 237 (430)
T ss_pred EEEecccHHHHHHHHHhhcccee----------eeEeecCCCceEEEecCC-----------------------------
Confidence 45555422 2333444433333 799999999999885332
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceEeec--CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCc
Q 005093 147 DWEEDWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 224 (715)
Q Consensus 147 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~--~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~ 224 (715)
+.+.++|++|-+-..-. .......+.++.+|+.|+ |+.++.. ++
T Consensus 238 ---------------p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-----lYvTaSk--------------DG 283 (430)
T KOG0640|consen 238 ---------------PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-----LYVTASK--------------DG 283 (430)
T ss_pred ---------------CceeEEeccceeEeeecCcccccccceeEEEecCCcc-----EEEEecc--------------CC
Confidence 56788888765432211 011223577899999998 5655532 23
Q ss_pred eEEEEecccccchhhhhhhhccCCCCCCce-ecCC--CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecC
Q 005093 225 ALYAVRVSLYKSEASELELKESSSEDLPVV-NLTE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 301 (715)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~--~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~ 301 (715)
.|-++|= .++... .+-+ ....+.+..|+.+||+|+-...+. -++++.+.
T Consensus 284 ~IklwDG-----------------VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS-----------~vkLWEi~ 335 (430)
T KOG0640|consen 284 AIKLWDG-----------------VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS-----------TVKLWEIS 335 (430)
T ss_pred cEEeecc-----------------ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc-----------eeeeeeec
Confidence 5666662 233322 2222 222478899999999886443332 36677777
Q ss_pred CCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 005093 302 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 376 (715)
Q Consensus 302 ~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 376 (715)
++.....-.+.. ..+. + .--.+..|.....+++| .+.....|..||..++....+....
T Consensus 336 t~R~l~~YtGAg---------~tgr--q---~~rtqAvFNhtEdyVl~--pDEas~slcsWdaRtadr~~l~slg 394 (430)
T KOG0640|consen 336 TGRMLKEYTGAG---------TTGR--Q---KHRTQAVFNHTEDYVLF--PDEASNSLCSWDARTADRVALLSLG 394 (430)
T ss_pred CCceEEEEecCC---------cccc--h---hhhhhhhhcCccceEEc--cccccCceeeccccchhhhhhcccC
Confidence 765422111100 0000 0 00123345545555554 3344568888998888777665443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0031 Score=62.23 Aligned_cols=177 Identities=16% Similarity=0.132 Sum_probs=96.6
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEe-cCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWA-PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~s-pdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
..|+.+++++++.+.+. ... ...+.+. +||+ ++++. . ..+.++|+
T Consensus 22 ~~i~~~~~~~~~~~~~~--~~~--~~G~~~~~~~g~-----l~v~~-~---------------~~~~~~d~--------- 67 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVID--LPG--PNGMAFDRPDGR-----LYVAD-S---------------GGIAVVDP--------- 67 (246)
T ss_dssp TEEEEEETTTTEEEEEE--SSS--EEEEEEECTTSE-----EEEEE-T---------------TCEEEEET---------
T ss_pred CEEEEEECCCCeEEEEe--cCC--CceEEEEccCCE-----EEEEE-c---------------CceEEEec---------
Confidence 67999999999887662 222 4455666 6644 54443 1 13555586
Q ss_pred hhhhccCCCCCCceecCCC------CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceee
Q 005093 241 LELKESSSEDLPVVNLTES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 314 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~~------~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~ 314 (715)
++++.+.+... .....+.+++|||+ |+++........ ......||+++.. ++...+....
T Consensus 68 --------~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~--~~~~g~v~~~~~~-~~~~~~~~~~-- 133 (246)
T PF08450_consen 68 --------DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGAS--GIDPGSVYRIDPD-GKVTVVADGL-- 133 (246)
T ss_dssp --------TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTT--CGGSEEEEEEETT-SEEEEEEEEE--
T ss_pred --------CCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccc--cccccceEEECCC-CeEEEEecCc--
Confidence 66666555432 22467899999998 777766542110 0111569999877 3432221111
Q ss_pred eeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC--CCcE---EEecC-CCCC--ceeEEEee
Q 005093 315 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS--SGEL---LRITP-AESN--FSWSLLTL 386 (715)
Q Consensus 315 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~--tg~~---~~l~~-~~~~--~~~~~~s~ 386 (715)
.....++|+||++.||++.... .+|++++++ +++. +.+.. .... .....++.
T Consensus 134 ------------------~~pNGi~~s~dg~~lyv~ds~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~ 193 (246)
T PF08450_consen 134 ------------------GFPNGIAFSPDGKTLYVADSFN--GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS 193 (246)
T ss_dssp ------------------SSEEEEEEETTSSEEEEEETTT--TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT
T ss_pred ------------------ccccceEECCcchheeeccccc--ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC
Confidence 0234678999999888755443 468888775 3312 22222 1111 22223344
Q ss_pred cCCEEEEEEeCCCCCCeEEEEeec
Q 005093 387 DGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 387 ~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
+| .|+++.. ....|++++..
T Consensus 194 ~G-~l~va~~---~~~~I~~~~p~ 213 (246)
T PF08450_consen 194 DG-NLWVADW---GGGRIVVFDPD 213 (246)
T ss_dssp TS--EEEEEE---TTTEEEEEETT
T ss_pred CC-CEEEEEc---CCCEEEEECCC
Confidence 44 4555443 44468888755
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.023 Score=54.82 Aligned_cols=197 Identities=12% Similarity=0.103 Sum_probs=123.9
Q ss_pred ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec
Q 005093 99 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 178 (715)
Q Consensus 99 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~ 178 (715)
+..+.||+||..++-.+++ ..|.++|...|+.....
T Consensus 17 i~sl~fs~~G~~litss~d--------------------------------------------Dsl~LYd~~~g~~~~ti 52 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSED--------------------------------------------DSLRLYDSLSGKQVKTI 52 (311)
T ss_pred eeEEEecCCCCEEEEecCC--------------------------------------------CeEEEEEcCCCceeeEe
Confidence 4799999999988875432 46889999888765542
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecC
Q 005093 179 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT 257 (715)
Q Consensus 179 ~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt 257 (715)
....+.+.-+.|...... +++++.. .+..|..+++ .+.+ .+...
T Consensus 53 -~skkyG~~~~~Fth~~~~----~i~sStk-------------~d~tIryLsl-----------------~dNkylRYF~ 97 (311)
T KOG1446|consen 53 -NSKKYGVDLACFTHHSNT----VIHSSTK-------------EDDTIRYLSL-----------------HDNKYLRYFP 97 (311)
T ss_pred -ecccccccEEEEecCCce----EEEccCC-------------CCCceEEEEe-----------------ecCceEEEcC
Confidence 455667778889887777 7777632 1236888887 5555 45556
Q ss_pred CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCC
Q 005093 258 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 337 (715)
Q Consensus 258 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 337 (715)
.+...+.+...||-+..++-.+.+. .|.++|+...+-+-+- . ..+..-
T Consensus 98 GH~~~V~sL~~sP~~d~FlS~S~D~-----------tvrLWDlR~~~cqg~l-------~--------------~~~~pi 145 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKDDTFLSSSLDK-----------TVRLWDLRVKKCQGLL-------N--------------LSGRPI 145 (311)
T ss_pred CCCceEEEEEecCCCCeEEecccCC-----------eEEeeEecCCCCceEE-------e--------------cCCCcc
Confidence 6667789999999887665444443 4788888754331110 0 012334
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEECC---CCcEEEecCC---CCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 338 NPWLSDGCTMLLSSIWGSSQVIISVNVS---SGELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 338 ~~~~~dg~~l~~~~~~~~~~~l~~~d~~---tg~~~~l~~~---~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
.++.|.|- ++....... .|-.+|++ .|-.+.+... ........||+||..+++.. +-..++++|.-+
T Consensus 146 ~AfDp~GL-ifA~~~~~~--~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT----~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 146 AAFDPEGL-IFALANGSE--LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST----NASFIYLLDAFD 218 (311)
T ss_pred eeECCCCc-EEEEecCCC--eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe----CCCcEEEEEccC
Confidence 56888884 434433333 45555654 3444444433 12344568999999888754 334577777555
Q ss_pred cC
Q 005093 412 KA 413 (715)
Q Consensus 412 ~~ 413 (715)
|+
T Consensus 219 G~ 220 (311)
T KOG1446|consen 219 GT 220 (311)
T ss_pred Cc
Confidence 54
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00044 Score=67.86 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=57.9
Q ss_pred CCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHH
Q 005093 646 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 646 ~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 710 (715)
...+|-|++.++.|.+++.+..+++.+..++.|.+++...+++..|.-......++.++.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 44589999999999999999999999999999999999999999998777777778888887764
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0001 Score=77.69 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=66.0
Q ss_pred CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHH
Q 005093 496 LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 575 (715)
Q Consensus 496 ~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~ 575 (715)
...|..+++.|++.||.+ ..|++| +|.+|+.. ......++++.+.++.+.+.. ...++.|+||||||.++.
T Consensus 107 ~~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~---~~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~ 177 (440)
T PLN02733 107 VYYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQS---NRLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVK 177 (440)
T ss_pred HHHHHHHHHHHHHcCCcc-CCCccc---CCCCcccc---ccHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHH
Confidence 346788899999999876 789998 66666532 111223567777777776652 347899999999999999
Q ss_pred HHHhhCCCc----eeEEEecCCcc
Q 005093 576 HLIGQAPDK----FVAAAARNPLC 595 (715)
Q Consensus 576 ~~a~~~p~~----~~~~v~~~~~~ 595 (715)
.++..+|+. ++.+|++++..
T Consensus 178 ~fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 178 CFMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred HHHHHCCHhHHhHhccEEEECCCC
Confidence 998887763 57777766644
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.001 Score=61.57 Aligned_cols=135 Identities=7% Similarity=0.076 Sum_probs=85.8
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|.+||..+|...+- ...+..+.++..|+||+ |+.++.. ..|-.+|.
T Consensus 165 ~tVRLWD~rTgt~v~s--L~~~s~VtSlEvs~dG~-----ilTia~g---------------ssV~Fwda---------- 212 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQS--LEFNSPVTSLEVSQDGR-----ILTIAYG---------------SSVKFWDA---------- 212 (334)
T ss_pred CceEEEEeccCcEEEE--EecCCCCcceeeccCCC-----EEEEecC---------------ceeEEecc----------
Confidence 5689999999876554 34455788899999999 5555421 13445553
Q ss_pred hhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceec
Q 005093 242 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 321 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~ 321 (715)
.+-....-..-+..+.+.+.+|+-. ++....++ .-+|.+|..++..+-.-
T Consensus 213 -------ksf~~lKs~k~P~nV~SASL~P~k~-~fVaGged----------~~~~kfDy~TgeEi~~~------------ 262 (334)
T KOG0278|consen 213 -------KSFGLLKSYKMPCNVESASLHPKKE-FFVAGGED----------FKVYKFDYNTGEEIGSY------------ 262 (334)
T ss_pred -------ccccceeeccCccccccccccCCCc-eEEecCcc----------eEEEEEeccCCceeeec------------
Confidence 2222222222344577888999874 43344332 34889999887753221
Q ss_pred CCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 005093 322 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 365 (715)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~ 365 (715)
..| +-..+..+.|+|||. +|.+.+++|..+||...+.
T Consensus 263 -----nkg-h~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 263 -----NKG-HFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred -----ccC-CCCceEEEEECCCCc-eeeccCCCceEEEEEecCC
Confidence 011 112455778999997 8888899999999988763
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.004 Score=67.56 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=58.1
Q ss_pred CCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCc
Q 005093 145 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 224 (715)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~ 224 (715)
++.|..+ +-.+.......+.+|.+...+=..+ ......++.++|.|-..+ ...++-.+ .
T Consensus 374 DlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~--F~HndfVTcVaFnPvDDr----yFiSGSLD--------------~ 432 (712)
T KOG0283|consen 374 DLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKV--FSHNDFVTCVAFNPVDDR----YFISGSLD--------------G 432 (712)
T ss_pred ecccccC-CeeEeccccccEEeecCCCcceeeE--EecCCeeEEEEecccCCC----cEeecccc--------------c
Confidence 3445443 2333334456788888876654444 344556889999996665 33333222 2
Q ss_pred eEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 225 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
.+-++++ ...++.--+.-..-+....|+|||+..+..+..
T Consensus 433 KvRiWsI-----------------~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 433 KVRLWSI-----------------SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred ceEEeec-----------------CcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence 3333343 234444444444568889999999988766655
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.62 E-value=8.3e-05 Score=49.15 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=28.4
Q ss_pred eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEe
Q 005093 254 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 297 (715)
Q Consensus 254 ~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~ 297 (715)
++++........|.|||||++|+|++++.. .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~------~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRND------RGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--------SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCC------CCCcCEEC
Confidence 567888888999999999999999999852 24556774
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.014 Score=59.83 Aligned_cols=158 Identities=15% Similarity=0.246 Sum_probs=93.2
Q ss_pred ccceEEeeCCCC--ceEEEEecCCCCCCeEEEEe---cCCccEEEEec-CccccccccCCCcccceeecCCCCeEEEEee
Q 005093 43 TGASAVVPSPSG--SKLLVVRNPENESPIQFELW---SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAE 116 (715)
Q Consensus 43 ~~~~~~~~Spdg--~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~ 116 (715)
.+++...|||-| ..|||..-..++++-...++ .+......+-. ..+. .+.|.+.|++|.+...
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~-----------qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV-----------QLKWQVLGKYLLVLVM 242 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc-----------EEEEecCCceEEEEEE
Confidence 568889999974 44666544333444333444 22221111111 1222 7899999999999877
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCC
Q 005093 117 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~ 196 (715)
........+. |+ .+||++++.....+.. ..-...+.++.|+|+++
T Consensus 243 t~~ksnKsyf--------------------------ge-------snLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~ 287 (561)
T COG5354 243 THTKSNKSYF--------------------------GE-------SNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSS 287 (561)
T ss_pred Eeeeccccee--------------------------cc-------ceEEEEeeccccccee--ccccccceeeeecccCC
Confidence 6542211110 22 7899999974443333 12234678999999999
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEE
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~ 276 (715)
+ ++..... -+..+-.+|+ .+.-...+ ++..-..+.|||.+++++
T Consensus 288 ~----F~vi~g~-------------~pa~~s~~~l-----------------r~Nl~~~~--Pe~~rNT~~fsp~~r~il 331 (561)
T COG5354 288 R----FAVISGY-------------MPASVSVFDL-----------------RGNLRFYF--PEQKRNTIFFSPHERYIL 331 (561)
T ss_pred c----eeEEecc-------------cccceeeccc-----------------ccceEEec--CCcccccccccCcccEEE
Confidence 9 7766521 1124556665 34422222 333445689999999999
Q ss_pred EEecCC
Q 005093 277 FLSAKS 282 (715)
Q Consensus 277 ~~~~~~ 282 (715)
+..-..
T Consensus 332 ~agF~n 337 (561)
T COG5354 332 FAGFDN 337 (561)
T ss_pred EecCCc
Confidence 987664
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0027 Score=58.83 Aligned_cols=171 Identities=15% Similarity=0.196 Sum_probs=107.4
Q ss_pred ccccccccccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCcc
Q 005093 2 FSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQL 79 (715)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~ 79 (715)
|+-....+.+.....-+.++|++....++.-+...+ +++....|--..+.|+-..+. . -..+| .+|..
T Consensus 108 f~~ds~~lltgg~ekllrvfdln~p~App~E~~ght-----g~Ir~v~wc~eD~~iLSSadd--~---tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 108 FSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT-----GGIRTVLWCHEDKCILSSADD--K---TVRLWDHRTGTE 177 (334)
T ss_pred ecccchhhhccchHHHhhhhhccCCCCCchhhcCCC-----CcceeEEEeccCceEEeeccC--C---ceEEEEeccCcE
Confidence 334445555666666677778888877666555555 889999996666666543222 2 24455 55666
Q ss_pred EEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCc
Q 005093 80 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK 159 (715)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 159 (715)
.+.++....+ +++-.|+||+.|-.. .
T Consensus 178 v~sL~~~s~V----------tSlEvs~dG~ilTia-~------------------------------------------- 203 (334)
T KOG0278|consen 178 VQSLEFNSPV----------TSLEVSQDGRILTIA-Y------------------------------------------- 203 (334)
T ss_pred EEEEecCCCC----------cceeeccCCCEEEEe-c-------------------------------------------
Confidence 6666666665 799999999977553 1
Q ss_pred cCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 160 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 160 ~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
...|-.||.++=.+..- -.-...+.+++.+|+-. ++..+. ....+|.+|.
T Consensus 204 -gssV~Fwdaksf~~lKs--~k~P~nV~SASL~P~k~-----~fVaGg--------------ed~~~~kfDy-------- 253 (334)
T KOG0278|consen 204 -GSSVKFWDAKSFGLLKS--YKMPCNVESASLHPKKE-----FFVAGG--------------EDFKVYKFDY-------- 253 (334)
T ss_pred -CceeEEeccccccceee--ccCccccccccccCCCc-----eEEecC--------------cceEEEEEec--------
Confidence 14466677654332221 22234566788999874 444442 2236888887
Q ss_pred hhhhhccCCCCCCceec--CCCCccccceeEcCCCCeE
Q 005093 240 ELELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFL 275 (715)
Q Consensus 240 ~~~~~~~~~~~~~~~~l--t~~~~~~~~~~~spdg~~l 275 (715)
.+++..-. ..+.+.+..++|||||..-
T Consensus 254 ---------~TgeEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 254 ---------NTGEEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred ---------cCCceeeecccCCCCceEEEEECCCCcee
Confidence 66655444 4556778899999999743
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00012 Score=48.47 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=25.3
Q ss_pred cccccCCCccccccceEEeeCCCCceEEEEecCCC-CCCeEE
Q 005093 31 VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-ESPIQF 71 (715)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~-~~~~~~ 71 (715)
.|+|..+ +....|+|||||++|+|++++++ +..+||
T Consensus 2 ~~~t~~~-----~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 2 KQLTNSP-----GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEES-SS-----SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCcccCC-----ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3566666 67899999999999999998762 344454
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00027 Score=72.19 Aligned_cols=135 Identities=11% Similarity=0.169 Sum_probs=74.4
Q ss_pred cccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEE-EecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 40 VEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 40 ~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
++.+.+..-+|||||.-|+-..++ .+..|| ..|-.+.. .+....+ ...+|.|+...++|....
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GED-----G~iKiWSrsGMLRStl~Q~~~~v----------~c~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGED-----GVIKIWSRSGMLRSTVVQNEESI----------RCARWAPNSNSIVFCQGG 166 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCC-----ceEEEEeccchHHHHHhhcCcee----------EEEEECCCCCceEEecCC
Confidence 344667888999999988766443 478899 67765432 2322333 799999999999997543
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 194 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spd 194 (715)
.-.- -++........|.......-...|.+...-...+......-+||..+..+..- .+.++.+.+++|.||
T Consensus 167 h~~I---KpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S--~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 167 HISI---KPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS--AAEEYAITSVAFNPE 238 (737)
T ss_pred eEEE---eecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC--Chhccceeeeeeccc
Confidence 2110 01111222222333222221222222211111111235667787766554433 566778888999998
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0029 Score=57.73 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=76.2
Q ss_pred CcEEEEEcCCCCCC-CCccchHHHHHHHhCCcEEEEEcCCCCCC-CchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 481 DPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYRGSLG-FGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 481 ~P~vv~iHGg~~~~-~~~~~~~~~~~la~~G~~vi~~d~rG~~~-~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
.-.|||+-|-+..- .......+..+|.+.++..+.+..+.+.. ||... -..+.+|+..+++++...+.
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~s--------lk~D~edl~~l~~Hi~~~~f-- 105 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFS--------LKDDVEDLKCLLEHIQLCGF-- 105 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccccccccccc--------ccccHHHHHHHHHHhhccCc--
Confidence 35677776622221 12233456778899999999999886432 54432 12358889999998776643
Q ss_pred CceEEEEEeChhHHHHHHHHhh--CCCceeEEEecCCcchhh
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCNLA 598 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~~~~ 598 (715)
.+.|+++|||-|..-.+++++. .+..+.++|+.+|+.|..
T Consensus 106 St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 106 STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 3589999999999998888743 355789999999998865
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0021 Score=65.37 Aligned_cols=227 Identities=12% Similarity=0.091 Sum_probs=131.0
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
+-+.++|-.-+++ |+ .+++...+|.+...|....+.+++-... +..+.....+|||+.|+..
T Consensus 422 VcAvtIS~~trhV-yT--gGkgcVKVWdis~pg~k~PvsqLdcl~r-----dnyiRSckL~pdgrtLivG---------- 483 (705)
T KOG0639|consen 422 VCAVTISNPTRHV-YT--GGKGCVKVWDISQPGNKSPVSQLDCLNR-----DNYIRSCKLLPDGRTLIVG---------- 483 (705)
T ss_pred EEEEEecCCccee-Ee--cCCCeEEEeeccCCCCCCccccccccCc-----ccceeeeEecCCCceEEec----------
Confidence 4456667666654 33 1123333333332333344444433221 1234788999999999884
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC-CCCCCccceEEEecCCCCCccEEE
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQYLV 203 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~~~~spdg~~~~~~i~ 203 (715)
|+ ...|-+|||....++.-.. +........++.|||.+ +.
T Consensus 484 ----------------------------Ge------astlsiWDLAapTprikaeltssapaCyALa~spDak-----vc 524 (705)
T KOG0639|consen 484 ----------------------------GE------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-----VC 524 (705)
T ss_pred ----------------------------cc------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-----ee
Confidence 22 2678999998776543210 22223455778999998 88
Q ss_pred EEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCC
Q 005093 204 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 283 (715)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~ 283 (715)
|+.-.++ .|.++|| .+-..++++.........+..|+||.+| |+...+
T Consensus 525 FsccsdG--------------nI~vwDL----------------hnq~~VrqfqGhtDGascIdis~dGtkl-WTGGlD- 572 (705)
T KOG0639|consen 525 FSCCSDG--------------NIAVWDL----------------HNQTLVRQFQGHTDGASCIDISKDGTKL-WTGGLD- 572 (705)
T ss_pred eeeccCC--------------cEEEEEc----------------ccceeeecccCCCCCceeEEecCCCcee-ecCCCc-
Confidence 8873322 4666776 1334566777777778889999999988 444332
Q ss_pred CCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 005093 284 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 284 ~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d 363 (715)
..|.-+|+..+.. +... + +...+..+...|.+..+++. ... ..++.+.
T Consensus 573 ---------ntvRcWDlregrq--lqqh--------------d----F~SQIfSLg~cP~~dWlavG-Men--s~vevlh 620 (705)
T KOG0639|consen 573 ---------NTVRCWDLREGRQ--LQQH--------------D----FSSQIFSLGYCPTGDWLAVG-MEN--SNVEVLH 620 (705)
T ss_pred ---------cceeehhhhhhhh--hhhh--------------h----hhhhheecccCCCccceeee-ccc--CcEEEEe
Confidence 2356667665432 1110 0 11235566778888866553 323 3566666
Q ss_pred CCCCcEEEecCCCCCceeEEEeecCCEEE
Q 005093 364 VSSGELLRITPAESNFSWSLLTLDGDNII 392 (715)
Q Consensus 364 ~~tg~~~~l~~~~~~~~~~~~s~~~~~l~ 392 (715)
....+..+|.....-+-..-|+..|.+++
T Consensus 621 ~skp~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 621 TSKPEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred cCCccceeecccccEEEEEEecccCceee
Confidence 65566666766555222245677777654
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.011 Score=66.60 Aligned_cols=225 Identities=16% Similarity=0.226 Sum_probs=124.0
Q ss_pred ccceEEeeCCCCceEEEEecC-C----CCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 43 TGASAVVPSPSGSKLLVVRNP-E----NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
.....+..+|+|..++|+... + .....+|.. + ++..+........ ..+.|||||+.++|....
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-d-~~~~~~~~~~~~~----------~~~~~spdg~~~~~~~~~ 80 (620)
T COG1506 13 ARVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVS-D-GKTVRLLTFGGGV----------SELRWSPDGSVLAFVSTD 80 (620)
T ss_pred hcccCcccCCCCceeEEeeccccccccccccceEEE-e-cccccccccCCcc----------cccccCCCCCEEEEEecc
Confidence 446778999999999999874 1 122233332 2 2212222112222 689999999999998622
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
. . ...++|+++.+ | .+ ......+....|+|+|+.
T Consensus 81 ~-----------------------------------~-----~~~~l~l~~~~-g---~~--~~~~~~v~~~~~~~~g~~ 114 (620)
T COG1506 81 G-----------------------------------G-----RVAQLYLVDVG-G---LI--TKTAFGVSDARWSPDGDR 114 (620)
T ss_pred C-----------------------------------C-----CcceEEEEecC-C---ce--eeeecccccceeCCCCCe
Confidence 1 1 13779999987 4 22 233345678899999999
Q ss_pred CccEEEEEeecCccceeee---------ee-ee-c-CCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccc
Q 005093 198 LHQYLVFVGWSSETRKLGI---------KY-CY-N-RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFF 265 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~---------~~-~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~ 265 (715)
+++........+.+. .+ .. . ...++|++|. .+ ....+.........
T Consensus 115 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~-----------------~~-~~~~~~~~~~~~~~ 172 (620)
T COG1506 115 ----IAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDI-----------------ES-KLIKLGLGNLDVVS 172 (620)
T ss_pred ----EEEEecccccccCCceeeeecccceeecCCCCcccceEEEcc-----------------Cc-ccccccCCCCceee
Confidence 998432221112221 01 00 1 3456777874 33 44455555556677
Q ss_pred eeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCC
Q 005093 266 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 345 (715)
Q Consensus 266 ~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~ 345 (715)
++++++++.++......... .....+++....++....++.+.. +...+.|.++|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~gk 228 (620)
T COG1506 173 FATDGDGRLVASIRLDDDAD----PWVTNLYVLIEGNGELESLTPGEG--------------------SISKLAFDADGK 228 (620)
T ss_pred eeeCCCCceeEEeeeccccC----CceEeeEEEecCCCceEEEcCCCc--------------------eeeeeeeCCCCC
Confidence 77777788777666554211 111223333333434333332221 234556888888
Q ss_pred EEEEEeeeCC-----eeEEEEEECCCCcEEE
Q 005093 346 TMLLSSIWGS-----SQVIISVNVSSGELLR 371 (715)
Q Consensus 346 ~l~~~~~~~~-----~~~l~~~d~~tg~~~~ 371 (715)
.+.+...... ...++.++...++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 259 (620)
T COG1506 229 SIALLGTESDRGLAEGDFILLLDGELGEVDG 259 (620)
T ss_pred eeEEeccCCccCccccceEEEEeccccccce
Confidence 7776665332 2245555544455444
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.017 Score=55.66 Aligned_cols=178 Identities=14% Similarity=0.175 Sum_probs=105.4
Q ss_pred ccccccceEEEEEEEeecCC---CCccccccCC---CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEE
Q 005093 8 NLLANKRKKFMLSTVISKEN---ENSVTFQWAP---FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEK 81 (715)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~ 81 (715)
.|-...|...||-+++.-+. ..+.+.|-.| +.++.+.+.+.+. +|.++|-.+++ +.-.+|.+....+...
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssD--etI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSD--ETIHIYDMRKRKQLGI 78 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCC--CcEEEEeccchhhhcc
Confidence 45566788889987776443 2334554444 3345666777776 67777755444 3333444444444444
Q ss_pred EEecCccccccccCCCcccceeecCCCC--eEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCc
Q 005093 82 EFHVPQTVHGSVYADGWFEGISWNSDET--LIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK 159 (715)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~wSpDg~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 159 (715)
+......+ +.+.|+++-. +|+-.++
T Consensus 79 ll~Hagsi----------taL~F~~~~S~shLlS~sd------------------------------------------- 105 (362)
T KOG0294|consen 79 LLSHAGSI----------TALKFYPPLSKSHLLSGSD------------------------------------------- 105 (362)
T ss_pred eeccccce----------EEEEecCCcchhheeeecC-------------------------------------------
Confidence 55443333 7888888765 5544332
Q ss_pred cCceEEEEEccCCc-eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh
Q 005093 160 RQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238 (715)
Q Consensus 160 ~~~~l~~~~~~~g~-~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 238 (715)
..+|.+|+...=+ +..+. +....+..++..|.|+ |+.+.. ++..|-.+||
T Consensus 106 -DG~i~iw~~~~W~~~~slK--~H~~~Vt~lsiHPS~K-----LALsVg--------------~D~~lr~WNL------- 156 (362)
T KOG0294|consen 106 -DGHIIIWRVGSWELLKSLK--AHKGQVTDLSIHPSGK-----LALSVG--------------GDQVLRTWNL------- 156 (362)
T ss_pred -CCcEEEEEcCCeEEeeeec--ccccccceeEecCCCc-----eEEEEc--------------CCceeeeehh-------
Confidence 2567888764321 12221 2223488899999998 676653 2335666776
Q ss_pred hhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 239 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 239 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
-.|....+.+-......+.|+|.|.+++....+
T Consensus 157 ----------V~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 157 ----------VRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred ----------hcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 445554444444455669999999987766544
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0057 Score=58.73 Aligned_cols=185 Identities=10% Similarity=0.070 Sum_probs=106.1
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC
Q 005093 100 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 179 (715)
Q Consensus 100 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~ 179 (715)
....||+-|.+||..... ..|.+||+.|-..-++-
T Consensus 27 ~~~~Fs~~G~~lAvGc~n--------------------------------------------G~vvI~D~~T~~iar~l- 61 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCAN--------------------------------------------GRVVIYDFDTFRIARML- 61 (405)
T ss_pred ceEEeccCcceeeeeccC--------------------------------------------CcEEEEEccccchhhhh-
Confidence 588999999999986432 55889999886654441
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCC
Q 005093 180 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 259 (715)
Q Consensus 180 ~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 259 (715)
+..-.++..++||+||+. |+.++ ++..|-.+|+ ..|....-..-
T Consensus 62 saH~~pi~sl~WS~dgr~----LltsS---------------~D~si~lwDl-----------------~~gs~l~rirf 105 (405)
T KOG1273|consen 62 SAHVRPITSLCWSRDGRK----LLTSS---------------RDWSIKLWDL-----------------LKGSPLKRIRF 105 (405)
T ss_pred hccccceeEEEecCCCCE----eeeec---------------CCceeEEEec-----------------cCCCceeEEEc
Confidence 344457889999999998 88765 4446777887 33333221112
Q ss_pred CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCc
Q 005093 260 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 339 (715)
Q Consensus 260 ~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 339 (715)
+..+....|.|-.+..+.+...+. +-++++++....+.|....+. +.. .+.....
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~----------sp~vi~~s~~~h~~Lp~d~d~-----------dln----~sas~~~ 160 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEE----------SPVVIDFSDPKHSVLPKDDDG-----------DLN----SSASHGV 160 (405)
T ss_pred cCccceeeeccccCCeEEEEEecC----------CcEEEEecCCceeeccCCCcc-----------ccc----ccccccc
Confidence 334666778887666655554431 135556655444444332211 110 0112235
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcEE---EecCCCCCceeEEEeecCCEEEEE
Q 005093 340 WLSDGCTMLLSSIWGSSQVIISVNVSSGELL---RITPAESNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 340 ~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~---~l~~~~~~~~~~~~s~~~~~l~~~ 394 (715)
|.+.|++|+.. ...| .|..+|..|-+.. +++... .+-...++..|+.+++-
T Consensus 161 fdr~g~yIitG-tsKG--kllv~~a~t~e~vas~rits~~-~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 161 FDRRGKYIITG-TSKG--KLLVYDAETLECVASFRITSVQ-AIKQIIVSRKGRFLIIN 214 (405)
T ss_pred ccCCCCEEEEe-cCcc--eEEEEecchheeeeeeeechhe-eeeEEEEeccCcEEEEe
Confidence 78889876543 3333 4555566555433 233311 12335677777766653
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.013 Score=54.91 Aligned_cols=129 Identities=14% Similarity=0.169 Sum_probs=65.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHH-hCC--cEEEEEcCCCCCCCchhhhhcCCC-CCC
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVG--YSLLIVNYRGSLGFGEEALQSLPG-KVG 537 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la-~~G--~~vi~~d~rG~~~~g~~~~~~~~~-~~~ 537 (715)
|.+++-..+.|--.......|.|+++.|.|+.. ..|...+..|- ..+ ..+..+-.-|...-..+-.+.... +-.
T Consensus 10 gl~~si~~~~~~v~~~~~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~e 87 (301)
T KOG3975|consen 10 GLPTSILTLKPWVTKSGEDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEE 87 (301)
T ss_pred CCcccceeeeeeeccCCCCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCccccccccccccc
Confidence 344444444443223457789999999987663 23444444332 222 335555443321111000000000 001
Q ss_pred ccchh-hHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC--ceeEEEecCC
Q 005093 538 SQDVN-DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 593 (715)
Q Consensus 538 ~~~~~-d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~~ 593 (715)
....+ .+..-++++.+.- ....||.++|||-|+++.+.++..... .+..+++.-|
T Consensus 88 ifsL~~QV~HKlaFik~~~-Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP 145 (301)
T KOG3975|consen 88 IFSLQDQVDHKLAFIKEYV-PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP 145 (301)
T ss_pred ccchhhHHHHHHHHHHHhC-CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence 11233 3344566665542 345799999999999999998864332 2344444444
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.035 Score=54.75 Aligned_cols=213 Identities=14% Similarity=0.074 Sum_probs=115.0
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecC-cccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGS 92 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 92 (715)
-..++++|..++.. ..+++..+ .-.+ ...-.|||||++|+-+.+.-.....+.-+| .....+++-+.+ .++
T Consensus 27 G~~~~v~D~~~g~~-~~~~~a~~-gRHF--yGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI--- 99 (305)
T PF07433_consen 27 GTFALVFDCRTGQL-LQRLWAPP-GRHF--YGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI--- 99 (305)
T ss_pred CcEEEEEEcCCCce-eeEEcCCC-CCEE--ecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCc---
Confidence 34556666655442 22332222 1111 346799999998855544333445566666 333444443332 222
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 172 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 172 (715)
....+.|.|||+.|+..--.-... + ..+. .+...+...++|..+|..+|
T Consensus 100 -----GPHel~l~pDG~tLvVANGGI~Th-p-------d~GR------------------~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 100 -----GPHELLLMPDGETLVVANGGIETH-P-------DSGR------------------AKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred -----ChhhEEEcCCCCEEEEEcCCCccC-c-------ccCc------------------eecChhhcCCceEEEecCCC
Confidence 114888999999887752110000 0 0000 01112234588999999999
Q ss_pred ceE-e--ecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCC
Q 005093 173 EVQ-A--VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 249 (715)
Q Consensus 173 ~~~-~--l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (715)
++. + +.......++..+++++||. ++|.....++.. ....=|...+ .
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~-----V~~a~Q~qg~~~-------~~~PLva~~~------------------~ 198 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDGDGT-----VAFAMQYQGDPG-------DAPPLVALHR------------------R 198 (305)
T ss_pred ceeeeeecCccccccceeeEEecCCCc-----EEEEEecCCCCC-------ccCCeEEEEc------------------C
Confidence 854 3 21112344788999999997 555543332211 1112233443 2
Q ss_pred CCCceecCC-------CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 250 DLPVVNLTE-------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 250 ~~~~~~lt~-------~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
++..+.+.- -.+++.++++++||..++.++.+. ..+.++|..++..
T Consensus 199 g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG----------g~~~~~d~~tg~~ 251 (305)
T PF07433_consen 199 GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG----------GRVAVWDAATGRL 251 (305)
T ss_pred CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC----------CEEEEEECCCCCE
Confidence 333333322 234689999999999999888773 2466778777664
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0012 Score=71.02 Aligned_cols=131 Identities=16% Similarity=0.167 Sum_probs=76.8
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch-------------H---HHHHHHhCCcEEEEEcCC-CCCCC
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-------------K---SLAFLSSVGYSLLIVNYR-GSLGF 524 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~-------------~---~~~~la~~G~~vi~~d~r-G~~~~ 524 (715)
+..+.-|++...+ .....|+||+++|||+........ . ..-.+.+. ..++.+|.+ |. |+
T Consensus 60 ~~~lFyw~~~s~~--~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~G~-G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRN--GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPAGV-GF 135 (462)
T ss_pred CceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCCCc-Cc
Confidence 4567777777653 456789999999998764321000 0 00012222 467777864 52 23
Q ss_pred chhhhhcCCCCCCccchhhHHHHHHHHHHc-CCCCCceEEEEEeChhHHHHHHHHhhC----------CCceeEEEecCC
Q 005093 525 GEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQA----------PDKFVAAAARNP 593 (715)
Q Consensus 525 g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~----------p~~~~~~v~~~~ 593 (715)
+....... ........+|+.+++..+.++ +.....++.|+|+||||..+..+|.+- .-.++++++..|
T Consensus 136 S~~~~~~~-~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 136 SYADKADY-DHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred ccCCCCCC-CCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 32211100 111122356777777655543 334568999999999999887776542 114789999888
Q ss_pred cchh
Q 005093 594 LCNL 597 (715)
Q Consensus 594 ~~~~ 597 (715)
+.+.
T Consensus 215 ~~dp 218 (462)
T PTZ00472 215 LTDP 218 (462)
T ss_pred ccCh
Confidence 7764
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.062 Score=56.61 Aligned_cols=187 Identities=12% Similarity=0.053 Sum_probs=111.9
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..+.++|.++.....- .........++++||++. ++... .. +....++.+|-
T Consensus 96 ~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~----vYV~n-~~-----------~~~~~vsvid~---------- 147 (381)
T COG3391 96 NTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKY----VYVAN-AG-----------NGNNTVSVIDA---------- 147 (381)
T ss_pred CeEEEEcCcccceeeE--eeeccCCceEEECCCCCE----EEEEe-cc-----------cCCceEEEEeC----------
Confidence 6688888666554433 222335668899999997 55543 21 02357888885
Q ss_pred hhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceec
Q 005093 242 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 321 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~ 321 (715)
+++...............+++|+|++++-+...+ ..|.++|.++....+ .... ..+
T Consensus 148 -------~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~----------~~v~vi~~~~~~v~~-~~~~-~~~----- 203 (381)
T COG3391 148 -------ATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDD----------NTVSVIDTSGNSVVR-GSVG-SLV----- 203 (381)
T ss_pred -------CCCeEEEEEecCCCcceEEECCCCCeEEEEecCC----------CeEEEEeCCCcceec-cccc-ccc-----
Confidence 4444433321111237789999999886665332 358888866544322 1100 000
Q ss_pred CCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeEEEeecCCEEEEEEeCCC
Q 005093 322 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSSPV 399 (715)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~~~~~l~~~~~~~~ 399 (715)
..+ .......+++||+.+|..-.......+..+|..++.........+ ......++++|..++.....
T Consensus 204 ---~~~-----~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~-- 273 (381)
T COG3391 204 ---GVG-----TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ-- 273 (381)
T ss_pred ---ccC-----CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC--
Confidence 000 134567789999988776655545789999999988887622222 12235678888877766544
Q ss_pred CCCeEEEEeecc
Q 005093 400 DVPQVKYGYFVD 411 (715)
Q Consensus 400 ~p~~l~~~~~~~ 411 (715)
...++.++..+
T Consensus 274 -~~~V~vid~~~ 284 (381)
T COG3391 274 -GGTVSVIDGAT 284 (381)
T ss_pred -CCeEEEEeCCC
Confidence 56677777543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00095 Score=66.22 Aligned_cols=261 Identities=11% Similarity=0.024 Sum_probs=132.0
Q ss_pred cccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCcccc
Q 005093 11 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVH 90 (715)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (715)
+......|.++++..+..+.. +.+....|.+....+-++++++.-..++ ...++|.+........++- ..
T Consensus 192 tgg~Dr~Ik~W~v~~~k~~~~----~tLaGs~g~it~~d~d~~~~~~iAas~d--~~~r~Wnvd~~r~~~TLsG----Ht 261 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGEKSELI----STLAGSLGNITSIDFDSDNKHVIAASND--KNLRLWNVDSLRLRHTLSG----HT 261 (459)
T ss_pred hcchhhhhhhhhcccchhhhh----hhhhccCCCcceeeecCCCceEEeecCC--Cceeeeeccchhhhhhhcc----cc
Confidence 334444455555655542111 2233344778999999999887644333 4455666543222222221 11
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
++| ....|.-+...+.-.+.+... +.|.+......+. ....+.-+++...+. .-..+.-...|..||..
T Consensus 262 dkV------t~ak~~~~~~~vVsgs~DRti--K~WDl~k~~C~kt-~l~~S~cnDI~~~~~--~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 262 DKV------TAAKFKLSHSRVVSGSADRTI--KLWDLQKAYCSKT-VLPGSQCNDIVCSIS--DVISGHFDKKVRFWDIR 330 (459)
T ss_pred cce------eeehhhccccceeeccccchh--hhhhhhhhheecc-ccccccccceEecce--eeeecccccceEEEecc
Confidence 222 455565555442222222211 1222211100000 000111111111000 00111123458999987
Q ss_pred CCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC
Q 005093 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 250 (715)
Q Consensus 171 ~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (715)
++..+.. .+....+.++..++||.. |+.++ ++..+-++|+ .+
T Consensus 331 s~~~~~s--v~~gg~vtSl~ls~~g~~----lLsss---------------RDdtl~viDl-----------------Rt 372 (459)
T KOG0288|consen 331 SADKTRS--VPLGGRVTSLDLSMDGLE----LLSSS---------------RDDTLKVIDL-----------------RT 372 (459)
T ss_pred CCceeeE--eecCcceeeEeeccCCeE----Eeeec---------------CCCceeeeec-----------------cc
Confidence 7766555 355557889999999999 77664 3335667776 55
Q ss_pred CCceecCCCCc-----cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC-CcccceeeeeeceecCCC
Q 005093 251 LPVVNLTESIS-----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEG 324 (715)
Q Consensus 251 ~~~~~lt~~~~-----~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~ 324 (715)
.+++....-.+ ......|||||.+++-.+.+ ..||++++.+++.. .+.....
T Consensus 373 ~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d-----------gsv~iW~v~tgKlE~~l~~s~s----------- 430 (459)
T KOG0288|consen 373 KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD-----------GSVYIWSVFTGKLEKVLSLSTS----------- 430 (459)
T ss_pred ccEEEEeeccccccccccceeEECCCCceeeeccCC-----------CcEEEEEccCceEEEEeccCCC-----------
Confidence 55554433222 24668999999999865555 35999999887652 2211110
Q ss_pred CCccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 325 DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 325 ~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
.+ .+..+.|.+.|+.++- ...+....||
T Consensus 431 --~~-----aI~s~~W~~sG~~Lls-adk~~~v~lW 458 (459)
T KOG0288|consen 431 --NA-----AITSLSWNPSGSGLLS-ADKQKAVTLW 458 (459)
T ss_pred --Cc-----ceEEEEEcCCCchhhc-ccCCcceEec
Confidence 00 2456779888876543 3333334444
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.001 Score=64.89 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=65.7
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHH-HHHHHHcCCCCCce
Q 005093 483 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPSK 561 (715)
Q Consensus 483 ~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~-i~~l~~~~~~d~~~ 561 (715)
.|+++|++++. ...|..+++.+...++.|+.++++|... . ......++++++. ++.+.+.. ...+
T Consensus 2 ~lf~~p~~gG~--~~~y~~la~~l~~~~~~v~~i~~~~~~~---~-------~~~~~si~~la~~y~~~I~~~~--~~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGGS--ASSYRPLARALPDDVIGVYGIEYPGRGD---D-------EPPPDSIEELASRYAEAIRARQ--PEGP 67 (229)
T ss_dssp EEEEESSTTCS--GGGGHHHHHHHTTTEEEEEEECSTTSCT---T-------SHEESSHHHHHHHHHHHHHHHT--SSSS
T ss_pred eEEEEcCCccC--HHHHHHHHHhCCCCeEEEEEEecCCCCC---C-------CCCCCCHHHHHHHHHHHhhhhC--CCCC
Confidence 58899997664 5678888888866578999999998431 0 1112235555543 34444432 2348
Q ss_pred EEEEEeChhHHHHHHHHhhC---CCceeEEEecCCc
Q 005093 562 VTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPL 594 (715)
Q Consensus 562 i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~ 594 (715)
+.|+|||+||.+|..+|.+. ...+..++++.+.
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~ 103 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSP 103 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCS
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEecCC
Confidence 99999999999999888643 3457777777743
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.054 Score=54.58 Aligned_cols=124 Identities=13% Similarity=0.087 Sum_probs=80.3
Q ss_pred CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCcc
Q 005093 183 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISS 262 (715)
Q Consensus 183 ~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~ 262 (715)
+......+|.||| ++|.... .++.|-.+|+. ......+...+.+.
T Consensus 347 ~v~~ts~~fHpDg------Lifgtgt-------------~d~~vkiwdlk----------------s~~~~a~Fpght~~ 391 (506)
T KOG0289|consen 347 DVEYTSAAFHPDG------LIFGTGT-------------PDGVVKIWDLK----------------SQTNVAKFPGHTGP 391 (506)
T ss_pred cceeEEeeEcCCc------eEEeccC-------------CCceEEEEEcC----------------CccccccCCCCCCc
Confidence 3567788999999 5565522 22356666761 33355566667778
Q ss_pred ccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC-CCcccceeeeeeceecCCCCCccccccCCCCCCccc
Q 005093 263 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 341 (715)
+..+.||.+|=+|+...++. .+..+||..-+. +.++... +. .+..+.|.
T Consensus 392 vk~i~FsENGY~Lat~add~-----------~V~lwDLRKl~n~kt~~l~~--------------~~-----~v~s~~fD 441 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDG-----------SVKLWDLRKLKNFKTIQLDE--------------KK-----EVNSLSFD 441 (506)
T ss_pred eeEEEeccCceEEEEEecCC-----------eEEEEEehhhcccceeeccc--------------cc-----cceeEEEc
Confidence 99999999999999887663 277888865432 1111110 00 24566788
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 005093 342 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 342 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
..|+++... +....+|..+-.++..+.+..
T Consensus 442 ~SGt~L~~~---g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 442 QSGTYLGIA---GSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred CCCCeEEee---cceeEEEEEecccccceeeeh
Confidence 888866554 445678888877777776643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.002 Score=65.44 Aligned_cols=171 Identities=11% Similarity=0.046 Sum_probs=104.6
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (715)
+-+.+-++|++......+ ..++..--...+.+.|||.+ |+|..-.+ ++-.+|.+.+....+++--.+.+.
T Consensus 485 eastlsiWDLAapTprik----aeltssapaCyALa~spDak-vcFsccsd-GnI~vwDLhnq~~VrqfqGhtDGa---- 554 (705)
T KOG0639|consen 485 EASTLSIWDLAAPTPRIK----AELTSSAPACYALAISPDAK-VCFSCCSD-GNIAVWDLHNQTLVRQFQGHTDGA---- 554 (705)
T ss_pred ccceeeeeeccCCCcchh----hhcCCcchhhhhhhcCCccc-eeeeeccC-CcEEEEEcccceeeecccCCCCCc----
Confidence 344555555766654332 12222113467788999986 66665443 332333332222222222223344
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 173 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 173 (715)
+.+..|+||.+|.-.. -.+.|.-||+..|.
T Consensus 555 ------scIdis~dGtklWTGG--------------------------------------------lDntvRcWDlregr 584 (705)
T KOG0639|consen 555 ------SCIDISKDGTKLWTGG--------------------------------------------LDNTVRCWDLREGR 584 (705)
T ss_pred ------eeEEecCCCceeecCC--------------------------------------------Cccceeehhhhhhh
Confidence 7899999999987631 23678889997765
Q ss_pred eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc
Q 005093 174 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 253 (715)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (715)
..+- ......+.++...|.|.. ++.-- .+++++++.. .+.+.
T Consensus 585 qlqq--hdF~SQIfSLg~cP~~dW----lavGM---------------ens~vevlh~-----------------skp~k 626 (705)
T KOG0639|consen 585 QLQQ--HDFSSQIFSLGYCPTGDW----LAVGM---------------ENSNVEVLHT-----------------SKPEK 626 (705)
T ss_pred hhhh--hhhhhhheecccCCCccc----eeeec---------------ccCcEEEEec-----------------CCccc
Confidence 4332 233345667778899998 76543 3357888875 45556
Q ss_pred eecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 254 VNLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 254 ~~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
-+|.-.+.-+-+..|++-|++++-+..++
T Consensus 627 yqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 627 YQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred eeecccccEEEEEEecccCceeeecCchh
Confidence 67887788889999999999987666553
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.042 Score=64.15 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=52.0
Q ss_pred CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 161 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
+..|.+|+.+ |++.... .+.+.-...++|.|.|.. |+-+....+ ..+|..+.- ++
T Consensus 236 ~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~l----IA~~q~~~~------------~~~VvFfEr-------NG 290 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGNL----IASSQRLPD------------RHDVVFFER-------NG 290 (928)
T ss_pred eeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCCE----EEEEEEcCC------------CcEEEEEec-------CC
Confidence 4778899987 6655541 122234557899999997 777763111 124555542 01
Q ss_pred hhhhccCCCCCCcee-cCCCCccccceeEcCCCCeEEEEec
Q 005093 241 LELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~-lt~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
| ..|+..- +......+....|++|+.-||..-.
T Consensus 291 L-------rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 291 L-------RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred c-------EeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 1 2222211 1233445788999999999987653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.003 Score=60.54 Aligned_cols=241 Identities=12% Similarity=0.074 Sum_probs=140.6
Q ss_pred cccccceEEEEEEEeecCCCCccccccCC---CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEe-
Q 005093 9 LLANKRKKFMLSTVISKENENSVTFQWAP---FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFH- 84 (715)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~- 84 (715)
+.....+..|-+++..++. -.+.|.+.. |---...+....||.|...||--+.. ++-.+|.+ .+|+-.+.++
T Consensus 228 LvsgSvDGFiEVWny~~GK-lrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD--GkIKvWri-~tG~ClRrFdr 303 (508)
T KOG0275|consen 228 LVSGSVDGFIEVWNYTTGK-LRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD--GKIKVWRI-ETGQCLRRFDR 303 (508)
T ss_pred Eeeccccceeeeehhccch-hhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC--CcEEEEEE-ecchHHHHhhh
Confidence 3344455666666555443 123332222 21112346778899999888855443 33334444 3444333332
Q ss_pred -cCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCce
Q 005093 85 -VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS 163 (715)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 163 (715)
.+.++ ..++||.|+..|+-.+.+ ..
T Consensus 304 AHtkGv----------t~l~FSrD~SqiLS~sfD--------------------------------------------~t 329 (508)
T KOG0275|consen 304 AHTKGV----------TCLSFSRDNSQILSASFD--------------------------------------------QT 329 (508)
T ss_pred hhccCe----------eEEEEccCcchhhccccc--------------------------------------------ce
Confidence 24455 799999999988764322 55
Q ss_pred EEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhh
Q 005093 164 LFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELEL 243 (715)
Q Consensus 164 l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 243 (715)
+.+..+++|+...-. -.....+..+.|++||.. |+..+. ++.+-+++.
T Consensus 330 vRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~----iisaSs---------------DgtvkvW~~------------ 377 (508)
T KOG0275|consen 330 VRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHH----IISASS---------------DGTVKVWHG------------ 377 (508)
T ss_pred EEEeccccchhHHHh-cCccccccceEEcCCCCe----EEEecC---------------CccEEEecC------------
Confidence 677778887754331 112235678899999998 887651 223445553
Q ss_pred hccCCCCCCceecCC---CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 244 KESSSEDLPVVNLTE---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 244 ~~~~~~~~~~~~lt~---~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
.+.+...-.. .+..+.++..-|.+..-+.+.++. ..+|++++++.-.+.++.+..+
T Consensus 378 -----KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs----------ntv~imn~qGQvVrsfsSGkRE------ 436 (508)
T KOG0275|consen 378 -----KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS----------NTVYIMNMQGQVVRSFSSGKRE------ 436 (508)
T ss_pred -----cchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC----------CeEEEEeccceEEeeeccCCcc------
Confidence 3333322222 233456666667665555566664 3599999988666666554422
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
.++| -....+|.|..+|.... ...||.++..+|+.++...
T Consensus 437 ---gGdF--------i~~~lSpkGewiYcigE---D~vlYCF~~~sG~LE~tl~ 476 (508)
T KOG0275|consen 437 ---GGDF--------INAILSPKGEWIYCIGE---DGVLYCFSVLSGKLERTLP 476 (508)
T ss_pred ---CCce--------EEEEecCCCcEEEEEcc---CcEEEEEEeecCceeeeee
Confidence 1122 23457899998888755 3579999988888877554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.019 Score=57.70 Aligned_cols=78 Identities=17% Similarity=0.097 Sum_probs=46.2
Q ss_pred ccceeEcCCCCeEEEEecC---CCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCc
Q 005093 263 AFFPRFSPDGKFLVFLSAK---SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 339 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~~~---~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 339 (715)
..+....|||. ++|.... ... ........||+++..++..+.+.... ...+.++
T Consensus 113 ~ND~~v~pdG~-~wfgt~~~~~~~~--~~~~~~G~lyr~~p~g~~~~l~~~~~--------------------~~~NGla 169 (307)
T COG3386 113 PNDGVVDPDGR-IWFGDMGYFDLGK--SEERPTGSLYRVDPDGGVVRLLDDDL--------------------TIPNGLA 169 (307)
T ss_pred CCceeEcCCCC-EEEeCCCccccCc--cccCCcceEEEEcCCCCEEEeecCcE--------------------EecCceE
Confidence 45678899987 7777665 111 11122237999986443332222111 0246889
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECC
Q 005093 340 WLSDGCTMLLSSIWGSSQVIISVNVS 365 (715)
Q Consensus 340 ~~~dg~~l~~~~~~~~~~~l~~~d~~ 365 (715)
||||++.+|++-+. ..+|++++.+
T Consensus 170 ~SpDg~tly~aDT~--~~~i~r~~~d 193 (307)
T COG3386 170 FSPDGKTLYVADTP--ANRIHRYDLD 193 (307)
T ss_pred ECCCCCEEEEEeCC--CCeEEEEecC
Confidence 99999988876543 3577777664
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.016 Score=57.12 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=92.0
Q ss_pred ceEEEEEccCCceEe-ecCC-CCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 162 PSLFVININSGEVQA-VKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~-l~~~-~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
.+||++|+++-++.. +..+ +.......++.++.+.. ++|-... ..++|+++|+
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y----lAyp~s~-------------t~GdV~l~d~-------- 160 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY----LAYPGST-------------TSGDVVLFDT-------- 160 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCce----EEecCCC-------------CCceEEEEEc--------
Confidence 459999998766432 2112 22223334444445556 8887522 2358999987
Q ss_pred hhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 240 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 240 ~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
..-.....+..+++.....+|||||..||-++.+.+ -|.++..+.|+.. .+-
T Consensus 161 --------~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGT----------VIRVf~v~~G~kl--~eF-------- 212 (391)
T KOG2110|consen 161 --------INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGT----------VIRVFSVPEGQKL--YEF-------- 212 (391)
T ss_pred --------ccceeeeEEEecCCceeEEEECCCCCEEEEeccCce----------EEEEEEcCCccEe--eee--------
Confidence 244555666778888999999999999998887742 3556666665431 100
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 366 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~t 366 (715)
-.|.+..++..++|++|+..| ..+...+..++++++...
T Consensus 213 -------RRG~~~~~IySL~Fs~ds~~L-~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 213 -------RRGTYPVSIYSLSFSPDSQFL-AASSNTETVHIFKLEKVS 251 (391)
T ss_pred -------eCCceeeEEEEEEECCCCCeE-EEecCCCeEEEEEecccc
Confidence 122334466788999999844 445557778899888543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.011 Score=63.29 Aligned_cols=169 Identities=11% Similarity=0.094 Sum_probs=103.1
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe----cCCccEEE-------
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW----SQSQLEKE------- 82 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~----~~~~~~~~------- 82 (715)
....|.++|++...- + ....++.+.+...+.|||++..+-.+.+ ....+|.+- ..|..+++
T Consensus 432 k~Gel~vfdlaS~~l----~--Eti~AHdgaIWsi~~~pD~~g~vT~saD--ktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 432 KNGELQVFDLASASL----V--ETIRAHDGAIWSISLSPDNKGFVTGSAD--KTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred cCCceEEEEeehhhh----h--hhhhccccceeeeeecCCCCceEEecCC--cEEEEEeEEEEeccCcccceeeeeccce
Confidence 334455555654432 1 1222455778999999999988755433 222233322 12333332
Q ss_pred -EecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccC
Q 005093 83 -FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQ 161 (715)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 161 (715)
.+++..+ ..++.||||++|+..--+
T Consensus 504 tLel~ddv----------L~v~~Spdgk~LaVsLLd-------------------------------------------- 529 (888)
T KOG0306|consen 504 TLELEDDV----------LCVSVSPDGKLLAVSLLD-------------------------------------------- 529 (888)
T ss_pred EEeccccE----------EEEEEcCCCcEEEEEecc--------------------------------------------
Confidence 2233333 689999999999986332
Q ss_pred ceEEEEEccCCceE-eecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 162 PSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 162 ~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
+.+.++=+++=+.. .| -....++..+..|||++. |+..+ ..++..||=+|+
T Consensus 530 nTVkVyflDtlKFflsL--YGHkLPV~smDIS~DSkl----ivTgS-------------ADKnVKiWGLdF--------- 581 (888)
T KOG0306|consen 530 NTVKVYFLDTLKFFLSL--YGHKLPVLSMDISPDSKL----IVTGS-------------ADKNVKIWGLDF--------- 581 (888)
T ss_pred CeEEEEEecceeeeeee--cccccceeEEeccCCcCe----EEecc-------------CCCceEEecccc---------
Confidence 33444444444432 33 233457788999999997 77654 224557898886
Q ss_pred hhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 241 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
+.=.+.+..++.++..+.|-|+ .+++|++.++
T Consensus 582 ---------GDCHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD 613 (888)
T KOG0306|consen 582 ---------GDCHKSFFAHDDSVMSVQFLPK-THLFFTCGKD 613 (888)
T ss_pred ---------chhhhhhhcccCceeEEEEccc-ceeEEEecCc
Confidence 3334567777788889999995 5688888775
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.037 Score=56.00 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=93.3
Q ss_pred ceEEEEEccCC--ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 162 PSLFVININSG--EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 162 ~~l~~~~~~~g--~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
..|.+||..++ +.+... ...+..+..++|+|=+.. |+-++.. +..|.++|+
T Consensus 250 ~~L~iwD~R~~~~~~~~~~-~ah~~~vn~~~fnp~~~~----ilAT~S~--------------D~tV~LwDl-------- 302 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSV-KAHSAEVNCVAFNPFNEF----ILATGSA--------------DKTVALWDL-------- 302 (422)
T ss_pred CeEEEEEcCCCCCCCcccc-cccCCceeEEEeCCCCCc----eEEeccC--------------CCcEEEeec--------
Confidence 67999999853 222220 122345778899998877 7666532 236777776
Q ss_pred hhhhhccCCC-CCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccc-eeeeee
Q 005093 240 ELELKESSSE-DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK-IVDVIP 317 (715)
Q Consensus 240 ~~~~~~~~~~-~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~-~~~~~~ 317 (715)
++ ......+..+...+..+.|||.-..++-.+..+ ..|.++|+..-+..+.... .+..-.
T Consensus 303 --------RnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D----------~rl~vWDls~ig~eq~~eda~dgppE 364 (422)
T KOG0264|consen 303 --------RNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD----------RRLNVWDLSRIGEEQSPEDAEDGPPE 364 (422)
T ss_pred --------hhcccCceeccCCCcceEEEEeCCCCCceeEecccC----------CcEEEEeccccccccChhhhccCCcc
Confidence 12 235556666777889999999998886555432 3578888866443322111 111100
Q ss_pred ceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 005093 318 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 318 ~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d 363 (715)
++ -.-|.+...+..+.|.|+.-.++.+..++..-+||.+.
T Consensus 365 ll------F~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 365 LL------FIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ee------EEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 00 00122444677899999998888888887777777654
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00045 Score=70.49 Aligned_cols=125 Identities=24% Similarity=0.237 Sum_probs=80.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-HHHHHH-hCCcEEEEEcCCCCCCCchhh---hhcCCCCCCcc
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS-SVGYSLLIVNYRGSLGFGEEA---LQSLPGKVGSQ 539 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~-~~~~la-~~G~~vi~~d~rG~~~~g~~~---~~~~~~~~~~~ 539 (715)
|...++.|. . ...+.-++|+|+||++..+.....- ....|+ ....+|+.++||-+ .+|--+ ....++++|
T Consensus 121 LYlNVW~P~-~-~p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaPGNmG-- 195 (601)
T KOG4389|consen 121 LYLNVWAPA-A-DPYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAPGNMG-- 195 (601)
T ss_pred eEEEEeccC-C-CCCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeec-cceEEecCCCCCCCCccc--
Confidence 344567774 1 2233348999999988776654432 233454 44567888999942 244322 223344544
Q ss_pred chhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhCC---CceeEEEecCCcch
Q 005093 540 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 596 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~~ 596 (715)
+-|..-|+.|+.++ ..-|+++|.|+|.|+|+..+..-+. .| .+|+.+|+.++..+
T Consensus 196 -l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLl-sP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 196 -LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLL-SPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred -hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheec-CCCchhhHHHHHhhcCCCC
Confidence 67888889998886 2368999999999999986654433 23 36888888777543
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0016 Score=62.99 Aligned_cols=112 Identities=9% Similarity=0.164 Sum_probs=63.8
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCc--EEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~--~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
....++||+||..... .......++.....|+ .++.+..+..+.. ..+. ............+.+.+..|.+.
T Consensus 16 ~~~~vlvfVHGyn~~f-~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~--~d~~~a~~s~~~l~~~L~~L~~~-- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSF-EDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYF--YDRESARFSGPALARFLRDLARA-- 89 (233)
T ss_pred CCCeEEEEEeCCCCCH-HHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhh--hhhhhHHHHHHHHHHHHHHHHhc--
Confidence 4678999999943321 1122233343344444 7888988863321 1110 00111112244555666666555
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhC----C-----CceeEEEecCCcch
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQA----P-----DKFVAAAARNPLCN 596 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~----p-----~~~~~~v~~~~~~~ 596 (715)
....+|.|++||||+.+.+.++... + .+|..+++.+|-++
T Consensus 90 ~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 90 PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 2468999999999999998876432 1 25667777777554
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.027 Score=60.55 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=105.2
Q ss_pred CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 161 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
...|-++|+........+ ...+..+..++.+||++. .+..+.... ..+|.+.+.
T Consensus 433 ~Gel~vfdlaS~~l~Eti-~AHdgaIWsi~~~pD~~g----~vT~saDkt-------------VkfWdf~l~-------- 486 (888)
T KOG0306|consen 433 NGELQVFDLASASLVETI-RAHDGAIWSISLSPDNKG----FVTGSADKT-------------VKFWDFKLV-------- 486 (888)
T ss_pred CCceEEEEeehhhhhhhh-hccccceeeeeecCCCCc----eEEecCCcE-------------EEEEeEEEE--------
Confidence 356888888877654332 233456778889999999 776552111 123333220
Q ss_pred hhhhccCCCCCCc-eec-------CCCCccccceeEcCCCCeEEEEecCCCCCCCCc----------cccceeEeeecCC
Q 005093 241 LELKESSSEDLPV-VNL-------TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH----------SATDSLHRIDWPT 302 (715)
Q Consensus 241 ~~~~~~~~~~~~~-~~l-------t~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~----------~~~~~l~~~~~~~ 302 (715)
.+ ..|+. +.| -.-+..+-..++||||+.|+..--+.+...... ....-+.-+|++-
T Consensus 487 ----~~--~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~ 560 (888)
T KOG0306|consen 487 ----VS--VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP 560 (888)
T ss_pred ----ec--cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence 00 11221 111 111234677899999999986554433210000 0011234566666
Q ss_pred CCCCCcccceeeeeeceecCCCCCcccc--ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC-CcEEEecCCCCCc
Q 005093 303 NGNFSSLEKIVDVIPVVQCAEGDCFPGL--YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS-GELLRITPAESNF 379 (715)
Q Consensus 303 ~~~~~lt~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~t-g~~~~l~~~~~~~ 379 (715)
.....+|.+.|.-+.+|-.+-.++.... ++.++..+.|.|+. .++|+....+ .+-.||-+. ...+.+......+
T Consensus 561 DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~--kvKqWDg~kFe~iq~L~~H~~ev 637 (888)
T KOG0306|consen 561 DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDG--KVKQWDGEKFEEIQKLDGHHSEV 637 (888)
T ss_pred CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc-eeEEEecCcc--eEEeechhhhhhheeeccchhee
Confidence 6666778777777777766655544433 34567778888864 5778776544 444455332 1223333333333
Q ss_pred eeEEEeecCCEEE
Q 005093 380 SWSLLTLDGDNII 392 (715)
Q Consensus 380 ~~~~~s~~~~~l~ 392 (715)
.-.+.+++|+.++
T Consensus 638 ~cLav~~~G~~vv 650 (888)
T KOG0306|consen 638 WCLAVSPNGSFVV 650 (888)
T ss_pred eeeEEcCCCCeEE
Confidence 3335566665443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0039 Score=61.89 Aligned_cols=241 Identities=11% Similarity=0.067 Sum_probs=131.6
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEec-CCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
..++...||+||.+++-.. ...+..+|. .-...+..+-.. .+.+..++|||...+++-.+++....
T Consensus 139 s~Vr~m~ws~~g~wmiSgD-----~gG~iKyWqpnmnnVk~~~ahh--------~eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGD-----KGGMIKYWQPNMNNVKIIQAHH--------AEAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred ccceeEEEccCCCEEEEcC-----CCceEEecccchhhhHHhhHhh--------hhhhheeccCCCCceeEEecCCCeEE
Confidence 4478899999999987432 224667773 222222222111 01237899999877777766665443
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEe-ecCCCCCCccceEEEecCCCCCcc
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
...+.. ...........-......|-|.-|....+.+.+-|-+||..+|.-.. + ......+..+.|+|+|..
T Consensus 206 iWdf~~--~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl--h~HKntVl~~~f~~n~N~--- 278 (464)
T KOG0284|consen 206 IWDFRM--PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL--HGHKNTVLAVKFNPNGNW--- 278 (464)
T ss_pred EEeccC--CchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh--hhccceEEEEEEcCCCCe---
Confidence 322211 11111111111111233444443555555566789999998886322 2 222335778999999976
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEec
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
|+..+ +++.+-++|+ +.-.+....-.+...+....|+|=..-|+-+..
T Consensus 279 -Llt~s---------------kD~~~kv~Di----------------R~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 279 -LLTGS---------------KDQSCKVFDI----------------RTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred -eEEcc---------------CCceEEEEeh----------------hHhHHHHHhhcchhhheeeccccccccceeecc
Confidence 66554 3445667776 112344445555667888999998777744433
Q ss_pred CCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
-+ .+|.-+.+...+..... +-.++..+.++.|.|=|. |+.+.+.+...+.|
T Consensus 327 ~D----------gsvvh~~v~~~~p~~~i------------------~~AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw 377 (464)
T KOG0284|consen 327 SD----------GSVVHWVVGLEEPLGEI------------------PPAHDGEIWSLAYHPLGH-ILATGSNDRTVRFW 377 (464)
T ss_pred CC----------CceEEEeccccccccCC------------------Ccccccceeeeeccccce-eEeecCCCcceeee
Confidence 22 13444444422221111 111333566788999986 77776655555666
Q ss_pred EEEC
Q 005093 361 SVNV 364 (715)
Q Consensus 361 ~~d~ 364 (715)
.-+.
T Consensus 378 ~r~r 381 (464)
T KOG0284|consen 378 TRNR 381 (464)
T ss_pred ccCC
Confidence 5443
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0038 Score=59.13 Aligned_cols=192 Identities=16% Similarity=0.137 Sum_probs=101.9
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCc--cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhH
Q 005093 467 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 544 (715)
Q Consensus 467 ~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~--~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~ 544 (715)
.|+..|+ ++. .||.+-||.+....+ .|..+.+.|+++||.|++.-|.-+-.|..-. .......
T Consensus 8 ~wvl~P~-----~P~-gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~~A---------~~~~~~f 72 (250)
T PF07082_consen 8 SWVLIPP-----RPK-GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQAIA---------REVWERF 72 (250)
T ss_pred cEEEeCC-----CCC-EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHHHH---------HHHHHHH
Confidence 4677775 233 455555655543333 6778899999999999999987532221111 0113344
Q ss_pred HHHHHHHHHcCCCCC--ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCC
Q 005093 545 LTAIDHVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 622 (715)
Q Consensus 545 ~~~i~~l~~~~~~d~--~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (715)
..+++.|.++...+. -+++-+|||+|+-+-+.+....+..-++-++++- -+.. ....++. .+.+.......
T Consensus 73 ~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSF-NN~~---a~~aIP~---~~~l~~~l~~E 145 (250)
T PF07082_consen 73 ERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISF-NNFP---ADEAIPL---LEQLAPALRLE 145 (250)
T ss_pred HHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEec-CChH---HHhhCch---HhhhccccccC
Confidence 556666666543333 3688899999999988877655433344444331 1100 0000110 01111100111
Q ss_pred CCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCC-cEEEEEeCCCCcc
Q 005093 623 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHG 692 (715)
Q Consensus 623 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~ 692 (715)
+ .|..++...+.+.+ + .....|++.=.+|.+ +++..+.+.|+++.. .++....+| .|-
T Consensus 146 F--~PsP~ET~~li~~~---Y---~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 146 F--TPSPEETRRLIRES---Y---QVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred c--cCCHHHHHHHHHHh---c---CCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 1 12223322222211 0 123468888888865 678888888886633 355667764 684
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.23 Score=58.19 Aligned_cols=109 Identities=11% Similarity=0.024 Sum_probs=60.0
Q ss_pred cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccc
Q 005093 262 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341 (715)
Q Consensus 262 ~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 341 (715)
....++|-.||+++|..+-... . .....+.+++-.+ .....++ ..+| -...++|.
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~---~--~~~R~iRVy~ReG-~L~stSE---------------~v~g----Le~~l~Wr 265 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPE---T--GSRRVIRVYSREG-ELQSTSE---------------PVDG----LEGALSWR 265 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcC---C--CceeEEEEECCCc-eEEeccc---------------cCCC----ccCCccCC
Confidence 3456789999999987776431 0 1234566676542 2211111 1111 23578899
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC----CCCceeEEEeecCCEEEEEE
Q 005093 342 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA----ESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 342 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~----~~~~~~~~~s~~~~~l~~~~ 395 (715)
|.|+.|..+....+...+..+...+-+...+... ...+....|+.|+.-|++..
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL 323 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe
Confidence 9999665554444556677676654333333221 22334456777777666554
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.12 Score=49.74 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=66.7
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
..++..+|||.-..++-....+ +...+|.+.+.|....... ....+ ++-...||.||.+++..+-
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD-~tVR~wevq~~g~~~~ka~--~~~~~------PvL~v~WsddgskVf~g~~------ 92 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWD-GTVRIWEVQNSGQLVPKAQ--QSHDG------PVLDVCWSDDGSKVFSGGC------ 92 (347)
T ss_pred cchheeEeccccCceEEecccC-CceEEEEEecCCcccchhh--hccCC------CeEEEEEccCCceEEeecc------
Confidence 5689999999665555555555 7777888875555443211 11111 2268899999977655321
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCC
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~ 196 (715)
..++-+|||.++++.++ ...+..+....|-+-..
T Consensus 93 --------------------------------------Dk~~k~wDL~S~Q~~~v--~~Hd~pvkt~~wv~~~~ 126 (347)
T KOG0647|consen 93 --------------------------------------DKQAKLWDLASGQVSQV--AAHDAPVKTCHWVPGMN 126 (347)
T ss_pred --------------------------------------CCceEEEEccCCCeeee--eecccceeEEEEecCCC
Confidence 25688999999999888 56666777788876554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0068 Score=58.46 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=74.7
Q ss_pred ceEEEEEccCCceEeecC---CCCCC-ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 162 PSLFVININSGEVQAVKG---IPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~---~~~~~-~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
.-|.+||.-+|+.+.-.. ...++ ....+.|||||.. +|.+. ++ -|.++|+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq-----lfaGy-------------kr--cirvFdt~----- 187 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ-----LFAGY-------------KR--CIRVFDTS----- 187 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe-----Eeecc-------------cc--eEEEeecc-----
Confidence 569999999998775420 01111 3447899999997 45541 12 35555541
Q ss_pred hhhhhhhccCCCCCCc----eecCC----CCccccceeEcCCC-CeEEEEecCCCCCCCCccccceeEeeecCCCCCCCc
Q 005093 238 ASELELKESSSEDLPV----VNLTE----SISSAFFPRFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 308 (715)
Q Consensus 238 ~~~~~~~~~~~~~~~~----~~lt~----~~~~~~~~~~spdg-~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~l 308 (715)
..|.- ..++. ..+-+...+|||-. +.+++.+... ...||. ..+.....+
T Consensus 188 -----------RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q---------~~giy~--~~~~~pl~l 245 (406)
T KOG2919|consen 188 -----------RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ---------RVGIYN--DDGRRPLQL 245 (406)
T ss_pred -----------CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccc---------eeeeEe--cCCCCceee
Confidence 22221 12222 12346778888844 4666665442 123443 334443322
Q ss_pred ccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 005093 309 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 365 (715)
Q Consensus 309 t~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~ 365 (715)
..+ +..++..++|.+||+.+|..+. ....|..+|+.
T Consensus 246 lgg-------------------h~gGvThL~~~edGn~lfsGaR--k~dkIl~WDiR 281 (406)
T KOG2919|consen 246 LGG-------------------HGGGVTHLQWCEDGNKLFSGAR--KDDKILCWDIR 281 (406)
T ss_pred ecc-------------------cCCCeeeEEeccCcCeeccccc--CCCeEEEEeeh
Confidence 211 2236778899999997654332 23467778875
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.088 Score=53.11 Aligned_cols=143 Identities=11% Similarity=0.078 Sum_probs=91.4
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCC-ccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
+.+.....-|.|.++...++++ .|.+. ..| ....+.+...++ .++...|+||| |+|....
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~-----~w~Fsd~~~g~~lt~vs~~~s~v--------~~ts~~fHpDg--Lifgtgt-- 366 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDG-----TWAFSDISSGSQLTVVSDETSDV--------EYTSAAFHPDG--LIFGTGT-- 366 (506)
T ss_pred ccceeeeeccCCcEEEEecCCc-----eEEEEEccCCcEEEEEeeccccc--------eeEEeeEcCCc--eEEeccC--
Confidence 5578888899999998776653 56665 333 333333321222 23789999999 5564221
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE-eecCCCCCCccceEEEecCCCCC
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
....|-+||++.+... .. ......+...+||-+|-.
T Consensus 367 ----------------------------------------~d~~vkiwdlks~~~~a~F--pght~~vk~i~FsENGY~- 403 (506)
T KOG0289|consen 367 ----------------------------------------PDGVVKIWDLKSQTNVAKF--PGHTGPVKAISFSENGYW- 403 (506)
T ss_pred ----------------------------------------CCceEEEEEcCCccccccC--CCCCCceeEEEeccCceE-
Confidence 2377999999876532 22 223446778999999987
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCc-cccceeEcCCCCeEEE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-SAFFPRFSPDGKFLVF 277 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-~~~~~~~spdg~~l~~ 277 (715)
++..++ +..+.++|| +.......++.++. .+.+..|.+.|++|+.
T Consensus 404 ---Lat~ad---------------d~~V~lwDL----------------RKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~ 449 (506)
T KOG0289|consen 404 ---LATAAD---------------DGSVKLWDL----------------RKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI 449 (506)
T ss_pred ---EEEEec---------------CCeEEEEEe----------------hhhcccceeeccccccceeEEEcCCCCeEEe
Confidence 777662 124777787 34445555444332 5778999999999976
Q ss_pred Ee
Q 005093 278 LS 279 (715)
Q Consensus 278 ~~ 279 (715)
.+
T Consensus 450 ~g 451 (506)
T KOG0289|consen 450 AG 451 (506)
T ss_pred ec
Confidence 63
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.019 Score=61.57 Aligned_cols=207 Identities=13% Similarity=0.086 Sum_probs=121.2
Q ss_pred EeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCcc
Q 005093 48 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 126 (715)
Q Consensus 48 ~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 126 (715)
.+||++|+.|+-.-.+ .+..++ .+++.. +........ ..+..+..+||++.|+....
T Consensus 25 ~~~s~nG~~L~t~~~d-----~Vi~idv~t~~~~-l~s~~~ed~------d~ita~~l~~d~~~L~~a~r---------- 82 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGD-----RVIIIDVATGSIA-LPSGSNEDE------DEITALALTPDEEVLVTASR---------- 82 (775)
T ss_pred eeECCCCCEEEEecCc-----eEEEEEccCCcee-cccCCccch------hhhheeeecCCccEEEEeec----------
Confidence 8999999998755333 355566 555442 222211111 23479999999988877532
Q ss_pred CCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEe
Q 005093 127 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 206 (715)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~ 206 (715)
...|-+|.+.+|+..+.-......++.-++|.|-| . ++-++
T Consensus 83 ----------------------------------s~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~----LlAtg 123 (775)
T KOG0319|consen 83 ----------------------------------SQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-T----LLATG 123 (775)
T ss_pred ----------------------------------cceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC-c----eEEec
Confidence 25688899999875543112234566678899998 6 66665
Q ss_pred ecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCC
Q 005093 207 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDS 286 (715)
Q Consensus 207 ~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 286 (715)
..+ ..+-++|+. ...-...+-...+.+....|.|+-++....+..+
T Consensus 124 gaD--------------~~v~VWdi~----------------~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~---- 169 (775)
T KOG0319|consen 124 GAD--------------GRVKVWDIK----------------NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGAT---- 169 (775)
T ss_pred ccc--------------ceEEEEEee----------------CCEEEEEecCCCceEEEEEeCCccchhheeecCC----
Confidence 322 245555551 3344556777788899999999877633333222
Q ss_pred CCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 005093 287 GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 366 (715)
Q Consensus 287 g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~t 366 (715)
...++++|+..+.. .+-. +. .+...+..+.+++|+..++..+. + .-++.+|+.+
T Consensus 170 -----D~~v~vwnl~~~~t-cl~~----------~~-------~H~S~vtsL~~~~d~~~~ls~~R-D--kvi~vwd~~~ 223 (775)
T KOG0319|consen 170 -----DGTVRVWNLNDKRT-CLHT----------MI-------LHKSAVTSLAFSEDSLELLSVGR-D--KVIIVWDLVQ 223 (775)
T ss_pred -----CceEEEEEcccCch-HHHH----------HH-------hhhhheeeeeeccCCceEEEecc-C--cEEEEeehhh
Confidence 23588888876443 1100 00 01113456778889886655432 2 3466667655
Q ss_pred CcEEEecCC
Q 005093 367 GELLRITPA 375 (715)
Q Consensus 367 g~~~~l~~~ 375 (715)
-+..++.+.
T Consensus 224 ~~~l~~lp~ 232 (775)
T KOG0319|consen 224 YKKLKTLPL 232 (775)
T ss_pred hhhhheech
Confidence 554444443
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.048 Score=61.17 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=59.9
Q ss_pred ceEEEEecCCCCCCeEEEEe-cCCccEEE-EecCccccccccCCCcccceeecCCCCeEEE-EeecCCCCCCCccCCCCC
Q 005093 55 SKLLVVRNPENESPIQFELW-SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAY-VAEEPSPSKPTFSLGSTK 131 (715)
Q Consensus 55 ~~la~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~-~~~~~~~~~~~~~~~~~~ 131 (715)
.+|||+.... + .+..++ ++...+.+ +.....+ ..+.|||||++||| ++-+.-.
T Consensus 319 tkiAfv~~~~-~--~L~~~D~dG~n~~~ve~~~~~~i----------~sP~~SPDG~~vAY~ts~e~~~----------- 374 (912)
T TIGR02171 319 AKLAFRNDVT-G--NLAYIDYTKGASRAVEIEDTISV----------YHPDISPDGKKVAFCTGIEGLP----------- 374 (912)
T ss_pred eeEEEEEcCC-C--eEEEEecCCCCceEEEecCCCce----------ecCcCCCCCCEEEEEEeecCCC-----------
Confidence 5789987632 2 677788 55555555 5544444 68999999999999 4322100
Q ss_pred CCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc--eEeecCCCCCCccceEEEecCCCCCccEEEEEeec
Q 005093 132 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 208 (715)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~--~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~ 208 (715)
+.+.||+.+|.+.. +..|. -.+..+-..+...+|.+. |+|++..
T Consensus 375 ----------------------------g~s~vYv~~L~t~~~~~vkl~--ve~aaiprwrv~e~gdt~---ivyv~~a 420 (912)
T TIGR02171 375 ----------------------------GKSSVYVRNLNASGSGLVKLP--VENAAIPRWRVLENGDTV---IVYVSDA 420 (912)
T ss_pred ----------------------------CCceEEEEehhccCCCceEee--cccccccceEecCCCCeE---EEEEcCC
Confidence 24779999997643 33341 122233344456788874 7787643
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.15 Score=48.94 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=27.0
Q ss_pred cCceEEEEEccCCceEeec-CCCCCCccceEEEecCCCCCccEEEEEe
Q 005093 160 RQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVG 206 (715)
Q Consensus 160 ~~~~l~~~~~~~g~~~~l~-~~~~~~~~~~~~~spdg~~~~~~i~~~~ 206 (715)
.+..|-++|...+ .+.+- -....+...++.|.+||+. ++...
T Consensus 138 ~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrt----lvvan 180 (366)
T COG3490 138 NRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRT----LVVAN 180 (366)
T ss_pred CCceEEEEecccc-cceecccccCCcCcceeEEecCCcE----EEEeC
Confidence 3577889988633 33331 0223445668999999998 77653
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0074 Score=60.38 Aligned_cols=168 Identities=17% Similarity=0.085 Sum_probs=88.1
Q ss_pred ceEEEEE-ccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 162 PSLFVIN-INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 162 ~~l~~~~-~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
..+.+|+ +........ ......+.++.|||||+. |++.+.. ...||..+
T Consensus 166 g~lRv~~~Ps~~t~l~e--~~~~~eV~DL~FS~dgk~----lasig~d--------------~~~VW~~~---------- 215 (398)
T KOG0771|consen 166 GTLRVWEWPSMLTILEE--IAHHAEVKDLDFSPDGKF----LASIGAD--------------SARVWSVN---------- 215 (398)
T ss_pred ceEEEEecCcchhhhhh--HhhcCccccceeCCCCcE----EEEecCC--------------ceEEEEec----------
Confidence 5577777 322222222 233456789999999999 9998732 12566665
Q ss_pred hhhhccCCCCCCceecCCC--CccccceeEcCCC---CeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeee
Q 005093 241 LELKESSSEDLPVVNLTES--ISSAFFPRFSPDG---KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 315 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~~--~~~~~~~~~spdg---~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~ 315 (715)
.+....++++. +......+|+-|+ ...+++...+. ..-...++.+++.. ...++....
T Consensus 216 --------~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~----~~v~~~~~~~w~~~--~~l~~~~~~--- 278 (398)
T KOG0771|consen 216 --------TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPG----GGVRLCDISLWSGS--NFLRLRKKI--- 278 (398)
T ss_pred --------cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCC----CceeEEEeeeeccc--cccchhhhh---
Confidence 44455566633 2246778888887 33444444431 11111223333321 111110000
Q ss_pred eeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeEEEeecCCEEEE
Q 005093 316 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIA 393 (715)
Q Consensus 316 ~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~~~~~l~~ 393 (715)
..+ .++..+.-++||+.+.+.+. .+...| ++..+-+..++.+... .+....|+||.+.+.-
T Consensus 279 ---------~~~-----~siSsl~VS~dGkf~AlGT~-dGsVai--~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 279 ---------KRF-----KSISSLAVSDDGKFLALGTM-DGSVAI--YDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred ---------hcc-----CcceeEEEcCCCcEEEEecc-CCcEEE--EEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 000 14567778999997766655 443444 4554555555554433 3344578888776654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.002 Score=62.91 Aligned_cols=137 Identities=14% Similarity=0.184 Sum_probs=83.8
Q ss_pred CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 161 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
...|+++|+..+.+..- ..-.......+|+| +. ..|++. +.+..||.+|.
T Consensus 209 DrsIvLyD~R~~~Pl~K--Vi~~mRTN~IswnP--ea----fnF~~a-------------~ED~nlY~~Dm--------- 258 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKK--VILTMRTNTICWNP--EA----FNFVAA-------------NEDHNLYTYDM--------- 258 (433)
T ss_pred CCceEEEecccCCccce--eeeeccccceecCc--cc----cceeec-------------cccccceehhh---------
Confidence 36799999987765321 11122344679999 44 667662 23457999996
Q ss_pred hhhhccCCCCCCceecCCCCc-cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 241 LELKESSSEDLPVVNLTESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~~~~-~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
..-.+...+..+.. ..-++.|||.|+.++-.+.+. .|.++....+..+.+-... ..
T Consensus 259 -------R~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-----------sIRIf~~~~~~SRdiYhtk-RM---- 315 (433)
T KOG0268|consen 259 -------RNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-----------SIRIFPVNHGHSRDIYHTK-RM---- 315 (433)
T ss_pred -------hhhcccchhhcccceeEEEeccCCCcchhccccccc-----------eEEEeecCCCcchhhhhHh-hh----
Confidence 23333333333322 478899999999998776654 3555555554443221111 00
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 364 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~ 364 (715)
-.+..+.||-|.+ ++++.+++++.+||+-+.
T Consensus 316 -------------q~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 316 -------------QHVFCVKYSMDSK-YIISGSDDGNVRLWKAKA 346 (433)
T ss_pred -------------heeeEEEEecccc-EEEecCCCcceeeeecch
Confidence 0244667999987 557778888899998775
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.026 Score=60.59 Aligned_cols=146 Identities=14% Similarity=0.197 Sum_probs=85.8
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
...+.+.+.+||++.|+...+. ++..+| ..|+..+..- ..| +++.-...++|.|..++-...+..
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs-----~llrv~~L~tgk~irswK---a~H-----e~Pvi~ma~~~~g~LlAtggaD~~ 128 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRS-----QLLRVWSLPTGKLIRSWK---AIH-----EAPVITMAFDPTGTLLATGGADGR 128 (775)
T ss_pred hhhhheeeecCCccEEEEeecc-----ceEEEEEcccchHhHhHh---hcc-----CCCeEEEEEcCCCceEEeccccce
Confidence 3557889999999998877554 567777 5554444322 111 112257889999966655443332
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcc--cCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET--YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
.+.|......................|.|+|-.- ..+.....+++||+.++..-..+-......+..+.+++|+..
T Consensus 129 --v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~ 206 (775)
T KOG0319|consen 129 --VKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE 206 (775)
T ss_pred --EEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce
Confidence 2334433333333344444455555666666221 223345889999998665411110122335778999999998
Q ss_pred CccEEEEEe
Q 005093 198 LHQYLVFVG 206 (715)
Q Consensus 198 ~~~~i~~~~ 206 (715)
+++.+
T Consensus 207 ----~ls~~ 211 (775)
T KOG0319|consen 207 ----LLSVG 211 (775)
T ss_pred ----EEEec
Confidence 88776
|
|
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=66.52 Aligned_cols=136 Identities=18% Similarity=0.211 Sum_probs=92.4
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcC-CCCCCCCc--cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHG-GPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 532 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHG-g~~~~~~~--~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~ 532 (715)
.|.+..+...+-++|.+..+. ....|+.|+|-| |+....+- .-..+....++.|..|+..++|- ||.+.....
T Consensus 62 hF~~~~~~~~Qq~~y~n~~~~-~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~ 137 (514)
T KOG2182|consen 62 HFDSSNGKFFQQRFYNNNQWA-KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGD 137 (514)
T ss_pred hhhcchhhhhhhheeeccccc-cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCC
Confidence 444445555666677776542 456799999977 44332111 12235566678999999999998 665532111
Q ss_pred C------CCCCccchhhHHHHHHHHHHcCC-CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 533 P------GKVGSQDVNDVLTAIDHVIDMGL-ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 533 ~------~~~~~~~~~d~~~~i~~l~~~~~-~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
. .-...+.+.|++.+|+.+..+.. -+..+++.+|.|+-|.+++++=.++|+++.++|+.++++
T Consensus 138 ~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 138 LSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred CcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 0 01123346788888888877653 344599999999999999999999999999988877654
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0024 Score=64.06 Aligned_cols=132 Identities=18% Similarity=0.214 Sum_probs=79.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch----HHHHHHHhCCcEEEEEcCCCCC---CCchhhh-h--
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS----KSLAFLSSVGYSLLIVNYRGSL---GFGEEAL-Q-- 530 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~----~~~~~la~~G~~vi~~d~rG~~---~~g~~~~-~-- 530 (715)
+..+.+-.+..-..+=..+..|+++|. |.-+. ...|. .+.+...+.+..++.+.+|-.| .||.... +
T Consensus 61 ~~~tF~qRylin~~fw~~g~gPIffYt-GNEGd--ie~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~ 137 (492)
T KOG2183|consen 61 DNKTFDQRYLINDDFWKKGEGPIFFYT-GNEGD--IEWFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDAR 137 (492)
T ss_pred CccceeeEEEEecccccCCCCceEEEe-CCccc--HHHHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccChh
Confidence 344555555554444233447755554 52221 11111 1233445678889999988621 1222211 0
Q ss_pred cCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEec-CCcc
Q 005093 531 SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLC 595 (715)
Q Consensus 531 ~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~-~~~~ 595 (715)
.+..-..++...|.+..|.+|++.......+|+++|.|+||++++++-.++|..+.++.+. +|+.
T Consensus 138 hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 138 HLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVL 203 (492)
T ss_pred hhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceE
Confidence 0111122345778888999998876666789999999999999999999999987766544 4443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.065 Score=63.89 Aligned_cols=86 Identities=10% Similarity=0.106 Sum_probs=44.4
Q ss_pred ccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCC-CccccccCCCCCCccc
Q 005093 263 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD-CFPGLYSSSILSNPWL 341 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~ 341 (715)
...+++++||+ |+++... ...|.++|..++....+.... ... ..++ ...+.. ..+..++++
T Consensus 806 P~Gvavd~dG~-LYVADs~----------N~rIrviD~~tg~v~tiaG~G--~~G----~~dG~~~~a~l-~~P~GIavd 867 (1057)
T PLN02919 806 PLGVLCAKDGQ-IYVADSY----------NHKIKKLDPATKRVTTLAGTG--KAG----FKDGKALKAQL-SEPAGLALG 867 (1057)
T ss_pred CceeeEeCCCc-EEEEECC----------CCEEEEEECCCCeEEEEeccC--CcC----CCCCccccccc-CCceEEEEe
Confidence 34677889987 5443322 245888887765432221100 000 0000 000000 124566788
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 005093 342 SDGCTMLLSSIWGSSQVIISVNVSSGEL 369 (715)
Q Consensus 342 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~ 369 (715)
+||+ +|++. .+...|..+|+.+++.
T Consensus 868 ~dG~-lyVaD--t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 868 ENGR-LFVAD--TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCC-EEEEE--CCCCEEEEEECCCCcc
Confidence 8996 65543 3445788889888765
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.04 Score=56.28 Aligned_cols=229 Identities=12% Similarity=0.072 Sum_probs=126.7
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
..+....|=.||+.||---+. +.-++|.+......+.+-.....+ ....|+|++..++..+.++
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~s--G~V~vfD~k~r~iLR~~~ah~apv----------~~~~f~~~d~t~l~s~sDd---- 132 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDES--GHVKVFDMKSRVILRQLYAHQAPV----------HVTKFSPQDNTMLVSGSDD---- 132 (487)
T ss_pred cceeEEEeecCCeEEEccCCc--CcEEEeccccHHHHHHHhhccCce----------eEEEecccCCeEEEecCCC----
Confidence 346777787889877643222 333343311111111111122222 5788999998887765543
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE-eecCCCCCCccceEEEecCCCCCccE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~spdg~~~~~~ 201 (715)
..+-.||+++..++ .+ ......+...+|+|-...
T Consensus 133 ---------------------------------------~v~k~~d~s~a~v~~~l--~~htDYVR~g~~~~~~~h---- 167 (487)
T KOG0310|consen 133 ---------------------------------------KVVKYWDLSTAYVQAEL--SGHTDYVRCGDISPANDH---- 167 (487)
T ss_pred ---------------------------------------ceEEEEEcCCcEEEEEe--cCCcceeEeeccccCCCe----
Confidence 45777888888763 23 334446778899999999
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceec-CCCCccccceeEcCCCCeEEEEec
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
|++++.-++ .|-.+|+ .......+ .+....+.+..+.|.|..|+-++.
T Consensus 168 ivvtGsYDg--------------~vrl~Dt-----------------R~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG 216 (487)
T KOG0310|consen 168 IVVTGSYDG--------------KVRLWDT-----------------RSLTSRVVELNHGCPVESVLALPSGSLIASAGG 216 (487)
T ss_pred EEEecCCCc--------------eEEEEEe-----------------ccCCceeEEecCCCceeeEEEcCCCCEEEEcCC
Confidence 999884333 4555564 22222222 234446888999999998875553
Q ss_pred CCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
.++-+||+.+|+.. ++... .+...+..+++..|+..|+ +..-++...+|
T Consensus 217 ------------n~vkVWDl~~G~ql-l~~~~-----------------~H~KtVTcL~l~s~~~rLl-S~sLD~~VKVf 265 (487)
T KOG0310|consen 217 ------------NSVKVWDLTTGGQL-LTSMF-----------------NHNKTVTCLRLASDSTRLL-SGSLDRHVKVF 265 (487)
T ss_pred ------------CeEEEEEecCCcee-hhhhh-----------------cccceEEEEEeecCCceEe-ecccccceEEE
Confidence 35889998865532 11110 0111334455666776554 44445555565
Q ss_pred EEECCCCcEEE-ecCCCCCceeEEEeecCCEEEEEEeC
Q 005093 361 SVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSS 397 (715)
Q Consensus 361 ~~d~~tg~~~~-l~~~~~~~~~~~~s~~~~~l~~~~~~ 397 (715)
. +.+-++.- +.-... +-...+++++..+++--++
T Consensus 266 d--~t~~Kvv~s~~~~~p-vLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 266 D--TTNYKVVHSWKYPGP-VLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred E--ccceEEEEeeecccc-eeeEEecCCCceEEEeccc
Confidence 4 32333222 222222 2235677777777654443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.024 Score=59.34 Aligned_cols=271 Identities=14% Similarity=0.085 Sum_probs=138.8
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
+.+.+...+..|.|.+||--+.. + ...|| .+|+-.+.+++...+ ..++|+|.++.-+..+...
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdD--G---tvriWEi~TgRcvr~~~~d~~I----------~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDD--G---TVRIWEIATGRCVRTVQFDSEI----------RSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCC--C---cEEEEEeecceEEEEEeeccee----------EEEEecCCCCceeEEEEec
Confidence 45668889999999999865443 3 44555 566666666665544 8999999987654443222
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc-----eEeecCCCCCCccceEEEec
Q 005093 119 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-----VQAVKGIPKSLSVGQVVWAP 193 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-----~~~l~~~~~~~~~~~~~~sp 193 (715)
.. .-..+............ ..-+.-.|. ......++..|.....+ +... ....-.+.++.|.-
T Consensus 464 ~~-~~ivnp~~G~~~e~~~t----~ell~~~~~-----~~~p~~~~~~W~~~~~~e~~~~v~~~--I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 464 EC-VLIVNPIFGDRLEVGPT----KELLASAPN-----ESEPDAAVVTWSRASLDELEKGVCIV--IKHPKSIRQVTWHR 531 (733)
T ss_pred Cc-eEEeCccccchhhhcch----hhhhhcCCC-----ccCCcccceeechhhhhhhccceEEE--EecCCccceeeeec
Confidence 11 10111111100000000 000000000 00011244455433111 1111 22333577899999
Q ss_pred CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCC
Q 005093 194 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 273 (715)
Q Consensus 194 dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~ 273 (715)
+|.. |+.+.-.. .+..+++.+|. .......+....+.+-...|.|---
T Consensus 532 kGDY----latV~~~~------------~~~~VliHQLS----------------K~~sQ~PF~kskG~vq~v~FHPs~p 579 (733)
T KOG0650|consen 532 KGDY----LATVMPDS------------GNKSVLIHQLS----------------KRKSQSPFRKSKGLVQRVKFHPSKP 579 (733)
T ss_pred CCce----EEEeccCC------------CcceEEEEecc----------------cccccCchhhcCCceeEEEecCCCc
Confidence 9998 88776332 22367777761 2222234445566788889999888
Q ss_pred eEEEEecCCCCCCCCccccceeEeeecCCCCC-C-CcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEe
Q 005093 274 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-F-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 351 (715)
Q Consensus 274 ~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~-~-~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~ 351 (715)
+|+.++.+. |.++|+..... + .+|... -+..++.+|.|..|++.+
T Consensus 580 ~lfVaTq~~------------vRiYdL~kqelvKkL~tg~k---------------------wiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 580 YLFVATQRS------------VRIYDLSKQELVKKLLTGSK---------------------WISSMSIHPNGDNLILGS 626 (733)
T ss_pred eEEEEeccc------------eEEEehhHHHHHHHHhcCCe---------------------eeeeeeecCCCCeEEEec
Confidence 887666553 77778876432 1 122111 134556778888787765
Q ss_pred eeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEE
Q 005093 352 IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 406 (715)
Q Consensus 352 ~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~ 406 (715)
.+ ...-.+-+|+.++-.+.+..... ....++-....=+|.+.+.+..-.||.
T Consensus 627 ~d-~k~~WfDldlsskPyk~lr~H~~--avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 627 YD-KKMCWFDLDLSSKPYKTLRLHEK--AVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CC-CeeEEEEcccCcchhHHhhhhhh--hhhhhhhccccceeeeecCCCcEEEEe
Confidence 53 22333345555555555544333 112223333333444444444444544
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.11 Score=49.85 Aligned_cols=55 Identities=24% Similarity=0.486 Sum_probs=36.6
Q ss_pred EeeCCCCceEEEEecCCCCCCeEEEEe--cC--CccEEEEecCccccccccCCCcccceeecCCCCeEEEE
Q 005093 48 VVPSPSGSKLLVVRNPENESPIQFELW--SQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 114 (715)
Q Consensus 48 ~~~Spdg~~la~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~ 114 (715)
.+.|.||+.||.+.+. ..++. ++ +......+++.+.+-. -..+.||||++.|||.
T Consensus 3 ~~~~~~Gk~lAi~qd~------~iEiRsa~Ddf~si~~kcqVpkD~~PQ------WRkl~WSpD~tlLa~a 61 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ------CIEIRSAKDDFSSIIGKCQVPKDPNPQ------WRKLAWSPDCTLLAYA 61 (282)
T ss_pred eeecCCCcEEEEEecc------EEEEEeccCCchheeEEEecCCCCCch------heEEEECCCCcEEEEE
Confidence 4678999999998663 45554 22 2333444555554211 1588999999999996
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.12 Score=55.02 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=94.4
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe---cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
..+...++|.+.+.||..+..+ ...+| .+=-.+.++.. ++. ..+.++.|++.| +|.-+ .
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g-----~IEiwN~~~~w~~~~vi~g--~~d------rsIE~L~W~e~~-RLFS~-g--- 87 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDG-----NIEIWNLSNNWFLEPVIHG--PED------RSIESLAWAEGG-RLFSS-G--- 87 (691)
T ss_pred cceEEEEEeccCCceeeeccCC-----cEEEEccCCCceeeEEEec--CCC------CceeeEEEccCC-eEEee-c---
Confidence 5688999999999999776553 45556 22123333333 222 234899999544 55332 1
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCc
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
....|.-||+-+++...-. ......+.+++.+|.+..
T Consensus 88 ----------------------------------------~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~-- 124 (691)
T KOG2048|consen 88 ----------------------------------------LSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTI-- 124 (691)
T ss_pred ----------------------------------------CCceEEEEecccCceeEEe-cCCCcceeEEEeCCccce--
Confidence 1266899999888766542 333445667777888876
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc---eecCCCCccccceeEcCCCCeEE
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~~~~spdg~~l~ 276 (715)
++.... + +.++.++. ..+.. +.|....+.+-++.|+|+|.+|+
T Consensus 125 --l~Igcd-------------d--Gvl~~~s~-----------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 125 --LAIGCD-------------D--GVLYDFSI-----------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred --EEeecC-------------C--ceEEEEec-----------------CCceEEEEeecccccceEEEEEecCCccEEE
Confidence 554431 1 24555553 22322 22333456688899999999997
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
-.+.+ ..|..+|..++..
T Consensus 171 ~Gs~D-----------g~Iriwd~~~~~t 188 (691)
T KOG2048|consen 171 GGSID-----------GVIRIWDVKSGQT 188 (691)
T ss_pred ecccC-----------ceEEEEEcCCCce
Confidence 55544 2366677666554
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.043 Score=54.05 Aligned_cols=175 Identities=17% Similarity=0.162 Sum_probs=94.1
Q ss_pred EEEEEccCC--ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 164 LFVININSG--EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 164 l~~~~~~~g--~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
+.+||.++- ..+.+ ...+..+..+.|-|-|.. |+-.. ++..|...++
T Consensus 174 ~~LWd~~~~~~c~ks~--~gh~h~vS~V~f~P~gd~----ilS~s---------------rD~tik~We~---------- 222 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSL--IGHEHGVSSVFFLPLGDH----ILSCS---------------RDNTIKAWEC---------- 222 (406)
T ss_pred hhheeHHHHHHHHHHh--cCcccceeeEEEEecCCe----eeecc---------------cccceeEEec----------
Confidence 677777652 12222 233446778899999987 77665 3334555555
Q ss_pred hhhccCCCCC-CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcc-cceeeeeece
Q 005093 242 ELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL-EKIVDVIPVV 319 (715)
Q Consensus 242 ~~~~~~~~~~-~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt-~~~~~~~~~~ 319 (715)
.++ ...+++.+...+..++.+-||.-++-.++.. .|.++-+.+++-+.+- .... +++-+
T Consensus 223 -------~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq-----------tl~vW~~~t~~~k~~lR~hEh-~vEci 283 (406)
T KOG0295|consen 223 -------DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ-----------TLRVWVVATKQCKAELREHEH-PVECI 283 (406)
T ss_pred -------ccceeEEeccCchHhEEEEEecCCeeEEEecCCCc-----------eEEEEEeccchhhhhhhcccc-ceEEE
Confidence 344 4556677777888899999998776555542 3555655666433222 1111 22222
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-CCCceeEEEeecCCEEEEEE
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s~~~~~l~~~~ 395 (715)
........| ++....-+.|+-.++++.+++...++ +|+.+|...--..+ ..-+....|+|.|+.|+-.+
T Consensus 284 ~wap~~~~~-----~i~~at~~~~~~~~l~s~SrDktIk~--wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca 353 (406)
T KOG0295|consen 284 AWAPESSYP-----SISEATGSTNGGQVLGSGSRDKTIKI--WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA 353 (406)
T ss_pred EecccccCc-----chhhccCCCCCccEEEeecccceEEE--EeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe
Confidence 222222122 12222223345567777776654445 56667865433322 22234456777776655333
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.032 Score=59.27 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=102.1
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
+...++..+.||||++|||..-. ...+|.+...+ ...+..+....... -....+.|+-|+.++++.+..
T Consensus 381 ~~~nIs~~aiSPdg~~Ia~st~~---~~~iy~L~~~~-~vk~~~v~~~~~~~----~~a~~i~ftid~~k~~~~s~~--- 449 (691)
T KOG2048|consen 381 EKENISCAAISPDGNLIAISTVS---RTKIYRLQPDP-NVKVINVDDVPLAL----LDASAISFTIDKNKLFLVSKN--- 449 (691)
T ss_pred CccceeeeccCCCCCEEEEeecc---ceEEEEeccCc-ceeEEEeccchhhh----ccceeeEEEecCceEEEEecc---
Confidence 44678999999999999996432 22466665322 22232221111000 011578899999999887621
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec---CCCCCCccceEEEecCCCC
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~---~~~~~~~~~~~~~spdg~~ 197 (715)
...|.+.+++++....+. .+...-.+..+.-||||+.
T Consensus 450 ----------------------------------------~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~y 489 (691)
T KOG2048|consen 450 ----------------------------------------IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNY 489 (691)
T ss_pred ----------------------------------------cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCE
Confidence 155777777776544432 1222335678889999998
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecC-CCCccccceeEcCC-CCeE
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPD-GKFL 275 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~~~~spd-g~~l 275 (715)
|+... ....|+++++ ++++.+.|. ......+...++|. -+.|
T Consensus 490 ----iaa~~---------------t~g~I~v~nl-----------------~~~~~~~l~~rln~~vTa~~~~~~~~~~l 533 (691)
T KOG2048|consen 490 ----IAAIS---------------TRGQIFVYNL-----------------ETLESHLLKVRLNIDVTAAAFSPFVRNRL 533 (691)
T ss_pred ----EEEEe---------------ccceEEEEEc-----------------ccceeecchhccCcceeeeeccccccCcE
Confidence 88775 3347999998 777777665 33455677778854 4456
Q ss_pred EEEecCCCCCCCCccccceeEeeecCC
Q 005093 276 VFLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
+....+ .++|.+|+..
T Consensus 534 vvats~-----------nQv~efdi~~ 549 (691)
T KOG2048|consen 534 VVATSN-----------NQVFEFDIEA 549 (691)
T ss_pred EEEecC-----------CeEEEEecch
Confidence 554433 3688888844
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.073 Score=54.71 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=55.0
Q ss_pred cCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 160 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 160 ~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
.....+++|.++..+..+. +. +....-++|||||.. |+..+ .++.||++.++
T Consensus 426 ~~G~w~V~d~e~~~lv~~~-~d-~~~ls~v~ysp~G~~----lAvgs---------------~d~~iyiy~Vs------- 477 (626)
T KOG2106|consen 426 ATGRWFVLDTETQDLVTIH-TD-NEQLSVVRYSPDGAF----LAVGS---------------HDNHIYIYRVS------- 477 (626)
T ss_pred ccceEEEEecccceeEEEE-ec-CCceEEEEEcCCCCE----EEEec---------------CCCeEEEEEEC-------
Confidence 3477899999987776662 33 667888999999998 88765 22355555441
Q ss_pred hhhhhccCCCCC-CceecCCCC-ccccceeEcCCCCeEEEEe
Q 005093 240 ELELKESSSEDL-PVVNLTESI-SSAFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 240 ~~~~~~~~~~~~-~~~~lt~~~-~~~~~~~~spdg~~l~~~~ 279 (715)
++| ...++-.-. ..+....||+|+++|.-.+
T Consensus 478 ---------~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 478 ---------ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred ---------CCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 333 333332211 4578899999999886444
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.036 Score=53.14 Aligned_cols=260 Identities=12% Similarity=0.051 Sum_probs=132.6
Q ss_pred ccccccccccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCcc
Q 005093 2 FSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQL 79 (715)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~ 79 (715)
|..+.+=+-...++..|+++++.++-++.-.++... +.+....|++||+.|+-...+. .+..| ..|+.
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs-----gAVM~l~~~~d~s~i~S~gtDk-----~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHS-----GAVMELHGMRDGSHILSCGTDK-----TVRGWDAETGKR 124 (338)
T ss_pred ECCCCCeEeecCCcceEEEEeccccccceeeecccc-----ceeEeeeeccCCCEEEEecCCc-----eEEEEeccccee
Confidence 444555556666777888887877776665555444 7899999999999998664442 34445 55655
Q ss_pred EEEEecCccccccccCC--CcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccC
Q 005093 80 EKEFHVPQTVHGSVYAD--GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA 157 (715)
Q Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 157 (715)
.+........-+.+.+. +.+.-.+=|+||+-=++=.... ....++. ..-....+.|.....+...
T Consensus 125 ~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~------------~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 125 IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE------------NKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred eehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc------------cceeEEEEEecccccceee
Confidence 54433221110000000 1112234455555443321110 0000100 0000112223222122222
Q ss_pred CccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 158 GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 158 ~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
+--.+.|-+||+..++..-+. .-....+..+..||+|.. ++-.+-. +.+-++|+-
T Consensus 192 ggIdn~ikvWd~r~~d~~~~l-sGh~DtIt~lsls~~gs~----llsnsMd---------------~tvrvwd~r----- 246 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKNDGLYTL-SGHADTITGLSLSRYGSF----LLSNSMD---------------NTVRVWDVR----- 246 (338)
T ss_pred ccccCceeeeccccCcceEEe-ecccCceeeEEeccCCCc----ccccccc---------------ceEEEEEec-----
Confidence 223478999999776655441 222235778899999998 7765421 234444430
Q ss_pred hhhhhhhccCCCCCCc-eecCCC-----CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccc
Q 005093 238 ASELELKESSSEDLPV-VNLTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 311 (715)
Q Consensus 238 ~~~~~~~~~~~~~~~~-~~lt~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~ 311 (715)
+ -..++. ..+... +...-.-+|||+++++-+.+.+. .+|++|..+......
T Consensus 247 -----p----~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr-----------~vyvwd~~~r~~lyk--- 303 (338)
T KOG0265|consen 247 -----P----FAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR-----------FVYVWDTTSRRILYK--- 303 (338)
T ss_pred -----c----cCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc-----------eEEEeecccccEEEE---
Confidence 0 012221 222221 12345578999999997776553 488888554332110
Q ss_pred eeeeeeceecCCCCCccccccCCCCCCccccCCCEEE
Q 005093 312 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 348 (715)
Q Consensus 312 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~ 348 (715)
.|| +.+++..+.|.|....|+
T Consensus 304 ---------------lpG-h~gsvn~~~Fhp~e~iil 324 (338)
T KOG0265|consen 304 ---------------LPG-HYGSVNEVDFHPTEPIIL 324 (338)
T ss_pred ---------------cCC-cceeEEEeeecCCCcEEE
Confidence 222 223566778888876443
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.005 Score=64.47 Aligned_cols=135 Identities=16% Similarity=0.245 Sum_probs=75.4
Q ss_pred cccccceEEEEEEEeecCCCCccccccCC-CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe---cCCccEEEEe
Q 005093 9 LLANKRKKFMLSTVISKENENSVTFQWAP-FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFH 84 (715)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~ 84 (715)
.-.+..+-.||.+ ..++......|... ++.+...+....|.|=..-++-++..+ -...+| .....-++..
T Consensus 645 Va~ddg~i~lWr~--~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd----~Ti~lWDl~~~~~~~~l~g 718 (1012)
T KOG1445|consen 645 VATDDGQINLWRL--TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD----STIELWDLANAKLYSRLVG 718 (1012)
T ss_pred ecccCceEEEEEe--ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc----ceeeeeehhhhhhhheecc
Confidence 3445566688884 44443223222222 444445677777777554444333322 234455 2222223332
Q ss_pred cCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceE
Q 005093 85 VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSL 164 (715)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 164 (715)
....+ -+++|||||++||-++.+ ..|
T Consensus 719 HtdqI----------f~~AWSpdGr~~AtVcKD--------------------------------------------g~~ 744 (1012)
T KOG1445|consen 719 HTDQI----------FGIAWSPDGRRIATVCKD--------------------------------------------GTL 744 (1012)
T ss_pred CcCce----------eEEEECCCCcceeeeecC--------------------------------------------ceE
Confidence 22222 589999999999998654 457
Q ss_pred EEEEccCCceEeec-CCCCCCccceEEEecCCCCCccEEEEEee
Q 005093 165 FVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGW 207 (715)
Q Consensus 165 ~~~~~~~g~~~~l~-~~~~~~~~~~~~~spdg~~~~~~i~~~~~ 207 (715)
+|+.+..++..... ..+.......+.|.=||+. |+.++-
T Consensus 745 rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~----viv~Gf 784 (1012)
T KOG1445|consen 745 RVYEPRSREQPVYEGKGPVGTRGARILWACDGRI----VIVVGF 784 (1012)
T ss_pred EEeCCCCCCCccccCCCCccCcceeEEEEecCcE----EEEecc
Confidence 88887766543331 1222334456789999997 777663
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.042 Score=53.24 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=68.8
Q ss_pred CCcccCCcCcccCCccCceEEEEEc-cCCceEeecC--CC---C-CCccceEEEecCCCCCccEEEEEeecCccceeeee
Q 005093 145 QGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAVKG--IP---K-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 217 (715)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~l~~~~~-~~g~~~~l~~--~~---~-~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~ 217 (715)
.+.|.+| |+.+...-...|.++|. ..|.--.+.. +. + ...+..++|||-..++ ++.-+
T Consensus 163 sL~Fs~D-GeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~---~a~gs----------- 227 (406)
T KOG2919|consen 163 SLQFSPD-GEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKT---LAVGS----------- 227 (406)
T ss_pred eEEecCC-CCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcc---eeeec-----------
Confidence 4457888 66666556688999998 4554222210 11 1 1235678899955541 45443
Q ss_pred eeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEe
Q 005093 218 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 297 (715)
Q Consensus 218 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~ 297 (715)
+.....||.-+ ..+....|-...+.+....|-+||++|+--+..+ ..|..
T Consensus 228 --Y~q~~giy~~~------------------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~----------dkIl~ 277 (406)
T KOG2919|consen 228 --YGQRVGIYNDD------------------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKD----------DKILC 277 (406)
T ss_pred --ccceeeeEecC------------------CCCceeeecccCCCeeeEEeccCcCeecccccCC----------CeEEE
Confidence 12223566665 4555566667778899999999999885433332 34777
Q ss_pred eecCC
Q 005093 298 IDWPT 302 (715)
Q Consensus 298 ~~~~~ 302 (715)
+|+..
T Consensus 278 WDiR~ 282 (406)
T KOG2919|consen 278 WDIRY 282 (406)
T ss_pred Eeehh
Confidence 77654
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0044 Score=61.26 Aligned_cols=117 Identities=19% Similarity=0.344 Sum_probs=79.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhC---C------cEEEEEcCCCCCCCchhhhhc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---G------YSLLIVNYRGSLGFGEEALQS 531 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~---G------~~vi~~d~rG~~~~g~~~~~~ 531 (715)
.|+.+|-.-..|+..+..++.-.++++||.|++ ...|...+..|... | |.|++|..+| ||-+-.
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGs--v~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG---ygwSd~-- 204 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGS--VREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG---YGWSDA-- 204 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEEecCCCch--HHHHHhhhhhhcCccccCCccceeEEEeccCCCC---cccCcC--
Confidence 688888776666643333444448889998776 44565666666443 3 7899999999 654431
Q ss_pred CCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEE
Q 005093 532 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 588 (715)
Q Consensus 532 ~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 588 (715)
+...|-. ...++..++-|.=+ +.-++..|-|.-+|..++..+|..+|+.+.+.
T Consensus 205 -~sk~GFn-~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~Gl 257 (469)
T KOG2565|consen 205 -PSKTGFN-AAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGL 257 (469)
T ss_pred -CccCCcc-HHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHh
Confidence 2222322 44555555555444 34588999999999999999999999987764
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.012 Score=53.30 Aligned_cols=143 Identities=24% Similarity=0.290 Sum_probs=78.1
Q ss_pred hhhhccccc-eeeeecccccccccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch------------
Q 005093 434 VKSLLSSRQ-FSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS------------ 500 (715)
Q Consensus 434 ~~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~------------ 500 (715)
+..+|+... +....||+... ...+. .+++..+++ -..+..++|+|||.+....+ .|.
T Consensus 62 VYeLLEk~c~Lkr~~ip~d~~-------e~E~~-SFiF~s~~~-lt~~~kLlVLIHGSGvVrAG-QWARrLIIN~~Ld~G 131 (297)
T KOG3967|consen 62 VYELLEKDCNLKRVSIPVDAT-------ESEPK-SFIFMSEDA-LTNPQKLLVLIHGSGVVRAG-QWARRLIINEDLDSG 131 (297)
T ss_pred HHHHHHhcCCceeEeecCCCC-------CCCCc-ceEEEChhH-hcCccceEEEEecCceEecc-hHhhhhhhccccccC
Confidence 344555444 45566665431 11122 234444432 33456689999996543311 111
Q ss_pred ---HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHH
Q 005093 501 ---KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 577 (715)
Q Consensus 501 ---~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 577 (715)
+.+....+.||.|++.+.--...+-....+ +..+-...++.+.-.-..++.. .....|+++.||+||+.++.+
T Consensus 132 TQiPyi~rAv~~Gygviv~N~N~~~kfye~k~n--p~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l 207 (297)
T KOG3967|consen 132 TQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRN--PQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDL 207 (297)
T ss_pred CcChHHHHHHHcCCcEEEeCCchhhhhhhcccC--cchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHH
Confidence 234455689999999885422222111111 1112222344444444444433 356889999999999999999
Q ss_pred HhhCCC--ceeEEEe
Q 005093 578 IGQAPD--KFVAAAA 590 (715)
Q Consensus 578 a~~~p~--~~~~~v~ 590 (715)
+.+.|+ ++.++++
T Consensus 208 ~~~f~~d~~v~aial 222 (297)
T KOG3967|consen 208 VERFPDDESVFAIAL 222 (297)
T ss_pred HHhcCCccceEEEEe
Confidence 998875 4444443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.2 Score=48.54 Aligned_cols=93 Identities=8% Similarity=0.014 Sum_probs=51.9
Q ss_pred cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC-CCcccceeeeeeceecCCCCCccccccCCCCCCcc
Q 005093 262 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 340 (715)
Q Consensus 262 ~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 340 (715)
.....+|+|....|++...++. -.||.++...... ..++..... ..+.+...+..+.+
T Consensus 182 GfEGlA~d~~~~~l~~aKEr~P---------~~I~~~~~~~~~l~~~~~~~~~~------------~~~~f~~DvSgl~~ 240 (316)
T COG3204 182 GFEGLAWDPVDHRLFVAKERNP---------IGIFEVTQSPSSLSVHASLDPTA------------DRDLFVLDVSGLEF 240 (316)
T ss_pred CceeeecCCCCceEEEEEccCC---------cEEEEEecCCcccccccccCccc------------ccceEeecccccee
Confidence 4778999999999999988763 3477776322111 111111000 11122234556667
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 005093 341 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 377 (715)
Q Consensus 341 ~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 377 (715)
.+....+++.+.+. ..|..+|+++.-+..+....+
T Consensus 241 ~~~~~~LLVLS~ES--r~l~Evd~~G~~~~~lsL~~g 275 (316)
T COG3204 241 NAITNSLLVLSDES--RRLLEVDLSGEVIELLSLTKG 275 (316)
T ss_pred cCCCCcEEEEecCC--ceEEEEecCCCeeeeEEeccC
Confidence 66555677766543 478888885444555544333
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.021 Score=57.07 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=70.0
Q ss_pred CCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcc
Q 005093 249 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 328 (715)
Q Consensus 249 ~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~ 328 (715)
.+...+.-.+..+.+.++..|+||..|.-.+.++ .|-++|+.+.+.+...... .|.
T Consensus 330 Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd-----------tl~viDlRt~eI~~~~sA~-------------g~k 385 (459)
T KOG0288|consen 330 RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD-----------TLKVIDLRTKEIRQTFSAE-------------GFK 385 (459)
T ss_pred cCCceeeEeecCcceeeEeeccCCeEEeeecCCC-----------ceeeeecccccEEEEeecc-------------ccc
Confidence 4555444444455788899999999987664443 3778888886653321111 000
Q ss_pred ccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-C--ceeEEEeecCCEEE
Q 005093 329 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-N--FSWSLLTLDGDNII 392 (715)
Q Consensus 329 g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~--~~~~~~s~~~~~l~ 392 (715)
-.......+||||+++++..+. ...+|.|++.+|+++.+..... + +....|++.|..++
T Consensus 386 --~asDwtrvvfSpd~~YvaAGS~---dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 386 --CASDWTRVVFSPDGSYVAAGSA---DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred --cccccceeEECCCCceeeeccC---CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 0012457789999997665443 3478888888999888765544 2 23345566555544
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.024 Score=58.43 Aligned_cols=77 Identities=10% Similarity=0.142 Sum_probs=51.1
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|-+|...+--...+ ......+..++|.|++.. ++|+.. .+++.-.|.
T Consensus 126 G~iKiWSrsGMLRStl--~Q~~~~v~c~~W~p~S~~----vl~c~g----------------~h~~IKpL~--------- 174 (737)
T KOG1524|consen 126 GVIKIWSRSGMLRSTV--VQNEESIRCARWAPNSNS----IVFCQG----------------GHISIKPLA--------- 174 (737)
T ss_pred ceEEEEeccchHHHHH--hhcCceeEEEEECCCCCc----eEEecC----------------CeEEEeecc---------
Confidence 5577777644333333 334456788999999999 999861 267766651
Q ss_pred hhhccCCCCCCceecCCCCccccceeEcCCCCeEE
Q 005093 242 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~ 276 (715)
....+.+--.+++-+-...|+|..+-|+
T Consensus 175 -------~n~k~i~WkAHDGiiL~~~W~~~s~lI~ 202 (737)
T KOG1524|consen 175 -------ANSKIIRWRAHDGLVLSLSWSTQSNIIA 202 (737)
T ss_pred -------cccceeEEeccCcEEEEeecCcccccee
Confidence 2334444555677788889999888665
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.44 Score=50.24 Aligned_cols=211 Identities=15% Similarity=0.139 Sum_probs=123.7
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 123 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 123 (715)
....+.+++|.+++ +.+. +...+..++ ............... ..+.++||+++++..-...
T Consensus 76 p~~i~v~~~~~~vy-v~~~--~~~~v~vid~~~~~~~~~~~vG~~P----------~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKVY-VTTG--DSNTVSVIDTATNTVLGSIPVGLGP----------VGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeEE-EecC--CCCeEEEEcCcccceeeEeeeccCC----------ceEEECCCCCEEEEEeccc-----
Confidence 45567888888764 4343 233566665 332222222222233 6899999999997752210
Q ss_pred CccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEE
Q 005093 124 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 203 (715)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~ 203 (715)
....+.++|.+++++... .+........+++|+|+. ++
T Consensus 138 ------------------------------------~~~~vsvid~~t~~~~~~--~~vG~~P~~~a~~p~g~~----vy 175 (381)
T COG3391 138 ------------------------------------GNNTVSVIDAATNKVTAT--IPVGNTPTGVAVDPDGNK----VY 175 (381)
T ss_pred ------------------------------------CCceEEEEeCCCCeEEEE--EecCCCcceEEECCCCCe----EE
Confidence 137789999988876655 222223377899999996 44
Q ss_pred EEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCcee-----cCCCCccccceeEcCCCCeEEEE
Q 005093 204 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-----LTESISSAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----lt~~~~~~~~~~~spdg~~l~~~ 278 (715)
..+. ..+.|..+|. ++....+ ............++|||++++..
T Consensus 176 -v~~~-------------~~~~v~vi~~-----------------~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 176 -VTNS-------------DDNTVSVIDT-----------------SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred -EEec-------------CCCeEEEEeC-----------------CCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence 4432 2246888885 4444433 11222345778999999977554
Q ss_pred ecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 358 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 358 (715)
-..+ ....+..+|..++......... .. . ........|+|+.++..... ...
T Consensus 225 ~~~~--------~~~~v~~id~~~~~v~~~~~~~---------~~-------~--~~~~v~~~p~g~~~yv~~~~--~~~ 276 (381)
T COG3391 225 NDGS--------GSNNVLKIDTATGNVTATDLPV---------GS-------G--APRGVAVDPAGKAAYVANSQ--GGT 276 (381)
T ss_pred eccC--------CCceEEEEeCCCceEEEecccc---------cc-------C--CCCceeECCCCCEEEEEecC--CCe
Confidence 4432 1245788887775542210000 00 0 12345678999977776554 457
Q ss_pred EEEEECCCCcEEEecC
Q 005093 359 IISVNVSSGELLRITP 374 (715)
Q Consensus 359 l~~~d~~tg~~~~l~~ 374 (715)
++.+|..+..+.....
T Consensus 277 V~vid~~~~~v~~~~~ 292 (381)
T COG3391 277 VSVIDGATDRVVKTGP 292 (381)
T ss_pred EEEEeCCCCceeeeec
Confidence 8888988777666543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.023 Score=56.01 Aligned_cols=130 Identities=16% Similarity=0.163 Sum_probs=74.1
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCC
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYAD 96 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (715)
.||++|+.+=..-.+--|+.|-+ .+..+.++++++.+|||=.....+ +++..+ .-..+.+.... .| +
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~---~gl~AlS~n~~n~ylAyp~s~t~G--dV~l~d-~~nl~~v~~I~--aH-----~ 173 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNP---KGLCALSPNNANCYLAYPGSTTSG--DVVLFD-TINLQPVNTIN--AH-----K 173 (391)
T ss_pred cEEEEecccceeehhhhccCCCc---cceEeeccCCCCceEEecCCCCCc--eEEEEE-cccceeeeEEE--ec-----C
Confidence 47777776544322222221211 345667778888899997555323 343333 22222322221 11 1
Q ss_pred CcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE-
Q 005093 97 GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ- 175 (715)
Q Consensus 97 ~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~- 175 (715)
+.+..++|||||+.||-.++.. ..|.|+....|+..
T Consensus 174 ~~lAalafs~~G~llATASeKG-------------------------------------------TVIRVf~v~~G~kl~ 210 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKG-------------------------------------------TVIRVFSVPEGQKLY 210 (391)
T ss_pred CceeEEEECCCCCEEEEeccCc-------------------------------------------eEEEEEEcCCccEee
Confidence 1237999999999999976642 45677777666532
Q ss_pred eec-CCCCCCccceEEEecCCCCCccEEEEEee
Q 005093 176 AVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGW 207 (715)
Q Consensus 176 ~l~-~~~~~~~~~~~~~spdg~~~~~~i~~~~~ 207 (715)
... |+. ...+.+++||||++. |.-+++
T Consensus 211 eFRRG~~-~~~IySL~Fs~ds~~----L~~sS~ 238 (391)
T KOG2110|consen 211 EFRRGTY-PVSIYSLSFSPDSQF----LAASSN 238 (391)
T ss_pred eeeCCce-eeEEEEEEECCCCCe----EEEecC
Confidence 221 111 335778999999998 777763
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.49 Score=47.20 Aligned_cols=128 Identities=17% Similarity=0.160 Sum_probs=76.9
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCcccc
Q 005093 185 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 264 (715)
Q Consensus 185 ~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 264 (715)
.+.++.|++ .. .+|+...+ -.|-+.||. .++....++.. ....
T Consensus 262 ~Vs~V~w~d--~~----v~yS~SwD--------------HTIk~WDle----------------tg~~~~~~~~~-ksl~ 304 (423)
T KOG0313|consen 262 PVSSVVWSD--AT----VIYSVSWD--------------HTIKVWDLE----------------TGGLKSTLTTN-KSLN 304 (423)
T ss_pred ceeeEEEcC--CC----ceEeeccc--------------ceEEEEEee----------------cccceeeeecC-ccee
Confidence 577889998 34 56665221 257788871 33444455543 3466
Q ss_pred ceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCC
Q 005093 265 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 344 (715)
Q Consensus 265 ~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg 344 (715)
....+|+.+.|+-.+.+ .+|.++|-.++........ |-| +..-+..+.|+|.+
T Consensus 305 ~i~~~~~~~Ll~~gssd-----------r~irl~DPR~~~gs~v~~s---------------~~g-H~nwVssvkwsp~~ 357 (423)
T KOG0313|consen 305 CISYSPLSKLLASGSSD-----------RHIRLWDPRTGDGSVVSQS---------------LIG-HKNWVSSVKWSPTN 357 (423)
T ss_pred EeecccccceeeecCCC-----------CceeecCCCCCCCceeEEe---------------eec-chhhhhheecCCCC
Confidence 68889988877655444 3577788766543211100 111 11124567799999
Q ss_pred CEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 005093 345 CTMLLSSIWGSSQVIISVNVSSGELLRITPAE 376 (715)
Q Consensus 345 ~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 376 (715)
.+.+++...++...||-+.-..+....|....
T Consensus 358 ~~~~~S~S~D~t~klWDvRS~k~plydI~~h~ 389 (423)
T KOG0313|consen 358 EFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN 389 (423)
T ss_pred ceEEEEEecCCeEEEEEeccCCCcceeeccCC
Confidence 99999988888788876554444555665543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.15 Score=55.44 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=25.1
Q ss_pred CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCC
Q 005093 259 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 304 (715)
Q Consensus 259 ~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~ 304 (715)
-........+||||++++.+...+ .++-++|+.+.+
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS----------~tVSVIDv~k~k 354 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLS----------PTVTVIDVRKLD 354 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCC----------CcEEEEEChhhh
Confidence 344567789999999886555443 357888877643
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.095 Score=53.28 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=49.8
Q ss_pred ccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 005093 291 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 370 (715)
Q Consensus 291 ~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 370 (715)
....|+++++..+++.......+.+.+.. +......|- ..++-.|..+ ++.+.++.|..+||.+.-.-....
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~----~~~~~~~Wi---tsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPEL----DPVNGNFWI---TSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCc----cccccccce---eeeEecccCc-eEEecCCCCceEEEEecCCccccc
Confidence 34468888887776644433333322211 000000121 2223344444 888888899999999875434444
Q ss_pred EecCCC--CCceeEEEeecCCEEEEE
Q 005093 371 RITPAE--SNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 371 ~l~~~~--~~~~~~~~s~~~~~l~~~ 394 (715)
.+..-. +-+....|+.+|.++++.
T Consensus 418 ~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 418 LLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred eeeecccccEEEEEEEccCCCEEEEe
Confidence 443322 222334567777766554
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.013 Score=62.86 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=73.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc---------ch--------HHHHHHHhCCcEEEEEcCCCCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---------YS--------KSLAFLSSVGYSLLIVNYRGSLG 523 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~---------~~--------~~~~~la~~G~~vi~~d~rG~~~ 523 (715)
.+..+.-|++...+ ..++.|+||++.|||+.+.... .. ....-+ .+-..++.+|.+-..|
T Consensus 22 ~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW-~~~an~l~iD~PvGtG 98 (415)
T PF00450_consen 22 ENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSW-NKFANLLFIDQPVGTG 98 (415)
T ss_dssp TTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-G-GGTSEEEEE--STTST
T ss_pred CCcEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccc-ccccceEEEeecCceE
Confidence 45677777776553 5577899999999998653210 00 000011 1226788899775555
Q ss_pred CchhhhhcCCCCCCccchhhHHHHHHHHHH-cCCCCCceEEEEEeChhHHHHHHHHhh----C------CCceeEEEecC
Q 005093 524 FGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARN 592 (715)
Q Consensus 524 ~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~a~~----~------p~~~~~~v~~~ 592 (715)
|.................+|+..++..... .+.....+++|+|.|+||..+-.+|.. . +-.++++++.+
T Consensus 99 fS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGn 178 (415)
T PF00450_consen 99 FSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGN 178 (415)
T ss_dssp T-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEES
T ss_pred EeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecC
Confidence 544322111001112235566666554433 344566799999999999987666532 2 23589999999
Q ss_pred Ccchh
Q 005093 593 PLCNL 597 (715)
Q Consensus 593 ~~~~~ 597 (715)
|+++.
T Consensus 179 g~~dp 183 (415)
T PF00450_consen 179 GWIDP 183 (415)
T ss_dssp E-SBH
T ss_pred ccccc
Confidence 98765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.037 Score=55.04 Aligned_cols=152 Identities=10% Similarity=0.055 Sum_probs=93.1
Q ss_pred CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEE----ecCccccccccCCCcccceeecCCCCeEEE
Q 005093 38 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF----HVPQTVHGSVYADGWFEGISWNSDETLIAY 113 (715)
Q Consensus 38 ~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~wSpDg~~la~ 113 (715)
++.+.+.+....|.|-...+.-. -.++-..-+|.++.++..+.++ .+. +....| .-+.|.|--..+++
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIAS-gSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrV------g~V~wHPtA~NVLl 148 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIAS-GSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRV------GLVQWHPTAPNVLL 148 (472)
T ss_pred ccCccccccccccCccCCceeec-CCCCceEEEEECCCcccccCcccceEEEe-ecceeE------EEEeecccchhhHh
Confidence 55667889999999977665422 2221333466666665544433 221 111222 67889998777766
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEec
Q 005093 114 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 193 (715)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~sp 193 (715)
.+. ..+.+.+|++.||+...- ......+.++.|+-
T Consensus 149 sag-------------------------------------------~Dn~v~iWnv~tgeali~--l~hpd~i~S~sfn~ 183 (472)
T KOG0303|consen 149 SAG-------------------------------------------SDNTVSIWNVGTGEALIT--LDHPDMVYSMSFNR 183 (472)
T ss_pred hcc-------------------------------------------CCceEEEEeccCCceeee--cCCCCeEEEEEecc
Confidence 532 238899999999985432 23555788999999
Q ss_pred CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecC-CCCc-cccceeEcCC
Q 005093 194 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESIS-SAFFPRFSPD 271 (715)
Q Consensus 194 dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~-~~~~~~~spd 271 (715)
||.. ++.+. ++-.|-++|. ..++...-- .+.+ ......|..+
T Consensus 184 dGs~----l~Ttc---------------kDKkvRv~dp-----------------r~~~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 184 DGSL----LCTTC---------------KDKKVRVIDP-----------------RRGTVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred CCce----eeeec---------------ccceeEEEcC-----------------CCCcEeeecccccCCCcceeEEecc
Confidence 9998 77765 2235777775 444433222 2333 2556788888
Q ss_pred CCeEEEEe
Q 005093 272 GKFLVFLS 279 (715)
Q Consensus 272 g~~l~~~~ 279 (715)
|+ |+-+.
T Consensus 228 g~-i~tTG 234 (472)
T KOG0303|consen 228 GK-IFTTG 234 (472)
T ss_pred Cc-eeeec
Confidence 88 54443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.15 Score=49.62 Aligned_cols=171 Identities=11% Similarity=0.184 Sum_probs=86.4
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC
Q 005093 100 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 179 (715)
Q Consensus 100 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~ 179 (715)
++++|.||.+.|+.+.+.. ..|+.+++++.-.+.+.
T Consensus 25 SGLTy~pd~~tLfaV~d~~-------------------------------------------~~i~els~~G~vlr~i~- 60 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEP-------------------------------------------GEIYELSLDGKVLRRIP- 60 (248)
T ss_dssp EEEEEETTTTEEEEEETTT-------------------------------------------TEEEEEETT--EEEEEE-
T ss_pred cccEEcCCCCeEEEEECCC-------------------------------------------CEEEEEcCCCCEEEEEe-
Confidence 8999999999998876542 66899998765555553
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-----ce
Q 005093 180 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----VV 254 (715)
Q Consensus 180 ~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 254 (715)
..+......+++.-+|+ ++.+. .++..|+.++++. .+.. .+
T Consensus 61 l~g~~D~EgI~y~g~~~-----~vl~~--------------Er~~~L~~~~~~~---------------~~~~~~~~~~~ 106 (248)
T PF06977_consen 61 LDGFGDYEGITYLGNGR-----YVLSE--------------ERDQRLYIFTIDD---------------DTTSLDRADVQ 106 (248)
T ss_dssp -SS-SSEEEEEE-STTE-----EEEEE--------------TTTTEEEEEEE-------------------TT--EEEEE
T ss_pred CCCCCCceeEEEECCCE-----EEEEE--------------cCCCcEEEEEEec---------------cccccchhhce
Confidence 23333455677776554 34333 2445788877620 1111 11
Q ss_pred ecC-----CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccc
Q 005093 255 NLT-----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 329 (715)
Q Consensus 255 ~lt-----~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g 329 (715)
.++ .........+|+|.++.|+.+..+.. ..||.++...+.. .+.... ...+. . ..
T Consensus 107 ~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P---------~~l~~~~~~~~~~-~~~~~~--~~~~~---~----~~ 167 (248)
T PF06977_consen 107 KISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP---------KRLYEVNGFPGGF-DLFVSD--DQDLD---D----DK 167 (248)
T ss_dssp EEE---S---SS--EEEEEETTTTEEEEEEESSS---------EEEEEEESTT-SS---EEEE---HHHH--------HT
T ss_pred EEecccccCCCcceEEEEEcCCCCEEEEEeCCCC---------hhhEEEccccCcc-ceeecc--ccccc---c----cc
Confidence 121 12234788999999999988876542 3477776522111 110000 00000 0 00
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 005093 330 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 370 (715)
Q Consensus 330 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 370 (715)
.....+..+.+.|....+++.+... ..|..+|. +|++.
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es--~~l~~~d~-~G~~~ 205 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDES--RLLLELDR-QGRVV 205 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTT--TEEEEE-T-T--EE
T ss_pred ceeccccceEEcCCCCeEEEEECCC--CeEEEECC-CCCEE
Confidence 0111334555677766787776543 47888886 45543
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.057 Score=51.93 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=77.0
Q ss_pred ceEEEEEccCCceEe-ecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 162 PSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~-l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
..|-++|.......+ .+-......+..++|.|.|.. |+..+.. .-+.++|+
T Consensus 194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef----llvgTdH---------------p~~rlYdv--------- 245 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF----LLVGTDH---------------PTLRLYDV--------- 245 (430)
T ss_pred CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCce----EEEecCC---------------CceeEEec---------
Confidence 557777775433221 110233346778899999997 7765522 13445554
Q ss_pred hhhhccCCCCCCceecCC----CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeee
Q 005093 241 LELKESSSEDLPVVNLTE----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 316 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~----~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~ 316 (715)
++-+.-.-.+ ..+.+..+.+|+.|+ |+.+...+ | .|.++|--+ .+.+..-.
T Consensus 246 --------~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkD----G------~IklwDGVS--~rCv~t~~---- 300 (430)
T KOG0640|consen 246 --------NTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKD----G------AIKLWDGVS--NRCVRTIG---- 300 (430)
T ss_pred --------cceeEeeecCcccccccceeEEEecCCcc-EEEEeccC----C------cEEeecccc--HHHHHHHH----
Confidence 3333211111 233578899999998 55555443 2 366666332 22221100
Q ss_pred eceecCCCCCcccccc-CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 005093 317 PVVQCAEGDCFPGLYS-SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 376 (715)
Q Consensus 317 ~~~~~~~~~~~~g~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 376 (715)
..+. ..+....|+.||++|+- +..+....|| .+.||+....-.+.
T Consensus 301 ------------~AH~gsevcSa~Ftkn~kyiLs-SG~DS~vkLW--Ei~t~R~l~~YtGA 346 (430)
T KOG0640|consen 301 ------------NAHGGSEVCSAVFTKNGKYILS-SGKDSTVKLW--EISTGRMLKEYTGA 346 (430)
T ss_pred ------------hhcCCceeeeEEEccCCeEEee-cCCcceeeee--eecCCceEEEEecC
Confidence 0011 13456679999986654 3333444455 55577766554444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.095 Score=55.69 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=38.9
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEee
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 116 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~ 116 (715)
.+...++-|||+.|.....+ .++..+ +|+....+-.....+ ..++||.||+++|-.+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-----rlliyD~ndG~llqtLKgHKDtV----------ycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-----RLLVYDTSDGTLLQPLKGHKDTV----------YCVAYAKDGKRFASGSA 73 (1081)
T ss_pred chheeEECCCCceEEEecCC-----EEEEEeCCCcccccccccccceE----------EEEEEccCCceeccCCC
Confidence 47788999999999876443 466666 444444433222222 68999999998876543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.029 Score=58.04 Aligned_cols=77 Identities=23% Similarity=0.267 Sum_probs=49.3
Q ss_pred cCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCC
Q 005093 256 LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSI 335 (715)
Q Consensus 256 lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~ 335 (715)
..-..+.+...+|||||++||.++.+. . |.++|..+.+..-+.. -|-.+.
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSqDG---------f--LRvF~fdt~eLlg~mk-------------------SYFGGL 335 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQDG---------F--LRIFDFDTQELLGVMK-------------------SYFGGL 335 (636)
T ss_pred eEeccccccceeEcCCCceEEEEecCc---------e--EEEeeccHHHHHHHHH-------------------hhccce
Confidence 333455788899999999999999873 2 6666766643321111 133456
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEE
Q 005093 336 LSNPWLSDGCTMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 336 ~~~~~~~dg~~l~~~~~~~~~~~l~~~d 363 (715)
-.++|||||++|+. .-+++-..+|.+-
T Consensus 336 LCvcWSPDGKyIvt-GGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVT-GGEDDLVTVWSFE 362 (636)
T ss_pred EEEEEcCCccEEEe-cCCcceEEEEEec
Confidence 67899999996654 4444445566553
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0093 Score=59.36 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=67.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCc--EEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~--~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
...-++||+||..... ...-...++.....|+ +++.+-.+-.+ .-+.-.....-..+...++...+++|.+...
T Consensus 114 ~~k~vlvFvHGfNntf-~dav~R~aqI~~d~g~~~~pVvFSWPS~g---~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~ 189 (377)
T COG4782 114 SAKTVLVFVHGFNNTF-EDAVYRTAQIVHDSGNDGVPVVFSWPSRG---SLLGYNYDRESTNYSRPALERLLRYLATDKP 189 (377)
T ss_pred CCCeEEEEEcccCCch-hHHHHHHHHHHhhcCCCcceEEEEcCCCC---eeeecccchhhhhhhHHHHHHHHHHHHhCCC
Confidence 4567899999943321 2222334444444443 55556555311 1110001111222346678888888888753
Q ss_pred CCCceEEEEEeChhHHHHHHHHhh----C----CCceeEEEecCCcchh
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQ----A----PDKFVAAAARNPLCNL 597 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~----~----p~~~~~~v~~~~~~~~ 597 (715)
..+|.|++||||.++++.++.+ . +.+|+-+|+.+|-.|.
T Consensus 190 --~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 190 --VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred --CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 5789999999999999876543 1 3467888888886654
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.17 Score=50.09 Aligned_cols=68 Identities=12% Similarity=0.042 Sum_probs=38.0
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEE
Q 005093 334 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVK 405 (715)
Q Consensus 334 ~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~ 405 (715)
.+..++|+|.|++| ++..++..-++| |+++++.....+... +-...++.+....+.+..+-+++..++
T Consensus 336 wVr~~af~p~Gkyi-~ScaDDktlrvw--dl~~~~cmk~~~ah~-hfvt~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 336 WVRGVAFSPGGKYI-LSCADDKTLRVW--DLKNLQCMKTLEAHE-HFVTSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred eeeeeEEcCCCeEE-EEEecCCcEEEE--EeccceeeeccCCCc-ceeEEEecCCCCceEEeccccceeeee
Confidence 46788899999855 555556555555 665666555444322 223344444444455555555555443
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.01 Score=66.23 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=46.1
Q ss_pred eEEEEecccccchhhhhhhhccCCCCCCceec-CCCCccccceeEcCCCCeEEE-EecCCCCCCCCccccceeEeeecCC
Q 005093 225 ALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVF-LSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~~~~spdg~~l~~-~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
+|.++|. .+...+.+ +.....+.+|.|||||++|+| ++.+.- .+...||+.+|.+
T Consensus 330 ~L~~~D~-----------------dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~------~g~s~vYv~~L~t 386 (912)
T TIGR02171 330 NLAYIDY-----------------TKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGL------PGKSSVYVRNLNA 386 (912)
T ss_pred eEEEEec-----------------CCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCC------CCCceEEEEehhc
Confidence 7999996 66777777 777778999999999999999 655431 2456799999988
Q ss_pred CCCC
Q 005093 303 NGNF 306 (715)
Q Consensus 303 ~~~~ 306 (715)
.+..
T Consensus 387 ~~~~ 390 (912)
T TIGR02171 387 SGSG 390 (912)
T ss_pred cCCC
Confidence 6653
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.02 Score=59.17 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=46.7
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
.+.++.+.+..+.|||||++||.++.+ .-|.++|.+
T Consensus 285 ~w~~~~g~in~f~FS~DG~~LA~VSqD--------------------------------------------GfLRvF~fd 320 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSPDGKYLATVSQD--------------------------------------------GFLRIFDFD 320 (636)
T ss_pred eeEeccccccceeEcCCCceEEEEecC--------------------------------------------ceEEEeecc
Confidence 345566677899999999999998654 447788887
Q ss_pred CCceEeecCCCCCC--ccceEEEecCCCCCccEEEEEe
Q 005093 171 SGEVQAVKGIPKSL--SVGQVVWAPLNEGLHQYLVFVG 206 (715)
Q Consensus 171 ~g~~~~l~~~~~~~--~~~~~~~spdg~~~~~~i~~~~ 206 (715)
+.++.-+. .++ ...-+.||||||. |+.-+
T Consensus 321 t~eLlg~m---kSYFGGLLCvcWSPDGKy----IvtGG 351 (636)
T KOG2394|consen 321 TQELLGVM---KSYFGGLLCVCWSPDGKY----IVTGG 351 (636)
T ss_pred HHHHHHHH---HhhccceEEEEEcCCccE----EEecC
Confidence 77766551 111 3446799999997 77543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.1 Score=51.58 Aligned_cols=88 Identities=8% Similarity=0.089 Sum_probs=51.5
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|.+||.+ |.+... +.+.......++|-|.|.. |+...... ..++|..+.-+ +
T Consensus 222 RkirV~drE-g~Lns~-se~~~~l~~~LsWkPsgs~----iA~iq~~~------------sd~~IvffErN-------G- 275 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNST-SEPVEGLQHSLSWKPSGSL----IAAIQCKT------------SDSDIVFFERN-------G- 275 (1265)
T ss_pred eeEEEeccc-chhhcc-cCcccccccceeecCCCCe----EeeeeecC------------CCCcEEEEecC-------C-
Confidence 678899887 655444 1233345668899999998 77665221 22356666520 0
Q ss_pred hhhccCCCCCCcee-cCCCCccccceeEcCCCCeEEEEecC
Q 005093 242 ELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 242 ~~~~~~~~~~~~~~-lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
...|+... .......+....|+.++.-|+.....
T Consensus 276 ------L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 276 ------LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred ------ccccccccCCcccccchheeeecCCCCceeeeecc
Confidence 02222211 11222238889999999988875543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.31 Score=49.58 Aligned_cols=141 Identities=14% Similarity=0.099 Sum_probs=81.4
Q ss_pred CceEEEEEccCCceE--eec----CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccc
Q 005093 161 QPSLFVININSGEVQ--AVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 234 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~--~l~----~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 234 (715)
...+.+||+...... .+. -...+..+.+++|.|-.+. +.-+.. ..+.|.+.|+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~----lF~sv~--------------dd~~L~iwD~--- 257 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED----LFGSVG--------------DDGKLMIWDT--- 257 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh----hheeec--------------CCCeEEEEEc---
Confidence 477889988654321 110 0222335778899997776 433331 2246888886
Q ss_pred cchhhhhhhhccCCCCC--C-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccc
Q 005093 235 KSEASELELKESSSEDL--P-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 311 (715)
Q Consensus 235 ~~~~~~~~~~~~~~~~~--~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~ 311 (715)
.++ + ........+.+...+|+|-+..|+-+...+ ..|.++|+.+-.....+..
T Consensus 258 --------------R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D----------~tV~LwDlRnL~~~lh~~e 313 (422)
T KOG0264|consen 258 --------------RSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD----------KTVALWDLRNLNKPLHTFE 313 (422)
T ss_pred --------------CCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC----------CcEEEeechhcccCceecc
Confidence 322 1 222233355678899999877765444332 3588888765332111110
Q ss_pred eeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 005093 312 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 364 (715)
Q Consensus 312 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~ 364 (715)
. +...+..+.|+|+...++.++..+++..+|-++-
T Consensus 314 ~------------------H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 314 G------------------HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred C------------------CCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 0 1124567789999999999888666555655443
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0088 Score=62.41 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=65.4
Q ss_pred CCcEEEEEcCCCCCCCC-ccchHHHH-HHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcC--
Q 005093 480 CDPLIVVLHGGPHSVSL-SSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-- 555 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~-~~~~~~~~-~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~-- 555 (715)
..-+|+.+|||++.... ........ +..+.|.-|+.+||...++ .......+++.-+.-|++++.
T Consensus 395 S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE-----------aPFPRaleEv~fAYcW~inn~al 463 (880)
T KOG4388|consen 395 SRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE-----------APFPRALEEVFFAYCWAINNCAL 463 (880)
T ss_pred CceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC-----------CCCCcHHHHHHHHHHHHhcCHHH
Confidence 45578999998876532 23333333 3356799999999987543 455556899999999999862
Q ss_pred -CCCCceEEEEEeChhHHHHHHHHhh
Q 005093 556 -LANPSKVTVVGGSHGGFLTTHLIGQ 580 (715)
Q Consensus 556 -~~d~~~i~l~G~S~GG~~a~~~a~~ 580 (715)
....+||+++|.|+||.+.+-.+.+
T Consensus 464 lG~TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 464 LGSTGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred hCcccceEEEeccCCCcceeehhHHH
Confidence 2467999999999999987665543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.89 Score=44.24 Aligned_cols=61 Identities=26% Similarity=0.322 Sum_probs=36.7
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 343 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 343 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
++ .+++....+. ++.+|+.+|+... ...... .......+++.+++.. . -..|+.+|+.+++
T Consensus 173 ~~-~v~~~~~~g~---~~~~d~~tg~~~w-~~~~~~-~~~~~~~~~~~l~~~~-~---~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 173 DG-RVYVSSGDGR---VVAVDLATGEKLW-SKPISG-IYSLPSVDGGTLYVTS-S---DGRLYALDLKTGK 233 (238)
T ss_dssp TT-EEEEECCTSS---EEEEETTTTEEEE-EECSS--ECECEECCCTEEEEEE-T---TTEEEEEETTTTE
T ss_pred CC-EEEEEcCCCe---EEEEECCCCCEEE-EecCCC-ccCCceeeCCEEEEEe-C---CCEEEEEECCCCC
Confidence 44 5666544332 6777999998654 222221 1122566777777666 2 3679999987764
|
... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.68 Score=45.00 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=42.4
Q ss_pred CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCe
Q 005093 38 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL 110 (715)
Q Consensus 38 ~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~ 110 (715)
......+++..+|+||.+.|.-+.+ ..+++..+...|+..+...++. .++. ..+.|.-+|++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g-~~Dp-------E~Ieyig~n~f 142 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTG-FSDP-------ETIEYIGGNQF 142 (316)
T ss_pred cccccccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccc-cCCh-------hHeEEecCCEE
Confidence 3334466899999999999876644 5568888888888877776643 2111 46677776653
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.19 Score=55.05 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=60.4
Q ss_pred cCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 160 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 160 ~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
....|.++|..|.++.+.- ......+.++.|||||+. |+..+ -++.|.++|+
T Consensus 554 ddf~I~vvD~~t~kvvR~f-~gh~nritd~~FS~DgrW----lisas---------------mD~tIr~wDl-------- 605 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREF-WGHGNRITDMTFSPDGRW----LISAS---------------MDSTIRTWDL-------- 605 (910)
T ss_pred CceeEEEEEchhhhhhHHh-hccccceeeeEeCCCCcE----EEEee---------------cCCcEEEEec--------
Confidence 3478999999877654431 223346889999999999 88776 3346888997
Q ss_pred hhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 240 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 240 ~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
.++...--..-+..+.+.+|||+|++||-+...
T Consensus 606 ---------pt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 606 ---------PTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred ---------cCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 555544333334567889999999999977655
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.16 Score=55.64 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=24.8
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
..+.+|++...++..- .+-...++.+.|+|||+.
T Consensus 432 ~KvRiWsI~d~~Vv~W--~Dl~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 432 GKVRLWSISDKKVVDW--NDLRDLITAVCYSPDGKG 465 (712)
T ss_pred cceEEeecCcCeeEee--hhhhhhheeEEeccCCce
Confidence 5577888866666554 344456889999999997
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.26 Score=47.92 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=35.7
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET 109 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~ 109 (715)
..++..+|.||.++|+.+.+ +...++.+...|+..+...+.. . + -+.++.+.-+|+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d---~~~~i~els~~G~vlr~i~l~g-~-~------D~EgI~y~g~~~ 77 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQD---EPGEIYELSLDGKVLRRIPLDG-F-G------DYEGITYLGNGR 77 (248)
T ss_dssp S-EEEEEEETTTTEEEEEET---TTTEEEEEETT--EEEEEE-SS---S------SEEEEEE-STTE
T ss_pred CCccccEEcCCCCeEEEEEC---CCCEEEEEcCCCCEEEEEeCCC-C-C------CceeEEEECCCE
Confidence 45899999999999987766 3457888886677666665532 1 1 126788877664
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.011 Score=48.90 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=47.5
Q ss_pred CCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 648 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
..|+|++.++.|+..|.+.++.+.++|.. .+++..++.||+... ....-+.+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 48999999999999999999999888854 689999999998764 222345666777775
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.57 Score=46.99 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=52.7
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCCCccc
Q 005093 185 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSA 263 (715)
Q Consensus 185 ~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~ 263 (715)
.+.-+.|.|--.. +++++. .++.|...++ .+|+. ..|. ++..+
T Consensus 133 rVg~V~wHPtA~N----VLlsag--------------~Dn~v~iWnv-----------------~tgeali~l~-hpd~i 176 (472)
T KOG0303|consen 133 RVGLVQWHPTAPN----VLLSAG--------------SDNTVSIWNV-----------------GTGEALITLD-HPDMV 176 (472)
T ss_pred eEEEEeecccchh----hHhhcc--------------CCceEEEEec-----------------cCCceeeecC-CCCeE
Confidence 4667899998887 877762 2236777776 55553 3444 67779
Q ss_pred cceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 264 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 264 ~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
.+..|+-||..|+-++.+. .|.++|..+++.
T Consensus 177 ~S~sfn~dGs~l~TtckDK-----------kvRv~dpr~~~~ 207 (472)
T KOG0303|consen 177 YSMSFNRDGSLLCTTCKDK-----------KVRVIDPRRGTV 207 (472)
T ss_pred EEEEeccCCceeeeecccc-----------eeEEEcCCCCcE
Confidence 9999999999998776653 478888766543
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.022 Score=55.40 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=64.8
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHH-HHHHHHcCCCCCc
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 560 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~-i~~l~~~~~~d~~ 560 (715)
|.++++|++.+. ...|..+...|... ..|+..+.+|.+.. ......++++.+. ++.+.+.. ...
T Consensus 1 ~pLF~fhp~~G~--~~~~~~L~~~l~~~-~~v~~l~a~g~~~~----------~~~~~~l~~~a~~yv~~Ir~~Q--P~G 65 (257)
T COG3319 1 PPLFCFHPAGGS--VLAYAPLAAALGPL-LPVYGLQAPGYGAG----------EQPFASLDDMAAAYVAAIRRVQ--PEG 65 (257)
T ss_pred CCEEEEcCCCCc--HHHHHHHHHHhccC-ceeeccccCccccc----------ccccCCHHHHHHHHHHHHHHhC--CCC
Confidence 568899996544 34566677777666 88999999984321 1112235555544 33444321 246
Q ss_pred eEEEEEeChhHHHHHHHHhhC---CCceeEEEecCCcch
Q 005093 561 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 596 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~~ 596 (715)
++.|.|+|+||.+|.-+|.+. ...++.++++.++..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 899999999999999888653 345666676666554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.074 Score=60.19 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=98.0
Q ss_pred CceEEEEEccCCceEeec-C-CCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh
Q 005093 161 QPSLFVININSGEVQAVK-G-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~-~-~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 238 (715)
...|++||++.-+ +..+ + ......+..++|.-.-.. |+-++... +...++|+
T Consensus 138 ~geI~iWDlnn~~-tP~~~~~~~~~~eI~~lsWNrkvqh----ILAS~s~s--------------g~~~iWDl------- 191 (1049)
T KOG0307|consen 138 DGEILIWDLNKPE-TPFTPGSQAPPSEIKCLSWNRKVSH----ILASGSPS--------------GRAVIWDL------- 191 (1049)
T ss_pred CCcEEEeccCCcC-CCCCCCCCCCcccceEeccchhhhH----HhhccCCC--------------CCceeccc-------
Confidence 3679999997632 2331 0 111224556677766665 55444211 13445555
Q ss_pred hhhhhhccCCCCCCceecCCCCc--cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCC--CCCCcccceee
Q 005093 239 SELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN--GNFSSLEKIVD 314 (715)
Q Consensus 239 ~~~~~~~~~~~~~~~~~lt~~~~--~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~--~~~~lt~~~~~ 314 (715)
+....+..++...+ ....+.|.||+-.-+.+...++ ....|-++|+... -.+.++
T Consensus 192 ---------r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd-------~~PviqlWDlR~assP~k~~~----- 250 (1049)
T KOG0307|consen 192 ---------RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD-------SAPVIQLWDLRFASSPLKILE----- 250 (1049)
T ss_pred ---------cCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC-------CCceeEeecccccCCchhhhc-----
Confidence 13344555554433 4788999999866555544432 1223555564332 122222
Q ss_pred eeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCC-ceeEEEeecCCEEEE
Q 005093 315 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN-FSWSLLTLDGDNIIA 393 (715)
Q Consensus 315 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~-~~~~~~s~~~~~l~~ 393 (715)
.|..++-.+.|.+.+..+++++..+ .+++.+|..||++.-=.+..++ +....|++..-.+ +
T Consensus 251 ---------------~H~~GilslsWc~~D~~lllSsgkD--~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~-~ 312 (1049)
T KOG0307|consen 251 ---------------GHQRGILSLSWCPQDPRLLLSSGKD--NRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSV-M 312 (1049)
T ss_pred ---------------ccccceeeeccCCCCchhhhcccCC--CCeeEecCCCceEeeecCCCCcceeeeeecCCCcch-h
Confidence 1334667788988876677766543 5788899999887654443331 2223555543322 2
Q ss_pred EEeCCCCCCeEEEEe
Q 005093 394 VSSSPVDVPQVKYGY 408 (715)
Q Consensus 394 ~~~~~~~p~~l~~~~ 408 (715)
..++....-+||-+.
T Consensus 313 A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 313 AAASFDGKISIYSLQ 327 (1049)
T ss_pred hhheeccceeeeeee
Confidence 334445555555433
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.54 Score=48.67 Aligned_cols=108 Identities=8% Similarity=-0.010 Sum_probs=64.6
Q ss_pred eeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 294 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 294 ~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
+||-+-+...+.+.+|.+.+..+.+|...+- .+.-..........|.|.| .+.+-+. . .+.+.+|..+.....+-
T Consensus 370 elwgla~hps~~q~~T~gqdk~v~lW~~~k~-~wt~~~~d~~~~~~fhpsg-~va~Gt~-~--G~w~V~d~e~~~lv~~~ 444 (626)
T KOG2106|consen 370 ELWGLATHPSKNQLLTCGQDKHVRLWNDHKL-EWTKIIEDPAECADFHPSG-VVAVGTA-T--GRWFVLDTETQDLVTIH 444 (626)
T ss_pred ceeeEEcCCChhheeeccCcceEEEccCCce-eEEEEecCceeEeeccCcc-eEEEeec-c--ceEEEEecccceeEEEE
Confidence 5666666556666777777777777762221 1111111233455688888 4444332 2 37788899887777776
Q ss_pred CCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 005093 374 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 408 (715)
Q Consensus 374 ~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~ 408 (715)
......+...++++|..++.-+ .+.--.||+++
T Consensus 445 ~d~~~ls~v~ysp~G~~lAvgs--~d~~iyiy~Vs 477 (626)
T KOG2106|consen 445 TDNEQLSVVRYSPDGAFLAVGS--HDNHIYIYRVS 477 (626)
T ss_pred ecCCceEEEEEcCCCCEEEEec--CCCeEEEEEEC
Confidence 6666678889999998776543 22333344444
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.023 Score=58.47 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=67.0
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHhCCcE---EEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 483 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 483 ~vv~iHGg~~~~~~~~~~~~~~~la~~G~~---vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
.++++||.... ...+..+...++..|+. +..+++.+.... .......+.+.+-|+.+.... ..
T Consensus 61 pivlVhG~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~ql~~~V~~~l~~~--ga 126 (336)
T COG1075 61 PIVLVHGLGGG--YGNFLPLDYRLAILGWLTNGVYAFELSGGDGT----------YSLAVRGEQLFAYVDEVLAKT--GA 126 (336)
T ss_pred eEEEEccCcCC--cchhhhhhhhhcchHHHhcccccccccccCCC----------ccccccHHHHHHHHHHHHhhc--CC
Confidence 58899996332 34555555567777777 777777753111 111122455555566555553 34
Q ss_pred ceEEEEEeChhHHHHHHHHhhCC--CceeEEEecCCcch
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLCN 596 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p--~~~~~~v~~~~~~~ 596 (715)
.++.++||||||..+.+++...+ .+++.++.+++.-.
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~ 165 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPHH 165 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCCC
Confidence 88999999999999999988887 78888888776543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1 Score=43.41 Aligned_cols=204 Identities=14% Similarity=0.079 Sum_probs=108.1
Q ss_pred EEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCccc
Q 005093 70 QFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 149 (715)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (715)
+..+...|+....+.++..- .++.++|--.+-.+.+.++
T Consensus 51 ~a~~~eaGk~v~~~~lpaR~----------Hgi~~~p~~~ravafARrP------------------------------- 89 (366)
T COG3490 51 AATLSEAGKIVFATALPARG----------HGIAFHPALPRAVAFARRP------------------------------- 89 (366)
T ss_pred EEEEccCCceeeeeeccccc----------CCeecCCCCcceEEEEecC-------------------------------
Confidence 33444667777777777666 4888999876666655543
Q ss_pred CCcCcccCCccCceEEEEEccCCceEee-cCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEE
Q 005093 150 EDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 228 (715)
Q Consensus 150 ~~~g~~~~~~~~~~l~~~~~~~g~~~~l-~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~ 228 (715)
| .--+++|+++....++ .......-...-+|||||+ ++|.+..+-+ +...-|-+
T Consensus 90 ---G--------tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-----~LYATEndfd---------~~rGViGv 144 (366)
T COG3490 90 ---G--------TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-----LLYATENDFD---------PNRGVIGV 144 (366)
T ss_pred ---C--------ceEEEECCCCCcCcEEEecccCceeecccccCCCCc-----EEEeecCCCC---------CCCceEEE
Confidence 1 3357788877654333 2122222355678999999 5665532221 12234556
Q ss_pred EecccccchhhhhhhhccCCCCCCcee---cCCCCccccceeEcCCCCeEEEEecCCCC-------CCCCccccceeEee
Q 005093 229 VRVSLYKSEASELELKESSSEDLPVVN---LTESISSAFFPRFSPDGKFLVFLSAKSSV-------DSGAHSATDSLHRI 298 (715)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---lt~~~~~~~~~~~spdg~~l~~~~~~~~~-------~~g~~~~~~~l~~~ 298 (715)
+|. . ....+ ............|++||+.|+.....-.. .........+|-++
T Consensus 145 Yd~-----------------r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvll 206 (366)
T COG3490 145 YDA-----------------R-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLL 206 (366)
T ss_pred Eec-----------------c-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEE
Confidence 664 1 22222 22233346779999999999876541000 00111223456677
Q ss_pred ecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCC----eeEEEEEECCCCcEEEec
Q 005093 299 DWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS----SQVIISVNVSSGELLRIT 373 (715)
Q Consensus 299 ~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~----~~~l~~~d~~tg~~~~l~ 373 (715)
|..+++... .+... .+...++..+...+||+ ++|...-.+ ..-|.-.-..++..+.+.
T Consensus 207 d~atG~liekh~Lp~----------------~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~ 269 (366)
T COG3490 207 DAATGNLIEKHTLPA----------------SLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLD 269 (366)
T ss_pred eccccchhhhccCch----------------hhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccC
Confidence 755554321 11100 01223556666777886 666554332 223666665555555554
Q ss_pred C
Q 005093 374 P 374 (715)
Q Consensus 374 ~ 374 (715)
.
T Consensus 270 ~ 270 (366)
T COG3490 270 L 270 (366)
T ss_pred C
Confidence 3
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.014 Score=55.87 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCC----CceeEEEecCC
Q 005093 545 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNP 593 (715)
Q Consensus 545 ~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p----~~~~~~v~~~~ 593 (715)
..|++++.+...-.+.+|.+.|||.||.+|.++++..+ +++..+....+
T Consensus 69 ~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 44555554431112346999999999999999988743 46777765554
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.21 Score=50.08 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=45.7
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCcccc
Q 005093 185 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 264 (715)
Q Consensus 185 ~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 264 (715)
.+.+.+|+||+.. +++.+ ..+.++.+|+ ..+.....+..+.....
T Consensus 125 diydL~Ws~d~~~----l~s~s---------------~dns~~l~Dv----------------~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 125 DIYDLAWSPDSNF----LVSGS---------------VDNSVRLWDV----------------HAGQLLAILDDHEHYVQ 169 (434)
T ss_pred chhhhhccCCCce----eeeee---------------ccceEEEEEe----------------ccceeEeeccccccccc
Confidence 4668899999998 88776 2235777776 13444455666677788
Q ss_pred ceeEcCCCCeEEEEecCC
Q 005093 265 FPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 265 ~~~~spdg~~l~~~~~~~ 282 (715)
..+|.|-+++++-.+..+
T Consensus 170 gvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDR 187 (434)
T ss_pred eeecchhhhhhhhhccCc
Confidence 999999999988776654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.77 Score=47.43 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=83.8
Q ss_pred ceEEEEEccCCceE-eecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 162 PSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 162 ~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
..|.+..++++... .++ .+.+..+..+.|||..+. ++-++..+ +.+.++|+
T Consensus 143 Gdiiih~~~t~~~tt~f~-~~sgqsvRll~ys~skr~----lL~~asd~--------------G~VtlwDv--------- 194 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFT-IDSGQSVRLLRYSPSKRF----LLSIASDK--------------GAVTLWDV--------- 194 (673)
T ss_pred CcEEEEecccCcccccee-cCCCCeEEEeecccccce----eeEeeccC--------------CeEEEEec---------
Confidence 56777887776533 232 333445667899999998 77766322 25667775
Q ss_pred hhhhccCCCCCC--ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC-CCcccceeeeee
Q 005093 241 LELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIP 317 (715)
Q Consensus 241 ~~~~~~~~~~~~--~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~-~~lt~~~~~~~~ 317 (715)
++.. ......+......+.|||-...|+ ++-.- ...|+++|...... .+|+
T Consensus 195 --------~g~sp~~~~~~~HsAP~~gicfspsne~l~-vsVG~---------Dkki~~yD~~s~~s~~~l~-------- 248 (673)
T KOG4378|consen 195 --------QGMSPIFHASEAHSAPCRGICFSPSNEALL-VSVGY---------DKKINIYDIRSQASTDRLT-------- 248 (673)
T ss_pred --------cCCCcccchhhhccCCcCcceecCCccceE-EEecc---------cceEEEeecccccccceee--------
Confidence 3333 233444556788999999887664 43221 24699999765332 2222
Q ss_pred ceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 005093 318 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 367 (715)
Q Consensus 318 ~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg 367 (715)
|......++|+++|.+|..... +.+|+.+|+...
T Consensus 249 -------------y~~Plstvaf~~~G~~L~aG~s---~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 249 -------------YSHPLSTVAFSECGTYLCAGNS---KGELIAYDMRST 282 (673)
T ss_pred -------------ecCCcceeeecCCceEEEeecC---CceEEEEecccC
Confidence 2334567889999975544332 348999998643
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.014 Score=56.12 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.4
Q ss_pred CceEEEEEeChhHHHHHHHHhh
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQ 580 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~ 580 (715)
..+|.++|||+||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3689999999999999877653
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=2.1 Score=46.65 Aligned_cols=66 Identities=11% Similarity=-0.005 Sum_probs=40.4
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCe--EEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPI--QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
-.....+.|||++.|||..+.- +..+ +...+ .+|+... +.-.+. ..++.|.+|++.++|...+..
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~~-G~e~y~lr~kdL~tg~~~~--d~i~~~---------~~~~~Wa~d~~~lfYt~~d~~ 196 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDVL-GDEQYTLRFKDLATGEELP--DEITNT---------SGSFAWAADGKTLFYTRLDEN 196 (682)
T ss_pred eeeeeeeeCCCCceEEEEEecc-cccEEEEEEEecccccccc--hhhccc---------ccceEEecCCCeEEEEEEcCC
Confidence 3466788999999999987764 2222 22222 3332211 111111 158999999999999886654
Q ss_pred C
Q 005093 120 P 120 (715)
Q Consensus 120 ~ 120 (715)
.
T Consensus 197 ~ 197 (682)
T COG1770 197 H 197 (682)
T ss_pred C
Confidence 3
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.6 Score=40.78 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=59.3
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
+.+.+.++.-||++.+-. ++.....+| ..|...+.... .+. .+-...-|-|..+++-.
T Consensus 18 gaV~avryN~dGnY~ltc-----GsdrtvrLWNp~rg~liktYsg-hG~--------EVlD~~~s~Dnskf~s~------ 77 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTC-----GSDRTVRLWNPLRGALIKTYSG-HGH--------EVLDAALSSDNSKFASC------ 77 (307)
T ss_pred cceEEEEEccCCCEEEEc-----CCCceEEeecccccceeeeecC-CCc--------eeeeccccccccccccC------
Confidence 678999999999987644 344567778 34444333221 111 11355566666665542
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCcc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
| +...+++||++||++.+-- -.....+..++|..+..
T Consensus 78 --------------------------------G------gDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNeesS---- 114 (307)
T KOG0316|consen 78 --------------------------------G------GDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEESS---- 114 (307)
T ss_pred --------------------------------C------CCceEEEEEcccCeeeeec-ccccceeeEEEecCcce----
Confidence 1 2377999999999865431 12223456677776554
Q ss_pred EEEEEee
Q 005093 201 YLVFVGW 207 (715)
Q Consensus 201 ~i~~~~~ 207 (715)
+++++.
T Consensus 115 -Vv~Sgs 120 (307)
T KOG0316|consen 115 -VVASGS 120 (307)
T ss_pred -EEEecc
Confidence 666543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.7 Score=40.93 Aligned_cols=60 Identities=8% Similarity=0.059 Sum_probs=35.1
Q ss_pred CCCCccccCC---CEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCCC-CceeEEEeecCCEEEEE
Q 005093 335 ILSNPWLSDG---CTMLLSSIWGSSQVIISVNVSSGELLR-ITPAES-NFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 335 ~~~~~~~~dg---~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~~-~~~~~~~s~~~~~l~~~ 394 (715)
++.++|.|.- +.-+.+.+.+++.-||..+.+.+..+. +..... .....++|..|+.|...
T Consensus 210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs 274 (299)
T KOG1332|consen 210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVS 274 (299)
T ss_pred hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEe
Confidence 4567787743 344555667777889988855444332 222222 23446788888766543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.47 Score=51.04 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=69.7
Q ss_pred ccCCC-cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 93 VYADG-WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 93 ~~~~~-~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
+|+-+ .+..+..||+|+.||-....... ....|++|+..+
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~---------------------------------------ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLK---------------------------------------EHAVIRLWNTAN 561 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCc---------------------------------------cceEEEEEeccc
Confidence 34444 45578899999988776543211 236689998765
Q ss_pred Cc-eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC
Q 005093 172 GE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 250 (715)
Q Consensus 172 g~-~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (715)
=. .+.| ...++.+..++|||||+. |+-.+. + |...||..-= ++...
T Consensus 562 W~~~~~L--~~HsLTVT~l~FSpdg~~----LLsvsR-D------------Rt~sl~~~~~--------------~~~~e 608 (764)
T KOG1063|consen 562 WLQVQEL--EGHSLTVTRLAFSPDGRY----LLSVSR-D------------RTVSLYEVQE--------------DIKDE 608 (764)
T ss_pred hhhhhee--cccceEEEEEEECCCCcE----EEEeec-C------------ceEEeeeeec--------------ccchh
Confidence 43 3345 456678899999999998 877652 1 2123443320 00011
Q ss_pred CCceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 251 LPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 251 ~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
-....+..+..-+.+-.|+||+++++-.|.+
T Consensus 609 ~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 609 FRFACLKAHTRIIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred hhhccccccceEEEEcccCcccceeEEecCC
Confidence 1112233344457888999999996655544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.36 Score=51.38 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=22.2
Q ss_pred eEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 225 ALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
.|..+|. +++. .+++.-. .+..+.||+||+.+++++..
T Consensus 127 ~i~~yDw-----------------~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 127 FICFYDW-----------------ETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp EEEEE-T-----------------TT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred CEEEEEh-----------------hHcceeeEEecC--CCcEEEEECCCCEEEEEeCC
Confidence 4889997 5444 3444322 26789999999999999755
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.031 Score=58.90 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=56.1
Q ss_pred cchHHHHHHHhCCcEE----E-E-EcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhH
Q 005093 498 SYSKSLAFLSSVGYSL----L-I-VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 571 (715)
Q Consensus 498 ~~~~~~~~la~~G~~v----i-~-~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG 571 (715)
.|..+++.|++.||.. + + .|.|-+.. ....-...+...|+.+.+.. ..+|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~------------~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPA------------ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchh------------hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCc
Confidence 6788899999988752 2 2 56665322 00111445556666655542 6899999999999
Q ss_pred HHHHHHHhhCCC------ceeEEEecCCcc
Q 005093 572 FLTTHLIGQAPD------KFVAAAARNPLC 595 (715)
Q Consensus 572 ~~a~~~a~~~p~------~~~~~v~~~~~~ 595 (715)
.++..++...+. .+++.|.+++..
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCCC
Confidence 999998877643 478888877654
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.027 Score=61.36 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=33.9
Q ss_pred cchhhHHHHHHHHHHcC----CCC---CceEEEEEeChhHHHHHHHHhhCCCceeEE
Q 005093 539 QDVNDVLTAIDHVIDMG----LAN---PSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 588 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~----~~d---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 588 (715)
...+-+.+||+++.+.. .-+ +..|+|+||||||.+|..++. +|...++.
T Consensus 154 dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t-lkn~~~~s 209 (973)
T KOG3724|consen 154 DQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT-LKNEVQGS 209 (973)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh-hhhhccch
Confidence 34666778888877642 122 667999999999999876665 46544443
|
|
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.47 Score=49.55 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=75.1
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcE-EEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS-LLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~-vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
..+.++- +++-| +.-+.|+.|++-|.-. ...|.. .-.+...|.- .+.-|.|-- |..|. .+.
T Consensus 273 ~~reEi~-yYFnP----GD~KPPL~VYFSGyR~---aEGFEg-y~MMk~Lg~PfLL~~DpRle---GGaFY------lGs 334 (511)
T TIGR03712 273 SKRQEFI-YYFNP----GDFKPPLNVYFSGYRP---AEGFEG-YFMMKRLGAPFLLIGDPRLE---GGAFY------LGS 334 (511)
T ss_pred CCCCeeE-EecCC----cCCCCCeEEeeccCcc---cCcchh-HHHHHhcCCCeEEeeccccc---cceee------eCc
Confidence 3444553 34556 3457799999998322 222322 1223455654 445678863 33331 222
Q ss_pred cch-hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc
Q 005093 539 QDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 602 (715)
Q Consensus 539 ~~~-~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~ 602 (715)
... +.+.+.|....+.-..+.+.+.|.|.|||.+-|+.+++... -.|+|+.-|.+++-.+..
T Consensus 335 ~eyE~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKPL~NLGtiA~ 397 (511)
T TIGR03712 335 DEYEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKPLVNLGTIAS 397 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCC--CceEEEcCcccchhhhhc
Confidence 222 24455555444444578899999999999999999988643 468888889988766544
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.051 Score=67.79 Aligned_cols=100 Identities=12% Similarity=0.118 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.++++||.+.. ...|..+...| ..++.|+.++.+|. +.. ......++++.+.+...+... ....
T Consensus 1068 ~~~l~~lh~~~g~--~~~~~~l~~~l-~~~~~v~~~~~~g~---~~~-------~~~~~~l~~la~~~~~~i~~~-~~~~ 1133 (1296)
T PRK10252 1068 GPTLFCFHPASGF--AWQFSVLSRYL-DPQWSIYGIQSPRP---DGP-------MQTATSLDEVCEAHLATLLEQ-QPHG 1133 (1296)
T ss_pred CCCeEEecCCCCc--hHHHHHHHHhc-CCCCcEEEEECCCC---CCC-------CCCCCCHHHHHHHHHHHHHhh-CCCC
Confidence 3668999996654 34666777766 45699999999983 221 011123555554433333321 1235
Q ss_pred eEEEEEeChhHHHHHHHHhh---CCCceeEEEecCCc
Q 005093 561 KVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPL 594 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~---~p~~~~~~v~~~~~ 594 (715)
++.++|||+||.++..+|.+ .++++..++++.+.
T Consensus 1134 p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~~ 1170 (1296)
T PRK10252 1134 PYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDTW 1170 (1296)
T ss_pred CEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecCC
Confidence 79999999999999999875 46778888777653
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.3 Score=48.98 Aligned_cols=158 Identities=10% Similarity=0.069 Sum_probs=85.2
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccc-cceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEE---ecCc-c
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMT-GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF---HVPQ-T 88 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~ 88 (715)
.+..+..+.++..+.+..+ ....|..+.. -...++++.++.+++|++-.+ .++.+.-+|...+.. .+-. .
T Consensus 155 ~DGsl~~v~Ld~~Gk~~~~-~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G----~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 155 GDGSLLTVTLDADGKEAQK-STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG----NVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp TTSCEEEEEETSTSSEEEE-EEEESSTTTS-B-S--EEETTTTEEEEEBTTS----EEEEEEETTSSEEEEEEEESS-HH
T ss_pred cCCceEEEEECCCCCEeEe-eccccCCCCcccccccceECCCCeEEEEecCC----EEEEEeccCCcccccCcccccCcc
Confidence 4456677778777654422 2223333222 134677788888999988776 688877333332222 1111 0
Q ss_pred c--cccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEE
Q 005093 89 V--HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV 166 (715)
Q Consensus 89 ~--~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (715)
. .+| -. +...-+++++...+|+.+...... .-.......||+
T Consensus 230 e~~~~W-rP-GG~Q~~A~~~~~~rlyvLMh~g~~----------------------------------gsHKdpgteVWv 273 (342)
T PF06433_consen 230 EKADGW-RP-GGWQLIAYHAASGRLYVLMHQGGE----------------------------------GSHKDPGTEVWV 273 (342)
T ss_dssp HHHTTE-EE--SSS-EEEETTTTEEEEEEEE--T----------------------------------T-TTS-EEEEEE
T ss_pred ccccCc-CC-cceeeeeeccccCeEEEEecCCCC----------------------------------CCccCCceEEEE
Confidence 0 011 00 111467777777777776543211 000012378999
Q ss_pred EEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEec
Q 005093 167 ININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 231 (715)
Q Consensus 167 ~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 231 (715)
+|+++++...- .+-...+.++..|.|.+= ++|.... ....|+++|.
T Consensus 274 ~D~~t~krv~R--i~l~~~~~Si~Vsqd~~P----~L~~~~~-------------~~~~l~v~D~ 319 (342)
T PF06433_consen 274 YDLKTHKRVAR--IPLEHPIDSIAVSQDDKP----LLYALSA-------------GDGTLDVYDA 319 (342)
T ss_dssp EETTTTEEEEE--EEEEEEESEEEEESSSS-----EEEEEET-------------TTTEEEEEET
T ss_pred EECCCCeEEEE--EeCCCccceEEEccCCCc----EEEEEcC-------------CCCeEEEEeC
Confidence 99999986543 232334557788998888 8887532 2347999997
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.46 Score=47.30 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=79.6
Q ss_pred ceEEEEEccCCceEeec--CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 162 PSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~--~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
..|++|...+|....-. -+....++.+++|||.-+. +++++..++ .|-+.|.
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~----vfaScS~Dg--------------sIrIWDi-------- 287 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG----VFASCSCDG--------------SIRIWDI-------- 287 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCc----eEEeeecCc--------------eEEEEEe--------
Confidence 66888888877543211 0223457889999999998 777764333 3444443
Q ss_pred hhhhhccCCCCC---CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC-Ccccceeee
Q 005093 240 ELELKESSSEDL---PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDV 315 (715)
Q Consensus 240 ~~~~~~~~~~~~---~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~ 315 (715)
..+ ...........+.-++|+-+-..||+...+ | .|.++||..-+.. .+.
T Consensus 288 ---------Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd-----G------t~~iwDLR~~~~~~pVA------ 341 (440)
T KOG0302|consen 288 ---------RSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD-----G------TLSIWDLRQFKSGQPVA------ 341 (440)
T ss_pred ---------cCCCccceeEeeccCCceeeEEccCCcceeeecCCC-----c------eEEEEEhhhccCCCcce------
Confidence 222 222222334456778998877755544333 1 3666676553321 110
Q ss_pred eeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 005093 316 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 364 (715)
Q Consensus 316 ~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~ 364 (715)
.|. .+...+..+.|+|....++..+..+....||-+.+
T Consensus 342 ----------~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 342 ----------TFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ----------eEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 111 13345678889998887877776665556665443
|
|
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.063 Score=50.68 Aligned_cols=102 Identities=11% Similarity=0.089 Sum_probs=54.4
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhh-----hcCC-----CCCCccchhhHHHHH
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-----QSLP-----GKVGSQDVNDVLTAI 548 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~-----~~~~-----~~~~~~~~~d~~~~i 548 (715)
+..|+.|.+-|-+....... ..+...+..+|++.+.+.-+- ||+.-. ..+. -..|...++++...+
T Consensus 111 K~~~KOG~~a~tgdh~y~rr-~~L~~p~~k~~i~tmvle~pf---Ygqr~p~~q~~~~Le~vtDlf~mG~A~I~E~~~lf 186 (371)
T KOG1551|consen 111 KMADLCLSWALTGDHVYTRR-LVLSKPINKREIATMVLEKPF---YGQRVPEEQIIHMLEYVTDLFKMGRATIQEFVKLF 186 (371)
T ss_pred CcCCeeEEEeecCCceeEee-eeecCchhhhcchheeeeccc---ccccCCHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 45577777776332222222 123445678888888887554 444210 0000 001111223333333
Q ss_pred HHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeE
Q 005093 549 DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 587 (715)
Q Consensus 549 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 587 (715)
.|-.+. .-.+.+|+|-||||.+|..+...++..++-
T Consensus 187 ~Ws~~~---g~g~~~~~g~Smgg~~a~~vgS~~q~Pva~ 222 (371)
T KOG1551|consen 187 TWSSAD---GLGNLNLVGRSMGGDIANQVGSLHQKPVAT 222 (371)
T ss_pred cccccc---CcccceeeeeecccHHHHhhcccCCCCccc
Confidence 332122 246899999999999999998877654443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.15 Score=55.80 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=58.2
Q ss_pred ceEEEEecccccchhhhhhhhccCCCCCCc-eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCC
Q 005093 224 CALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
..|.++|. .+... +.+......+.+..|||||++|+-++.+. .|.++|+.+
T Consensus 556 f~I~vvD~-----------------~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-----------tIr~wDlpt 607 (910)
T KOG1539|consen 556 FSIRVVDV-----------------VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-----------TIRTWDLPT 607 (910)
T ss_pred eeEEEEEc-----------------hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-----------cEEEEeccC
Confidence 36888886 44444 34445666789999999999999888874 389999998
Q ss_pred CCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 005093 303 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 303 ~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d 363 (715)
+.-.-. +.. +....++.++|+|++|..+.. +...||.+-
T Consensus 608 ~~lID~----------~~v----------d~~~~sls~SPngD~LAT~Hv--d~~gIylWs 646 (910)
T KOG1539|consen 608 GTLIDG----------LLV----------DSPCTSLSFSPNGDFLATVHV--DQNGIYLWS 646 (910)
T ss_pred cceeee----------Eec----------CCcceeeEECCCCCEEEEEEe--cCceEEEEE
Confidence 664210 000 001246779999995544333 334566553
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.95 Score=42.25 Aligned_cols=162 Identities=16% Similarity=0.081 Sum_probs=91.6
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|.+|++-.|....-. ......+.+++-+-|+.+ ++-.+ .+-.++++|+
T Consensus 39 rtvrLWNp~rg~liktY-sghG~EVlD~~~s~Dnsk----f~s~G---------------gDk~v~vwDV---------- 88 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTY-SGHGHEVLDAALSSDNSK----FASCG---------------GDKAVQVWDV---------- 88 (307)
T ss_pred ceEEeecccccceeeee-cCCCceeeeccccccccc----cccCC---------------CCceEEEEEc----------
Confidence 56888888777654431 222335667778888888 66544 2236788886
Q ss_pred hhhccCCCCC-CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC--CCc-ccceee---
Q 005093 242 ELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN--FSS-LEKIVD--- 314 (715)
Q Consensus 242 ~~~~~~~~~~-~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~--~~l-t~~~~~--- 314 (715)
++| ..+++-.+.+.+..+.|..+..-++-.+.+. .+..+|..+... .++ ....+.
T Consensus 89 -------~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~-----------s~r~wDCRS~s~ePiQildea~D~V~S 150 (307)
T KOG0316|consen 89 -------NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDS-----------SVRLWDCRSRSFEPIQILDEAKDGVSS 150 (307)
T ss_pred -------ccCeeeeecccccceeeEEEecCcceEEEeccccc-----------eeEEEEcccCCCCccchhhhhcCceeE
Confidence 554 5567777777888899988877555444432 244455443322 221 111111
Q ss_pred ---------------eeeceecCCCCCcccccc-CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC
Q 005093 315 ---------------VIPVVQCAEGDCFPGLYS-SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 375 (715)
Q Consensus 315 ---------------~~~~~~~~~~~~~~g~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~ 375 (715)
.+...+..+...+. .|. ..+..+.+++||+-.+..+.+ ..|-.+|-.||+....-.+
T Consensus 151 i~v~~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~---stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 151 IDVAEHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLD---STLRLLDKETGKLLKSYKG 223 (307)
T ss_pred EEecccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeecc---ceeeecccchhHHHHHhcc
Confidence 11111111110000 121 245678899999977666553 3677789889987655443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.39 Score=49.01 Aligned_cols=169 Identities=13% Similarity=0.084 Sum_probs=96.8
Q ss_pred CceEEEEEccCCce---EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 161 QPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 161 ~~~l~~~~~~~g~~---~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
..+|-+||+.+.+. .....++.+..+..+.|+|-+.. -+|++..+ +.|-..|+
T Consensus 209 ~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~ssSyD--------------GtiR~~D~------ 264 (498)
T KOG4328|consen 209 GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS----QIYSSSYD--------------GTIRLQDF------ 264 (498)
T ss_pred CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh----heeeeccC--------------ceeeeeee------
Confidence 47799999953321 11113566667889999998777 66665333 35777887
Q ss_pred hhhhhhhccCCCCCCceec-CC--CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC--CCcccce
Q 005093 238 ASELELKESSSEDLPVVNL-TE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN--FSSLEKI 312 (715)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l-t~--~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~--~~lt~~~ 312 (715)
+++..+.+ +. ......+..|+.+...++|..+-. .+-++|+.+++. ..+...
T Consensus 265 -----------~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-----------~f~~iD~R~~~s~~~~~~lh- 321 (498)
T KOG4328|consen 265 -----------EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-----------NFNVIDLRTDGSEYENLRLH- 321 (498)
T ss_pred -----------cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-----------ceEEEEeecCCccchhhhhh-
Confidence 44444333 22 334567777888877777776542 245566655443 111111
Q ss_pred eeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-Ee--cCCCCCceeEEEeecCC
Q 005093 313 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RI--TPAESNFSWSLLTLDGD 389 (715)
Q Consensus 313 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l--~~~~~~~~~~~~s~~~~ 389 (715)
..-+..+.+.|-...++.++..++...||-+.--.++.. .| ......+....|||.++
T Consensus 322 -------------------~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 322 -------------------KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred -------------------hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence 112445566666666777777666666775432123322 12 22222445568999998
Q ss_pred EEEEEE
Q 005093 390 NIIAVS 395 (715)
Q Consensus 390 ~l~~~~ 395 (715)
.|+++.
T Consensus 383 tl~TT~ 388 (498)
T KOG4328|consen 383 TLLTTC 388 (498)
T ss_pred ceEeec
Confidence 876654
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.17 Score=53.47 Aligned_cols=138 Identities=18% Similarity=0.188 Sum_probs=81.4
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHH---------HH------hCCcEEEEEcCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAF---------LS------SVGYSLLIVNYRGSL 522 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~---------la------~~G~~vi~~d~rG~~ 522 (715)
....+..+..|++... ......|+||++-|||+.+.........-. |. .+-..++.+|.+-..
T Consensus 52 ~~~~~~~LFYwf~eS~--~~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGv 129 (454)
T KOG1282|consen 52 NESEGRQLFYWFFESE--NNPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGV 129 (454)
T ss_pred CCCCCceEEEEEEEcc--CCCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcC
Confidence 3345777888877654 255668999999999976532211111000 10 111357778877555
Q ss_pred CCchhhhhcCCCCCCccchhhHHHH-HHHHHHcCCCCCceEEEEEeChhHHHHHHHHhh----C-----C-CceeEEEec
Q 005093 523 GFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----A-----P-DKFVAAAAR 591 (715)
Q Consensus 523 ~~g~~~~~~~~~~~~~~~~~d~~~~-i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~----~-----p-~~~~~~v~~ 591 (715)
||.-+-.......-....++|...+ ++|+.+.+....+.+.|.|.|++|..+-.+|.. + | -.+++.++.
T Consensus 130 GFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IG 209 (454)
T KOG1282|consen 130 GFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIG 209 (454)
T ss_pred CccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEec
Confidence 5543221111111112235566655 457776666677899999999999766655532 2 1 257999999
Q ss_pred CCcchh
Q 005093 592 NPLCNL 597 (715)
Q Consensus 592 ~~~~~~ 597 (715)
.|+.+.
T Consensus 210 Ng~td~ 215 (454)
T KOG1282|consen 210 NGLTDP 215 (454)
T ss_pred CcccCc
Confidence 998764
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.92 Score=43.66 Aligned_cols=231 Identities=12% Similarity=0.166 Sum_probs=124.2
Q ss_pred ccccccccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCC-CC-----CCeEEEEe-cC
Q 005093 4 ISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE-NE-----SPIQFELW-SQ 76 (715)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~-~~-----~~~~~~~~-~~ 76 (715)
+...+++.++.. -+++++.++. .|.+.-|....|.+...+-||-.++|+-+..+. ++ +..+|.|+ .-
T Consensus 31 vgTnslK~dNqV---hll~~d~e~s---~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~ 104 (370)
T KOG1007|consen 31 VGTNSLKEDNQV---HLLRLDSEGS---ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPL 104 (370)
T ss_pred EeccccCCccee---EEEEecCccc---hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccccc
Confidence 334445544332 3333555554 233344555668888899999888876654332 11 23466666 22
Q ss_pred Cc-----cEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCC-CCCCc--CCCC---CCCC
Q 005093 77 SQ-----LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GSSDK--DCNS---WKGQ 145 (715)
Q Consensus 77 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~---~~~~ 145 (715)
++ .+.+-.++....+++ ..+-|-|++.+|+-+.+.. ...+.+...+. ..... ...+ .-..
T Consensus 105 ~~S~~~tlE~v~~Ldteavg~i------~cvew~Pns~klasm~dn~---i~l~~l~ess~~vaev~ss~s~e~~~~fts 175 (370)
T KOG1007|consen 105 GQSNSSTLECVASLDTEAVGKI------NCVEWEPNSDKLASMDDNN---IVLWSLDESSKIVAEVLSSESAEMRHSFTS 175 (370)
T ss_pred CccccchhhHhhcCCHHHhCce------eeEEEcCCCCeeEEeccCc---eEEEEcccCcchheeecccccccccceecc
Confidence 32 122223333333444 7899999999998876322 11222221111 00000 1111 1123
Q ss_pred CcccC-CcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCc
Q 005093 146 GDWEE-DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 224 (715)
Q Consensus 146 ~~~~~-~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~ 224 (715)
..|.| .-|..+.......+.-||+.|.+...-........+.++.|.|+-+. ++.+...++
T Consensus 176 g~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~----~lvt~gDdg-------------- 237 (370)
T KOG1007|consen 176 GAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQH----ILVTCGDDG-------------- 237 (370)
T ss_pred cccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceE----EEEEcCCCc--------------
Confidence 44665 22555555566889999997654322210122234678889998777 776663222
Q ss_pred eEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 225 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
-|...|.- ........|..+.-+...++|.|-=.+|+.++..+
T Consensus 238 yvriWD~R---------------~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 238 YVRIWDTR---------------KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred cEEEEecc---------------CCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 24444430 02334455666666789999999888888776554
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.14 Score=54.52 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=47.3
Q ss_pred CcEEEEeeCCCCcCCchHHHHHHHHHHHc---------------C-----C-cEEEEEeCCCCccCCCCCchHHHHHHHH
Q 005093 649 TPTIFLLGAQDLRVPVSNGLQYARALREK---------------G-----V-ETKVIVFPNDVHGIERPQSDFESFLNIG 707 (715)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~---------------g-----~-~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 707 (715)
.++||..|..|.+||.-..+.+.+.|+=. | . ...++.+.++||... ...+.++..+-
T Consensus 348 irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp--~qP~~al~m~~ 425 (433)
T PLN03016 348 YRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE--YRPNETFIMFQ 425 (433)
T ss_pred ceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC--CCHHHHHHHHH
Confidence 69999999999999999999888887511 1 1 266778889999873 34557777777
Q ss_pred HHHHH
Q 005093 708 LWFKK 712 (715)
Q Consensus 708 ~wl~~ 712 (715)
+|++.
T Consensus 426 ~Fi~~ 430 (433)
T PLN03016 426 RWISG 430 (433)
T ss_pred HHHcC
Confidence 78753
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.8 Score=41.82 Aligned_cols=136 Identities=10% Similarity=0.132 Sum_probs=72.1
Q ss_pred eEEEEEccCCc----eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh
Q 005093 163 SLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238 (715)
Q Consensus 163 ~l~~~~~~~g~----~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 238 (715)
.--+||+++|. .++| ...+..+.+.+|+-+|.. +|.+- ..++.+-.+||
T Consensus 174 TCTiWdie~~~~~~vkTQL--IAHDKEV~DIaf~~~s~~-----~FASv-------------gaDGSvRmFDL------- 226 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQL--IAHDKEVYDIAFLKGSRD-----VFASV-------------GADGSVRMFDL------- 226 (364)
T ss_pred eEEEEEEeeccccceeeEE--EecCcceeEEEeccCccc-----eEEEe-------------cCCCcEEEEEe-------
Confidence 34567888762 3566 466667889999997776 44432 12335677776
Q ss_pred hhhhhhccCCCCCCcee-cCCCCc---cccceeEcCCC-CeEEEEecCCCCCCCCccccceeEeeecCCCCCCCccccee
Q 005093 239 SELELKESSSEDLPVVN-LTESIS---SAFFPRFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 313 (715)
Q Consensus 239 ~~~~~~~~~~~~~~~~~-lt~~~~---~~~~~~~spdg-~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~ 313 (715)
...+... +.+.+. ..-..+|++.. +++|-...+ ...+.++|+.....-...
T Consensus 227 ----------R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d----------S~~V~iLDiR~P~tpva~---- 282 (364)
T KOG0290|consen 227 ----------RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD----------SNKVVILDIRVPCTPVAR---- 282 (364)
T ss_pred ----------cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC----------CceEEEEEecCCCcceeh----
Confidence 4333333 322222 12233444322 233322222 234666665442221000
Q ss_pred eeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 005093 314 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 314 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d 363 (715)
+. .+...+..++|.|....-+.+..++....||-++
T Consensus 283 -------------L~-~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 283 -------------LR-NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred -------------hh-cCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 00 1334678899999888777877666655566444
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.6 Score=38.96 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=40.0
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEec-----CC-c---cEEEEecCc--cccccccCCCcccceeecCCCCeE
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-----QS-Q---LEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLI 111 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~-----~~-~---~~~~~~~~~--~~~~~~~~~~~~~~~~wSpDg~~l 111 (715)
..+.+.+|-|.|...|.-++.. .-.+...+. .+ + .-..+.+.. ...+.| ....|||+|+.|
T Consensus 33 qairav~fhp~g~lyavgsnsk--t~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsi------yc~~ws~~geli 104 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSK--TFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSI------YCTAWSPCGELI 104 (350)
T ss_pred hheeeEEecCCCceEEeccCCc--eEEEEccccccCcccccccccCCCeEEeeeccccCccE------EEEEecCccCeE
Confidence 4588999999999877665543 111111111 00 0 001111111 112334 588999999999
Q ss_pred EEEeecCCCCC
Q 005093 112 AYVAEEPSPSK 122 (715)
Q Consensus 112 a~~~~~~~~~~ 122 (715)
|-.+++...+.
T Consensus 105 atgsndk~ik~ 115 (350)
T KOG0641|consen 105 ATGSNDKTIKV 115 (350)
T ss_pred EecCCCceEEE
Confidence 98877665543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.6 Score=41.10 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=25.0
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 005093 335 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
...+.||..|+.| ..+..+....||+=++ .|+.+++..
T Consensus 259 ~w~vSWS~sGn~L-aVs~GdNkvtlwke~~-~Gkw~~v~~ 296 (299)
T KOG1332|consen 259 VWRVSWSLSGNIL-AVSGGDNKVTLWKENV-DGKWEEVGE 296 (299)
T ss_pred eEEEEEeccccEE-EEecCCcEEEEEEeCC-CCcEEEccc
Confidence 3467799999844 4444455667887776 577776653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.69 Score=47.74 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=59.7
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..+.+||..+..+.---......+...+.|||.... |+.+.. .+..|+.+|.
T Consensus 187 G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~----l~vsVG--------------~Dkki~~yD~---------- 238 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEA----LLVSVG--------------YDKKINIYDI---------- 238 (673)
T ss_pred CeEEEEeccCCCcccchhhhccCCcCcceecCCccc----eEEEec--------------ccceEEEeec----------
Confidence 558899987654321100222345667899999987 655542 3347999996
Q ss_pred hhhccCCCCCC-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCC
Q 005093 242 ELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 304 (715)
Q Consensus 242 ~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~ 304 (715)
.+.. ..+|+ -......++|+++|-+|+-...+ ..|+.+|+...+
T Consensus 239 -------~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~-----------G~~i~YD~R~~k 283 (673)
T KOG4378|consen 239 -------RSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSK-----------GELIAYDMRSTK 283 (673)
T ss_pred -------ccccccceee-ecCCcceeeecCCceEEEeecCC-----------ceEEEEecccCC
Confidence 3222 22333 23346779999999988754443 358899987644
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.11 E-value=3.5 Score=39.97 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=57.5
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|-|||.+|-+.... ..-+..+..-+|||=... |. |+-++ .+..+|-+.|+
T Consensus 124 htlKVWDtnTlQ~a~~--F~me~~VYshamSp~a~s-Hc-LiA~g--------------tr~~~VrLCDi---------- 175 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVD--FKMEGKVYSHAMSPMAMS-HC-LIAAG--------------TRDVQVRLCDI---------- 175 (397)
T ss_pred ceEEEeecccceeeEE--eecCceeehhhcChhhhc-ce-EEEEe--------------cCCCcEEEEec----------
Confidence 6799999877654433 223334555678884432 11 22222 24457889998
Q ss_pred hhhccCCCCCCc-eecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 242 ELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 242 ~~~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
++|.. ..|..+...+-.+.|||...+++++...+
T Consensus 176 -------~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 176 -------ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred -------cCCcceeeeccccCceEEEEeccCceeEEEecCCC
Confidence 66665 57788888899999999999998887664
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.4 Score=41.09 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=20.5
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 005093 341 LSDGCTMLLSSIWGSSQVIISVNVSSGELLR 371 (715)
Q Consensus 341 ~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 371 (715)
..++..+++.+ . ..+|+.+|++||+...
T Consensus 209 ~~~~~~l~~~~-~--~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 209 SVDGGTLYVTS-S--DGRLYALDLKTGKVVW 236 (238)
T ss_dssp ECCCTEEEEEE-T--TTEEEEEETTTTEEEE
T ss_pred eeeCCEEEEEe-C--CCEEEEEECCCCCEEe
Confidence 45666677665 2 3689999999998764
|
... |
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.26 Score=46.35 Aligned_cols=234 Identities=12% Similarity=0.091 Sum_probs=130.7
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEec-Cccccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSV 93 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (715)
...|++++++++.. .+.-.+=... ...-..+||++-.-++++...+ ++-++|.......+.+..+. ... |
T Consensus 37 ~G~L~ile~~~~~g--i~e~~s~d~~--D~LfdV~Wse~~e~~~~~a~GD-GSLrl~d~~~~s~Pi~~~kEH~~E----V 107 (311)
T KOG0277|consen 37 NGRLFILEVTDPKG--IQECQSYDTE--DGLFDVAWSENHENQVIAASGD-GSLRLFDLTMPSKPIHKFKEHKRE----V 107 (311)
T ss_pred CceEEEEecCCCCC--eEEEEeeecc--cceeEeeecCCCcceEEEEecC-ceEEEeccCCCCcchhHHHhhhhh----e
Confidence 45677766653332 2221111111 4467789999999988887765 66566654322222222211 111 2
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 173 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 173 (715)
.++.|++-.+++...+. | ...|-+|+..-++
T Consensus 108 ------~Svdwn~~~r~~~ltsS-----------------------------------W--------D~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 108 ------YSVDWNTVRRRIFLTSS-----------------------------------W--------DGTIKLWDPNRPN 138 (311)
T ss_pred ------EEeccccccceeEEeec-----------------------------------c--------CCceEeecCCCCc
Confidence 57889988777766531 1 1456677664333
Q ss_pred -eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 174 -VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 174 -~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
++.. ...+..+.+..|||--.. ++-++..++ ...||-++ ..|.
T Consensus 139 Sv~Tf--~gh~~~Iy~a~~sp~~~n----lfas~Sgd~------------~l~lwdvr------------------~~gk 182 (311)
T KOG0277|consen 139 SVQTF--NGHNSCIYQAAFSPHIPN----LFASASGDG------------TLRLWDVR------------------SPGK 182 (311)
T ss_pred ceEee--cCCccEEEEEecCCCCCC----eEEEccCCc------------eEEEEEec------------------CCCc
Confidence 2222 233446778999997666 544432211 12455555 3355
Q ss_pred ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccccc
Q 005093 253 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 332 (715)
Q Consensus 253 ~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~ 332 (715)
...+..+...+-.-.||.-...+++++..+. -|+.+|+..-.. .+ .... .+.
T Consensus 183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~----------~vr~wDir~~r~-pl----------~eL~-------gh~ 234 (311)
T KOG0277|consen 183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDN----------LVRGWDIRNLRT-PL----------FELN-------GHG 234 (311)
T ss_pred eeEEEeccceeEeecccccCCcEEEecCCCc----------eEEEEehhhccc-cc----------eeec-------CCc
Confidence 5556555556667789988888888876652 366677655221 00 0000 011
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 005093 333 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 370 (715)
Q Consensus 333 ~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 370 (715)
..+..+.|||....++.+.+-+-..+||......+.++
T Consensus 235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE 272 (311)
T ss_pred eEEEEEecCcchhhHhhhccccceEEecccccchhhhh
Confidence 23456779998888888887777778886554333333
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.4 Score=42.42 Aligned_cols=175 Identities=17% Similarity=0.112 Sum_probs=101.2
Q ss_pred CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 161 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
...|-.+|..+|++.... .........+..-|||.. .+.-. . ..|.++|-
T Consensus 82 ~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~----Witd~---------------~-~aI~R~dp--------- 131 (353)
T COG4257 82 TGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSA----WITDT---------------G-LAIGRLDP--------- 131 (353)
T ss_pred cccceecCCCCCceEEEe-cCCCCCCceEEECCCCCe----eEecC---------------c-ceeEEecC---------
Confidence 367889999999988773 233334456677899885 33211 1 26888884
Q ss_pred hhhhccCCCCCCceecCC----CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeee
Q 005093 241 LELKESSSEDLPVVNLTE----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 316 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~----~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~ 316 (715)
++.+.++.+- .......+.|.++|. |.|+... |... ++|-..+. +
T Consensus 132 --------kt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-----G~yG------rLdPa~~~-----------i 180 (353)
T COG4257 132 --------KTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-----GAYG------RLDPARNV-----------I 180 (353)
T ss_pred --------cccceEEeecccccCCCcccceeeCCCcc-EEEeecc-----ccce------ecCcccCc-----------e
Confidence 5666655432 234578899999997 8888775 2211 22221111 1
Q ss_pred eceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeEEEeecCCEEEEE
Q 005093 317 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 317 ~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~~~~~l~~~ 394 (715)
.++..... .+...++-.|||+ +++++..+ +.|-++|+.++..+.+..... .-+...++..=+++.++
T Consensus 181 ~vfpaPqG--------~gpyGi~atpdGs-vwyaslag--naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wit 249 (353)
T COG4257 181 SVFPAPQG--------GGPYGICATPDGS-VWYASLAG--NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWIT 249 (353)
T ss_pred eeeccCCC--------CCCcceEECCCCc-EEEEeccc--cceEEcccccCCcceecCCCcccccccccccCccCcEEEe
Confidence 11111110 1356778899997 77765533 579999999998887765544 11222333222344444
Q ss_pred EeCCCCCCeEEEEeec
Q 005093 395 SSSPVDVPQVKYGYFV 410 (715)
Q Consensus 395 ~~~~~~p~~l~~~~~~ 410 (715)
.. ....+++++..
T Consensus 250 --tw-g~g~l~rfdPs 262 (353)
T COG4257 250 --TW-GTGSLHRFDPS 262 (353)
T ss_pred --cc-CCceeeEeCcc
Confidence 22 33447777754
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.3 Score=41.03 Aligned_cols=143 Identities=13% Similarity=0.073 Sum_probs=80.0
Q ss_pred cceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecC-C---C-
Q 005093 186 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT-E---S- 259 (715)
Q Consensus 186 ~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt-~---~- 259 (715)
+.-+.|-|++.+ ++-.. .++|.+++++ ++.++ ..+. . +
T Consensus 126 i~cvew~Pns~k----lasm~----------------dn~i~l~~l~----------------ess~~vaev~ss~s~e~ 169 (370)
T KOG1007|consen 126 INCVEWEPNSDK----LASMD----------------DNNIVLWSLD----------------ESSKIVAEVLSSESAEM 169 (370)
T ss_pred eeeEEEcCCCCe----eEEec----------------cCceEEEEcc----------------cCcchheeecccccccc
Confidence 456789999999 88765 1357777762 23331 1111 1 1
Q ss_pred CccccceeEcC--CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC-CcccceeeeeeceecCCCCCccccccCCCC
Q 005093 260 ISSAFFPRFSP--DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 336 (715)
Q Consensus 260 ~~~~~~~~~sp--dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~ 336 (715)
.....+-+||| ||.+++-++... |.-+|+.+-... .+. .. +.-.+.
T Consensus 170 ~~~ftsg~WspHHdgnqv~tt~d~t------------l~~~D~RT~~~~~sI~-dA------------------Hgq~vr 218 (370)
T KOG1007|consen 170 RHSFTSGAWSPHHDGNQVATTSDST------------LQFWDLRTMKKNNSIE-DA------------------HGQRVR 218 (370)
T ss_pred cceecccccCCCCccceEEEeCCCc------------EEEEEccchhhhcchh-hh------------------hcceee
Confidence 22467788998 999998776553 677777653221 110 00 111245
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEE
Q 005093 337 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 337 ~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
++.|.|+-..++++..+++..+||-....+-.++.+.....=+....|.+..++|+.+.
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 67788888888888777776777643332233333433322122234556566666544
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.23 Score=52.92 Aligned_cols=61 Identities=16% Similarity=0.276 Sum_probs=46.7
Q ss_pred CcEEEEeeCCCCcCCchHHHHHHHHHHHc---------------C-----Cc-EEEEEeCCCCccCCCCCchHHHHHHHH
Q 005093 649 TPTIFLLGAQDLRVPVSNGLQYARALREK---------------G-----VE-TKVIVFPNDVHGIERPQSDFESFLNIG 707 (715)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~---------------g-----~~-~~~~~~~~~~H~~~~~~~~~~~~~~i~ 707 (715)
.++||..|..|.+|+.-.++++.+.|+=. | .. ..++.+.++||... ...+.++..+-
T Consensus 352 irVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp--~qP~~al~m~~ 429 (437)
T PLN02209 352 YRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE--YLPEESSIMFQ 429 (437)
T ss_pred ceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC--cCHHHHHHHHH
Confidence 68999999999999999999988887611 1 12 66777889999873 35557777777
Q ss_pred HHHH
Q 005093 708 LWFK 711 (715)
Q Consensus 708 ~wl~ 711 (715)
+|+.
T Consensus 430 ~fi~ 433 (437)
T PLN02209 430 RWIS 433 (437)
T ss_pred HHHc
Confidence 7774
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1 Score=49.88 Aligned_cols=95 Identities=19% Similarity=0.230 Sum_probs=61.6
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCC---ccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
....++||.++++|-....+ + ..+| +-| .....+.+-.. +..| ..++||+||.+|+-.
T Consensus 208 ~t~~~~spn~~~~Aa~d~dG----r-I~vw~d~~~~~~~~t~t~lHWH-~~~V------~~L~fS~~G~~LlSG------ 269 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDG----R-ILVWRDFGSSDDSETCTLLHWH-HDEV------NSLSFSSDGAYLLSG------ 269 (792)
T ss_pred ceeEEeccccceEEEeccCC----c-EEEEeccccccccccceEEEec-cccc------ceeEEecCCceEeec------
Confidence 56689999999998654432 3 4456 322 11111111010 1222 799999999988662
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
| ....|.+|.+++++.+-| .--...+.++.||||+..
T Consensus 270 --------------------------------G------~E~VLv~Wq~~T~~kqfL--PRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 270 --------------------------------G------REGVLVLWQLETGKKQFL--PRLGSPILHIVVSPDSDL 306 (792)
T ss_pred --------------------------------c------cceEEEEEeecCCCcccc--cccCCeeEEEEEcCCCCe
Confidence 1 237799999999996666 333456889999999997
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.18 Score=54.78 Aligned_cols=139 Identities=11% Similarity=0.048 Sum_probs=88.5
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|-.||+...+-.... ....-.+.++.|||--.. ..++....+ -|-.+|+
T Consensus 156 g~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~----~F~s~~dsG--------------~lqlWDl---------- 206 (839)
T KOG0269|consen 156 GTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGN----KFASIHDSG--------------YLQLWDL---------- 206 (839)
T ss_pred ceEEEEeeecccccccc-cccchhhhceeeccCCCc----eEEEecCCc--------------eEEEeec----------
Confidence 66888888766554442 122336889999995543 444432221 3444454
Q ss_pred hhhccCCCC-CCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCc-ccceeeeeece
Q 005093 242 ELKESSSED-LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVV 319 (715)
Q Consensus 242 ~~~~~~~~~-~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~l-t~~~~~~~~~~ 319 (715)
++. .-..+++.+.+...-..|+|++.+||-.+ ++ ..+.++++.+.....+ |-.. +
T Consensus 207 ------Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RD----------K~vkiWd~t~~~~~~~~tInT--i---- 263 (839)
T KOG0269|consen 207 ------RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RD----------KMVKIWDMTDSRAKPKHTINT--I---- 263 (839)
T ss_pred ------cCchhHHHHhhcccCceEEEeecCCCceeeecC-CC----------ccEEEEeccCCCccceeEEee--c----
Confidence 233 33467888888888899999999888555 32 3477788776555332 1111 0
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 365 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~ 365 (715)
..+..+.|.|+..+.+.+..-.+...++.+|+.
T Consensus 264 -------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 264 -------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred -------------ceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 135677899998877777776677788888874
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.80 E-value=3.3 Score=38.26 Aligned_cols=140 Identities=13% Similarity=0.146 Sum_probs=80.0
Q ss_pred CceEEEEEccCCc-eEeecCC-----CCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccc
Q 005093 161 QPSLFVININSGE-VQAVKGI-----PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 234 (715)
Q Consensus 161 ~~~l~~~~~~~g~-~~~l~~~-----~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 234 (715)
...|..||+.-.. +..+... -.+..+..++-.|.|+- +.++.. ++.-.++|+
T Consensus 203 dktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl-----l~sg~~--------------dssc~lydi--- 260 (350)
T KOG0641|consen 203 DKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL-----LASGHA--------------DSSCMLYDI--- 260 (350)
T ss_pred CceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce-----eeeccC--------------CCceEEEEe---
Confidence 3668888885433 3333211 11224556778899984 444422 224556665
Q ss_pred cchhhhhhhhccCCCCCC-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCccccee
Q 005093 235 KSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 313 (715)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~ 313 (715)
.++. +++.......++.++|||..-+|+-.+.+. .|.+-|+++.-..+|..-.
T Consensus 261 --------------rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~-----------~ikltdlqgdla~el~~~v- 314 (350)
T KOG0641|consen 261 --------------RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM-----------KIKLTDLQGDLAHELPIMV- 314 (350)
T ss_pred --------------eCCceeeeeCCCccceeEEEeCCCceEEEEecccc-----------eEEEeecccchhhcCceEE-
Confidence 5554 455666666789999999988887666553 4778888886665553211
Q ss_pred eeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 005093 314 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 314 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d 363 (715)
+.+-++. .-...|.|..- -+++++.+....||.++
T Consensus 315 -----v~ehkdk---------~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 315 -----VAEHKDK---------AIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred -----EEeccCc---------eEEEEecCccc-eeeeccCcceEEEeccC
Confidence 1111111 22456887652 34444445556788764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.39 Score=52.32 Aligned_cols=125 Identities=14% Similarity=0.174 Sum_probs=71.8
Q ss_pred ccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCcc-EEEEecCcccc
Q 005093 12 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL-EKEFHVPQTVH 90 (715)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 90 (715)
...+..|..+|+.......+ +..--..++.++|||--....+.... +|.-|+|.|....+- .+++.. .
T Consensus 152 GSQDg~vK~~DlR~~~S~~t------~~~nSESiRDV~fsp~~~~~F~s~~d-sG~lqlWDlRqp~r~~~k~~AH----~ 220 (839)
T KOG0269|consen 152 GSQDGTVKCWDLRSKKSKST------FRSNSESIRDVKFSPGYGNKFASIHD-SGYLQLWDLRQPDRCEKKLTAH----N 220 (839)
T ss_pred cCCCceEEEEeeeccccccc------ccccchhhhceeeccCCCceEEEecC-CceEEEeeccCchhHHHHhhcc----c
Confidence 34666777777766654222 11112458999999976555443333 244444444321111 122221 1
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
| ....+.|+|++.+||-.. +...+.+|+..
T Consensus 221 G------pV~c~nwhPnr~~lATGG--------------------------------------------RDK~vkiWd~t 250 (839)
T KOG0269|consen 221 G------PVLCLNWHPNREWLATGG--------------------------------------------RDKMVKIWDMT 250 (839)
T ss_pred C------ceEEEeecCCCceeeecC--------------------------------------------CCccEEEEecc
Confidence 2 226899999999998742 22568888887
Q ss_pred CCceEeecCCCCCCccceEEEecCCCC
Q 005093 171 SGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 171 ~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
+++...+-....-.++..+.|-|+-+.
T Consensus 251 ~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 251 DSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred CCCccceeEEeecceeeeeeeccCccc
Confidence 766544311223346778999998887
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.27 Score=48.62 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=80.2
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCc-cEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
..+....++|--..|+-....+ . .+++.+ ..+. ..+++. .-.. +.++|+| +-..+.++++
T Consensus 188 Dti~svkfNpvETsILas~~sD-r--sIvLyD~R~~~Pl~KVi~-~mRT----------N~IswnP-eafnF~~a~E--- 249 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASD-R--SIVLYDLRQASPLKKVIL-TMRT----------NTICWNP-EAFNFVAANE--- 249 (433)
T ss_pred CceeEEecCCCcchheeeeccC-C--ceEEEecccCCccceeee-eccc----------cceecCc-cccceeeccc---
Confidence 5678889999887776443322 2 355555 3333 333433 2222 6899999 3333333222
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc-eEeecCCCCCCccceEEEecCCCCCc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
..+||.+|...-+ +..+- ......+.++.|||-|+.
T Consensus 250 ----------------------------------------D~nlY~~DmR~l~~p~~v~-~dhvsAV~dVdfsptG~E-- 286 (433)
T KOG0268|consen 250 ----------------------------------------DHNLYTYDMRNLSRPLNVH-KDHVSAVMDVDFSPTGQE-- 286 (433)
T ss_pred ----------------------------------------cccceehhhhhhcccchhh-cccceeEEEeccCCCcch--
Confidence 2678888764321 11120 111224668899999999
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCC--CccccceeEcCCCCeEEE
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--~~~~~~~~~spdg~~l~~ 277 (715)
++-.+. .+ .|-.+.. ..+..+-+--. =..+..+.||-|.++|+-
T Consensus 287 --fvsgsy-------------Dk--sIRIf~~-----------------~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 287 --FVSGSY-------------DK--SIRIFPV-----------------NHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS 332 (433)
T ss_pred --hccccc-------------cc--eEEEeec-----------------CCCcchhhhhHhhhheeeEEEEeccccEEEe
Confidence 776552 12 3444443 33444333222 235788999999998865
Q ss_pred EecC
Q 005093 278 LSAK 281 (715)
Q Consensus 278 ~~~~ 281 (715)
.|.+
T Consensus 333 GSdd 336 (433)
T KOG0268|consen 333 GSDD 336 (433)
T ss_pred cCCC
Confidence 5544
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.72 E-value=5.1 Score=39.97 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=101.4
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEE-EecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
+.+.+...++-|-.++++--+.+ ....|| .+|+.... +-.-..+ .++++|+--.+++...++
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~LkltltGhi~~v----------r~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLTLTGHIETV----------RGVAVSKRHPYLFSAGED 214 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEeecchhhee----------eeeeecccCceEEEecCC
Confidence 45778888888988887744332 345566 45554322 2122222 688899888877655444
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
... .-|.+.+.+.........+-...+...|-..-.+...+...+.+||..+....-.- .-....+..+.+.|-...
T Consensus 215 k~V--KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-~GH~~~V~~V~~~~~dpq 291 (460)
T KOG0285|consen 215 KQV--KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-SGHTNPVASVMCQPTDPQ 291 (460)
T ss_pred Cee--EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-cCCCCcceeEEeecCCCc
Confidence 322 12333322222222211111111111111111112224578999999887544331 223345777788876665
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEE
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~ 276 (715)
|+..+ -+..|.+.|+ +.+.+...+|.+..........|+-..+|
T Consensus 292 ----vit~S---------------~D~tvrlWDl----------------~agkt~~tlt~hkksvral~lhP~e~~fA 335 (460)
T KOG0285|consen 292 ----VITGS---------------HDSTVRLWDL----------------RAGKTMITLTHHKKSVRALCLHPKENLFA 335 (460)
T ss_pred ----eEEec---------------CCceEEEeee----------------ccCceeEeeecccceeeEEecCCchhhhh
Confidence 66554 2235777777 36778888999999999899998765443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.71 E-value=2 Score=44.37 Aligned_cols=139 Identities=12% Similarity=0.138 Sum_probs=79.2
Q ss_pred ceEEEEEccCCc-eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 162 PSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 162 ~~l~~~~~~~g~-~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
..+-++|.++.. ++.+ -....++....|+|++.. ++.++..+.. ..+|.++
T Consensus 90 G~V~vfD~k~r~iLR~~--~ah~apv~~~~f~~~d~t----~l~s~sDd~v------------~k~~d~s---------- 141 (487)
T KOG0310|consen 90 GHVKVFDMKSRVILRQL--YAHQAPVHVTKFSPQDNT----MLVSGSDDKV------------VKYWDLS---------- 141 (487)
T ss_pred CcEEEeccccHHHHHHH--hhccCceeEEEecccCCe----EEEecCCCce------------EEEEEcC----------
Confidence 668888855422 3444 234445667789999987 6665532211 1333333
Q ss_pred hhhhccCCCCCCc-eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 241 LELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 241 ~~~~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
++.. ..|+.+...++..+|+|-...++++..=+ ..+.++|+........+.+
T Consensus 142 ---------~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD----------g~vrl~DtR~~~~~v~eln-------- 194 (487)
T KOG0310|consen 142 ---------TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD----------GKVRLWDTRSLTSRVVELN-------- 194 (487)
T ss_pred ---------CcEEEEEecCCcceeEeeccccCCCeEEEecCCC----------ceEEEEEeccCCceeEEec--------
Confidence 3333 25667777899999999988888776432 2366677655332211110
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 370 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 370 (715)
+...+..+.+.|.|..| .+ .+.+.+-.||+-+|...
T Consensus 195 -----------hg~pVe~vl~lpsgs~i-as---AgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 195 -----------HGCPVESVLALPSGSLI-AS---AGGNSVKVWDLTTGGQL 230 (487)
T ss_pred -----------CCCceeeEEEcCCCCEE-EE---cCCCeEEEEEecCCcee
Confidence 11235567788888744 33 23345556687655543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.58 E-value=5.1 Score=39.39 Aligned_cols=66 Identities=12% Similarity=0.203 Sum_probs=39.6
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
+.+..-+|++|++.+|...+.. .-.+|.+ .+.+.-...+.- ..|+. .++.+.|+|.+.+|.-.+.+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~--evhiy~~-~~~~~w~~~htl-s~Hd~-----~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNH--EVHIYSM-LGADLWEPAHTL-SEHDK-----IVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred CceeeeeecCCCceEEeccCCc--eEEEEEe-cCCCCceeceeh-hhhCc-----ceeEEeecCCCCceeEccCC
Confidence 4567789999999999876652 2234433 333322222221 12211 23789999999999876543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.5 Score=43.85 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=70.5
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEe-ec
Q 005093 100 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VK 178 (715)
Q Consensus 100 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-l~ 178 (715)
..+.|||..+.+++++..+ ..|.+||...+.... +.
T Consensus 261 EDLqWSptE~~vfaScS~D-------------------------------------------gsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSCD-------------------------------------------GSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred hhhccCCccCceEEeeecC-------------------------------------------ceEEEEEecCCCccceeE
Confidence 7999999999998876543 568889987773222 11
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-CceecC
Q 005093 179 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLT 257 (715)
Q Consensus 179 ~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt 257 (715)
....+..+.-++|+-+-.. |++-. .+ +.+-+.||- + ...+ .+....
T Consensus 298 ~kAh~sDVNVISWnr~~~l----LasG~-Dd--------------Gt~~iwDLR----------~----~~~~~pVA~fk 344 (440)
T KOG0302|consen 298 TKAHNSDVNVISWNRREPL----LASGG-DD--------------GTLSIWDLR----------Q----FKSGQPVATFK 344 (440)
T ss_pred eeccCCceeeEEccCCcce----eeecC-CC--------------ceEEEEEhh----------h----ccCCCcceeEE
Confidence 0222335667788866554 55443 11 234444540 0 1233 333455
Q ss_pred CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCC
Q 005093 258 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 258 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
-+...+.++.|+|....++-++..+ .+|.++|++.
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~D----------~QitiWDlsv 379 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGED----------NQITIWDLSV 379 (440)
T ss_pred eccCCeeEEEeccccCceEEeccCC----------CcEEEEEeec
Confidence 5677899999999776665555443 3566677654
|
|
| >KOG2521 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.4 Score=44.75 Aligned_cols=222 Identities=14% Similarity=0.106 Sum_probs=121.2
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
+...|+|+.+-..+.. ..........+.+.||.++.+-.+-. -..+ ...............+..|.+....
T Consensus 36 ~s~k~Iv~~~gWag~~--~r~l~ky~~~Yq~~g~~~~~~tap~~---~~~~----~~s~~~~sl~~~~~~l~~L~~~~~~ 106 (350)
T KOG2521|consen 36 ESEKPIVVLLGWAGAI--DRNLMKYSKIYQDKGYIVVRITAPCP---SVFL----SASRRILSLSLASTRLSELLSDYNS 106 (350)
T ss_pred CccccEEEEeeecccc--chhHHHHHHHHhcCCceEEEecCccc---cccc----ccccccchhhHHHHHHHHHhhhccC
Confidence 3445877777553332 23445566777899999988776541 1111 1222222344554566666665557
Q ss_pred CCceEEEEEeChhHHHHHHHH---h-hC-CC---ceeEEEecC-Ccchh-----hhhccCCCCCC----ce----eeecc
Q 005093 558 NPSKVTVVGGSHGGFLTTHLI---G-QA-PD---KFVAAAARN-PLCNL-----ALMVGTTDIPD----WC----YVESY 615 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a---~-~~-p~---~~~~~v~~~-~~~~~-----~~~~~~~~~~~----~~----~~~~~ 615 (715)
|+.++..--.|+||...+... . ++ |. ++.+.+..+ |.... ........... |. ....+
T Consensus 107 ~~~pi~fh~FS~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~ 186 (350)
T KOG2521|consen 107 DPCPIIFHVFSGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPARSSPVQLGWAVSFSSPPDDYVARWARLNYHITLL 186 (350)
T ss_pred CcCceEEEEecCCceeehHHHHHHHhhcCchhHhhcCCceEeccccccchhhhcceeccccCchhhHHHHHhcCeEEEEE
Confidence 889999999999998665443 1 12 21 233333222 22110 00000000000 00 00000
Q ss_pred ---C----CCCCCCCCCC-CC---hhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEE
Q 005093 616 ---G----SKGKDSFTES-PS---VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 684 (715)
Q Consensus 616 ---~----~~~~~~~~~~-~~---~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (715)
+ .......+.. .. ......+. ........+.+.+.+..|.++|.++.+++.+..+..|..++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~-----~~~~~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~ 261 (350)
T KOG2521|consen 187 TMAGNEGGAYLLGPLAEKISMSRKYHFLDRYE-----EQRNELPWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSV 261 (350)
T ss_pred EeeecccchhhhhhhhhccccccchHHHHHHH-----hhhhcccccceeecCCccccccHHHHHHHHHHHHhcCceEEEe
Confidence 0 0000000000 00 00000000 0011123577888899999999999999999999999999999
Q ss_pred EeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 685 VFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 685 ~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
-+.+..|............+...+|++..
T Consensus 262 ~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~ 290 (350)
T KOG2521|consen 262 KFKDSEHVAHFRSFPKTYLKKCSEFLRSV 290 (350)
T ss_pred eccCccceeeeccCcHHHHHHHHHHHHhc
Confidence 99999998766666778899999999864
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.39 E-value=5.8 Score=44.29 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=47.3
Q ss_pred CCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCccccee
Q 005093 26 ENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGIS 103 (715)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (715)
...+.+.|-|.- ..+...+||+||.+|+-. +...++.+| .+++.+-|-.+...+ ..+.
T Consensus 240 ~~~t~t~lHWH~-----~~V~~L~fS~~G~~LlSG-----G~E~VLv~Wq~~T~~kqfLPRLgs~I----------~~i~ 299 (792)
T KOG1963|consen 240 DSETCTLLHWHH-----DEVNSLSFSSDGAYLLSG-----GREGVLVLWQLETGKKQFLPRLGSPI----------LHIV 299 (792)
T ss_pred ccccceEEEecc-----cccceeEEecCCceEeec-----ccceEEEEEeecCCCcccccccCCee----------EEEE
Confidence 334445555554 567889999999988632 555788899 344433233333333 7999
Q ss_pred ecCCCCeEEEEeec
Q 005093 104 WNSDETLIAYVAEE 117 (715)
Q Consensus 104 wSpDg~~la~~~~~ 117 (715)
||||+...+.+.++
T Consensus 300 vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 300 VSPDSDLYSLVLED 313 (792)
T ss_pred EcCCCCeEEEEecC
Confidence 99999988776553
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.15 Score=54.90 Aligned_cols=129 Identities=15% Similarity=0.100 Sum_probs=80.4
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCCCCc----hhhh--hcCC
Q 005093 463 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFG----EEAL--QSLP 533 (715)
Q Consensus 463 ~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~~~g----~~~~--~~~~ 533 (715)
..|.-.+++|.+.. .. ++.+=||++.. ...+.. .+..-..+||+++.-|-- ..+.. .++. ....
T Consensus 15 ~~i~fev~LP~~WN----gR-~~~~GgGG~~G-~i~~~~~~~~~~~~~~~G~A~~~TD~G-h~~~~~~~~~~~~~n~~~~ 87 (474)
T PF07519_consen 15 PNIRFEVWLPDNWN----GR-FLQVGGGGFAG-GINYADGKASMATALARGYATASTDSG-HQGSAGSDDASFGNNPEAL 87 (474)
T ss_pred ceEEEEEECChhhc----cC-eEEECCCeeeC-cccccccccccchhhhcCeEEEEecCC-CCCCcccccccccCCHHHH
Confidence 35666788897432 12 44444444432 222221 134446899999999932 11110 1111 0011
Q ss_pred CCCCccchhhHHHHHHHHHHcC-CCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh
Q 005093 534 GKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598 (715)
Q Consensus 534 ~~~~~~~~~d~~~~i~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~ 598 (715)
.+++...+.+...+-+.|++.. ...+++-+..|.|-||-.++.+|.++|+.|.++++.+|..++.
T Consensus 88 ~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~ 153 (474)
T PF07519_consen 88 LDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWT 153 (474)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHH
Confidence 2333444556666666676653 3567889999999999999999999999999999999988763
|
It also includes several bacterial homologues of unknown function. |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.2 Score=41.89 Aligned_cols=63 Identities=10% Similarity=0.152 Sum_probs=42.2
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEE---EEecCccccccccCCCcccceeecCCCCeEEEEee
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEK---EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 116 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~ 116 (715)
...+...-|+|.+.+|.-.+.+ .+..+|....+++-.+ +..+.... ..+.|||.+.++|..+.
T Consensus 55 d~~vtgvdWap~snrIvtcs~d--rnayVw~~~~~~~WkptlvLlRiNrAA----------t~V~WsP~enkFAVgSg 120 (361)
T KOG1523|consen 55 DKIVTGVDWAPKSNRIVTCSHD--RNAYVWTQPSGGTWKPTLVLLRINRAA----------TCVKWSPKENKFAVGSG 120 (361)
T ss_pred CcceeEEeecCCCCceeEccCC--CCccccccCCCCeeccceeEEEeccce----------eeEeecCcCceEEeccC
Confidence 3567889999999999866544 3445666544554333 23333333 68999999999998644
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.11 Score=45.95 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-------CCceeEEEecCCcc
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-------PDKFVAAAARNPLC 595 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-------p~~~~~~v~~~~~~ 595 (715)
.+.+.+.++.+.++.. ..+|.+.|||+||.+|..++... +..+.+....+|.+
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 4456666666666642 47899999999999999887642 13456666555543
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=4.1 Score=43.24 Aligned_cols=116 Identities=11% Similarity=0.051 Sum_probs=58.0
Q ss_pred cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccc
Q 005093 262 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341 (715)
Q Consensus 262 ~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 341 (715)
.+....|+-||=.++..... .++|++||.+.+...+- .. .|...+..+.|.
T Consensus 230 svTal~F~d~gL~~aVGts~-----------G~v~iyDLRa~~pl~~k------------dh------~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTST-----------GSVLIYDLRASKPLLVK------------DH------GYELPIKKLDWQ 280 (703)
T ss_pred cceEEEecCCceeEEeeccC-----------CcEEEEEcccCCceeec------------cc------CCccceeeeccc
Confidence 47788898888877765544 25899999886653221 11 122335566775
Q ss_pred cCCCE-EEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 342 SDGCT-MLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 342 ~dg~~-l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
+.+.. .+++ .+.. .|-.||..+|+.-.......++...-+-++++-+++.-.++..+ ..|.=+++
T Consensus 281 ~~~~q~~v~S-~Dk~--~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~-~yyiP~LG 346 (703)
T KOG2321|consen 281 DTDQQNKVVS-MDKR--ILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMH-TYYIPSLG 346 (703)
T ss_pred ccCCCceEEe-cchH--HhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcce-eEEccccC
Confidence 54221 2232 2222 23334666777655444433333223334444444433333332 24443443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.78 Score=47.02 Aligned_cols=217 Identities=15% Similarity=0.107 Sum_probs=108.1
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
|.+.+.+-||+|.+|+--. .+.++| +| .+|..-.+.. .... .++.+.||-||..|+-.+.+...
T Consensus 82 g~v~al~s~n~G~~l~ag~----i~g~lY-lWelssG~LL~v~~---aHYQ------~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGT----ISGNLY-LWELSSGILLNVLS---AHYQ------SITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred cceeeeecCCCceEEEeec----ccCcEE-EEEeccccHHHHHH---hhcc------ceeEEEEeCCCcEEEecCCCccE
Confidence 6678888999998886321 122444 35 4555433321 1111 12678888888877655444333
Q ss_pred CCCCcc-CCC------CCCCCCCcCCCCCCCCCcccCC--cCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEE
Q 005093 121 SKPTFS-LGS------TKGGSSDKDCNSWKGQGDWEED--WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW 191 (715)
Q Consensus 121 ~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~ 191 (715)
...... +.. ...-..+.+....+.++..... -+..+.......+.+||+.+|.+..- ...+..+..+..
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt--i~fp~si~av~l 225 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT--ITFPSSIKAVAL 225 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE--EecCCcceeEEE
Confidence 221111 000 0000111122222211111100 01122222347899999999976433 344456778888
Q ss_pred ecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCc--cccceeEc
Q 005093 192 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFS 269 (715)
Q Consensus 192 spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~--~~~~~~~s 269 (715)
.|-++ .+|.+.+++ .||..++-.-+....+++...-....-+...+..+.+ .+.-.+.|
T Consensus 226 Dpae~-----~~yiGt~~G--------------~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais 286 (476)
T KOG0646|consen 226 DPAER-----VVYIGTEEG--------------KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS 286 (476)
T ss_pred ccccc-----EEEecCCcc--------------eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence 99776 577774433 4666554211100111100000112223344555555 67889999
Q ss_pred CCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 270 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 270 pdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
-||..|+-.+.+ ..+.++|..+.+-
T Consensus 287 ~DgtlLlSGd~d-----------g~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 287 TDGTLLLSGDED-----------GKVCVWDIYSKQC 311 (476)
T ss_pred cCccEEEeeCCC-----------CCEEEEecchHHH
Confidence 999977644433 2478888877554
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=94.02 E-value=6.5 Score=43.20 Aligned_cols=111 Identities=16% Similarity=0.056 Sum_probs=63.6
Q ss_pred cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccc
Q 005093 262 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341 (715)
Q Consensus 262 ~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 341 (715)
......++|||++++.++.+.. ....|..++...... ++ .+.. ..-..+.
T Consensus 236 npd~v~~spdGk~afvTsyNsE-------~G~tl~em~a~e~d~---------~v-vfni-------------~~iea~v 285 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSE-------EGVTLAEMMAAERDW---------VV-VFNI-------------ARIEEAV 285 (635)
T ss_pred CcccceECCCCCEEEEeccCcc-------cCcceeeeccccCce---------EE-EEch-------------HHHHHhh
Confidence 5567899999999887775432 123455565432110 00 0000 0011356
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCC----C-cEEE-ecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 342 SDGCTMLLSSIWGSSQVIISVNVSS----G-ELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 342 ~dg~~l~~~~~~~~~~~l~~~d~~t----g-~~~~-l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
+||++.++. ..++-.+|..+ + +... |.-+... ....+||||.++++.. ...+.+-++|+.+
T Consensus 286 kdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKsP-HGV~vSPDGkylyVan---klS~tVSVIDv~k 352 (635)
T PRK02888 286 KAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKNP-HGVNTSPDGKYFIANG---KLSPTVTVIDVRK 352 (635)
T ss_pred hCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECCCCc-cceEECCCCCEEEEeC---CCCCcEEEEEChh
Confidence 789877652 35778889887 2 3433 4444433 3467899999887655 3334477778654
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.13 Score=46.19 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC
Q 005093 543 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 583 (715)
Q Consensus 543 d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 583 (715)
.+...++..... ....+|.++|||+||.+|..++.....
T Consensus 13 ~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~ 51 (153)
T cd00741 13 LVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRG 51 (153)
T ss_pred HHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHh
Confidence 344444444333 246799999999999999998876543
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.3 Score=52.45 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=71.8
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC-CCceecCCCCccc
Q 005093 185 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSA 263 (715)
Q Consensus 185 ~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~~ 263 (715)
.+..+..||+|+- |+.+...... ....|++++. .. .+...|..+.-.+
T Consensus 527 Ev~~l~~s~~gnl----iASaCKS~~~----------ehAvI~lw~t-----------------~~W~~~~~L~~HsLTV 575 (764)
T KOG1063|consen 527 EVYALAISPTGNL----IASACKSSLK----------EHAVIRLWNT-----------------ANWLQVQELEGHSLTV 575 (764)
T ss_pred eEEEEEecCCCCE----EeehhhhCCc----------cceEEEEEec-----------------cchhhhheecccceEE
Confidence 4567888999986 6654422211 2235777764 22 2334567777789
Q ss_pred cceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC--CCcccceeeeeeceecCCCCCccccccCCCCCCccc
Q 005093 264 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN--FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341 (715)
Q Consensus 264 ~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~--~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 341 (715)
....|||||++|+-++.++. ..||.. +.+.. .+... -..+..-+-...|+
T Consensus 576 T~l~FSpdg~~LLsvsRDRt---------~sl~~~--~~~~~~e~~fa~-----------------~k~HtRIIWdcsW~ 627 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRT---------VSLYEV--QEDIKDEFRFAC-----------------LKAHTRIIWDCSWS 627 (764)
T ss_pred EEEEECCCCcEEEEeecCce---------EEeeee--ecccchhhhhcc-----------------ccccceEEEEcccC
Confidence 99999999999998887753 345543 22111 11000 00111223466899
Q ss_pred cCCCEEEEEeeeCCeeEEEEEEC
Q 005093 342 SDGCTMLLSSIWGSSQVIISVNV 364 (715)
Q Consensus 342 ~dg~~l~~~~~~~~~~~l~~~d~ 364 (715)
||+++ +++.+++....+|...-
T Consensus 628 pde~~-FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 628 PDEKY-FATASRDKKVKVWEEPD 649 (764)
T ss_pred cccce-eEEecCCceEEEEeccC
Confidence 99986 67777777777887753
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=93.93 E-value=3 Score=44.57 Aligned_cols=140 Identities=13% Similarity=0.150 Sum_probs=78.0
Q ss_pred cccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCC----CCCCeEEEEe--cCCccEEE--
Q 005093 11 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE----NESPIQFELW--SQSQLEKE-- 82 (715)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~----~~~~~~~~~~--~~~~~~~~-- 82 (715)
.+..+++|-++.+++.+. ..|.+.. +. .......||-...+..++.+.. ++..--+.++ ..++.+++
T Consensus 179 ~e~draNl~L~~~~~~kl--EvL~yir-TE--~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsv 253 (545)
T PF11768_consen 179 SEKDRANLHLLSCSGGKL--EVLSYIR-TE--NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSV 253 (545)
T ss_pred ccchhccEEEEEecCCcE--EEEEEEE-ec--CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEE
Confidence 444566777765655532 2332221 11 3345667776555555554321 1222222223 23333332
Q ss_pred Eec--CccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCcc
Q 005093 83 FHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR 160 (715)
Q Consensus 83 ~~~--~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 160 (715)
+.. +..+ ...++||++++++..+.+
T Consensus 254 tsipL~s~v----------~~ca~sp~E~kLvlGC~D------------------------------------------- 280 (545)
T PF11768_consen 254 TSIPLPSQV----------ICCARSPSEDKLVLGCED------------------------------------------- 280 (545)
T ss_pred EEEecCCcc----------eEEecCcccceEEEEecC-------------------------------------------
Confidence 222 2222 688999999999997664
Q ss_pred CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEec
Q 005093 161 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 231 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 231 (715)
..|.++|...+..+.. ........++|+|||. ++.+++ .+++|..+|.
T Consensus 281 -gSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~ga-----i~~V~s--------------~qGelQ~FD~ 328 (545)
T PF11768_consen 281 -GSIILYDTTRGVTLLA---KAEFIPTLIAWHPDGA-----IFVVGS--------------EQGELQCFDM 328 (545)
T ss_pred -CeEEEEEcCCCeeeee---eecccceEEEEcCCCc-----EEEEEc--------------CCceEEEEEe
Confidence 5588899866644333 3446677899999998 444442 3346777776
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.081 Score=49.29 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCCCCCchh-hhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC
Q 005093 510 GYSLLIVNYRGSLGFGEE-ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA 581 (715)
Q Consensus 510 G~~vi~~d~rG~~~~g~~-~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 581 (715)
-..|++|-||-..-.... ...............|+.+|.++.+++. -+..+++|+|||.|+.+...++...
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~-n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANY-NNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhc-CCCCCEEEEEeChHHHHHHHHHHHH
Confidence 357889999864322111 0000111122334789999999888774 2457899999999999999998653
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.91 Score=48.10 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=53.1
Q ss_pred ceEEEEEccCCceE-eecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 162 PSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 162 ~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
..|.++|+...++. .+ .++...+..++.+|.|.. |+..+. ...+..+|++
T Consensus 587 ~~vRiYdL~kqelvKkL--~tg~kwiS~msihp~GDn----li~gs~---------------d~k~~WfDld-------- 637 (733)
T KOG0650|consen 587 RSVRIYDLSKQELVKKL--LTGSKWISSMSIHPNGDN----LILGSY---------------DKKMCWFDLD-------- 637 (733)
T ss_pred cceEEEehhHHHHHHHH--hcCCeeeeeeeecCCCCe----EEEecC---------------CCeeEEEEcc--------
Confidence 66889999776543 34 455567888999999998 877652 2356677763
Q ss_pred hhhhccCCCCCCceecCCCCccccceeE----------cCCCCeEEEEecCC
Q 005093 241 LELKESSSEDLPVVNLTESISSAFFPRF----------SPDGKFLVFLSAKS 282 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~~~~~~~~~~~----------spdg~~l~~~~~~~ 282 (715)
..+...++|-.+....++++| |+||..++|..+-.
T Consensus 638 -------lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY 682 (733)
T KOG0650|consen 638 -------LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVY 682 (733)
T ss_pred -------cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeee
Confidence 144455555444333333333 67777777766553
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=4.4 Score=44.60 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=38.4
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEE
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 114 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~ 114 (715)
.+..++.|+||+.+|++.. +...++..+.++..+.+..- ... ..++|.++| ++.-+
T Consensus 344 ~~~s~avS~~g~~~A~~~~---~~~~l~~~~~g~~~~~~~~g-~~L----------t~PS~d~~g-~vWtv 399 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNG---SRTTLYTVSPGQPARALTSG-STL----------TRPSFSPQD-WVWTA 399 (573)
T ss_pred cccceeecCCCceEEEecC---CCcEEEEecCCCcceeeecC-CCc----------cCCcccCCC-CEEEe
Confidence 4678899999999999843 23466666666555554442 223 789999999 66544
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.46 E-value=2.8 Score=41.04 Aligned_cols=135 Identities=18% Similarity=0.237 Sum_probs=80.5
Q ss_pred ccccccccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCc--eEEEEecCCCCCCeEEEEecCCccEE
Q 005093 4 ISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVVRNPENESPIQFELWSQSQLEK 81 (715)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~--~la~~~~~~~~~~~~~~~~~~~~~~~ 81 (715)
|+.|-+-....+-.|.++|+..... + ..+..+.+.+.+..|+|+-+ +|.-.++++ ...+|+.|.-.-
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~q----l--g~ll~HagsitaL~F~~~~S~shLlS~sdDG-----~i~iw~~~~W~~ 119 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQ----L--GILLSHAGSITALKFYPPLSKSHLLSGSDDG-----HIIIWRVGSWEL 119 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhh----h--cceeccccceEEEEecCCcchhheeeecCCC-----cEEEEEcCCeEE
Confidence 4444444555666777777765543 1 22334458899999999886 666554443 456775555433
Q ss_pred EEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccC
Q 005093 82 EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQ 161 (715)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 161 (715)
+-.+ ....+.| +.++..|.|+ ||..... .
T Consensus 120 ~~sl-K~H~~~V------t~lsiHPS~K-LALsVg~-------------------------------------------D 148 (362)
T KOG0294|consen 120 LKSL-KAHKGQV------TDLSIHPSGK-LALSVGG-------------------------------------------D 148 (362)
T ss_pred eeee-ccccccc------ceeEecCCCc-eEEEEcC-------------------------------------------C
Confidence 2222 1111223 8999999886 6664321 2
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEe
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 206 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~ 206 (715)
..|.+|||-.|+.-.+ ..-......+.|+|.|.+ ++...
T Consensus 149 ~~lr~WNLV~Gr~a~v--~~L~~~at~v~w~~~Gd~----F~v~~ 187 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFV--LNLKNKATLVSWSPQGDH----FVVSG 187 (362)
T ss_pred ceeeeehhhcCcccee--eccCCcceeeEEcCCCCE----EEEEe
Confidence 5688888877765443 122223345899999998 66654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=12 Score=39.60 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=33.5
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 343 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 343 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
++..||+... ...|+.+|..+|+...-...........-...++.|++...+ ..|+.++..+++
T Consensus 293 ~~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~----G~l~~ld~~tG~ 356 (394)
T PRK11138 293 DGGRIYLVDQ---NDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSE----GYLHWINREDGR 356 (394)
T ss_pred ECCEEEEEcC---CCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCC----CEEEEEECCCCC
Confidence 4456776553 347999999999765432211100111111235566554322 357777766553
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.39 E-value=2.5 Score=49.00 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=50.9
Q ss_pred CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCcc
Q 005093 183 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISS 262 (715)
Q Consensus 183 ~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~ 262 (715)
+..+.++.|-.|+.. |++.. ..++|..+|. ++...+.+..-+..
T Consensus 68 d~~i~s~~fl~d~~~----i~v~~---------------~~G~iilvd~-----------------et~~~eivg~vd~G 111 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS----ICVIT---------------ALGDIILVDP-----------------ETLELEIVGNVDNG 111 (1265)
T ss_pred CcceEEEEEecccce----EEEEe---------------cCCcEEEEcc-----------------cccceeeeeeccCc
Confidence 345667888888888 87765 3347888886 78888887777778
Q ss_pred ccceeEcCCCCeEEEEecCC
Q 005093 263 AFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~~~~ 282 (715)
+...+||||++.+++++...
T Consensus 112 I~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 112 ISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred eEEEeecCCCcEEEEEeCCc
Confidence 99999999999999998764
|
|
| >smart00824 PKS_TE Thioesterase | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.52 Score=44.67 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=50.0
Q ss_pred ccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHH-HHHHHHcCCCCCceEEEEEeChhHHHHH
Q 005093 497 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTT 575 (715)
Q Consensus 497 ~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~-i~~l~~~~~~d~~~i~l~G~S~GG~~a~ 575 (715)
..|......+. ..+.|+.++++|. +... ......+++.+. ++.+.+. ....++.++|||+||.++.
T Consensus 13 ~~~~~~~~~l~-~~~~v~~~~~~g~---~~~~-------~~~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a~ 79 (212)
T smart00824 13 HEYARLAAALR-GRRDVSALPLPGF---GPGE-------PLPASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLAH 79 (212)
T ss_pred HHHHHHHHhcC-CCccEEEecCCCC---CCCC-------CCCCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHHH
Confidence 34666666664 4689999999884 2211 111123343332 2333332 2346799999999999998
Q ss_pred HHHhh---CCCceeEEEecCC
Q 005093 576 HLIGQ---APDKFVAAAARNP 593 (715)
Q Consensus 576 ~~a~~---~p~~~~~~v~~~~ 593 (715)
.++.+ .+..+.++++..+
T Consensus 80 ~~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 80 AVAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHHHHhCCCCCcEEEEEcc
Confidence 87765 3445666665544
|
Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.2 Score=47.76 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=47.5
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCcccc
Q 005093 185 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 264 (715)
Q Consensus 185 ~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 264 (715)
.+.+++|.|||.. ++..+. +.++++|.. +++....|-.+...+.
T Consensus 14 ci~d~afkPDGsq----L~lAAg----------------~rlliyD~n----------------dG~llqtLKgHKDtVy 57 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQ----LILAAG----------------SRLLVYDTS----------------DGTLLQPLKGHKDTVY 57 (1081)
T ss_pred chheeEECCCCce----EEEecC----------------CEEEEEeCC----------------CcccccccccccceEE
Confidence 5778899999999 887762 379999972 6677778888888899
Q ss_pred ceeEcCCCCeEEEEe
Q 005093 265 FPRFSPDGKFLVFLS 279 (715)
Q Consensus 265 ~~~~spdg~~l~~~~ 279 (715)
-++||.||+.++-.+
T Consensus 58 cVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 58 CVAYAKDGKRFASGS 72 (1081)
T ss_pred EEEEccCCceeccCC
Confidence 999999999876433
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.36 Score=54.94 Aligned_cols=142 Identities=11% Similarity=0.171 Sum_probs=84.0
Q ss_pred ceEEEEEccCCce-EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 162 PSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 162 ~~l~~~~~~~g~~-~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
....+||+...+. ..+..+........++|.||+.. -+.++..++ +..-|-..|+-
T Consensus 184 g~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT----ql~~As~dd-----------~~PviqlWDlR-------- 240 (1049)
T KOG0307|consen 184 GRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT----QLLVASGDD-----------SAPVIQLWDLR-------- 240 (1049)
T ss_pred CCceeccccCCCcccccccCCCccceeeeeeCCCCce----eeeeecCCC-----------CCceeEeeccc--------
Confidence 4578889876632 22311223344668999999988 444443222 22234444430
Q ss_pred hhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC-Ccccceeeeeece
Q 005093 241 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVV 319 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~ 319 (715)
-.+...+.++.+...+-...|++.+..++..+.++ .+++.++..+++.. .+..
T Consensus 241 -------~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD----------~~ii~wN~~tgEvl~~~p~--------- 294 (1049)
T KOG0307|consen 241 -------FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD----------NRIICWNPNTGEVLGELPA--------- 294 (1049)
T ss_pred -------ccCCchhhhcccccceeeeccCCCCchhhhcccCC----------CCeeEecCCCceEeeecCC---------
Confidence 04556667777888899999999998888888775 35778887775541 1110
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d 363 (715)
.|.| ...+.|.|..-.++..+.-.|...||.+-
T Consensus 295 --------~~nW---~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 295 --------QGNW---CFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred --------CCcc---eeeeeecCCCcchhhhheeccceeeeeee
Confidence 0112 23455766555455555566667777664
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.18 E-value=18 Score=40.87 Aligned_cols=98 Identities=10% Similarity=0.121 Sum_probs=55.6
Q ss_pred ccccccccccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCcc
Q 005093 2 FSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQL 79 (715)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~ 79 (715)
|-.+||=|.-..-+..|.+++..... .+. .+..++..++...|.+.=-||.-.+++ |...+| ..++-
T Consensus 59 FH~~qplFVSGGDDykIkVWnYk~rr-----clf-tL~GHlDYVRt~~FHheyPWIlSASDD-----QTIrIWNwqsr~~ 127 (1202)
T KOG0292|consen 59 FHPTQPLFVSGGDDYKIKVWNYKTRR-----CLF-TLLGHLDYVRTVFFHHEYPWILSASDD-----QTIRIWNWQSRKC 127 (1202)
T ss_pred ecCCCCeEEecCCccEEEEEecccce-----ehh-hhccccceeEEeeccCCCceEEEccCC-----CeEEEEeccCCce
Confidence 44455555544444444444343332 222 355677888999999988888765443 566677 33333
Q ss_pred EEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 80 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
..+.. +..| .+...+|.|....|+-.+-+.+
T Consensus 128 iavlt--GHnH-------YVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 128 IAVLT--GHNH-------YVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred EEEEe--cCce-------EEEeeccCCccceEEEecccce
Confidence 33221 1111 2278999998887776654443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=93.10 E-value=13 Score=39.07 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=35.5
Q ss_pred CCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 344 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 344 g~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
+..+|+... . ..|+.+|+++|+...-..... ......+++.+++.. .-..++.++..+++
T Consensus 241 ~~~vy~~~~-~--g~l~a~d~~tG~~~W~~~~~~---~~~p~~~~~~vyv~~----~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 241 GGQVYAVSY-Q--GRVAALDLRSGRVLWKRDASS---YQGPAVDDNRLYVTD----ADGVVVALDRRSGS 300 (377)
T ss_pred CCEEEEEEc-C--CEEEEEECCCCcEEEeeccCC---ccCceEeCCEEEEEC----CCCeEEEEECCCCc
Confidence 345666543 2 379999999998765443221 123344567777654 22468888876553
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.89 E-value=2 Score=41.77 Aligned_cols=119 Identities=12% Similarity=0.190 Sum_probs=71.3
Q ss_pred CCCCCccceEEEecCCCCCccEEEE-EeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc--eec
Q 005093 180 IPKSLSVGQVVWAPLNEGLHQYLVF-VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNL 256 (715)
Q Consensus 180 ~~~~~~~~~~~~spdg~~~~~~i~~-~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l 256 (715)
.+.+..+..++|||.... ++- .+|.. ..++|-+. ++|.. +..
T Consensus 24 ~pP~DsIS~l~FSP~~~~----~~~A~SWD~-------------tVR~wevq------------------~~g~~~~ka~ 68 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADN----LLAAGSWDG-------------TVRIWEVQ------------------NSGQLVPKAQ 68 (347)
T ss_pred CCcccchheeEeccccCc----eEEecccCC-------------ceEEEEEe------------------cCCcccchhh
Confidence 345557889999995554 443 33321 12566655 32322 344
Q ss_pred CCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCC
Q 005093 257 TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 336 (715)
Q Consensus 257 t~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~ 336 (715)
.+..+.+-...||.||.+++-.+.+ .++-++||.+++..++.. +...+.
T Consensus 69 ~~~~~PvL~v~WsddgskVf~g~~D-----------k~~k~wDL~S~Q~~~v~~--------------------Hd~pvk 117 (347)
T KOG0647|consen 69 QSHDGPVLDVCWSDDGSKVFSGGCD-----------KQAKLWDLASGQVSQVAA--------------------HDAPVK 117 (347)
T ss_pred hccCCCeEEEEEccCCceEEeeccC-----------CceEEEEccCCCeeeeee--------------------ccccee
Confidence 4566778889999999766444333 357888999988755532 223455
Q ss_pred CCccccCCC-EEEEEeeeCCeeEEEEEECCC
Q 005093 337 SNPWLSDGC-TMLLSSIWGSSQVIISVNVSS 366 (715)
Q Consensus 337 ~~~~~~dg~-~l~~~~~~~~~~~l~~~d~~t 366 (715)
.+.|-+... .++++.+++. .|-.+|++.
T Consensus 118 t~~wv~~~~~~cl~TGSWDK--TlKfWD~R~ 146 (347)
T KOG0647|consen 118 TCHWVPGMNYQCLVTGSWDK--TLKFWDTRS 146 (347)
T ss_pred EEEEecCCCcceeEeccccc--ceeecccCC
Confidence 666755443 4666666654 455567653
|
|
| >PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.3 Score=47.82 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=45.8
Q ss_pred CCCcEEEEEcCCCCCCC-CccchHHHHHH--HhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHH-HHHHHc
Q 005093 479 SCDPLIVVLHGGPHSVS-LSSYSKSLAFL--SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDM 554 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~-~~~~~~~~~~l--a~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i-~~l~~~ 554 (715)
.+.| ||+.||-+.... ..........+ .--|..|.+++.-. + ...+..+. +. ..+.+..+.+ +.+.+.
T Consensus 4 ~~~P-vViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig~-~-~~~D~~~s----~f-~~v~~Qv~~vc~~l~~~ 75 (279)
T PF02089_consen 4 SPLP-VVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIGN-D-PSEDVENS----FF-GNVNDQVEQVCEQLAND 75 (279)
T ss_dssp SS---EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SSS-S-HHHHHHHH----HH-SHHHHHHHHHHHHHHH-
T ss_pred CCCc-EEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEECC-C-cchhhhhh----HH-HHHHHHHHHHHHHHhhC
Confidence 4455 677999543321 11233222222 23577788877532 1 00010000 00 1133333333 333333
Q ss_pred CCCCCceEEEEEeChhHHHHHHHHhhCCC-ceeEEEecCCc
Q 005093 555 GLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPL 594 (715)
Q Consensus 555 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~ 594 (715)
+... +-+.++|+|.||.+.-.++.+.++ .++-.|.+++.
T Consensus 76 p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggp 115 (279)
T PF02089_consen 76 PELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGP 115 (279)
T ss_dssp GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES--
T ss_pred hhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecCc
Confidence 3222 469999999999999999888764 57777776653
|
Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A. |
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.84 E-value=2.6 Score=39.95 Aligned_cols=173 Identities=13% Similarity=0.168 Sum_probs=98.1
Q ss_pred cCceEEEEEcc-CCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh
Q 005093 160 RQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238 (715)
Q Consensus 160 ~~~~l~~~~~~-~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 238 (715)
+...|++.+++ .+..+.+-...-.....+++||+.-.. +++++..+ +.|-++|+.
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~----~~~~a~GD--------------GSLrl~d~~------ 91 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHEN----QVIAASGD--------------GSLRLFDLT------ 91 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcc----eEEEEecC--------------ceEEEeccC------
Confidence 45789999996 333333311123345778999998888 88877433 345555542
Q ss_pred hhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeec
Q 005093 239 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 318 (715)
Q Consensus 239 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~ 318 (715)
...+.+..+.++...+.+..|++-.++.+.++.=+ +.-.||..+.+. ..+.....
T Consensus 92 ---------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD--------~TiKLW~~~r~~-Sv~Tf~gh------- 146 (311)
T KOG0277|consen 92 ---------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD--------GTIKLWDPNRPN-SVQTFNGH------- 146 (311)
T ss_pred ---------CCCcchhHHHhhhhheEEeccccccceeEEeeccC--------CceEeecCCCCc-ceEeecCC-------
Confidence 24556666677777888899998877776666221 122344333222 11111111
Q ss_pred eecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEE
Q 005093 319 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
..-+....|+|.---++.+.+.++.-+||-++.. |+...|......+--..|+.-...++++.
T Consensus 147 -------------~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 147 -------------NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred -------------ccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeEEEeccceeEeecccccCCcEEEec
Confidence 1123456688765557777777777788877765 55444544443222234455445555544
|
|
| >PLN02606 palmitoyl-protein thioesterase | Back alignment and domain information |
|---|
Probab=92.55 E-value=1.2 Score=44.13 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=57.3
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
+.| ||++||-+............+.+.+ .|+-+.++. .|. +. ...+.....+.+..+-+.|.+.+..
T Consensus 26 ~~P-vViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~---~~------~~s~~~~~~~Qv~~vce~l~~~~~L- 93 (306)
T PLN02606 26 SVP-FVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGN---GV------QDSLFMPLRQQASIACEKIKQMKEL- 93 (306)
T ss_pred CCC-EEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECC---Cc------ccccccCHHHHHHHHHHHHhcchhh-
Confidence 456 6778996533334455566666642 376555554 231 11 0112111123333333344433222
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCC--ceeEEEecCC
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 593 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~~ 593 (715)
.+-+.++|+|.||.+.-.++.+.|+ .++-.|.+++
T Consensus 94 ~~G~naIGfSQGglflRa~ierc~~~p~V~nlISlgg 130 (306)
T PLN02606 94 SEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGG 130 (306)
T ss_pred cCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecC
Confidence 2358999999999999999988876 4777776554
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.43 E-value=7 Score=40.98 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=44.0
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccce---eee--eeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCC
Q 005093 185 SVGQVVWAPLNEGLHQYLVFVGWSSETRK---LGI--KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 259 (715)
Q Consensus 185 ~~~~~~~spdg~~~~~~i~~~~~~~~~~~---~g~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 259 (715)
....+.|.|||+ |+++........ .+. .........|++++. .+++.+.+...
T Consensus 125 ~~~~l~~gpDG~-----LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p-----------------dg~~~e~~a~G 182 (367)
T TIGR02604 125 SLNSLAWGPDGW-----LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP-----------------DGGKLRVVAHG 182 (367)
T ss_pred cccCceECCCCC-----EEEecccCCCceeccCCCccCcccccCceEEEEec-----------------CCCeEEEEecC
Confidence 355789999996 777543211000 000 000112246999996 67777777766
Q ss_pred CccccceeEcCCCCeEEEEec
Q 005093 260 ISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 260 ~~~~~~~~~spdg~~l~~~~~ 280 (715)
.......+|+|+|+ |+++.+
T Consensus 183 ~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 183 FQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred cCCCccceECCCCC-EEEEcc
Confidence 66678899999987 445544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.42 E-value=3.4 Score=42.49 Aligned_cols=208 Identities=11% Similarity=0.129 Sum_probs=111.6
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCc-cEE-EEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ-LEK-EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
+++...+|-|--.+-..+.-...++-.+|.+...++ ... ....+.+ +.++++.|+|....-+|++.-
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs--------~~Vs~l~F~P~n~s~i~ssSy--- 255 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS--------GPVSGLKFSPANTSQIYSSSY--- 255 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC--------ccccceEecCCChhheeeecc---
Confidence 668888998888733333333336656666641111 111 1111111 123899999987665565331
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC-CCCCCccceEEEecCCCCCc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~~~~spdg~~~~ 199 (715)
...|...|++++....+-. -........+.++.+.+.
T Consensus 256 ----------------------------------------DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~-- 293 (498)
T KOG4328|consen 256 ----------------------------------------DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRS-- 293 (498)
T ss_pred ----------------------------------------CceeeeeeecchhhHHHhhcCccceeeeeccccCCCcc--
Confidence 2558888888776544320 124456777888888887
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEe
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~ 279 (715)
++|..+.. ...++.... .+.+...+.-++..+.+..+.|--.+++-++
T Consensus 294 --vl~~~~~G-------------~f~~iD~R~-----------------~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~ 341 (498)
T KOG4328|consen 294 --VLFGDNVG-------------NFNVIDLRT-----------------DGSEYENLRLHKKKITSVALNPVCPWFLATA 341 (498)
T ss_pred --EEEeeccc-------------ceEEEEeec-----------------CCccchhhhhhhcccceeecCCCCchheeec
Confidence 88876311 113444432 3344555555555788889999877765555
Q ss_pred cCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 005093 280 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359 (715)
Q Consensus 280 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l 359 (715)
..+. .+.++|+..-..+.- +++.... +..++....|||+|-.| +++..+...+|
T Consensus 342 s~D~----------T~kIWD~R~l~~K~s--------p~lst~~-------HrrsV~sAyFSPs~gtl-~TT~~D~~IRv 395 (498)
T KOG4328|consen 342 SLDQ----------TAKIWDLRQLRGKAS--------PFLSTLP-------HRRSVNSAYFSPSGGTL-LTTCQDNEIRV 395 (498)
T ss_pred ccCc----------ceeeeehhhhcCCCC--------cceeccc-------ccceeeeeEEcCCCCce-EeeccCCceEE
Confidence 4331 234455433111110 0110000 22356677799988874 55554554555
Q ss_pred EE
Q 005093 360 IS 361 (715)
Q Consensus 360 ~~ 361 (715)
|-
T Consensus 396 ~d 397 (498)
T KOG4328|consen 396 FD 397 (498)
T ss_pred ee
Confidence 53
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=92.41 E-value=5.5 Score=40.00 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=31.0
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCC----CcEEEecCCCC-CceeEEEeecC---CEEEEEEeC
Q 005093 337 SNPWLSDGCTMLLSSIWGSSQVIISVNVSS----GELLRITPAES-NFSWSLLTLDG---DNIIAVSSS 397 (715)
Q Consensus 337 ~~~~~~dg~~l~~~~~~~~~~~l~~~d~~t----g~~~~l~~~~~-~~~~~~~s~~~---~~l~~~~~~ 397 (715)
.....++|. |||+-.. ...|++++..+ .....+..... ......++.+. +.|+++++.
T Consensus 190 g~~~D~~G~-ly~~~~~--~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 190 GMAIDPNGN-LYFTDVE--QNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEEETTTE-EEEEECC--CTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred eEEECCCCc-EEEecCC--CCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 345566664 7665543 35899999875 35555655444 22333455544 566666543
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.3 Score=48.11 Aligned_cols=145 Identities=15% Similarity=0.148 Sum_probs=81.8
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 123 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 123 (715)
....+-+|=...+||-. ...+.++. +.-....++..... .++.++||++|++++-.--
T Consensus 40 ~~gLa~~p~Sgl~aYpA-----GCvVVlfn~~~~tQ~hlvnssRk---------~~t~vAfS~~GryvatGEc------- 98 (1080)
T KOG1408|consen 40 ANGLASVPCSGLCAYPA-----GCVVVLFNVDSCTQSHLVNSSRK---------PLTCVAFSQNGRYVATGEC------- 98 (1080)
T ss_pred CCcccccccccceeecc-----CcEEEEEcccccchhheecccCc---------ceeEEEEcCCCcEEEeccc-------
Confidence 34556677777788762 22333333 22222233332211 2379999999998776210
Q ss_pred CccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE-eecCCCCCCccceEEEecCCCCCccEE
Q 005093 124 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYL 202 (715)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~spdg~~~~~~i 202 (715)
| ..+.+.||+++...+. .+ .+..+.+...+|||.++. |
T Consensus 99 -----------------------------G------~~pa~kVw~la~h~vVAEf--vdHKY~vtcvaFsp~~ky----v 137 (1080)
T KOG1408|consen 99 -----------------------------G------RTPASKVWSLAFHGVVAEF--VDHKYNVTCVAFSPGNKY----V 137 (1080)
T ss_pred -----------------------------C------CCccceeeeeccccchhhh--hhccccceeeeecCCCcE----E
Confidence 1 2367889999765432 23 455667888999999998 8
Q ss_pred EEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 203 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 203 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
+-++...+.- -+..-|++++ .+...++. ..+...+||.||.+.+-..++
T Consensus 138 vSVGsQHDMI---------Vnv~dWr~N~------------------~~asnkis---s~Vsav~fsEdgSYfvT~gnr 186 (1080)
T KOG1408|consen 138 VSVGSQHDMI---------VNVNDWRVNS------------------SGASNKIS---SVVSAVAFSEDGSYFVTSGNR 186 (1080)
T ss_pred EeeccccceE---------EEhhhhhhcc------------------cccccccc---eeEEEEEEccCCceeeeeeee
Confidence 8766322210 0001223332 12222222 246778999999988766554
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.33 E-value=9.6 Score=39.24 Aligned_cols=145 Identities=11% Similarity=0.095 Sum_probs=83.2
Q ss_pred CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 161 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
...|.+||+++|+..... +..+..+..+.|.|.... ++.++.. ...+.+.|.
T Consensus 265 D~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~----~LLsGs~--------------D~~V~l~D~--------- 316 (463)
T KOG0270|consen 265 DKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPS----VLLSGSY--------------DGTVALKDC--------- 316 (463)
T ss_pred CceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCce----EEEeccc--------------cceEEeeec---------
Confidence 378999999999987763 224456888999998887 6666532 224556664
Q ss_pred hhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 241 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
+.......--.-.+.+..+.|.|-....+|.+.++ | .||-+|+...+. . +|.
T Consensus 317 -------R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd----G------~v~~~D~R~~~~-~----------vwt 368 (463)
T KOG0270|consen 317 -------RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD----G------TVYYFDIRNPGK-P----------VWT 368 (463)
T ss_pred -------cCccccCceEEeccceEEEEecCCCceeEEEecCC----c------eEEeeecCCCCC-c----------eeE
Confidence 11111111111233567788888777777777554 2 477777655331 0 110
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 368 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~ 368 (715)
.. .+...+..++..+.-..++.+........||.++....+
T Consensus 369 ~~-------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 369 LK-------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EE-------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 00 122245555555544446666555566678887765543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=92.32 E-value=17 Score=38.29 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=33.6
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 343 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 343 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
++..+|+... ...|+.+|..+|+...-...............++.+++...+ ..|+.++..+++
T Consensus 278 ~~~~vyv~~~---~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~----G~l~~~d~~tG~ 341 (377)
T TIGR03300 278 DDNRLYVTDA---DGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFE----GYLHWLSREDGS 341 (377)
T ss_pred eCCEEEEECC---CCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCC----CEEEEEECCCCC
Confidence 4455766542 357999999999765432111100111122345666654322 357777765553
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.27 E-value=2.2 Score=46.29 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=35.3
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEe---cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
+.+.+....|..+.++|.-. +.+.+..+| .+.=-+..+.... . ..+.+++|..||++|..+-++
T Consensus 70 H~~sV~vvTWNe~~QKLTtS-----Dt~GlIiVWmlykgsW~EEMiNnRn-K-------SvV~SmsWn~dG~kIcIvYeD 136 (1189)
T KOG2041|consen 70 HNASVMVVTWNENNQKLTTS-----DTSGLIIVWMLYKGSWCEEMINNRN-K-------SVVVSMSWNLDGTKICIVYED 136 (1189)
T ss_pred CcceEEEEEecccccccccc-----CCCceEEEEeeecccHHHHHhhCcC-c-------cEEEEEEEcCCCcEEEEEEcc
Confidence 44557777777777776522 223455555 3321111111100 0 012589999999999997654
|
|
| >PLN02633 palmitoyl protein thioesterase family protein | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.7 Score=43.21 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=58.4
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
.+.| +|+.||-+............+.+.+ -|.-+.++..-. + . ...+.....+.+..+-+.|.+....
T Consensus 24 ~~~P-~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~ig~-~-~--------~~s~~~~~~~Qve~vce~l~~~~~l 92 (314)
T PLN02633 24 VSVP-FIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEIGN-G-V--------GDSWLMPLTQQAEIACEKVKQMKEL 92 (314)
T ss_pred CCCC-eEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEECC-C-c--------cccceeCHHHHHHHHHHHHhhchhh
Confidence 3456 6778995544433455555555544 356666654322 1 1 1112222223333333344433222
Q ss_pred CCceEEEEEeChhHHHHHHHHhhCCC--ceeEEEecCCc
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPL 594 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~~~ 594 (715)
.+-+.++|+|.||.++-.++.+.|+ .++..|.+++.
T Consensus 93 -~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlggp 130 (314)
T PLN02633 93 -SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAGP 130 (314)
T ss_pred -hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecCC
Confidence 2358999999999999999988876 47777766653
|
|
| >cd00519 Lipase_3 Lipase (class 3) | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.31 Score=47.28 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-----CCceeEEEecCCcc
Q 005093 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLC 595 (715)
Q Consensus 542 ~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~~~~ 595 (715)
.++...+..+.++. ...+|.+.|||+||.+|..++... +..+.+....+|.+
T Consensus 112 ~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 112 NQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 34444444444442 357899999999999999877642 23456666666543
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.98 Score=47.62 Aligned_cols=110 Identities=19% Similarity=0.194 Sum_probs=59.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHH-----------------HHHHHhCCcEEEEEcCCCCCCCchh
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS-----------------LAFLSSVGYSLLIVNYRGSLGFGEE 527 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~-----------------~~~la~~G~~vi~~d~rG~~~~g~~ 527 (715)
+..|.+.+. ....++|+|+++.|||+.......... ..-+... -.++.+|.+-..||..+
T Consensus 87 ~ffy~fe~~--ndp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a 163 (498)
T COG2939 87 FFFYTFESP--NDPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRA 163 (498)
T ss_pred EEEEEecCC--CCCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccc
Confidence 444555543 256789999999999976432111100 0001111 24677786655556554
Q ss_pred hhhcCCCCCCccchhhHHHHHHHHHH----cCCCCCceEEEEEeChhHHHHHHHHh
Q 005093 528 ALQSLPGKVGSQDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIG 579 (715)
Q Consensus 528 ~~~~~~~~~~~~~~~d~~~~i~~l~~----~~~~d~~~i~l~G~S~GG~~a~~~a~ 579 (715)
.......+. ...-+|+..+.+.+.+ .. -...+.+|+|.|+||+-+..+|.
T Consensus 164 ~~~e~~~d~-~~~~~D~~~~~~~f~~~fp~~~-r~~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 164 LGDEKKKDF-EGAGKDVYSFLRLFFDKFPHYA-RLLSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred cccccccch-hccchhHHHHHHHHHHHHHHHh-hhcCceeEeeccccchhhHHHHH
Confidence 211111111 1123455555544433 22 12358899999999998877764
|
|
| >PLN02517 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.32 Score=52.32 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=45.7
Q ss_pred cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCC-CCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHH
Q 005093 498 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG-KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 576 (715)
Q Consensus 498 ~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~-~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 576 (715)
.|..+++.|++.||. --++++. .-+|+.+... .....-+..+...|+.+.+.. ...||+|+||||||.+++.
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~gA---PYDWRls~~~le~rd~YF~rLK~lIE~ay~~n--ggkKVVLV~HSMGglv~ly 229 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYMA---AYDWRLSFQNTEVRDQTLSRLKSNIELMVATN--GGKKVVVVPHSMGVLYFLH 229 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceeec---ccccccCccchhhhhHHHHHHHHHHHHHHHHc--CCCeEEEEEeCCchHHHHH
Confidence 457889999999997 4555552 2233222110 000111345556666555431 2579999999999999998
Q ss_pred HHh
Q 005093 577 LIG 579 (715)
Q Consensus 577 ~a~ 579 (715)
++.
T Consensus 230 FL~ 232 (642)
T PLN02517 230 FMK 232 (642)
T ss_pred HHH
Confidence 765
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=25 Score=38.87 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=51.5
Q ss_pred cccceeEcCCCCeEEEEecCCCCCCCCccccceeEe--eecC-CCCCCCcccceeeeeeceecCCCCCccccccCCCCCC
Q 005093 262 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR--IDWP-TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 338 (715)
Q Consensus 262 ~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~--~~~~-~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 338 (715)
.+..++.|+||-+++...... +..+|++ +--. .+..+.|+... .+.. ......+
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~--------g~~~V~va~V~R~~~G~P~~L~~~~----~~~~-----------~~~~~sl 491 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQN--------GKSRVQVAGIVRNEDGTPRELTAPI----TLAA-----------DSDADTG 491 (573)
T ss_pred eeEEEEECCCccEEEEEEEeC--------CccEEEEEEEEeCCCCCeEEccCce----eccc-----------CCCccee
Confidence 388899999999999987653 1234665 3322 33334453221 1100 0134577
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 339 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 339 ~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
.|..++..++......++...+.+.+..|..+.+.
T Consensus 492 ~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~ 526 (573)
T PRK13614 492 AWVGDSTVVVTKASATSNVVPELLSVDAGQPQQLA 526 (573)
T ss_pred EEcCCCEEEEEeccCCCcceEEEEEeCCCCcccCC
Confidence 89988875455444455566777777566655444
|
|
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.55 Score=48.71 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC--------CCceeEEEecCCcc
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLC 595 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~~~~ 595 (715)
.+++...|+.+++...-..-+|.++|||+||.+|..+|... ...+.+....+|-+
T Consensus 209 r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g~~~~~~~V~~~TFGsPRV 271 (414)
T PLN02454 209 RSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENGVSGADIPVTAIVFGSPQV 271 (414)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHHHHhcccccCCceEEEEeCCCcc
Confidence 56777888888776422223599999999999999887531 11345666666654
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.45 E-value=11 Score=41.32 Aligned_cols=160 Identities=9% Similarity=-0.025 Sum_probs=87.9
Q ss_pred eEEeeCCCCceEEEEecCCCCCCeEEEEecCC-ccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 46 SAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
..++.|+||+.+|++... ..+.+...+ ....+.. .... ..++|.++| ++.-+....
T Consensus 337 ~s~avS~dg~~~A~v~~~-----~~l~vg~~~~~~~~~~~-~~~L----------t~PS~d~~g-~vWtv~~g~------ 393 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS-----GVWSVGDGDRDAVLLDT-RPGL----------VAPSLDAQG-YVWSTPASD------ 393 (557)
T ss_pred ccceEcCCCceEEEEcCC-----ceEEEecCCCcceeecc-CCcc----------ccCcCcCCC-CEEEEeCCC------
Confidence 678999999999999432 245555443 4444332 2223 789999999 666442211
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec-CCCCCCccceEEEecCCCCCccEEE
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLV 203 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~-~~~~~~~~~~~~~spdg~~~~~~i~ 203 (715)
...+.... .+|+...+. .......+..++.|+||-+ ++
T Consensus 394 ------------------------------------~~~l~~~~-~~G~~~~v~v~~~~~~~I~~lrvSrDG~R----~A 432 (557)
T PRK13615 394 ------------------------------------PRGLVAWG-PDGVGHPVAVSWTATGRVVSLEVARDGAR----VL 432 (557)
T ss_pred ------------------------------------ceEEEEec-CCCceEEeeccccCCCeeEEEEeCCCccE----EE
Confidence 01122211 233333331 1112235778999999999 98
Q ss_pred EEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceec-CC------CCccccceeEcCCCCeEE
Q 005093 204 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TE------SISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-t~------~~~~~~~~~~spdg~~l~ 276 (715)
......+. .+|++.-+. ..++..+.| +. .-....+..|..+++ |+
T Consensus 433 vi~~~~g~------------~~V~va~V~---------------R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~-la 484 (557)
T PRK13615 433 VQLETGAG------------PQLLVASIV---------------RDGGVPTSLTTTPLELLASPGTPLDATWVDELD-VA 484 (557)
T ss_pred EEEecCCC------------CEEEEEEEE---------------eCCCcceEeeeccEEcccCcCcceeeEEcCCCE-EE
Confidence 87643221 245554331 012323344 32 233578889998887 65
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCC
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNG 304 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~ 304 (715)
.+.... ....+++++.+.+..
T Consensus 485 Vl~~~~-------~~~~~v~~v~v~g~~ 505 (557)
T PRK13615 485 TLTLAP-------DGERQVELHQVGGPS 505 (557)
T ss_pred EEeccC-------CCCceEEEEECCCcc
Confidence 555332 123457888877543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.42 E-value=5.8 Score=40.22 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=23.2
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEE
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 205 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~ 205 (715)
..+.++....+..+.+ .-.-....+++||||++. |+++
T Consensus 132 ~~~di~s~~~~~~~~~--lGhvSml~dVavS~D~~~----Iita 169 (390)
T KOG3914|consen 132 YSFDILSADSGRCEPI--LGHVSMLLDVAVSPDDQF----IITA 169 (390)
T ss_pred eeeeeecccccCcchh--hhhhhhhheeeecCCCCE----EEEe
Confidence 3455555444555444 222236779999999987 6665
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=91.12 E-value=8.7 Score=41.25 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=52.3
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCC
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYAD 96 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (715)
..-.+.+.....+...+|+.|+++ .+..-++||+.++|+..-.++ .+...+...+....+.....+
T Consensus 237 d~ciYE~~r~klqrvsvtsipL~s---~v~~ca~sp~E~kLvlGC~Dg----SiiLyD~~~~~t~~~ka~~~P------- 302 (545)
T PF11768_consen 237 DSCIYECSRNKLQRVSVTSIPLPS---QVICCARSPSEDKLVLGCEDG----SIILYDTTRGVTLLAKAEFIP------- 302 (545)
T ss_pred EEEEEEeecCceeEEEEEEEecCC---cceEEecCcccceEEEEecCC----eEEEEEcCCCeeeeeeecccc-------
Confidence 333444665555555566666653 578889999999999877664 333333333444455544444
Q ss_pred CcccceeecCCCCeEEEEe
Q 005093 97 GWFEGISWNSDETLIAYVA 115 (715)
Q Consensus 97 ~~~~~~~wSpDg~~la~~~ 115 (715)
..++|+|||..++..+
T Consensus 303 ---~~iaWHp~gai~~V~s 318 (545)
T PF11768_consen 303 ---TLIAWHPDGAIFVVGS 318 (545)
T ss_pred ---eEEEEcCCCcEEEEEc
Confidence 6899999998776643
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.45 Score=51.42 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=52.8
Q ss_pred CCcEEEEeeCCCCcCCchHHHHHHHHHHHc-CC-------cEEEEEeCCCCccCCCC-CchHHHHHHHHHHHHH
Q 005093 648 KTPTIFLLGAQDLRVPVSNGLQYARALREK-GV-------ETKVIVFPNDVHGIERP-QSDFESFLNIGLWFKK 712 (715)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~-g~-------~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~wl~~ 712 (715)
-..+|+.||..|..+|+..+..+|+++.+. +. -.++..+||.+|....+ ....+.+..+.+|.++
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 368999999999999999999999998765 21 36899999999976543 2334788999999975
|
It also includes several bacterial homologues of unknown function. |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.64 E-value=24 Score=36.85 Aligned_cols=35 Identities=9% Similarity=0.146 Sum_probs=23.6
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
..+.+|++.++...... ......+..+.|+|+++.
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 178 GTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred CceEEEEcCCCceEEee-ccCCCceEEEEEcCCcce
Confidence 66888888775544431 223456778899999985
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.52 E-value=11 Score=41.19 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=18.6
Q ss_pred ccccceeEcCCCCeEEEEecCCC
Q 005093 261 SSAFFPRFSPDGKFLVFLSAKSS 283 (715)
Q Consensus 261 ~~~~~~~~spdg~~l~~~~~~~~ 283 (715)
-.+....|+|+|..|+...+..+
T Consensus 259 m~~vgakWnh~G~vLAvcG~~~d 281 (1189)
T KOG2041|consen 259 MKIVGAKWNHNGAVLAVCGNDSD 281 (1189)
T ss_pred cEeecceecCCCcEEEEccCccc
Confidence 34677899999999998887653
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.31 E-value=8.9 Score=41.96 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=72.3
Q ss_pred CCcccCCcCcccCCccCceEEEEEccCCceEeec-CCCC-CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecC
Q 005093 145 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 222 (715)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~-~~~~-~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~ 222 (715)
++...|.|+-....-...+|.+++++.|+....- +..+ +...-.+...|.|-. |+.+. .
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY----~atSc---------------s 661 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY----LATSC---------------S 661 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE----EEEee---------------c
Confidence 4455677755544444578999999999877762 1111 122334566777765 55543 1
Q ss_pred CceEEEEecccccchhhhhhhhccCCCCCCc-eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecC
Q 005093 223 PCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 301 (715)
Q Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~ 301 (715)
+-.|..+|+ -+|+. .+.+.+...+....|++|=|.|+-++.+. -||++.++
T Consensus 662 dktl~~~Df-----------------~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg-----------CIFvW~lp 713 (1080)
T KOG1408|consen 662 DKTLCFVDF-----------------VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG-----------CIFVWKLP 713 (1080)
T ss_pred CCceEEEEe-----------------ccchhhhhhcCcchheeeeeecccchhheeecCCc-----------eEEEEECc
Confidence 226888887 56665 46677666788899999999998777552 37777765
Q ss_pred C
Q 005093 302 T 302 (715)
Q Consensus 302 ~ 302 (715)
-
T Consensus 714 ~ 714 (1080)
T KOG1408|consen 714 L 714 (1080)
T ss_pred h
Confidence 5
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=90.23 E-value=6.6 Score=41.15 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=25.4
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCC
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~ 196 (715)
..++.+++++++.+.+ ..+-.....++|+|+|+
T Consensus 164 g~i~r~~pdg~~~e~~--a~G~rnp~Gl~~d~~G~ 196 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVV--AHGFQNPYGHSVDSWGD 196 (367)
T ss_pred ceEEEEecCCCeEEEE--ecCcCCCccceECCCCC
Confidence 5799999999988877 34433456789999987
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.04 E-value=33 Score=38.96 Aligned_cols=205 Identities=13% Similarity=0.123 Sum_probs=120.2
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
.++-..+|.|.--||.-.--. .+..+| .-+.....++ .| ||++.++.|.|++-. |++..
T Consensus 10 sRvKglsFHP~rPwILtslHs-----G~IQlWDYRM~tli~rFd----eH-----dGpVRgv~FH~~qpl--FVSGG--- 70 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHS-----GVIQLWDYRMGTLIDRFD----EH-----DGPVRGVDFHPTQPL--FVSGG--- 70 (1202)
T ss_pred ccccceecCCCCCEEEEeecC-----ceeeeehhhhhhHHhhhh----cc-----CCccceeeecCCCCe--EEecC---
Confidence 456677888998888754222 345566 3333332221 12 233489999998863 33221
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE-eecCCCCC-CccceEEEecCCCCC
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKS-LSVGQVVWAPLNEGL 198 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~l~~~~~~-~~~~~~~~spdg~~~ 198 (715)
....|-||+.++.+.. .| .+. ..+....|.+.=..
T Consensus 71 ---------------------------------------DDykIkVWnYk~rrclftL---~GHlDYVRt~~FHheyPW- 107 (1202)
T KOG0292|consen 71 ---------------------------------------DDYKIKVWNYKTRRCLFTL---LGHLDYVRTVFFHHEYPW- 107 (1202)
T ss_pred ---------------------------------------CccEEEEEecccceehhhh---ccccceeEEeeccCCCce-
Confidence 1366888888655422 22 122 24556667777666
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCccccceeEcCCCCeEEE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~ 277 (715)
|+..+ -++.|.+++. ++.. +..||.+.-.+--..|.|....++-
T Consensus 108 ---IlSAS---------------DDQTIrIWNw-----------------qsr~~iavltGHnHYVMcAqFhptEDlIVS 152 (1202)
T KOG0292|consen 108 ---ILSAS---------------DDQTIRIWNW-----------------QSRKCIAVLTGHNHYVMCAQFHPTEDLIVS 152 (1202)
T ss_pred ---EEEcc---------------CCCeEEEEec-----------------cCCceEEEEecCceEEEeeccCCccceEEE
Confidence 66554 2235666665 5544 4567888878888899998887877
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCCcccc------------------eeeeeeceecCCCCCccccccCCCCCCc
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK------------------IVDVIPVVQCAEGDCFPGLYSSSILSNP 339 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 339 (715)
.|-+. .+.++|+++-..+....+ .|.++..+-.+ ++.++...+
T Consensus 153 aSLDQ-----------TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG--------HDRGVNwaA 213 (1202)
T KOG0292|consen 153 ASLDQ-----------TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG--------HDRGVNWAA 213 (1202)
T ss_pred ecccc-----------eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc--------cccccceEE
Confidence 66553 367777766333332222 12233333222 334666667
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEEC
Q 005093 340 WLSDGCTMLLSSIWGSSQVIISVNV 364 (715)
Q Consensus 340 ~~~dg~~l~~~~~~~~~~~l~~~d~ 364 (715)
|.|-- -++++..++....||+++-
T Consensus 214 fhpTl-pliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 214 FHPTL-PLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred ecCCc-ceEEecCCcceeeEEEecc
Confidence 77654 3777777777788999985
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.74 E-value=20 Score=38.45 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=60.0
Q ss_pred cCceEEEEEccCCceEeecCCCCCC-ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh
Q 005093 160 RQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238 (715)
Q Consensus 160 ~~~~l~~~~~~~g~~~~l~~~~~~~-~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 238 (715)
....++++++.+|+...-..+.... .+....|+.+-. .+|+.. ...++..+++
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-----ciyS~~--------------ad~~v~~~~~------- 131 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-----CIYSVG--------------ADLKVVYILE------- 131 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-----ceEecC--------------CceeEEEEec-------
Confidence 4577999999999876542122222 233444554443 555542 2235666665
Q ss_pred hhhhhhccCCCCCCceecCCC-CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 239 SELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 239 ~~~~~~~~~~~~~~~~~lt~~-~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
..+...++-.. .....+...||||+.|+..+ .+|-++|+.+++.
T Consensus 132 ----------~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-------------~~ik~~~~~~kev 176 (541)
T KOG4547|consen 132 ----------KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-------------RQIKVLDIETKEV 176 (541)
T ss_pred ----------ccceeeeeeccCCCccceEEEcCCCCEEEecc-------------ceEEEEEccCceE
Confidence 55555555443 33578899999999887554 3488889888765
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.73 E-value=5.7 Score=37.38 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=54.6
Q ss_pred CCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCcccccee--EeeecCCCCCCCcccceeeeeeceecCC-CC
Q 005093 249 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL--HRIDWPTNGNFSSLEKIVDVIPVVQCAE-GD 325 (715)
Q Consensus 249 ~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l--~~~~~~~~~~~~lt~~~~~~~~~~~~~~-~~ 325 (715)
.++++..+-+.-+-.....|+.|-|+++|+...+ ..+ |-+|+++|... ..+.+..+-.... +.
T Consensus 146 ~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln----------~~V~a~dyd~~tG~~s----nr~~i~dlrk~~~~e~ 211 (310)
T KOG4499|consen 146 AGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLN----------YEVDAYDYDCPTGDLS----NRKVIFDLRKSQPFES 211 (310)
T ss_pred cCCCceeeehhccCCccccccccCcEEEEEccCc----------eEEeeeecCCCccccc----CcceeEEeccCCCcCC
Confidence 4566666555444456789999999999988653 345 66668876641 1112222211111 11
Q ss_pred CccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 005093 326 CFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 371 (715)
Q Consensus 326 ~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 371 (715)
.+| ..++...+|+ |++..-.+ .+++++|+.||+...
T Consensus 212 ~~P-------DGm~ID~eG~-L~Va~~ng--~~V~~~dp~tGK~L~ 247 (310)
T KOG4499|consen 212 LEP-------DGMTIDTEGN-LYVATFNG--GTVQKVDPTTGKILL 247 (310)
T ss_pred CCC-------CcceEccCCc-EEEEEecC--cEEEEECCCCCcEEE
Confidence 111 2333444554 44443333 478899999888643
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.73 E-value=11 Score=37.85 Aligned_cols=165 Identities=13% Similarity=0.185 Sum_probs=87.8
Q ss_pred CceEEEEEccCCceEeecCCCCCC-ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 161 QPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~-~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
...+-+||+++|++..- .++.+ .+..+++|+--. .+|++.. ..+|-.+||
T Consensus 172 DrtikIwDlatg~Lklt--ltGhi~~vr~vavS~rHp-----YlFs~ge--------------dk~VKCwDL-------- 222 (460)
T KOG0285|consen 172 DRTIKIWDLATGQLKLT--LTGHIETVRGVAVSKRHP-----YLFSAGE--------------DKQVKCWDL-------- 222 (460)
T ss_pred CceeEEEEcccCeEEEe--ecchhheeeeeeecccCc-----eEEEecC--------------CCeeEEEec--------
Confidence 37799999999987653 34333 466788888665 4565532 236778887
Q ss_pred hhhhhccCCCCCCc-eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC-Ccccceeeeee
Q 005093 240 ELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIP 317 (715)
Q Consensus 240 ~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~ 317 (715)
+..+. +.-..+-..+......|.-+.| ++..++ ..+.++|+.+.... .+...
T Consensus 223 ---------e~nkvIR~YhGHlS~V~~L~lhPTldvl-~t~grD----------st~RvWDiRtr~~V~~l~GH------ 276 (460)
T KOG0285|consen 223 ---------EYNKVIRHYHGHLSGVYCLDLHPTLDVL-VTGGRD----------STIRVWDIRTRASVHVLSGH------ 276 (460)
T ss_pred ---------hhhhhHHHhccccceeEEEeccccceeE-EecCCc----------ceEEEeeecccceEEEecCC------
Confidence 44433 3333334456667777776655 444443 23566777664331 12111
Q ss_pred ceecCCCCCccccccCCCCCCcccc-CCCEEEEEeeeCCeeEEEEEECCCCc-EEEecCCCCCceeEEEeecCCEEEEEE
Q 005093 318 VVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 318 ~~~~~~~~~~~g~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
...+..+.+.| |+. + ++.+.++..+| +|+..|+ ...++.... ++..++.......|.+
T Consensus 277 --------------~~~V~~V~~~~~dpq-v-it~S~D~tvrl--WDl~agkt~~tlt~hkk--svral~lhP~e~~fAS 336 (460)
T KOG0285|consen 277 --------------TNPVASVMCQPTDPQ-V-ITGSHDSTVRL--WDLRAGKTMITLTHHKK--SVRALCLHPKENLFAS 336 (460)
T ss_pred --------------CCcceeEEeecCCCc-e-EEecCCceEEE--eeeccCceeEeeecccc--eeeEEecCCchhhhhc
Confidence 11223333433 443 3 34444444445 5766555 444555554 4445554444555555
Q ss_pred eCCCC
Q 005093 396 SSPVD 400 (715)
Q Consensus 396 ~~~~~ 400 (715)
++++.
T Consensus 337 as~dn 341 (460)
T KOG0285|consen 337 ASPDN 341 (460)
T ss_pred cCCcc
Confidence 54443
|
|
| >PLN02408 phospholipase A1 | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.52 Score=48.21 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhh
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 580 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 580 (715)
.+++.+.|..+++...-...+|.+.|||+||.+|..+|..
T Consensus 181 r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 181 QEMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 3566677777776542223469999999999999987754
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.17 E-value=20 Score=39.44 Aligned_cols=63 Identities=8% Similarity=-0.006 Sum_probs=36.3
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCcc--EEEEecCccccccccCCCcccceeecCCCCeEEE
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAY 113 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~ 113 (715)
+.......|++...+|+...++ ..-++.+...+.. ..++.........| +.+.||+||+++++
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g--~V~v~ql~~~~p~~~~~~t~~d~~~~~rV------Tal~Ws~~~~k~ys 141 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASG--RVSVFQLNKELPRDLDYVTPCDKSHKCRV------TALEWSKNGMKLYS 141 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCc--eEEeehhhccCCCcceeeccccccCCceE------EEEEecccccEEee
Confidence 4466677899988888765442 2223333332222 22333333212233 89999999999977
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.07 E-value=25 Score=39.34 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=49.3
Q ss_pred cccceeEcCCCCeEEEEecCCCCCCCCccccceeEe--eecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCc
Q 005093 262 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR--IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 339 (715)
Q Consensus 262 ~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~--~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 339 (715)
.+..++.|+||-+++...... +..+|++ +.-...+.+.|+... .+.... .....+.
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~--------g~~~v~va~V~R~~~G~~~l~~~~----~l~~~l----------~~v~~~~ 513 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKD--------GRRSLQIGRIVRDAKAVVSVEEFR----SLAPEL----------EDVTDMS 513 (599)
T ss_pred EeEEEEECCCccEEEEEEecC--------CCcEEEEEEEEeCCCCcEEeeccE----EeccCC----------CccceeE
Confidence 588899999999999987653 1234554 333333323443211 110000 0245778
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 005093 340 WLSDGCTMLLSSIWGSSQVIISVNVSSGEL 369 (715)
Q Consensus 340 ~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~ 369 (715)
|..+++.+++.....+...+|.+++++...
T Consensus 514 W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 514 WAGDSQLVVLGREEGGVQQARYVQVDGSTP 543 (599)
T ss_pred EcCCCEEEEEeccCCCCcceEEEecCCcCc
Confidence 998876444344445567789999875443
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=88.98 E-value=25 Score=39.30 Aligned_cols=167 Identities=13% Similarity=0.056 Sum_probs=88.3
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCc----cEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQ----LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
....++.|+||+.+|++... ...++.=. .++. ...++. ... +..++|.++| ++.-+ +.
T Consensus 364 ~~~s~avS~~g~~~A~v~~~---~~~l~vg~~~~~~~~~~~~~~~~~-~~~----------Lt~PS~d~~g-~vWtv-d~ 427 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISAD---GDSVYVGSLTPGASIGVHSWGVTA-DGR----------LTSPSWDGRG-DLWVV-DR 427 (599)
T ss_pred CccceEEcCCCceEEEEcCC---CcEEEEeccCCCCccccccceeec-cCc----------ccCCcCcCCC-CEEEe-cC
Confidence 46788999999999999542 22333311 1222 112222 112 3799999998 66654 11
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCC-CCCccceEEEecCCC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNE 196 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~~~~~~~~~~spdg~ 196 (715)
... +...|.+..- +|+...+.... ....+..++.|+||-
T Consensus 428 ~~~---------------------------------------~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~ 467 (599)
T PRK13613 428 DPA---------------------------------------DPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGV 467 (599)
T ss_pred CCC---------------------------------------CceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCcc
Confidence 100 0122334432 45544442111 112577899999999
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC------CCccccceeEcC
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE------SISSAFFPRFSP 270 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~------~~~~~~~~~~sp 270 (715)
+ +++.....+. .+|++.-+.- -..+. ..|+. .-....+..|..
T Consensus 468 R----vAvv~~~~g~------------~~v~va~V~R--------------~~~G~-~~l~~~~~l~~~l~~v~~~~W~~ 516 (599)
T PRK13613 468 R----VALIVEKDGR------------RSLQIGRIVR--------------DAKAV-VSVEEFRSLAPELEDVTDMSWAG 516 (599)
T ss_pred E----EEEEEecCCC------------cEEEEEEEEe--------------CCCCc-EEeeccEEeccCCCccceeEEcC
Confidence 9 9988643221 2344332200 02332 33333 233467899998
Q ss_pred CCCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 271 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 271 dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
++. |+.+.... .....++.+++++...
T Consensus 517 ~~s-L~Vlg~~~-------~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 517 DSQ-LVVLGREE-------GGVQQARYVQVDGSTP 543 (599)
T ss_pred CCE-EEEEeccC-------CCCcceEEEecCCcCc
Confidence 887 55543221 1234588888886543
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.89 E-value=44 Score=38.73 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=36.0
Q ss_pred EeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCc--cccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 48 VVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 48 ~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
...|||.+.+++..+-.+.-.+.+ ... ..+..+.. ..+.....++.+..+.|||.|+.|+|+....
T Consensus 102 ~~~s~d~~~~~~~~~~~~~~rhs~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~~n 169 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKKRFRHSY---TAK--YHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLHNN 169 (755)
T ss_pred cccChhhhhheeccCcccccceee---EEE--EEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEecc
Confidence 477899999988766431111100 000 01111111 1133333444557899999999999987643
|
|
| >PLN02571 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=88.85 E-value=0.62 Score=48.40 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhh
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 580 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 580 (715)
.+++.+.|..+.+...-..-+|.+.|||+||.+|..+|..
T Consensus 207 r~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 207 RDQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 4567777777766542122379999999999999987753
|
|
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=88.79 E-value=0.25 Score=51.14 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHH
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 578 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a 578 (715)
..-+.+++++|.+++.-+.++|.|.|.|+||+.++..+
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 44677889999998667789999999999999888654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=88.71 E-value=18 Score=39.23 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=24.0
Q ss_pred ceEEEEEccCCceEeec-CCCCCCccceEEEecCCCC
Q 005093 162 PSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~-~~~~~~~~~~~~~spdg~~ 197 (715)
..+..||+++++..-.. -......+...+|.|+.+.
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~ 158 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPA 158 (720)
T ss_pred ceeeeeeeccceeecceeecccccccchhhhccCCCc
Confidence 77899999887654331 0122234667899999985
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.61 E-value=26 Score=34.45 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=56.3
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
..++..++||.++.|+..+ .+ ++-.+|.+... .....+.....+ -...|.++. .++...
T Consensus 14 d~IS~v~f~~~~~~LLvss-WD-gslrlYdv~~~-~l~~~~~~~~pl----------L~c~F~d~~-~~~~G~------- 72 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSS-WD-GSLRLYDVPAN-SLKLKFKHGAPL----------LDCAFADES-TIVTGG------- 72 (323)
T ss_pred hceeeEEEcCcCCcEEEEe-cc-CcEEEEeccch-hhhhheecCCce----------eeeeccCCc-eEEEec-------
Confidence 5689999999999988665 54 55555555432 222222222222 455666533 344421
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCC
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~ 196 (715)
-..+|.++|+++++..++ ...+..+..+.+++--.
T Consensus 73 -------------------------------------~dg~vr~~Dln~~~~~~i--gth~~~i~ci~~~~~~~ 107 (323)
T KOG1036|consen 73 -------------------------------------LDGQVRRYDLNTGNEDQI--GTHDEGIRCIEYSYEVG 107 (323)
T ss_pred -------------------------------------cCceEEEEEecCCcceee--ccCCCceEEEEeeccCC
Confidence 237799999999988888 45555555666665333
|
|
| >KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.24 E-value=0.85 Score=47.57 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=47.1
Q ss_pred cchHHHHHHHhCCcE----EE--EEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhH
Q 005093 498 SYSKSLAFLSSVGYS----LL--IVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 571 (715)
Q Consensus 498 ~~~~~~~~la~~G~~----vi--~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG 571 (715)
.|..+++.|+.-||. ++ ..|.|-+.. ..+-...-+..+...|+...+.. ..+||.|++|||||
T Consensus 125 ~w~~~i~~lv~~GYe~~~~l~ga~YDwRls~~---------~~e~rd~yl~kLK~~iE~~~~~~--G~kkVvlisHSMG~ 193 (473)
T KOG2369|consen 125 YWHELIENLVGIGYERGKTLFGAPYDWRLSYH---------NSEERDQYLSKLKKKIETMYKLN--GGKKVVLISHSMGG 193 (473)
T ss_pred HHHHHHHHHHhhCcccCceeeccccchhhccC---------ChhHHHHHHHHHHHHHHHHHHHc--CCCceEEEecCCcc
Confidence 567788889998887 33 345554210 00111111344555555554442 34899999999999
Q ss_pred HHHHHHHhhCCC
Q 005093 572 FLTTHLIGQAPD 583 (715)
Q Consensus 572 ~~a~~~a~~~p~ 583 (715)
.+....+..+++
T Consensus 194 l~~lyFl~w~~~ 205 (473)
T KOG2369|consen 194 LYVLYFLKWVEA 205 (473)
T ss_pred HHHHHHHhcccc
Confidence 999999887765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.22 E-value=6.2 Score=42.61 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=31.0
Q ss_pred CCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCC
Q 005093 250 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 250 ~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
..+...|-.+...++....++||++++-++.+. .|.++|+..
T Consensus 203 ~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg-----------tIrlWdLgq 244 (735)
T KOG0308|consen 203 CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG-----------TIRLWDLGQ 244 (735)
T ss_pred ccceeeeeccccceEEEEEcCCCCeEeecCCCc-----------eEEeeeccc
Confidence 445667777777889999999999998777663 366777644
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=39 Score=35.79 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=35.0
Q ss_pred CEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 345 CTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 345 ~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
..+|+.+. ...|+.+|+++|+...-..-.. ......+++.+++.... ..++.++..+++
T Consensus 257 ~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~---~~~~~~~~~~vy~~~~~----g~l~ald~~tG~ 315 (394)
T PRK11138 257 GVVYALAY---NGNLVALDLRSGQIVWKREYGS---VNDFAVDGGRIYLVDQN----DRVYALDTRGGV 315 (394)
T ss_pred CEEEEEEc---CCeEEEEECCCCCEEEeecCCC---ccCcEEECCEEEEEcCC----CeEEEEECCCCc
Confidence 34666543 2479999999998654332211 11234466777775532 458888876553
|
|
| >PLN02324 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=88.01 E-value=0.78 Score=47.57 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHh
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 579 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 579 (715)
.+.+.+.|..+++...-..-+|.+.|||+||.+|..+|.
T Consensus 196 reqVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~ 234 (415)
T PLN02324 196 QEQVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAA 234 (415)
T ss_pred HHHHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHH
Confidence 456667777777764212247999999999999998875
|
|
| >PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase | Back alignment and domain information |
|---|
Probab=87.61 E-value=0.87 Score=41.61 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=48.2
Q ss_pred CcEEEEeeCCCCcCCchHHHHHHHHHHHcCC-cEEEEEeCCCCcc--CCCCCchHHHHHHHHHHHHHh
Q 005093 649 TPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHG--IERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+++|-+-|+.|.++.+.|+....+....... ....++.+++||. |.....+.+++-.|.+|+.++
T Consensus 135 taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~~ 202 (202)
T PF06850_consen 135 TALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQH 202 (202)
T ss_pred ceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHhC
Confidence 6888899999999999998776554332211 2456788899996 555666777888899998764
|
This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid. |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.08 E-value=15 Score=38.22 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=26.5
Q ss_pred ceEEEEEccCCceEeecCCCCCC-ccceEEEecCCCC
Q 005093 162 PSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEG 197 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~-~~~~~~~spdg~~ 197 (715)
.+||+|.+.+|++..+ ....+ .+.-..||-||..
T Consensus 103 g~lYlWelssG~LL~v--~~aHYQ~ITcL~fs~dgs~ 137 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNV--LSAHYQSITCLKFSDDGSH 137 (476)
T ss_pred CcEEEEEeccccHHHH--HHhhccceeEEEEeCCCcE
Confidence 6799999999998766 33333 5778899999985
|
|
| >PLN02802 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=87.04 E-value=0.94 Score=48.06 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhh
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 580 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 580 (715)
.+++.+.|..+.+...-..-+|.|.|||+||.+|..+|..
T Consensus 311 reqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 311 SESVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADE 350 (509)
T ss_pred HHHHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHH
Confidence 3566777777776542222479999999999999987753
|
|
| >PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function | Back alignment and domain information |
|---|
Probab=86.66 E-value=5.5 Score=39.78 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=32.4
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhh
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 580 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 580 (715)
.....+..+..+|.++. -..++|.++|+|.|++.|-.++..
T Consensus 72 g~~~~I~~ay~~l~~~~-~~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 72 GIEARIRDAYRFLSKNY-EPGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred chHHHHHHHHHHHHhcc-CCcceEEEEecCccHHHHHHHHHH
Confidence 33567778888887765 456889999999999999888754
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.58 E-value=22 Score=34.94 Aligned_cols=89 Identities=7% Similarity=0.029 Sum_probs=58.4
Q ss_pred ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec
Q 005093 99 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 178 (715)
Q Consensus 99 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~ 178 (715)
++.++|||.+..|+..+-+ ..|.+++....+++..
T Consensus 16 IS~v~f~~~~~~LLvssWD--------------------------------------------gslrlYdv~~~~l~~~- 50 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWD--------------------------------------------GSLRLYDVPANSLKLK- 50 (323)
T ss_pred eeeEEEcCcCCcEEEEecc--------------------------------------------CcEEEEeccchhhhhh-
Confidence 4899999999988886422 4477777776665554
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC
Q 005093 179 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 258 (715)
Q Consensus 179 ~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 258 (715)
.....++....|.++.. +++.. .+..|-++|+ ++++..++-.
T Consensus 51 -~~~~~plL~c~F~d~~~-----~~~G~---------------~dg~vr~~Dl-----------------n~~~~~~igt 92 (323)
T KOG1036|consen 51 -FKHGAPLLDCAFADEST-----IVTGG---------------LDGQVRRYDL-----------------NTGNEDQIGT 92 (323)
T ss_pred -eecCCceeeeeccCCce-----EEEec---------------cCceEEEEEe-----------------cCCcceeecc
Confidence 34444666788887544 44332 3347889998 7777777766
Q ss_pred CCccccceeEcC
Q 005093 259 SISSAFFPRFSP 270 (715)
Q Consensus 259 ~~~~~~~~~~sp 270 (715)
+...+....+++
T Consensus 93 h~~~i~ci~~~~ 104 (323)
T KOG1036|consen 93 HDEGIRCIEYSY 104 (323)
T ss_pred CCCceEEEEeec
Confidence 655555555553
|
|
| >PLN00413 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=86.40 E-value=1.2 Score=46.99 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHh
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 579 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 579 (715)
...+...+..+.+.. ...+|.+.|||+||.+|..++.
T Consensus 267 yy~i~~~Lk~ll~~~--p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 267 YYTILRHLKEIFDQN--PTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHHHHC--CCCeEEEEecCHHHHHHHHHHH
Confidence 345666666666653 3568999999999999998774
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.15 E-value=4.3 Score=39.84 Aligned_cols=89 Identities=9% Similarity=0.169 Sum_probs=57.6
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccc-cc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTV-HG 91 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~ 91 (715)
...+.++|++....++.. -..++...+...+.+-+|..||-.+..+ .+..++ .+|...+... .+. +-
T Consensus 158 ~GqvQi~dL~~~~~~~p~----~I~AH~s~Iacv~Ln~~Gt~vATaStkG----TLIRIFdt~~g~~l~E~R--RG~d~A 227 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPS----IINAHDSDIACVALNLQGTLVATASTKG----TLIRIFDTEDGTLLQELR--RGVDRA 227 (346)
T ss_pred cceEEEEEhhhcCcCCce----EEEcccCceeEEEEcCCccEEEEeccCc----EEEEEEEcCCCcEeeeee--cCCchh
Confidence 356777777766553221 1334557789999999999999765544 666677 3444333332 221 11
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
.| ..++||||+++||.+++..+
T Consensus 228 ~i------y~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 228 DI------YCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred eE------EEEEeCCCccEEEEEcCCCe
Confidence 22 58999999999999887653
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=86.00 E-value=17 Score=36.83 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=62.7
Q ss_pred cccccceEEeeCCCCceEEEEecCCCCCCeEEEEe---cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEee
Q 005093 40 VEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 116 (715)
Q Consensus 40 ~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~ 116 (715)
.+++.++...|++ ...+|....+ +....| .++....++. ... +..+..+|..+.|+..+.
T Consensus 258 GHt~~Vs~V~w~d--~~v~yS~SwD----HTIk~WDletg~~~~~~~~-~ks----------l~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD--ATVIYSVSWD----HTIKVWDLETGGLKSTLTT-NKS----------LNCISYSPLSKLLASGSS 320 (423)
T ss_pred ccccceeeEEEcC--CCceEeeccc----ceEEEEEeecccceeeeec-Ccc----------eeEeecccccceeeecCC
Confidence 3567799999998 5577776655 444555 3443333332 222 368888998887776432
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc--eEeecCCCCCCccceEEEecC
Q 005093 117 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPL 194 (715)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~--~~~l~~~~~~~~~~~~~~spd 194 (715)
..+|.+||+.++. +...+-.....-+..+.|+|.
T Consensus 321 --------------------------------------------dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~ 356 (423)
T KOG0313|consen 321 --------------------------------------------DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT 356 (423)
T ss_pred --------------------------------------------CCceeecCCCCCCCceeEEeeecchhhhhheecCCC
Confidence 3678888887653 222210222335778999998
Q ss_pred CCCCccEEEEEe
Q 005093 195 NEGLHQYLVFVG 206 (715)
Q Consensus 195 g~~~~~~i~~~~ 206 (715)
... ++.++
T Consensus 357 ~~~----~~~S~ 364 (423)
T KOG0313|consen 357 NEF----QLVSG 364 (423)
T ss_pred Cce----EEEEE
Confidence 886 55554
|
|
| >PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria | Back alignment and domain information |
|---|
Probab=85.64 E-value=2.2 Score=39.09 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEE-ecCC
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA-ARNP 593 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v-~~~~ 593 (715)
..++.++++-|.... ....++.++|||||+.++..++...+..+..+| +.||
T Consensus 91 a~~L~~f~~gl~a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSP 143 (177)
T PF06259_consen 91 APRLARFLDGLRATH-GPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSP 143 (177)
T ss_pred HHHHHHHHHHhhhhc-CCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCC
Confidence 345555666555543 356789999999999999888776444444443 4444
|
Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=85.53 E-value=47 Score=34.19 Aligned_cols=184 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCcc-EEEEecCccccccccCCCcccceeecCC---CCeEEEEeec
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL-EKEFHVPQTVHGSVYADGWFEGISWNSD---ETLIAYVAEE 117 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~wSpD---g~~la~~~~~ 117 (715)
+......+|.||| +|++....+ .|+.+..+|.. ..+...+ .-...++..+.+++++|+ ..+|+.....
T Consensus 1 L~~P~~~a~~pdG-~l~v~e~~G----~i~~~~~~g~~~~~v~~~~---~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 1 LNNPRSMAFLPDG-RLLVAERSG----RIWVVDKDGSLKTPVADLP---EVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp ESSEEEEEEETTS-CEEEEETTT----EEEEEETTTEECEEEEE-T---TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CCCceEEEEeCCC-cEEEEeCCc----eEEEEeCCCcCcceecccc---cccccccCCcccceeccccCCCCEEEEEEEc
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC------ceEeecCCCC----CCccc
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG------EVQAVKGIPK----SLSVG 187 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g------~~~~l~~~~~----~~~~~ 187 (715)
. ..........|..+.++.+ ....+...+. .....
T Consensus 73 ~-----------------------------------~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~ 117 (331)
T PF07995_consen 73 A-----------------------------------DEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGG 117 (331)
T ss_dssp E------------------------------------TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EE
T ss_pred c-----------------------------------cCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCc
Q ss_pred eEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-------------Cce
Q 005093 188 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-------------PVV 254 (715)
Q Consensus 188 ~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 254 (715)
.+.|.||| . |+++.-........... ......|.+++. .+. ..+
T Consensus 118 ~l~fgpDG-~----LYvs~G~~~~~~~~~~~-~~~~G~ilri~~-----------------dG~~p~dnP~~~~~~~~~~ 174 (331)
T PF07995_consen 118 GLAFGPDG-K----LYVSVGDGGNDDNAQDP-NSLRGKILRIDP-----------------DGSIPADNPFVGDDGADSE 174 (331)
T ss_dssp EEEE-TTS-E----EEEEEB-TTTGGGGCST-TSSTTEEEEEET-----------------TSSB-TTSTTTTSTTSTTT
T ss_pred cccCCCCC-c----EEEEeCCCCCccccccc-ccccceEEEecc-----------------cCcCCCCCccccCCCceEE
Q ss_pred ecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEee
Q 005093 255 NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 298 (715)
Q Consensus 255 ~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~ 298 (715)
.....-......+|.|....|+...+.. .....|.++
T Consensus 175 i~A~GlRN~~~~~~d~~tg~l~~~d~G~-------~~~dein~i 211 (331)
T PF07995_consen 175 IYAYGLRNPFGLAFDPNTGRLWAADNGP-------DGWDEINRI 211 (331)
T ss_dssp EEEE--SEEEEEEEETTTTEEEEEEE-S-------SSSEEEEEE
T ss_pred EEEeCCCccccEEEECCCCcEEEEccCC-------CCCcEEEEe
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids [] | Back alignment and domain information |
|---|
Probab=85.34 E-value=1.5 Score=40.48 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhh--C----CCceeEEEecCC
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ--A----PDKFVAAAARNP 593 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~--~----p~~~~~~v~~~~ 593 (715)
..++.+.|+...++ ....+|+|+|+|.|+.++..++.. . .+++.+++++.-
T Consensus 64 ~~~~~~~i~~~~~~--CP~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGd 120 (179)
T PF01083_consen 64 VANLVRLIEEYAAR--CPNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGD 120 (179)
T ss_dssp HHHHHHHHHHHHHH--STTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-
T ss_pred HHHHHHHHHHHHHh--CCCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEEecC
Confidence 34455555544444 345799999999999999998876 2 236777776543
|
Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A .... |
| >COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.32 E-value=1.4 Score=44.18 Aligned_cols=147 Identities=20% Similarity=0.182 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHc-CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecC-Ccchhh----hhccCCCCCCcee-ee
Q 005093 541 VNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLA----LMVGTTDIPDWCY-VE 613 (715)
Q Consensus 541 ~~d~~~~i~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~-~~~~~~----~~~~~~~~~~~~~-~~ 613 (715)
+..+..|++-...+ ..+..+...+.|.|--|..+...|...|. +.++|... -..+.. .++... ...|.. ..
T Consensus 214 v~a~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDpr-v~aIvp~v~D~Lni~a~L~hiyrsY-Ggnwpi~l~ 291 (507)
T COG4287 214 VYAVSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPR-VFAIVPFVYDNLNIEAQLLHIYRSY-GGNWPIKLA 291 (507)
T ss_pred HHHHHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcc-hhhhhhhHHhhcccHHHHHHHHHhh-CCCCCcccc
Confidence 34444555544332 22556789999999999999888876664 44444221 122211 111000 011110 00
Q ss_pred ccCCCCCCCCCCCCChhhHHHHHhcCchhhc-----cCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC
Q 005093 614 SYGSKGKDSFTESPSVEDLTRFHSKSPISHI-----SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 688 (715)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-----~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (715)
.|..++.......| .......-.+|+.+. .++..|-+|+.+..|...+++.+.-+++.|.. ..-+...|+
T Consensus 292 pyyaegi~erl~tp--~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG---~kaLrmvPN 366 (507)
T COG4287 292 PYYAEGIDERLETP--LFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPG---EKALRMVPN 366 (507)
T ss_pred hhHhhhHHHhhcCH--HHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccCCC---ceeeeeCCC
Confidence 11111111111111 122223334666554 67889999999999999999999999988853 355889999
Q ss_pred CCccCC
Q 005093 689 DVHGIE 694 (715)
Q Consensus 689 ~~H~~~ 694 (715)
..|...
T Consensus 367 ~~H~~~ 372 (507)
T COG4287 367 DPHNLI 372 (507)
T ss_pred Ccchhh
Confidence 999764
|
|
| >PLN02162 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=85.28 E-value=1.4 Score=46.26 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHh
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 579 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 579 (715)
...+.+.++.+.++. ...++.+.|||+||.+|..+++
T Consensus 261 y~~I~~~L~~lL~k~--p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 261 YYTIRQMLRDKLARN--KNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHHHhC--CCceEEEEecChHHHHHHHHHH
Confidence 345555565555442 3468999999999999988754
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=84.79 E-value=50 Score=33.88 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=75.4
Q ss_pred EEeeCCCCceEEEEecCC---CCCCeEEEEecCCccEEEEecCccc----c--ccccCCCcccceeecCCCCeEEEEeec
Q 005093 47 AVVPSPSGSKLLVVRNPE---NESPIQFELWSQSQLEKEFHVPQTV----H--GSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 47 ~~~~Spdg~~la~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
..++.++|..+ +..+.+ +....|+.+...|+..+.+.++... + ...-.+..+.+++++|||+.|+.+.+.
T Consensus 89 gi~~~~~g~~~-is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 89 GIAVPPDGSFW-ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred HeEEecCCCEE-EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 34555666433 233321 0126788887557665544443322 0 223345577899999999988887665
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC-Cc-----eEeecCC---CCCCccce
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GE-----VQAVKGI---PKSLSVGQ 188 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-g~-----~~~l~~~---~~~~~~~~ 188 (715)
.-.... . ...........|+.+|..+ ++ ..++... .....+++
T Consensus 168 ~l~~d~----------~------------------~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd 219 (326)
T PF13449_consen 168 PLKQDG----------P------------------RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISD 219 (326)
T ss_pred cccCCC----------c------------------ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCcee
Confidence 411100 0 0000011225677777765 21 1122100 14567888
Q ss_pred EEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEec
Q 005093 189 VVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 231 (715)
Q Consensus 189 ~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 231 (715)
+.+-||++- ++.-...... ......||.+++
T Consensus 220 ~~al~d~~l----LvLER~~~~~--------~~~~~ri~~v~l 250 (326)
T PF13449_consen 220 IAALPDGRL----LVLERDFSPG--------TGNYKRIYRVDL 250 (326)
T ss_pred EEEECCCcE----EEEEccCCCC--------ccceEEEEEEEc
Confidence 999999986 6655421110 112347999997
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 715 | ||||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 1e-12 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 1e-12 | ||
| 2hu8_A | 582 | Binding Of Inhibitors By Acylaminoacyl Peptidase Le | 2e-12 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 4e-12 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 1e-11 | ||
| 3azo_A | 662 | Crystal Structure Of Puromycin Hydrolase Length = 6 | 1e-11 | ||
| 2qr5_A | 582 | Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mut | 1e-11 | ||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 1e-10 | ||
| 2z3w_A | 706 | Prolyl Tripeptidyl Aminopeptidase Mutant E636a Leng | 2e-09 | ||
| 2d5l_A | 706 | Crystal Structure Of Prolyl Tripeptidyl Aminopeptid | 2e-09 | ||
| 2dcm_A | 706 | The Crystal Structure Of S603a Mutated Prolyl Tripe | 4e-09 | ||
| 1z68_A | 719 | Crystal Structure Of Human Fibroblast Activation Pr | 5e-09 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 5e-09 | ||
| 1orv_A | 728 | Crystal Structure Of Porcine Dipeptidyl Peptidase I | 3e-08 | ||
| 1x70_A | 728 | Human Dipeptidyl Peptidase Iv In Complex With A Bet | 5e-08 | ||
| 1u8e_A | 728 | Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Leng | 5e-08 | ||
| 1n1m_A | 728 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 5e-08 | ||
| 2rgu_A | 734 | Crystal Structure Of Complex Of Human Dpp4 And Inhi | 5e-08 | ||
| 1r9n_A | 739 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 5e-08 | ||
| 4a5s_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A N | 5e-08 | ||
| 3q8w_A | 732 | A B-Aminoacyl Containing Thiazolidine Derivative An | 5e-08 | ||
| 2g5p_A | 726 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 5e-08 | ||
| 2rip_A | 729 | Structure Of Dppiv In Complex With An Inhibitor Len | 5e-08 | ||
| 3ccb_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A B | 5e-08 | ||
| 1j2e_A | 740 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 5e-08 | ||
| 1pfq_A | 731 | Crystal Structure Of Human Apo Dipeptidyl Peptidase | 5e-08 | ||
| 2onc_A | 731 | Crystal Structure Of Human Dpp-4 Length = 731 | 6e-08 | ||
| 1r9m_A | 733 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 6e-08 | ||
| 3nox_A | 753 | Crystal Structure Of Human Dpp-Iv In Complex With S | 6e-08 | ||
| 2qjr_A | 748 | Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf | 6e-08 | ||
| 2jid_A | 736 | Human Dipeptidyl Peptidase Iv In Complex With 1-(3, | 6e-08 | ||
| 2bgr_A | 738 | Crystal Structure Of Hiv-1 Tat Derived Nonapeptides | 6e-08 | ||
| 3qbj_A | 748 | Crystal Structure Of Dipeptidyl Peptidase Iv In Com | 6e-08 | ||
| 2qt9_A | 766 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 6e-08 | ||
| 3azp_A | 662 | Crystal Structure Of Puromycin Hydrolase S511a Muta | 1e-07 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 5e-06 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 1e-04 |
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase Length = 662 | Back alignment and structure |
|
| >pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant Length = 582 | Back alignment and structure |
|
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Length = 706 | Back alignment and structure |
|
| >pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase From Porphyromonas Gingivalis Length = 706 | Back alignment and structure |
|
| >pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl Aminopeptidase Complexed With Substrate Length = 706 | Back alignment and structure |
|
| >pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein Alpha Length = 719 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv (Cd26) Length = 728 | Back alignment and structure |
|
| >pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino Acid Inhibitor Length = 728 | Back alignment and structure |
|
| >pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Length = 728 | Back alignment and structure |
|
| >pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN INHIBITOR Length = 728 | Back alignment and structure |
|
| >pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor Length = 734 | Back alignment and structure |
|
| >pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution Length = 739 | Back alignment and structure |
|
| >pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval Heterocyclic Dpp4 Inhibitor Length = 740 | Back alignment and structure |
|
| >pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv Complex Length = 732 | Back alignment and structure |
|
| >pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv) Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor 21ac Length = 726 | Back alignment and structure |
|
| >pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor Length = 729 | Back alignment and structure |
|
| >pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Benzimidazole Derivative Length = 740 | Back alignment and structure |
|
| >pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv Length = 740 | Back alignment and structure |
|
| >pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv / Cd26 Length = 731 | Back alignment and structure |
|
| >pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4 Length = 731 | Back alignment and structure |
|
| >pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1 Ang. Resolution. Length = 733 | Back alignment and structure |
|
| >pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With Sa-(+)-(6- (Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1, 2-A]pyrimidin- 2-Yl)(Morpholino)methanone Length = 753 | Back alignment and structure |
|
| >pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf Length = 748 | Back alignment and structure |
|
| >pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4- Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine Length = 736 | Back alignment and structure |
|
| >pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides Tat(1-9) Bound To The Active Site Of Dipeptidyl Peptidase Iv (Cd26) Length = 738 | Back alignment and structure |
|
| >pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex With Inhibitor Length = 748 | Back alignment and structure |
|
| >pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl Cyclohexylalanine Inhibitor Length = 766 | Back alignment and structure |
|
| >pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant Length = 662 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 715 | |||
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 7e-67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 3e-63 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 3e-35 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 8e-33 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 1e-28 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 7e-26 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 5e-21 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 2e-19 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 6e-19 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 9e-19 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 1e-18 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 2e-18 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 1e-17 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 2e-17 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 8e-17 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 9e-17 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 2e-16 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 2e-16 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 3e-16 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 4e-16 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 6e-16 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 1e-14 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 7e-14 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 9e-14 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 1e-12 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 1e-12 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 2e-12 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 6e-11 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 6e-11 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 8e-10 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 5e-09 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 8e-09 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 6e-08 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 8e-08 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 5e-07 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 3e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-04 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 5e-06 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 5e-06 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 6e-06 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 6e-06 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 8e-06 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 8e-06 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 2e-05 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 3e-05 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 1e-04 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 1e-04 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 2e-04 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 2e-04 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 2e-04 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 2e-04 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 3e-04 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 3e-04 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 3e-04 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 3e-04 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 5e-04 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 6e-04 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 6e-04 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 6e-04 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 7e-04 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 7e-04 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 8e-04 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 9e-04 |
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 230 bits (587), Expect = 7e-67
Identities = 105/681 (15%), Positives = 205/681 (30%), Gaps = 138/681 (20%)
Query: 47 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS 106
++ G KLLVV E L+ + K P
Sbjct: 26 SLQGVVDGDKLLVVGFSEGSVNAY--LYDGGETVKLNREPINSVL----------DPHYG 73
Query: 107 DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ--GDWEED-WGETYAGKRQPS 163
+I + +T ++ + K + + G +
Sbjct: 74 VGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDR 133
Query: 164 LFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 223
+ + ++ G ++ ++ P FV G+ +
Sbjct: 134 VALYALDGGGLR------------ELARLP-------GFGFVSDIRGDLIAGLGFFGGGR 174
Query: 224 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 283
+L+ + + L + S SP K L
Sbjct: 175 VSLFTSNL-----SSGGLRV------------FDSGEGSFSSASISPGMKVTAGLE---- 213
Query: 284 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 343
+ L +D + ++ D F ++I +L D
Sbjct: 214 -----TAREARLVTVDPRDGS-----------VEDLELPSKD-FSSYRPTAITWLGYLPD 256
Query: 344 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQ 403
G +++ G S V I GE + + + L ++ +S P+
Sbjct: 257 GRLAVVARREGRSAVFID-----GERVEAPQG----NHGRVVLWRGKLVTSHTSLSTPPR 307
Query: 404 VKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK-IPVKG-----VSANL 457
+ + L P R + + + V+ V +
Sbjct: 308 I---VSLPSGEP----LLEGGLP----------EDLRRSIAGSRLVWVESFDGSRVPTYV 350
Query: 458 TK--GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLI 515
+ A P P +V++HGGP + S+ A L++ G+ +++
Sbjct: 351 LESGRAPTPG----------------PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVM 394
Query: 516 VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 575
NYRGS G+GEE + G ++ DV A + GLA+ ++ ++G S+GG++T
Sbjct: 395 PNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTL 452
Query: 576 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES-YGSKGKDSFTESPSVEDLTR 634
+ P F A A + + M +D ++E G
Sbjct: 453 CALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTG-------------GSREI 499
Query: 635 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 694
S+SPI+H+ ++K P + R P+ L+ L +G + + P+ H I
Sbjct: 500 MRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAIN 559
Query: 695 RPQSDFESFLNIGLWFKKYCK 715
+ + L + +
Sbjct: 560 TMEDAVKILLPAVFFLATQRE 580
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 222 bits (566), Expect = 3e-63
Identities = 110/690 (15%), Positives = 223/690 (32%), Gaps = 111/690 (16%)
Query: 50 PSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVH---GSVYADGWFEGI---- 102
P+ +G LV R + +S L ++V V G +A
Sbjct: 43 PAEAGRATLVRRRADGAE--------ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94
Query: 103 --SWNSDETLIAYVAEEPSPSKPT--FSLGSTKGGSSDKDCNSWKGQGDW----EEDWGE 154
+ D+ L A+ + P + P + + GG D + E++
Sbjct: 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADP-VLLPERGEVWCMAEEFTG 153
Query: 155 TYAGKRQPSLFVININSGEVQAVKGIPKSLS-----VGQVVWAPLNEGLHQYLVFVGWSS 209
+ L + ++ + + V +P +G + V++ W
Sbjct: 154 EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DG--RQAVWLAWDH 209
Query: 210 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFS 269
P ++ + + + + + ++
Sbjct: 210 P----------RMPWEGTELKTARVTEDGRFADTRTLLGGPE---------EAIAQAEWA 250
Query: 270 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 329
PDG L+ + D + +LHR+D T + + E P
Sbjct: 251 PDGS-LIVAT-----D---RTGWWNLHRVDPATG----------AATQLCRREEEFAGPL 291
Query: 330 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD 389
P ++ + V+ ++ SGEL+ + ++ +L T+ G
Sbjct: 292 WTPGMRWFAP---LANGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATL-TVSGT 347
Query: 390 NIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK-I 448
+ V++SP +V +D + + + + +
Sbjct: 348 RAVGVAASPRTAYEV---VELDTVTGRARTIGARHTD----------PVDPAYYPEPQIR 394
Query: 449 PVKG-----VSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL 503
+ A++ P F + + P +V+ HGGP S + +
Sbjct: 395 TFTAPDGREIHAHIYP----PHSPDFTGPADELP----PYVVMAHGGPTSRVPAVLDLDV 446
Query: 504 AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 563
A+ +S G + VNY GS G+G + L G+ G DV D + + G A+ +++
Sbjct: 447 AYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLA 506
Query: 564 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSF 623
V GGS GG+ + D + P+ +L D+ S+ D
Sbjct: 507 VRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGT-HDF------ESRYLDFL 558
Query: 624 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 683
S E R+ ++P++ +V+ P + L G +D P ++ A+ GV
Sbjct: 559 IGSFE-EFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAY 617
Query: 684 IVFPNDVHGIERPQSDFESFLNIGLWFKKY 713
+ F + HG R ++ + + +
Sbjct: 618 LSFEGEGHGFRRKETMVRALEAELSLYAQV 647
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 3e-35
Identities = 43/248 (17%), Positives = 80/248 (32%), Gaps = 27/248 (10%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 537
P IV HG S + + GY+ + RG + ++ +G
Sbjct: 83 PAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTK 140
Query: 538 ----------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 587
D + A++ + + +++ V GGS GG LT + A
Sbjct: 141 GILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAA 200
Query: 588 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV 647
A L N + + + S+ + TE +++ L+ F ++ +V
Sbjct: 201 VADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYF---DIMNLADRV 257
Query: 648 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 707
K P + +G D P S L + ++ V+ H
Sbjct: 258 KVPVLMSIGLIDKVTPPSTVFAAYNHLE---TKKELKVYRYFGHEYIPAFQT-----EKL 309
Query: 708 LWFKKYCK 715
+FK+ K
Sbjct: 310 AFFKQILK 317
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 8e-33
Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 20/232 (8%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
P ++ +HG S S +G + + RG G+ +Q++
Sbjct: 29 PGVLFVHGWGGSQHHSLVR--AREAVGLGCICMTFDLRGHEGYASMRQSV----TRAQNL 82
Query: 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 601
+D+ A D + + + + VVG S+GG+L+ P+ LAL
Sbjct: 83 DDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSA-----------LLTRERPVEWLALRS 131
Query: 602 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 661
+ + S D ++ ++ K + + D+
Sbjct: 132 PALYKDAH-WDQPKVSLNADPDLMDYR-RRALAPGDNLALAACAQYKGDVLLVEAENDVI 189
Query: 662 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713
VP YA A V H + + E + W +
Sbjct: 190 VPHPVMRNYADAFT-NARSLTSRVIAGADHALSVKEHQQEYTRALIDWLTEM 240
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 23/234 (9%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 537
P ++ HG + + + + G++++ ++ RG G ++ +
Sbjct: 109 PALIRFHGYSSNSGDWNDKLNYV---AAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHII 165
Query: 538 ------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF 585
D V++M + +V V+G S GG L+ P
Sbjct: 166 RGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVR 225
Query: 586 VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 645
+ L + + + + + D E + E T+ +
Sbjct: 226 KVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHEREN-EVFTKLGYIDVKNLAK 284
Query: 646 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 699
++K + +G D P S +A A + + V+P+ H R D
Sbjct: 285 RIKGDVLMCVGLMDQVCPPS--TVFA-AYNNIQSKKDIKVYPDYGHEPMRGFGD 335
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 7e-26
Identities = 35/241 (14%), Positives = 71/241 (29%), Gaps = 32/241 (13%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-------------------- 521
P +V G + F S+GY +++ RG
Sbjct: 96 PCVVQYIGYNGG---RGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQ 152
Query: 522 -LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 580
GF + + D + A++ + ++ + GGS GG + +
Sbjct: 153 YPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSAL 212
Query: 581 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 640
+ LC+ V D + + ++ +D
Sbjct: 213 SKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRD-----KEEIVFRTLSYFDG 267
Query: 641 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 700
++ ++ K P +F +G D P S +A A ++ ++P + H
Sbjct: 268 VNFAARAKIPALFSVGLMDNICPPS--TVFA-AYNYYAGPKEIRIYPYNNHEGGGSFQAV 324
Query: 701 E 701
E
Sbjct: 325 E 325
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 95.6 bits (237), Expect = 5e-21
Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 17/223 (7%)
Query: 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538
P IV + G + + L+ G++++ + Y LP + +
Sbjct: 172 GPFPGIVDMFGTGGGLL----EYRASLLAGKGFAVMALAYYNYED--------LPKTMET 219
Query: 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
+ A+++++ V ++G S GG L + A + N+
Sbjct: 220 LHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANVG 279
Query: 599 LMV---GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL 655
+ G T P + + + + ++ +FL+
Sbjct: 280 GTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLV 339
Query: 656 GAQDLRVPVSNGLQYA-RALREKGVE-TKVIVFPNDVHGIERP 696
G D A + L+ G ++I +P H IE P
Sbjct: 340 GQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYIEPP 382
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 90.3 bits (223), Expect = 2e-19
Identities = 32/222 (14%), Positives = 70/222 (31%), Gaps = 17/222 (7%)
Query: 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539
P I+ + G + + L+ G++ L + Y LP + +
Sbjct: 157 PFPGIIDIFGIGGGLL----EYRASLLAGHGFATLALAYYNFED--------LPNNMDNI 204
Query: 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-- 597
+ A+ +++ + ++G S G + + + + +
Sbjct: 205 SLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISGNT 264
Query: 598 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSV-EDLTRFHSKSPISHISKVKTPTIFLLG 656
A+ + IP Y + + L + + I K + P + ++G
Sbjct: 265 AINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVG 324
Query: 657 AQDLRVPVS-NGLQYARALREKGVET-KVIVFPNDVHGIERP 696
D + L+ G E ++I +P H IE P
Sbjct: 325 QDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYIEPP 366
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 89.0 bits (220), Expect = 6e-19
Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 34/247 (13%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
++V+ GG S + Y++L+V+ G G+ Q L +V ++
Sbjct: 160 DTLIVVGGGDTSRE-DLFYMLGYSGWEHDYNVLMVDLPG---QGKNPNQGLHFEVDARAA 215
Query: 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL---- 597
I ++D A K+ + G S GG+ T + + A A P+ ++
Sbjct: 216 ------ISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEKDKR-IKAWIASTPIYDVAEVF 268
Query: 598 -ALMVGTTDIPDWCYVESYGSKGKDS-------------FTESPSVEDLTRFHSKSPISH 643
P + F + + + ++ I
Sbjct: 269 RISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVD 328
Query: 644 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 703
+K+ P++FL+GA + + +++G++ + F ++ Q +
Sbjct: 329 YNKIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVN---- 384
Query: 704 LNIGLWF 710
N L
Sbjct: 385 -NFRLMH 390
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 9e-19
Identities = 71/351 (20%), Positives = 130/351 (37%), Gaps = 58/351 (16%)
Query: 361 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 420
+++ G+ +TP L DG II + SP VP+ V KG+ +
Sbjct: 386 CIDIKGGKTKDLTPESGMHRTQLSP-DGSAIIDIFQSP-TVPRKVT---VTNIGKGSHTL 440
Query: 421 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCS 479
L +P + + + + P F + KK
Sbjct: 441 LEAKNPDTGYA------MPEIRTGTIMAADGQTPLY---YKLTMPLH--FDPA--KKY-- 485
Query: 480 CDPLIVVLHGGPHSVS-LSSYSKSL----AFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 534
P+IV ++GGPH+ ++ S+ +++ GY++ V+ RGS G Q +
Sbjct: 486 --PVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHR 543
Query: 535 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594
++G ++ D + +D + + ++ V G S+GGF+TT+L+ D F A P
Sbjct: 544 RLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGP- 602
Query: 595 CNLALMVGTTDIPDWCYVESYGSKGKDS-FTE----SPSVEDLTRFHSKSPISHISKVKT 649
+ DW Y + E +P E+ + + + + +K
Sbjct: 603 -----------VIDWNR---Y-----AIMYGERYFDAPQ-ENPEGYDAANLLKRAGDLKG 642
Query: 650 PTIFLL--GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 698
+L GA D V + L + A + V+P+ H + P
Sbjct: 643 R--LMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGPDR 691
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 1e-18
Identities = 47/242 (19%), Positives = 101/242 (41%), Gaps = 30/242 (12%)
Query: 482 PLIVVLHGGPHSVS-LSSYSKSLA--FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538
PL++ ++ GP S + + + A S+ + + RGS G++ + ++ ++G+
Sbjct: 503 PLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGT 562
Query: 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
+V D + A MG + ++ + G S+GG++T+ ++G F A P
Sbjct: 563 FEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP----- 617
Query: 599 LMVGTTDIPDW-----CYVESY-GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 652
+ W Y E Y G + ++L + + + +S K
Sbjct: 618 -------VSRWEYYDSVYTERYMGLPTPE--------DNLDHYRNSTVMSRAENFKQVEY 662
Query: 653 FLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711
L+ G D V Q ++AL + GV+ + + + ++ HGI + + ++ + K
Sbjct: 663 LLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIK 722
Query: 712 KY 713
+
Sbjct: 723 QC 724
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 2e-18
Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 28/221 (12%)
Query: 482 PLIVVLHGGPHSVS-LSSYSKSLA--FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538
PL++ ++GGP S S S ++ + S G + +V+ RG+ G++ L ++ K+G
Sbjct: 497 PLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGV 556
Query: 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
+V D +TA+ I+MG + ++ + G S+GG++++ + F A P
Sbjct: 557 YEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAP----- 611
Query: 599 LMVGTTDIPDWCYVESYGSKGKDSFTE----SPSVED-LTRFHSKSPISHISKVKTPTIF 653
+ W Y S +TE P+ +D L + + + ++ +
Sbjct: 612 -------VSSWEYYASV-------YTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYL 657
Query: 654 LL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693
L+ G D V N Q A+AL V+ + + + + HG+
Sbjct: 658 LIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL 698
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 1e-17
Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 27/219 (12%)
Query: 482 PLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
P++++ GG + S + + + G +++NY+ L V
Sbjct: 36 PIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQ---------LIVGDQSVYPWA 86
Query: 541 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 596
+ + I + + ++ + G S GG + G A +
Sbjct: 87 LQQLGATIDWITTQASAHHV-DCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLD--- 142
Query: 597 LALMVGTTDIPDWCYVESYG-SKGKDSFTESPSVEDLTRFHSK--SPISHISKVKTPTIF 653
+ Y F + + + ++ + ++ P
Sbjct: 143 -----HYQGQHAAI-ILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFV 196
Query: 654 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692
A D VP N L+Y +A+ + V T +F + +HG
Sbjct: 197 WQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIHG 235
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 2e-17
Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 32/216 (14%)
Query: 482 PLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
P I++ GG + +S + GY +L++NY + L Q+
Sbjct: 44 PAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYT--VMNKGTNYNFLS-----QN 96
Query: 541 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 596
+ +V + + + NP +V ++G S GG L
Sbjct: 97 LEEVQAVFSLIHQNHKEWQI-NPEQVFLLGCSAGGHLAAWYGNSEQIHRPKG-------- 147
Query: 597 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLG 656
+ L T D + +E+++ + + ++ PT
Sbjct: 148 VILCYPVTSFTFGWP--------SDLSHFNFEIENISEY---NISEKVTSSTPPTFIWHT 196
Query: 657 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692
A D VP+ N L+Y L + V + F + HG
Sbjct: 197 ADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHG 232
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 8e-17
Identities = 74/375 (19%), Positives = 142/375 (37%), Gaps = 64/375 (17%)
Query: 361 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 420
+V + G+ R++ A S S + + S+ P + +AN +
Sbjct: 410 AVPLQGGQPQRLSKAPGMHSASFAR-NASVYVDSWSNN-STPPQIE---LFRANGEKIAT 464
Query: 421 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGA-------QKPFEAIFVSSS 473
L + + ++ + PV+ + G KP F +
Sbjct: 465 LVEN-------DLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAG--FDPA- 514
Query: 474 HKKDCSCDPLIVVLHGGPHS--V----SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE 527
K+ P+ V ++GGP S V +L+ GY + ++ RG+ G +
Sbjct: 515 -KRY----PVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRD 569
Query: 528 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 587
+L GK G+ +V D L + + +P+++ V G S+GG++T L+ +A D +
Sbjct: 570 FGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYAC 629
Query: 588 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS-FTE----SPSVEDLTRFHSKSPIS 642
A P + DW Y DS +TE P+ + + ++
Sbjct: 630 GVAGAP------------VTDWGL---Y-----DSHYTERYMDLPA-RNDAGYREARVLT 668
Query: 643 HISKVKTPTIFLL--GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 700
HI +++P LL G D V +N AL+++G +++ +P HG+ +
Sbjct: 669 HIEGLRSP--LLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADALH 726
Query: 701 ESFLNIGLWFKKYCK 715
+ + + K
Sbjct: 727 R-YRVAEAFLGRCLK 740
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 9e-17
Identities = 32/222 (14%), Positives = 58/222 (26%), Gaps = 53/222 (23%)
Query: 482 PLIVVLHGGPHSVS----------LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS 531
PL+V LHG + + + +L + +
Sbjct: 175 PLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDR 234
Query: 532 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 591
+ + V+ I ++D + +++ + G S GG+ T I + P+ F AA
Sbjct: 235 ENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIP- 293
Query: 592 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT 651
+ G D+ I P
Sbjct: 294 --------ICGGGDVSKV-----------------------------ERIKD-----IPI 311
Query: 652 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693
D VPV N + L E G + + +
Sbjct: 312 WVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEK 353
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 2e-16
Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 23/214 (10%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
P +++L G + + + G + + G GE K + D
Sbjct: 153 PAVIMLGGLESTKE--ESFQMENLVLDRGMATATFDGPGQ---GE----MFEYKRIAGDY 203
Query: 542 NDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 600
+A+ D + + + V+G S GG P A + +L
Sbjct: 204 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPR-LAACISWGGFSDLDYW 262
Query: 601 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK-SPISHISKVKTPTIFLLGAQD 659
T + + + E H+ +S++ PT L G D
Sbjct: 263 DLETPLTKESWKYVSKVDTLE--------EARLHVHAALETRDVLSQIACPTYILHGVHD 314
Query: 660 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693
VP+S + + + ++V + H
Sbjct: 315 -EVPLSFVDTVLELVPAEHLN--LVVEKDGDHCC 345
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-16
Identities = 42/244 (17%), Positives = 93/244 (38%), Gaps = 32/244 (13%)
Query: 482 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538
PL++V+ G P S S++ S +SS G ++ + RGS G + L + ++G
Sbjct: 497 PLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGL 556
Query: 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPL 594
+ D + A+ ++ + ++V V G +GG+L+T+++ + F +A +P
Sbjct: 557 LEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSP- 615
Query: 595 CNLALMVGTTDIPDWCYVESYGSKGKDSFTE----SPSVEDLTRFHSKSPISHISKVKTP 650
I D+ S F+E D + +S ++
Sbjct: 616 -----------ITDFKLYASA-------FSERYLGLHG-LDNRAYEMTKVAHRVSALEEQ 656
Query: 651 TIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 709
++ D ++ + + L + ++P++ H + +I +
Sbjct: 657 QFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINF 716
Query: 710 FKKY 713
F +
Sbjct: 717 FVEC 720
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 3e-16
Identities = 32/222 (14%), Positives = 61/222 (27%), Gaps = 31/222 (13%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLGFGEEALQSLPGKVGS 538
L++ LHG S L + G+ LL + G + +
Sbjct: 25 ALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVY 82
Query: 539 QDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 597
+ V + + + GGS G F+ L+ + A
Sbjct: 83 RVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLA-------- 134
Query: 598 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLG 656
+G+ + + + P + P + L G
Sbjct: 135 --FIGSGFPMKL------------PQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHG 180
Query: 657 AQDLRVPVSNGLQYARALREKGVETKV--IVFPNDVHGIERP 696
++D VP++ + ALR E ++ V H +
Sbjct: 181 SRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTPL 222
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 4e-16
Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 33/243 (13%)
Query: 482 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
P I+++ GG + ++ + GY + Y L + +G
Sbjct: 51 PAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYT---------LLTDQQPLGLAP 101
Query: 541 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC- 595
V D+ A+ H + + +P ++T G S GG + + P
Sbjct: 102 VLDLGRAVNLLRQHAAEWHI-DPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAML 160
Query: 596 --NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIF 653
N ++ P + + T +P+ +L + H++ PT
Sbjct: 161 KPNNVVLG----YPVISPLLGFPKDDATLATWTPTPNEL------AADQHVNSDNQPTFI 210
Query: 654 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI-----ERPQSDFESFLNIGL 708
A D VP +N L YA AL + ++ VF + HG+ + + ++
Sbjct: 211 WTTADDPIVPATNTLAYATALATAKIPYELHVFKHGPHGLALANAQTAWKPDANQPHVAH 270
Query: 709 WFK 711
W
Sbjct: 271 WLT 273
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 6e-16
Identities = 31/245 (12%), Positives = 69/245 (28%), Gaps = 37/245 (15%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS---------LGFGEEALQSL 532
PL +++HG L+ +G + L + G +
Sbjct: 28 PLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKW----- 82
Query: 533 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 592
+ ++L +D+ + + + G S GG D A +
Sbjct: 83 --------LTNILAVVDYAKKLDFVTD--IYMAGHSQGGLSVMLAAAMERDIIKALIPLS 132
Query: 593 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP----SVEDLTRFHSKSPISHISKVK 648
P + + T ++ + D++ V + K
Sbjct: 133 PAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTI---RVEDFVDKYT 189
Query: 649 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 708
P + + G QD VP + +++ + K++ P D H + +
Sbjct: 190 KPVLIVHGDQDEAVPYEASVAFSKQYKNC----KLVTIPGDTHCYDHHLELVTE--AVKE 243
Query: 709 WFKKY 713
+ +
Sbjct: 244 FMLEQ 248
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 1e-14
Identities = 31/234 (13%), Positives = 68/234 (29%), Gaps = 22/234 (9%)
Query: 484 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 543
+V++ G S+ + L+ ++L V+ G + L ++D +
Sbjct: 195 VVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSV---GYSSKYPL-----TEDYSR 246
Query: 544 VLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 602
+ A ++ + + + +V ++G GG L +K A +
Sbjct: 247 LHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASP 306
Query: 603 TT--DIPDWCYVESYGSK-GKDSFTESPSVEDLTRF-HSKSPISHISKVKTPTIFLLGAQ 658
+P Y++ S+ GK + + K K P + +
Sbjct: 307 QKLQQMPKM-YLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEG 365
Query: 659 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712
D P S+ A + + +S W +
Sbjct: 366 DPVSPYSDNQMVAFFSTYG---KAKKISSKTITQGYE-----QSLDLAIKWLED 411
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 7e-14
Identities = 25/233 (10%), Positives = 67/233 (28%), Gaps = 38/233 (16%)
Query: 481 DPLIVVLHGG------PHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLP 533
++ +HGG + + ++ + + YR S P
Sbjct: 41 REAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLS-----------P 89
Query: 534 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--------F 585
+++ D ++ I ++ + + +VG S G ++ D
Sbjct: 90 EITNPRNLYDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQL 147
Query: 586 VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-- 643
+ + L+ G + + + Y D FT + + + +
Sbjct: 148 QMLGLLQIVKRVFLLDGIYSLKEL--LIEYPEY--DCFTRLAFPDGIQMYEEEPSRVMPY 203
Query: 644 ----ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692
+S+ + D + + L++ + K+ + +H
Sbjct: 204 VKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 256
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 9e-14
Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 28/200 (14%)
Query: 482 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
L V +HGG + SS+S S G+++ + +Y P S+
Sbjct: 64 GLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELC-----------PEVRISEI 112
Query: 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 600
+ A+ + + G S GG L ++ A + N+ +
Sbjct: 113 TQQISQAVTAAAKE---IDGPIVLAGHSAGGHLVARMLDPEVLP---EAVGARIRNVVPI 166
Query: 601 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 660
+D+ + D ++SP+ ++ +G +
Sbjct: 167 SPLSDLRPL----------LRTSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAER 216
Query: 661 RVPVSNGLQYARALREKGVE 680
+ + A V
Sbjct: 217 PAFLDQAIWLVEAWDADHVI 236
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 1e-12
Identities = 29/233 (12%), Positives = 60/233 (25%), Gaps = 24/233 (10%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 537
I++ G + + ++ +LS+ G+ + + +G S G +
Sbjct: 36 NTILIASG--FARRMDHFAGLAEYLSTNGFHVFRYDSLHHVG------LS-SGSIDEFTM 86
Query: 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-VAAAARNPLCN 596
+ N + T + + ++ S + +I F + A L +
Sbjct: 87 TTGKNSLCTVYHWLQT---KGTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRD 143
Query: 597 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSV--EDLTRFHS---KSPISHISKVKTPT 651
D E + V D H S + ++ P
Sbjct: 144 TLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPL 203
Query: 652 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFL 704
I D V +R K+ H + +F
Sbjct: 204 IAFTANNDDWVKQEEVYDMLAHIRTG--HCKLYSLLGSSHDLGENLVVLRNFY 254
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 1e-12
Identities = 40/235 (17%), Positives = 70/235 (29%), Gaps = 48/235 (20%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
+++ HG S S ++ +A L G + L+++ +
Sbjct: 36 GIVLFAHGSGSS-RYSPRNRYVAEVLQQAGLATLLIDLLTQEEEEIDLRTRHLRFDIGLL 94
Query: 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 600
+ ++ A D + KV G S GG + P+ A +R +LA
Sbjct: 95 ASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA-- 152
Query: 601 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 660
S + VK PT+ ++G DL
Sbjct: 153 ----------------------------------------PSALPHVKAPTLLIVGGYDL 172
Query: 661 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
V N AL + ++++ P H E P + WF Y +
Sbjct: 173 PVIAMN----EDALEQLQTSKRLVIIPRASHLFEEPGALTAVAQLASEWFMHYLR 223
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 2e-12
Identities = 44/235 (18%), Positives = 71/235 (30%), Gaps = 32/235 (13%)
Query: 482 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
PL V +HGG + +S + L GY + +++Y P Q
Sbjct: 83 PLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLC-----------PQVTLEQL 131
Query: 541 VNDVLTAIDHVIDMGLA-NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599
+ ++ + D S +T G G L ++ + A + L
Sbjct: 132 MTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQIL--MRPNVITAQRSKMVWALIF 189
Query: 600 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT-----PTIFL 654
+ G D+ + +ES K E S SP+ T +
Sbjct: 190 LCGVYDLRELSNLESVNPKNILGLNER-------NIESVSPMLWEYTDVTVWNSTKIYVV 242
Query: 655 LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH-----GIERPQSDFESFL 704
D + YA LR+KG + +F H SD FL
Sbjct: 243 AAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDHFDIIEETAIDDSDVSRFL 297
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A Length = 254 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 6e-11
Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 38/238 (15%)
Query: 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFG--EEALQSLPGKVGS 538
D +++L G S + + L L+ ++++ + RG +G + P
Sbjct: 23 DHAVLLLPGMLGS-GETDFGPQLKNLNKKLFTVVAWDPRG---YGHSRPPDRDFPADFFE 78
Query: 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAARNP 593
+D D + + + KV+++G S GG + P A A
Sbjct: 79 RDAKDAVDLMKA---LKFK---KVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVT 132
Query: 594 LCNLALMVGTTDIPDWC------YVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHI-- 644
+ + G D+ W Y G D F + D R P +I
Sbjct: 133 DEDSMIYEGIRDVSKWSERTRKPLEALY---GYDYFARTCEKWVDGIRQFKHLPDGNICR 189
Query: 645 ---SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERPQ 697
+V+ P + + G +D VP + + + KG + + P H +
Sbjct: 190 HLLPRVQCPALIVHGEKDPLVPRFHADFIHKHV--KGSR--LHLMPEGKHNLHLRFAD 243
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} Length = 275 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 6e-11
Identities = 36/257 (14%), Positives = 68/257 (26%), Gaps = 46/257 (17%)
Query: 482 PLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
+IV +HGG + S + + Y L+ ++YR L LP
Sbjct: 30 GVIVYIHGGGLMFGKANDLSPQYIDILTEHYDLIQLSYR---------L--LPEVSLDCI 78
Query: 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA------AARNPL 594
+ DV + D + + + G S G +L+ + V P
Sbjct: 79 IEDVYASFDAIQS--QYSNCPIFTFGRSSGAYLSLLIARDRDIDGVIDFYGYSRINTEPF 136
Query: 595 CNLALMVG--------------------TTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 634
D ++ ++G + ++ D T
Sbjct: 137 KTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTD 196
Query: 635 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG-I 693
+ K P D VPV + + + + + H
Sbjct: 197 -SKYNIAPDELKTLPPVFIAHCNGDYDVPV----EESEHIMNHVPHSTFERVNKNEHDFD 251
Query: 694 ERPQSDFESFLNIGLWF 710
RP + + + F
Sbjct: 252 RRPNDEAITIYRKVVDF 268
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 8e-10
Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 25/238 (10%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLG-FGEEALQSLPGKVG 537
+ ++ HG + + S + L + + ++ G S G F +
Sbjct: 47 DMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTV-------- 98
Query: 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 597
++ D +++V + + +VG + GG + + L G PD P L
Sbjct: 99 LNEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATL 156
Query: 598 ALMVGTTDIPDWCYVESY--GSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTPTIFL 654
+ Y + T + + ++ P +
Sbjct: 157 KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLP---IYEVSAQFTKPVCLI 213
Query: 655 LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712
G D V + +Y + + + + H + + +
Sbjct: 214 HGTDDTVVSPNASKKYDQIYQNS----TLHLIEGADHCFSDSYQK-NAVNLTTDFLQN 266
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} Length = 274 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-09
Identities = 33/241 (13%), Positives = 65/241 (26%), Gaps = 48/241 (19%)
Query: 482 PLIVVLHGGPHSV-SLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539
+V LHGG + S + L L S GY++L ++Y L +
Sbjct: 28 NYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYL--LAP--NT--KID-----H 76
Query: 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599
+ + + + + + G S GG+L L Q + L
Sbjct: 77 ILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQF------LVN 129
Query: 600 MVGTTDI-----PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 654
G TD+ P ++ +K + ++ V D + + F
Sbjct: 130 FYGYTDLEFIKEPRKLLKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFY 189
Query: 655 LGAQDLRVPVSN-----------------------GLQYARALREKGVETKVIVFPNDVH 691
++ +Y++ + E+ H
Sbjct: 190 GLPENGDWSAYALSDETLKTFPPCFSTASSSDEEVPFRYSKKIGRTIPESTFKAVYYLEH 249
Query: 692 G 692
Sbjct: 250 D 250
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} Length = 270 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 8e-09
Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 34/240 (14%)
Query: 484 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 540
++++HG S+ + LA + GY++ + +G G E + + D
Sbjct: 43 VLLVHGFTGTPHSM----RPLAEAYAKAGYTVCLPRLKGH-GTHYEDM----ERTTFHDW 93
Query: 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 600
V V + + V G S GG LT +L PD + A+
Sbjct: 94 VASVEEGYGWLKQRC----QTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIA 149
Query: 601 VGTTDIPDWC-YVESYGSKGKDSFTE--------SPSVEDLTRFHSKSPISHISKVKTPT 651
G T + Y++S GS K+ + + S+ L R +++ + + ++ P
Sbjct: 150 AGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTK-AKLDRIVCPA 208
Query: 652 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI----ERPQ--SDFESFLN 705
+ + +D VP N + + E ++ N H ++P F
Sbjct: 209 LIFVSDEDHVVPPGNADIIFQGISSTEKE--IVRLRNSYHVATLDYDQPMIIERSLEFFA 266
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 6e-08
Identities = 39/236 (16%), Positives = 70/236 (29%), Gaps = 28/236 (11%)
Query: 484 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQD 540
+V+LH + +A L GY + + + G + L K
Sbjct: 25 VVLLHAYTGSPNDM----NFMARALQRSGYGVYVPLFSGHGTVEPLDIL----TKGNPDI 76
Query: 541 -VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599
+ A+ H+ +KV V G S GG + P +P+
Sbjct: 77 WWAESSAAVAHMTAKY----AKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKH 132
Query: 600 MVGTTDIPDWCYVESYGSKGKDSFTE----SPSVEDLTRFHSKSPISHISKVKTPTIFLL 655
+ + Y+ K +S + + +F + + + ++ VK PT
Sbjct: 133 HLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQF-ATTVAADLNLVKQPTFIGQ 191
Query: 656 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI----ERPQ--SDFESFLN 705
QD V Q AL + + H I D +F+
Sbjct: 192 AGQDELVDGRLAYQLRDALI-NAARVDFHWYDDAKHVITVNSAHHALEEDVIAFMQ 246
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} Length = 241 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 8e-08
Identities = 39/222 (17%), Positives = 69/222 (31%), Gaps = 52/222 (23%)
Query: 482 PLIVVLH---GGPHSVSLSSYSKSLA-FLSSVGYSLLIVN--YRG----SLGFGEEALQS 531
P+++V+ G + + + L L+ GY + +R +
Sbjct: 33 PIVIVVQEIFG------VHEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKE 86
Query: 532 LPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 590
L KV V D+ G + ++ + G GG +T P + AA
Sbjct: 87 LVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ--LKAAV 143
Query: 591 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTP 650
+ YG + SP K P+ + P
Sbjct: 144 -------------------AW---YGKLVGEKSLNSP----------KHPVDIAVDLNAP 171
Query: 651 TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692
+ L GA+D +P +ALR +++V+P H
Sbjct: 172 VLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHA 213
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} Length = 245 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 32/251 (12%), Positives = 86/251 (34%), Gaps = 48/251 (19%)
Query: 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE---EALQSLPGKVG 537
++ +HG +L + + +L Y+ ++++ +G GE + ++
Sbjct: 16 PNTLLFVHGSG--CNLKIFGELEKYLE--DYNCILLDLKG---HGESKGQCPSTV----- 63
Query: 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAAR- 591
+++V I + + +T++G S GG + + + ++ AR
Sbjct: 64 YGYIDNVANFITNSEVT--KHQKNITLIGYSMGGAIVLGVALKKLPNVRKVVSLSGGARF 121
Query: 592 -------------NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 638
N L N L+ I + + + + KD + DL
Sbjct: 122 DKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEKYFETLEKDPDI---MINDLIACKLI 178
Query: 639 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERP 696
+ ++ + P ++ +L V + + +++ +F H +
Sbjct: 179 DLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVE----NSELKIFETGKHFLLVVNA 234
Query: 697 Q---SDFESFL 704
+ + ++F+
Sbjct: 235 KGVAEEIKNFI 245
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A Length = 259 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-06
Identities = 35/249 (14%), Positives = 65/249 (26%), Gaps = 61/249 (24%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVN-----YRGSLGFGEEALQSL---- 532
L+++ HGG + + L G S + ++ R S+ G E +
Sbjct: 57 RLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVGLDA 116
Query: 533 ------PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV 586
G + + D A+D + P G S G + + +
Sbjct: 117 FPRMWHEGGGTAAVIADWAAALDFI--EAEEGPRPTGWWGLSMGTMMGLPVTASDKR--I 172
Query: 587 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK 646
A G G + V +
Sbjct: 173 KVAL------------------------LGLMGVEGVNGEDLVRLAPQ------------ 196
Query: 647 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 706
V P +LL D V + +GL+ L + + V P + + +
Sbjct: 197 VTCPVRYLLQWDDELVSLQSGLELFGKL--GTKQKTLHVNPGKHSAVPTWEMFAGTV--- 251
Query: 707 GLWFKKYCK 715
+ + K
Sbjct: 252 -DYLDQRLK 259
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-06
Identities = 74/493 (15%), Positives = 147/493 (29%), Gaps = 174/493 (35%)
Query: 296 HRIDWPTNGNFSSLEKIVDVIPVVQCA---EGDC-----FP-GLYSSS----ILSNPWLS 342
H +D+ T + + D++ V + A DC P + S I+ +
Sbjct: 5 HHMDFETGEHQYQYK---DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 343 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 402
G L ++ + ++ V E+LRI N+ + L++ + + P
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFV--EEVLRI-----NYKF-LMS-------PIKTEQRQ-P 105
Query: 403 QVKYGYFVDKANKGTWSWLNVSSP--ISRCPEKVKSLLSSRQFSIMKI-PVKGVSANLTK 459
+ ++++ ++ ++ V + +SR + L RQ +++++ P K V +
Sbjct: 106 SMMTRMYIEQRDR-LYNDNQVFAKYNVSR-LQPYLKL---RQ-ALLELRPAKNVLIDGVL 159
Query: 460 GAQKPFEAIFVSSSHK--------------KDCSCDPLIV------VLHGGPHSVSLSSY 499
G+ K + A+ V S+K K+C+ ++ + P+ S S +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 500 SKSLA------------FLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVND-- 543
S ++ L S Y LL++ +V +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----------------------NVQNAK 257
Query: 544 ------------VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL-------IGQAPDK 584
+ T V D A + + + + P
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 585 F-VAAAARNPLCNLAL-MVGTT--DIPD-WCYVESYGSKGKDSFTESPSVEDLTRFHSKS 639
NP L ++ + D W + + ES S+ L
Sbjct: 318 LPREVLTTNPR---RLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLE------ 367
Query: 640 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 699
P + R + L VFP H I P
Sbjct: 368 ----------PA-------EYR-------KMFDRL---------SVFPPSAH-I--P--- 388
Query: 700 FESFLNIGLWFKK 712
L++ +WF
Sbjct: 389 -TILLSL-IWFDV 399
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 8e-04
Identities = 83/608 (13%), Positives = 155/608 (25%), Gaps = 221/608 (36%)
Query: 4 ISQPNLLANKRKKFMLSTVISKENENSV------------TFQWAPFPVEMTGASAVVPS 51
I + A + T++SK E V F +P E PS
Sbjct: 55 IMSKD--AVSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-----PS 106
Query: 52 PSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQ--------------------TVHG 91
+ R+ L++ +Q+ +++V + + G
Sbjct: 107 MMTRMYIEQRDR---------LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 92 -----------SVYADGWFE-----GISW------NSDETLIA------------YVAEE 117
V + I W NS ET++ + +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 118 PSPSKPTFSLGSTKGGSSD-------KDC-----NSWKGQGDWE---------------- 149
S + S + ++C N + W
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-AWNAFNLSCKILLTTRFKQ 276
Query: 150 ---------------EDWGETYAGKRQPSLF--VININSGEV--QAVKGIPKSLSVGQVV 190
+ T SL ++ ++ + + P+ LS+ +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI---I 333
Query: 191 WAPLNEGLH--QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 248
+ +GL V T I+ N L +E ++
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTI--IESSLN----------VLEPAEYRKM------F 375
Query: 249 EDLPV----VNLTESISSAFFPRFSPD--GKFLVFLSAKSSVDSGAHSATDSLHRIDW-- 300
+ L V ++ + S + + L S V+ +T S+ I
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 301 -PTNGNFSSLEK-IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 358
N +L + IVD + + + S L P+L D S I
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKT---------FDSDDLIPPYL-DQ--YFYSHI------ 477
Query: 359 IISVNVSSG-ELLRITPAES---------NFSW--SLLTLDGDNIIAVSSSPVDVPQVKY 406
G L I E +F + + D A S + Q+K+
Sbjct: 478 --------GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 407 --GYFVDKANKGTWSWL---------NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSA 455
Y D N + L + + LL + ++M + +
Sbjct: 530 YKPYICD--NDPKYERLVNAILDFLPKIEENLICSKY--TDLL---RIALMA-EDEAIFE 581
Query: 456 NLTKGAQK 463
K Q+
Sbjct: 582 EAHKQVQR 589
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} Length = 289 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 45/264 (17%), Positives = 101/264 (38%), Gaps = 70/264 (26%)
Query: 481 DPLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE-EALQSLPGKVGS 538
D +V+LHG GP + +++S+++ L GY +++++ G +G+ +++ + +
Sbjct: 36 DETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPG---WGKSDSVVNSGSRSDL 92
Query: 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
+ + +D + + +K+ ++G S GG + + P++ V L
Sbjct: 93 N-ARILKSVVDQ---LDI---AKIHLLGNSMGGHSSVAFTLKWPER-VGK--------LV 136
Query: 599 LM-VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS---------- 642
LM GT + + + + G K + P++E+L S ++
Sbjct: 137 LMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNN 196
Query: 643 ---------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 675
++++K T+ + G D VP+ GL+ +
Sbjct: 197 MLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGI- 255
Query: 676 EKGVETKVIVFPNDVHG--IERPQ 697
G E + +F + H E
Sbjct: 256 -AGSE--LHIFRDCGHWAQWEHAD 276
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 5e-06
Identities = 32/282 (11%), Positives = 76/282 (26%), Gaps = 38/282 (13%)
Query: 453 VSANLT--KGAQKPFEAIFV---SSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS 507
+ + + + + S K+ +P I ++ S + ++
Sbjct: 100 STFLVLKPEHLKGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMV--- 156
Query: 508 SVGYSLLIVNYRG------------SLGFGEEALQSLPGKVG----SQDVNDVLTAIDHV 551
GY + V+ + + + ++G + ++ +
Sbjct: 157 KEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWM 216
Query: 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 611
++ + G S G ++G A + LC PD
Sbjct: 217 KAQSYIRKDRIVISGFSLGTE-PMMVLGVLDKDIYAFVYNDFLCQTQERAVVMTKPDKEN 275
Query: 612 VESYGSKGKDSFTESPSVEDLTRFHSK-SPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 670
+ + + + + +P P IF G D + +Q
Sbjct: 276 RRPFPNSIRHLIPGYWRYFNFPDVVASLAP--------RPIIFTEGGLDRDFRL---VQS 324
Query: 671 ARALREKGVETKVIVFPNDVHGIERPQSDF-ESFLNIGLWFK 711
A A K + +P R + + L+ +F+
Sbjct: 325 AYAASGKPENAEFHHYPKFADKAVRKDVEHLDEGLDSKTYFE 366
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} Length = 270 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 6e-06
Identities = 43/265 (16%), Positives = 82/265 (30%), Gaps = 50/265 (18%)
Query: 474 HKKDCSCDPLIVVLHG------GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLG- 523
P + L G G ++ + +S+G + +Y G S G
Sbjct: 30 RAPAQDERPTCIWLGGYRSDMTGTKALEMD------DLAASLGVGAIRFDYSGHGASGGA 83
Query: 524 FGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 583
F + + S+ + + L +DH P K +VG S GG++ LI +
Sbjct: 84 FRDGTI--------SRWLEEALAVLDHF------KPEKAILVGSSMGGWIALRLIQELKA 129
Query: 584 KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH------- 636
+ + L+ D G + + E+ E+++ +
Sbjct: 130 ---RHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFT 186
Query: 637 --------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 688
+ ++ + P L G D VP + L+ L V + + +
Sbjct: 187 RALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPADDV--VLTLVRD 244
Query: 689 DVHGIERPQSDFESFLNIGLWFKKY 713
H + RPQ I +
Sbjct: 245 GDHRLSRPQDIDRMRNAIRAMIEPR 269
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A Length = 322 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 41/237 (17%), Positives = 85/237 (35%), Gaps = 59/237 (24%)
Query: 481 DPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLG----FGEEALQSLPG 534
I+ LHGG + + S++++ + +S + L+++YR L F A+
Sbjct: 80 GKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYR--LAPEHPFPA-AV----- 131
Query: 535 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAA 590
D + A ++D G P +++ G S GG L ++ A D+ +A
Sbjct: 132 -------EDGVAAYRWLLDQGFK-PQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIP 183
Query: 591 RNPLCNLAL-------------MVGTTDIPDWCYVESY-GSKGKDSFTESPSVEDLTRFH 636
+P ++ MV I + Y SP+ +L
Sbjct: 184 ISPWADMTCTNDSFKTRAEADPMVAPGGI-NK-MAARYLNGADAKHPYASPNFANLKGL- 240
Query: 637 SKSPISHISKVKTPTIFLLGAQD-LRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692
P P + +G + L + ++ + GV++ + ++ + +H
Sbjct: 241 ---P---------PLLIHVGRDEVLL---DDSIKLDAKAKADGVKSTLEIWDDMIHV 282
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 8e-06
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 482 PLIVVLHG--GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539
P IV+ S Y++++A G+ L + GE P V S
Sbjct: 97 PAIVIGGPFGAVKEQSSGLYAQTMA---ERGFVTLAFDPSY---TGE--SGGQPRNVASP 148
Query: 540 D--VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 597
D D A+D + + N ++ V+G G + + + A DK V A + + ++
Sbjct: 149 DINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAV--AVDKRVKAVVTSTMYDM 206
Query: 598 ALMV 601
++
Sbjct: 207 TRVM 210
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A Length = 247 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 8e-06
Identities = 47/250 (18%), Positives = 79/250 (31%), Gaps = 53/250 (21%)
Query: 484 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 540
+++LHG +S + + L FL S GY+ Y+G G E L G D
Sbjct: 19 VLLLHGFTGNSADV----RMLGRFLESKGYTCHAPIYKGH-GVPPEELV----HTGPDDW 69
Query: 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 600
DV+ + + + G K+ V G S GG + L P+ + M
Sbjct: 70 WQDVMNGYEFLKNKG---YEKIAVAGLSLGGVFSLKL-----------GYTVPIEGIVTM 115
Query: 601 VGTTDIPDW--------CYVESYGSK-GKDSFTESPSVEDLTRFHSKSPIS--------- 642
I Y Y + GK +E + K+ +
Sbjct: 116 CAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVR 175
Query: 643 -HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI----ERPQ 697
H+ + PT + D + + + + + + H I E+ Q
Sbjct: 176 DHLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQ--IKWYEQSGHVITLDQEKDQ 233
Query: 698 --SDFESFLN 705
D +FL
Sbjct: 234 LHEDIYAFLE 243
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} Length = 306 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
I + G ++ + SS + ++S G+ ++ ++ +L + ++ +
Sbjct: 97 GAIAISPG--YTGTQSSIAWLGERIASHGFVVIAIDTNTTLDQPDSR---------ARQL 145
Query: 542 N---DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 593
N D + + S++ V+G S GG T + AA P
Sbjct: 146 NAALDYMLTDASSAVRNRIDASRLAVMGHSMGGG-GTLRLASQRPDLKAAIPLTP 199
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A Length = 322 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 61/238 (25%)
Query: 481 DPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSL------ 532
I+ HGG + S S++ L+ +L ++YR L
Sbjct: 80 AAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYR------------LAPENPF 127
Query: 533 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAA 588
P V +D + A ++ + ++ + G S GG LTT + +A +
Sbjct: 128 PAAV-----DDCVAAYRALLKTAGS-ADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGL 181
Query: 589 AARNPLCNLAL------------MVGTTDIPDWCYVESY-GSKGKDSFTESPSVEDLTRF 635
+P +L L + D E Y G + + + SP DL+
Sbjct: 182 VMLSPFVDLTLSRWSNSNLADRDFLAEPDTLGEM-SELYVGGEDRKNPLISPVYADLSGL 240
Query: 636 HSKSPISHISKVKTPTIFLLGAQD-LRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692
P + +G+++ L S+ A GV ++ ++P+ H
Sbjct: 241 ----P---------EMLIHVGSEEALL---SDSTTLAERAGAAGVSVELKIWPDMPHV 282
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A Length = 291 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 46/256 (17%), Positives = 88/256 (34%), Gaps = 73/256 (28%)
Query: 481 DPLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539
D +V+LHG GP + S +++S+++A L+ + +L V+ G+G S Q
Sbjct: 36 DQTVVLLHGGGPGAASWTNFSRNIAVLAR-HFHVLAVDQ---PGYG----HSDKRAEHGQ 87
Query: 540 DVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
A+ + D +GL +V +VG + GG P + L
Sbjct: 88 FNRYAAMALKGLFDQLGL---GRVPLVGNALGGGTAVRFALDYPAR-AGR--------LV 135
Query: 599 LM--VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS--------- 642
LM G + + G K F+ +P+ E+L + K+ I+
Sbjct: 136 LMGPGGLSINLFA-PDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFA 194
Query: 643 ------------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQYAR 672
+ +++ P + + G +D P+ L +
Sbjct: 195 LASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDGALVALK 254
Query: 673 ALREKGVETKVIVFPN 688
+ + + VF
Sbjct: 255 TI--PRAQ--LHVFGQ 266
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* Length = 273 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
V++HG H S+ K L + G+ + ++ S G + + +
Sbjct: 5 KHFVLVHGACHGGW--SWYKLKPLLEAAGHKVTALDLAAS---GTDLRKIEELRTLYDYT 59
Query: 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595
++ ++ L+ KV +VG S GG + + P K AA
Sbjct: 60 LPLMELMES-----LSADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFM 108
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} Length = 377 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 13/147 (8%)
Query: 482 PLIVVLHG-------GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 534
+I HG P + +Y A+ +S GY ++ +Y G +
Sbjct: 75 GIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYLGLGDNELTLHPYVQA 134
Query: 535 KVGSQDVNDVLTAIDHVI-DMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAA 588
+ + D+L A + + K+ + G S GGF T + A
Sbjct: 135 ETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAV 194
Query: 589 AARNPLCNLALMVGTTDIPDWCYVESY 615
A + + + +Y
Sbjct: 195 APGSAPYGWEETMHFVMLEPGPRATAY 221
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A Length = 286 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 45/273 (16%), Positives = 83/273 (30%), Gaps = 73/273 (26%)
Query: 482 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
+++LHG GP + S+Y +++ GY +++ + G F + + + G +
Sbjct: 34 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPG---FNKSDAVVMDEQRGLVN 90
Query: 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 600
V +D + + + +VG + GG + + PD+ + L LM
Sbjct: 91 ARAVKGLMDA---LDI---DRAHLVGNAMGGATALNFALEYPDR-IGK--------LILM 135
Query: 601 --VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS----------- 642
G G K PS E L + + +S I+
Sbjct: 136 GPGGLGPSMFAPMPME-GIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAI 194
Query: 643 --------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 676
+ ++K T G D VP+ +GL+ +
Sbjct: 195 QRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-- 252
Query: 677 KGVETKVIVFPNDVHG--IERPQ---SDFESFL 704
+ VF E FL
Sbjct: 253 DDAR--LHVFSKCGAWAQWEHADEFNRLVIDFL 283
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} Length = 176 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 23/195 (11%), Positives = 52/195 (26%), Gaps = 54/195 (27%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
++ HG S + +LA +G++ ++ G
Sbjct: 5 GHCILAHGF-ESGPDALKVTALAEVAERLGWTHERPDFT---DLDARRDLGQLGD-VRGR 59
Query: 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 600
+ +L + V + G S G ++ + + + P L LM
Sbjct: 60 LQRLLEIARAATE-----KGPVVLAGSSLGSYIAAQV-----------SLQVPTRALFLM 103
Query: 601 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 660
V T + +++ P + D
Sbjct: 104 VPPTKMGPLPALDAAA--------------------------------VPISIVHAWHDE 131
Query: 661 RVPVSNGLQYARALR 675
+P ++ + +A+A
Sbjct: 132 LIPAADVIAWAQARS 146
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* Length = 264 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
V++HGG + K L S G+ + V+ + G +
Sbjct: 11 KHFVLVHGGCLG--AWIWYKLKPLLESAGHKVTAVDLSAA---GINPRRLDEIHTFRDYS 65
Query: 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAA 590
++ + + KV ++G S GG + P+K F++A
Sbjct: 66 EPLMEVMASIPPDE-----KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 114
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A Length = 282 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 44/261 (16%), Positives = 87/261 (33%), Gaps = 52/261 (19%)
Query: 482 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE-EALQSLPGKVGSQ 539
++++HG GP + +++ ++ LS Y ++ + G FG + ++ S
Sbjct: 26 QPVILIHGSGPGVSAYANWRLTIPALSK-FYRVIAPDMVG---FGFTDRPENYNYSKDSW 81
Query: 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-----VAAAARNPL 594
V+ ++ +D + + K +VG + GG L + ++ + AA
Sbjct: 82 -VDHIIGIMDA---LEI---EKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFD 134
Query: 595 CNLALMVGTTDIPDW-----------------------CYVESYGSKG-KDSFTE-SPSV 629
L P E+ G ++SF+ P
Sbjct: 135 VTEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEP 194
Query: 630 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 689
S I + T+ + G +D VP+S+ L+ + + + VF
Sbjct: 195 RQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELI--DRAQ--LHVFGRC 250
Query: 690 VHG--IERPQ---SDFESFLN 705
H IE+ F N
Sbjct: 251 GHWTQIEQTDRFNRLVVEFFN 271
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Length = 751 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP-------L 594
+D + A + +++ L PS++ G S GG L ++ PD F A A P +
Sbjct: 571 SDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTM 630
Query: 595 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 654
C+ ++ + T + +W G+ + S SP+ ++ + P I +
Sbjct: 631 CDPSIPLTTGEWEEW------GN--------PNEYKYYDYMLSYSPMDNVRAQEYPNIMV 676
Query: 655 LGA-QDLRVPVSNGLQYARALREK 677
D RV ++ LRE
Sbjct: 677 QCGLHDPRVAYWEPAKWVSKLREC 700
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} Length = 262 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 28/241 (11%), Positives = 62/241 (25%), Gaps = 62/241 (25%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 540
P +V++ G + + + L+ ++++ + RG G S + +
Sbjct: 24 PPVVLVGGAL--STRAGGAPLAERLAP-HFTVICYDRRG---RG----DSGDTPPYAVER 73
Query: 541 -VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599
+ D+ ID G V G S G L+ + A +
Sbjct: 74 EIEDLAAIIDAA---GG----AAFVFGMSSGAGLSLLAAASGLP--ITRLA---VFEPPY 121
Query: 600 MVGTTDIP----------------------DWCYVESYGS--------------KGKDSF 623
V + P + E G G ++
Sbjct: 122 AVDDSRPPVPPDYQTRLDALLAEGRRGDAVTYFMTEGVGVPPDLVAQMQQAPMWPGMEAV 181
Query: 624 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 683
+ + + P + + + PT+ + G + A +
Sbjct: 182 AHTLPYDHAVMGDNTIPTARFASISIPTLVMDGGASPAWIRHTAQELADTI--PNARYVT 239
Query: 684 I 684
+
Sbjct: 240 L 240
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 29/237 (12%), Positives = 59/237 (24%), Gaps = 62/237 (26%)
Query: 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGI 102
A+ SP G K+ +R E + + +W ++ +
Sbjct: 59 ENATMPRISPDGKKIAFMRANEEKKVSE--IWVADLETLS-SKKILEAKNI------RSL 109
Query: 103 SWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 162
WN D + V + D+D W + +
Sbjct: 110 EWNEDSRKLLIVGFKRRE---------------DEDFIFEDDVPAW--FDDLGFFDGEKT 152
Query: 163 SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 222
+ ++ + S EV + +W K+ + +
Sbjct: 153 TFWIFDTESEEVIE---EFEKPRFSSGIWHR------------------DKIVVNVPHRE 191
Query: 223 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 279
Y +Y E + E + E +S F DG+ ++
Sbjct: 192 IIPQYFKFWDIYIWEDGKEE------------KMFEKVS---FYAVDSDGERILLYG 233
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 470 VSSSHKKDCSCD---PLIVVLHG-GPHSVSLS-SYSKS-LAFLSSVGYSLLIVNYRGSLG 523
+ HKK D P L+G G ++S++ +YS S L F+ +G L + N RG
Sbjct: 452 MFIVHKKGIKLDGSHPAF--LYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGE 509
Query: 524 FGE---EALQSLPGKVGS-QDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 578
+GE + G + + Q+ +D A +++I G +P ++T+ GGS+GG L
Sbjct: 510 YGETWHKG-----GILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCA 564
Query: 579 GQAPDKFVAAAARNP 593
Q PD F A+
Sbjct: 565 NQRPDLFGCVIAQVG 579
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 6e-04
Identities = 34/282 (12%), Positives = 80/282 (28%), Gaps = 36/282 (12%)
Query: 453 VSANLT--KGAQKPFEAIFV---SSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS 507
+ + KP AI S +K+ + +P I + + + +
Sbjct: 105 STFLVLIPDNINKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFV--- 161
Query: 508 SVGYSLLIVNYRG------------SLGFGEEALQSLPGKVG----SQDVNDVLTAIDHV 551
GY + V+ + + + ++G + ++ +
Sbjct: 162 KEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWM 221
Query: 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 611
++ V G S G ++G A + LC +PD
Sbjct: 222 KTQKHIRKDRIVVSGFSLGTEPMM-VLGTLDTSIYAFVYNDFLCQTQERAEVMTMPDKNG 280
Query: 612 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 671
+ + + + D + + I + P I G D + + ++ A
Sbjct: 281 RRPFPN------SIRHLIPDFWKNFNFPDIVAALAPR-PIILTEGGLDRDLDL---VRKA 330
Query: 672 RALREKGVETKVIVFPNDVHGIERPQSDF-ESFLNIGLWFKK 712
A+ K+ + R ++ L+ +F+
Sbjct: 331 YAIVGTPDNVKIYHYKKFSDPDTRKNVEYLPEGLDRNEYFRM 372
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 6e-04
Identities = 33/305 (10%), Positives = 81/305 (26%), Gaps = 49/305 (16%)
Query: 102 ISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQ 161
+ D + + + K +++ + + +
Sbjct: 341 VRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN-LGNVFAMGVDRNGKFAVVANDR 399
Query: 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 221
+ +++ +G+ + + + + + +++ + G
Sbjct: 400 FEIMTVDLETGKPTVI-ERSREAMITDFTISDNS----RFIAYGFPLKHGETDGYVM--- 451
Query: 222 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281
+ +Y E + + T S + P F D K L +LS +
Sbjct: 452 -------QAIHVYDMEGRK------------IFAATTENSHDYAPAFDADSKNLYYLSYR 492
Query: 282 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341
S + +++ S E + + L S+ S
Sbjct: 493 S------LDPSPDRVVLNF-------SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 539
Query: 342 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV 401
D + +NV G+ I P ES+ + + G+ +P
Sbjct: 540 YDL--------NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 591
Query: 402 PQVKY 406
+KY
Sbjct: 592 VLLKY 596
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 Length = 210 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 6e-04
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 10/139 (7%)
Query: 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
+++LHG S +L L+ GY + ++ G G +E
Sbjct: 32 RFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGL-GHSKE-----AAAPAPIG 85
Query: 541 VNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599
+ + V+D + L V+ S G + + + P+C +
Sbjct: 86 ELAPGSFLAAVVDALEL---GPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI 142
Query: 600 MVGTTDIPDWCYVESYGSK 618
+ YG +
Sbjct: 143 NAANYASVKTPALIVYGDQ 161
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* Length = 236 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 36/176 (20%), Positives = 49/176 (27%), Gaps = 46/176 (26%)
Query: 525 GEEALQSLPGKVG-SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 583
E L V D+ AI + +N KV +VG S GG L + A
Sbjct: 80 QREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLV---ASK 135
Query: 584 KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH 643
+V A Y YG + + P
Sbjct: 136 GYVDRAV-------------------GY---YGVGLEKQLNKVP---------------- 157
Query: 644 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 699
+VK P +F +G QD VP Q +V + H R S
Sbjct: 158 --EVKHPALFHMGGQDHFVPAP-SRQLITEGFGANPLLQVHWYEEAGHSFARTGSS 210
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} Length = 315 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 26/137 (18%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 537
I+++HG ++ +++ L+ GY ++ V+ G F + S P
Sbjct: 47 RTILLMHGKN--FCAGTWERTIDVLADAGYRVIAVDQVG---FCK---SSKPAHYQYSFQ 98
Query: 538 --SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARN 592
+ + + +L + ++ +V+G S GG L T P + V
Sbjct: 99 QLAANTHALLERLGV---------ARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIG 149
Query: 593 PLCNLALMVGTTDIPDW 609
AL V + DW
Sbjct: 150 LEDWKALGVPWRSVDDW 166
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* Length = 267 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 8e-04
Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 15/133 (11%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
V++H H + K +A + S G+++ ++ S G Q+L S +
Sbjct: 13 KHFVLVHAAFHGAW--CWYKIVALMRSSGHNVTALDLGAS---GINPKQALQIPNFSDYL 67
Query: 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAARNPLCN 596
+ ++ + + K+ +VG + GG + + P+K F++ P +
Sbjct: 68 SPLMEFMASLPANE-----KIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNID 122
Query: 597 LALMVGTTDIPDW 609
+
Sbjct: 123 ATTVCTKAGSAVL 135
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... Length = 257 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 9e-04
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Query: 484 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 543
V++H H + K L ++G+ + ++ S G + Q +
Sbjct: 6 FVLIHTICHGAW--IWHKLKPLLEALGHKVTALDLAAS---GVDPRQIEEIGSFDEYSEP 60
Query: 544 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 588
+LT ++ + KV +VG S GG + +K AA
Sbjct: 61 LLTFLEALPPGE-----KVILVGESCGGLNIAIAADKYCEKIAAA 100
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 715 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.92 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.92 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.92 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.91 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.91 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.91 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.91 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.9 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.9 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.9 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.9 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.9 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.9 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.89 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.89 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.89 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.89 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.89 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.89 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.89 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.89 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.88 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.88 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.88 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.87 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.87 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.87 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.87 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.87 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.87 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.87 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.87 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.87 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.86 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.86 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.86 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.86 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.86 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.86 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.86 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.86 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.86 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.86 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.86 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.86 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.86 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.86 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.86 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.85 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.85 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.85 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.85 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.85 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.85 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.85 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.85 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.85 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.84 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.84 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.84 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.84 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.84 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.83 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.83 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.83 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.83 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.83 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.83 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.83 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.82 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.82 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.82 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.82 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.82 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.82 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.82 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.81 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.81 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.81 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.81 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.81 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.81 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.81 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.8 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.8 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.8 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.8 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.8 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.8 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.79 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.79 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.79 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.78 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.78 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.78 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.78 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.77 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.77 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.77 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.77 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.77 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.77 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.77 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.77 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.77 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.77 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.76 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.76 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.76 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.76 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.76 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.76 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.76 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.76 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.75 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.75 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.75 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.75 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.75 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.75 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.75 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.75 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.75 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.74 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.74 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.74 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.74 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.74 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.74 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.74 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.74 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.74 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.74 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.74 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.74 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.74 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.73 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.73 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.73 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.73 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.73 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.73 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.73 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.72 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.72 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.72 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.72 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.72 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.72 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.72 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.71 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.71 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.71 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.71 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.7 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.7 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.7 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.7 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.7 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.7 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.7 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.7 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.7 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.69 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.69 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.69 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.69 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.69 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.69 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.68 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.68 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.68 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.68 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.68 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.67 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.67 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.67 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.67 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.67 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.67 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.66 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.66 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.66 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.66 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.66 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.66 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.65 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.65 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.65 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.65 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.65 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.65 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.64 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.64 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.64 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.64 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.62 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.62 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.62 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.4 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.59 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.59 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.57 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.56 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.55 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.55 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.55 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.54 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.54 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.54 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.53 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.53 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.53 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.52 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.5 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.5 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.5 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.47 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.47 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.47 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.47 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.46 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.45 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.43 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.43 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.42 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.42 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.41 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.4 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.38 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.38 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.38 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.37 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.36 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.36 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.35 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.35 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.35 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.33 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.33 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.33 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.33 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.32 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.31 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.31 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.31 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 99.3 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.3 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 99.3 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.29 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.28 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.27 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.25 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.25 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.25 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.25 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.24 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.24 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.23 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.23 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.23 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.23 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.21 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.21 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.21 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.18 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.17 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.17 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.16 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.16 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.16 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 99.16 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.15 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.15 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.15 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.14 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 99.14 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.14 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.13 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 99.13 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.12 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.12 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.11 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.11 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.11 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.11 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.1 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.1 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.1 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.09 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.08 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 99.08 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.07 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.06 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.05 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.05 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 99.05 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.04 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.04 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 99.04 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.04 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.04 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.04 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.03 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.03 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.03 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.03 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.03 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.03 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 99.03 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.03 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.02 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.02 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.02 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.02 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 99.01 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.01 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 99.01 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.99 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.99 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.99 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.98 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.98 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.98 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.98 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.98 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.96 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.95 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.95 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.94 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.94 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.94 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.93 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.93 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.92 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.92 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.92 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.92 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.9 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.89 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.89 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.89 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.89 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.88 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.88 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.88 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.87 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.87 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.86 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.85 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.85 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.84 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.84 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.84 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.84 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.84 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.83 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.82 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.81 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.8 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.8 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.79 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.79 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.78 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.78 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.78 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.78 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.77 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.75 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.74 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.73 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.72 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.72 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.68 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.65 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.65 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.64 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 98.64 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.63 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.62 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.61 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.61 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.56 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.56 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.56 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.55 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.55 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.55 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.54 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.53 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.53 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.5 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.5 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.5 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.49 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 98.48 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.47 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.45 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.44 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.44 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.41 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 98.4 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.39 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.39 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.39 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.39 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.39 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.39 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.38 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.38 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.38 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.36 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.35 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.34 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.33 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.33 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.32 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.29 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.27 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.26 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.21 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.19 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.18 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.18 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.18 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.16 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.14 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.13 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.13 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.11 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.11 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.07 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.06 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.06 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.06 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.03 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.0 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.97 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.94 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.93 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.92 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.92 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.88 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.86 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.82 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.81 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.78 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.78 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.77 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.77 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.76 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.71 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.69 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.65 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.63 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.62 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.61 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.61 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.59 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.52 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.42 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 97.39 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.38 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.38 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.37 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.29 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.28 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.21 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.21 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.2 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.16 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.13 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.09 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.06 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.03 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.02 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 96.98 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.97 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.97 | |
| 1tib_A | 269 | Lipase; hydrolase(carboxylic esterase); 1.84A {The | 96.82 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-54 Score=498.18 Aligned_cols=588 Identities=15% Similarity=0.194 Sum_probs=413.5
Q ss_pred cceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCc----
Q 005093 13 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ---- 87 (715)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---- 87 (715)
.....+|++|+.++. ..+|+..+ +.+..|+|||||++|||+++. .+|.+. .+|+.++++....
T Consensus 89 ~~~~~~~~~d~~~~~--~~~l~~~~-----~~~~~~~~SPdG~~la~~~~~-----~i~~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQ--LITEERIP-----NNTQWVTWSPVGHKLAYVWNN-----DIYVKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp CEEEEEEEEETTTTE--ECCSSCCC-----TTEEEEEECSSTTCEEEEETT-----EEEEESSTTSCCEECCSCCBTTTE
T ss_pred ccceEEEEEECCCCc--EEEcccCC-----CcceeeEECCCCCEEEEEECC-----eEEEEECCCCceEEEcCCCCccce
Confidence 344788998887664 45555544 678999999999999999654 588777 6777777664211
Q ss_pred --cccccccCCC---cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCc
Q 005093 88 --TVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 162 (715)
Q Consensus 88 --~~~~~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 162 (715)
+..++||.++ ....+.|||||++|||.+.+... ...+......... ........+.|.+. |.. ....
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~-v~~~~~~~~~~~~---~~~~~~~~~~yp~~-G~~---~~~~ 228 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE-VPLIEYSFYSDES---LQYPKTVRVPYPKA-GAV---NPTV 228 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT-CCEEEEEECCSTT---CSSCEEEEEECCBT-TSC---CCEE
T ss_pred ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccC-CceEEEEeecCCC---CCCCcceeecCCCC-cCc---CCee
Confidence 1112222211 22468999999999998765432 1122111111000 00000112223222 221 1224
Q ss_pred eEEEEEccC---C---ceEeecCCC-----CCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEec
Q 005093 163 SLFVININS---G---EVQAVKGIP-----KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 231 (715)
Q Consensus 163 ~l~~~~~~~---g---~~~~l~~~~-----~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 231 (715)
.|+++|+++ + +.+.+. .+ ....+..++|||||+. +++..++.. ....|+++|+
T Consensus 229 ~l~v~d~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~wspdg~~----~~~~~~r~~-----------~~~~i~~~d~ 292 (740)
T 4a5s_A 229 KFFVVNTDSLSSVTNATSIQIT-APASMLIGDHYLCDVTWATQERI----SLQWLRRIQ-----------NYSVMDICDY 292 (740)
T ss_dssp EEEEEETTSCCSSSCCCEEEEC-CCHHHHTSCEEEEEEEEEETTEE----EEEEEESST-----------TEEEEEEEEE
T ss_pred EEEEEECCCCCCCCcceEEEec-CCccCCCCCeEEEEEEEeCCCeE----EEEEeCCCC-----------CEEEEEEEEC
Confidence 799999999 8 666663 11 3345678899999998 887765432 1236999997
Q ss_pred ccccchhhhhhhhccCCCCCC-------ceec--CCCCcc-----ccceeEcCCCCeEE-EEecCCCCCCCCccccceeE
Q 005093 232 SLYKSEASELELKESSSEDLP-------VVNL--TESISS-----AFFPRFSPDGKFLV-FLSAKSSVDSGAHSATDSLH 296 (715)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~-------~~~l--t~~~~~-----~~~~~~spdg~~l~-~~~~~~~~~~g~~~~~~~l~ 296 (715)
++++ ...+ ...... ...|.|||||+.|+ |.+.++ +..+||
T Consensus 293 -----------------~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~--------G~~~l~ 347 (740)
T 4a5s_A 293 -----------------DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE--------GYRHIC 347 (740)
T ss_dssp -----------------ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT--------SCEEEE
T ss_pred -----------------CCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCC--------CceEEE
Confidence 5665 2333 112222 34899999999998 666653 357899
Q ss_pred eeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee----CCeeEEEEEECCCCcEE-E
Q 005093 297 RIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW----GSSQVIISVNVSSGELL-R 371 (715)
Q Consensus 297 ~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~----~~~~~l~~~d~~tg~~~-~ 371 (715)
+++++++..++||.+..++..+ +.+|++.|+|++.. .+..+||+++++++..+ +
T Consensus 348 ~~~~~~~~~~~lT~g~~~v~~~---------------------~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~ 406 (740)
T 4a5s_A 348 YFQIDKKDCTFITKGTWEVIGI---------------------EALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTC 406 (740)
T ss_dssp EEETTCSSCEESCCSSSCEEEE---------------------EEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEE
T ss_pred EEECCCCceEecccCCEEEEEE---------------------EEEeCCEEEEEEecCCCCCceeEEEEEECCCCCccee
Confidence 9999998888888765443321 23457889998876 45689999999877665 6
Q ss_pred ecCC----CCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCcceeeeccCCCCCCCchhhhhhccccceeeee
Q 005093 372 ITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK 447 (715)
Q Consensus 372 l~~~----~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (715)
|+.. ...+....||++++.+++.++++. |+.+++.+..+++ ... +...|+.+...+....+...+
T Consensus 407 lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~---~~~-------~l~~n~~~~~~~~~~~~~~~~ 475 (740)
T 4a5s_A 407 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDK---GLR-------VLEDNSALDKMLQNVQMPSKK 475 (740)
T ss_dssp SSTTTSTTTBCBEEEEECTTSSEEEEEECSBS-SCEEEEEETTTTE---EEE-------EEECCHHHHHHHTTEECCEEE
T ss_pred eccccCCCCCceEEEEECCCCCEEEEEeCCCC-CCEEEEEECCCCc---EEE-------EeccChhhhhhhhhccCCccE
Confidence 7643 123455789999999999999887 8889998876443 110 113344333333322221111
Q ss_pred cccccccccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-Cccch-HHHHHHH-hCCcEEEEEcCCCCCCC
Q 005093 448 IPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYS-KSLAFLS-SVGYSLLIVNYRGSLGF 524 (715)
Q Consensus 448 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~~~~-~~~~~la-~~G~~vi~~d~rG~~~~ 524 (715)
..++ ..+|.++.++++.|+++++.+++|+||++|||++... ...|. .....++ ++||+|+++|+||++++
T Consensus 476 ------~~~~-~~dg~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~l~~~~G~~Vv~~D~rG~g~~ 548 (740)
T 4a5s_A 476 ------LDFI-ILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQ 548 (740)
T ss_dssp ------EEEE-EETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSS
T ss_pred ------EEEE-ccCCeEEEEEEEeCCCCCCCCCccEEEEECCCCcccccccccCcCHHHHHHhcCCeEEEEEcCCCCCcC
Confidence 1123 4578999999999998877889999999999887642 12222 2334555 59999999999999999
Q ss_pred chhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC
Q 005093 525 GEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 604 (715)
Q Consensus 525 g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~ 604 (715)
|..+.......++...++|+.+++++|.+++.+|++||+|+||||||++++.++.++|++|+++|+.+|+.++..+..
T Consensus 549 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-- 626 (740)
T 4a5s_A 549 GDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDS-- 626 (740)
T ss_dssp CHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBH--
T ss_pred ChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHHhhh--
Confidence 998888777888888899999999999988888999999999999999999999999999999999999987653211
Q ss_pred CCCCceeeeccCCCCCCCCCCCC-ChhhHHHHHhcCchhhccCCCC-cEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEE
Q 005093 605 DIPDWCYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKT-PTIFLLGAQDLRVPVSNGLQYARALREKGVETK 682 (715)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~-P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (715)
.+.+ .+++.+ .....+.+...+|+..+.++++ |+|++||+.|.+||+.++.+++++|++++++++
T Consensus 627 -----~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~ 693 (740)
T 4a5s_A 627 -----VYTE--------RYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQ 693 (740)
T ss_dssp -----HHHH--------HHHCCSSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCE
T ss_pred -----HHHH--------HHcCCCCccccHHHHHhCCHHHHHhcCCCCcEEEEEcCCCCccCHHHHHHHHHHHHHCCCCeE
Confidence 0001 111112 2345677888899999999986 999999999999999999999999999999999
Q ss_pred EEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 683 VIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 683 ~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
++++|+++|.+...+....+++.+.+||+++|+
T Consensus 694 ~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 726 (740)
T 4a5s_A 694 AMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726 (740)
T ss_dssp EEEETTCCTTCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcCCCCccHHHHHHHHHHHHHHHcC
Confidence 999999999986666677899999999999874
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-52 Score=474.85 Aligned_cols=571 Identities=19% Similarity=0.255 Sum_probs=410.8
Q ss_pred eEEEEEEEeecCCCCccccccCCCcc-----ccccceEEeeC--CCCce-EEEEecCCCCCCeEEEEe-c--C-CccEEE
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPV-----EMTGASAVVPS--PSGSK-LLVVRNPENESPIQFELW-S--Q-SQLEKE 82 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~S--pdg~~-la~~~~~~~~~~~~~~~~-~--~-~~~~~~ 82 (715)
...||.+ . .+....+||..+... +.+ ...+.|| |||++ |||.... ..++|.+. . + ++..++
T Consensus 48 ~~~l~~~--~-~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~SPDg~~~la~~~~~---~~~l~~~~~~~~g~~~~~~l 120 (662)
T 3azo_A 48 RATLVRR--R-ADGAEESALPAPWNVRNRVFEYS-GFPWAGVPRPAGGPLLVFTHFG---DQRLYAFEPDAPGGAVPRPL 120 (662)
T ss_dssp EEEEEEE--C-TTSCEEESSCTTCCBCCCGGGTC-CCCEEEECCSSSSCEEEEEBTT---TCCEEEECTTSTTCCCCEEC
T ss_pred cEEEEEE--C-CCCCcceeCCCCccccccccccC-CccceeeeecCCCeEEEEEECC---CCeEEEEcCCCCCCCCCEec
Confidence 5678874 2 234566776654211 001 1145565 99999 9998654 34688887 4 3 677666
Q ss_pred EecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCc
Q 005093 83 FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 162 (715)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 162 (715)
+......+. .....++|||||++|+|.+.+.... +. .....
T Consensus 121 ~~~~~~~~~-----~~~~~~~~spDg~~l~~~~~~~~~~-------------------------------~~---~~~~~ 161 (662)
T 3azo_A 121 TPVSAVGGG-----LRWADPVLLPERGEVWCMAEEFTGE-------------------------------GP---SDVRR 161 (662)
T ss_dssp SCCCCSTTC-----EEEEEEEEETTTTEEEEEEEEECSS-------------------------------ST---TCEEE
T ss_pred cCCccCCCC-----ccccCcEECCCCCEEEEEEecccCC-------------------------------CC---CCcee
Confidence 653211110 1226899999999999987642110 00 01347
Q ss_pred eEEEEEccC------CceEeecCC-CCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEeccccc
Q 005093 163 SLFVININS------GEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 235 (715)
Q Consensus 163 ~l~~~~~~~------g~~~~l~~~-~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 235 (715)
+|+++|+++ ++.+.+ + ........++|||||+. |+|.++.... ..+ ...+||++|+
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDG~~----la~~~~~~~~----~~~---~~~~i~~~d~---- 224 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVREL--SDDAHRFVTGPRLSPDGRQ----AVWLAWDHPR----MPW---EGTELKTARV---- 224 (662)
T ss_dssp EEEEEETTSTTTTCGGGSEES--SCSCSSEECCCEECTTSSE----EEEEEECTTC----CTT---TCEEEEEEEE----
T ss_pred EEEEEECCCCccccCCceeEE--EecCCCcccCceECCCCCE----EEEEECCCCC----CCC---CCcEEEEEEE----
Confidence 899999999 888888 5 44456678899999999 9998754321 000 2247999998
Q ss_pred chhhhhhhhccCCC-CC---CceecCCC-CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCccc
Q 005093 236 SEASELELKESSSE-DL---PVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 310 (715)
Q Consensus 236 ~~~~~~~~~~~~~~-~~---~~~~lt~~-~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~ 310 (715)
+ ++ +.++++.. ......|.|||||+ |+|.+..+ +..+||++|+.+++.+.++.
T Consensus 225 -------------~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~--------~~~~l~~~~~~~~~~~~l~~ 282 (662)
T 3azo_A 225 -------------TEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRT--------GWWNLHRVDPATGAATQLCR 282 (662)
T ss_dssp -------------CTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTT--------SSCEEEEECTTTCCEEESSC
T ss_pred -------------CCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCC--------CCeEEEEEECCCCceeeccc
Confidence 5 45 66677654 46688899999999 88888764 23579999987766655543
Q ss_pred ceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEE-eecCC
Q 005093 311 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL-TLDGD 389 (715)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~-s~~~~ 389 (715)
..... ..+ .|..+...+.|++|++ ++++... +..+||.+|+++++.++++.... ....+ +++++
T Consensus 283 ~~~~~----------~~p-~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~s~~~~ 347 (662)
T 3azo_A 283 REEEF----------AGP-LWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPESGELVDAAGPWT--EWAATLTVSGT 347 (662)
T ss_dssp CSSBS----------SCC-CCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETTTTEEEECCSSCC--EEEEEEEEETT
T ss_pred ccccc----------cCc-cccccCceEeEeCCCE-EEEEEEc-CccEEEEEECCCCcEEEecCCCC--eEEEEEecCCC
Confidence 22110 001 1322344566778887 6666666 88899999999999888876655 33455 88999
Q ss_pred EEEEEEeCCCCCCeEEEEeecccCCCcceeeeccCCCCCCCchhhhhhcccccee-eeecccccccccccCCCCceEEEE
Q 005093 390 NIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFS-IMKIPVKGVSANLTKGAQKPFEAI 468 (715)
Q Consensus 390 ~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~ 468 (715)
.+++++.+.+.|.+||++++.+++ ... ++..+. ..+....+. .. .+.+...+|..++++
T Consensus 348 ~~~~~~~~~~~~~~i~~~d~~~g~-~~~---------l~~~~~---~~~~~~~~~~~~-------~~~~~~~dg~~i~~~ 407 (662)
T 3azo_A 348 RAVGVAASPRTAYEVVELDTVTGR-ART---------IGARHT---DPVDPAYYPEPQ-------IRTFTAPDGREIHAH 407 (662)
T ss_dssp EEEEEEEETTEEEEEEEEETTTCC-EEE---------EESCCC---CSSCGGGSCCCE-------EEEEECTTSCEEEEE
T ss_pred EEEEEEcCCCCCCEEEEEECCCCc-eEE---------eecCCc---ccCCccccCcce-------EEEEEcCCCCEEEEE
Confidence 999999999999999999976553 111 111111 001111110 11 123455678999999
Q ss_pred EEecCCCC----CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhH
Q 005093 469 FVSSSHKK----DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 544 (715)
Q Consensus 469 l~~P~~~~----~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~ 544 (715)
++.|++.+ ..+++|+||++||++.......|...++.|+++||.|+++|+||++++|.++.......++..+++|+
T Consensus 408 ~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~~~~~~~~~~~~~~~~~d~ 487 (662)
T 3azo_A 408 IYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDC 487 (662)
T ss_dssp EECCCCSSEECCTTCCCCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEEEEECTTCSSSCHHHHHTTTTTTTTHHHHHH
T ss_pred EECCCCccccCCCCCCccEEEEECCCCCccCcccchHHHHHHHhCCCEEEEECCCCCCCccHHHHHhhccccccccHHHH
Confidence 99998754 45789999999999877655678888899999999999999999999999998776677777779999
Q ss_pred HHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc-CCCCCCceeeeccCCCCCCCC
Q 005093 545 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-TTDIPDWCYVESYGSKGKDSF 623 (715)
Q Consensus 545 ~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 623 (715)
.++++++++++.+|.++|+|+||||||++++.++.+ |++|+++|+.+|+.++..+.. ... .+ .......+
T Consensus 488 ~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~--~~------~~~~~~~~ 558 (662)
T 3azo_A 488 AAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGTH--DF------ESRYLDFL 558 (662)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHHHHTTCSC--GG------GTTHHHHH
T ss_pred HHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHHHhccccc--ch------hhHhHHHH
Confidence 999999999988899999999999999999998886 999999999999988765543 111 00 00000111
Q ss_pred CCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHH
Q 005093 624 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 703 (715)
Q Consensus 624 ~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 703 (715)
.+.. .+..+.+...+|+..+.++++|+|++||++|.+||+.++.+++++|+..|++++++++++++|.+...+...+++
T Consensus 559 ~~~~-~~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~ 637 (662)
T 3azo_A 559 IGSF-EEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKETMVRAL 637 (662)
T ss_dssp TCCT-TTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHTTSCCCEEEEEETTCCSSCCSHHHHHHHH
T ss_pred hCCC-ccchhHHHhhChHhHhccCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCCCCCChHHHHHHH
Confidence 1111 245567778899999999999999999999999999999999999999999999999999999987666677899
Q ss_pred HHHHHHHHHhcC
Q 005093 704 LNIGLWFKKYCK 715 (715)
Q Consensus 704 ~~i~~wl~~~l~ 715 (715)
+.+++||+++|+
T Consensus 638 ~~~~~fl~~~l~ 649 (662)
T 3azo_A 638 EAELSLYAQVFG 649 (662)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 999999999874
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-50 Score=459.36 Aligned_cols=576 Identities=14% Similarity=0.147 Sum_probs=402.4
Q ss_pred ceEEEEEEEeecCCCCcccccc-CCCccc-cccceEEeeCCCCceEEEEecCCC-CCCeEEEEe-cCCccEEEEecCccc
Q 005093 14 RKKFMLSTVISKENENSVTFQW-APFPVE-MTGASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTV 89 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~Spdg~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ 89 (715)
....||+++..++ +..+|+. ..+..+ ......++|||||++|||....++ +..+++.++ .+|+..+.+......
T Consensus 96 ~~~~l~~~~~~~~--~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~ 173 (710)
T 2xdw_A 96 NQRVLYVQDSLEG--EARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKF 173 (710)
T ss_dssp SSCEEEEESSTTS--CCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECS
T ss_pred eEEEEEEEcCCCC--CcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCccc
Confidence 4557888655433 3333322 122221 124678999999999999988652 223788777 677766543322122
Q ss_pred cccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEc
Q 005093 90 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 169 (715)
Q Consensus 90 ~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 169 (715)
..++|||||+.|+|.+........ . +.........+||++++
T Consensus 174 ----------~~~~wspDg~~l~~~~~~~~~~~~--------------~--------------~~~~~~~~~~~v~~~~l 215 (710)
T 2xdw_A 174 ----------SCMAWTHDGKGMFYNAYPQQDGKS--------------D--------------GTETSTNLHQKLYYHVL 215 (710)
T ss_dssp ----------CCEEECTTSSEEEEEECCCCSSCC--------------S--------------SSCCCCCCCCEEEEEET
T ss_pred ----------ceEEEEeCCCEEEEEEECCccccc--------------c--------------ccccccCCCCEEEEEEC
Confidence 689999999999998765421100 0 00000012378999999
Q ss_pred cCCceE--eecCCC-CCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhcc
Q 005093 170 NSGEVQ--AVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 246 (715)
Q Consensus 170 ~~g~~~--~l~~~~-~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 246 (715)
.+++.. .+.... .......+.|||||+. |++.+..... ...+||++|+
T Consensus 216 ~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~----l~~~~~~~~~----------~~~~l~~~d~--------------- 266 (710)
T 2xdw_A 216 GTDQSEDILCAEFPDEPKWMGGAELSDDGRY----VLLSIREGCD----------PVNRLWYCDL--------------- 266 (710)
T ss_dssp TSCGGGCEEEECCTTCTTCEEEEEECTTSCE----EEEEEECSSS----------SCCEEEEEEG---------------
T ss_pred CCCcccceEEeccCCCCeEEEEEEEcCCCCE----EEEEEEccCC----------CccEEEEEEC---------------
Confidence 887632 221111 1223457899999999 9998743211 1358999997
Q ss_pred CCCC------C--CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC---CCcccceeee
Q 005093 247 SSED------L--PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN---FSSLEKIVDV 315 (715)
Q Consensus 247 ~~~~------~--~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~---~~lt~~~~~~ 315 (715)
.+ + ..+.|+....... ..|+|||++|+|.++.. ....+|+++|+.+++. +.++....
T Consensus 267 --~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~-------~~~~~l~~~d~~~~~~~~~~~l~~~~~-- 334 (710)
T 2xdw_A 267 --QQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRH-------SPNYRLINIDFTDPEESKWKVLVPEHE-- 334 (710)
T ss_dssp --GGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTT-------CTTCEEEEEETTSCCGGGCEEEECCCS--
T ss_pred --cccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCC-------CCCCEEEEEeCCCCCcccceeccCCCC--
Confidence 43 3 4667776554433 46999999999998764 2356799999887542 22221110
Q ss_pred eeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc-EEEecCCCCCceeEEEeecCCEEEEE
Q 005093 316 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 316 ~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~~~~~l~~~ 394 (715)
.. .+..+.|+++ ..++++...++..+|+.+++.+|+ .+.+....+.+....++++++.+++.
T Consensus 335 --------~~--------~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 335 --------KD--------VLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp --------SC--------EEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred --------CC--------eEEEEEEEcC-CEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE
Confidence 00 1224567744 568888888888999999996666 56676554433334566788899999
Q ss_pred EeCCCCCCeEEEEeecccCCCcceeeeccCCCCCCCchhhhhhccccceeeeecccccccccccCCCCceEEEEEEecCC
Q 005093 395 SSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSH 474 (715)
Q Consensus 395 ~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~ 474 (715)
.++..+|.+||++++.+++...+. +... ++..++ ...+....+ .+.+.+|.+|+++++.|++
T Consensus 398 ~ss~~~P~~i~~~d~~tg~~~~~~-l~~~--~~~~~~--------~~~~~~~~~-------~~~~~dg~~i~~~~~~p~~ 459 (710)
T 2xdw_A 398 FTSFLSPGIIYHCDLTKEELEPRV-FREV--TVKGID--------ASDYQTVQI-------FYPSKDGTKIPMFIVHKKG 459 (710)
T ss_dssp EECSSCCCEEEEEETTSSSCCCEE-EEEC--CCTTCC--------GGGEEEEEE-------EEECTTSCEEEEEEEEETT
T ss_pred EeCCCCCCEEEEEECCCCccceEE-eeec--ccCCcC--------ccccEEEEE-------EEEcCCCCEEEEEEEecCC
Confidence 999999999999998765310111 1100 111111 111222222 4556689999999999997
Q ss_pred CCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHH
Q 005093 475 KKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 553 (715)
Q Consensus 475 ~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~ 553 (715)
....++.|+||++|||+.......|......|++ +||+|+++|+||++++|..|.......+....++|+.+++++|++
T Consensus 460 ~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 539 (710)
T 2xdw_A 460 IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539 (710)
T ss_dssp CCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCCCCCChHHHHhhhhhcCCchHHHHHHHHHHHHH
Confidence 7667789999999998877666667766667777 999999999999999999987765555566678999999999999
Q ss_pred cCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHH
Q 005093 554 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 633 (715)
Q Consensus 554 ~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (715)
++.+++++|+|+|+|+||++++.++.++|++|+++|+.+|+.++...........| ...++. ....+..+
T Consensus 540 ~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~--~~~~g~--------~~~~~~~~ 609 (710)
T 2xdw_A 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW--TTDYGC--------SDSKQHFE 609 (710)
T ss_dssp TTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGG--HHHHCC--------TTSHHHHH
T ss_pred cCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccCCChhH--HHhCCC--------CCCHHHHH
Confidence 98889999999999999999999999999999999999999887654332211111 111111 12234566
Q ss_pred HHHhcCchhhcc-----CCCC-cEEEEeeCCCCcCCchHHHHHHHHHHHc-------CCcEEEEEeCCCCccCCCCC-ch
Q 005093 634 RFHSKSPISHIS-----KVKT-PTIFLLGAQDLRVPVSNGLQYARALREK-------GVETKVIVFPNDVHGIERPQ-SD 699 (715)
Q Consensus 634 ~~~~~sp~~~~~-----~i~~-P~Lii~G~~D~~v~~~~~~~~~~~l~~~-------g~~~~~~~~~~~~H~~~~~~-~~ 699 (715)
.+...+|+.++. ++++ |+||+||++|.+||+.++.+++++|+.. +.++++++++++||++..+. ..
T Consensus 610 ~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 689 (710)
T 2xdw_A 610 WLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689 (710)
T ss_dssp HHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCEEEEEESSCCSSTTCCHHHH
T ss_pred HHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccccCCCcCEEEEEeCCCCcCCCCCHHHH
Confidence 777889999988 7886 9999999999999999999999999988 88999999999999987653 34
Q ss_pred HHHHHHHHHHHHHhcC
Q 005093 700 FESFLNIGLWFKKYCK 715 (715)
Q Consensus 700 ~~~~~~i~~wl~~~l~ 715 (715)
.+.+..+++||.++|+
T Consensus 690 ~~~~~~~~~fl~~~l~ 705 (710)
T 2xdw_A 690 IEEVSDMFAFIARCLN 705 (710)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 6788899999999874
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-51 Score=460.29 Aligned_cols=543 Identities=17% Similarity=0.206 Sum_probs=389.5
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecC-ccccccccCCCcccceeecCCCCeEEEEeec-CCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEE-PSPSK 122 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~-~~~~~ 122 (715)
+...++||||++|||++..+ +..++|.+ .+|+.++++... ..+ ..++|||| +|+|.+.. .....
T Consensus 24 ~~~~~~~~DG~~la~~s~~~-g~~~lw~~-~~g~~~~lt~~~~~~~----------~~~~~spd--~~l~~~~~~~g~~~ 89 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSE-GSVNAYLY-DGGETVKLNREPINSV----------LDPHYGVG--RVILVRDVSKGAEQ 89 (582)
T ss_dssp EEEEEEEETTTEEEEEEEET-TEEEEEEE-ETTEEEECCSSCCSEE----------CEECTTCS--EEEEEEECSTTSCC
T ss_pred hheeecCCCCCeEEEEEccC-CceeEEEE-cCCCcEeeeccccccc----------ccccCCCC--eEEEEeccCCCCcc
Confidence 67889999999999998755 55566665 666766666443 122 68999999 68887764 22111
Q ss_pred -CCccCCC--CCCCCCCcCCCCCCCCCcccCCcC-cccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCC
Q 005093 123 -PTFSLGS--TKGGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 123 -~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
..+.... .......... .......|.++.. ..+.......+.+||+++|+.+.++ .... ..++|||||+.
T Consensus 90 ~~l~~~~~~~~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~--~~~~--~~~~~spDG~~- 163 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA--RLPG--FGFVSDIRGDL- 163 (582)
T ss_dssp EEEEEEETTSTTCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE--EESS--CEEEEEEETTE-
T ss_pred eEEEEEeccCCCccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee--cCCC--ceEEECCCCCE-
Confidence 1111111 1111110000 0111234555521 2233334456779999999988883 2222 68899999999
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~ 278 (715)
|++.+...+ ....||++|+ ++++.++|+........|+|||||++|+ .
T Consensus 164 ---la~~~~~~~-----------~~~~i~~~d~-----------------~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~ 211 (582)
T 3o4h_A 164 ---IAGLGFFGG-----------GRVSLFTSNL-----------------SSGGLRVFDSGEGSFSSASISPGMKVTA-G 211 (582)
T ss_dssp ---EEEEEEEET-----------TEEEEEEEET-----------------TTCCCEEECCSSCEEEEEEECTTSCEEE-E
T ss_pred ---EEEEEEcCC-----------CCeEEEEEcC-----------------CCCCceEeecCCCccccceECCCCCEEE-E
Confidence 998874322 1136999997 7888899998888889999999999998 4
Q ss_pred ecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCc--------cccCCCEEEEE
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP--------WLSDGCTMLLS 350 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~dg~~l~~~ 350 (715)
+..+ +..+||++|+.+++.+ ++..... .+..+. |+||| .++++
T Consensus 212 ~~~~--------~~~~i~~~d~~~~~~~-~~~~~~~-------------------~~~~~~~~~~~~~~~spdg-~~~~~ 262 (582)
T 3o4h_A 212 LETA--------REARLVTVDPRDGSVE-DLELPSK-------------------DFSSYRPTAITWLGYLPDG-RLAVV 262 (582)
T ss_dssp EECS--------SCEEEEEECTTTCCEE-ECCCSCS-------------------HHHHHCCSEEEEEEECTTS-CEEEE
T ss_pred ccCC--------CeeEEEEEcCCCCcEE-EccCCCc-------------------ChhhhhhccccceeEcCCC-cEEEE
Confidence 4332 2357999999887665 3221100 112234 99999 68888
Q ss_pred eeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCcceeeeccCCCCCCC
Q 005093 351 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRC 430 (715)
Q Consensus 351 ~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (715)
...++...||.+ |+..+.. .+.+....++ ++.++++.++...|++++++++.+ + ..+ | .+
T Consensus 263 ~~~~g~~~l~~~----g~~~~~~--~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d~~~-~-~~~---------l-~~ 322 (582)
T 3o4h_A 263 ARREGRSAVFID----GERVEAP--QGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLPSGE-P-LLE---------G-GL 322 (582)
T ss_dssp EEETTEEEEEET----TEEECCC--SSEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCC-E-EEC---------C-CC
T ss_pred EEcCCcEEEEEE----CCeeccC--CCceEEEEec--CCEEEEEEcCCCCCCeEEEEcCCC-c-eEE---------E-ec
Confidence 888888888876 5555422 2323334566 456778888899999999988653 2 111 1 11
Q ss_pred chhhhhhccccceeeeecccccccccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCC
Q 005093 431 PEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG 510 (715)
Q Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G 510 (715)
++... .... .... +++...+|.+++++++.|++.. ++.|+||++||+++......|...++.|+++|
T Consensus 323 ~~~~~--~~~~--~~~~-------~~~~~~~g~~i~~~~~~p~~~~--~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G 389 (582)
T 3o4h_A 323 PEDLR--RSIA--GSRL-------VWVESFDGSRVPTYVLESGRAP--TPGPTVVLVHGGPFAEDSDSWDTFAASLAAAG 389 (582)
T ss_dssp CHHHH--HTEE--EEEE-------EEEECTTSCEEEEEEEEETTSC--SSEEEEEEECSSSSCCCCSSCCHHHHHHHHTT
T ss_pred CCccc--cccC--cceE-------EEEECCCCCEEEEEEEcCCCCC--CCCcEEEEECCCcccccccccCHHHHHHHhCC
Confidence 11100 0111 1111 2455668899999999998643 38899999999887766677888999999999
Q ss_pred cEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEe
Q 005093 511 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 590 (715)
Q Consensus 511 ~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 590 (715)
|.|+++|+||++++|.++.......++...++|+.++++++.+++.+| +|+|+|||+||++++.++.++|++++++|+
T Consensus 390 ~~v~~~d~rG~~~~G~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 467 (582)
T 3o4h_A 390 FHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVA 467 (582)
T ss_dssp CEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEE
T ss_pred CEEEEeccCCCCCCchhHHhhhhhhcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEE
Confidence 999999999999999998887777777788999999999999997666 999999999999999999999999999999
Q ss_pred cCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHH
Q 005093 591 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 670 (715)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~ 670 (715)
.+|+.++..+..........+... +.+ ...+.+...+|+..+.++++|+|++||++|.++|+.++.++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v~~~~~~~~ 535 (582)
T 3o4h_A 468 GASVVDWEEMYELSDAAFRNFIEQ--------LTG----GSREIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRL 535 (582)
T ss_dssp ESCCCCHHHHHHTCCHHHHHHHHH--------HTT----TCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCHHHHHHH
T ss_pred cCCccCHHHHhhcccchhHHHHHH--------HcC----cCHHHHHhcCHHHHHhcCCCCEEEEecCCCCCcCHHHHHHH
Confidence 999988765543322111000010 111 44567788899999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 671 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 671 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
+++++++|.+++++++++++|.+...+...++++.+++||+++|+
T Consensus 536 ~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~~l~ 580 (582)
T 3o4h_A 536 MGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQRE 580 (582)
T ss_dssp HHHHHHTTCCEEEEEETTCCSSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999988666777899999999999985
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=467.36 Aligned_cols=592 Identities=16% Similarity=0.179 Sum_probs=398.8
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcc----
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQT---- 88 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---- 88 (715)
+...||++|+.++.. .+|+... .....+..++|||||++|||+++. +++.++ .+++..+++.....
T Consensus 89 ~~~~i~~~d~~~~~~--~~l~~~~--~~~~~~~~~~~SPdG~~la~~~~~-----~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP--QSLDPPE--VSNAKLQYAGWGPKGQQLIFIFEN-----NIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp CCSEEEEEESSSCCC--EECCCTT--CCSCCCSBCCBCSSTTCEEEEETT-----EEEEESSSSSCCEEEECCCBTTTEE
T ss_pred ceeeEEEEECCCCce--EeccCCc--cccccccccEECCCCCEEEEEECC-----eEEEEECCCCceEEEecCCCCCceE
Confidence 347888888876543 4444332 111236789999999999999763 677777 67777777654211
Q ss_pred --ccccccCCC---cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCce
Q 005093 89 --VHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS 163 (715)
Q Consensus 89 --~~~~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 163 (715)
..+++|.++ ....++|||||++|+|.+..... ...+....... . .......+.|.++ |.. .....
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~-~~~~~~~~~~~-~----~~~~~~~~~~~~~-G~~---~~~~~ 229 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR-VPIMELPTYTG-S----IYPTVKPYHYPKA-GSE---NPSIS 229 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT-SCEEEECCCSS-S----SSCCCEEEECCBT-TSC---CCEEE
T ss_pred CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCc-cceEEeeccCC-c----CCCcceeccCCCC-CCC---CCeeE
Confidence 111122111 12579999999999998865422 11121111000 0 0011223334433 321 12358
Q ss_pred EEEEEccCCce-EeecCCCC------CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccc
Q 005093 164 LFVININSGEV-QAVKGIPK------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 236 (715)
Q Consensus 164 l~~~~~~~g~~-~~l~~~~~------~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 236 (715)
|++||+++++. +.++ .. ...+..+.|||||+. |++...... ....|+++|+
T Consensus 230 l~~~d~~~~~~~~~l~--~~~~~~~~~~~~~~~~~SpDg~~----l~~~~~~~~-----------~~~~i~~~d~----- 287 (723)
T 1xfd_A 230 LHVIGLNGPTHDLEMM--PPDDPRMREYYITMVKWATSTKV----AVTWLNRAQ-----------NVSILTLCDA----- 287 (723)
T ss_dssp EEEEESSSSCCCEECC--CCCCGGGSSEEEEEEEESSSSEE----EEEEEETTS-----------CEEEEEEEET-----
T ss_pred EEEEECCCCceeEEee--CCccCCCccceeEEEEEeCCCeE----EEEEEcCCC-----------CeEEEEEEeC-----
Confidence 99999999984 6663 22 335667999999997 766653321 2237999997
Q ss_pred hhhhhhhhccCCCCCCceecCCC--Cccc----cceeEcCCCCeEEEE-ecCCCCCCCCccccceeEeee-cCCCC---C
Q 005093 237 EASELELKESSSEDLPVVNLTES--ISSA----FFPRFSPDGKFLVFL-SAKSSVDSGAHSATDSLHRID-WPTNG---N 305 (715)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~lt~~--~~~~----~~~~~spdg~~l~~~-~~~~~~~~g~~~~~~~l~~~~-~~~~~---~ 305 (715)
.+++...+... .... ..+.|||||++|+|. +..+ +......+||++| ..++. .
T Consensus 288 ------------~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~----~~~~~~~~l~~~d~~~~~~~~~~ 351 (723)
T 1xfd_A 288 ------------TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ----GGRGKFYHITVSSSQPNSSNDNI 351 (723)
T ss_dssp ------------TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC----SSSSCEEEEEEECSSCCSSSCCC
T ss_pred ------------CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc----CCCcceeEEEEEeccCCCCccce
Confidence 67776655422 2222 489999999999998 4443 2222345799999 56665 5
Q ss_pred CCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeC--CeeEEEEEECCCC-cEEEecCC---CCCc
Q 005093 306 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVIISVNVSSG-ELLRITPA---ESNF 379 (715)
Q Consensus 306 ~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~--~~~~l~~~d~~tg-~~~~l~~~---~~~~ 379 (715)
+.++.+..++. ..+.|+|||+.|++.+..+ +..+||.+++.++ +.+.++.. ...+
T Consensus 352 ~~l~~~~~~~~-------------------~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 412 (723)
T 1xfd_A 352 QSITSGDWDVT-------------------KILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTY 412 (723)
T ss_dssp CBSCCSSSCEE-------------------EEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCC
T ss_pred eEeecCCeEEE-------------------eeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCe
Confidence 55653321111 1246999999999888765 6788999998765 45556542 2334
Q ss_pred eeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCcceeeeccCCCCCCCchhhhhhccccceeeeecccccccccccC
Q 005093 380 SWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTK 459 (715)
Q Consensus 380 ~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (715)
....|+++++.+++..++++.|..+++ +...+ .++.+ + +.++.+...+....+.. .+ .+.+..
T Consensus 413 ~~~~~spdg~~l~~~~~~~~~p~~~~~-~~~~~---~~~~~------~-~~~~~~~~~~~~~~~~~----~~--~~~~~~ 475 (723)
T 1xfd_A 413 FSASFSHSMDFFLLKCEGPGVPMVTVH-NTTDK---KKMFD------L-ETNEHVKKAINDRQMPK----VE--YRDIEI 475 (723)
T ss_dssp CEEEECTTSSEEEEECCSSSSCCEEEE-ETTTC---CEEEE------E-ECCHHHHHHHHTSCCCB----CC--BCCEEE
T ss_pred EEEEECCCCCEEEEEccCCCCCeEEEE-ECCCC---CEEEE------e-ccChhhhhhhhhccCCC----ce--EEEEEc
Confidence 557899999999999999999986654 43222 22111 1 12222222232222211 11 124455
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-Cc--cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~--~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
.+| ++.++++.|++++..+++|+||++||+++... .. .+......|+++||.|+++|+||++++|..+.......+
T Consensus 476 ~~g-~l~~~~~~P~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~ 554 (723)
T 1xfd_A 476 DDY-NLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRL 554 (723)
T ss_dssp TTE-EECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCT
T ss_pred CCc-eEEEEEEeCCCCCCCCccCEEEEEcCCCCccccCccccccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhcc
Confidence 677 99999999998767788999999999887632 22 233556678889999999999999988888766666666
Q ss_pred CccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC----CCceeEEEecCCcchhhhhccCCCCCCceee
Q 005093 537 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDWCYV 612 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~----p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 612 (715)
+...++|+.++++++.+++.+|.++|+|+||||||++++.++.++ |++++++|+.+|+.++..+. ..+.
T Consensus 555 ~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~-------~~~~ 627 (723)
T 1xfd_A 555 GLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYA-------SAFS 627 (723)
T ss_dssp TTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSB-------HHHH
T ss_pred CcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHHHHHHHhccccCCCeEEEEEEccCCcchHHhh-------hhcc
Confidence 667799999999999988778899999999999999999999999 99999999999987654220 0000
Q ss_pred eccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCC-CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 005093 613 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 691 (715)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 691 (715)
..+ .+.+ ....+.+...+|...+.+++ +|+|++||++|.++|+.++.++++++++++.+++++++++++|
T Consensus 628 ~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H 698 (723)
T 1xfd_A 628 ERY--------LGLH-GLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESH 698 (723)
T ss_dssp HHH--------HCCC-SSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEETTCCS
T ss_pred Hhh--------cCCc-cCChhHHHhcChhhHHhhcCCCCEEEEEeCCCCCcCHhHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 000 0000 01111234456667888999 7999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhcC
Q 005093 692 GIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
.+...+...++++.+++||+++|+
T Consensus 699 ~~~~~~~~~~~~~~i~~fl~~~l~ 722 (723)
T 1xfd_A 699 YFTSSSLKQHLYRSIINFFVECFR 722 (723)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred ccccCcchHHHHHHHHHHHHHHhc
Confidence 986666667899999999999875
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-49 Score=450.24 Aligned_cols=537 Identities=15% Similarity=0.144 Sum_probs=386.1
Q ss_pred cceEEeeCCCCceEEEEecCCC-CCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
.+..++|||||++|||..+.++ +...++.++ .+|+....+. .... +..++|| ||+.|+|.+......
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k---------~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVK---------FSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEE---------SCCCEEE-TTTEEEEEESSCCC-
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCce---------eccEEEe-CCCEEEEEEecCccc
Confidence 4677899999999999987653 235677777 6776544321 1110 1589999 999999987653210
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce--EeecCCCC--CCccceEEEecCCCC
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPK--SLSVGQVVWAPLNEG 197 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~--~~l~~~~~--~~~~~~~~~spdg~~ 197 (715)
+.........+||++++.++.. +.+..... ......+.|||||+.
T Consensus 199 -------------------------------~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~ 247 (693)
T 3iuj_A 199 -------------------------------SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF 247 (693)
T ss_dssp -------------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE
T ss_pred -------------------------------ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE
Confidence 0000001237899999987653 33421111 122457889999999
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC--CceecCCCCccccceeEcCCCCeE
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPDGKFL 275 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lt~~~~~~~~~~~spdg~~l 275 (715)
|+++..... ..++||++|+ +++ ..+.|+........+ |++||++|
T Consensus 248 ----l~~~~~~~~-----------~~~~i~~~d~-----------------~~~~~~~~~l~~~~~~~~~~-~~~~g~~l 294 (693)
T 3iuj_A 248 ----LLISAANST-----------SGNRLYVKDL-----------------SQENAPLLTVQGDLDADVSL-VDNKGSTL 294 (693)
T ss_dssp ----EEEEEESSS-----------SCCEEEEEET-----------------TSTTCCCEEEECSSSSCEEE-EEEETTEE
T ss_pred ----EEEEEccCC-----------CCcEEEEEEC-----------------CCCCCceEEEeCCCCceEEE-EeccCCEE
Confidence 988864322 2248999997 444 667787766555555 89999999
Q ss_pred EEEecCCCCCCCCccccceeEeeecCCCCC---CCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEee
Q 005093 276 VFLSAKSSVDSGAHSATDSLHRIDWPTNGN---FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 352 (715)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~---~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~ 352 (715)
+|.++.+ ....+|+++++.+++. +.++... . ... .|+++++.|++...
T Consensus 295 ~~~t~~~-------~~~~~l~~~d~~~~~~~~~~~l~~~~----------~----------~~~--~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 295 YLLTNRD-------APNRRLVTVDAANPGPAHWRDLIPER----------Q----------QVL--TVHSGSGYLFAEYM 345 (693)
T ss_dssp EEEECTT-------CTTCEEEEEETTSCCGGGCEEEECCC----------S----------SCE--EEEEETTEEEEEEE
T ss_pred EEEECCC-------CCCCEEEEEeCCCCCccccEEEecCC----------C----------CEE--EEEEECCEEEEEEE
Confidence 9999874 2356899999987654 2222111 0 111 68999999999999
Q ss_pred eCCeeEEEEEECCCCcEEEecCCC-CCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCcceeeeccCCCCCCCc
Q 005093 353 WGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 431 (715)
Q Consensus 353 ~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (715)
.++..+|+.++++++..+.+.... +.+....++++++.+++..+++.+|+.++.+++.+++ ...+ . ..+
T Consensus 346 ~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~-~~~l--~-------~~~ 415 (693)
T 3iuj_A 346 VDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA-ISLY--R-------ASA 415 (693)
T ss_dssp ETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC-EEEE--E-------CCC
T ss_pred ECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe-EEEE--E-------eCC
Confidence 899999999999888888776443 3222234456889999999999999999999987553 1111 1 111
Q ss_pred hhhhhhccccceeeeecccccccccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCc
Q 005093 432 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY 511 (715)
Q Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~ 511 (715)
.. +....+....+ .+.+.+|.+|+++++.|++....++.|+||++|||++......|......|+++||
T Consensus 416 ~~----~~~~~~~~~~~-------~~~~~dg~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~l~~~G~ 484 (693)
T 3iuj_A 416 AP----FKPEDYVSEQR-------FYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGG 484 (693)
T ss_dssp SS----CCGGGEEEEEE-------EEECTTSCEEEEEEEEESSCCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHHHTTC
T ss_pred CC----cChhhCeeEEE-------EEecCCCcEEEEEEEecCCCCCCCCccEEEEECCCCCcCCCCccCHHHHHHHHCCC
Confidence 00 11112222222 45566899999999999977667889999999999877666778887888999999
Q ss_pred EEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEec
Q 005093 512 SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 591 (715)
Q Consensus 512 ~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 591 (715)
+|+++|+||++++|..|............++|+.+++++|++++.+|+++|+|+|+|+||++++.++.++|++|+++|+.
T Consensus 485 ~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~ 564 (693)
T 3iuj_A 485 VYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPA 564 (693)
T ss_dssp EEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEE
T ss_pred EEEEEeCCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEec
Confidence 99999999999999999877666666667899999999999998899999999999999999999999999999999999
Q ss_pred CCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhh-HHHHHhcCchhhccC-CCCc-EEEEeeCCCCcCCchHHH
Q 005093 592 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHSKSPISHISK-VKTP-TIFLLGAQDLRVPVSNGL 668 (715)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sp~~~~~~-i~~P-~Lii~G~~D~~v~~~~~~ 668 (715)
+|+.++..+........| ...++. ...... .+.+...+|+.++.+ +++| +||+||++|.+||+.++.
T Consensus 565 ~~~~d~~~~~~~~~~~~~--~~~~g~--------p~~~~~~~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~~~~~~ 634 (693)
T 3iuj_A 565 VGVLDMLRYHTFTAGTGW--AYDYGT--------SADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSF 634 (693)
T ss_dssp SCCCCTTTGGGSGGGGGC--HHHHCC--------TTSCHHHHHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSCTHHHH
T ss_pred CCcchhhhhccCCCchhH--HHHcCC--------ccCHHHHHHHHHhcCHHHhhcccCCCCceeEEecCCCCCCChhHHH
Confidence 999987654321111011 111221 112233 556778899999999 8887 999999999999999999
Q ss_pred HHHHHHHHc---CCcEEEEEeCCCCccCCCC-CchHHHHHHHHHHHHHhcC
Q 005093 669 QYARALREK---GVETKVIVFPNDVHGIERP-QSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 669 ~~~~~l~~~---g~~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~wl~~~l~ 715 (715)
+++++|+.+ +.++++++++++||++..+ ....+.+..+.+||.++|+
T Consensus 635 ~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 685 (693)
T 3iuj_A 635 KFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMG 685 (693)
T ss_dssp HHHHHHHHHCCSSSCEEEEEEC-------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCCCEEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence 999999998 4799999999999998764 4556788899999999874
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-49 Score=452.98 Aligned_cols=582 Identities=18% Similarity=0.224 Sum_probs=399.7
Q ss_pred EEEEEEEeecCC-CCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcc-c---
Q 005093 16 KFMLSTVISKEN-ENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQT-V--- 89 (715)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~--- 89 (715)
..||++|+.++. ....+++... +.+..++|||||++|||+++. +++.++ .+++..+++..... .
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~SPDG~~la~~~~~-----~i~~~d~~~g~~~~~~~~~~~~~~~g 198 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGE-----GFATDAKLSPKGGFVSFIRGR-----NLWVIDLASGRQMQLTADGSTTIGNG 198 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSS-----SCEEEEEECTTSSEEEEEETT-----EEEEEETTTTEEEECCCCCCSSEEES
T ss_pred CcEEEEECCCCCcceEEEcccCC-----cccccccCCCCCCEEEEEeCC-----cEEEEecCCCCEEEeccCCccceecc
Confidence 478888887651 1234444433 568899999999999999753 677777 56666555432211 0
Q ss_pred -cccccCC--CcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEE
Q 005093 90 -HGSVYAD--GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV 166 (715)
Q Consensus 90 -~~~~~~~--~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (715)
..+++.+ .....++|||||++|+|.+.+..... .+.. ....+.. .....+.|... |. ......|++
T Consensus 199 ~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~-~~~~-----~~~~p~~-~~~~~~~~~~~-g~---~~~~~~l~~ 267 (741)
T 2ecf_A 199 IAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP-VQKR-----YEVYADR-TDVIEQRYPAA-GD---ANVQVKLGV 267 (741)
T ss_dssp CCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC-EEEE-----EEECSSC-EEEEEEECCBT-TS---CCCEEEEEE
T ss_pred ccceeeeeccccccceEECCCCCEEEEEEEcCCCCc-eEec-----CCCCCCc-ccceEeecCCC-CC---CCCeeEEEE
Confidence 0011000 01267999999999999876542211 0000 0000000 00001111111 11 012258999
Q ss_pred EEccC-CceEeecCC-CCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhh
Q 005093 167 ININS-GEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 244 (715)
Q Consensus 167 ~~~~~-g~~~~l~~~-~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (715)
+|+++ ++.+.+... .....+..++| |||+. |++....... ....|+++|+
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~----l~~~~~~~~~----------~~~~i~~~d~------------- 319 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQH----LSFQRQSRDQ----------KKLDLVEVTL------------- 319 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTE----EEEEEEETTS----------SEEEEEEEET-------------
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCE----EEEEEecccC----------CeEEEEEEEC-------------
Confidence 99999 988777311 23345678999 99999 9987642211 2247999997
Q ss_pred ccCCCCCCceecCCCCc-----cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 245 ESSSEDLPVVNLTESIS-----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 245 ~~~~~~~~~~~lt~~~~-----~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
.+++.+.+..... ....+.|||||+ +++.+..+ +..+||.+++.++ .+.++.....
T Consensus 320 ----~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~--------g~~~l~~~~~~~~-~~~l~~~~~~----- 380 (741)
T 2ecf_A 320 ----ASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERT--------GFQHLYRIDSKGK-AAALTHGNWS----- 380 (741)
T ss_dssp ----TTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTT--------SSCEEEEECSSSC-EEESCCSSSC-----
T ss_pred ----CCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCC--------CccEEEEEcCCCC-eeeeeecceE-----
Confidence 6777666654322 346899999999 66776553 2357999987665 5455433211
Q ss_pred ecCCCCCccccccCCCCCC-ccccCCCEEEEEeeeCC--eeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEe
Q 005093 320 QCAEGDCFPGLYSSSILSN-PWLSDGCTMLLSSIWGS--SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 396 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~-~~~~dg~~l~~~~~~~~--~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~ 396 (715)
+..+ .|+|||+.|++.+..++ ..+||.+++.++..++|+.... +....||+|++.+++..+
T Consensus 381 ---------------v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~-~~~~~~spdg~~l~~~~~ 444 (741)
T 2ecf_A 381 ---------------VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPG-MHSASFARNASVYVDSWS 444 (741)
T ss_dssp ---------------EEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCS-EEEEEECTTSSEEEEEEE
T ss_pred ---------------EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCC-ceEEEECCCCCEEEEEec
Confidence 1233 49999999988887655 6789999987777888877433 445689999999999999
Q ss_pred CCCCCCeEEEEeecccCCCcceeeeccCCCCCCCchhhhh-hcccc--ce-eeeecccccccccccCCCC-ceEEEEEEe
Q 005093 397 SPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKS-LLSSR--QF-SIMKIPVKGVSANLTKGAQ-KPFEAIFVS 471 (715)
Q Consensus 397 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~--~~-~~~~~~~~~~~~~~~~~~g-~~l~~~l~~ 471 (715)
+...|+++++.+..++. ... ++.....+.. .+... .+ .... +++...+| ..++++++.
T Consensus 445 ~~~~p~~~~l~~~~~~~-~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~l~~~~~~ 507 (741)
T 2ecf_A 445 NNSTPPQIELFRANGEK-IAT---------LVENDLADPKHPYARYREAQRPVEF-------GTLTAADGKTPLNYSVIK 507 (741)
T ss_dssp ETTEEEEEEEEETTSCE-EEC---------SSCCCSSSTTSTTHHHHTTCCCEEE-------EEEECTTSSCEEEEEEEC
T ss_pred CCCCCCeEEEEEcCCCe-EEE---------eccCcccccccchhhhhccCCCcEE-------EEEEcCCCCEEEEEEEEe
Confidence 99999999998865332 111 1111100000 01111 11 1111 24456688 899999999
Q ss_pred cCCCCCCCCCcEEEEEcCCCCCCC-Cccch-----HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHH
Q 005093 472 SSHKKDCSCDPLIVVLHGGPHSVS-LSSYS-----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 545 (715)
Q Consensus 472 P~~~~~~~~~P~vv~iHGg~~~~~-~~~~~-----~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~ 545 (715)
|++++..+++|+||++||++.... ...|. ..++.|+++||.|+++|+||.++++..+.......++...++|+.
T Consensus 508 P~~~~~~~~~p~vv~~hG~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~d~~ 587 (741)
T 2ecf_A 508 PAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQL 587 (741)
T ss_dssp CSSCCTTSCEEEEEECCCSTTCCSCSSCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHH
T ss_pred CCCCCCCCCcCEEEEEcCCCCcccccccccccchhHHHHHHHhCCCEEEEEecCCCCCCChhhhHHHhhhcccccHHHHH
Confidence 987656678899999999876642 12343 578889999999999999998888887766666667777789999
Q ss_pred HHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCC
Q 005093 546 TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTE 625 (715)
Q Consensus 546 ~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (715)
++++++.+++.+|.++|+|+||||||++++.++.++|++++++|+.+|+.++..+.. .+.. .+..
T Consensus 588 ~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-------~~~~--------~~~~ 652 (741)
T 2ecf_A 588 RGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDS-------HYTE--------RYMD 652 (741)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGGGSBH-------HHHH--------HHHC
T ss_pred HHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCceEEEEEcCCCcchhhhcc-------ccch--------hhcC
Confidence 999999998878899999999999999999999999999999999999877542110 0000 0111
Q ss_pred CCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHH
Q 005093 626 SPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLN 705 (715)
Q Consensus 626 ~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~ 705 (715)
. .....+.+...+|...+.++++|+|++||++|.++|++++.+++++++..+++++++++++++|.+..... .++++.
T Consensus 653 ~-~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~-~~~~~~ 730 (741)
T 2ecf_A 653 L-PARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADA-LHRYRV 730 (741)
T ss_dssp C-TGGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCSSCCHHHH-HHHHHH
T ss_pred C-cccChhhhhhcCHHHHHhhCCCCEEEEccCCCCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCCCCCCch-hHHHHH
Confidence 1 23445667778899999999999999999999999999999999999999999999999999998865433 678999
Q ss_pred HHHHHHHhcC
Q 005093 706 IGLWFKKYCK 715 (715)
Q Consensus 706 i~~wl~~~l~ 715 (715)
+.+||+++|+
T Consensus 731 i~~fl~~~l~ 740 (741)
T 2ecf_A 731 AEAFLGRCLK 740 (741)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999999986
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=447.38 Aligned_cols=567 Identities=13% Similarity=0.130 Sum_probs=398.9
Q ss_pred eEEEEEEEeecCCCCccccccCC-Ccc-ccccceEEeeCCCCceEEEEecCCC-CCCeEEEEe-cCCccEEEEecCcccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAP-FPV-EMTGASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVH 90 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Spdg~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 90 (715)
...||+++..+ .+..+|+... +.. +...+..++|||||++|||....++ +..+++.++ .+|+......+...
T Consensus 93 ~~~l~~~~~~~--~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~-- 168 (695)
T 2bkl_A 93 KAILYWRQGES--GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG-- 168 (695)
T ss_dssp SCEEEEEESTT--SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--
T ss_pred EEEEEEEcCCC--CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--
Confidence 56788866543 3456665432 111 1124788999999999999987653 346788777 66654311111111
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
.+..++|||||+.|+|.+.+..... .........+||++++.
T Consensus 169 -------~~~~~~wspDg~~l~~~~~d~~~~~-------------------------------~~~~~~~~~~v~~~~l~ 210 (695)
T 2bkl_A 169 -------KYATPKWTPDSKGFYYEWLPTDPSI-------------------------------KVDERPGYTTIRYHTLG 210 (695)
T ss_dssp -------TTCCCEECTTSSEEEEEECCCCTTS-------------------------------CGGGGGGGCEEEEEETT
T ss_pred -------cccceEEecCCCEEEEEEecCCCCC-------------------------------ccccCCCCCEEEEEECC
Confidence 1258999999999999876532110 00000124789999999
Q ss_pred CCce--EeecCC-CCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccC
Q 005093 171 SGEV--QAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 247 (715)
Q Consensus 171 ~g~~--~~l~~~-~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 247 (715)
++.. +.+... ........+.|||||+. |++.+.... ...+||+++.
T Consensus 211 t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~----l~~~~~~~~-----------~~~~l~~~~~---------------- 259 (695)
T 2bkl_A 211 TEPSKDTVVHERTGDPTTFLQSDLSRDGKY----LFVYILRGW-----------SENDVYWKRP---------------- 259 (695)
T ss_dssp SCGGGCEEEECCCCCTTCEEEEEECTTSCC----EEEEEEETT-----------TEEEEEEECT----------------
T ss_pred CCchhceEEEecCCCCEEEEEEEECCCCCE----EEEEEeCCC-----------CceEEEEEcC----------------
Confidence 8873 233211 12234568899999999 999874321 2247999985
Q ss_pred CCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC---CCcccceeeeeeceecCCC
Q 005093 248 SEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN---FSSLEKIVDVIPVVQCAEG 324 (715)
Q Consensus 248 ~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~---~~lt~~~~~~~~~~~~~~~ 324 (715)
.+++.+.|+........+.| +||+ |++.++.+ .....|+++|+.+++. +.++... .+
T Consensus 260 -~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~-------~~~~~l~~~d~~~~~~~~~~~l~~~~----------~~ 319 (695)
T 2bkl_A 260 -GEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEG-------APRQRVFEVDPAKPARASWKEIVPED----------SS 319 (695)
T ss_dssp -TCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTT-------CTTCEEEEEBTTBCSGGGCEEEECCC----------SS
T ss_pred -CCCceEEeecCCCceEEEEe-cCCc-EEEEECCC-------CCCCEEEEEeCCCCCccCCeEEecCC----------CC
Confidence 66778888877666677777 7888 88887653 2346799999877543 2222110 00
Q ss_pred CCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-CCCceeEEEeecCCEEEEEEeCCCCCCe
Q 005093 325 DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQ 403 (715)
Q Consensus 325 ~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s~~~~~l~~~~~~~~~p~~ 403 (715)
. .+..+.|+ +..++++...++..+|+.+++.++..+.+... .+.+....++++++.++++.++..+|..
T Consensus 320 ~--------~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 320 A--------SLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp C--------EEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred C--------eEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 0 12234566 34688888888999999999876666666543 3322334567788999999999999999
Q ss_pred EEEEeecccCCCcceeeeccCCCCCCCchhhhhhccccceeeeecccccccccccCCCCceEEEEEEecCCCCCCCCCcE
Q 005093 404 VKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPL 483 (715)
Q Consensus 404 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~P~ 483 (715)
||+.++.+++ ...+ ... +. .++ ...+....+ .+...+|.++.++++.|+++...++.|+
T Consensus 390 v~~~d~~~g~-~~~l--~~~--~~-~~~--------~~~~~~~~~-------~~~~~dg~~i~~~~~~p~~~~~~~~~p~ 448 (695)
T 2bkl_A 390 IYKTSVSTGK-SELW--AKV--DV-PMN--------PEQYQVEQV-------FYASKDGTKVPMFVVHRKDLKRDGNAPT 448 (695)
T ss_dssp EEEEETTTCC-EEEE--EEC--CC-SSC--------GGGEEEEEE-------EEECTTSCEEEEEEEEETTCCCSSCCCE
T ss_pred EEEEECCCCc-EEEE--ecC--CC-CCC--------HHHCeEEEE-------EEECCCCCEEEEEEEECCCCCCCCCccE
Confidence 9999987654 1111 100 00 011 111222222 4556688999999999997666788999
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEE
Q 005093 484 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 563 (715)
Q Consensus 484 vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~ 563 (715)
||++|||+.......|......|+++||+|+++|+||++++|..|............++|+.+++++|++++.+|+++|+
T Consensus 449 vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~ 528 (695)
T 2bkl_A 449 LLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLA 528 (695)
T ss_dssp EEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEE
T ss_pred EEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCCcHHHHHHHHHHHHHcCCCCcccEE
Confidence 99999988776555666666778899999999999999999999877655555566689999999999999888999999
Q ss_pred EEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhh
Q 005093 564 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH 643 (715)
Q Consensus 564 l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 643 (715)
|+|+|+||++++.++.++|++|+++|+.+|+.++..+...... ..+...++. ....+..+.+...+|+..
T Consensus 529 i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~--~~~~~~~g~--------~~~~~~~~~~~~~sp~~~ 598 (695)
T 2bkl_A 529 IYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSG--RTWIPEYGT--------AEKPEDFKTLHAYSPYHH 598 (695)
T ss_dssp EEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTG--GGGHHHHCC--------TTSHHHHHHHHHHCGGGC
T ss_pred EEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCCC--cchHHHhCC--------CCCHHHHHHHHhcChHhh
Confidence 9999999999999999999999999999999887644321110 011111211 112345566778899999
Q ss_pred ccCCC--CcEEEEeeCCCCcCCchHHHHHHHHHHH---cCCcEEEEEeCCCCccCCCC-CchHHHHHHHHHHHHHhcC
Q 005093 644 ISKVK--TPTIFLLGAQDLRVPVSNGLQYARALRE---KGVETKVIVFPNDVHGIERP-QSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 644 ~~~i~--~P~Lii~G~~D~~v~~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~wl~~~l~ 715 (715)
+.+++ +|+||+||++|.+||+.++.+++++|+. .+.++++++++++||++..+ ....+.+..+++||.++|+
T Consensus 599 ~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 676 (695)
T 2bkl_A 599 VRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLD 676 (695)
T ss_dssp CCSSCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTTCCSCEEEEEETTCBTTBCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhccCCCCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 98876 7999999999999999999999999998 67899999999999998643 3355778889999999874
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=448.55 Aligned_cols=577 Identities=17% Similarity=0.229 Sum_probs=394.3
Q ss_pred EEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cC-----CccEEEEecCccc
Q 005093 16 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-----SQLEKEFHVPQTV 89 (715)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~ 89 (715)
..||++|+.++ +..+++... +.+..++|||||++|||+.+. .++... .+ ++..+++......
T Consensus 101 ~~i~~~d~~~~--~~~~l~~~~-----~~~~~~~~SpdG~~la~~~~~-----~i~v~~~~~~~~~~g~~~~~~~~~~~~ 168 (706)
T 2z3z_A 101 GGLVGFDMLAR--KVTYLFDTN-----EETASLDFSPVGDRVAYVRNH-----NLYIARGGKLGEGMSRAIAVTIDGTET 168 (706)
T ss_dssp TEEEEEETTTT--EEEEEECCT-----TCCTTCEECTTSSEEEEEETT-----EEEEEECBCTTSCCCCCEESCSCCBTT
T ss_pred CEEEEEECCCC--ceEEccCCc-----ccccCCcCCCCCCEEEEEECC-----eEEEEecCcccccCCCcEEeccCCCCC
Confidence 46788777554 334444433 457789999999999997542 577666 55 6666654432210
Q ss_pred --ccc-ccCC--CcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceE
Q 005093 90 --HGS-VYAD--GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSL 164 (715)
Q Consensus 90 --~~~-~~~~--~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 164 (715)
.+. ++.+ .....+.|||||++|+|.+.+..... .+........... .....|.. .|. ......|
T Consensus 169 ~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~-~~~~~~~~~~~~~------~~~~~y~~-~g~---~~~~~~l 237 (706)
T 2z3z_A 169 LVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVK-PTPIVDYHPLEAE------SKPLYYPM-AGT---PSHHVTV 237 (706)
T ss_dssp EEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSC-CEEEEECCSSSCE------EEEECCCB-TTS---CCCEEEE
T ss_pred eEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCc-eEEeeccCCCCCc------eEEeeCCC-CCC---CCCeeEE
Confidence 000 0000 01368999999999999874332211 1110000000000 00011111 111 1133789
Q ss_pred EEEEccCCceEeecCC-CCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhh
Q 005093 165 FVININSGEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELEL 243 (715)
Q Consensus 165 ~~~~~~~g~~~~l~~~-~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 243 (715)
++||+++++.+.+... .....+..+.|||||+. |++....... ....|+++|+
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~----l~~~~~~~~~----------~~~~v~~~d~------------ 291 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI----LYVAEVNRAQ----------NECKVNAYDA------------ 291 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE----EEEEEECTTS----------CEEEEEEEET------------
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCE----EEEEEeCCCC----------CeeEEEEEEC------------
Confidence 9999999998777311 22345678999999998 8887532211 2237999997
Q ss_pred hccCCCCC-CceecCCC--Cc---cccceeEcC--CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeee
Q 005093 244 KESSSEDL-PVVNLTES--IS---SAFFPRFSP--DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 315 (715)
Q Consensus 244 ~~~~~~~~-~~~~lt~~--~~---~~~~~~~sp--dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~ 315 (715)
.++ ..+.+... .. ....+.||| ||+.| +.+.++ +..+||.++..++..+.++.....
T Consensus 292 -----~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l-~~~~~~--------g~~~l~~~~~~~~~~~~l~~~~~~- 356 (706)
T 2z3z_A 292 -----ETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI-WQSRRD--------GWNHLYLYDTTGRLIRQVTKGEWE- 356 (706)
T ss_dssp -----TTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE-EEECTT--------SSCEEEEEETTSCEEEECCCSSSC-
T ss_pred -----CCCceeeEEEEccCCCeECccCCceeecCCCCEEE-EEEccC--------CccEEEEEECCCCEEEecCCCCeE-
Confidence 666 44444322 11 135689999 99854 555543 245799998666544445432211
Q ss_pred eeceecCCCCCccccccCCCCC-CccccCCCEEEEEeeeCC--eeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEE
Q 005093 316 IPVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGS--SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNII 392 (715)
Q Consensus 316 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~dg~~l~~~~~~~~--~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~ 392 (715)
+.. +.|+|||+.|++.+...+ ...||.+|+++++.+.++.... +....||++++.++
T Consensus 357 -------------------v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~spdg~~l~ 416 (706)
T 2z3z_A 357 -------------------VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESG-MHRTQLSPDGSAII 416 (706)
T ss_dssp -------------------EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSS-EEEEEECTTSSEEE
T ss_pred -------------------EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCc-eEEEEECCCCCEEE
Confidence 112 479999999988887654 5799999999999888875444 44568999999999
Q ss_pred EEEeCCCCCCeEEEEeecccCCCcceeeeccCCCCCCCchhhhhhccccceeeeecccccccccccCCCC-ceEEEEEEe
Q 005093 393 AVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQ-KPFEAIFVS 471 (715)
Q Consensus 393 ~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~l~~ 471 (715)
+..++...|++|++.++.+++ . + . ++..+ .+ ....+ +..+ .+.+...+| .++.++++.
T Consensus 417 ~~~~~~~~p~~i~l~d~~~~~-~-~--~------~~~~~-~~----~~~~~-----~~~~-~~~~~~~~g~~~~~~~~~~ 475 (706)
T 2z3z_A 417 DIFQSPTVPRKVTVTNIGKGS-H-T--L------LEAKN-PD----TGYAM-----PEIR-TGTIMAADGQTPLYYKLTM 475 (706)
T ss_dssp EEEECSSCSCEEEEEESSSCE-E-E--E------EECC-----------CC-----CCEE-EEEEECTTSSSEEEEEEEC
T ss_pred EEecCCCCCcEEEEEECCCCe-E-e--e------ccccc-hh----hhcCC-----CCcE-EEEEEcCCCCEEEEEEEEe
Confidence 999999999999999976543 1 1 1 11111 11 11111 1000 124455678 899999999
Q ss_pred cCCCCCCCCCcEEEEEcCCCCCCCC-ccchH----HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHH
Q 005093 472 SSHKKDCSCDPLIVVLHGGPHSVSL-SSYSK----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 546 (715)
Q Consensus 472 P~~~~~~~~~P~vv~iHGg~~~~~~-~~~~~----~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~ 546 (715)
|+++++.+++|+||++|||+..... ..|.. .++.|+++||.|+++|+||.++++..+.......++...++|+.+
T Consensus 476 P~~~~~~~~~p~iv~~HGg~~~~~~~~~~~~~~~~~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~ 555 (706)
T 2z3z_A 476 PLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMC 555 (706)
T ss_dssp CTTCCTTSCEEEEEECCCCTTCCCCCSCC----CCHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHH
T ss_pred CCCCCCCCCccEEEEecCCCCceeeccccccCchHHHHHHHhCCcEEEEEecCCCcccchhHHHHHhhccCCccHHHHHH
Confidence 9987667789999999998776532 24443 578899999999999999998888887766666777777899999
Q ss_pred HHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCC
Q 005093 547 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 626 (715)
Q Consensus 547 ~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (715)
+++++.+++.+|.++++|+||||||++++.++.++|++++++|+.+|+.++..+.. .+.. .+...
T Consensus 556 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-------~~~~--------~~~~~ 620 (706)
T 2z3z_A 556 GVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYAI-------MYGE--------RYFDA 620 (706)
T ss_dssp HHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCCCCGGGSBH-------HHHH--------HHHCC
T ss_pred HHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhCCCcEEEEEEcCCccchHHHHh-------hhhh--------hhcCC
Confidence 99999988878899999999999999999999999999999999999877542210 0000 11111
Q ss_pred CChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHH
Q 005093 627 PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 706 (715)
Q Consensus 627 ~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i 706 (715)
+ ....+.+...+|...+.++++|+|++||+.|.++|++++.+++++++.++++++++++|+++|.+... ...++++.+
T Consensus 621 ~-~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~i 698 (706)
T 2z3z_A 621 P-QENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGP-DRVHLYETI 698 (706)
T ss_dssp T-TTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEETTCCSSCCTT-HHHHHHHHH
T ss_pred c-ccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcc-cHHHHHHHH
Confidence 2 23345677788988999999999999999999999999999999999999999999999999998765 667889999
Q ss_pred HHHHHHhc
Q 005093 707 GLWFKKYC 714 (715)
Q Consensus 707 ~~wl~~~l 714 (715)
.+||+++|
T Consensus 699 ~~fl~~~l 706 (706)
T 2z3z_A 699 TRYFTDHL 706 (706)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99999886
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=442.32 Aligned_cols=567 Identities=14% Similarity=0.126 Sum_probs=386.8
Q ss_pred eEEEEEEEeec-CCCCccccccC-CCccc-cccceEEeeCCCCceEEEEecCCC-CCCeEEEEe-cCCccEEEEecCccc
Q 005093 15 KKFMLSTVISK-ENENSVTFQWA-PFPVE-MTGASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTV 89 (715)
Q Consensus 15 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~~-~~~~~~~~~Spdg~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ 89 (715)
...||+++... ++.+..+|+.. .+..+ ...+..++|||||++|||....++ +..+++.++ .+|+..........
T Consensus 132 ~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~- 210 (741)
T 1yr2_A 132 QSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVK- 210 (741)
T ss_dssp SCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEE-
T ss_pred EEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCce-
Confidence 47889866541 02233444322 22221 124678999999999999987752 225688777 66665443211111
Q ss_pred cccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEc
Q 005093 90 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 169 (715)
Q Consensus 90 ~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 169 (715)
+..++|||| +.|+|.+........ .........+||++++
T Consensus 211 ---------~~~~~wspD-~~l~~~~~~~~~~~~------------------------------~~~~~~~~~~v~~~~l 250 (741)
T 1yr2_A 211 ---------FSGLAWLGN-DALLYSRFAEPKEGQ------------------------------AFQALNYNQTVWLHRL 250 (741)
T ss_dssp ---------SCCCEESTT-SEEEEEECCCC--------------------------------------CCCCCEEEEEET
T ss_pred ---------eccEEEECC-CEEEEEEecCccccc------------------------------ccccCCCCCEEEEEEC
Confidence 158999999 999998754321000 0000002367999999
Q ss_pred cCCce--EeecCCCC-CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhcc
Q 005093 170 NSGEV--QAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 246 (715)
Q Consensus 170 ~~g~~--~~l~~~~~-~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 246 (715)
.++.. +.+..... ......+.|||||+. |++.+..... ...+||++|+
T Consensus 251 gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~----l~~~~~~~~~----------~~~~l~~~d~--------------- 301 (741)
T 1yr2_A 251 GTPQSADQPVFATPELPKRGHGASVSSDGRW----VVITSSEGTD----------PVNTVHVARV--------------- 301 (741)
T ss_dssp TSCGGGCEEEECCTTCTTCEEEEEECTTSCE----EEEEEECTTC----------SCCEEEEEEE---------------
T ss_pred CCCchhCEEEeccCCCCeEEEEEEECCCCCE----EEEEEEccCC----------CcceEEEEEC---------------
Confidence 88763 23311111 123567899999999 9998743211 2358999997
Q ss_pred CCCCC--C-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCC--CCCcccceeeeeeceec
Q 005093 247 SSEDL--P-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG--NFSSLEKIVDVIPVVQC 321 (715)
Q Consensus 247 ~~~~~--~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~--~~~lt~~~~~~~~~~~~ 321 (715)
+++ + .+.|+........+ ++|||++|+|.++.. ....+|+++|+.++. .+.++.....
T Consensus 302 --~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~-------~~~~~l~~~d~~~~~~~~~~l~~~~~~------- 364 (741)
T 1yr2_A 302 --TNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDG-------APLKKIVRVDLSGSTPRFDTVVPESKD------- 364 (741)
T ss_dssp --ETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTT-------CTTCEEEEEECSSSSCEEEEEECCCSS-------
T ss_pred --CCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCC-------CCCCEEEEEeCCCCccccEEEecCCCC-------
Confidence 555 5 67777665555555 469999999998874 235679999987742 2222211100
Q ss_pred CCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-CCCceeEEEeecCCEEEEEEeCCCC
Q 005093 322 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVD 400 (715)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s~~~~~l~~~~~~~~~ 400 (715)
.+..+.|+ ++.++++...++..+||.+++.++..+.+... .+.+....++++++.++++.++..+
T Consensus 365 ------------~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 365 ------------NLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp ------------EEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred ------------eEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 11223455 45688888888999999999876667777643 3333445667888999999999999
Q ss_pred CCeEEEEeecccCCCcceeeeccCCCCCCCchhhhhhccccceeeeecccccccccccCCCCceEEEEEEecCCCCCCCC
Q 005093 401 VPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSC 480 (715)
Q Consensus 401 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~ 480 (715)
|.+||++++.+++ .+. +..+...++ ...+....+ .+.+.+|.+|.++++.|++. .++
T Consensus 431 P~~i~~~d~~tg~--~~~----l~~~~~~~~--------~~~~~~~~~-------~~~~~dg~~i~~~~~~p~~~--~~~ 487 (741)
T 1yr2_A 431 PATVLALDPATAK--TTP----WEPVHLTFD--------PADFRVEQV-------FYPSKDGTKVPMFIVRRKDA--KGP 487 (741)
T ss_dssp EEEEEEEETTTTE--EEE----CSCCCCSSC--------GGGEEEEEE-------EEECTTSCEEEEEEEEETTC--CSC
T ss_pred CCEEEEEECCCCc--EEE----EecCCCCCC--------hhHCEEEEE-------EEEcCCCCEEEEEEEecCCC--CCC
Confidence 9999999987653 111 100000111 111222222 44566889999999999854 568
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|+||++|||+.......|......|+++||+|+++|+||++++|..|.......+....++|+.+++++|++++.++++
T Consensus 488 ~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~ 567 (741)
T 1yr2_A 488 LPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRH 567 (741)
T ss_dssp CCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSSCTT
T ss_pred CcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChH
Confidence 89999999988776666777777889999999999999999999999877655555556689999999999999888999
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCc
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 640 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 640 (715)
+|+|+|+|+||++++.++.++|++|+++|+.+|+.++..+........| ...++. ....+..+.+...+|
T Consensus 568 ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~--~~~~g~--------~~~~~~~~~~~~~sp 637 (741)
T 1yr2_A 568 GLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYW--VDDYGY--------PEKEADWRVLRRYSP 637 (741)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGG--HHHHCC--------TTSHHHHHHHHTTCG
T ss_pred HEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchh--HHHcCC--------CCCHHHHHHHHHcCc
Confidence 9999999999999999999999999999999999887543221110001 111111 112345667788999
Q ss_pred hhhccC-CCC-cEEEEeeCCCCcCCchHHHHHHHHHHH---cCCcEEEEEeCCCCccCCCCC-chHHHHHHHHHHHHHhc
Q 005093 641 ISHISK-VKT-PTIFLLGAQDLRVPVSNGLQYARALRE---KGVETKVIVFPNDVHGIERPQ-SDFESFLNIGLWFKKYC 714 (715)
Q Consensus 641 ~~~~~~-i~~-P~Lii~G~~D~~v~~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~~~~~-~~~~~~~~i~~wl~~~l 714 (715)
+.++.+ +++ |+||+||++|.+||+.++.+++++|+. .|.++++++++++||++..+. ...+....+.+||.++|
T Consensus 638 ~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 717 (741)
T 1yr2_A 638 YHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGKPIDKQIEETADVQAFLAHFT 717 (741)
T ss_dssp GGCCCTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSCCCSSCEEEEEC---------CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhhcCCCCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 999987 884 999999999999999999999999999 889999999999999976542 33578889999999887
Q ss_pred C
Q 005093 715 K 715 (715)
Q Consensus 715 ~ 715 (715)
+
T Consensus 718 ~ 718 (741)
T 1yr2_A 718 G 718 (741)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-49 Score=455.20 Aligned_cols=589 Identities=15% Similarity=0.163 Sum_probs=392.8
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCC-----CCCeEEEEe-cCCccEEEEecCcc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQT 88 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~ 88 (715)
...||++|+.++. ..+++...-. ....+..++|||||++|||..+.++ ....++..+ .+|+......+...
T Consensus 35 d~~i~~~~~~~g~--~~~~~~~~~~-~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~ 111 (719)
T 1z68_A 35 DNNIVLYNIETGQ--SYTILSNRTM-KSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRP 111 (719)
T ss_dssp TSCEEEEESSSCC--EEEEECHHHH-HTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSS
T ss_pred CCCEEEEEcCCCc--EEEEEccccc-cccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcc
Confidence 4468887776654 3444332200 0013788999999999999876321 123566555 55554100112222
Q ss_pred ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCC---------C---------CCCCCCcccC
Q 005093 89 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC---------N---------SWKGQGDWEE 150 (715)
Q Consensus 89 ~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---------~~~~~~~~~~ 150 (715)
. ..++|||||++|||..+.. ...+.............. . .....+.|.|
T Consensus 112 ~----------~~~~~SPDG~~la~~~~~~---i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP 178 (719)
T 1z68_A 112 I----------QYLCWSPVGSKLAYVYQNN---IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP 178 (719)
T ss_dssp B----------CCEEECSSTTCEEEEETTE---EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred c----------ccceECCCCCEEEEEECCe---EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence 2 7899999999999986321 111111111100000000 0 0112456777
Q ss_pred CcCcccCCcc-----------------------------------CceEEEEEccCCceE---eecC----CCCCCccce
Q 005093 151 DWGETYAGKR-----------------------------------QPSLFVININSGEVQ---AVKG----IPKSLSVGQ 188 (715)
Q Consensus 151 ~~g~~~~~~~-----------------------------------~~~l~~~~~~~g~~~---~l~~----~~~~~~~~~ 188 (715)
| |..++... ...|++||+++++.. .+.. ......+..
T Consensus 179 D-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (719)
T 1z68_A 179 N-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW 257 (719)
T ss_dssp T-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred C-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence 7 44443211 127999999998752 4410 012334678
Q ss_pred EEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEe----cccccchhhhhhhhccCCCCCCceecC-----CC
Q 005093 189 VVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR----VSLYKSEASELELKESSSEDLPVVNLT-----ES 259 (715)
Q Consensus 189 ~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lt-----~~ 259 (715)
++|||||+ ++++..... ....+|+++| + .+++.+.++ ..
T Consensus 258 ~~~SpD~~-----~~~~~~~~~----------~~~~~l~~~d~~~~~-----------------~~g~~~~~~~~~~~~~ 305 (719)
T 1z68_A 258 LTWVTDER-----VCLQWLKRV----------QNVSVLSICDFREDW-----------------QTWDCPKTQEHIEESR 305 (719)
T ss_dssp EEESSSSE-----EEEEEEESS----------TTEEEEEEEEECSSS-----------------SSEECCGGGEEEEECS
T ss_pred eEEeCCCe-----EEEEEeccc----------cCeEEEEEEcccCCC-----------------CCCceEEEEecccccC
Confidence 99999965 666532111 0123699999 6 666666665 23
Q ss_pred Ccccc-----ceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCC
Q 005093 260 ISSAF-----FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 334 (715)
Q Consensus 260 ~~~~~-----~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~ 334 (715)
...+. .|.|||||+.|+|.+... .+..+||++++.+++.+.++....++
T Consensus 306 ~~~~~~~~~~~~~~spdg~~l~~~~~~~-------~g~~~l~~~~~~~~~~~~lt~~~~~v------------------- 359 (719)
T 1z68_A 306 TGWAGGFFVSTPVFSYDAISYYKIFSDK-------DGYKHIHYIKDTVENAIQITSGKWEA------------------- 359 (719)
T ss_dssp SSCSSSSSCCCCEECTTSSCEEEEEECT-------TSCEEEEEESSCSTTCEECSCSSSCE-------------------
T ss_pred CceEccccCCccEECCCCCeEEEEEEcc-------CCceEEEEEECCCCceEecccCceEE-------------------
Confidence 34444 899999999999865543 23467999999887766666433221
Q ss_pred CCCCccccCCCEEEEEeee----CCeeEEEEEECCCC--cEEEecCC----CCCceeEEEeecCCEEEEEEeCCCCCCeE
Q 005093 335 ILSNPWLSDGCTMLLSSIW----GSSQVIISVNVSSG--ELLRITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQV 404 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~----~~~~~l~~~d~~tg--~~~~l~~~----~~~~~~~~~s~~~~~l~~~~~~~~~p~~l 404 (715)
..+.++ |++.|++++.. .+..+||.+++.+| +.+.++.. ...+....|+++++.+++..++++.| .+
T Consensus 360 -~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p-~~ 436 (719)
T 1z68_A 360 -INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIP-IS 436 (719)
T ss_dssp -EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSC-EE
T ss_pred -EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCC-eE
Confidence 122344 88889998876 56789999999766 45677642 12344568899999999988888877 57
Q ss_pred EEEeecccCCCcceeeeccCCCCCCCchhhhhhcccccee-eeecccccccccccCCCCceEEEEEEecCCCCCCCCCcE
Q 005093 405 KYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFS-IMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPL 483 (715)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~P~ 483 (715)
++.++.+++. .. +...|+.+...+....+. ... +++...+ .+++++++.|++++..+++|+
T Consensus 437 ~l~d~~~g~~-~~---------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~l~~~~~~P~~~~~~~~~p~ 498 (719)
T 1z68_A 437 TLHDGRTDQE-IK---------ILEENKELENALKNIQLPKEEI-------KKLEVDE-ITLWYKMILPPQFDRSKKYPL 498 (719)
T ss_dssp EEECSSSCCE-EE---------EEECCHHHHHHTTSBCCCEEEE-------EEEEETT-EEEEEEEEECTTCCSSSCEEE
T ss_pred EEEECCCCCE-EE---------EeecchhhhhhhccccCCceEE-------EEEecCC-eEEEEEEEeCCCCCCCCCccE
Confidence 7878755431 11 123344332223322221 111 1334445 899999999998766788999
Q ss_pred EEEEcCCCCCCC-Cccch-HHHHHH-HhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 484 IVVLHGGPHSVS-LSSYS-KSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 484 vv~iHGg~~~~~-~~~~~-~~~~~l-a~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
||++||++.... ...|. .....| +++||.|+++|+||.++++..+.......++...++|+.++++++.+++.+|.+
T Consensus 499 vl~~hG~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~ 578 (719)
T 1z68_A 499 LIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEK 578 (719)
T ss_dssp EEEECCCTTBCCCCCCCCCCHHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred EEEECCCCCcCcccccchhhHHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999886642 22332 234444 579999999999999988888776666677767799999999999998778899
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCC-ChhhHHHHHhcC
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP-SVEDLTRFHSKS 639 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s 639 (715)
+|+|+||||||++++.++.++|++|+++|+++|+.++..+.. .+... +.+.+ .....+.+...+
T Consensus 579 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-------~~~~~--------~~g~~~~~~~~~~~~~~~ 643 (719)
T 1z68_A 579 RIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYAS-------VYTER--------FMGLPTKDDNLEHYKNST 643 (719)
T ss_dssp EEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSBH-------HHHHH--------HHCCSSTTTTHHHHHHTC
T ss_pred eEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhcc-------ccchh--------hcCCcccccchhhhhhCC
Confidence 999999999999999999999999999999999886542210 00000 01111 123345677788
Q ss_pred chhhccCCCC-cEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 640 PISHISKVKT-PTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 640 p~~~~~~i~~-P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
|...+.++++ |+|++||++|.++|+.++.+++++|++++++++++++++++|.+ ..+...++++.+.+||+++|+
T Consensus 644 ~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~~~~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 644 VMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp SGGGGGGGTTSEEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTC-CTHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHhcCCCCcEEEEEeCCCCCcCHHHHHHHHHHHHHCCCceEEEEECcCCCCC-CcccHHHHHHHHHHHHHHhhC
Confidence 8888999988 89999999999999999999999999999999999999999998 445567889999999999885
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-47 Score=433.69 Aligned_cols=532 Identities=15% Similarity=0.099 Sum_probs=375.7
Q ss_pred cceEEeeC-CCCceEEEEecCCC-CCCeEEEEe-cCC-ccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 44 GASAVVPS-PSGSKLLVVRNPEN-ESPIQFELW-SQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 44 ~~~~~~~S-pdg~~la~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
....++|| |||++|||+...++ +..+++.++ .+| +. +. .... ..+..++|||||+.|+|.+.+..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~---~~~~------~~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IA---DKVS------GTNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CC---CCEE------EECSCCEECSSTTEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CC---cccc------CceeeEEEecCCCEEEEEEECCC
Confidence 46789999 99999999988653 334688888 666 42 11 1010 01268999999999999865320
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce--EeecCCCCCCccceEEEecCCCC
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~--~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
+ ...+||++++.++.. +.+...........+.|||||+.
T Consensus 244 ---------------------------------~------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~ 284 (751)
T 2xe4_A 244 ---------------------------------L------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNT 284 (751)
T ss_dssp ---------------------------------C------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSE
T ss_pred ---------------------------------C------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCE
Confidence 0 125899999988753 23311122223457889999999
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC--Cc--eecCCCCccccceeEcCC--
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PV--VNLTESISSAFFPRFSPD-- 271 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~lt~~~~~~~~~~~spd-- 271 (715)
|+|..+.. ..++||++|+ .++ +. +.++... ..+.|++|
T Consensus 285 ----l~~~~~~~------------~~~~l~~~d~-----------------~~~~~~~~~~~l~~~~---~~~~~s~~~~ 328 (751)
T 2xe4_A 285 ----LCIGSQSP------------ETAEVHLLDL-----------------RKGNAHNTLEIVRPRE---KGVRYDVQMH 328 (751)
T ss_dssp ----EEEEEECS------------SCEEEEEEES-----------------SSCTTCCCEEESSCCC---TTCCEEEEEE
T ss_pred ----EEEEecCC------------CCceEEEEEC-----------------CCCCCCceeEEeecCC---CCceEEEeee
Confidence 99987432 2358999997 443 34 5666432 34566666
Q ss_pred -CCeEEEEecCCCCCCCCccccceeEeeecCCC-CCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEE
Q 005093 272 -GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 348 (715)
Q Consensus 272 -g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~-~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~ 348 (715)
|++|+|.++.+. ....+|+++++.++ ..+. +.....+. .+.. ++.+++.|+
T Consensus 329 ~g~~l~~~t~~~~------a~~~~L~~~d~~~~~~~~~~li~~~~~~------------------~l~~--~~~~~~~lv 382 (751)
T 2xe4_A 329 GTSHLVILTNEGG------AVNHKLLIAPRGQPSDWSHVLVDHSEDV------------------FMES--IAVRSNYLV 382 (751)
T ss_dssp TTTEEEEEECTTT------CTTCEEEEEETTSTTCCCCEEECCCSSE------------------EEEE--EEECSSEEE
T ss_pred eCCEEEEEeCCCC------CCCcEEEEEcCCCcccceeeEECCCCCc------------------EEEE--EEEECCEEE
Confidence 999999998741 23568999998752 3233 22111100 0111 344567899
Q ss_pred EEeeeCCeeEEEEEEC-------CCCc-EEEecCCCCCceeEEE------eecCCEEEEEEeCCCCCCeEEEEeecccCC
Q 005093 349 LSSIWGSSQVIISVNV-------SSGE-LLRITPAESNFSWSLL------TLDGDNIIAVSSSPVDVPQVKYGYFVDKAN 414 (715)
Q Consensus 349 ~~~~~~~~~~l~~~d~-------~tg~-~~~l~~~~~~~~~~~~------s~~~~~l~~~~~~~~~p~~l~~~~~~~~~~ 414 (715)
+....++..+|+.+++ ++++ .+.|...... ....+ +.+++.++++.+++..|+++|.+++.+++
T Consensus 383 ~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~- 460 (751)
T 2xe4_A 383 VAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPI-FTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS- 460 (751)
T ss_dssp EEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSS-CEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC-
T ss_pred EEEEeCCEEEEEEEecccccccccCCccceEECCCCce-eEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc-
Confidence 9999999999999996 6777 7777544322 22344 45778899999999999999999987553
Q ss_pred CcceeeeccCCCCC-CCchhhhhhccccceeeeecccccccccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCC
Q 005093 415 KGTWSWLNVSSPIS-RCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS 493 (715)
Q Consensus 415 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~ 493 (715)
...+ ... +.. .++ ...+.... +.+.+.+|..|+++++.|++....++.|+||++|||+..
T Consensus 461 ~~~l--~~~--~~~~~~~--------~~~~~~~~-------~~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~HGg~~~ 521 (751)
T 2xe4_A 461 RTAV--KVR--EVGGGFD--------AANYKVER-------RFATAPDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGL 521 (751)
T ss_dssp EEEE--EEC--CCCTTCC--------GGGEEEEE-------EEEECTTCCEEEEEEEEETTSCTTSCCCEEEECCCCTTC
T ss_pred EEEE--ecc--ccccCCC--------ccceEEEE-------EEEECCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCc
Confidence 1111 100 010 111 11122222 245566889999999999876566789999999998877
Q ss_pred CCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhh-cCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHH
Q 005093 494 VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGF 572 (715)
Q Consensus 494 ~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~-~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~ 572 (715)
.....|....+.|+++||+|+++|+||++++|..|.. .....++...++|+.+++++|++++.+|++||+|+|+|+||+
T Consensus 522 ~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~ 601 (751)
T 2xe4_A 522 SMDPQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGL 601 (751)
T ss_dssp CCCCCCCGGGHHHHTTTCEEEEECCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHH
T ss_pred CCCCcchHHHHHHHhCCcEEEEEeeCCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHH
Confidence 6555676667789999999999999999999999877 555556667789999999999999889999999999999999
Q ss_pred HHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCc-E
Q 005093 573 LTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTP-T 651 (715)
Q Consensus 573 ~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~ 651 (715)
+++.++.++|++|+++|+.+|+.++.........+... ..+ ..+......+..+.+...+|+.++.++++| +
T Consensus 602 la~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~--~~~-----~~~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~ 674 (751)
T 2xe4_A 602 LMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTT--GEW-----EEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNI 674 (751)
T ss_dssp HHHHHHHHCGGGCSEEEEESCCCCHHHHHTCTTSTTHH--HHT-----TTTCCTTSHHHHHHHHHHCTGGGCCSSCCCEE
T ss_pred HHHHHHHhCchheeEEEEeCCcchHHhhhcccCcccch--hhH-----HHcCCCCCHHHHHHHHhcChhhhhccCCCCce
Confidence 99999999999999999999999876553322221110 011 111111123344567788999999999997 9
Q ss_pred EEEeeCCCCcCCchHHHHHHHHHHHcC---CcEEEEEeCCCCccCCCCC-chHHHHHHHHHHHHHhcC
Q 005093 652 IFLLGAQDLRVPVSNGLQYARALREKG---VETKVIVFPNDVHGIERPQ-SDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g---~~~~~~~~~~~~H~~~~~~-~~~~~~~~i~~wl~~~l~ 715 (715)
||+||++|.+||+.++.+++++|+.++ ..+.+.+++++||++.... ...+....+.+||.++|+
T Consensus 675 Lii~G~~D~~vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~ 742 (751)
T 2xe4_A 675 MVQCGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLK 742 (751)
T ss_dssp EEEEETTCSSSCTHHHHHHHHHHHHHCCSCCCEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999984 4566777799999987543 344567789999999874
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=359.71 Aligned_cols=471 Identities=14% Similarity=0.133 Sum_probs=324.7
Q ss_pred ceEEEEEccCCc--eEeec-CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh
Q 005093 162 PSLFVININSGE--VQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238 (715)
Q Consensus 162 ~~l~~~~~~~g~--~~~l~-~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 238 (715)
.++|.+.+.|.. -+.+- +..... .....-++|++....+++.... .+ ...+++|.++++.
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~-~~----------~~~~~~~~~~~~~----- 278 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYI-YVSAGKLLSDTISSSLIFISAN-KD----------FYNYDNYILDTKY----- 278 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSC-EEEEEESSCTTTCSSEEEEEEE-SS----------SSCEEEEEEECSS-----
T ss_pred CEEEEEECCCChHHCeEEeccCCCce-EEEEEEecCCCceEEEEEEEEe-cc----------cCceeEEEEcCCC-----
Confidence 679999886653 22221 122222 2234456777741001232221 11 1235889988610
Q ss_pred hhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC-----C---C-cc
Q 005093 239 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-----F---S-SL 309 (715)
Q Consensus 239 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~-----~---~-lt 309 (715)
..++..+|..+.. ..+.++++|+.++++..+-.. .|......+|+++++++... . . ++
T Consensus 279 ----------~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (711)
T 4hvt_A 279 ----------KNLKLQKINMPSD--ATLQGSFKEYVFWLLRSDWKF-KSHNIKAGSLVALHFTDLLKTESDKTSLKILFT 345 (711)
T ss_dssp ----------SSCEEEECCSCTT--CEEEEEETTEEEEECSSCEEE-TTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC
T ss_pred ----------CCCcceEeecCCc--ceEeeeECCEEEEEECccccc-ccccCCCCeEEEEECCcccccccccccceEEEC
Confidence 1245455643332 335567777544444332110 00112356799999876421 1 1 11
Q ss_pred cceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc--EEE-ecCC-CCCceeEEEe
Q 005093 310 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE--LLR-ITPA-ESNFSWSLLT 385 (715)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~--~~~-l~~~-~~~~~~~~~s 385 (715)
...+ ..+..+.|..+ .++++...++..+|+.+++.+|+ .+. +... .+.++....+
T Consensus 346 ~~~~-------------------~~l~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~ 404 (711)
T 4hvt_A 346 PTAN-------------------EVFNFISTTKD--RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSY 404 (711)
T ss_dssp CCTT-------------------EEEEEEEECSS--CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECC
T ss_pred CCCC-------------------CeEEEEEEECC--EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeec
Confidence 1111 12334567755 58888888999999999988774 444 4333 2334434455
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEeecccCCCcceeeeccCCCCCCCchhhhhhccccceeeeecccccccccccCCCCceE
Q 005093 386 LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPF 465 (715)
Q Consensus 386 ~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l 465 (715)
++++.+++..+++..|+.++++++. ++ ... +...+.. +....+....+ .+++.+|.+|
T Consensus 405 ~~~~~~~~~~ss~~~P~~~~~~d~~-~~-~~~---------l~~~~~~----~~~~~~~~e~v-------~~~s~DG~~i 462 (711)
T 4hvt_A 405 EEEEEALITIENSIVPPTIYLWVKT-HE-LKI---------IRKALYS----FDSENYVLEQK-------EATSFDGVKI 462 (711)
T ss_dssp TTCSCEEEEEECSSSCCEEEEECTT-SC-EEE---------EECCSSC----CCGGGEEEEEE-------EEECTTSCEE
T ss_pred CcCCEEEEEEecCCCCCEEEEEeCC-Cc-EEE---------EecCCcc----cCcccCeeEEE-------EEECCCCeEE
Confidence 6788999999999999999999976 32 111 1111111 11122222222 5566789999
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHH-HHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhH
Q 005093 466 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 544 (715)
Q Consensus 466 ~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~-~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~ 544 (715)
+++++.|++.+..++.|+||++|||++......|.... +.|+++||+|+++|+||++++|..|.......++...++|+
T Consensus 463 ~~~l~~P~~~~~~~~~P~vl~~HGG~~~~~~~~~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~ 542 (711)
T 4hvt_A 463 PYFLVYKKGIKFDGKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDF 542 (711)
T ss_dssp EEEEEEETTCCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHH
T ss_pred EEEEEecCCCCCCCCccEEEEECCCCCCCCCCcccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHH
Confidence 99999999876678999999999998877666776655 58899999999999999999999998887777777789999
Q ss_pred HHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCC
Q 005093 545 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFT 624 (715)
Q Consensus 545 ~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (715)
.+++++|++++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+........| ...++.
T Consensus 543 ~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~--~~~~G~------- 613 (711)
T 4hvt_A 543 FAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSW--VTEYGD------- 613 (711)
T ss_dssp HHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGG--HHHHCC-------
T ss_pred HHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCceEEEEEeCCccchhhhhccccchHH--HHHhCC-------
Confidence 99999999999899999999999999999999999999999999999999987655332211111 111221
Q ss_pred CCCChhhHHHHHhcCchhhccCCCC--cEEEEeeCCCCcCCchHHHHHHHHH-HHcCCcEEEEEeCCCCccCCCC-CchH
Q 005093 625 ESPSVEDLTRFHSKSPISHISKVKT--PTIFLLGAQDLRVPVSNGLQYARAL-REKGVETKVIVFPNDVHGIERP-QSDF 700 (715)
Q Consensus 625 ~~~~~~~~~~~~~~sp~~~~~~i~~--P~Lii~G~~D~~v~~~~~~~~~~~l-~~~g~~~~~~~~~~~~H~~~~~-~~~~ 700 (715)
....+..+.+...+|+.++.++++ |+||+||++|.+||+.++.+++++| ++.|.+++++++++++|++... ....
T Consensus 614 -p~~~~~~~~l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~~~~g~pv~l~~~p~~gHg~~~~~~~~~ 692 (711)
T 4hvt_A 614 -PEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNPNTKTYFLESKDSGHGSGSDLKESA 692 (711)
T ss_dssp -TTSHHHHHHHHHHCGGGSCCTTSCCCEEEEEEETTCCSSCTHHHHHHHHHHTTCTTCCEEEEEESSCCSSSCSSHHHHH
T ss_pred -CcCHHHHHHHHHcCHHHHHhhcCCCCCEEEEecCCCCcCChHHHHHHHHHHHHHcCCCEEEEEECCCCCcCcCCcchHH
Confidence 122345677888999999999886 9999999999999999999999999 9999999999999999998653 3345
Q ss_pred HHHHHHHHHHHHhcC
Q 005093 701 ESFLNIGLWFKKYCK 715 (715)
Q Consensus 701 ~~~~~i~~wl~~~l~ 715 (715)
.....+.+||.++|+
T Consensus 693 ~~~~~i~~FL~~~Lg 707 (711)
T 4hvt_A 693 NYFINLYTFFANALK 707 (711)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 667789999999875
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=215.81 Aligned_cols=231 Identities=16% Similarity=0.199 Sum_probs=170.3
Q ss_pred ccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 457 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
+...+|..+.+++..|......++.|+||++|||++... ...+...+..|+++||.|+++|+||.+.... ..
T Consensus 19 ~~~~~g~~l~~~~~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~-------~~ 91 (276)
T 3hxk_A 19 FSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTN-------YN 91 (276)
T ss_dssp CCCBTTBEEEEECCCC------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCC-------SC
T ss_pred ccCCCCeEEEEEEeCCcccccCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCC-------CC
Confidence 344577888866655543223478899999999775433 3456678889999999999999999543210 01
Q ss_pred CCccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhh-CCCceeEEEecCCcchhhhhccCCCCCCcee
Q 005093 536 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCY 611 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 611 (715)
.......|+.++++++.+.. .+|.++|+|+|||+||.+++.++.+ .+.+++++|+.+|+.++........ .
T Consensus 92 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~~~~--~--- 166 (276)
T 3hxk_A 92 FLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSDL--S--- 166 (276)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCSSSS--S---
T ss_pred cCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCCcch--h---
Confidence 11234789999999998864 3788999999999999999999987 6889999999999876543211100 0
Q ss_pred eeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 005093 612 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 691 (715)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 691 (715)
...+. + +.. ...++...+.++.+|+|++||++|.++|++++..+++.+++.+.+++++++++++|
T Consensus 167 --------~~~~~--~--~~~---~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~~H 231 (276)
T 3hxk_A 167 --------HFNFE--I--ENI---SEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPH 231 (276)
T ss_dssp --------SSCCC--C--SCC---GGGBTTTTCCTTSCCEEEEEETTCSSSCTHHHHHHHHHHHTTTCCEEEEEESCCCT
T ss_pred --------hhhcC--c--hhh---hhCChhhccccCCCCEEEEecCCCceeChHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence 01111 1 111 44567777888899999999999999999999999999999999999999999999
Q ss_pred cCCCCCc------------hHHHHHHHHHHHHHhc
Q 005093 692 GIERPQS------------DFESFLNIGLWFKKYC 714 (715)
Q Consensus 692 ~~~~~~~------------~~~~~~~i~~wl~~~l 714 (715)
++..... ..++++.+.+||+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~ 266 (276)
T 3hxk_A 232 GVSLANRTTAPSDAYCLPSVHRWVSWASDWLERQI 266 (276)
T ss_dssp TCTTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHH
T ss_pred CccccCccccccccccCchHHHHHHHHHHHHHhCc
Confidence 8875333 3568888999998864
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-24 Score=211.19 Aligned_cols=208 Identities=17% Similarity=0.182 Sum_probs=143.7
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC-
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG- 537 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~- 537 (715)
+.||.+|.|+++.|+ ...+.|+||++||++.......+...++.|+++||+|+++|+||.+..+............
T Consensus 37 ~~dG~~i~g~l~~P~---~~~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~~~~~~~~~~~ 113 (259)
T 4ao6_A 37 EVDGRTVPGVYWSPA---EGSSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVG 113 (259)
T ss_dssp EETTEEEEEEEEEES---SSCCSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC-------------CCGGG
T ss_pred eeCCeEEEEEEEeCC---CCCCCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCCCCCCCCcccccccchhhh
Confidence 458999999999997 4567899999999887655556777889999999999999999965443322111111110
Q ss_pred --------------ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC
Q 005093 538 --------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 603 (715)
Q Consensus 538 --------------~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~ 603 (715)
...+.|..++++++... +|+++|+++|+|+||.+++.++...| +++++++..+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~p-ri~Aav~~~~~~~~------ 184 (259)
T 4ao6_A 114 LDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDK-RIKVALLGLMGVEG------ 184 (259)
T ss_dssp STTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCT-TEEEEEEESCCTTS------
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCC-ceEEEEEecccccc------
Confidence 01134667777877665 68899999999999999999999876 56666654332110
Q ss_pred CCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEE
Q 005093 604 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 683 (715)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 683 (715)
... .++...+.++++|+|++||++|.+||++++.++++++. ..+.++
T Consensus 185 -----------------------~~~--------~~~~~~a~~i~~P~Li~hG~~D~~vp~~~~~~l~~al~--~~~k~l 231 (259)
T 4ao6_A 185 -----------------------VNG--------EDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLG--TKQKTL 231 (259)
T ss_dssp -----------------------TTH--------HHHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCC--CSSEEE
T ss_pred -----------------------ccc--------cchhhhhccCCCCEEEEecCCCCCCCHHHHHHHHHHhC--CCCeEE
Confidence 001 12345567899999999999999999999999999884 345678
Q ss_pred EEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 684 IVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 684 ~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
+++++..|.. ...+..+.+++||++|||
T Consensus 232 ~~~~G~H~~~----p~~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 232 HVNPGKHSAV----PTWEMFAGTVDYLDQRLK 259 (259)
T ss_dssp EEESSCTTCC----CHHHHTHHHHHHHHHHCC
T ss_pred EEeCCCCCCc----CHHHHHHHHHHHHHHhcC
Confidence 8998754433 345678899999999997
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=210.41 Aligned_cols=214 Identities=17% Similarity=0.216 Sum_probs=162.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhh-------cCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-------SLP 533 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~-------~~~ 533 (715)
+|..+.++++.|++ ..++.|+||++||.... ...+...++.|+++||.|+++|++|.++....+.. ...
T Consensus 14 ~~~~~~~~~~~p~~--~~~~~p~vv~~HG~~g~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~~~~~~~~~~~~~~~ 89 (241)
T 3f67_A 14 QGENMPAYHARPKN--ADGPLPIVIVVQEIFGV--HEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKELVS 89 (241)
T ss_dssp TTEEEEEEEEEETT--CCSCEEEEEEECCTTCS--CHHHHHHHHHHHHTTCEEEEECTTTTTCCGGGCCSHHHHHHHTGG
T ss_pred CCcceEEEEecCCC--CCCCCCEEEEEcCcCcc--CHHHHHHHHHHHHCCcEEEEecccccCCCCCchhhHHHHHHHhhh
Confidence 77899999999984 33678999999995443 34677788899999999999999986543322110 000
Q ss_pred CCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeee
Q 005093 534 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 613 (715)
Q Consensus 534 ~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 613 (715)
........+|+.++++++.++. +|.++|+|+|||+||.+++.++.++|+ ++++++.++..... .
T Consensus 90 ~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~~-------~------- 153 (241)
T 3f67_A 90 KVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVGE-------K------- 153 (241)
T ss_dssp GSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSCC-------C-------
T ss_pred cCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccCC-------C-------
Confidence 0111234789999999999887 788999999999999999999999887 66776655532100 0
Q ss_pred ccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 614 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
..+...+|...+.++++|+|+++|++|..+|++.+..+++.+++.+.+++++++++++|.+
T Consensus 154 -------------------~~~~~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 214 (241)
T 3f67_A 154 -------------------SLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHAF 214 (241)
T ss_dssp -------------------CSSSCCCHHHHGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHHHTTCSEEEEEETTCCTTT
T ss_pred -------------------ccCCccCHHHhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCcce
Confidence 0112244556677889999999999999999999999999999999999999999999988
Q ss_pred CCC-------CchHHHHHHHHHHHHHh
Q 005093 694 ERP-------QSDFESFLNIGLWFKKY 713 (715)
Q Consensus 694 ~~~-------~~~~~~~~~i~~wl~~~ 713 (715)
... ....+.++.+++||++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 215 NADYRASYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp TCTTSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 632 22356788999999865
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-24 Score=224.73 Aligned_cols=323 Identities=14% Similarity=0.111 Sum_probs=202.5
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceE-----EeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccc
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASA-----VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVH 90 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 90 (715)
.+|. ....+...++||..+ +.... |+|||||++|||.+..+ +..++|.++ .+++.++++......
T Consensus 12 ~~~~--~~~~g~~~~~lt~~~-----~~~~~~~~~~~~~SpDg~~l~~~~~~~-g~~~l~~~d~~~g~~~~lt~~~~~~- 82 (388)
T 3pe7_A 12 DTYQ--DASTGAQVTRLTPPD-----VTCHRNYFYQKCFTRDGSKLLFGGAFD-GPWNYYLLDLNTQVATQLTEGRGDN- 82 (388)
T ss_dssp EEEE--CTTTCCEEEECSCTT-----SCEECCCTTSCCBCTTSCEEEEEECTT-SSCEEEEEETTTCEEEECCCSSCBC-
T ss_pred eEEe--cCCCCcceEEecCCc-----ccccchhhcCccCCCCCCEEEEEEcCC-CCceEEEEeCCCCceEEeeeCCCCC-
Confidence 4565 233444567777654 33333 89999999999998755 667899888 677777766543222
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCC--cccCCcCccc------------
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG--DWEEDWGETY------------ 156 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~------------ 156 (715)
...+.|||||++|+|....... ..+................+.... ...++ |..+
T Consensus 83 --------~~~~~~spdg~~l~~~~~~~~l--~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~d-g~~l~~~~~~~~~~~~ 151 (388)
T 3pe7_A 83 --------TFGGFLSPDDDALFYVKDGRNL--MRVDLATLEENVVYQVPAEWVGYGTWVANSD-CTKLVGIEIRREDWVP 151 (388)
T ss_dssp --------SSSCEECTTSSEEEEEETTTEE--EEEETTTCCEEEEEECCTTEEEEEEEEECTT-SSEEEEEEEEGGGCCC
T ss_pred --------ccceEEcCCCCEEEEEeCCCeE--EEEECCCCcceeeeechhhcccccceeECCC-CCeeccccccCccccc
Confidence 1367899999999998743210 011111110000000000000000 01111 1111
Q ss_pred -----------CCccCceEEEEEccCCceEeecCCCCCCccceEEEec-CCCCCccEEEEEeecCccceeeeeeeecCCc
Q 005093 157 -----------AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 224 (715)
Q Consensus 157 -----------~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~sp-dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~ 224 (715)
.......|+++|+++|+.+.+ .........+.||| ||+. |+|....... ....
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~~~~~sp~dg~~----l~~~~~~~~~---------~~~~ 216 (388)
T 3pe7_A 152 LTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI--LQENQWLGHPIYRPYDDST----VAFCHEGPHD---------LVDA 216 (388)
T ss_dssp CCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE--EEESSCEEEEEEETTEEEE----EEEEECSCTT---------TSSC
T ss_pred ccccchhhhhhccCCcceEEEEECCCCceEEe--ecCCccccccEECCCCCCE----EEEEEecCCC---------CCcc
Confidence 112347899999999999888 34444567899999 9999 9998742110 1235
Q ss_pred eEEEEecccccchhhhhhhhccCCCCCCceecCCCCc--cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCC
Q 005093 225 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~--~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
+||.+|+ .++..+.++.... .+..|.|||||++|+|.+.... .....||++|+.+
T Consensus 217 ~l~~~d~-----------------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~------~~~~~l~~~d~~~ 273 (388)
T 3pe7_A 217 RMWLINE-----------------DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKG------SPDRFIYSADPET 273 (388)
T ss_dssp SEEEEET-----------------TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETT------CCCEEEEEECTTT
T ss_pred eEEEEeC-----------------CCCceEEeeeCCCCcccccceECCCCCEEEEEecCCC------CCcceEEEEecCC
Confidence 8999997 7778888887653 4678999999999999987642 1123599999998
Q ss_pred CCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee------CCeeEEEEEECCCCcEEEecCCC
Q 005093 303 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW------GSSQVIISVNVSSGELLRITPAE 376 (715)
Q Consensus 303 ~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~------~~~~~l~~~d~~tg~~~~l~~~~ 376 (715)
++.+.++.... .. .+........|+|||+.|++.... .+...||.+|+++++.++++...
T Consensus 274 g~~~~l~~~~~-~~-------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 339 (388)
T 3pe7_A 274 LENRQLTSMPA-CS-------------HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD 339 (388)
T ss_dssp CCEEEEEEECC-EE-------------EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECC
T ss_pred CceEEEEcCCC-ce-------------eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc
Confidence 77655432211 00 000123345799999988887654 55678999999999999988665
Q ss_pred C-----------CceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 377 S-----------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 377 ~-----------~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
. ......|++||+.|++.+... ..++||++++..+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 340 TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-GKPALYLATLPES 385 (388)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCGG
T ss_pred CcccccccccccCCCCccCCCCCCEEEEEecCC-CceeEEEEECChh
Confidence 4 234468999999999887654 5567999887543
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-24 Score=209.23 Aligned_cols=240 Identities=13% Similarity=0.167 Sum_probs=161.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC-cc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-SQ 539 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~-~~ 539 (715)
+|.+++++++.|++ ..++.|+||++||.+.......|...++.|+++||.|+++|+|| +|.+.... .... ..
T Consensus 9 ~g~~l~~~~~~p~~--~~~~~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~--~~~~~~~ 81 (251)
T 2wtm_A 9 DGIKLNAYLDMPKN--NPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYG---HGKSDGKF--EDHTLFK 81 (251)
T ss_dssp TTEEEEEEEECCTT--CCSSEEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTT---STTSSSCG--GGCCHHH
T ss_pred CCcEEEEEEEccCC--CCCCCCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCC---CCCCCCcc--ccCCHHH
Confidence 77899999998863 23467899999996655334567778889999999999999999 44432110 0111 12
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCC
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 619 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (715)
..+|+.++++++.+...+ ++++|+||||||.+++.+|.++|++++++|+++|.................+........
T Consensus 82 ~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (251)
T 2wtm_A 82 WLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDE 159 (251)
T ss_dssp HHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETTEECBTTBCCSE
T ss_pred HHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhccccCCchhcchH
Confidence 256778888888665323 589999999999999999999999999999999875432111000000000000000000
Q ss_pred CCCCCCCC-ChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCc
Q 005093 620 KDSFTESP-SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 698 (715)
Q Consensus 620 ~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 698 (715)
...+.... ...........++...+.++++|+|+++|++|..+|++.+..+++.+ .+++++++++++|.+ .+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~~----~~~~~~~~~~~gH~~--~~~ 233 (251)
T 2wtm_A 160 LDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQY----KNCKLVTIPGDTHCY--DHH 233 (251)
T ss_dssp EEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSCHHHHHHHHHHS----SSEEEEEETTCCTTC--TTT
T ss_pred HhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcChHHHHHHHHhC----CCcEEEEECCCCccc--chh
Confidence 00000000 01112222234455567788999999999999999998888777665 358899999999988 566
Q ss_pred hHHHHHHHHHHHHHhcC
Q 005093 699 DFESFLNIGLWFKKYCK 715 (715)
Q Consensus 699 ~~~~~~~i~~wl~~~l~ 715 (715)
..++.+.+.+||+++++
T Consensus 234 ~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 234 LELVTEAVKEFMLEQIA 250 (251)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 67899999999998764
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-23 Score=207.26 Aligned_cols=219 Identities=17% Similarity=0.218 Sum_probs=162.3
Q ss_pred CCceEEEEEEecCC---CCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 461 AQKPFEAIFVSSSH---KKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 461 ~g~~l~~~l~~P~~---~~~~~~~P~vv~iHGg~~~~~-~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
+|..+.+.+|.|+. +...++.|+||++|||++... ...+...+..|+++||.|+++|+||.+.. +. .
T Consensus 12 ~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~--------~~-~ 82 (277)
T 3bxp_A 12 AAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGD--------QS-V 82 (277)
T ss_dssp TTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTT--------CC-C
T ss_pred CCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCC--------Cc-c
Confidence 56778888999973 234577899999999765432 34567788899999999999999994311 11 1
Q ss_pred CccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhC--------------CCceeEEEecCCcchhhh
Q 005093 537 GSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--------------PDKFVAAAARNPLCNLAL 599 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--------------p~~~~~~v~~~~~~~~~~ 599 (715)
......|+.++++++.+.. .++.++|+|+|||+||.+++.++.++ +.+++++|+.+|+.++..
T Consensus 83 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~~~ 162 (277)
T 3bxp_A 83 YPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTA 162 (277)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEEEEESCCCBTTS
T ss_pred CchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEEEEeCCcccCCC
Confidence 2234789999999998762 26778999999999999999999885 678999999999876321
Q ss_pred hccCCCCCCceeeeccCCCCCCCCCCCCChhhHH-----HHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHH
Q 005093 600 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT-----RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 674 (715)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (715)
... . ..... .....+|...+.++.+|+|++||++|.++|++++..+++.+
T Consensus 163 ~~~--------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l 217 (277)
T 3bxp_A 163 GFP--------------T-----------TSAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAM 217 (277)
T ss_dssp SSS--------------S-----------SHHHHHHHCSCGGGSBGGGGCCTTSCCEEEEECTTCCCSCTHHHHHHHHHH
T ss_pred CCC--------------C-----------ccccchhccchhhhcCHhhccccCCCCEEEEeeCCCCccChHHHHHHHHHH
Confidence 100 0 00001 12345666777788899999999999999999999999999
Q ss_pred HHcCCcEEEEEeCCCCccCCCCCc--------------hHHHHHHHHHHHHHh
Q 005093 675 REKGVETKVIVFPNDVHGIERPQS--------------DFESFLNIGLWFKKY 713 (715)
Q Consensus 675 ~~~g~~~~~~~~~~~~H~~~~~~~--------------~~~~~~~i~~wl~~~ 713 (715)
++.+.+++++++++++|.+..... ..++++.+.+||+++
T Consensus 218 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 270 (277)
T 3bxp_A 218 LQHQVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQ 270 (277)
T ss_dssp HHTTCCEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCeEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhc
Confidence 999999999999999997754332 357888999999875
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=217.72 Aligned_cols=216 Identities=16% Similarity=0.166 Sum_probs=169.3
Q ss_pred cccCC-CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch----------HHHHHHHhCCcEEEEEcCCCCCCC
Q 005093 456 NLTKG-AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS----------KSLAFLSSVGYSLLIVNYRGSLGF 524 (715)
Q Consensus 456 ~~~~~-~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~----------~~~~~la~~G~~vi~~d~rG~~~~ 524 (715)
.+.+. +|..+.+++|.|+++++.+++|+||++||+++........ ....+....|+.|+++|++|.+++
T Consensus 148 ~~~~~~dg~~l~~~v~~P~~~~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~~g~~~~ 227 (380)
T 3doh_A 148 TFKDPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSW 227 (380)
T ss_dssp EEECTTTCCEEEEEEECCSSCCTTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECCCTTCCS
T ss_pred eeccCCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecCCCCCcc
Confidence 45666 8899999999999876788899999999977543221111 012334578899999999998888
Q ss_pred chhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC
Q 005093 525 GEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 604 (715)
Q Consensus 525 g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~ 604 (715)
+..+..............|+.++++++.++..+|+++|+|+|||+||++++.++.++|++|+++++++|..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~~------- 300 (380)
T 3doh_A 228 STLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDV------- 300 (380)
T ss_dssp BTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCG-------
T ss_pred cccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCCh-------
Confidence 7776543333334556889999999999987788899999999999999999999999999999999986410
Q ss_pred CCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCC-CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEE
Q 005093 605 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 683 (715)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 683 (715)
..+..+. +|+|++||+.|..+|++++.+++++|++.|.++++
T Consensus 301 -------------------------------------~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 343 (380)
T 3doh_A 301 -------------------------------------SKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRY 343 (380)
T ss_dssp -------------------------------------GGGGGGTTSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEE
T ss_pred -------------------------------------hhhhhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCceEE
Confidence 1122233 89999999999999999999999999999999999
Q ss_pred EEeCCC---CccCCCCCchHHHHH--HHHHHHHHhcC
Q 005093 684 IVFPND---VHGIERPQSDFESFL--NIGLWFKKYCK 715 (715)
Q Consensus 684 ~~~~~~---~H~~~~~~~~~~~~~--~i~~wl~~~l~ 715 (715)
++++++ +|++.........+. .+++||.++.+
T Consensus 344 ~~~~~~~h~~h~~~~H~~~~~~~~~~~i~~wL~~~~r 380 (380)
T 3doh_A 344 TEYEKGFMEKHGWDPHGSWIPTYENQEAIEWLFEQSR 380 (380)
T ss_dssp EEECTTHHHHTTCCTTCTHHHHHTCHHHHHHHHTCC-
T ss_pred EEecCCcccCCCCCCchhHHHhcCCHHHHHHHHhhcC
Confidence 999999 555544445556666 89999987653
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=211.57 Aligned_cols=227 Identities=18% Similarity=0.181 Sum_probs=164.7
Q ss_pred ccCCCCceEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC
Q 005093 457 LTKGAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 532 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~---~~~~~~P~vv~iHGg~~~~~-~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~ 532 (715)
+...+|..+...+| |+.. ...++.|+||++|||++... ...|...+..|+++||.|+++|+||.+..+
T Consensus 24 ~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~~~~~------- 95 (283)
T 3bjr_A 24 KQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLLTDQQ------- 95 (283)
T ss_dssp EEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCTTTCS-------
T ss_pred EeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCCCccc-------
Confidence 34445666667778 7642 14567899999999875432 345677888999999999999999955431
Q ss_pred CCCCCccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhCCCc-------------eeEEEecCCcch
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK-------------FVAAAARNPLCN 596 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~~-------------~~~~v~~~~~~~ 596 (715)
........|+.++++++.+.. .++.++|+|+|||+||.+++.++.++|++ ++++++.+|..+
T Consensus 96 --~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~ 173 (283)
T 3bjr_A 96 --PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVLGYPVIS 173 (283)
T ss_dssp --SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSSEEEESCCCC
T ss_pred --cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccEEEEcCCccc
Confidence 011234778999999998753 36778999999999999999999999987 899999999875
Q ss_pred hhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHH
Q 005093 597 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 676 (715)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~ 676 (715)
+........ . ....+. ..+...++...+.++.+|+|+++|++|..+|++++..+++.+++
T Consensus 174 ~~~~~~~~~-------~-----~~~~~~--------~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~~~~~l~~ 233 (283)
T 3bjr_A 174 PLLGFPKDD-------A-----TLATWT--------PTPNELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALAT 233 (283)
T ss_dssp TTSBC--------------------CCC--------CCGGGGCGGGSCCTTCCCEEEEEESCCTTSCTHHHHHHHHHHHH
T ss_pred ccccccccc-------c-----hHHHHH--------HHhHhcCHHHhccCCCCCEEEEEcCCCCCCChHHHHHHHHHHHH
Confidence 321110000 0 000000 01234566667778899999999999999999999999999999
Q ss_pred cCCcEEEEEeCCCCccCCCCC------------chHHHHHHHHHHHHHh
Q 005093 677 KGVETKVIVFPNDVHGIERPQ------------SDFESFLNIGLWFKKY 713 (715)
Q Consensus 677 ~g~~~~~~~~~~~~H~~~~~~------------~~~~~~~~i~~wl~~~ 713 (715)
.+.+++++++++++|.+.... ...++.+.+++||+++
T Consensus 234 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 234 AKIPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp TTCCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 999999999999999765322 2246788999999874
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-23 Score=216.50 Aligned_cols=229 Identities=14% Similarity=0.078 Sum_probs=167.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|.+|.++++.|++ .++.|+||++||++... ..+......|+++||.|+++|+|| +|.+.. ........
T Consensus 135 dg~~i~~~l~~p~~---~~~~P~vl~~hG~~~~~--~~~~~~~~~l~~~G~~v~~~d~rG---~G~s~~---~~~~~~~~ 203 (386)
T 2jbw_A 135 DGIPMPVYVRIPEG---PGPHPAVIMLGGLESTK--EESFQMENLVLDRGMATATFDGPG---QGEMFE---YKRIAGDY 203 (386)
T ss_dssp TTEEEEEEEECCSS---SCCEEEEEEECCSSCCT--TTTHHHHHHHHHTTCEEEEECCTT---SGGGTT---TCCSCSCH
T ss_pred CCEEEEEEEEcCCC---CCCCCEEEEeCCCCccH--HHHHHHHHHHHhCCCEEEEECCCC---CCCCCC---CCCCCccH
Confidence 68999999999984 36789999999966543 233344788899999999999999 555411 11111222
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCC
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 620 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (715)
..++.+++++|.+++.++.++|+|+|+|+||++++.++.+ |++++++|+. |+.++....... +.. +.....
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~~~--~~~-----~~~~~~ 274 (386)
T 2jbw_A 204 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSDLDYWDLE--TPL-----TKESWK 274 (386)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGGGS--CHH-----HHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHHhc--cHH-----HHHHHH
Confidence 3568889999999887889999999999999999999998 8899999999 887754332100 000 000000
Q ss_pred CCCCCCCChhhH-HHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHH-HHcCCcEEEEEeCCCCccCCCCCc
Q 005093 621 DSFTESPSVEDL-TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL-REKGVETKVIVFPNDVHGIERPQS 698 (715)
Q Consensus 621 ~~~~~~~~~~~~-~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l-~~~g~~~~~~~~~~~~H~~~~~~~ 698 (715)
..+......... ..+...++...+.++++|+|+++|++|. +++.++.++++++ +. +++++++++++|.+ ...
T Consensus 275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~~~~~~~l~~~l~~~---~~~~~~~~~~gH~~--~~~ 348 (386)
T 2jbw_A 275 YVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE---HLNLVVEKDGDHCC--HNL 348 (386)
T ss_dssp HHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG---GEEEEEETTCCGGG--GGG
T ss_pred HHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CCHHHHHHHHHHhcCC---CcEEEEeCCCCcCC--ccc
Confidence 001111112333 5566778888889999999999999999 9999999998888 53 58999999999976 334
Q ss_pred hHHHHHHHHHHHHHhcC
Q 005093 699 DFESFLNIGLWFKKYCK 715 (715)
Q Consensus 699 ~~~~~~~i~~wl~~~l~ 715 (715)
..++.+.+.+||+++|+
T Consensus 349 ~~~~~~~i~~fl~~~l~ 365 (386)
T 2jbw_A 349 GIRPRLEMADWLYDVLV 365 (386)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 45789999999999874
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.9e-23 Score=218.52 Aligned_cols=231 Identities=16% Similarity=0.164 Sum_probs=163.2
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhh
Q 005093 464 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 543 (715)
Q Consensus 464 ~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d 543 (715)
.+.++++.|+ ..++.|+||++||++.. .+...+..|+++||.|+++|+||.++. +........+|
T Consensus 144 ~l~~~l~~P~---~~~~~P~Vv~~hG~~~~----~~~~~a~~La~~Gy~V~a~D~rG~g~~--------~~~~~~~~~~d 208 (422)
T 3k2i_A 144 RVRATLFLPP---GPGPFPGIIDIFGIGGG----LLEYRASLLAGHGFATLALAYYNFEDL--------PNNMDNISLEY 208 (422)
T ss_dssp TEEEEEEECS---SSCCBCEEEEECCTTCS----CCCHHHHHHHTTTCEEEEEECSSSTTS--------CSSCSCEETHH
T ss_pred cEEEEEEcCC---CCCCcCEEEEEcCCCcc----hhHHHHHHHHhCCCEEEEEccCCCCCC--------CCCcccCCHHH
Confidence 6899999997 45678999999997654 234457889999999999999995432 22333456899
Q ss_pred HHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc---CCCCCCceee---eccCC
Q 005093 544 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG---TTDIPDWCYV---ESYGS 617 (715)
Q Consensus 544 ~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~ 617 (715)
+.++++++.++..++.++|+|+||||||.+++.++.++|+ ++++|+++|......... ....+..... .....
T Consensus 209 ~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (422)
T 3k2i_A 209 FEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAF 287 (422)
T ss_dssp HHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGCEECT
T ss_pred HHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhcccCc
Confidence 9999999999887888999999999999999999999997 999999888753211000 0000000000 00000
Q ss_pred CC---CCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHH-HHHHHHHHHcCCc-EEEEEeCCCCcc
Q 005093 618 KG---KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVE-TKVIVFPNDVHG 692 (715)
Q Consensus 618 ~~---~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~~~~l~~~g~~-~~~~~~~~~~H~ 692 (715)
.. .......+ ......+....+.++++|+|+++|++|.++|.... ..+.+.+++.+.+ +++++++++||.
T Consensus 288 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~~gagH~ 362 (422)
T 3k2i_A 288 SGLVDIVDIRNAL-----VGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHY 362 (422)
T ss_dssp TSCEECTTCBCCC-----TTGGGSTTBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHHTTCCCCEEEEETTCCSC
T ss_pred chhHHHHHHHhhh-----hhcccccccccHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEECCCCCE
Confidence 00 00000001 00111223344678899999999999999998866 6888999999988 999999999999
Q ss_pred CCCC---------------------------CchHHHHHHHHHHHHHhcC
Q 005093 693 IERP---------------------------QSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 693 ~~~~---------------------------~~~~~~~~~i~~wl~~~l~ 715 (715)
+..+ +...++++.+++||+++|+
T Consensus 363 ~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~ 412 (422)
T 3k2i_A 363 IEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLG 412 (422)
T ss_dssp CCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7322 3456789999999999974
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-22 Score=210.43 Aligned_cols=249 Identities=17% Similarity=0.197 Sum_probs=188.3
Q ss_pred EEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccccccc
Q 005093 16 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVY 94 (715)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 94 (715)
..|+++|+++. ...+|+... +.+..++|||||++|||....+ +...++..+ .+++...+.......
T Consensus 159 ~~i~i~d~~g~--~~~~l~~~~-----~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~~l~~~~~~~----- 225 (415)
T 2hqs_A 159 YELRVSDYDGY--NQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN----- 225 (415)
T ss_dssp EEEEEEETTSC--SCEEEEEES-----SCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEEEEECCSSCE-----
T ss_pred ceEEEEcCCCC--CCEEEeCCC-----CcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEEEeecCCCcc-----
Confidence 78999887643 445555444 6689999999999999998654 445677666 566666555433333
Q ss_pred CCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce
Q 005093 95 ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV 174 (715)
Q Consensus 95 ~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 174 (715)
..++|||||++|+|..... +...||+||+++++.
T Consensus 226 -----~~~~~spdg~~la~~~~~~-----------------------------------------g~~~i~~~d~~~~~~ 259 (415)
T 2hqs_A 226 -----GAPAFSPDGSKLAFALSKT-----------------------------------------GSLNLYVMDLASGQI 259 (415)
T ss_dssp -----EEEEECTTSSEEEEEECTT-----------------------------------------SSCEEEEEETTTCCE
T ss_pred -----cCEEEcCCCCEEEEEEecC-----------------------------------------CCceEEEEECCCCCE
Confidence 7899999999999976432 236799999999998
Q ss_pred EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce
Q 005093 175 QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV 254 (715)
Q Consensus 175 ~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (715)
+.+ +.....+..+.|||||+. |+|.+... ...+||.+|+ .+++.+
T Consensus 260 ~~l--~~~~~~~~~~~~spdg~~----l~~~s~~~------------g~~~i~~~d~-----------------~~~~~~ 304 (415)
T 2hqs_A 260 RQV--TDGRSNNTEPTWFPDSQN----LAFTSDQA------------GRPQVYKVNI-----------------NGGAPQ 304 (415)
T ss_dssp EEC--CCCSSCEEEEEECTTSSE----EEEEECTT------------SSCEEEEEET-----------------TSSCCE
T ss_pred EeC--cCCCCcccceEECCCCCE----EEEEECCC------------CCcEEEEEEC-----------------CCCCEE
Confidence 888 444456778999999999 99987422 2247999997 777777
Q ss_pred ecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCC
Q 005093 255 NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 334 (715)
Q Consensus 255 ~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~ 334 (715)
.++........++|||||++|++.+... +...|+++|+.+++.+.++... .
T Consensus 305 ~l~~~~~~~~~~~~spdG~~l~~~~~~~--------g~~~i~~~d~~~~~~~~l~~~~---------------------~ 355 (415)
T 2hqs_A 305 RITWEGSQNQDADVSSDGKFMVMVSSNG--------GQQHIAKQDLATGGVQVLSSTF---------------------L 355 (415)
T ss_dssp ECCCSSSEEEEEEECTTSSEEEEEEECS--------SCEEEEEEETTTCCEEECCCSS---------------------S
T ss_pred EEecCCCcccCeEECCCCCEEEEEECcC--------CceEEEEEECCCCCEEEecCCC---------------------C
Confidence 8877666788899999999999998763 2357999999887654443221 1
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeec
Q 005093 335 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 387 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~ 387 (715)
...+.|+|||+.|++.+...+...||.+|++++..++++...+.+....|+|.
T Consensus 356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 356 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccc
Confidence 34567999999999988888888999999998888888877765666677764
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=215.58 Aligned_cols=231 Identities=19% Similarity=0.249 Sum_probs=159.9
Q ss_pred cccCCCCceEEEEEEe-cCCC--------------------CCCCCCcEEEEEcCCCCCCCCc---cchHHHHHHHhC-C
Q 005093 456 NLTKGAQKPFEAIFVS-SSHK--------------------KDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSV-G 510 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~-P~~~--------------------~~~~~~P~vv~iHGg~~~~~~~---~~~~~~~~la~~-G 510 (715)
++...+| +.+.+|. |... ...++.|+||++|||++..... .|...+..|+++ |
T Consensus 68 ~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~~~~la~~~g 145 (365)
T 3ebl_A 68 IIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSK 145 (365)
T ss_dssp EEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHT
T ss_pred EecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHHHHHHHHHCC
Confidence 3445566 6667787 8642 2346789999999988754433 256677888775 9
Q ss_pred cEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcC----CCCCc-eEEEEEeChhHHHHHHHHhhCCC--
Q 005093 511 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG----LANPS-KVTVVGGSHGGFLTTHLIGQAPD-- 583 (715)
Q Consensus 511 ~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~----~~d~~-~i~l~G~S~GG~~a~~~a~~~p~-- 583 (715)
|.|+++|||+++++. ....++|+.++++|+.++. .+|++ +|+|+|+|+||++++.++.+.++
T Consensus 146 ~~Vv~~dyR~~p~~~-----------~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~~a~~~~~~~ 214 (365)
T 3ebl_A 146 GVVVSVNYRRAPEHR-----------YPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEG 214 (365)
T ss_dssp SEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHHHHHHHHHTT
T ss_pred CEEEEeeCCCCCCCC-----------CcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHHHHHHHHhcC
Confidence 999999999865432 2234789999999999764 57898 99999999999999999987655
Q ss_pred -ceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHH-------------HHhcCchh-hccCCC
Q 005093 584 -KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-------------FHSKSPIS-HISKVK 648 (715)
Q Consensus 584 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~sp~~-~~~~i~ 648 (715)
+++++|+++|+++........ ..... ..+ ........ ....+|+. ....++
T Consensus 215 ~~~~g~vl~~p~~~~~~~~~~~--------~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 280 (365)
T 3ebl_A 215 VKVCGNILLNAMFGGTERTESE--------RRLDG---KYF---VTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLG 280 (365)
T ss_dssp CCCCEEEEESCCCCCSSCCHHH--------HHHTT---TSS---CCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTCCCCT
T ss_pred CceeeEEEEccccCCCcCChhh--------hhcCC---Ccc---cCHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhc
Confidence 799999999987643111000 00000 000 00000000 01122322 223343
Q ss_pred ----CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCC---CCCchHHHHHHHHHHHHHhcC
Q 005093 649 ----TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE---RPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 649 ----~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~wl~~~l~ 715 (715)
+|+||+||+.|..+ .++.+++++|+++|++++++++++++|++. ..+...++++.+.+||+++++
T Consensus 281 ~~~~pP~Li~~G~~D~l~--~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~ 352 (365)
T 3ebl_A 281 GLPFAKSLIIVSGLDLTC--DRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLY 352 (365)
T ss_dssp TSCCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCCCEEEEEcCcccch--hHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhh
Confidence 68999999999765 567899999999999999999999999876 234456789999999999875
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=195.97 Aligned_cols=201 Identities=20% Similarity=0.261 Sum_probs=157.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCC--CCCC-
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP--GKVG- 537 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~--~~~~- 537 (715)
+|.++.++++.|++ +.|+||++||++.......+...++.|+++||.|+++|+|| +|.+...... ....
T Consensus 20 ~g~~l~~~~~~p~~-----~~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~~~~~~~~~ 91 (223)
T 2o2g_A 20 GEVKLKGNLVIPNG-----ATGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLT---QEEEEIDLRTRHLRFDI 91 (223)
T ss_dssp TTEEEEEEEECCTT-----CCEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSC---HHHHHHHHHHCSSTTCH
T ss_pred CCeEEEEEEecCCC-----CceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCC---cCCCCccchhhcccCcH
Confidence 78899999999863 68999999997765433345567888999999999999998 5554322111 0011
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCC
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 617 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (715)
....+|+.++++++..+..+|.++++++|||+||.+++.++.++|++++++|+++|..+..
T Consensus 92 ~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~------------------- 152 (223)
T 2o2g_A 92 GLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA------------------- 152 (223)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGC-------------------
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcC-------------------
Confidence 1226788899999998877888999999999999999999999999999999999864320
Q ss_pred CCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCC
Q 005093 618 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 697 (715)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 697 (715)
...+.++++|+|+++|++|..+|.. ..+.+.+.+.+++++++++++|.+..++
T Consensus 153 -----------------------~~~~~~~~~P~l~i~g~~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~H~~~~~~ 205 (223)
T 2o2g_A 153 -----------------------PSALPHVKAPTLLIVGGYDLPVIAM----NEDALEQLQTSKRLVIIPRASHLFEEPG 205 (223)
T ss_dssp -----------------------TTTGGGCCSCEEEEEETTCHHHHHH----HHHHHHHCCSSEEEEEETTCCTTCCSTT
T ss_pred -----------------------HHHHhcCCCCEEEEEccccCCCCHH----HHHHHHhhCCCeEEEEeCCCCcccCChH
Confidence 0234567799999999999988632 3445566677899999999999977666
Q ss_pred chHHHHHHHHHHHHHhcC
Q 005093 698 SDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 698 ~~~~~~~~i~~wl~~~l~ 715 (715)
...++.+.+.+||+++|+
T Consensus 206 ~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 206 ALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 667899999999999986
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=201.72 Aligned_cols=221 Identities=19% Similarity=0.213 Sum_probs=149.0
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
+..+.||++||.+.+ ...|..+++.|+++||.|+++|+|| ||.+........+ ...++|+.+++++|.+.
T Consensus 49 G~~~~VlllHG~~~s--~~~~~~la~~La~~Gy~Via~Dl~G---hG~S~~~~~~~~~-~~~~~d~~~~~~~l~~~---- 118 (281)
T 4fbl_A 49 GSRIGVLVSHGFTGS--PQSMRFLAEGFARAGYTVATPRLTG---HGTTPAEMAASTA-SDWTADIVAAMRWLEER---- 118 (281)
T ss_dssp CSSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTT---SSSCHHHHHTCCH-HHHHHHHHHHHHHHHHH----
T ss_pred CCCceEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEECCCC---CCCCCccccCCCH-HHHHHHHHHHHHHHHhC----
Confidence 345679999995443 4578889999999999999999999 6655432111111 11267888888888765
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh-----ccCCCCCCceeeeccCC----CCCCCCCCC-CC
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-----VGTTDIPDWCYVESYGS----KGKDSFTES-PS 628 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~ 628 (715)
.++++|+||||||.+++.++.++|++++++|+++|...+... ......... ...... ......... ..
T Consensus 119 ~~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
T 4fbl_A 119 CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAE--LPGIGSDIKAEGVKELAYPVTP 196 (281)
T ss_dssp CSEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSE--EECCCCCCSSTTCCCCCCSEEE
T ss_pred CCeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHh--hhcchhhhhhHHHHHhhhccCc
Confidence 368999999999999999999999999999999987643211 000001000 000000 000000000 00
Q ss_pred hhhHHHHHhc--CchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHH
Q 005093 629 VEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 706 (715)
Q Consensus 629 ~~~~~~~~~~--sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i 706 (715)
......+... .....+.++++|+|+++|++|.++|++.+..+++.+. +.++++++++++||.+..+...+.+.+.|
T Consensus 197 ~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~l~--~~~~~l~~~~~~gH~~~~e~~~e~v~~~i 274 (281)
T 4fbl_A 197 VPAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIG--STEKELLWLENSYHVATLDNDKELILERS 274 (281)
T ss_dssp GGGHHHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSCTHHHHHHHHHCC--CSSEEEEEESSCCSCGGGSTTHHHHHHHH
T ss_pred hHHHHHHHHhhhhccccccccCCCEEEEEeCCCCCcCHHHHHHHHHhCC--CCCcEEEEECCCCCcCccccCHHHHHHHH
Confidence 1111111110 1123567899999999999999999999988888764 35678999999999877666667889999
Q ss_pred HHHHHHh
Q 005093 707 GLWFKKY 713 (715)
Q Consensus 707 ~~wl~~~ 713 (715)
++||++|
T Consensus 275 ~~FL~~H 281 (281)
T 4fbl_A 275 LAFIRKH 281 (281)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 9999986
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-23 Score=204.94 Aligned_cols=240 Identities=11% Similarity=0.066 Sum_probs=163.9
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
..+|.+++++++.|. +++.|+||++||++.......|...+..|+++||.|+++|+||. |.+...... ....
T Consensus 28 ~~~g~~l~~~~~~p~----~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~---G~s~~~~~~-~~~~ 99 (270)
T 3pfb_A 28 ERDGLQLVGTREEPF----GEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGH---GDSDGKFEN-MTVL 99 (270)
T ss_dssp EETTEEEEEEEEECS----SSSEEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTS---TTSSSCGGG-CCHH
T ss_pred ccCCEEEEEEEEcCC----CCCCCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccccc---cCCCCCCCc-cCHH
Confidence 347899999999885 34589999999977664445577788899999999999999994 433211000 0111
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCC
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 618 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (715)
..++|+.++++++.++. +.++++|+|||+||.+++.++.++|++++++|+++|.................+.......
T Consensus 100 ~~~~d~~~~i~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (270)
T 3pfb_A 100 NEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPD 177 (270)
T ss_dssp HHHHHHHHHHHHHHTCT--TEEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHTEETTEECCTTSCCS
T ss_pred HHHHhHHHHHHHHHhCc--CCCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhhhhhccccCcccccc
Confidence 23678888899988764 3469999999999999999999999999999999998765432111000000000000000
Q ss_pred CCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCc
Q 005093 619 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 698 (715)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 698 (715)
................+...++...+.++++|+|+++|++|..+|.+.+..+.+.+ ..++++++++++|.+. .+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~-~~~ 252 (270)
T 3pfb_A 178 RLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIY----QNSTLHLIEGADHCFS-DSY 252 (270)
T ss_dssp EEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSCTHHHHHHHHHC----SSEEEEEETTCCTTCC-THH
T ss_pred cccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCCHHHHHHHHHhC----CCCeEEEcCCCCcccC-ccc
Confidence 00000000011223344455666778889999999999999999998888777664 3589999999999876 444
Q ss_pred hHHHHHHHHHHHHHh
Q 005093 699 DFESFLNIGLWFKKY 713 (715)
Q Consensus 699 ~~~~~~~i~~wl~~~ 713 (715)
..++.+.+.+||+++
T Consensus 253 ~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 253 QKNAVNLTTDFLQNN 267 (270)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHhhc
Confidence 567888999999765
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=198.35 Aligned_cols=209 Identities=18% Similarity=0.153 Sum_probs=158.7
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhc----
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS---- 531 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~---- 531 (715)
++...+|.++.++++.|+ .++.|+||++||.+.. ...+...+..|+++||.|+++|+||.+..+......
T Consensus 7 ~~~~~~g~~l~~~~~~p~----~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~ 80 (236)
T 1zi8_A 7 SIQSYDGHTFGALVGSPA----KAPAPVIVIAQDIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQ 80 (236)
T ss_dssp CEECTTSCEECEEEECCS----SCSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTCHHH
T ss_pred EEecCCCCeEEEEEECCC----CCCCCEEEEEcCCCCC--CHHHHHHHHHHHhCCcEEEeccccccCCCcccccccchhh
Confidence 445568889999999986 3578999999996554 346777888999999999999999855433210000
Q ss_pred -------CCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC
Q 005093 532 -------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 604 (715)
Q Consensus 532 -------~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~ 604 (715)
..........+|+.++++++.++..++ ++|+++|||+||.+++.++.++| ++++++.+|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~------- 150 (236)
T 1zi8_A 81 REQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE------- 150 (236)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG-------
T ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc-------
Confidence 000011223678889999998876444 79999999999999999999988 8888877763210
Q ss_pred CCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEE
Q 005093 605 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 684 (715)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (715)
++...+.++++|+|+++|++|..+|.+.+..+++.+++.+ +++++
T Consensus 151 ----------------------------------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~ 195 (236)
T 1zi8_A 151 ----------------------------------KQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVH 195 (236)
T ss_dssp ----------------------------------GCGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTTCT-TEEEE
T ss_pred ----------------------------------cchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHHHhCC-CceEE
Confidence 1234456778999999999999999999999999987655 89999
Q ss_pred EeCCCCccCCCCCc-------hHHHHHHHHHHHHHhcC
Q 005093 685 VFPNDVHGIERPQS-------DFESFLNIGLWFKKYCK 715 (715)
Q Consensus 685 ~~~~~~H~~~~~~~-------~~~~~~~i~~wl~~~l~ 715 (715)
++++++|.+..... ..++++.+.+||+++++
T Consensus 196 ~~~~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 233 (236)
T 1zi8_A 196 WYEEAGHSFARTGSSGYVASAAALANERTLDFLVPLQS 233 (236)
T ss_dssp EETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC
T ss_pred EECCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcC
Confidence 99999998775432 34688999999999875
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-22 Score=194.61 Aligned_cols=203 Identities=17% Similarity=0.231 Sum_probs=157.6
Q ss_pred ccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCC
Q 005093 457 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 533 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~---~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~ 533 (715)
+...+| ++.++++.|. .++.|+||++||.+... ....+...+..|+++||.|+++|+||. |.+.. .
T Consensus 28 ~~~~~g-~l~~~~~~p~----~~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~---G~s~~---~ 96 (249)
T 2i3d_A 28 FNGPAG-RLEGRYQPSK----EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSI---GRSQG---E 96 (249)
T ss_dssp EEETTE-EEEEEEECCS----STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTS---TTCCS---C
T ss_pred EECCCc-eEEEEEEcCC----CCCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCCC---CCCCC---C
Confidence 344466 8999998885 35679999999953221 123456778889999999999999994 43321 1
Q ss_pred CCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeee
Q 005093 534 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 613 (715)
Q Consensus 534 ~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 613 (715)
........+|+.++++++.++. .+.++++++|||+||.+++.++.++|+ ++++|+++|..+...
T Consensus 97 ~~~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~-------------- 160 (249)
T 2i3d_A 97 FDHGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD-------------- 160 (249)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC--------------
T ss_pred CCCccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh--------------
Confidence 1122334689999999998885 477799999999999999999999998 999999998754210
Q ss_pred ccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHH-cCCcEEEEEeCCCCcc
Q 005093 614 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE-KGVETKVIVFPNDVHG 692 (715)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~-~g~~~~~~~~~~~~H~ 692 (715)
...+.++++|+|+++|++|..+|.+.+..+++.+.. .+.+++++++++++|.
T Consensus 161 ---------------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~H~ 213 (249)
T 2i3d_A 161 ---------------------------FSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHF 213 (249)
T ss_dssp ---------------------------CTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTT
T ss_pred ---------------------------hhhhcccCCCEEEEEcCCCCCCCHHHHHHHHHHHhhccCCceeEEEECCCCcc
Confidence 122456789999999999999999999999998875 4557999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHHhcC
Q 005093 693 IERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 693 ~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
+. ....++.+.+.+||+++++
T Consensus 214 ~~--~~~~~~~~~i~~fl~~~l~ 234 (249)
T 2i3d_A 214 FN--GKVDELMGECEDYLDRRLN 234 (249)
T ss_dssp CT--TCHHHHHHHHHHHHHHHHT
T ss_pred cc--cCHHHHHHHHHHHHHHhcC
Confidence 76 3566889999999998763
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=217.43 Aligned_cols=234 Identities=14% Similarity=0.166 Sum_probs=160.9
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhh
Q 005093 464 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 543 (715)
Q Consensus 464 ~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d 543 (715)
.+.+++|.|+ ..++.|+||++||++... +...+..|+++||.|+++|+||.++.. ........+|
T Consensus 160 ~l~~~l~~P~---~~~~~P~Vv~lhG~~~~~----~~~~a~~La~~Gy~Vla~D~rG~~~~~--------~~~~~~~~~d 224 (446)
T 3hlk_A 160 RVRGTLFLPP---EPGPFPGIVDMFGTGGGL----LEYRASLLAGKGFAVMALAYYNYEDLP--------KTMETLHLEY 224 (446)
T ss_dssp TEEEEEEECS---SSCCBCEEEEECCSSCSC----CCHHHHHHHTTTCEEEEECCSSSTTSC--------SCCSEEEHHH
T ss_pred eEEEEEEeCC---CCCCCCEEEEECCCCcch----hhHHHHHHHhCCCEEEEeccCCCCCCC--------cchhhCCHHH
Confidence 6899999997 456789999999976542 234578899999999999999954432 2233345899
Q ss_pred HHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc---CCCCCCceee---eccCC
Q 005093 544 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG---TTDIPDWCYV---ESYGS 617 (715)
Q Consensus 544 ~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~ 617 (715)
+.++++++.++..+|.++|+|+||||||.+++.++.++|+ ++++|+++|......... ....+...+. .....
T Consensus 225 ~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (446)
T 3hlk_A 225 FEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTK 303 (446)
T ss_dssp HHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGCEECS
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhcccccc
Confidence 9999999999988888999999999999999999999987 999999888653211000 0000000000 00000
Q ss_pred CCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHH-HHHHHHHHHcCCc-EEEEEeCCCCccCCC
Q 005093 618 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVE-TKVIVFPNDVHGIER 695 (715)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~~~~l~~~g~~-~~~~~~~~~~H~~~~ 695 (715)
.....+... ...............+.++++|+|+++|++|.++|.... ..+++.+++.+.+ +++++|++++|.+..
T Consensus 304 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~pgagH~~~~ 381 (446)
T 3hlk_A 304 DGYADIVDV--LNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYIEP 381 (446)
T ss_dssp SSCEECTTC--BCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSCHHHHHHHHHHHHHHTTCCCCEEEEETTBCSCCCS
T ss_pred chHHHHHHH--HhchhhccccccccCHHHCCCCEEEEEeCCCCCcChHHHHHHHHHHHHHcCCCCcEEEEECCCCCeECC
Confidence 000000000 000000011112233677889999999999999998554 6889999999988 899999999998831
Q ss_pred ---------------------------CCchHHHHHHHHHHHHHhcC
Q 005093 696 ---------------------------PQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 696 ---------------------------~~~~~~~~~~i~~wl~~~l~ 715 (715)
.+...++++++++||+++|+
T Consensus 382 p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~ 428 (446)
T 3hlk_A 382 PYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLG 428 (446)
T ss_dssp TTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 11256789999999999874
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-22 Score=205.03 Aligned_cols=227 Identities=15% Similarity=0.208 Sum_probs=162.6
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLP 533 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~~~~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~ 533 (715)
++...+| ++.+++|.|++ ...|+||++|||++... ...+...+..|++ .||.|+++|||+++++.
T Consensus 67 ~~~~~~g-~i~~~~~~p~~----~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~~-------- 133 (326)
T 3ga7_A 67 AVPTPYG-DVTTRLYSPQP----TSQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQAR-------- 133 (326)
T ss_dssp EECCTTS-CEEEEEEESSS----SCSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTSC--------
T ss_pred EeecCCC-CeEEEEEeCCC----CCCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCCC--------
Confidence 4455566 89999999973 23499999999885443 3456677888877 89999999999865531
Q ss_pred CCCCccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhCCCc------eeEEEecCCcchhhhhccCC
Q 005093 534 GKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK------FVAAAARNPLCNLALMVGTT 604 (715)
Q Consensus 534 ~~~~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~~------~~~~v~~~~~~~~~~~~~~~ 604 (715)
....++|+.++++|+.++. .+|+++|+|+|+|+||.+++.++.+++++ ++++++.+|+.+.......
T Consensus 134 ---~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~- 209 (326)
T 3ga7_A 134 ---YPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYGLQDSVSR- 209 (326)
T ss_dssp ---TTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCCSCSCCHHH-
T ss_pred ---CCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEeccccccCCChhH-
Confidence 2234789999999999863 47889999999999999999999877654 8999999997654211000
Q ss_pred CCCCceeeeccCCCCCCCCCCCCChhhHHHHH---------hcCch-----hhccCCCCcEEEEeeCCCCcCCchHHHHH
Q 005093 605 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFH---------SKSPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQY 670 (715)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~sp~-----~~~~~i~~P~Lii~G~~D~~v~~~~~~~~ 670 (715)
..+... .. .........+. ..+|. ..+.+..+|+||+||+.|.++ .++..+
T Consensus 210 --------~~~~~~----~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~--~~~~~~ 274 (326)
T 3ga7_A 210 --------RLFGGA----WD-GLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLI--DDSRLL 274 (326)
T ss_dssp --------HHCCCT----TT-TCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSSCCCCEEEEEETTCTTH--HHHHHH
T ss_pred --------hhhcCC----CC-CCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhcCCCCEEEEecCcCcCH--HHHHHH
Confidence 000000 00 00011111111 11222 123345679999999999998 588999
Q ss_pred HHHHHHcCCcEEEEEeCCCCccCCCCC----chHHHHHHHHHHHHHhc
Q 005093 671 ARALREKGVETKVIVFPNDVHGIERPQ----SDFESFLNIGLWFKKYC 714 (715)
Q Consensus 671 ~~~l~~~g~~~~~~~~~~~~H~~~~~~----~~~~~~~~i~~wl~~~l 714 (715)
+++++++|++++++++++++|++.... ...++++.+.+||+++|
T Consensus 275 ~~~l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l 322 (326)
T 3ga7_A 275 HQTLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARM 322 (326)
T ss_dssp HHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999986432 34678999999999886
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.8e-23 Score=211.37 Aligned_cols=242 Identities=14% Similarity=0.174 Sum_probs=167.3
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhh-hcCC-
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-QSLP- 533 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~-~~~~- 533 (715)
++.+.+|.++.++++.|++. .++.|+||++||++.... +......|+++||.|+++|+||.+.++.... ...+
T Consensus 72 ~~~~~dg~~i~~~~~~P~~~--~~~~p~vv~~HG~g~~~~---~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~p~ 146 (337)
T 1vlq_A 72 TFSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPE 146 (337)
T ss_dssp EEECGGGCEEEEEEEEECCS--CSSEEEEEECCCTTCCCC---CGGGGCHHHHTTCEEEEECCTTCCCSSSCCCCCBCCS
T ss_pred EEEcCCCCEEEEEEEecCCC--CCCccEEEEEcCCCCCCC---CchhhcchhhCCCEEEEecCCCCCCcccCCCCccccc
Confidence 44556788999999999742 567899999999776532 2233456789999999999999764432100 0000
Q ss_pred ----CCC--------C-------ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCc
Q 005093 534 ----GKV--------G-------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594 (715)
Q Consensus 534 ----~~~--------~-------~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 594 (715)
..+ . ...++|+.++++++.++..+|.++|+|+|+|+||.+++.++.++| +++++++.+|.
T Consensus 147 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p-~v~~~vl~~p~ 225 (337)
T 1vlq_A 147 GPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KAKALLCDVPF 225 (337)
T ss_dssp SSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SCCEEEEESCC
T ss_pred ccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-CccEEEECCCc
Confidence 000 0 134789999999999988788899999999999999999999988 58999988885
Q ss_pred ch-hhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHH
Q 005093 595 CN-LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 673 (715)
Q Consensus 595 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (715)
.. +...........+.....+.. . ...........+...+|...+.++++|+|+++|+.|.++|++++.+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~p~~~~~~~~~~ 300 (337)
T 1vlq_A 226 LCHFRRAVQLVDTHPYAEITNFLK----T-HRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNY 300 (337)
T ss_dssp SCCHHHHHHHCCCTTHHHHHHHHH----H-CTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred ccCHHHHHhcCCCcchHHHHHHHH----h-CchhHHHHHHhhhhccHHHHHHHcCCCEEEEeeCCCCCCCchhHHHHHHh
Confidence 43 222211111111100000000 0 00001122233445678778889999999999999999999998888887
Q ss_pred HHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 674 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 674 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
++. +++++++++++|.+. ..+..+.+.+||+++|+
T Consensus 301 l~~---~~~~~~~~~~gH~~~----~~~~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 301 YAG---PKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLFE 335 (337)
T ss_dssp CCS---SEEEEEETTCCTTTT----HHHHHHHHHHHHHHHHC
T ss_pred cCC---CcEEEEcCCCCCCCc----chhhHHHHHHHHHHHHh
Confidence 753 589999999999863 23567899999998874
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=205.96 Aligned_cols=224 Identities=17% Similarity=0.269 Sum_probs=158.4
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCCccch
Q 005093 464 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541 (715)
Q Consensus 464 ~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~-~~~~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~ 541 (715)
.+.+++|.|+ ..++.|+||++|||++.... ..+...+..|++ .||.|+++|||+++++. ....+
T Consensus 66 ~i~~~~~~p~---~~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~-----------~~~~~ 131 (322)
T 3fak_A 66 GCAAEWVRAP---GCQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHP-----------FPAAV 131 (322)
T ss_dssp TEEEEEEECT---TCCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSC-----------TTHHH
T ss_pred CeEEEEEeCC---CCCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCC-----------CCcHH
Confidence 4788899997 34678999999998865433 345556667765 69999999999865531 23357
Q ss_pred hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCc----eeEEEecCCcchhhhhccCCCCCCceeeeccCC
Q 005093 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 617 (715)
Q Consensus 542 ~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (715)
+|+.++++|+.++ .+|+++|+|+|+|+||++++.++.+.+++ ++++++++|+.+....... + .. ...
T Consensus 132 ~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~-----~--~~-~~~ 202 (322)
T 3fak_A 132 EDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDS-----F--KT-RAE 202 (322)
T ss_dssp HHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTH-----H--HH-TTT
T ss_pred HHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcC-----H--HH-hCc
Confidence 9999999999998 57899999999999999999999876654 9999999998875321100 0 00 000
Q ss_pred CCCCCCCCCCChh-hHHHH--------HhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC
Q 005093 618 KGKDSFTESPSVE-DLTRF--------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 688 (715)
Q Consensus 618 ~~~~~~~~~~~~~-~~~~~--------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (715)
...+....... ....+ ...+|+...-...+|+||++|+.|.++ .++..++++++++|++++++++++
T Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~~~--~~~~~~~~~l~~~g~~~~~~~~~g 278 (322)
T 3fak_A 203 --ADPMVAPGGINKMAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVLL--DDSIKLDAKAKADGVKSTLEIWDD 278 (322)
T ss_dssp --TCCSCCSSHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETT
T ss_pred --cCcccCHHHHHHHHHHhcCCCCCCCcccCCCcccccCCChHhEEEcCcCccH--HHHHHHHHHHHHcCCCEEEEEeCC
Confidence 00000000000 00111 123444222223369999999999875 688899999999999999999999
Q ss_pred CCccCCC----CCchHHHHHHHHHHHHHhc
Q 005093 689 DVHGIER----PQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 689 ~~H~~~~----~~~~~~~~~~i~~wl~~~l 714 (715)
++|++.. .....++++.+.+||+++|
T Consensus 279 ~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 308 (322)
T 3fak_A 279 MIHVWHAFHPMLPEGKQAIVRVGEFMREQW 308 (322)
T ss_dssp CCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 9998763 2334678899999999876
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=204.78 Aligned_cols=226 Identities=16% Similarity=0.208 Sum_probs=163.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|.++.++++.|. +.|+||++||++.. ...|...+..|+++||.|+++|+|| +|.+...... ......
T Consensus 14 ~g~~l~~~~~~p~------~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G---~g~s~~~~~~-~~~~~~ 81 (290)
T 3ksr_A 14 GQDELSGTLLTPT------GMPGVLFVHGWGGS--QHHSLVRAREAVGLGCICMTFDLRG---HEGYASMRQS-VTRAQN 81 (290)
T ss_dssp TTEEEEEEEEEEE------SEEEEEEECCTTCC--TTTTHHHHHHHHTTTCEEECCCCTT---SGGGGGGTTT-CBHHHH
T ss_pred CCeEEEEEEecCC------CCcEEEEeCCCCCC--cCcHHHHHHHHHHCCCEEEEeecCC---CCCCCCCccc-ccHHHH
Confidence 6789999999985 68999999997655 4567788899999999999999999 5544322111 111223
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeec-cC-CC
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES-YG-SK 618 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 618 (715)
.+|+.++++++.+++.+|.++|+|+|||+||.+++.++.++| ++++++++|...... .|..... +. ..
T Consensus 82 ~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~--------~~~~~~~~~~~~~ 151 (290)
T 3ksr_A 82 LDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDA--------HWDQPKVSLNADP 151 (290)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSS--------CTTSBHHHHHHST
T ss_pred HHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhh--------hhhcccccccCCh
Confidence 689999999999887788899999999999999999999887 778888887653211 0100000 00 00
Q ss_pred CCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCc
Q 005093 619 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 698 (715)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 698 (715)
....+..... .....++...+.++++|+|+++|+.|..++.+.+..+++.+...+ +++++++++++|.+.....
T Consensus 152 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~~~ 225 (290)
T 3ksr_A 152 DLMDYRRRAL-----APGDNLALAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNAR-SLTSRVIAGADHALSVKEH 225 (290)
T ss_dssp THHHHTTSCC-----CGGGCHHHHHHHHCCSEEEEEEETTCSSSCHHHHHHHHHHTTTSS-EEEEEEETTCCTTCCSHHH
T ss_pred hhhhhhhhhh-----hhccccHHHHHHhcCCCeEEEEecCCcccChHHHHHHHHHhccCC-CceEEEcCCCCCCCCcchH
Confidence 0000000000 011122334566788999999999999999999999999887655 7899999999998876656
Q ss_pred hHHHHHHHHHHHHHhc
Q 005093 699 DFESFLNIGLWFKKYC 714 (715)
Q Consensus 699 ~~~~~~~i~~wl~~~l 714 (715)
...+.+.+.+||++++
T Consensus 226 ~~~~~~~i~~fl~~~~ 241 (290)
T 3ksr_A 226 QQEYTRALIDWLTEMV 241 (290)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6788899999998875
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=209.46 Aligned_cols=241 Identities=14% Similarity=0.140 Sum_probs=164.6
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCC-
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG- 534 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~- 534 (715)
++...+|.++.++++.|++ .++.|+||++||++.... .|.... .++++||.|+++|+||.++++.........
T Consensus 86 ~~~~~~g~~l~~~~~~P~~---~~~~p~vv~~HG~g~~~~--~~~~~~-~~~~~G~~v~~~D~rG~g~s~~~~~~~~~~~ 159 (346)
T 3fcy_A 86 YFTGVRGARIHAKYIKPKT---EGKHPALIRFHGYSSNSG--DWNDKL-NYVAAGFTVVAMDVRGQGGQSQDVGGVTGNT 159 (346)
T ss_dssp EEECGGGCEEEEEEEEESC---SSCEEEEEEECCTTCCSC--CSGGGH-HHHTTTCEEEEECCTTSSSSCCCCCCCSSCC
T ss_pred EEEcCCCCEEEEEEEecCC---CCCcCEEEEECCCCCCCC--Chhhhh-HHHhCCcEEEEEcCCCCCCCCCCCcccCCCC
Confidence 5566688999999999973 577899999999776543 343333 567999999999999966543322100000
Q ss_pred -----------CCC----ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchh-h
Q 005093 535 -----------KVG----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-A 598 (715)
Q Consensus 535 -----------~~~----~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~-~ 598 (715)
... ...++|+.++++++.....+|.++|+|+|||+||.+++.++.++|+ ++++|+.+|.... .
T Consensus 160 ~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~vl~~p~~~~~~ 238 (346)
T 3fcy_A 160 LNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVVSEYPFLSDYK 238 (346)
T ss_dssp SBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEEEESCSSCCHH
T ss_pred cCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEEECCCcccCHH
Confidence 000 0125899999999998877888999999999999999999999988 9999999986532 1
Q ss_pred hhccCC-CCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHc
Q 005093 599 LMVGTT-DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 677 (715)
Q Consensus 599 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (715)
...... ....+.....+... ..............+...++...+.++++|+|+++|+.|.++|++.+.++++++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~- 315 (346)
T 3fcy_A 239 RVWDLDLAKNAYQEITDYFRL--FDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVCPPSTVFAAYNNIQS- 315 (346)
T ss_dssp HHHHTTCCCGGGHHHHHHHHH--HCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEETTCSSSCHHHHHHHHTTCCS-
T ss_pred HHhhccccccchHHHHHHHHh--cCCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEeeCCCCcCCHHHHHHHHHhcCC-
Confidence 111110 00000000000000 00000011222333445566677889999999999999999999888777776643
Q ss_pred CCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 678 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 678 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+++++++++++|.+. .++.+.+.+||++.
T Consensus 316 --~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~l 344 (346)
T 3fcy_A 316 --KKDIKVYPDYGHEPM-----RGFGDLAMQFMLEL 344 (346)
T ss_dssp --SEEEEEETTCCSSCC-----TTHHHHHHHHHHTT
T ss_pred --CcEEEEeCCCCCcCH-----HHHHHHHHHHHHHh
Confidence 689999999999886 35678899999874
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=185.55 Aligned_cols=195 Identities=13% Similarity=0.159 Sum_probs=146.2
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCC---CCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP---HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 532 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~---~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~ 532 (715)
.+...+| ++.++++.|+ ..++.|+||++||++ +......+...+..|+++||.|+++|+||.+. +..
T Consensus 10 ~~~~~~g-~l~~~~~~p~---~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~---s~~--- 79 (208)
T 3trd_A 10 LIQGPVG-QLEVMITRPK---GIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGK---SQG--- 79 (208)
T ss_dssp EEECSSS-EEEEEEECCS---SCCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTT---CCS---
T ss_pred EEECCCc-eEEEEEEcCC---CCCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCCC---CCC---
Confidence 3455577 9999999986 345789999999953 22223456678889999999999999999443 321
Q ss_pred CCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceee
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 612 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 612 (715)
.........+|+.++++++.++ .+.++++++|||+||.+++.++ .+| +++++|+++|..+..
T Consensus 80 ~~~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~~-------------- 141 (208)
T 3trd_A 80 RYDNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFYE-------------- 141 (208)
T ss_dssp CCCTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTSG--------------
T ss_pred CccchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEeccccccC--------------
Confidence 1122334578999999999987 3558999999999999999999 667 899999998865100
Q ss_pred eccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc
Q 005093 613 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692 (715)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 692 (715)
+...+..+++|+|+++|++|..+|++.+.++++.+.. .++++++++++|.
T Consensus 142 ---------------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~H~ 191 (208)
T 3trd_A 142 ---------------------------GFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISS---PVEFVVMSGASHF 191 (208)
T ss_dssp ---------------------------GGTTCCSCCSCEEEEEETTCSSSCHHHHHHHHHHSSS---CCEEEEETTCCSS
T ss_pred ---------------------------CchhhhhcCCCEEEEECCCCCCCCHHHHHHHHHHccC---ceEEEEeCCCCCc
Confidence 0122344578999999999999999988887776643 3889999999998
Q ss_pred CCCCCchHHHHHHHHHHH
Q 005093 693 IERPQSDFESFLNIGLWF 710 (715)
Q Consensus 693 ~~~~~~~~~~~~~i~~wl 710 (715)
+... ..++.+.+.+||
T Consensus 192 ~~~~--~~~~~~~i~~fl 207 (208)
T 3trd_A 192 FHGR--LIELRELLVRNL 207 (208)
T ss_dssp CTTC--HHHHHHHHHHHH
T ss_pred cccc--HHHHHHHHHHHh
Confidence 7643 245666666665
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=204.82 Aligned_cols=247 Identities=13% Similarity=0.087 Sum_probs=164.6
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch-HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 534 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~-~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~ 534 (715)
++.+.+|..+.++++.|++ .+.++.|+||++||++.. ...+. ..+..|+++||.|+++|+||.+...... ...
T Consensus 72 ~~~~~~g~~~~~~~~~p~~-~~~~~~p~vv~~hG~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~---~~~ 145 (367)
T 2hdw_A 72 TFANRYGITLAADLYLPKN-RGGDRLPAIVIGGPFGAV--KEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQP---RNV 145 (367)
T ss_dssp EEECTTSCEEEEEEEEESS-CCSSCEEEEEEECCTTCC--TTSHHHHHHHHHHHTTCEEEEECCTTSTTSCCSS---SSC
T ss_pred EEecCCCCEEEEEEEeCCC-CCCCCCCEEEEECCCCCc--chhhHHHHHHHHHHCCCEEEEECCCCcCCCCCcC---ccc
Confidence 4455678999999999985 235678999999997654 33444 3678899999999999999954332111 111
Q ss_pred CCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc-cCCC--------
Q 005093 535 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-GTTD-------- 605 (715)
Q Consensus 535 ~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~-~~~~-------- 605 (715)
.......+|+.++++++.++..++.++|+++|||+||.+++.++.++| .++++|+.+|........ +...
T Consensus 146 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 224 (367)
T 2hdw_A 146 ASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMYDMTRVMSKGYNDSVTLEQRT 224 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCCHHHHHHHTTTTCCCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEeccccccHHHhhhhccccchHHHH
Confidence 112245789999999999987788899999999999999999999988 699999998863211000 0000
Q ss_pred ------------------------CCCce---------eeeccCCCC--CCC---CCCCCChhhHHHHHhcCchhhccCC
Q 005093 606 ------------------------IPDWC---------YVESYGSKG--KDS---FTESPSVEDLTRFHSKSPISHISKV 647 (715)
Q Consensus 606 ------------------------~~~~~---------~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~sp~~~~~~i 647 (715)
.+... ....+.... ... ............+...++...+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 304 (367)
T 2hdw_A 225 RTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMNMPILTYIKEI 304 (367)
T ss_dssp HHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTTSCSCTTGGGG
T ss_pred HHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcCCChhHhHHhh
Confidence 00000 000000000 000 0000001223445566777788899
Q ss_pred C-CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 648 K-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 648 ~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+ +|+|+++|++|. ++..+.+++++ .+.+++++++++++|.+........+.+.+.+||+++|
T Consensus 305 ~~~PvLii~G~~D~--~~~~~~~~~~~---~~~~~~~~~~~g~gH~~~~~~~~~~~~~~i~~fl~~~l 367 (367)
T 2hdw_A 305 SPRPILLIHGERAH--SRYFSETAYAA---AAEPKELLIVPGASHVDLYDRLDRIPFDRIAGFFDEHL 367 (367)
T ss_dssp TTSCEEEEEETTCT--THHHHHHHHHH---SCSSEEEEEETTCCTTHHHHCTTTSCHHHHHHHHHHHC
T ss_pred cCCceEEEecCCCC--CHHHHHHHHHh---CCCCeeEEEeCCCCeeeeecCchhHHHHHHHHHHHhhC
Confidence 9 999999999998 66777666655 57789999999999974322222126789999999875
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-21 Score=200.73 Aligned_cols=228 Identities=17% Similarity=0.193 Sum_probs=158.6
Q ss_pred CceEEEEEEecCCCC--------------CCCCCcEEEEEcCCCCCCCCc---cchHHHHHHH-hCCcEEEEEcCCCCCC
Q 005093 462 QKPFEAIFVSSSHKK--------------DCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLS-SVGYSLLIVNYRGSLG 523 (715)
Q Consensus 462 g~~l~~~l~~P~~~~--------------~~~~~P~vv~iHGg~~~~~~~---~~~~~~~~la-~~G~~vi~~d~rG~~~ 523 (715)
+..+.+.+|.|++.. ..++.|+||++|||++..... .|...+..|+ ++||.|+++||||.++
T Consensus 80 ~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~ 159 (351)
T 2zsh_A 80 RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPE 159 (351)
T ss_dssp TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTSEEEEECCCCTTT
T ss_pred CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 445777899998542 246789999999988654332 2667788888 7899999999999654
Q ss_pred CchhhhhcCCCCCCccchhhHHHHHHHHHHcC----CCCCc-eEEEEEeChhHHHHHHHHhhCCC---ceeEEEecCCcc
Q 005093 524 FGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG----LANPS-KVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLC 595 (715)
Q Consensus 524 ~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~----~~d~~-~i~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~~~~ 595 (715)
+. ....++|+.++++|+.++. .+|.+ +|+|+|||+||.+++.++.++++ +++++|+++|++
T Consensus 160 ~~-----------~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~~~~v~~~vl~~p~~ 228 (351)
T 2zsh_A 160 NP-----------YPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVLGNILLNPMF 228 (351)
T ss_dssp SC-----------TTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTTTCCCCEEEEESCCC
T ss_pred CC-----------CchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhccCCCeeEEEEECCcc
Confidence 31 1234789999999998864 47888 99999999999999999998888 899999999987
Q ss_pred hhhhhccC----CCCCCc--e----eeeccCCCCCCCCCCCCChhhHHHHHhcCch----hhccCCCC-cEEEEeeCCCC
Q 005093 596 NLALMVGT----TDIPDW--C----YVESYGSKGKDSFTESPSVEDLTRFHSKSPI----SHISKVKT-PTIFLLGAQDL 660 (715)
Q Consensus 596 ~~~~~~~~----~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~----~~~~~i~~-P~Lii~G~~D~ 660 (715)
+....... ...... . +...+.... .. ......+|+ ..+.++.+ |+|+++|++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~l~~i~~pP~Lii~G~~D~ 297 (351)
T 2zsh_A 229 GGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEG-------ED----REHPACNPFSPRGKSLEGVSFPKSLVVVAGLDL 297 (351)
T ss_dssp CCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTT-------CC----TTSTTTCTTSTTSCCCTTCCCCEEEEEEETTST
T ss_pred CCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCC-------CC----CCCcccCCCCCCccchhhCCCCCEEEEEcCCCc
Confidence 53211000 000000 0 000000000 00 000011221 23444555 99999999999
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCC---CCchHHHHHHHHHHHHHh
Q 005093 661 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---PQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 661 ~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---~~~~~~~~~~i~~wl~~~ 713 (715)
+++ .+..+++++++.+.+++++++++++|.+.. .+...++++.+.+||+++
T Consensus 298 ~~~--~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~~ 351 (351)
T 2zsh_A 298 IRD--WQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNAE 351 (351)
T ss_dssp THH--HHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC-
T ss_pred chH--HHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 875 678899999999999999999999998765 244567888999999753
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=196.41 Aligned_cols=240 Identities=15% Similarity=0.215 Sum_probs=164.2
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
.+...+|..+.+.++.|. +++.|+||++||++.. ...|...+..|+++||.|+++|+|| +|.+........
T Consensus 39 ~~~~~dg~~l~~~~~~p~----~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~~~~~ 109 (342)
T 3hju_A 39 HLVNADGQYLFCRYWKPT----GTPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVG---HGQSEGERMVVS 109 (342)
T ss_dssp EEECTTSCEEEEEEECCS----SCCSEEEEEECCTTCC--GGGGHHHHHHHHTTTEEEEEECCTT---STTSCSSTTCCS
T ss_pred eEEccCCeEEEEEEeCCC----CCCCcEEEEECCCCcc--cchHHHHHHHHHhCCCeEEEEcCCC---CcCCCCcCCCcC
Confidence 345668999999999885 3567999999997655 4578888999999999999999999 444432111111
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC-----------
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT----------- 604 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~----------- 604 (715)
.....++|+.++++++... .+..+|+|+|||+||.+++.++.++|++++++|+++|...........
T Consensus 110 ~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (342)
T 3hju_A 110 DFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNL 187 (342)
T ss_dssp CTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhHHHHHHHHHHHH
Confidence 2222378999999999887 456799999999999999999999999999999999976432110000
Q ss_pred CCCCceeeeccCCCCCCCCCCCCChhhHHHHH---------------------hcCchhhccCCCCcEEEEeeCCCCcCC
Q 005093 605 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFH---------------------SKSPISHISKVKTPTIFLLGAQDLRVP 663 (715)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~sp~~~~~~i~~P~Lii~G~~D~~v~ 663 (715)
....+.. .... ..... ........+. ..+....+.++++|+|+++|++|.+++
T Consensus 188 ~~~~~~~-~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~ 261 (342)
T 3hju_A 188 VLPNLSL-GPID----SSVLS-RNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCD 261 (342)
T ss_dssp HCTTCBC-CCCC----GGGSC-SCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSSC
T ss_pred hcccccc-Cccc----ccccc-cchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCcCEEEEEeCCCcccC
Confidence 0000000 0000 00000 0001111110 011124567889999999999999999
Q ss_pred chHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCc--hHHHHHHHHHHHHHhc
Q 005093 664 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 714 (715)
Q Consensus 664 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~wl~~~l 714 (715)
.+.+..+++.+.. ..+++++++++||.+..... ..+++..+++||++++
T Consensus 262 ~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (342)
T 3hju_A 262 SKGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRT 312 (342)
T ss_dssp HHHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCC--CCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhccc
Confidence 9888888777642 35889999999998765443 4467788999998865
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=200.15 Aligned_cols=241 Identities=17% Similarity=0.158 Sum_probs=163.1
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCC--
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-- 533 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~-- 533 (715)
++...+|.++.++++.|++ .++.|+||++||++... ...+.. ...|+++||.|+++|+||.+++.........
T Consensus 60 ~~~~~~g~~i~~~~~~P~~---~~~~p~vv~~HG~~~~~-~~~~~~-~~~l~~~g~~v~~~d~rg~g~s~~~~~~~~~~~ 134 (318)
T 1l7a_A 60 TYKSFGNARITGWYAVPDK---EGPHPAIVKYHGYNASY-DGEIHE-MVNWALHGYATFGMLVRGQQRSEDTSISPHGHA 134 (318)
T ss_dssp EEEEGGGEEEEEEEEEESS---CSCEEEEEEECCTTCCS-GGGHHH-HHHHHHTTCEEEEECCTTTSSSCCCCCCSSCCS
T ss_pred EEEccCCCEEEEEEEeeCC---CCCccEEEEEcCCCCCC-CCCccc-ccchhhCCcEEEEecCCCCCCCCCcccccCCcc
Confidence 4445578899999999974 56789999999977541 123333 3477889999999999996655433210000
Q ss_pred -----CCC-------CccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcch-hhhh
Q 005093 534 -----GKV-------GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LALM 600 (715)
Q Consensus 534 -----~~~-------~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~-~~~~ 600 (715)
... ....++|+.++++++.++..+|.++|+++|||+||.+++.++..+|+ ++++++.+|... ....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~~p~~~~~~~~ 213 (318)
T 1l7a_A 135 LGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADYPYLSNFERA 213 (318)
T ss_dssp SSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEESCCSCCHHHH
T ss_pred ccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEecCCcccCHHHH
Confidence 000 01237899999999999877888999999999999999999998876 777777888543 2221
Q ss_pred ccCCCCCCceeeeccCCCCCCCCCCCC--ChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcC
Q 005093 601 VGTTDIPDWCYVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 678 (715)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g 678 (715)
........+.....+.. .. ..+ ...........++...+.++++|+|+++|+.|..+|++.+..+++++..
T Consensus 214 ~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~-- 286 (318)
T 1l7a_A 214 IDVALEQPYLEINSFFR----RN-GSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLET-- 286 (318)
T ss_dssp HHHCCSTTTTHHHHHHH----HS-CCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCS--
T ss_pred HhcCCcCccHHHHHHHh----cc-CCcccHHHHHHhhccccHHHHHhhCCCCEEEEeccCCCCCCcccHHHHHhhcCC--
Confidence 11111111100000000 00 000 0011122334456677888999999999999999999988888877643
Q ss_pred CcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 679 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 679 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
+++++++++++|.. ..+..+.+.+||+++|+
T Consensus 287 -~~~~~~~~~~~H~~-----~~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 287 -KKELKVYRYFGHEY-----IPAFQTEKLAFFKQILK 317 (318)
T ss_dssp -SEEEEEETTCCSSC-----CHHHHHHHHHHHHHHHC
T ss_pred -CeeEEEccCCCCCC-----cchhHHHHHHHHHHHhC
Confidence 48999999999983 24678999999999875
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-22 Score=198.22 Aligned_cols=234 Identities=14% Similarity=0.089 Sum_probs=154.6
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHH---HHHHHhCCcEEEEEcC--CCCCCCchh------
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNY--RGSLGFGEE------ 527 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~---~~~la~~G~~vi~~d~--rG~~~~g~~------ 527 (715)
...|.++...+|.|+++. .+++|+||++||+++.. ..|... .+.++++||.|+++|+ ||.+..|..
T Consensus 24 ~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~~~~~~~~~g 100 (282)
T 3fcx_A 24 VELNCKMKFAVYLPPKAE-TGKCPALYWLSGLTCTE--QNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGEDESWDFG 100 (282)
T ss_dssp TTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC--------CC
T ss_pred hhcCCeeEEEEEcCCCCC-CCCCCEEEEEcCCCCCc--cchhhcchHHHHhhcCCeEEEEeccccCcccccccccccccc
Confidence 346788999999998643 36899999999977653 334333 5778899999999999 776554332
Q ss_pred ----hhhcCCCCC-C--ccchhhHH-HHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh
Q 005093 528 ----ALQSLPGKV-G--SQDVNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599 (715)
Q Consensus 528 ----~~~~~~~~~-~--~~~~~d~~-~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 599 (715)
+........ . .....++. ++++++.+...+|+++|+|+|+|+||++++.++.++|++++++++++|+++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~ 180 (282)
T 3fcx_A 101 TGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVL 180 (282)
T ss_dssp CCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEEEESCCCCGGG
T ss_pred CCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEEEeCCccCccc
Confidence 110000000 0 01122233 445555545557889999999999999999999999999999999999876432
Q ss_pred hccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhcc---CCCCcEEEEeeCCCCcCCchH--HHHHHHHH
Q 005093 600 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS---KVKTPTIFLLGAQDLRVPVSN--GLQYARAL 674 (715)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~---~i~~P~Lii~G~~D~~v~~~~--~~~~~~~l 674 (715)
..... ..+...++. ....+...+|...+. .+.+|+|++||+.|.++|..+ +.++++++
T Consensus 181 ~~~~~----~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~~l 243 (282)
T 3fcx_A 181 CPWGK----KAFSGYLGT-------------DQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFIAAC 243 (282)
T ss_dssp SHHHH----HHHHHHHC----------------CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHHTTSSCHHHHHHHH
T ss_pred CchhH----HHHHHhcCC-------------chhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccccchhhHHHHHHHH
Confidence 10000 000000000 011122334444333 447999999999999986554 56899999
Q ss_pred HHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 675 REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 675 ~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
++.+.+++++++++++|.+.. ....+.+.++|+.++|+
T Consensus 244 ~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 244 TEKKIPVVFRLQEDYDHSYYF---IATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHTTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred HHcCCceEEEECCCCCcCHHH---HHhhhHHHHHHHHHhhc
Confidence 999999999999999998753 23567788899988875
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=189.51 Aligned_cols=240 Identities=15% Similarity=0.213 Sum_probs=162.9
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
.+...+|..++++++.|. +++.|+||++||.+.. ...|...+..|+++||.|+++|+|| +|.+........
T Consensus 21 ~~~~~~g~~l~~~~~~~~----~~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G---~G~s~~~~~~~~ 91 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPT----GTPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVG---HGQSEGERMVVS 91 (303)
T ss_dssp EEECTTSCEEEEEEECCS----SCCSEEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTT---STTSCSSTTCCS
T ss_pred eEecCCCeEEEEEEeccC----CCCCeEEEEECCCCch--hhHHHHHHHHHHhCCCcEEEeCCCC---CCCCCCCCCCCC
Confidence 345668899999999875 3567999999997654 4578888999999999999999999 444432111111
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc-----------CC
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----------TT 604 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-----------~~ 604 (715)
.....++|+.++++++... .+..+++++|||+||.+++.++.++|++++++|+++|......... ..
T Consensus 92 ~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (303)
T 3pe6_A 92 DFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNS 169 (303)
T ss_dssp STHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHHHHHHH
Confidence 1222367888888888876 3457899999999999999999999999999999999764321100 00
Q ss_pred CCCCceeeeccCCCCCCCCCCCCChhhHHHHH---------------------hcCchhhccCCCCcEEEEeeCCCCcCC
Q 005093 605 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFH---------------------SKSPISHISKVKTPTIFLLGAQDLRVP 663 (715)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~sp~~~~~~i~~P~Lii~G~~D~~v~ 663 (715)
....... .... .... .........+. .......+.++++|+|+++|++|..++
T Consensus 170 ~~~~~~~-~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~ 243 (303)
T 3pe6_A 170 VLPNLSS-GPID----SSVL-SRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCD 243 (303)
T ss_dssp TCCSCCC-CCCC----GGGT-CSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSBC
T ss_pred hcccccC-Cccc----hhhh-hcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCC
Confidence 0000000 0000 0000 00001111110 001124567889999999999999999
Q ss_pred chHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCc--hHHHHHHHHHHHHHhc
Q 005093 664 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 714 (715)
Q Consensus 664 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~wl~~~l 714 (715)
.+.+..+++.+. +..+++++++++||.+..... ..+.+..+++||++++
T Consensus 244 ~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~ 294 (303)
T 3pe6_A 244 SKGAYLLMELAK--SQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRT 294 (303)
T ss_dssp HHHHHHHHHHCC--CSSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhcc--cCCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccC
Confidence 988888877764 235889999999998765443 4567888999999875
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=195.24 Aligned_cols=233 Identities=11% Similarity=0.056 Sum_probs=158.5
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCCC-----------Cc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLG-----------FG 525 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~~-----------~g 525 (715)
..|.++...+|.|++++..+++|+||++||++... ..|.. ....+++.|+.|+++|.++.+. .|
T Consensus 26 ~~g~~~~~~v~~P~~~~~~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~~~~~~~~~G~g 103 (280)
T 3i6y_A 26 TLNCAMRFAIYLPPQASTGAKVPVLYWLSGLTCSD--ENFMQKAGAQRLAAELGIAIVAPDTSPRGEGVADDEGYDLGQG 103 (280)
T ss_dssp TTTEEEEEEEEECGGGGTTCCEEEEEEECCTTCCS--SHHHHHSCCHHHHHHHTCEEEEECSSCCSTTCCCCSSTTSSTT
T ss_pred ccCCeeEEEEEeCCCCCCCCCccEEEEecCCCCCh--hHHhhcccHHHHHhhCCeEEEEeCCcccccccCcccccccccC
Confidence 46788999999999776678899999999977653 23333 3456678899999999875321 11
Q ss_pred hhhhhcCCC-CCC-ccc-hhhH-HHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc
Q 005093 526 EEALQSLPG-KVG-SQD-VNDV-LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 601 (715)
Q Consensus 526 ~~~~~~~~~-~~~-~~~-~~d~-~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~ 601 (715)
.++...... .+. ... ...+ .++++++.+...+ +++++|+|||+||++++.++.++|++|+++++++|.++.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~~~ 182 (280)
T 3i6y_A 104 AGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVSAFSPINNPVNCP 182 (280)
T ss_dssp CCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEESCCCCGGGSH
T ss_pred ccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEEEeCCccccccCc
Confidence 111110000 000 001 2222 2445555555434 5899999999999999999999999999999999987643210
Q ss_pred cCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCC--CcEEEEeeCCCCcCCchH-HHHHHHHHHHcC
Q 005093 602 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSN-GLQYARALREKG 678 (715)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~g 678 (715)
... ..+...++. ....+...+|...+.+++ +|+|++||+.|.+++... +.++++++++.|
T Consensus 183 ~~~----~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~l~~~g 245 (280)
T 3i6y_A 183 WGQ----KAFTAYLGK-------------DTDTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAASSNN 245 (280)
T ss_dssp HHH----HHHHHHHCS-------------CGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHHHHHHHHTT
T ss_pred hHH----HHHHHhcCC-------------chHHHHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHHHHHHHHcC
Confidence 000 000000010 112233556666666554 899999999999998654 789999999999
Q ss_pred CcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 679 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 679 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
.+++++++++++|.+.. ....+.++++|+.++|+
T Consensus 246 ~~~~~~~~~g~~H~~~~---~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 246 YPLELRSHEGYDHSYYF---IASFIEDHLRFHSNYLN 279 (280)
T ss_dssp CCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHT
T ss_pred CCceEEEeCCCCccHHH---HHHhHHHHHHHHHhhcc
Confidence 99999999999998742 33567889999999875
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-21 Score=184.29 Aligned_cols=200 Identities=12% Similarity=0.093 Sum_probs=150.9
Q ss_pred ccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCC
Q 005093 457 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 533 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~---~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~ 533 (715)
+...+| .+.++++.|++. ..++.|+||++||++... ....+...+..|+++||.|+++|+||.+.....
T Consensus 15 ~~~~~g-~~~~~~~~p~~~-~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~------ 86 (220)
T 2fuk_A 15 LDGPVG-PLDVAVDLPEPD-VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS------ 86 (220)
T ss_dssp EEETTE-EEEEEEECCCTT-SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC------
T ss_pred EeCCCC-eEEEEEEeCCCC-CccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCCCCCCC------
Confidence 344566 899999999731 015689999999964321 223456778889999999999999994432211
Q ss_pred CCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeee
Q 005093 534 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 613 (715)
Q Consensus 534 ~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 613 (715)
........+|+.++++++.++. +.++++++|||+||.+++.++.++ +++++|+++|......
T Consensus 87 ~~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~-------------- 148 (220)
T 2fuk_A 87 FDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD-------------- 148 (220)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC--------------
T ss_pred cccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh--------------
Confidence 1223345789999999999884 667999999999999999999886 8999999998764211
Q ss_pred ccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 614 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
...+. ...|+|+++|++|..+|.+.+.++++.+. .+++++++++++|.+
T Consensus 149 ---------------------------~~~~~-~~~p~l~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~H~~ 197 (220)
T 2fuk_A 149 ---------------------------FSDVQ-PPAQWLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMPDTSHFF 197 (220)
T ss_dssp ---------------------------CTTCC-CCSSEEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEETTCCTTC
T ss_pred ---------------------------hhhcc-cCCcEEEEECCCCcccCHHHHHHHHHHhC---cCCcEEEeCCCCcee
Confidence 00011 14789999999999999988888777663 458899999999987
Q ss_pred CCCCchHHHHHHHHHHHHHhcC
Q 005093 694 ERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 694 ~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
.. + ..++.+.+.+||+++|+
T Consensus 198 ~~-~-~~~~~~~i~~~l~~~l~ 217 (220)
T 2fuk_A 198 HR-K-LIDLRGALQHGVRRWLP 217 (220)
T ss_dssp TT-C-HHHHHHHHHHHHGGGCS
T ss_pred hh-h-HHHHHHHHHHHHHHHhh
Confidence 65 3 45788999999999874
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-21 Score=190.02 Aligned_cols=188 Identities=15% Similarity=0.150 Sum_probs=149.1
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHH
Q 005093 466 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 545 (715)
Q Consensus 466 ~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~ 545 (715)
.+.++.|... ..++.|+||++||.+.. ...|...+..|+++||.|+++|+||.+.... ....|+.
T Consensus 40 ~~~l~~p~~~-~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~------------~~~~d~~ 104 (262)
T 1jfr_A 40 GGTIYYPTST-ADGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQPD------------SRGRQLL 104 (262)
T ss_dssp CEEEEEESCC-TTCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCHH------------HHHHHHH
T ss_pred ceeEEecCCC-CCCCCCEEEEeCCcCCC--chhHHHHHHHHHhCCCEEEEeCCCCCCCCCc------------hhHHHHH
Confidence 4567788642 34678999999996654 4467778889999999999999999443211 1256888
Q ss_pred HHHHHHHH----cCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCC
Q 005093 546 TAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 621 (715)
Q Consensus 546 ~~i~~l~~----~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (715)
++++++.+ ...++.++++|+|||+||.+++.++.++|+ ++++|+++|...
T Consensus 105 ~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~------------------------- 158 (262)
T 1jfr_A 105 SALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT------------------------- 158 (262)
T ss_dssp HHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-------------------------
T ss_pred HHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc-------------------------
Confidence 89999987 334677899999999999999999999887 899998887421
Q ss_pred CCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchH-HHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchH
Q 005093 622 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVETKVIVFPNDVHGIERPQSDF 700 (715)
Q Consensus 622 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 700 (715)
...+.++++|+|+++|++|..++.+. +..+++.+. .+.+++++++++++|.+..... .
T Consensus 159 -------------------~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~H~~~~~~~-~ 217 (262)
T 1jfr_A 159 -------------------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLP-GSLDKAYLELRGASHFTPNTSD-T 217 (262)
T ss_dssp -------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSC-TTSCEEEEEETTCCTTGGGSCC-H
T ss_pred -------------------cccccccCCCEEEEecCccccCCchhhHHHHHHHhh-cCCCceEEEeCCCCcCCcccch-H
Confidence 12334577999999999999999998 999998884 3567899999999998775543 5
Q ss_pred HHHHHHHHHHHHhcC
Q 005093 701 ESFLNIGLWFKKYCK 715 (715)
Q Consensus 701 ~~~~~i~~wl~~~l~ 715 (715)
++.+.+.+||+++++
T Consensus 218 ~~~~~i~~fl~~~l~ 232 (262)
T 1jfr_A 218 TIAKYSISWLKRFID 232 (262)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc
Confidence 789999999998864
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=195.70 Aligned_cols=190 Identities=16% Similarity=0.172 Sum_probs=151.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|.. .+.+|.|.. ..+.|+||++||++.. ...|...+..|+++||.|+++|+||.+.... ..
T Consensus 80 ~g~~-~~~~~~p~~---~~~~p~vv~~HG~~~~--~~~~~~~~~~la~~G~~vv~~d~~g~g~s~~------------~~ 141 (306)
T 3vis_A 80 DGFG-GGTIYYPRE---NNTYGAIAISPGYTGT--QSSIAWLGERIASHGFVVIAIDTNTTLDQPD------------SR 141 (306)
T ss_dssp SSSC-CEEEEEESS---CSCEEEEEEECCTTCC--HHHHHHHHHHHHTTTEEEEEECCSSTTCCHH------------HH
T ss_pred CCCc-ceEEEeeCC---CCCCCEEEEeCCCcCC--HHHHHHHHHHHHhCCCEEEEecCCCCCCCcc------------hH
Confidence 4443 356778873 3378999999996644 4567788899999999999999999443211 12
Q ss_pred hhhHHHHHHHHHHc------CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeec
Q 005093 541 VNDVLTAIDHVIDM------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 614 (715)
Q Consensus 541 ~~d~~~~i~~l~~~------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (715)
.+|+.++++++.+. ..++.++|+++|||+||.+++.++.++|+ ++++|+++|...
T Consensus 142 ~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~------------------ 202 (306)
T 3vis_A 142 ARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL------------------ 202 (306)
T ss_dssp HHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS------------------
T ss_pred HHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC------------------
Confidence 57888999999887 66788999999999999999999999887 899998887432
Q ss_pred cCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCch-HHHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 615 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~-~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
...+.++++|+|+++|++|..+|.+ ++..+++.++..+ +++++++++++|.+
T Consensus 203 --------------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~ 255 (306)
T 3vis_A 203 --------------------------NKSWRDITVPTLIIGAEYDTIASVTLHSKPFYNSIPSPT-DKAYLELDGASHFA 255 (306)
T ss_dssp --------------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHTCCTTS-CEEEEEETTCCTTG
T ss_pred --------------------------ccccccCCCCEEEEecCCCcccCcchhHHHHHHHhccCC-CceEEEECCCCccc
Confidence 0123457799999999999999998 6889988887655 88999999999987
Q ss_pred CCCCchHHHHHHHHHHHHHhcC
Q 005093 694 ERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 694 ~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
..... .++.+.+.+||+++++
T Consensus 256 ~~~~~-~~~~~~i~~fl~~~l~ 276 (306)
T 3vis_A 256 PNITN-KTIGMYSVAWLKRFVD 276 (306)
T ss_dssp GGSCC-HHHHHHHHHHHHHHHS
T ss_pred hhhch-hHHHHHHHHHHHHHcc
Confidence 65544 5788999999999874
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=196.34 Aligned_cols=230 Identities=17% Similarity=0.196 Sum_probs=161.7
Q ss_pred ccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCccchHHHHHHHhC-CcEEEEEcCCCCCCCchhhhhcCCC
Q 005093 457 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPG 534 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~-~~~~~~~~~~~la~~-G~~vi~~d~rG~~~~g~~~~~~~~~ 534 (715)
+...+| ++.+++|.|++. .++.|+||++|||++.. ....|...+..|+++ ||.|+++||||.+++.
T Consensus 53 i~~~~g-~l~~~~~~P~~~--~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~~~~--------- 120 (310)
T 2hm7_A 53 MDLPGR-TLKVRMYRPEGV--EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHK--------- 120 (310)
T ss_dssp EEETTE-EEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC---------
T ss_pred eccCCC-eEEEEEEecCCC--CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCCCCC---------
Confidence 344455 899999999742 46789999999987543 344677788888875 9999999999965532
Q ss_pred CCCccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhCCC----ceeEEEecCCcchhhhhccCCCCC
Q 005093 535 KVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIP 607 (715)
Q Consensus 535 ~~~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~~~~~~~~~~~~~ 607 (715)
.....+|+.++++|+.+.. .+|.++|+|+|||+||.+++.++.++|+ +++++|+++|..+...... ..
T Consensus 121 --~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~~~~~~~~---~~ 195 (310)
T 2hm7_A 121 --FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAHP---PA 195 (310)
T ss_dssp --TTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCCCCCTTSC---CH
T ss_pred --CCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcCCCcccC---Cc
Confidence 1234789999999998874 3678899999999999999999987765 6999999999876431000 00
Q ss_pred CceeeeccCCCCCCCCCCCCChhhHHH----H---------HhcCchhh--ccCCCCcEEEEeeCCCCcCCchHHHHHHH
Q 005093 608 DWCYVESYGSKGKDSFTESPSVEDLTR----F---------HSKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYAR 672 (715)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------~~~sp~~~--~~~i~~P~Lii~G~~D~~v~~~~~~~~~~ 672 (715)
.+ ..+.. ... ........ + ...+|... +..+ +|+|+++|++|.++ .++..+++
T Consensus 196 ~~---~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~P~lii~G~~D~~~--~~~~~~~~ 263 (310)
T 2hm7_A 196 SI---EENAE---GYL---LTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLSGL-PPAYIATAQYDPLR--DVGKLYAE 263 (310)
T ss_dssp HH---HHTSS---SSS---SCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTC-CCEEEEEEEECTTH--HHHHHHHH
T ss_pred ch---hhcCC---CCC---CCHHHHHHHHHHhCCCCCccCCccCCCCcCccccCC-CCEEEEEecCCCch--HHHHHHHH
Confidence 00 00000 000 00000000 0 01233321 2233 49999999999987 67888999
Q ss_pred HHHHcCCcEEEEEeCCCCccCCC----CCchHHHHHHHHHHHHHhcC
Q 005093 673 ALREKGVETKVIVFPNDVHGIER----PQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 673 ~l~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~wl~~~l~ 715 (715)
++++.|.+++++++++++|.+.. .+...++.+.+.+||+++|+
T Consensus 264 ~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 264 ALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp HHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998763 12335788999999999875
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=218.24 Aligned_cols=254 Identities=14% Similarity=0.179 Sum_probs=171.6
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCC----C-CCccchH-HH---HHHHhCCcEEEEEcCCCCCCCch
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS----V-SLSSYSK-SL---AFLSSVGYSLLIVNYRGSLGFGE 526 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~----~-~~~~~~~-~~---~~la~~G~~vi~~d~rG~~~~g~ 526 (715)
.+...||.+|+++++.|++ .+++|+||++||.+.. . ....|.. .. +.|+++||+|+++|+||+++++.
T Consensus 29 ~i~~~DG~~L~~~~~~P~~---~~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D~RG~g~S~g 105 (615)
T 1mpx_A 29 MIPMRDGVKLHTVIVLPKG---AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEG 105 (615)
T ss_dssp EEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCS
T ss_pred EEECCCCCEEEEEEEeCCC---CCCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEECCCCCCCCCC
Confidence 4556689999999999974 3678999999984322 1 1112221 22 78999999999999999887766
Q ss_pred hhhhcCC--CCCCc---cchhhHHHHHHHHHHc-CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh-
Q 005093 527 EALQSLP--GKVGS---QDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL- 599 (715)
Q Consensus 527 ~~~~~~~--~~~~~---~~~~d~~~~i~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~- 599 (715)
.+....+ ..+.. .+.+|+.++++||.++ +..+ .||+++|+||||++++.++..+|++++++|+.+|+.++..
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~~~~~d~~~~ 184 (615)
T 1mpx_A 106 DYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMG 184 (615)
T ss_dssp CCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCCCTTTT
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEecCCccccccc
Confidence 5432211 11222 6789999999999998 6665 5999999999999999999888999999999999988422
Q ss_pred -hc---cCCCCC--CceeeeccC-----------CCCCC-------------CC-C-CCCChh-------hHHHHHhcCc
Q 005093 600 -MV---GTTDIP--DWCYVESYG-----------SKGKD-------------SF-T-ESPSVE-------DLTRFHSKSP 640 (715)
Q Consensus 600 -~~---~~~~~~--~~~~~~~~~-----------~~~~~-------------~~-~-~~~~~~-------~~~~~~~~sp 640 (715)
.. +..... .|.+..... ..... .+ . ..+.+. ..+.|...||
T Consensus 185 ~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~w~~~Sp 264 (615)
T 1mpx_A 185 DDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYDAFWQEQAL 264 (615)
T ss_dssp SSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSCHHHHTTCH
T ss_pred cccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCCCcChhhhhcCh
Confidence 11 000000 000000000 00000 00 0 000000 1134557789
Q ss_pred hhhccC--CCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCC---cEEEEEeCCCCccCCC------------CCchHH-H
Q 005093 641 ISHISK--VKTPTIFLLGAQDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIER------------PQSDFE-S 702 (715)
Q Consensus 641 ~~~~~~--i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~---~~~~~~~~~~~H~~~~------------~~~~~~-~ 702 (715)
..++++ |++|+|++||..|.. +..++.+++++|+++|. +.++++.|. +|+... .+.... .
T Consensus 265 ~~~~~~~~I~~P~Lii~G~~D~~-~~~~~~~~~~aL~~~g~p~~~~~lvigp~-~H~~~~~~~~~~~~~~f~~~~~~~~~ 342 (615)
T 1mpx_A 265 DKVMARTPLKVPTMWLQGLWDQE-DMWGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFEGDTARQFR 342 (615)
T ss_dssp HHHHHTSCCCSCEEEEEETTCSS-CSSHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHH
T ss_pred hhhhhccCCCCCEEEeecccCcc-ccccHHHHHHHHHhhcCCCcCCEEEECCC-CCCCccccccccCccccCcccchhhh
Confidence 989999 999999999999997 88899999999998864 388999888 687521 111112 2
Q ss_pred HHHHHHHHHHhcC
Q 005093 703 FLNIGLWFKKYCK 715 (715)
Q Consensus 703 ~~~i~~wl~~~l~ 715 (715)
.+.+++||++|||
T Consensus 343 ~~~~~~wfd~~Lk 355 (615)
T 1mpx_A 343 HDVLRPFFDQYLV 355 (615)
T ss_dssp HHTHHHHHHHHHS
T ss_pred hhHHHHHHHHHhc
Confidence 5778999999986
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=187.65 Aligned_cols=233 Identities=12% Similarity=0.171 Sum_probs=156.3
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-Cccch-HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 533 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~~~~-~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~ 533 (715)
.+...+|..+.+.++.|. ..++.|+||++||+++... ...+. .....|++. |.|+++|+||.+...
T Consensus 7 ~~~~~dg~~l~~~~~~p~---~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~-------- 74 (275)
T 3h04_A 7 KVITKDAFALPYTIIKAK---NQPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVS-------- 74 (275)
T ss_dssp EEECTTSCEEEEEEECCS---SSSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSC--------
T ss_pred EEecCCcEEEEEEEEccC---CCCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCccc--------
Confidence 345568899999999987 4557899999999774322 22333 566777776 999999999854321
Q ss_pred CCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCC--------
Q 005093 534 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD-------- 605 (715)
Q Consensus 534 ~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~-------- 605 (715)
.....+|+.++++++.+. .+.++++|+|||+||.+++.++.+ ++++++|+++|..+.........
T Consensus 75 ---~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 147 (275)
T 3h04_A 75 ---LDCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTTNSYYAKIA 147 (275)
T ss_dssp ---HHHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSCCHHHHHHH
T ss_pred ---cchhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccccchhhccc
Confidence 123478999999999988 567899999999999999999998 78999999999876421110000
Q ss_pred --CCCceeeeccCCCCCCCCCCCCChhhHHH-------------HHh-------c-CchhhccCCCCcEEEEeeCCCCcC
Q 005093 606 --IPDWCYVESYGSKGKDSFTESPSVEDLTR-------------FHS-------K-SPISHISKVKTPTIFLLGAQDLRV 662 (715)
Q Consensus 606 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-------~-sp~~~~~~i~~P~Lii~G~~D~~v 662 (715)
.... ....+.. ............... +.. . .....+.++. |+|+++|++|..+
T Consensus 148 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~lii~G~~D~~~ 223 (275)
T 3h04_A 148 QSINET-MIAQLTS--PTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PVFIAHCNGDYDV 223 (275)
T ss_dssp TTSCHH-HHHTTSC--SSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CEEEEEETTCSSS
T ss_pred ccchHH-HHhcccC--CCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CEEEEecCCCCCC
Confidence 0000 0000000 000000000000000 000 0 0111235666 9999999999999
Q ss_pred CchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCch--HHHHHHHHHHHHHhcC
Q 005093 663 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYCK 715 (715)
Q Consensus 663 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~wl~~~l~ 715 (715)
|++.+..+++.+. ..+++++++++|.+...... .++++.+.+||++++.
T Consensus 224 ~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 224 PVEESEHIMNHVP----HSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp CTHHHHHHHTTCS----SEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHhcC----CceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 9988877766553 47899999999998776664 6899999999998863
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=192.85 Aligned_cols=233 Identities=12% Similarity=0.072 Sum_probs=157.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCC-----------CCc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSL-----------GFG 525 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~-----------~~g 525 (715)
..|.++...+|.|++++..+++|+||++||+++.. ..|.. ..+.+++.|+.|+++|.++.+ ++|
T Consensus 24 ~~g~~~~~~v~~P~~~~~~~~~P~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~~~~~~~~~g~g 101 (280)
T 3ls2_A 24 STHCTMRFAVFLPPGASESNKVPVLYWLSGLTCTD--ENFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPNEDSYDFAQG 101 (280)
T ss_dssp TTTEEEEEEEEECTTCBTTBCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCCSCTTSSTT
T ss_pred hcCCceEEEEEcCCCCCCCCCcCEEEEeCCCCCCh--hhhhcchhHHHHHhhCCeEEEEeCCcccccccccccccccccC
Confidence 36788999999999876678899999999976653 23332 355677889999999976422 111
Q ss_pred hhhhhcCCCC-C-Cccc-hhhHH-HHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc
Q 005093 526 EEALQSLPGK-V-GSQD-VNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 601 (715)
Q Consensus 526 ~~~~~~~~~~-~-~~~~-~~d~~-~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~ 601 (715)
..+....+.. + .... ...+. +++.++.+...+ .++++|+|||+||++++.++.++|++|+++++++|.++.....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~~~~~~~~ 180 (280)
T 3ls2_A 102 AGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPV-TSTKAISGHSMGGHGALMIALKNPQDYVSASAFSPIVNPINCP 180 (280)
T ss_dssp CCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEEESCCSCGGGSH
T ss_pred CccccccccccccccccHHHHHHHHHHHHHHhhCCC-CCCeEEEEECHHHHHHHHHHHhCchhheEEEEecCccCcccCc
Confidence 2211111100 0 0011 12222 334555555433 4899999999999999999999999999999999987643210
Q ss_pred cCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCC----CCcEEEEeeCCCCcCCchH-HHHHHHHHHH
Q 005093 602 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV----KTPTIFLLGAQDLRVPVSN-GLQYARALRE 676 (715)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i----~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~ 676 (715)
... ......++. ....+...+|...+.++ .+|+|++||+.|.+++... +.+++++|++
T Consensus 181 ~~~----~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~ 243 (280)
T 3ls2_A 181 WGV----KAFTGYLGA-------------DKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVAKQ 243 (280)
T ss_dssp HHH----HHHHHHHCS-------------CGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHHHHHHHHHH
T ss_pred chh----hHHHhhcCc-------------hHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHHHHHHHHHH
Confidence 000 000000110 11223345565555555 4599999999999998754 8899999999
Q ss_pred cCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 677 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 677 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
.|.+++++++++++|.+.. ....+.++++|+.++|+
T Consensus 244 ~g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 244 KDYPLTLEMQTGYDHSYFF---ISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred hCCCceEEEeCCCCCchhh---HHHHHHHHHHHHHHHhc
Confidence 9999999999999998742 23567889999999875
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-21 Score=196.00 Aligned_cols=242 Identities=19% Similarity=0.192 Sum_probs=160.8
Q ss_pred cccCCCCc-eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcC
Q 005093 456 NLTKGAQK-PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSL 532 (715)
Q Consensus 456 ~~~~~~g~-~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~~~~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~ 532 (715)
++...+|. ++.+++|.|++ ..++.|+||++|||++... ...+...+..|++ .||.|+++||||.+++.
T Consensus 55 ~i~~~~g~~~l~~~~~~P~~--~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~~~~------- 125 (323)
T 1lzl_A 55 SAPGLDGDPEVKIRFVTPDN--TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPETT------- 125 (323)
T ss_dssp EECCSTTCCCEEEEEEEESS--CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTSC-------
T ss_pred EecCCCCCceeEEEEEecCC--CCCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCCCCC-------
Confidence 44555676 79999999974 3467899999999885532 3456677788877 59999999999955431
Q ss_pred CCCCCccchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhCCC----ceeEEEecCCcchhhhhc----
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMV---- 601 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~~~~~~~---- 601 (715)
.....+|+.++++|+.+. ..+|+++|+|+|||+||.+++.++.++++ .++++++++|+.+.....
T Consensus 126 ----~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~ 201 (323)
T 1lzl_A 126 ----FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMT 201 (323)
T ss_dssp ----TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCCTTCCSHHHH
T ss_pred ----CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCccCCCcCchhHH
Confidence 123478999999999874 23677899999999999999999887665 499999999987643210
Q ss_pred cCCCCCCceeeeccCCCCCCCCCCCCCh--hhHHHHHhcCchhhccCCC--CcEEEEeeCCCCcCCchHHHHHHHHHHHc
Q 005093 602 GTTDIPDWCYVESYGSKGKDSFTESPSV--EDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARALREK 677 (715)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (715)
.......+.. ... ......+...... .........+|... ..+. +|+||++|+.|.++ .++..++++++++
T Consensus 202 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~~~~~P~li~~G~~D~~~--~~~~~~~~~l~~~ 276 (323)
T 1lzl_A 202 NFVDTPLWHR-PNA-ILSWKYYLGESYSGPEDPDVSIYAAPSRA-TDLTGLPPTYLSTMELDPLR--DEGIEYALRLLQA 276 (323)
T ss_dssp HCSSCSSCCH-HHH-HHHHHHHHCTTCCCTTCSCCCTTTCGGGC-SCCTTCCCEEEEEETTCTTH--HHHHHHHHHHHHT
T ss_pred HhccCCCCCH-HHH-HHHHHHhCCCCcccccccCCCcccCcccC-cccCCCChhheEECCcCCch--HHHHHHHHHHHHc
Confidence 0000000000 000 0000000000000 00000011223221 1222 79999999999987 6788999999999
Q ss_pred CCcEEEEEeCCCCccCCCCC---chHHHHHHHHHHHHHhcC
Q 005093 678 GVETKVIVFPNDVHGIERPQ---SDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 678 g~~~~~~~~~~~~H~~~~~~---~~~~~~~~i~~wl~~~l~ 715 (715)
|.+++++++++++|++.... ...++++.+.+||+++++
T Consensus 277 g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~ 317 (323)
T 1lzl_A 277 GVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 317 (323)
T ss_dssp TCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999865322 245788999999998864
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-22 Score=202.49 Aligned_cols=227 Identities=18% Similarity=0.238 Sum_probs=161.8
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHH-hCCcEEEEEcCCCCCCCchhhhhcCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLP 533 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~~~~~~~~~la-~~G~~vi~~d~rG~~~~g~~~~~~~~ 533 (715)
++...+|.++.+++|.|.+ ++.|+||++|||++... ...+...+..|+ +.||.|+++|||+++++.
T Consensus 64 ~i~~~~G~~i~~~~~~P~~----~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~-------- 131 (317)
T 3qh4_A 64 VVTGEAGRPVPVRIYRAAP----TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHP-------- 131 (317)
T ss_dssp EEECTTSCEEEEEEEECSC----SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC--------
T ss_pred EecCCCCCeEEEEEEecCC----CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCCC--------
Confidence 4556678899999999973 67899999999876543 335666777776 569999999999866532
Q ss_pred CCCCccchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhCCC----ceeEEEecCCcchhhhhccCCCC
Q 005093 534 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDI 606 (715)
Q Consensus 534 ~~~~~~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~~~~~~~~~~~~ 606 (715)
....++|+.++++|+.++ ..+|+++|+|+|+|+||.+++.++.++++ .++++++++|+.+.......
T Consensus 132 ---~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~--- 205 (317)
T 3qh4_A 132 ---YPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDRPTASR--- 205 (317)
T ss_dssp ---TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCCCSSCCHHH---
T ss_pred ---CchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECceecCCCCcCH---
Confidence 233478999999999885 34788999999999999999999887554 58999999998875310000
Q ss_pred CCceeeeccCCCCCCCCCCCCChhhH----HHHH-------hcCchhhccCCC--CcEEEEeeCCCCcCCchHHHHHHHH
Q 005093 607 PDWCYVESYGSKGKDSFTESPSVEDL----TRFH-------SKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARA 673 (715)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~sp~~~~~~i~--~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (715)
..+.. ... ...... ..+. ..+|... ..+. +|+||++|+.|.++ .++..++++
T Consensus 206 ------~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~l~~lpP~li~~G~~D~~~--~~~~~~a~~ 270 (317)
T 3qh4_A 206 ------SEFRA---TPA---FDGEAASLMWRHYLAGQTPSPESVPGRR-GQLAGLPATLITCGEIDPFR--DEVLDYAQR 270 (317)
T ss_dssp ------HHTTT---CSS---SCHHHHHHHHHHHHTTCCCCTTTCGGGC-SCCTTCCCEEEEEEEESTTH--HHHHHHHHH
T ss_pred ------HHhcC---CCC---cCHHHHHHHHHHhcCCCCCCcccCCCcc-cccCCCCceeEEecCcCCCc--hhHHHHHHH
Confidence 00000 000 000100 1111 1122211 1122 59999999999987 478899999
Q ss_pred HHHcCCcEEEEEeCCCCccCCC----CCchHHHHHHHHHHHHHhcC
Q 005093 674 LREKGVETKVIVFPNDVHGIER----PQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 674 l~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~wl~~~l~ 715 (715)
++++|.+++++++++++|+|.. .+...++++.+.+||+++|+
T Consensus 271 l~~~g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 271 LLGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHHTTCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998652 23446788999999999874
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=196.95 Aligned_cols=208 Identities=10% Similarity=0.122 Sum_probs=148.2
Q ss_pred CCCCCcEEEEEcCCCCCC---CCccchHHHHHH----HhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHH
Q 005093 477 DCSCDPLIVVLHGGPHSV---SLSSYSKSLAFL----SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 549 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~---~~~~~~~~~~~l----a~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~ 549 (715)
..++.|+||++|||++.. ....|...+..| ++.||.|+++|||+++.. .....++|+.++++
T Consensus 37 ~~~~~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~-----------~~~~~~~d~~~~~~ 105 (273)
T 1vkh_A 37 SQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNIT 105 (273)
T ss_dssp CTTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCC-----------CCCcHHHHHHHHHH
Confidence 356789999999987653 344677788888 689999999999985432 11234789999999
Q ss_pred HHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-----------------CCceeEEEecCCcchhhhhccCCCCCCce-e
Q 005093 550 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----------------PDKFVAAAARNPLCNLALMVGTTDIPDWC-Y 611 (715)
Q Consensus 550 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----------------p~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~ 611 (715)
++.++ ++.++++|+|||+||.+++.++.++ |++++++|+++|+.++........ .+. +
T Consensus 106 ~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~--~~~~~ 181 (273)
T 1vkh_A 106 RLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYP--EYDCF 181 (273)
T ss_dssp HHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCG--GGHHH
T ss_pred HHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcc--cHHHH
Confidence 99887 5678999999999999999999885 788999999999876543321110 000 0
Q ss_pred e-eccCCCCCCCCCCCCChhhHHHHHhcCch--hhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC
Q 005093 612 V-ESYGSKGKDSFTESPSVEDLTRFHSKSPI--SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 688 (715)
Q Consensus 612 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (715)
. ..++. ....+. .... ..++. .....+.+|+|+++|++|.++|++++..+++.+++.+.+++++++++
T Consensus 182 ~~~~~~~-~~~~~~--~~~~------~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~ 252 (273)
T 1vkh_A 182 TRLAFPD-GIQMYE--EEPS------RVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDL 252 (273)
T ss_dssp HHHHCTT-CGGGCC--CCHH------HHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhcc-cccchh--hccc------ccChhhhhcccccCCCEEEEecCCcCCCChHHHHHHHHHHHhcCCceEEEEeCC
Confidence 0 00000 000000 0000 11111 01223679999999999999999999999999999999999999999
Q ss_pred CCccCCCCCchHHHHHHHHHHH
Q 005093 689 DVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 689 ~~H~~~~~~~~~~~~~~i~~wl 710 (715)
++|.+.... .++.+.|.+||
T Consensus 253 ~gH~~~~~~--~~~~~~i~~fl 272 (273)
T 1vkh_A 253 GLHNDVYKN--GKVAKYIFDNI 272 (273)
T ss_dssp CSGGGGGGC--HHHHHHHHHTC
T ss_pred CcccccccC--hHHHHHHHHHc
Confidence 999876544 56777787775
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=194.23 Aligned_cols=222 Identities=18% Similarity=0.207 Sum_probs=154.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~-~~~~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
+|.++ +.|++ .....|+||++|||++.... ..+...+..|++ .||.|+++|||+.+++. ..
T Consensus 66 ~g~~~----~~p~~--~~~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~~-----------~~ 128 (322)
T 3k6k_A 66 GGVPC----IRQAT--DGAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENP-----------FP 128 (322)
T ss_dssp TTEEE----EEEEC--TTCCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTSC-----------TT
T ss_pred CCEeE----EecCC--CCCCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCCC-----------Cc
Confidence 55555 45653 22334459999998865433 356667777775 49999999999865431 22
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCc----eeEEEecCCcchhhhhccCCCCCCceeeec
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVES 614 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (715)
..++|+.++++|+.++ .+|+++|+|+|+|+||.+++.++.++++. ++++|+++|+.++...... +...
T Consensus 129 ~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~-------~~~~ 200 (322)
T 3k6k_A 129 AAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSRWS-------NSNL 200 (322)
T ss_dssp HHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCSHH-------HHHT
T ss_pred hHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccCccc-------hhhc
Confidence 3588999999999998 46889999999999999999999887665 8999999998875321100 0000
Q ss_pred cCCCCCCCCCCCCChhhH----HHH--------HhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEE
Q 005093 615 YGSKGKDSFTESPSVEDL----TRF--------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 682 (715)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~----~~~--------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (715)
... ... ...... ..+ ...+|+.......+|+||++|+.|.++ .++..++++++++|++++
T Consensus 201 ~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~G~~D~~~--~~~~~~~~~l~~~g~~~~ 272 (322)
T 3k6k_A 201 ADR----DFL--AEPDTLGEMSELYVGGEDRKNPLISPVYADLSGLPEMLIHVGSEEALL--SDSTTLAERAGAAGVSVE 272 (322)
T ss_dssp GGG----CSS--SCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEESSCTTH--HHHHHHHHHHHHTTCCEE
T ss_pred cCC----CCc--CCHHHHHHHHHHhcCCCCCCCCcCCcccccccCCCcEEEEECCcCccH--HHHHHHHHHHHHCCCCEE
Confidence 000 000 000000 001 122444333334479999999999874 788999999999999999
Q ss_pred EEEeCCCCccCCCC----CchHHHHHHHHHHHHHhcC
Q 005093 683 VIVFPNDVHGIERP----QSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 683 ~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~~l~ 715 (715)
++++++++|.+... +...++++.+.+||+++|+
T Consensus 273 l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (322)
T 3k6k_A 273 LKIWPDMPHVFQMYGKFVNAADISIKEICHWISARIS 309 (322)
T ss_dssp EEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCccccccccccChHHHHHHHHHHHHHHHHHh
Confidence 99999999987642 2345788999999998874
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=193.72 Aligned_cols=244 Identities=17% Similarity=0.148 Sum_probs=182.5
Q ss_pred CCCceEEEEecCCCCC--CeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 005093 52 PSGSKLLVVRNPENES--PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 128 (715)
Q Consensus 52 pdg~~la~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 128 (715)
+.+.+|+|+....++. ..++..+ .++..+.++.....+ ..++|||||++|+|.+...
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v----------~~~~~Spdg~~la~~s~~~---------- 200 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES---------- 200 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCE----------EEEEECTTSSEEEEEECTT----------
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcc----------eeeEEcCCCCEEEEEEecC----------
Confidence 4588999998764221 4566655 555666665543333 7899999999999986532
Q ss_pred CCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeec
Q 005093 129 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 208 (715)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~ 208 (715)
+...|++||+++++.+.+ ......+..++|||||+. |+|+...
T Consensus 201 -------------------------------~~~~i~~~d~~tg~~~~l--~~~~~~~~~~~~spdg~~----la~~~~~ 243 (415)
T 2hqs_A 201 -------------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSK 243 (415)
T ss_dssp -------------------------------SSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTTSSE----EEEEECT
T ss_pred -------------------------------CCcEEEEEECCCCcEEEe--ecCCCcccCEEEcCCCCE----EEEEEec
Confidence 236899999999998887 344446778999999999 9988743
Q ss_pred CccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCC
Q 005093 209 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 288 (715)
Q Consensus 209 ~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~ 288 (715)
+ ...+||++|+ .+++.++++.....+..+.|||||++|+|.+.+.
T Consensus 244 ~------------g~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~------ 288 (415)
T 2hqs_A 244 T------------GSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA------ 288 (415)
T ss_dssp T------------SSCEEEEEET-----------------TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT------
T ss_pred C------------CCceEEEEEC-----------------CCCCEEeCcCCCCcccceEECCCCCEEEEEECCC------
Confidence 2 2347999997 7788888888777888999999999999999653
Q ss_pred ccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 005093 289 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 368 (715)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~ 368 (715)
...+||++|+.+++.+.++.... ....+.|+|||+.|++.+...+...|+.+|+.+++
T Consensus 289 --g~~~i~~~d~~~~~~~~l~~~~~--------------------~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 289 --GRPQVYKVNINGGAPQRITWEGS--------------------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp --SSCEEEEEETTSSCCEECCCSSS--------------------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred --CCcEEEEEECCCCCEEEEecCCC--------------------cccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 23579999998876554442211 12346799999999888877777899999999999
Q ss_pred EEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 369 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 369 ~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
.+.+.... ......|+++|+.|++...... ...|++.++.+
T Consensus 347 ~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~-~~~l~~~d~~g 387 (415)
T 2hqs_A 347 VQVLSSTF-LDETPSLAPNGTMVIYSSSQGM-GSVLNLVSTDG 387 (415)
T ss_dssp EEECCCSS-SCEEEEECTTSSEEEEEEEETT-EEEEEEEETTS
T ss_pred EEEecCCC-CcCCeEEcCCCCEEEEEEcCCC-ccEEEEEECCC
Confidence 98887654 4556789999998888775433 45788888753
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-22 Score=202.50 Aligned_cols=200 Identities=18% Similarity=0.194 Sum_probs=148.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchh
Q 005093 464 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 542 (715)
Q Consensus 464 ~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 542 (715)
.+...+|.|++ ..++.|+||++|||++... ...+...+..|+++||.|+++|||+.++... .....
T Consensus 67 ~~~~~~~~p~~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~~-----------~~~~~ 133 (303)
T 4e15_A 67 RQLVDVFYSEK--TTNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVTL-----------EQLMT 133 (303)
T ss_dssp TCEEEEEECTT--CCTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSCH-----------HHHHH
T ss_pred CcEEEEEecCC--CCCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCCh-----------hHHHH
Confidence 34556888863 4567899999999876543 3356667888999999999999999654321 22478
Q ss_pred hHHHHHHHHHHc-CCCCCceEEEEEeChhHHHHHHHHhhCC-------CceeEEEecCCcchhhhhccCCCCCCceeeec
Q 005093 543 DVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAP-------DKFVAAAARNPLCNLALMVGTTDIPDWCYVES 614 (715)
Q Consensus 543 d~~~~i~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (715)
|+.++++++.+. ...+.++|+|+|||+||++++.++.+.+ ++++++|+++|+.++......... + ....
T Consensus 134 d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~~~~~~--~-~~~~ 210 (303)
T 4e15_A 134 QFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLESV--N-PKNI 210 (303)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHHTCTTT--S-GGGT
T ss_pred HHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhhccccc--c-hhhh
Confidence 999999999873 1245789999999999999999988654 279999999999887544321100 0 0000
Q ss_pred cCCCCCCCCCCCCChhhHHHHHhcCch-hhccCC----CCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCC
Q 005093 615 YGSKGKDSFTESPSVEDLTRFHSKSPI-SHISKV----KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 689 (715)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~~~i----~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (715)
+ .. ..+.+...+|+ ..+..+ .+|+|++||++|..++..++.+++++++++|.++++++++++
T Consensus 211 ~---------~~----~~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~g~ 277 (303)
T 4e15_A 211 L---------GL----NERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGY 277 (303)
T ss_dssp T---------CC----CTTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred h---------cC----CHHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHCCCceEEEEeCCC
Confidence 0 00 11223455666 455554 899999999999999999999999999999999999999999
Q ss_pred Ccc
Q 005093 690 VHG 692 (715)
Q Consensus 690 ~H~ 692 (715)
+|.
T Consensus 278 ~H~ 280 (303)
T 4e15_A 278 DHF 280 (303)
T ss_dssp ETT
T ss_pred Cch
Confidence 994
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=198.33 Aligned_cols=233 Identities=16% Similarity=0.165 Sum_probs=155.4
Q ss_pred CceEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCc---cchHHHHHHH-hCCcEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 462 QKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 462 g~~l~~~l~~P~~~-~~~~~~P~vv~iHGg~~~~~~~---~~~~~~~~la-~~G~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
+..+.+.+|.|++. ...++.|+||++|||++..... .|...+..|+ ++||.|+++||||.+++.
T Consensus 63 ~~~~~~~~~~P~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~~~----------- 131 (338)
T 2o7r_A 63 LHNTFVRLFLPRHALYNSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAPEHR----------- 131 (338)
T ss_dssp TTTEEEEEEEEGGGGGSSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTTTTC-----------
T ss_pred CCCeEEEEEeCCCCCcCCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCCCCC-----------
Confidence 34567778888753 3357889999999988654332 2667788887 789999999999965431
Q ss_pred CccchhhHHHHHHHHHHcC------CCCCceEEEEEeChhHHHHHHHHhhCCC--------ceeEEEecCCcchhhhhcc
Q 005093 537 GSQDVNDVLTAIDHVIDMG------LANPSKVTVVGGSHGGFLTTHLIGQAPD--------KFVAAAARNPLCNLALMVG 602 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~------~~d~~~i~l~G~S~GG~~a~~~a~~~p~--------~~~~~v~~~~~~~~~~~~~ 602 (715)
....++|+.++++|+.++. .+|.++++|+|||+||.+++.++.++|+ +++++|+++|+.+......
T Consensus 132 ~~~~~~d~~~~~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~ 211 (338)
T 2o7r_A 132 LPAAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTG 211 (338)
T ss_dssp TTHHHHHHHHHHHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCH
T ss_pred CchHHHHHHHHHHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCCh
Confidence 1234789999999998863 2567899999999999999999998887 8999999999865321100
Q ss_pred ----CCCCCCce--e----eeccC-CCCCC-CCCCCCChhhHHHHHhcCc---hhhccCCCCcEEEEeeCCCCcCCchHH
Q 005093 603 ----TTDIPDWC--Y----VESYG-SKGKD-SFTESPSVEDLTRFHSKSP---ISHISKVKTPTIFLLGAQDLRVPVSNG 667 (715)
Q Consensus 603 ----~~~~~~~~--~----~~~~~-~~~~~-~~~~~~~~~~~~~~~~~sp---~~~~~~i~~P~Lii~G~~D~~v~~~~~ 667 (715)
........ . ...+. ..... .....+. ...++ +..+..+.+|+|+++|++|.+++ .+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~~~--~~ 282 (338)
T 2o7r_A 212 SELRLANDSRLPTFVLDLIWELSLPMGADRDHEYCNPT-------AESEPLYSFDKIRSLGWRVMVVGCHGDPMID--RQ 282 (338)
T ss_dssp HHHHTTTCSSSCHHHHHHHHHHHSCTTCCTTSTTTCCC-----------CCTHHHHHHHHTCEEEEEEETTSTTHH--HH
T ss_pred hhhccCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCC-------CCCcccccHhhhcCCCCCEEEEECCCCcchH--HH
Confidence 00000000 0 00000 00000 0000000 00010 12223355699999999999886 56
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCCccCCCC--CchHHHHHHHHHHHHHhc
Q 005093 668 LQYARALREKGVETKVIVFPNDVHGIERP--QSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 668 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~wl~~~l 714 (715)
.++++++++.+.+++++++++++|.+... +...++++.+.+||++++
T Consensus 283 ~~~~~~l~~~~~~~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~ 331 (338)
T 2o7r_A 283 MELAERLEKKGVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSC 331 (338)
T ss_dssp HHHHHHHHHTTCEEEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHCCCcEEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhc
Confidence 77889999999999999999999987643 233678899999998765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=195.54 Aligned_cols=298 Identities=13% Similarity=0.113 Sum_probs=186.9
Q ss_pred ccccccccccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCC-CCCeEEEEe-cCCcc
Q 005093 2 FSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQL 79 (715)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~-~~~~~~~~~-~~~~~ 79 (715)
|+...++...+++...||++|+.++. ..+| ..+..++|||||++|||+...++ +..++|.+. .+++.
T Consensus 29 ~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l---------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~ 97 (347)
T 2gop_A 29 YVLTKANLKDNKYENTIVIENLKNNA--RRFI---------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS 97 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEEETTTCC--EEEE---------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEeecCcccCCccceEEEEeCCCCc--eEEc---------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce
Confidence 45555666667788999998776543 3433 34688999999999999987542 445688887 67777
Q ss_pred EEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCc
Q 005093 80 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK 159 (715)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 159 (715)
.+++.... . ..+.|||||++|+|.+....... .........|..+ |.++...
T Consensus 98 ~~l~~~~~-~----------~~~~wspdg~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~-g~~~~~~ 149 (347)
T 2gop_A 98 KKILEAKN-I----------RSLEWNEDSRKLLIVGFKRREDE----------------DFIFEDDVPAWFD-DLGFFDG 149 (347)
T ss_dssp EEEEEESE-E----------EEEEECTTSSEEEEEEECCCC-------------------------CCCC----------
T ss_pred EEEEcCCC-c----------cceeECCCCCEEEEEEccCCCcC----------------CcEEEcccceeec-CcccccC
Confidence 77776543 3 78999999999999875421100 0000111112222 3333333
Q ss_pred cCceEEEEEccCCce-EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh
Q 005093 160 RQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238 (715)
Q Consensus 160 ~~~~l~~~~~~~g~~-~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 238 (715)
...+||++|+++++. +.++ . . .+..+.||||| . ++. +....... +.....+||.+|
T Consensus 150 ~~~~l~~~d~~~~~~~~~l~--~-~-~~~~~~~spdg-~----~~~-~~~~~~~~-----~~~~~~~l~~~d-------- 206 (347)
T 2gop_A 150 EKTTFWIFDTESEEVIEEFE--K-P-RFSSGIWHRDK-I----VVN-VPHREIIP-----QYFKFWDIYIWE-------- 206 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEE--E-E-TTCEEEEETTE-E----EEE-EECCCSSC-----CSSCCEEEEEEE--------
T ss_pred ccceEEEEECCCCeEEeeec--C-C-CcccccCCCCe-E----EEE-Eecccccc-----cccccccEEEeC--------
Confidence 357899999999998 7784 3 3 67789999998 5 444 32221000 000134788876
Q ss_pred hhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeec
Q 005093 239 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 318 (715)
Q Consensus 239 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~ 318 (715)
+++.+.++.. .....+ ||||++|+|.+..... ......+||++| +++.+.++.....
T Consensus 207 -----------~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~---~~~~~~~l~~~d--~~~~~~l~~~~~~---- 263 (347)
T 2gop_A 207 -----------DGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKK---YMSEHNKLYIYD--GKEVMGILDEVDR---- 263 (347)
T ss_dssp -----------TTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSS---CCCSSCEEEEEC--SSCEEESSTTCCS----
T ss_pred -----------CCceEEeccC-cceeeE--CCCCCEEEEEEccccC---CccccceEEEEC--CCceEeccccCCc----
Confidence 2455666654 434333 9999999999876421 112346799998 4444444432111
Q ss_pred eecCCCCCccccccCCCCC-CccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeC
Q 005093 319 VQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 397 (715)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~-~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~ 397 (715)
.+.. +.|+ || ++++...++..+|| ++ +|+.+.+....+.+....+++ .++++.++
T Consensus 264 ---------------~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~--~g~~~~~~~~~~~v~~~~~s~---~~~~~~~~ 319 (347)
T 2gop_A 264 ---------------GVGQAKIKD-GK--VYFTLFEEGSVNLY-IW--DGEIKPIAKGRHWIMGFDVDE---IVVYLKET 319 (347)
T ss_dssp ---------------EEEEEEEET-TE--EEEEEEETTEEEEE-EE--SSSEEEEECSSSEEEEEEESS---SEEEEEEC
T ss_pred ---------------ccCCccEEc-Cc--EEEEEecCCcEEEE-Ec--CCceEEEecCCCeEEeeeeeC---cEEEEEcC
Confidence 1222 5688 77 77888888888999 99 577777776544333333444 68888889
Q ss_pred CCCCCeEEEEe
Q 005093 398 PVDVPQVKYGY 408 (715)
Q Consensus 398 ~~~p~~l~~~~ 408 (715)
...|++||.++
T Consensus 320 ~~~~~~l~~~~ 330 (347)
T 2gop_A 320 ATRLRELFTWD 330 (347)
T ss_dssp SSSCCEEEEES
T ss_pred CCChHHheEeC
Confidence 99999999987
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=193.97 Aligned_cols=225 Identities=19% Similarity=0.228 Sum_probs=158.7
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCccchHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~-~~~~~~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
...+| ++.+++|.|.+ .++.|+||++|||++.. ....|...+..|++ .||.|+++||||.+++.
T Consensus 71 ~~~~~-~i~~~iy~P~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~~~~---------- 136 (323)
T 3ain_A 71 PGSET-NIKARVYYPKT---QGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPENK---------- 136 (323)
T ss_dssp ECSSS-EEEEEEEECSS---CSCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC----------
T ss_pred cCCCC-eEEEEEEecCC---CCCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCCCCC----------
Confidence 33344 89999999973 56789999999987543 34467778888876 49999999999965431
Q ss_pred CCccchhhHHHHHHHHHHcCC-C-CCceEEEEEeChhHHHHHHHHhhCCCce---eEEEecCCcchhhhhccCCCCCCce
Q 005093 536 VGSQDVNDVLTAIDHVIDMGL-A-NPSKVTVVGGSHGGFLTTHLIGQAPDKF---VAAAARNPLCNLALMVGTTDIPDWC 610 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~-~-d~~~i~l~G~S~GG~~a~~~a~~~p~~~---~~~v~~~~~~~~~~~~~~~~~~~~~ 610 (715)
.....+|+.++++|+.+... . |.++|+|+|+|+||.+++.++.++|++. +++++++|+.+...... .+
T Consensus 137 -~p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~~~~~~-----~~- 209 (323)
T 3ain_A 137 -FPAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSFDLITK-----SL- 209 (323)
T ss_dssp -TTHHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSCCSCCH-----HH-
T ss_pred -CcchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccCCCCCc-----cH-
Confidence 12347899999999988631 1 7889999999999999999998887765 89999999876321100 00
Q ss_pred eeeccCCCCCCCCCCCCChhhHHH----H---------HhcCchhh-ccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHH
Q 005093 611 YVESYGSKGKDSFTESPSVEDLTR----F---------HSKSPISH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 676 (715)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~----~---------~~~sp~~~-~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~ 676 (715)
..+.. .... ....... + ...+|+.. +..+ +|+||++|+.|.++ .++..+++++++
T Consensus 210 --~~~~~---~~~l---~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~l-~P~lii~G~~D~l~--~~~~~~a~~l~~ 278 (323)
T 3ain_A 210 --YDNGE---GFFL---TREHIDWFGQQYLRSFADLLDFRFSPILADLNDL-PPALIITAEHDPLR--DQGEAYANKLLQ 278 (323)
T ss_dssp --HHHSS---SSSS---CHHHHHHHHHHHCSSGGGGGCTTTCGGGSCCTTC-CCEEEEEETTCTTH--HHHHHHHHHHHH
T ss_pred --HHhcc---CCCC---CHHHHHHHHHHhCCCCcccCCcccCcccCcccCC-CHHHEEECCCCccH--HHHHHHHHHHHH
Confidence 00000 0000 0000000 0 12234332 2222 59999999999987 578889999999
Q ss_pred cCCcEEEEEeCCCCccCCCC----CchHHHHHHHHHHHHHhc
Q 005093 677 KGVETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 677 ~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~~l 714 (715)
++.+++++++++++|.+... +...++.+.+.+||+++|
T Consensus 279 ag~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 320 (323)
T 3ain_A 279 SGVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVF 320 (323)
T ss_dssp TTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999997642 334578899999999876
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=198.98 Aligned_cols=237 Identities=16% Similarity=0.228 Sum_probs=158.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHH-HHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~-~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
+|..+.++++.+ ..++.|+||++||++.. ...+.... ..+.++||.|+++|+|| +|.+..... .....
T Consensus 143 ~~~~l~~~~~~~----~~~~~p~vv~~HG~~~~--~~~~~~~~~~~~~~~g~~vi~~D~~G---~G~s~~~~~--~~~~~ 211 (405)
T 3fnb_A 143 EGELLPGYAIIS----EDKAQDTLIVVGGGDTS--REDLFYMLGYSGWEHDYNVLMVDLPG---QGKNPNQGL--HFEVD 211 (405)
T ss_dssp TTEEEEEEEECC----SSSCCCEEEEECCSSCC--HHHHHHHTHHHHHHTTCEEEEECCTT---STTGGGGTC--CCCSC
T ss_pred CCeEEEEEEEcC----CCCCCCEEEEECCCCCC--HHHHHHHHHHHHHhCCcEEEEEcCCC---CcCCCCCCC--CCCcc
Confidence 467899988843 34556999999996443 33443333 35668999999999999 444432211 22223
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC-----CCCCCceeeec
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----TDIPDWCYVES 614 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~ 614 (715)
...|+.++++++.... ++|+|+|||+||++++.++.++| +++++|+.+|+.++...... ...+.+.. ..
T Consensus 212 ~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~-~~ 285 (405)
T 3fnb_A 212 ARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRISFSTALKAPKTIL-KW 285 (405)
T ss_dssp THHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHhhhhhhhCcHHHH-HH
Confidence 4778888888886653 78999999999999999999988 89999999999876543210 00111000 00
Q ss_pred cCCCCCCC---------------CCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCC
Q 005093 615 YGSKGKDS---------------FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 679 (715)
Q Consensus 615 ~~~~~~~~---------------~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~ 679 (715)
+.. .... +...........+....+...+.++++|+|+++|++|..+|+.++..+++.++..+.
T Consensus 286 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~~~~l~~~l~~~~~ 364 (405)
T 3fnb_A 286 GSK-LVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGI 364 (405)
T ss_dssp -------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETTSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHH-HhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCCCcCCChHHHHHHHHHhccCCC
Confidence 000 0000 000000011122223333334778899999999999999999999999999999899
Q ss_pred cEEEEEeCCCCcc--CCCCCchHHHHHHHHHHHHHhcC
Q 005093 680 ETKVIVFPNDVHG--IERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 680 ~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
+++++++++..|. ....+....+.+.|.+||+++|+
T Consensus 365 ~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~ 402 (405)
T 3fnb_A 365 DVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFK 402 (405)
T ss_dssp CEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhC
Confidence 9999999666554 22355666788999999999874
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-21 Score=212.00 Aligned_cols=254 Identities=14% Similarity=0.182 Sum_probs=172.6
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCC-----CC-CccchHH---H-HHHHhCCcEEEEEcCCCCCCCc
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-----VS-LSSYSKS---L-AFLSSVGYSLLIVNYRGSLGFG 525 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~-----~~-~~~~~~~---~-~~la~~G~~vi~~d~rG~~~~g 525 (715)
.+...||.+|.++++.|++ .+++|+||++||.+.. .. ...|... . +.|+++||+|+.+|+||+++++
T Consensus 41 ~i~~~DG~~L~~~l~~P~~---~~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~D~RG~g~S~ 117 (652)
T 2b9v_A 41 MVPMRDGVKLYTVIVIPKN---ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQ 117 (652)
T ss_dssp EEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCC
T ss_pred EEECCCCcEEEEEEEecCC---CCCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEEecCcCCCCC
Confidence 4456689999999999974 3678999999973321 00 0111111 2 7899999999999999988877
Q ss_pred hhhhhcCC--CCCC---ccchhhHHHHHHHHHHc-CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh
Q 005093 526 EEALQSLP--GKVG---SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599 (715)
Q Consensus 526 ~~~~~~~~--~~~~---~~~~~d~~~~i~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 599 (715)
..+....+ ..++ ..+.+|+.++++||.++ +..+ .||+++|+||||++++.+++++++.++++|+.+++.++..
T Consensus 118 g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~~~~~~d~~~ 196 (652)
T 2b9v_A 118 GDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWM 196 (652)
T ss_dssp SCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEECCCTTT
T ss_pred CcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEeccccccccc
Confidence 66532211 1122 35789999999999998 7666 6999999999999999999888999999999999888532
Q ss_pred --hc---cCCCCC--CceeeeccCCC---C-----CCCC---C---------------CCCChh-------hHHHHHhcC
Q 005093 600 --MV---GTTDIP--DWCYVESYGSK---G-----KDSF---T---------------ESPSVE-------DLTRFHSKS 639 (715)
Q Consensus 600 --~~---~~~~~~--~~~~~~~~~~~---~-----~~~~---~---------------~~~~~~-------~~~~~~~~s 639 (715)
.. +..... .|......... . ...+ . ..+.+. ..+.|...+
T Consensus 197 ~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~yw~~~S 276 (652)
T 2b9v_A 197 GDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAYDAFWQGQA 276 (652)
T ss_dssp BSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSSSHHHHTTC
T ss_pred ccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCCCChHHhcCC
Confidence 10 000000 00000000000 0 0000 0 000000 012345678
Q ss_pred chhhccC--CCCcEEEEeeCCCCcCCchHHHHHHHHHHHcC--CcEEEEEeCCCCccCCC-----C-------C-chHHH
Q 005093 640 PISHISK--VKTPTIFLLGAQDLRVPVSNGLQYARALREKG--VETKVIVFPNDVHGIER-----P-------Q-SDFES 702 (715)
Q Consensus 640 p~~~~~~--i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g--~~~~~~~~~~~~H~~~~-----~-------~-~~~~~ 702 (715)
|..++++ |++|+|++||..|.. ++.++.+++++|++++ ++.++++.|. +|+... . . .....
T Consensus 277 p~~~~~~~~I~~PvLiv~G~~D~~-~~~~~~~~~~aL~~~g~~~~~~lvigp~-~H~~~~~~~~~~~~~~f~~~~~~~~~ 354 (652)
T 2b9v_A 277 LDKILAQRKPTVPMLWEQGLWDQE-DMWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFEGDTAHQYR 354 (652)
T ss_dssp HHHHHHHHCCCSCEEEEEETTCSS-CSSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHH
T ss_pred hhhhhhcCCCCCCEEEEeecCCcc-ccccHHHHHHHHHhcCCCCCCEEEECCC-CCCCcccccccCCccccccccchhhh
Confidence 8888999 999999999999997 6688999999999998 8889999887 687521 0 1 11223
Q ss_pred HHHHHHHHHHhcC
Q 005093 703 FLNIGLWFKKYCK 715 (715)
Q Consensus 703 ~~~i~~wl~~~l~ 715 (715)
.+.+++||++|||
T Consensus 355 ~~~~~~wfd~~Lk 367 (652)
T 2b9v_A 355 RDVFRPFFDEYLK 367 (652)
T ss_dssp HHTHHHHHHHHHS
T ss_pred hhHHHHHHHHHhC
Confidence 6788999999986
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=195.91 Aligned_cols=234 Identities=10% Similarity=0.030 Sum_probs=157.5
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCCCCchhh-------
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEA------- 528 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~~~g~~~------- 528 (715)
...|.++...+|.|+++. .+++|+||++||++... ..|.. ....+++.||.|+++|+||.+......
T Consensus 23 ~~~g~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~~~~~~~~~~g 99 (278)
T 3e4d_A 23 ETLKSEMTFAVYVPPKAI-HEPCPVVWYLSGLTCTH--ANVMEKGEYRRMASELGLVVVCPDTSPRGNDVPDELTNWQMG 99 (278)
T ss_dssp TTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCCTTCTTSB
T ss_pred cccCCcceEEEEcCCCCC-CCCCCEEEEEcCCCCCc--cchhhcccHHHHHhhCCeEEEecCCcccCccccccccccccc
Confidence 346788999999998653 67899999999976553 33433 344566779999999999743221100
Q ss_pred -----hhcCCC-CC-Cccchh-hHH-HHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh
Q 005093 529 -----LQSLPG-KV-GSQDVN-DVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599 (715)
Q Consensus 529 -----~~~~~~-~~-~~~~~~-d~~-~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 599 (715)
...... .+ ...... .+. ++++++.+...+|+++++|+|||+||++++.++.++|++++++++++|+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 179 (278)
T 3e4d_A 100 KGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCSAFAPIVAPSS 179 (278)
T ss_dssp TTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEESCCSCGGG
T ss_pred CCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEEEeCCcccccC
Confidence 000000 00 011112 222 466677766557789999999999999999999999999999999999876432
Q ss_pred hccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCC--CcEEEEeeCCCCcCCchH-HHHHHHHHHH
Q 005093 600 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSN-GLQYARALRE 676 (715)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~~~~-~~~~~~~l~~ 676 (715)
.... ...+...++. ....+...+|...+.+++ +|+|++||+.|.+++... +..+.+++++
T Consensus 180 ~~~~----~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~ 242 (278)
T 3e4d_A 180 ADWS----EPALEKYLGA-------------DRAAWRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWLFEEAIKG 242 (278)
T ss_dssp CTTT----HHHHHHHHCS-------------CGGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHHHHHHHTT
T ss_pred Cccc----hhhHHHhcCC-------------cHHHHHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHHHHHHHHH
Confidence 1100 0000000110 012233455555555443 599999999999997422 6889999999
Q ss_pred cCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 677 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 677 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
.|.+++++++++++|.+.. ....+.++++|+.++|+
T Consensus 243 ~g~~~~~~~~~g~~H~~~~---~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 243 TDIGLTLRMHDRYDHSYYF---ISTFMDDHLKWHAERLG 278 (278)
T ss_dssp SSCEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred cCCCceEEEeCCCCcCHHH---HHHHHHHHHHHHHHhcC
Confidence 9999999999999998643 23567889999999875
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=192.26 Aligned_cols=235 Identities=17% Similarity=0.194 Sum_probs=157.5
Q ss_pred ccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCccchHHHHHHHhC-CcEEEEEcCCCCCCCchhhhhcCCC
Q 005093 457 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPG 534 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~-~~~~~~~~~~~la~~-G~~vi~~d~rG~~~~g~~~~~~~~~ 534 (715)
+...+| .+.+++|.|.+ ..+.|+||++|||++.. ....|...+..|+++ ||.|+++||||.+++.
T Consensus 53 i~~~~g-~i~~~~~~p~~---~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~g~~~--------- 119 (311)
T 2c7b_A 53 IPVSGG-SIRARVYFPKK---AAGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLAPEYK--------- 119 (311)
T ss_dssp EEETTE-EEEEEEEESSS---CSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCTTTSC---------
T ss_pred ecCCCC-cEEEEEEecCC---CCCCcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCCCCCC---------
Confidence 344455 89999999973 34579999999987433 244677788888875 9999999999965431
Q ss_pred CCCccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhCCC----ceeEEEecCCcchhhhh-------
Q 005093 535 KVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALM------- 600 (715)
Q Consensus 535 ~~~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~~~~~~------- 600 (715)
.....+|+.++++++.+.. .+|+++|+|+|||+||.+++.++.++|+ +++++|+++|+.++...
T Consensus 120 --~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~ 197 (311)
T 2c7b_A 120 --FPTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVVNMTGVPTASLVE 197 (311)
T ss_dssp --TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCCSSCCCHHHHH
T ss_pred --CCccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCccCCccccccCCcc
Confidence 1224788999999988752 3677899999999999999999987765 59999999998763100
Q ss_pred -ccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhh-ccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcC
Q 005093 601 -VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 678 (715)
Q Consensus 601 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g 678 (715)
....... + ...........+..... . ......+|+.. +..+ +|+|+++|+.|.+++ .+..++++++..+
T Consensus 198 ~~~~~~~~-~--~~~~~~~~~~~~~~~~~--~-~~~~~~~p~~~~l~~~-~P~lii~G~~D~~~~--~~~~~~~~l~~~g 268 (311)
T 2c7b_A 198 FGVAETTS-L--PIELMVWFGRQYLKRPE--E-AYDFKASPLLADLGGL-PPALVVTAEYDPLRD--EGELYAYKMKASG 268 (311)
T ss_dssp HHHCTTCS-S--CHHHHHHHHHHHCSSTT--G-GGSTTTCGGGSCCTTC-CCEEEEEETTCTTHH--HHHHHHHHHHHTT
T ss_pred HHHhccCC-C--CHHHHHHHHHHhCCCCc--c-ccCcccCcccccccCC-CcceEEEcCCCCchH--HHHHHHHHHHHCC
Confidence 0000000 0 00000000000000000 0 00011233322 2333 499999999999884 5677888999999
Q ss_pred CcEEEEEeCCCCccCCC----CCchHHHHHHHHHHHHHhcC
Q 005093 679 VETKVIVFPNDVHGIER----PQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 679 ~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~wl~~~l~ 715 (715)
.+++++++++++|.+.. .+...++.+.+.+||+++++
T Consensus 269 ~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 269 SRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp CCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998763 23345788999999998864
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=187.68 Aligned_cols=239 Identities=15% Similarity=0.174 Sum_probs=153.0
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
...+|..+....+.+. ..+.|+||++||++.......+......++++||.|+++|+||.+ .+.. ...
T Consensus 18 ~~~~g~~l~~~~~~~~----~~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G---~s~~-----~~~ 85 (270)
T 3llc_A 18 QGSDARSIAALVRAPA----QDERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHG---ASGG-----AFR 85 (270)
T ss_dssp SGGGCEEEEEEEECCS----STTSCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTST---TCCS-----CGG
T ss_pred eccCcceEEEEeccCC----CCCCCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccCC---CCCC-----ccc
Confidence 3457888877666553 234799999999766543333444677788999999999999944 3321 111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhh---CC---CceeEEEecCCcchhhhhccCCCCCCce-
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---AP---DKFVAAAARNPLCNLALMVGTTDIPDWC- 610 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---~p---~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 610 (715)
...++++.+.+..+++. +..++++|+|||+||.+++.++.+ +| ++++++|+++|..++.............
T Consensus 86 ~~~~~~~~~d~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~~~~~~~~~~~~~ 163 (270)
T 3llc_A 86 DGTISRWLEEALAVLDH--FKPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRER 163 (270)
T ss_dssp GCCHHHHHHHHHHHHHH--HCCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHHHTTGGGCCHHHH
T ss_pred cccHHHHHHHHHHHHHH--hccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchhhhhhhhhhhhhh
Confidence 22344444444433333 135799999999999999999999 99 8999999999987654321100000000
Q ss_pred --eeeccCCCCCCCCCCCC---ChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEE
Q 005093 611 --YVESYGSKGKDSFTESP---SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 685 (715)
Q Consensus 611 --~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (715)
+...........+...+ ................+.++++|+|+++|++|..+|.+.+..+++.+.. .++++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~~~~~~~~~~~~~~--~~~~~~~ 241 (270)
T 3llc_A 164 AELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPA--DDVVLTL 241 (270)
T ss_dssp HHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSCHHHHHHHHHTSCS--SSEEEEE
T ss_pred hhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCCHHHHHHHHHhcCC--CCeeEEE
Confidence 00000000000010001 1122333444445566788899999999999999999888887776633 3589999
Q ss_pred eCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 686 FPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 686 ~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+++++|.+...+....+.+.+.+||++
T Consensus 242 ~~~~gH~~~~~~~~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 242 VRDGDHRLSRPQDIDRMRNAIRAMIEP 268 (270)
T ss_dssp ETTCCSSCCSHHHHHHHHHHHHHHHC-
T ss_pred eCCCcccccccccHHHHHHHHHHHhcC
Confidence 999999876666666777888888865
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-21 Score=199.67 Aligned_cols=236 Identities=17% Similarity=0.162 Sum_probs=160.2
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-Cc--cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 532 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~--~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~ 532 (715)
++...+|..+.+.+|.|.+. .++.|+||++|||++... .. .|......|+++||.|+++||||.+++.
T Consensus 86 ~~~~~~g~~l~~~v~~p~~~--~~~~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~gg~~------- 156 (361)
T 1jkm_A 86 TILGVDGNEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAE------- 156 (361)
T ss_dssp EEECTTSCEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETT-------
T ss_pred eeecCCCCeEEEEEEeCCCC--CCCCeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCCCCC-------
Confidence 34455677899999999742 237899999999875433 33 4666788898899999999999964321
Q ss_pred CCCCCccchhhHHHHHHHHHHcC-CCCCceEEEEEeChhHHHHHHHHhh-----CCCceeEEEecCCcchhhhhcc----
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQ-----APDKFVAAAARNPLCNLALMVG---- 602 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~a~~-----~p~~~~~~v~~~~~~~~~~~~~---- 602 (715)
+.........|+.++++|+.++. ....++|+|+|||+||.+++.++.. +|++++++|+++|+.+......
T Consensus 157 ~~~~~~~~~~D~~~~~~~v~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~~~~~~~~~~~~ 236 (361)
T 1jkm_A 157 GHHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERR 236 (361)
T ss_dssp EECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTSCHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHhhHHhcCCCeEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCccccccccccccc
Confidence 11122345789999999998762 0122399999999999999999987 7879999999999876510000
Q ss_pred CCCCCCceeeeccCCCCCCCCCCCCChhhHHH----H---------HhcCch----hhccCCCCcEEEEeeCCCCcCCch
Q 005093 603 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTR----F---------HSKSPI----SHISKVKTPTIFLLGAQDLRVPVS 665 (715)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------~~~sp~----~~~~~i~~P~Lii~G~~D~~v~~~ 665 (715)
......+. .... .. ........ + ...+|. ..+.++. |+||++|++|.+++
T Consensus 237 ~~~~~~~~---~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~l~-P~Lii~G~~D~~~~-- 303 (361)
T 1jkm_A 237 LTELPSLV---ENDG----YF---IENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLP-PFVVAVNELDPLRD-- 303 (361)
T ss_dssp HHHCTHHH---HTTT----SS---SCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCC-CEEEEEETTCTTHH--
T ss_pred cccCcchh---hccC----cc---cCHHHHHHHHHHhCCCCCCCCCcccCccccChhhHcCCC-ceEEEEcCcCcchh--
Confidence 00000000 0000 00 00000000 0 012333 2345565 99999999999986
Q ss_pred HHHHHHHHHHHcCCcEEEEEeCCCCccCC-CC----Cch-HHHHHHHHHHHHHh
Q 005093 666 NGLQYARALREKGVETKVIVFPNDVHGIE-RP----QSD-FESFLNIGLWFKKY 713 (715)
Q Consensus 666 ~~~~~~~~l~~~g~~~~~~~~~~~~H~~~-~~----~~~-~~~~~~i~~wl~~~ 713 (715)
++..+++++++.|.+++++++++++|.+. .. ... .++.+.+.+||+++
T Consensus 304 ~~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 357 (361)
T 1jkm_A 304 EGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 357 (361)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999876 21 222 57788999999876
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=182.53 Aligned_cols=194 Identities=12% Similarity=0.092 Sum_probs=142.9
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCC----------------CchhhhhcC
Q 005093 469 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG----------------FGEEALQSL 532 (715)
Q Consensus 469 l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~----------------~g~~~~~~~ 532 (715)
++.|+ ..++.|+||++||.+.. ...|...+..|+++||.|+++|.++.+. +..
T Consensus 14 ~~~p~---~~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~------ 82 (232)
T 1fj2_A 14 AIVPA---ARKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSP------ 82 (232)
T ss_dssp EEECC---SSCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCST------
T ss_pred cccCC---CCCCCceEEEEecCCCc--cchHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccCCc------
Confidence 45665 45678999999997654 4466777778888899999985443100 100
Q ss_pred CCCCCcc----chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCC
Q 005093 533 PGKVGSQ----DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 608 (715)
Q Consensus 533 ~~~~~~~----~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~ 608 (715)
....... ..+++.++++++.+ ..+|.++++++|||+||.+++.++.++|++++++|+++|.........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~------ 155 (232)
T 1fj2_A 83 DSQEDESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFP------ 155 (232)
T ss_dssp TCCBCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSC------
T ss_pred ccccccHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCcccc------
Confidence 0001111 24555666666655 447779999999999999999999999999999999999764321100
Q ss_pred ceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCc--EEEEEe
Q 005093 609 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE--TKVIVF 686 (715)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~--~~~~~~ 686 (715)
. ....+.++++|+|+++|++|..++.+.+.++++.+++.+.+ ++++++
T Consensus 156 -------------------~-----------~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 205 (232)
T 1fj2_A 156 -------------------Q-----------GPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTY 205 (232)
T ss_dssp -------------------S-----------SCCCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEE
T ss_pred -------------------c-----------cccccccCCCCEEEEecCCCccCCHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 0 01134567799999999999999999999999999988855 999999
Q ss_pred CCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 687 PNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 687 ~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
++++|.+. .+..+.+.+||+++|+
T Consensus 206 ~~~~H~~~-----~~~~~~i~~~l~~~l~ 229 (232)
T 1fj2_A 206 EGMMHSSC-----QQEMMDVKQFIDKLLP 229 (232)
T ss_dssp TTCCSSCC-----HHHHHHHHHHHHHHSC
T ss_pred CCCCcccC-----HHHHHHHHHHHHHhcC
Confidence 99999873 3556899999999874
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-21 Score=184.09 Aligned_cols=189 Identities=15% Similarity=0.136 Sum_probs=132.8
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHH---c
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID---M 554 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~---~ 554 (715)
.+..++||++||.+.+ ...|..+++.|+..|+.|++|+.+|.+.|+..+..... .....+++..+.++.+++ .
T Consensus 19 ~~a~~~Vv~lHG~G~~--~~~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 94 (210)
T 4h0c_A 19 QRAKKAVVMLHGRGGT--AADIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQ--QNQPALDSALALVGEVVAEIEA 94 (210)
T ss_dssp TTCSEEEEEECCTTCC--HHHHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGG--GGTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCC--HHHHHHHHHHhCCCCeEEEeecCCCCCccccccCCCcc--cchHHHHHHHHHHHHHHHHHHH
Confidence 4567899999995433 33455556677789999999998875544333221111 111123344444443332 2
Q ss_pred CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHH
Q 005093 555 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 634 (715)
Q Consensus 555 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (715)
..+|++||+|+|+|+||.+++.++.++|+++++++++++....... ....
T Consensus 95 ~~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~---------------------------~~~~--- 144 (210)
T 4h0c_A 95 QGIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQEL---------------------------AIGN--- 144 (210)
T ss_dssp TTCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSC---------------------------CGGG---
T ss_pred hCCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhh---------------------------hhhh---
Confidence 3489999999999999999999999999999999998874311000 0000
Q ss_pred HHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 635 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 635 ~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
.......+|+|++||++|++||++.++++++.|++.|.++++++||+.+|.+. .+.++.+.+||.|
T Consensus 145 -------~~~~~~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~-----~~el~~i~~wL~k 210 (210)
T 4h0c_A 145 -------YKGDFKQTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYPGRPHTIS-----GDEIQLVNNTILK 210 (210)
T ss_dssp -------CCBCCTTCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEEEETCCSSCC-----HHHHHHHHHTTTC
T ss_pred -------hhhhccCCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCcC-----HHHHHHHHHHHcC
Confidence 00012247999999999999999999999999999999999999999999875 3456778888753
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=208.39 Aligned_cols=295 Identities=12% Similarity=0.097 Sum_probs=187.5
Q ss_pred EEEEEEEeecCCCCcccc-ccCCCccccccceEEeeCCCCceEEEEecCCC-----CCCeEEEEe-cCCccEEEEecCcc
Q 005093 16 KFMLSTVISKENENSVTF-QWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQT 88 (715)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~ 88 (715)
..|+++|+.++.. .++ +...+.........++|||||++|||..+... ....++.++ .+|+.++++..+..
T Consensus 36 ~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~ 113 (740)
T 4a5s_A 36 NNILVFNAEYGNS--SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNN 113 (740)
T ss_dssp TEEEEEETTTCCE--EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTT
T ss_pred CcEEEEECCCCce--EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCc
Confidence 4688877776653 333 22222211111234899999999999876431 113556655 56665544332222
Q ss_pred ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEE
Q 005093 89 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 168 (715)
Q Consensus 89 ~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (715)
...++|||||++|||+. ..+||+++
T Consensus 114 ----------~~~~~~SPdG~~la~~~---------------------------------------------~~~i~~~~ 138 (740)
T 4a5s_A 114 ----------TQWVTWSPVGHKLAYVW---------------------------------------------NNDIYVKI 138 (740)
T ss_dssp ----------EEEEEECSSTTCEEEEE---------------------------------------------TTEEEEES
T ss_pred ----------ceeeEECCCCCEEEEEE---------------------------------------------CCeEEEEE
Confidence 26899999999999973 25699999
Q ss_pred ccCCceEeecCCCCCC------------------ccceEEEecCCCCCccEEEEEeecCccce---------------ee
Q 005093 169 INSGEVQAVKGIPKSL------------------SVGQVVWAPLNEGLHQYLVFVGWSSETRK---------------LG 215 (715)
Q Consensus 169 ~~~g~~~~l~~~~~~~------------------~~~~~~~spdg~~~~~~i~~~~~~~~~~~---------------~g 215 (715)
+++|+.++++ ..+.. ....+.|||||+. |+|.+.....-+ ..
T Consensus 139 ~~~~~~~~lt-~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~----la~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (740)
T 4a5s_A 139 EPNLPSYRIT-WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF----LAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (740)
T ss_dssp STTSCCEECC-SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE----EEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred CCCCceEEEc-CCCCccceecCcccccccchhcCCCcceEECCCCCE----EEEEEEcccCCceEEEEeecCCCCCCCcc
Confidence 9999998885 22211 1124889999999 999864332100 00
Q ss_pred eeee------ecCCceEEEEecccccchhhhhhhhccCCCC---C---CceecCC------CCccccceeEcCCCCeEEE
Q 005093 216 IKYC------YNRPCALYAVRVSLYKSEASELELKESSSED---L---PVVNLTE------SISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 216 ~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~lt~------~~~~~~~~~~spdg~~l~~ 277 (715)
.... .+....|+++|+ ++ + ....+.. ....+..++|||||+.+++
T Consensus 214 ~~~~yp~~G~~~~~~~l~v~d~-----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~ 276 (740)
T 4a5s_A 214 VRVPYPKAGAVNPTVKFFVVNT-----------------DSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ 276 (740)
T ss_dssp EEEECCBTTSCCCEEEEEEEET-----------------TSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred eeecCCCCcCcCCeeEEEEEEC-----------------CCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEE
Confidence 0000 011226888897 66 5 5556654 4456788999999998888
Q ss_pred EecCCCCCCCCccccceeEeeecCCCC-------CCCcccceeeeeeceecCCCCCccccccC--CCCCCccccCCCEEE
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNG-------NFSSLEKIVDVIPVVQCAEGDCFPGLYSS--SILSNPWLSDGCTML 348 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~-------~~~lt~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~dg~~l~ 348 (715)
..++. .....|+++|+.+++ .+.+.... .+ .|.. ....+.|+|||+.|+
T Consensus 277 ~~~r~-------~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~----------~~-----~~v~~~~~~~p~fspDG~~l~ 334 (740)
T 4a5s_A 277 WLRRI-------QNYSVMDICDYDESSGRWNCLVARQHIEMS----------TT-----GWVGRFRPSEPHFTLDGNSFY 334 (740)
T ss_dssp EEESS-------TTEEEEEEEEEETTTTEEEECGGGCEEEEC----------SS-----SCSSSSSCCCCEECTTSSEEE
T ss_pred EeCCC-------CCEEEEEEEECCCCccccceeEEEEeeecc----------CC-----ceEccCcCCCceEcCCCCEEE
Confidence 87774 234579999998876 12221110 00 0111 134678999999887
Q ss_pred -EEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeC---CCCCCeEEEEeeccc
Q 005093 349 -LSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS---PVDVPQVKYGYFVDK 412 (715)
Q Consensus 349 -~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~---~~~p~~l~~~~~~~~ 412 (715)
+.+...+..+||.+|+++++.++|+.+...+. ..++.+++.|+|++.. ...-..||++++.++
T Consensus 335 ~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~-~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~ 401 (740)
T 4a5s_A 335 KIISNEEGYRHICYFQIDKKDCTFITKGTWEVI-GIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDY 401 (740)
T ss_dssp EEEECTTSCEEEEEEETTCSSCEESCCSSSCEE-EEEEECSSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred EEEEcCCCceEEEEEECCCCceEecccCCEEEE-EEEEEeCCEEEEEEecCCCCCceeEEEEEECCCC
Confidence 66667788999999999999999998755332 2344678899988865 123356888877543
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-20 Score=177.95 Aligned_cols=191 Identities=11% Similarity=0.098 Sum_probs=138.5
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhh----------cCCCCCCc
Q 005093 469 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ----------SLPGKVGS 538 (715)
Q Consensus 469 l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~----------~~~~~~~~ 538 (715)
++.|. ..++.| ||++||.+.. ...|...++.|+ .++.|+++|.++....+..|.. ........
T Consensus 8 ~~~~~---~~~~~p-vv~lHG~g~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~ 80 (209)
T 3og9_A 8 VFKAG---RKDLAP-LLLLHSTGGD--EHQLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLD 80 (209)
T ss_dssp EEECC---CTTSCC-EEEECCTTCC--TTTTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHH
T ss_pred EEeCC---CCCCCC-EEEEeCCCCC--HHHHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHH
Confidence 45554 345678 9999996654 446777778886 8999999996532211111111 00000001
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCC
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 618 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (715)
...+++.+.++.+.+...+|.++++|+|||+||.+++.++.++|++++++|+++|......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------- 141 (209)
T 3og9_A 81 EETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDF------------------- 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcc-------------------
Confidence 1244556666666666557889999999999999999999999999999999988642100
Q ss_pred CCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCc
Q 005093 619 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 698 (715)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 698 (715)
........+|+|++||++|.++|++.+.++++.+++.+.++++++++ ++|.+.
T Consensus 142 ----------------------~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~---- 194 (209)
T 3og9_A 142 ----------------------EQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESS-LGHQLT---- 194 (209)
T ss_dssp ----------------------CCCCCCTTCEEEEEECTTCSSSCHHHHHHHHHHHHHTTCEEEEEECS-STTSCC----
T ss_pred ----------------------cccccccCCCEEEEcCCCCCccCHHHHHHHHHHHHHcCCceEEEEcC-CCCcCC----
Confidence 00012456899999999999999999999999999999999999998 699884
Q ss_pred hHHHHHHHHHHHHHh
Q 005093 699 DFESFLNIGLWFKKY 713 (715)
Q Consensus 699 ~~~~~~~i~~wl~~~ 713 (715)
.+....+.+||+++
T Consensus 195 -~~~~~~~~~~l~~~ 208 (209)
T 3og9_A 195 -QEEVLAAKKWLTET 208 (209)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhh
Confidence 45678899999874
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=182.42 Aligned_cols=210 Identities=16% Similarity=0.095 Sum_probs=153.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC---------
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--------- 535 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~--------- 535 (715)
+..+++.|.+ +.|+||++||.+.. ...|...+..|+++||.|+++|+||. |.+........
T Consensus 13 ~~~~~~~~~~-----~~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~---g~s~~~~~~~~~~~~~~~~~ 82 (238)
T 1ufo_A 13 LSVLARIPEA-----PKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRH---GEREGPPPSSKSPRYVEEVY 82 (238)
T ss_dssp EEEEEEEESS-----CCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTS---TTSSCCCCCTTSTTHHHHHH
T ss_pred EEEEEEecCC-----CccEEEEECCCccc--chHHHHHHHHHHhCCCEEEEecCCCC---ccCCCCCCcccccchhhhHH
Confidence 3445777762 67999999997644 34566667788899999999999994 43321100000
Q ss_pred -CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeec
Q 005093 536 -VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 614 (715)
Q Consensus 536 -~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (715)
......+|+.++++++.+.+. ++++++|||+||.+++.++.++|++++++++.++..... .....
T Consensus 83 ~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~---- 148 (238)
T 1ufo_A 83 RVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMK-------LPQGQ---- 148 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCC-------CCTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccch-------hhhhh----
Confidence 011235688888888877642 789999999999999999999999999988887653211 00000
Q ss_pred cCCCCCCCCCCCCChhhHHHHHhcCchhhccCC-CCcEEEEeeCCCCcCCchHHHHHHHHHH-HcCC-cEEEEEeCCCCc
Q 005093 615 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALR-EKGV-ETKVIVFPNDVH 691 (715)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~-~~g~-~~~~~~~~~~~H 691 (715)
...+ .....+...++...+.++ ++|+|+++|++|..+|.+.+..+++.+. +.+. +++++++++++|
T Consensus 149 ---------~~~~--~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 217 (238)
T 1ufo_A 149 ---------VVED--PGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGH 217 (238)
T ss_dssp ---------CCCC--HHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCS
T ss_pred ---------ccCC--cccchhhcCChhhhhhhccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeCCCCc
Confidence 0111 224555666777777888 8999999999999999999999999998 7777 899999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhc
Q 005093 692 GIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
.+. .+..+.+.+||.++|
T Consensus 218 ~~~-----~~~~~~~~~~l~~~l 235 (238)
T 1ufo_A 218 TLT-----PLMARVGLAFLEHWL 235 (238)
T ss_dssp SCC-----HHHHHHHHHHHHHHH
T ss_pred ccH-----HHHHHHHHHHHHHHH
Confidence 875 356778889998876
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=185.03 Aligned_cols=220 Identities=16% Similarity=0.112 Sum_probs=148.6
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
+..|+||++||.+.. ...|...+..|+++||.|+++|+||.+........ .........+|+.++++++...
T Consensus 20 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~--~~~~~~~~~~d~~~~i~~l~~~---- 91 (251)
T 3dkr_A 20 GTDTGVVLLHAYTGS--PNDMNFMARALQRSGYGVYVPLFSGHGTVEPLDIL--TKGNPDIWWAESSAAVAHMTAK---- 91 (251)
T ss_dssp CSSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTTCSSSCTHHHH--HHCCHHHHHHHHHHHHHHHHTT----
T ss_pred CCCceEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEecCCCCCCCCChhhhc--CcccHHHHHHHHHHHHHHHHHh----
Confidence 456889999996654 45778889999999999999999995433111100 0001111257788888888766
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhh-------
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED------- 631 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 631 (715)
.++++++|||+||.+++.++.++|++++++++.+|............ . .+...+. ......+....
T Consensus 92 ~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~-~--~~~~~~~----~~~~~~~~~~~~~~~~~~ 164 (251)
T 3dkr_A 92 YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGF-L--KYAEYMN----RLAGKSDESTQILAYLPG 164 (251)
T ss_dssp CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHH-H--HHHHHHH----HHHTCCCCHHHHHHHHHH
T ss_pred cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHH-H--HHHHHHH----hhcccCcchhhHHhhhHH
Confidence 57999999999999999999999999999999998765211000000 0 0000000 00000000000
Q ss_pred -HHHHHh--cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHH
Q 005093 632 -LTRFHS--KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 708 (715)
Q Consensus 632 -~~~~~~--~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 708 (715)
...+.. ..+...+.++++|+|+++|++|..+|++.+..+++.+... .+++++++++++|.+.......++.+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~ 243 (251)
T 3dkr_A 165 QLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHALEEDVIA 243 (251)
T ss_dssp HHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSBCTTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCEEEEecCCCcccChHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhHHHHHHHH
Confidence 000110 1123456788999999999999999999999888887653 567899999999988776667789999999
Q ss_pred HHHHhc
Q 005093 709 WFKKYC 714 (715)
Q Consensus 709 wl~~~l 714 (715)
||++..
T Consensus 244 fl~~~~ 249 (251)
T 3dkr_A 244 FMQQEN 249 (251)
T ss_dssp HHHTTC
T ss_pred HHHhhc
Confidence 998753
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=186.71 Aligned_cols=194 Identities=15% Similarity=0.150 Sum_probs=147.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCC-CCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~-~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
++..+...+|.|.+ ++.|+||++|||++. .....|...+..|+++||.|+++|+||++.+. ...
T Consensus 47 ~~~~~~~~~~~p~~----~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~~-----------~~~ 111 (262)
T 2pbl_A 47 EGDRHKFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR-----------ISE 111 (262)
T ss_dssp SSTTCEEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC-----------HHH
T ss_pred CCCCceEEEEccCC----CCCCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCCC-----------hHH
Confidence 34445566888863 678999999997643 33456777788899999999999999854321 122
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC------CCceeEEEecCCcchhhhhccCCCCCCceeee
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 613 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 613 (715)
..+|+.++++++..+.. ++++|+|||+||.+++.++.++ |++++++|+++|+.++........ ..
T Consensus 112 ~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~~~~~~------~~ 182 (262)
T 2pbl_A 112 ITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTSM------NE 182 (262)
T ss_dssp HHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGSTT------HH
T ss_pred HHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHHHhhhh------hh
Confidence 37899999999988753 7899999999999999999887 889999999999876543211100 00
Q ss_pred ccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 614 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
.+ ......+...+|...+.++++|+|+++|++|..++.+++..+++.+. ++++++++++|.+
T Consensus 183 ~~-------------~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~H~~ 244 (262)
T 2pbl_A 183 KF-------------KMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHHFN 244 (262)
T ss_dssp HH-------------CCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCTTT
T ss_pred hh-------------CCCHHHHHhcCcccccCCCCCCEEEEEeCCCCcccHHHHHHHHHHhC-----CeEEEeCCCCcch
Confidence 00 01123455677877788899999999999999999999999988885 7899999999976
Q ss_pred CCC
Q 005093 694 ERP 696 (715)
Q Consensus 694 ~~~ 696 (715)
...
T Consensus 245 ~~~ 247 (262)
T 2pbl_A 245 VIE 247 (262)
T ss_dssp TTG
T ss_pred HHh
Confidence 543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=196.22 Aligned_cols=311 Identities=14% Similarity=0.133 Sum_probs=192.4
Q ss_pred CccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCC
Q 005093 29 NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD 107 (715)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpD 107 (715)
...+|+..+..........++|||||++|||+...+ +..++|.+. .+++..+++...... ...+.||||
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~-g~~~l~~~d~~~~~~~~l~~~~~~~---------~~~~~~spd 91 (396)
T 3c5m_A 22 KVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFD-GNRNYYLLNLETQQAVQLTEGKGDN---------TFGGFISTD 91 (396)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT-SSCEEEEEETTTTEEEECCCSSCBC---------TTTCEECTT
T ss_pred ceEEEecCCCCccceeeecCcCCCCCCEEEEEEecC-CCceEEEEECCCCcEEEeecCCCCc---------cccceECCC
Confidence 455665443211112267789999999999998764 556788887 666665554322211 134899999
Q ss_pred CCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCC-------------------CcccCCcCcccC------CccCc
Q 005093 108 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ-------------------GDWEEDWGETYA------GKRQP 162 (715)
Q Consensus 108 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~g~~~~------~~~~~ 162 (715)
|++|+|.+.... ...+................+... ..+.|+ +..+. .....
T Consensus 92 g~~l~~~~~~~~--l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 92 ERAFFYVKNELN--LMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL-TSWEKFAEFYHTNPTC 168 (396)
T ss_dssp SSEEEEEETTTE--EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHHHHHHHTCCCE
T ss_pred CCEEEEEEcCCc--EEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCC-CcceeeeeeccCCCcc
Confidence 999999875431 111111100000000000001100 123333 22111 02447
Q ss_pred eEEEEEccCCceEeecCCCCCCccceEEEec-CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 163 SLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 163 ~l~~~~~~~g~~~~l~~~~~~~~~~~~~~sp-dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
.|+++|+++++.+.+ .........+.||| ||+. |+|.+.... .....+||.+++
T Consensus 169 ~l~~~d~~~g~~~~~--~~~~~~~~~~~~sp~dg~~----l~~~~~~~~---------~~~~~~l~~~d~---------- 223 (396)
T 3c5m_A 169 RLIKVDIETGELEVI--HQDTAWLGHPIYRPFDDST----VGFCHEGPH---------DLVDARMWLVNE---------- 223 (396)
T ss_dssp EEEEEETTTCCEEEE--EEESSCEEEEEEETTEEEE----EEEEECSCS---------SSCSCCCEEEET----------
T ss_pred eEEEEECCCCcEEee--ccCCcccccceECCCCCCE----EEEEecCCC---------CCCCceEEEEEC----------
Confidence 899999999998888 34444567889999 8998 999863111 012247999997
Q ss_pred hhhccCCCCCCceecCCCC--ccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 242 ELKESSSEDLPVVNLTESI--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~~--~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
+++..+.++... .....+.|||||++|+|.+.... .....|+++|+.+++.+.++..
T Consensus 224 -------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~------~~~~~l~~~d~~~g~~~~l~~~-------- 282 (396)
T 3c5m_A 224 -------DGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG------QTDRVIYKANPETLENEEVMVM-------- 282 (396)
T ss_dssp -------TSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETT------TCCEEEEEECTTTCCEEEEEEC--------
T ss_pred -------CCCceeEeeccCCCccccceEECCCCCEEEEEecCCC------CccceEEEEECCCCCeEEeeeC--------
Confidence 677777777632 24677999999999999987641 1123499999987665433210
Q ss_pred ecCCCCCccccccCCCCCCcccc-CCCEEEEEeee-------------CCeeEEEEEECCCCcEEEecCCCCC-------
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIW-------------GSSQVIISVNVSSGELLRITPAESN------- 378 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~-dg~~l~~~~~~-------------~~~~~l~~~d~~tg~~~~l~~~~~~------- 378 (715)
++ .. +.|+| ||+.+++.... .+...||.+|+.+++.++++.....
T Consensus 283 --------~~-----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (396)
T 3c5m_A 283 --------PP-----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGD 348 (396)
T ss_dssp --------CS-----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTB
T ss_pred --------CC-----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccc
Confidence 00 11 57999 99966654321 2457899999999988888755431
Q ss_pred ----ceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 379 ----FSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 379 ----~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
.....|+++|+.|++..... .+.+||.+++.++.
T Consensus 349 ~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 349 RQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIADVPESY 386 (396)
T ss_dssp SSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCTTC
T ss_pred ccCCCCCceEccCCCeEEEEecCC-CCceEEEEEEcccc
Confidence 23357899999998887654 45679999876553
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=173.00 Aligned_cols=193 Identities=17% Similarity=0.220 Sum_probs=147.5
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH--HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~--~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
.+|.++++++|.|.+ +.|+||++||++.. ...|.. .+..|+++||.|+++|+|| +|.++....+ ..
T Consensus 11 ~~g~~l~~~~~~~~~-----~~~~vv~~hG~~~~--~~~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~~--~~ 78 (207)
T 3bdi_A 11 VNGTRVFQRKMVTDS-----NRRSIALFHGYSFT--SMDWDKADLFNNYSKIGYNVYAPDYPG---FGRSASSEKY--GI 78 (207)
T ss_dssp ETTEEEEEEEECCTT-----CCEEEEEECCTTCC--GGGGGGGTHHHHHHTTTEEEEEECCTT---STTSCCCTTT--CC
T ss_pred eCCcEEEEEEEeccC-----CCCeEEEECCCCCC--ccccchHHHHHHHHhCCCeEEEEcCCc---ccccCcccCC--CC
Confidence 378899999999863 57899999997655 456777 8899999999999999999 4444210001 11
Q ss_pred cc-chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccC
Q 005093 538 SQ-DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 616 (715)
Q Consensus 538 ~~-~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (715)
.. ..+++.+.+..+++.. +.++++++|||+||.+++.++.++|++++++++++|..... +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~----------------~- 139 (207)
T 3bdi_A 79 DRGDLKHAAEFIRDYLKAN--GVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVES----------------L- 139 (207)
T ss_dssp TTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCGG----------------G-
T ss_pred CcchHHHHHHHHHHHHHHc--CCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCccccc----------------h-
Confidence 22 5777777777777763 45799999999999999999999999999999998852100 0
Q ss_pred CCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCC
Q 005093 617 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 696 (715)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 696 (715)
...+.++++|+|+++|++|..++.+.+..+.+.+ .+++++++++++|.+...
T Consensus 140 ------------------------~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~H~~~~~ 191 (207)
T 3bdi_A 140 ------------------------KGDMKKIRQKTLLVWGSKDHVVPIALSKEYASII----SGSRLEIVEGSGHPVYIE 191 (207)
T ss_dssp ------------------------HHHHTTCCSCEEEEEETTCTTTTHHHHHHHHHHS----TTCEEEEETTCCSCHHHH
T ss_pred ------------------------hHHHhhccCCEEEEEECCCCccchHHHHHHHHhc----CCceEEEeCCCCCCcccc
Confidence 2234567899999999999999988887777666 357899999999986533
Q ss_pred CchHHHHHHHHHHHHH
Q 005093 697 QSDFESFLNIGLWFKK 712 (715)
Q Consensus 697 ~~~~~~~~~i~~wl~~ 712 (715)
. ..++.+.+.+||++
T Consensus 192 ~-~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 192 K-PEEFVRITVDFLRN 206 (207)
T ss_dssp S-HHHHHHHHHHHHHT
T ss_pred C-HHHHHHHHHHHHhh
Confidence 3 45678888888875
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=208.49 Aligned_cols=245 Identities=12% Similarity=0.096 Sum_probs=167.2
Q ss_pred cCCCCce--EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC----------------------------------------
Q 005093 458 TKGAQKP--FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---------------------------------------- 495 (715)
Q Consensus 458 ~~~~g~~--l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~---------------------------------------- 495 (715)
...||.+ |.+.+|+|++ .+++|+||..||.+....
T Consensus 179 ~~~DG~~d~L~a~l~~P~~---~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 255 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKS---TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKEL 255 (763)
T ss_dssp TTCSSSCCEEEEEEEECCC---SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCC---CCcccEEEecCCcCCCCcccccccccccccccccccCccccccccccccccccccccc
Confidence 5678999 9999999984 468999999987322100
Q ss_pred ------Cccc-----hHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcC---------
Q 005093 496 ------LSSY-----SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG--------- 555 (715)
Q Consensus 496 ------~~~~-----~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~--------- 555 (715)
...| ....+.|+++||+|+++|+||.++++.. .......+.+|+.++|+||..+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~-----~~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~~ 330 (763)
T 1lns_A 256 PIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGF-----QTSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 330 (763)
T ss_dssp CEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSC-----CCTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCc-----CCCCCHHHHHHHHHHHHHHhhccccccccccc
Confidence 0111 1345789999999999999996554332 12233346889999999998431
Q ss_pred -----CCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC-------CCCCceeeeccCCCCCCCC
Q 005093 556 -----LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-------DIPDWCYVESYGSKGKDSF 623 (715)
Q Consensus 556 -----~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 623 (715)
..+..||+++|+||||++++.+|+.+|+.++++|+.+|+.++....... ..+.+.. ..+........
T Consensus 331 ~~v~q~~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~-~~l~~~~~~~~ 409 (763)
T 1lns_A 331 HEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDL-DVLAALTYSRN 409 (763)
T ss_dssp CEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCH-HHHHHHHCGGG
T ss_pred ccccccCCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhh-hHHhHHHHhhh
Confidence 1345799999999999999999999999999999999988654332111 0000000 00000000000
Q ss_pred C-------------------------CCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcC
Q 005093 624 T-------------------------ESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 678 (715)
Q Consensus 624 ~-------------------------~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g 678 (715)
. ..+. ..+.+...++...+.++++|+|++||..|..+|+.++.+++++++. +
T Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp~~~a~~l~~al~~-~ 486 (763)
T 1lns_A 410 LDGADFLKGNAEYEKRLAEMTAALDRKSGD--YNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE-G 486 (763)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHCTTTCC--CCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-T
T ss_pred cCcchhhhHHHHHHHHHHHHHhhhhhccCc--hhHHhhccChhhHhhcCCCCEEEEEECCCCCCChHHHHHHHHhhcc-C
Confidence 0 0000 0122345667788999999999999999999999999999999976 6
Q ss_pred CcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 679 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 679 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
.+.++++ .+++|.........++.+.+.+||++|||
T Consensus 487 ~~~~l~i-~~~gH~~~~~~~~~~~~~~i~~Ffd~~Lk 522 (763)
T 1lns_A 487 HAKHAFL-HRGAHIYMNSWQSIDFSETINAYFVAKLL 522 (763)
T ss_dssp CCEEEEE-ESCSSCCCTTBSSCCHHHHHHHHHHHHHT
T ss_pred CCeEEEE-eCCcccCccccchHHHHHHHHHHHHHHhc
Confidence 6666655 56789764332233568899999999986
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=179.47 Aligned_cols=219 Identities=17% Similarity=0.225 Sum_probs=149.4
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
+.|+||++||.+.. ...|...+..|+++||.|+++|+||.+...... .. ......++|+.++++++..+ .
T Consensus 39 ~~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~---~~-~~~~~~~~d~~~~i~~l~~~----~ 108 (270)
T 3rm3_A 39 GPVGVLLVHGFTGT--PHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDM---ER-TTFHDWVASVEEGYGWLKQR----C 108 (270)
T ss_dssp SSEEEEEECCTTCC--GGGTHHHHHHHHHTTCEEEECCCTTCSSCHHHH---HT-CCHHHHHHHHHHHHHHHHTT----C
T ss_pred CCeEEEEECCCCCC--hhHHHHHHHHHHHCCCEEEEeCCCCCCCCcccc---cc-CCHHHHHHHHHHHHHHHHhh----C
Confidence 45999999996654 456788899999999999999999944432211 11 11122367788888888765 5
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCC----CCCceeeeccCCCCCC------CCCCCCCh
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD----IPDWCYVESYGSKGKD------SFTESPSV 629 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~ 629 (715)
++++|+|||+||.+++.++.++|+ ++++|+++|............ ...+ ...+...... .+...+ .
T Consensus 109 ~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~ 184 (270)
T 3rm3_A 109 QTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRY--LDSIGSDLKNPDVKELAYEKTP-T 184 (270)
T ss_dssp SEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSE--EECCCCCCSCTTCCCCCCSEEE-H
T ss_pred CcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHH--HHHhCccccccchHhhcccccC-h
Confidence 799999999999999999999999 999999999775433221110 1111 1111110000 000000 1
Q ss_pred hhHHHHHh--cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHH
Q 005093 630 EDLTRFHS--KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 707 (715)
Q Consensus 630 ~~~~~~~~--~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 707 (715)
.....+.. .+....+.++++|+|+++|++|..+|+..+..+++.+.. .+++++++++++|.+.......++.+.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~ 262 (270)
T 3rm3_A 185 ASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISS--TEKEIVRLRNSYHVATLDYDQPMIIERSL 262 (270)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHSCC--SSEEEEEESSCCSCGGGSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhhcCCCEEEEECCCCcccCHHHHHHHHHhcCC--CcceEEEeCCCCcccccCccHHHHHHHHH
Confidence 11111110 112245678899999999999999999999888877743 45789999999999877666678999999
Q ss_pred HHHHHhc
Q 005093 708 LWFKKYC 714 (715)
Q Consensus 708 ~wl~~~l 714 (715)
+||+++.
T Consensus 263 ~fl~~~~ 269 (270)
T 3rm3_A 263 EFFAKHA 269 (270)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999875
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-20 Score=176.49 Aligned_cols=197 Identities=15% Similarity=0.154 Sum_probs=140.8
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHh--CCcEEEEEcCCCC-----CCCc-hhhhhc-C---CCCC
Q 005093 469 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGS-----LGFG-EEALQS-L---PGKV 536 (715)
Q Consensus 469 l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~--~G~~vi~~d~rG~-----~~~g-~~~~~~-~---~~~~ 536 (715)
++.|+ ..++.|+||++||.+.. ...|...+..|++ +||.|+++|++|. .+++ ..|.+. . ....
T Consensus 5 ~~~~~---~~~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~ 79 (218)
T 1auo_A 5 LILQP---AKPADACVIWLHGLGAD--RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSI 79 (218)
T ss_dssp EEECC---SSCCSEEEEEECCTTCC--TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEE
T ss_pred eecCC---CCCCCcEEEEEecCCCC--hhhHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCccccc
Confidence 44554 45678999999997654 4467788888988 9999999997741 0000 000000 0 0001
Q ss_pred Cccc----hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHh-hCCCceeEEEecCCcchhhhhccCCCCCCcee
Q 005093 537 GSQD----VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 611 (715)
Q Consensus 537 ~~~~----~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 611 (715)
.... .+++.++++++.+ ..++.++++++|||+||.+++.++. ++|++++++|+++|..... .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~------~------ 146 (218)
T 1auo_A 80 SLEELEVSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF------G------ 146 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC------C------
T ss_pred chHHHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCc------h------
Confidence 1112 3344455555544 3467889999999999999999999 9999999999999976430 0
Q ss_pred eeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 005093 612 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 691 (715)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 691 (715)
+.. . .....+++|+|+++|++|..+|++.+..+++.+++.+.++++++++ ++|
T Consensus 147 ---~~~---------~--------------~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH 199 (218)
T 1auo_A 147 ---DEL---------E--------------LSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGH 199 (218)
T ss_dssp ---TTC---------C--------------CCHHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSS
T ss_pred ---hhh---------h--------------hhhcccCCCEEEEEeCCCceecHHHHHHHHHHHHhCCCceEEEEec-CCC
Confidence 000 0 0013457899999999999999999999999999888899999999 999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhcC
Q 005093 692 GIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
.+. .+..+.+.+||.++|+
T Consensus 200 ~~~-----~~~~~~~~~~l~~~l~ 218 (218)
T 1auo_A 200 EVL-----PQEIHDIGAWLAARLG 218 (218)
T ss_dssp SCC-----HHHHHHHHHHHHHHHC
T ss_pred ccC-----HHHHHHHHHHHHHHhC
Confidence 874 3567889999999875
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=186.62 Aligned_cols=233 Identities=12% Similarity=0.050 Sum_probs=153.8
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch---HHHHHHHhCCcEEEEEcCC--CCC---------CC
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYR--GSL---------GF 524 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~---~~~~~la~~G~~vi~~d~r--G~~---------~~ 524 (715)
...|.++...+|.|+++. .+++|+||++||+++.. ..|. .....++++|+.|+++|.+ |.+ ++
T Consensus 30 ~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~~~~~~~~~G~ 106 (283)
T 4b6g_A 30 QTLQCEMKFAVYLPNNPE-NRPLGVIYWLSGLTCTE--QNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPNDDAYDLGQ 106 (283)
T ss_dssp TTTTEEEEEEEEECCCTT-CCCEEEEEEECCTTCCS--HHHHHHSCTHHHHHHHTCEEEEECSSCCSTTSCCCSSTTSBT
T ss_pred hhhCCceEEEEEeCCCCC-CCCCCEEEEEcCCCCCc--cchhhcccHHHHHhhCCeEEEEeccccccccccccccccccC
Confidence 346788999999998764 67899999999977653 2332 2346677889999999964 332 12
Q ss_pred chhhhhcCCC-CCC-ccc-hhhHH-HHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh
Q 005093 525 GEEALQSLPG-KVG-SQD-VNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 600 (715)
Q Consensus 525 g~~~~~~~~~-~~~-~~~-~~d~~-~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 600 (715)
|.++...... .+. ... ...+. +++.++.+.. .+.++++|+||||||++++.++.++|++|+++++++|+++....
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~~~~~~~ 185 (283)
T 4b6g_A 107 SAGFYLNATEQPWAANYQMYDYILNELPRLIEKHF-PTNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSPILSPSLV 185 (283)
T ss_dssp TBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHS-CEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEEESCCCCGGGS
T ss_pred CCcccccCccCcccchhhHHHHHHHHHHHHHHHhC-CCCCCeEEEEEChhHHHHHHHHHhCCccceeEEEECCccccccC
Confidence 2222111111 000 011 12222 3444454443 24689999999999999999999999999999999998764321
Q ss_pred ccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCC--CcEEEEeeCCCCcCCc-hHHHHHHHHHHHc
Q 005093 601 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPV-SNGLQYARALREK 677 (715)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~~-~~~~~~~~~l~~~ 677 (715)
.... ......++. ....+...+|...+.+++ +|+|++||+.|.+++. ..+..+++++++.
T Consensus 186 ~~~~----~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~~~ 248 (283)
T 4b6g_A 186 PWGE----KAFTAYLGK-------------DREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDFIETCRAA 248 (283)
T ss_dssp HHHH----HHHHHHHCS-------------CGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHHHHHHHHH
T ss_pred cchh----hhHHhhcCC-------------chHHHHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHHHHHHHHc
Confidence 0000 000000010 012233445555544443 5999999999999975 2378999999999
Q ss_pred CCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 678 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 678 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
|.+++++++++++|.+.. ....+..+++|+.++|+
T Consensus 249 g~~~~~~~~~g~~H~~~~---~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 249 NQPVDVRFHKGYDHSYYF---IASFIGEHIAYHAAFLK 283 (283)
T ss_dssp TCCCEEEEETTCCSSHHH---HHHHHHHHHHHHHTTCC
T ss_pred CCCceEEEeCCCCcCHhH---HHHHHHHHHHHHHHhcC
Confidence 999999999999998742 23567889999999885
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-19 Score=172.78 Aligned_cols=184 Identities=19% Similarity=0.230 Sum_probs=138.3
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHh--CCcEEEEEcCCCCC----------------CCchhhhhcCCCCCCc
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGSL----------------GFGEEALQSLPGKVGS 538 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~--~G~~vi~~d~rG~~----------------~~g~~~~~~~~~~~~~ 538 (715)
..++.|+||++||++.. ...|...+..|++ +||.|+++|++|.+ ++|.+ .....
T Consensus 20 ~~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~------~~~~~ 91 (226)
T 3cn9_A 20 APNADACIIWLHGLGAD--RTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPA------RAIDE 91 (226)
T ss_dssp CTTCCEEEEEECCTTCC--GGGGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSST------TCBCH
T ss_pred CCCCCCEEEEEecCCCC--hHHHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCcccccccccccccc------ccccc
Confidence 55678999999997654 4567788888988 99999999988521 12211 01111
Q ss_pred cchhhHH----HHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHh-hCCCceeEEEecCCcchhhhhccCCCCCCceeee
Q 005093 539 QDVNDVL----TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 613 (715)
Q Consensus 539 ~~~~d~~----~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 613 (715)
..+.+.. ++++.+.+ ..++.++++|+|||+||.+++.++. ++|++++++|+++|........
T Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~------------ 158 (226)
T 3cn9_A 92 DQLNASADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL------------ 158 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC------------
T ss_pred hhHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh------------
Confidence 2233333 44444433 2467789999999999999999999 9999999999999976432110
Q ss_pred ccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 614 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
.. ...++++|+|+++|++|..+|++.+..+++.+.+.+.++++++++ ++|.+
T Consensus 159 -----------------------~~----~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~ 210 (226)
T 3cn9_A 159 -----------------------AL----DERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYP-MGHEV 210 (226)
T ss_dssp -----------------------CC----CTGGGGCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEES-CCSSC
T ss_pred -----------------------hh----cccccCCCEEEEecCCCCccCHHHHHHHHHHHHHcCCceeEEEec-CCCCc
Confidence 00 013567899999999999999999999999999988899999999 99987
Q ss_pred CCCCchHHHHHHHHHHHHHhc
Q 005093 694 ERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 694 ~~~~~~~~~~~~i~~wl~~~l 714 (715)
. .+..+.+.+||+++|
T Consensus 211 ~-----~~~~~~i~~~l~~~l 226 (226)
T 3cn9_A 211 S-----LEEIHDIGAWLRKRL 226 (226)
T ss_dssp C-----HHHHHHHHHHHHHHC
T ss_pred c-----hhhHHHHHHHHHhhC
Confidence 4 356788999999875
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=184.98 Aligned_cols=220 Identities=15% Similarity=0.205 Sum_probs=151.2
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCccchHHHHHHH-hCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchh
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 542 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~-~~~~~~~~~~~la-~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 542 (715)
+.++++.|.+ ++.|+||++|||++.. ....|...+..|+ +.||.|+++||||++++.. ...++
T Consensus 84 ~~~~~~~p~~----~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~~-----------~~~~~ 148 (326)
T 3d7r_A 84 MQVFRFNFRH----QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFHI-----------DDTFQ 148 (326)
T ss_dssp EEEEEEESTT----CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSCH-----------HHHHH
T ss_pred EEEEEEeeCC----CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCCc-----------hHHHH
Confidence 5567788863 5679999999987643 2345666677776 5699999999998654321 12478
Q ss_pred hHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCc----eeEEEecCCcchhhhhccCCCCCCceeeeccCCC
Q 005093 543 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 618 (715)
Q Consensus 543 d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (715)
|+.++++++.++ ++.++|+|+|||+||.+++.++.++|++ ++++|+++|+.+....... ... .. .....
T Consensus 149 d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~--~~~-~~-~~~~~- 221 (326)
T 3d7r_A 149 AIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKD--ISD-AL-IEQDA- 221 (326)
T ss_dssp HHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTT--CCH-HH-HHHCS-
T ss_pred HHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChh--HHh-hh-cccCc-
Confidence 999999999887 6789999999999999999999887766 9999999998764321100 000 00 00000
Q ss_pred CCCCCCCCCChhhH----HHHH--------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEe
Q 005093 619 GKDSFTESPSVEDL----TRFH--------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 686 (715)
Q Consensus 619 ~~~~~~~~~~~~~~----~~~~--------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (715)
. ...... ..+. ..+|+...-...+|+|+++|++|.. ..++..+.+++++.+.+++++++
T Consensus 222 ----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~--~~~~~~~~~~l~~~~~~~~~~~~ 292 (326)
T 3d7r_A 222 ----V---LSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREMT--HPDMKLFEQMMLQHHQYIEFYDY 292 (326)
T ss_dssp ----S---CCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCTTCCCEEEEEETTSTT--HHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ----c---cCHHHHHHHHHHhcCCCCCCCCeECcccCCcccCCCEEEEEeCcccc--hHHHHHHHHHHHHCCCcEEEEEe
Confidence 0 000000 1110 1123221111226999999999964 45778889999999999999999
Q ss_pred CCCCccCCC--CCchHHHHHHHHHHHHHhcC
Q 005093 687 PNDVHGIER--PQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 687 ~~~~H~~~~--~~~~~~~~~~i~~wl~~~l~ 715 (715)
++++|.+.. .+...++.+.+.+||+++++
T Consensus 293 ~g~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 293 PKMVHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp TTCCTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 999998765 24455788999999988763
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-19 Score=180.56 Aligned_cols=239 Identities=14% Similarity=0.247 Sum_probs=152.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..+...++.+.. ..+..|+||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... ......
T Consensus 28 ~~~~~~~~~~~~~~--~~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G---~G~s~~~----~~~~~~ 96 (315)
T 4f0j_A 28 QGQPLSMAYLDVAP--KKANGRTILLMHGKNFC--AGTWERTIDVLADAGYRVIAVDQVG---FCKSSKP----AHYQYS 96 (315)
T ss_dssp TTEEEEEEEEEECC--SSCCSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC----SSCCCC
T ss_pred CCCCeeEEEeecCC--CCCCCCeEEEEcCCCCc--chHHHHHHHHHHHCCCeEEEeecCC---CCCCCCC----CccccC
Confidence 44455555554432 34667999999997655 4578889999999999999999999 4444211 112345
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCC---ce-------
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD---WC------- 610 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~---~~------- 610 (715)
.+++.+.+..+++. ++.++++|+|||+||.+++.++.++|++++++|+++|............... +.
T Consensus 97 ~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (315)
T 4f0j_A 97 FQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGVPWRSVDDWYRRDLQTS 174 (315)
T ss_dssp HHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTCCCCCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccchhhhhHHHHhhcccCC
Confidence 77888877777776 3457999999999999999999999999999999998642110000000000 00
Q ss_pred ------ee-eccCCCC-CC----------CCCCCCChh--------hHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCc
Q 005093 611 ------YV-ESYGSKG-KD----------SFTESPSVE--------DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPV 664 (715)
Q Consensus 611 ------~~-~~~~~~~-~~----------~~~~~~~~~--------~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~ 664 (715)
+. ..+.... .. ......... ........+....+.++++|+|+++|++|..+|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~lii~G~~D~~~p~ 254 (315)
T 4f0j_A 175 AEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRLQMPTLLLIGEKDNTAIG 254 (315)
T ss_dssp HHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCCCCTT
T ss_pred hHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhcccCCCCeEEEEecCCCcCcc
Confidence 00 0000000 00 000000000 0011122334456788999999999999999995
Q ss_pred hHH------------HHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 665 SNG------------LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 665 ~~~------------~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
.+. .+..+.+.+....+++++++++||..... ...++.+.|.+||+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~-~p~~~~~~i~~fl~~~ 314 (315)
T 4f0j_A 255 KDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQIQ-APERFHQALLEGLQTQ 314 (315)
T ss_dssp GGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEETTCCSCHHHH-SHHHHHHHHHHHHCC-
T ss_pred ccccccccccccccchhhhhHHHhhcCCceEEEeCCCCcchhhh-CHHHHHHHHHHHhccC
Confidence 444 44555566555678999999999986543 4457888899998753
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-20 Score=185.38 Aligned_cols=230 Identities=13% Similarity=0.050 Sum_probs=149.0
Q ss_pred CCCceEEEEEEecCCCC----CCCCCcEEEEEcCCCCCCCCccchH--HHHHH-HhCCcEEEEEcCCCCCCCchhhhhcC
Q 005093 460 GAQKPFEAIFVSSSHKK----DCSCDPLIVVLHGGPHSVSLSSYSK--SLAFL-SSVGYSLLIVNYRGSLGFGEEALQSL 532 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~----~~~~~P~vv~iHGg~~~~~~~~~~~--~~~~l-a~~G~~vi~~d~rG~~~~g~~~~~~~ 532 (715)
..|.++.+++|.|++++ +.++.|+||++||++.. ...|.. .+..+ ++.|+.|+++|+++++......
T Consensus 16 ~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---- 89 (263)
T 2uz0_A 16 VLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGN--HNSWLKRTNVERLLRGTNLIVVMPNTSNGWYTDTQY---- 89 (263)
T ss_dssp TTTEEEEEEEEECC---------CCBCEEEEECCTTCC--TTHHHHHSCHHHHTTTCCCEEEECCCTTSTTSBCTT----
T ss_pred hhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCC--HHHHHhccCHHHHHhcCCeEEEEECCCCCccccCCC----
Confidence 35678999999998752 35789999999997755 334444 34444 5689999999998753211000
Q ss_pred CCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCce--
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC-- 610 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 610 (715)
.........+|+.++++.+..+..+|.++++|+|||+||.+++.++. +|++++++++++|..+.......... .+.
T Consensus 90 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~ 167 (263)
T 2uz0_A 90 GFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALSFQNFSPESQN-LGSPA 167 (263)
T ss_dssp SCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCCSSSCCGGGTT-CSCHH
T ss_pred cccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcchhhccccccc-cccch
Confidence 00001111334444444443323457799999999999999999999 89999999999998765431100000 000
Q ss_pred -eeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCC--CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeC
Q 005093 611 -YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 687 (715)
Q Consensus 611 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (715)
....++. .. ...+...+|...+.++. +|+|++||++|.++ ..+..+++++++.|.++++++++
T Consensus 168 ~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v--~~~~~~~~~l~~~g~~~~~~~~~ 233 (263)
T 2uz0_A 168 YWRGVFGE---------IR---DWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLY--EANNLAVKNLKKLGFDVTYSHSA 233 (263)
T ss_dssp HHHHHHCC---------CS---CTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTH--HHHHHHHHHHHHTTCEEEEEEES
T ss_pred hHHHHcCC---------hh---hhccccCCHHHHHHhccCCCeEEEEeCCCchhh--HHHHHHHHHHHHCCCCeEEEECC
Confidence 0000000 00 01123345555566665 79999999999988 45788999999999999999999
Q ss_pred CCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 688 NDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 688 ~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
+ +|.+.. ..+.+..+++||.++|+
T Consensus 234 g-~H~~~~---~~~~~~~~~~~l~~~l~ 257 (263)
T 2uz0_A 234 G-THEWYY---WEKQLEVFLTTLPIDFK 257 (263)
T ss_dssp C-CSSHHH---HHHHHHHHHHHSSSCCC
T ss_pred C-CcCHHH---HHHHHHHHHHHHHhhcc
Confidence 9 997642 23567889999988764
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=180.57 Aligned_cols=206 Identities=11% Similarity=-0.032 Sum_probs=144.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-----cchHHHHHHHhC----CcEEEEEcCCCCCCCchhhhhc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLSSV----GYSLLIVNYRGSLGFGEEALQS 531 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-----~~~~~~~~la~~----G~~vi~~d~rG~~~~g~~~~~~ 531 (715)
.|..+...+|.|+++...+++|+||++||++...... .+...++.|+++ ||.|+++|+++.+. ..
T Consensus 42 ~~~~~~~~v~~P~~~~~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d~~~~~~---~~--- 115 (268)
T 1jjf_A 42 TNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGP---GI--- 115 (268)
T ss_dssp TTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCCCCT---TC---
T ss_pred cCCceEEEEEeCCCCCCCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeCCCCCCc---cc---
Confidence 5778999999999876678899999999976543211 123346777776 59999999998432 10
Q ss_pred CCCCCCccchhh-HHHHHHHHHHcCCC--CCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCC
Q 005093 532 LPGKVGSQDVND-VLTAIDHVIDMGLA--NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 608 (715)
Q Consensus 532 ~~~~~~~~~~~d-~~~~i~~l~~~~~~--d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~ 608 (715)
...+. ...++ +.++++++.++..+ |+++|+|+|||+||++++.++.++|++|+++++++|..+....
T Consensus 116 -~~~~~-~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~~-------- 185 (268)
T 1jjf_A 116 -ADGYE-NFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPN-------- 185 (268)
T ss_dssp -SCHHH-HHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTTSCCH--------
T ss_pred -cccHH-HHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEeCCCCCCCch--------
Confidence 00000 11233 44566677665444 7899999999999999999999999999999999996542110
Q ss_pred ceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCC-cEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeC
Q 005093 609 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT-PTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 687 (715)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~-P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (715)
...+.. .. . ...... |+|++||+.|..++ .+..+++.++++|.++++++++
T Consensus 186 ---~~~~~~---------~~-~-------------~~~~~~pp~li~~G~~D~~v~--~~~~~~~~l~~~g~~~~~~~~~ 237 (268)
T 1jjf_A 186 ---ERLFPD---------GG-K-------------AAREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQ 237 (268)
T ss_dssp ---HHHCTT---------TT-H-------------HHHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCEEEEET
T ss_pred ---hhhcCc---------ch-h-------------hhhhcCceEEEEecCCCCCcc--HHHHHHHHHHHCCCceEEEEcC
Confidence 000000 00 0 001123 59999999999987 4678999999999999999999
Q ss_pred CCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 688 NDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 688 ~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+++|.+.. ..+.+..+++||.+.
T Consensus 238 g~~H~~~~---~~~~~~~~~~~l~~~ 260 (268)
T 1jjf_A 238 GGGHDFNV---WKPGLWNFLQMADEA 260 (268)
T ss_dssp TCCSSHHH---HHHHHHHHHHHHHHH
T ss_pred CCCcCHhH---HHHHHHHHHHHHHhc
Confidence 99998742 235567889998775
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-20 Score=190.25 Aligned_cols=222 Identities=18% Similarity=0.219 Sum_probs=152.6
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHH-hCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~~~~~~~~~la-~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
...+| .+.+++| +. .++.|+||++|||++... ...+...+..|+ +.||.|+++||||.+++.
T Consensus 62 ~~~~g-~i~~~~y-~~----~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~~~---------- 125 (311)
T 1jji_A 62 KGRNG-DIRVRVY-QQ----KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHK---------- 125 (311)
T ss_dssp EETTE-EEEEEEE-ES----SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSC----------
T ss_pred cCCCC-cEEEEEE-cC----CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCCCC----------
Confidence 33455 7888888 42 456899999999885432 346677788887 689999999999955431
Q ss_pred CCccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhCCCc----eeEEEecCCcchhhhhccCCCCCC
Q 005093 536 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPD 608 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~~~~~~~~~~~~~~~~~ 608 (715)
.....+|+.++++|+.+.. .+|+++|+|+|||+||.+++.++.+++++ ++++|+++|+.+...... .
T Consensus 126 -~p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~-----~ 199 (311)
T 1jji_A 126 -FPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTP-----S 199 (311)
T ss_dssp -TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSCCH-----H
T ss_pred -CCCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCCCCc-----c
Confidence 1224678889999988752 36778999999999999999999877665 999999999876431100 0
Q ss_pred ceeeeccCCCCCCCCCCCCChhhHHH-------------HHhcCchh-hccCCCCcEEEEeeCCCCcCCchHHHHHHHHH
Q 005093 609 WCYVESYGSKGKDSFTESPSVEDLTR-------------FHSKSPIS-HISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 674 (715)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~sp~~-~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (715)
+ ..+.. ..+ . ........ ....+|+. .+..+ +|+||++|+.|.++ .++..+++++
T Consensus 200 ~---~~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~P~li~~G~~D~l~--~~~~~~~~~l 268 (311)
T 1jji_A 200 L---LEFGE---GLW-I-LDQKIMSWFSEQYFSREEDKFNPLASVIFADLENL-PPALIITAEYDPLR--DEGEVFGQML 268 (311)
T ss_dssp H---HHTSS---SCS-S-CCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTC-CCEEEEEEEECTTH--HHHHHHHHHH
T ss_pred H---HHhcC---CCc-c-CCHHHHHHHHHHhCCCCccCCCcccCcccccccCC-ChheEEEcCcCcch--HHHHHHHHHH
Confidence 0 00000 000 0 00000000 01123332 22222 69999999999987 5678899999
Q ss_pred HHcCCcEEEEEeCCCCccCCCC----CchHHHHHHHHHHHHH
Q 005093 675 REKGVETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKK 712 (715)
Q Consensus 675 ~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~ 712 (715)
++++.+++++++++++|.+... ....++++.+.+||++
T Consensus 269 ~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 269 RRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 9999999999999999987642 2345678889999875
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=191.18 Aligned_cols=230 Identities=13% Similarity=0.097 Sum_probs=151.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..+.++++.|. ..++.|+||++||.+... ...+......|+++||.|+++|+|| +|.+...... ...
T Consensus 176 ~g~~l~~~~~~P~---~~~~~P~vv~~hG~~~~~-~~~~~~~~~~l~~~G~~V~~~D~~G---~G~s~~~~~~----~~~ 244 (415)
T 3mve_A 176 EKGKITAHLHLTN---TDKPHPVVIVSAGLDSLQ-TDMWRLFRDHLAKHDIAMLTVDMPS---VGYSSKYPLT----EDY 244 (415)
T ss_dssp SSSEEEEEEEESC---SSSCEEEEEEECCTTSCG-GGGHHHHHHTTGGGTCEEEEECCTT---SGGGTTSCCC----SCT
T ss_pred CCEEEEEEEEecC---CCCCCCEEEEECCCCccH-HHHHHHHHHHHHhCCCEEEEECCCC---CCCCCCCCCC----CCH
Confidence 6788999999997 356789999999965432 2234445677889999999999999 5554321111 111
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh-cc-CCCCCCceeeeccCCC
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-VG-TTDIPDWCYVESYGSK 618 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~ 618 (715)
......+++++.....+|.++|+|+|||+||++++.++..+|++++++|+++|+++.... .. ....+. .+...+..
T Consensus 245 ~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 322 (415)
T 3mve_A 245 SRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPK-MYLDVLAS- 322 (415)
T ss_dssp THHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHHTTSCH-HHHHHHHH-
T ss_pred HHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHHHHhHH-HHHHHHHH-
Confidence 233356778887777788899999999999999999999899999999999998542211 00 000000 00000000
Q ss_pred CCCCCCCCC-Ch-hhHHHHHhcCchhh----ccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC-CCc
Q 005093 619 GKDSFTESP-SV-EDLTRFHSKSPISH----ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVH 691 (715)
Q Consensus 619 ~~~~~~~~~-~~-~~~~~~~~~sp~~~----~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H 691 (715)
.+...+ .. .....+...++... +.++++|+|+++|++|.++|...+..+.+ .+.+++++++++ ..|
T Consensus 323 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~l~~----~~~~~~l~~i~g~~~h 395 (415)
T 3mve_A 323 ---RLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAF----FSTYGKAKKISSKTIT 395 (415)
T ss_dssp ---HTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSCHHHHHHHHH----TBTTCEEEEECCCSHH
T ss_pred ---HhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCCHHHHHHHHH----hCCCceEEEecCCCcc
Confidence 000000 01 11112223333221 35788999999999999999888776554 556789999998 333
Q ss_pred cCCCCCchHHHHHHHHHHHHHhcC
Q 005093 692 GIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
. ...++...+.+||+++|+
T Consensus 396 ~-----~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 396 Q-----GYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp H-----HHHHHHHHHHHHHHHHHT
T ss_pred c-----chHHHHHHHHHHHHHHhc
Confidence 2 345788899999999874
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=174.38 Aligned_cols=198 Identities=15% Similarity=0.114 Sum_probs=141.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCC-CCC----
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-GKV---- 536 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~-~~~---- 536 (715)
+.++...++.|. ..+.|+||++||++.. ...|......|++ ||.|+++|.++..+.|..+..... ...
T Consensus 15 ~~~l~~~~~~~~----~~~~p~vv~lHG~g~~--~~~~~~~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~~~~~~~~ 87 (223)
T 3b5e_A 15 DLAFPYRLLGAG----KESRECLFLLHGSGVD--ETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKS 87 (223)
T ss_dssp SSSSCEEEESTT----SSCCCEEEEECCTTBC--TTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHH
T ss_pred CCCceEEEeCCC----CCCCCEEEEEecCCCC--HHHHHHHHHhcCC-CceEEEeCCCCCcCCccccccccCCCcccHHH
Confidence 344554555443 2334999999996654 3466777777865 999999998763221222211100 000
Q ss_pred CccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccC
Q 005093 537 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 616 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (715)
.....+++.++++++.++..++.++++|+|||+||.+++.++.++|++++++|+++|.....
T Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~------------------ 149 (223)
T 3b5e_A 88 ILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD------------------ 149 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCcc------------------
Confidence 01124566677777776645788999999999999999999999999999999999864210
Q ss_pred CCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCC
Q 005093 617 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 696 (715)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 696 (715)
. . .....+++|+|+++|++|..+|.+.+. +++.+++.+.++++++++ ++|.+.
T Consensus 150 ~---------~--------------~~~~~~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~-- 202 (223)
T 3b5e_A 150 H---------V--------------PATDLAGIRTLIIAGAADETYGPFVPA-LVTLLSRHGAEVDARIIP-SGHDIG-- 202 (223)
T ss_dssp S---------C--------------CCCCCTTCEEEEEEETTCTTTGGGHHH-HHHHHHHTTCEEEEEEES-CCSCCC--
T ss_pred c---------c--------------ccccccCCCEEEEeCCCCCcCCHHHHH-HHHHHHHCCCceEEEEec-CCCCcC--
Confidence 0 0 012335689999999999999999999 999999999999999999 999875
Q ss_pred CchHHHHHHHHHHHHHhc
Q 005093 697 QSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 697 ~~~~~~~~~i~~wl~~~l 714 (715)
.+..+.+.+||++.+
T Consensus 203 ---~~~~~~i~~~l~~~~ 217 (223)
T 3b5e_A 203 ---DPDAAIVRQWLAGPI 217 (223)
T ss_dssp ---HHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHHhhh
Confidence 244678999998654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=200.03 Aligned_cols=317 Identities=12% Similarity=0.077 Sum_probs=196.2
Q ss_pred ccceEEeeCCCCceEEEEecCCCC--CCeEEEEe-cCCccEEEEecCcccc---------------ccccCCCcccceee
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVH---------------GSVYADGWFEGISW 104 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~w 104 (715)
..+..++|||||++|||....+++ ...++.++ .+++..+++....... ..+.+...+..++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 457899999999999999873311 33566666 6777777765422110 00000012378999
Q ss_pred cCCCCeEEEEeecCCCCCCCccCCCCC--CCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCC
Q 005093 105 NSDETLIAYVAEEPSPSKPTFSLGSTK--GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 182 (715)
Q Consensus 105 SpDg~~la~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~ 182 (715)
||||++|+|.+. .....+...... ................|.|| |..++.....+|++||+++++.++++ ..
T Consensus 117 SpDg~~l~~~~~---~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPD-G~~la~~~~~~i~~~d~~~g~~~~~~--~~ 190 (741)
T 2ecf_A 117 SPDAQRLLFPLG---GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPK-GGFVSFIRGRNLWVIDLASGRQMQLT--AD 190 (741)
T ss_dssp CTTSSEEEEEET---TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTT-SSEEEEEETTEEEEEETTTTEEEECC--CC
T ss_pred CCCCCEEEEEeC---CcEEEEECCCCCcceEEEcccCCcccccccCCCC-CCEEEEEeCCcEEEEecCCCCEEEec--cC
Confidence 999999999865 111122221110 11111112223345678888 66666656679999999999988884 22
Q ss_pred CCc-----------------cceEEEecCCCCCccEEEEEeecCcccee------------eeeeee------cCCceEE
Q 005093 183 SLS-----------------VGQVVWAPLNEGLHQYLVFVGWSSETRKL------------GIKYCY------NRPCALY 227 (715)
Q Consensus 183 ~~~-----------------~~~~~~spdg~~~~~~i~~~~~~~~~~~~------------g~~~~~------~~~~~i~ 227 (715)
... ...+.|||||+. |+|.......... .....+ +....|+
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~----l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA----IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTSSC----EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred CccceeccccceeeeeccccccceEECCCCCE----EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 211 367899999999 9998643211000 000000 1123788
Q ss_pred EEecccccchhhhhhhhccCCCC-CCceecCC---CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCC
Q 005093 228 AVRVSLYKSEASELELKESSSED-LPVVNLTE---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 303 (715)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lt~---~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 303 (715)
++|+ .+ ++.+.+.. ....+..++| |||++|++.+.... ....+|+++|+.++
T Consensus 267 ~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~------~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 267 VISP-----------------AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD------QKKLDLVEVTLASN 322 (741)
T ss_dssp EECS-----------------STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT------SSEEEEEEEETTTC
T ss_pred EEEC-----------------CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc------CCeEEEEEEECCCC
Confidence 9997 67 77666653 3345788999 99999999886432 23467999999887
Q ss_pred CCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeE-
Q 005093 304 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWS- 382 (715)
Q Consensus 304 ~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~- 382 (715)
+.+.+..... . .|......+.|+|||+ +++++...+..+||.+|+.++ .+.++.....+...
T Consensus 323 ~~~~~~~~~~----------~-----~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~ 385 (741)
T 2ecf_A 323 QQRVLAHETS----------P-----TWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELL 385 (741)
T ss_dssp CEEEEEEEEC----------S-----SCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEE
T ss_pred ceEEEEEcCC----------C-----CcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEe
Confidence 6544332110 0 0111235778999999 777777777789999998766 77787665433333
Q ss_pred EEeecCCEEEEEEeCCCC-CCeEEEEeec
Q 005093 383 LLTLDGDNIIAVSSSPVD-VPQVKYGYFV 410 (715)
Q Consensus 383 ~~s~~~~~l~~~~~~~~~-p~~l~~~~~~ 410 (715)
.|+++++.|++....... ...||.++..
T Consensus 386 ~~s~dg~~l~~~~~~~~~~~~~l~~~~~~ 414 (741)
T 2ecf_A 386 AVDEKAGLAYFRAGIESARESQIYAVPLQ 414 (741)
T ss_dssp EEETTTTEEEEEECSSCTTCBEEEEEETT
T ss_pred EEeCCCCEEEEEEeCCCCceEEEEEEEcC
Confidence 589999998887754321 3356666643
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-19 Score=173.15 Aligned_cols=196 Identities=13% Similarity=0.149 Sum_probs=144.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEE--cCCCCCCCchhhh-h-cCCCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIV--NYRGSLGFGEEAL-Q-SLPGKV 536 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~--d~rG~~~~g~~~~-~-~~~~~~ 536 (715)
+|..+. ++.|. ..++.|+||++||++.. ...|...+..|++ ||.|+++ |++| +|.+.. . .....+
T Consensus 23 ~~~~~~--~~~~~---~~~~~~~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~~~d~~g---~g~s~~~~~~~~~~~ 91 (226)
T 2h1i_A 23 NAMMKH--VFQKG---KDTSKPVLLLLHGTGGN--ELDLLPLAEIVDS-EASVLSVRGNVLE---NGMPRFFRRLAEGIF 91 (226)
T ss_dssp HSSSCE--EEECC---SCTTSCEEEEECCTTCC--TTTTHHHHHHHHT-TSCEEEECCSEEE---TTEEESSCEEETTEE
T ss_pred CCceeE--EecCC---CCCCCcEEEEEecCCCC--hhHHHHHHHHhcc-CceEEEecCcccC---CcchhhccccCccCc
Confidence 344453 45554 22578999999997655 4467778888877 9999999 7777 443210 0 000111
Q ss_pred C----ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceee
Q 005093 537 G----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 612 (715)
Q Consensus 537 ~----~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 612 (715)
. ..++.++.++++++.+...++.++++++|||+||.+++.++.++|++++++|+++|......
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------- 158 (226)
T 2h1i_A 92 DEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG------------- 158 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS-------------
T ss_pred ChhhHHHHHHHHHHHHHHHHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc-------------
Confidence 1 11234556666666777667889999999999999999999999999999999998753210
Q ss_pred eccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc
Q 005093 613 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692 (715)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 692 (715)
.......++|+|+++|++|..++.+.+..+++.+.+.+.++++ ++++++|.
T Consensus 159 ----------------------------~~~~~~~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~ 209 (226)
T 2h1i_A 159 ----------------------------MQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTM-HWENRGHQ 209 (226)
T ss_dssp ----------------------------CCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEE-EEESSTTS
T ss_pred ----------------------------cccccccCCcEEEEeCCCCCcCCHHHHHHHHHHHHhcCCeEEE-EeCCCCCC
Confidence 0111234689999999999999999999999999988888888 99999998
Q ss_pred CCCCCchHHHHHHHHHHHHHhc
Q 005093 693 IERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 693 ~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+. .+..+.+.+||+++|
T Consensus 210 ~~-----~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 210 LT-----MGEVEKAKEWYDKAF 226 (226)
T ss_dssp CC-----HHHHHHHHHHHHHHC
T ss_pred CC-----HHHHHHHHHHHHHhC
Confidence 74 467789999998875
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=178.95 Aligned_cols=198 Identities=19% Similarity=0.211 Sum_probs=141.4
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhC--CcEEEEEcCCC---CCCCchhhhhc--CCCCCCcc-
Q 005093 468 IFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRG---SLGFGEEALQS--LPGKVGSQ- 539 (715)
Q Consensus 468 ~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~--G~~vi~~d~rG---~~~~g~~~~~~--~~~~~~~~- 539 (715)
+...|. .+.++.|+||++||.+.+ ...|...++.|+.+ ++.+++|+-+. ..+.|..|... ........
T Consensus 55 y~~~p~--~~~~~~plVI~LHG~G~~--~~~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~~~~~~~ 130 (285)
T 4fhz_A 55 FGRRGA--APGEATSLVVFLHGYGAD--GADLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSETAA 130 (285)
T ss_dssp EEEEES--CTTCCSEEEEEECCTTBC--HHHHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHCCCHHHH
T ss_pred eecCCC--CCCCCCcEEEEEcCCCCC--HHHHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccCcccchh
Confidence 344554 367889999999995433 33455556667654 88999987431 12234433210 00000001
Q ss_pred ------chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeee
Q 005093 540 ------DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 613 (715)
Q Consensus 540 ------~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 613 (715)
...++.+.++.+.++..+|++||+|+|+|+||.+++.++.++|++++++|++++...
T Consensus 131 ~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~----------------- 193 (285)
T 4fhz_A 131 AEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLL----------------- 193 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCS-----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCcc-----------------
Confidence 123455666666666669999999999999999999999999999999998887421
Q ss_pred ccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 614 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
...... .....++|+|++||+.|++||++.++++++.|+++|.++++++|++.||++
T Consensus 194 --------------~~~~~~---------~~~~~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~~y~g~gH~i 250 (285)
T 4fhz_A 194 --------------APERLA---------EEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMKGTGHGI 250 (285)
T ss_dssp --------------CHHHHH---------HHCCCCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEETTCCSSC
T ss_pred --------------Cchhhh---------hhhhhcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Confidence 001100 112346899999999999999999999999999999999999999999987
Q ss_pred CCCCchHHHHHHHHHHHHHhc
Q 005093 694 ERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 694 ~~~~~~~~~~~~i~~wl~~~l 714 (715)
. .+.++.+.+||+++|
T Consensus 251 ~-----~~~l~~~~~fL~~~L 266 (285)
T 4fhz_A 251 A-----PDGLSVALAFLKERL 266 (285)
T ss_dssp C-----HHHHHHHHHHHHHHC
T ss_pred C-----HHHHHHHHHHHHHHC
Confidence 4 356788999999987
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-18 Score=171.75 Aligned_cols=265 Identities=15% Similarity=0.142 Sum_probs=183.9
Q ss_pred cccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cC-CccEEEEecCcc
Q 005093 11 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-SQLEKEFHVPQT 88 (715)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 88 (715)
.+.....|+++|+.++. ..++...+ +.+..++|||||++|++..+. .++.++ .+ ++...+......
T Consensus 17 ~~~~~~~i~~~d~~~~~--~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~ 84 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK--MRVVWQTP-----ELFEAPNWSPDGKYLLLNSEG-----LLYRLSLAGDPSPEKVDTGFAT 84 (297)
T ss_dssp -CCCCEEEEEEETTTTE--EEEEEEES-----SCCEEEEECTTSSEEEEEETT-----EEEEEESSSCCSCEECCCTTCC
T ss_pred CCCcceeEEEEeCCCCc--eeeeccCC-----cceEeeEECCCCCEEEEEcCC-----eEEEEeCCCCCCceEecccccc
Confidence 45577889998776543 23343332 668999999999999997532 566665 55 555544432110
Q ss_pred ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEE
Q 005093 89 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 168 (715)
Q Consensus 89 ~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (715)
..+..+.|||||++|++...... ....||.++
T Consensus 85 --------~~~~~~~~spdg~~l~~~~~~~~----------------------------------------~~~~l~~~~ 116 (297)
T 2ojh_A 85 --------ICNNDHGISPDGALYAISDKVEF----------------------------------------GKSAIYLLP 116 (297)
T ss_dssp --------CBCSCCEECTTSSEEEEEECTTT----------------------------------------SSCEEEEEE
T ss_pred --------ccccceEECCCCCEEEEEEeCCC----------------------------------------CcceEEEEE
Confidence 12368999999999999764320 237899999
Q ss_pred ccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCC
Q 005093 169 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 248 (715)
Q Consensus 169 ~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (715)
+++++.+.+. ... ....+.|+|||+. |+|+...++ ...||.+++
T Consensus 117 ~~~~~~~~~~--~~~-~~~~~~~spdg~~----l~~~~~~~~------------~~~l~~~~~----------------- 160 (297)
T 2ojh_A 117 STGGTPRLMT--KNL-PSYWHGWSPDGKS----FTYCGIRDQ------------VFDIYSMDI----------------- 160 (297)
T ss_dssp TTCCCCEECC--SSS-SEEEEEECTTSSE----EEEEEEETT------------EEEEEEEET-----------------
T ss_pred CCCCceEEee--cCC-CccceEECCCCCE----EEEEECCCC------------ceEEEEEEC-----------------
Confidence 9998888773 322 3667899999999 998774322 237888886
Q ss_pred CCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcc
Q 005093 249 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 328 (715)
Q Consensus 249 ~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~ 328 (715)
.++....++........+.|||||+.|++.+..+ ....||.+++.++....++....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~--------------- 217 (297)
T 2ojh_A 161 DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRT--------GQMQIWRVRVDGSSVERITDSAY--------------- 217 (297)
T ss_dssp TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTT--------SSCEEEEEETTSSCEEECCCCSE---------------
T ss_pred CCCcceEcccCCCccccceECCCCCEEEEEecCC--------CCccEEEECCCCCCcEEEecCCc---------------
Confidence 6777788887777788999999999999988653 23568888876655444432211
Q ss_pred ccccCCCCCCccccCCCEEEEEeeeC--------CeeEEEEEECCCCcEEEecC---CCCCceeEEEeecCCEEEEEEeC
Q 005093 329 GLYSSSILSNPWLSDGCTMLLSSIWG--------SSQVIISVNVSSGELLRITP---AESNFSWSLLTLDGDNIIAVSSS 397 (715)
Q Consensus 329 g~~~~~~~~~~~~~dg~~l~~~~~~~--------~~~~l~~~d~~tg~~~~l~~---~~~~~~~~~~s~~~~~l~~~~~~ 397 (715)
....+.|+|||+.|++.+... ....|+.+|+.+++.+.+.. ....+....|+++++.|++....
T Consensus 218 -----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 218 -----GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp -----EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred -----ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 123467999999888887754 34679999999988766653 23334446789999999888765
Q ss_pred CC
Q 005093 398 PV 399 (715)
Q Consensus 398 ~~ 399 (715)
..
T Consensus 293 ~~ 294 (297)
T 2ojh_A 293 PV 294 (297)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-19 Score=164.34 Aligned_cols=174 Identities=11% Similarity=0.146 Sum_probs=129.4
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
++.|+||++||.+.......+......|+++||.|+++|+|| +|.+.... ......+++.++++++.+.. +
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g---~g~s~~~~----~~~~~~~~~~~~~~~~~~~~--~ 72 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTD---LDARRDLG----QLGDVRGRLQRLLEIARAAT--E 72 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCCCHH---HHTCGGGC----TTCCHHHHHHHHHHHHHHHH--T
T ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeCCCC---CCCCCCCC----CCCCHHHHHHHHHHHHHhcC--C
Confidence 467899999997655433344477888999999999999999 44432111 11112344555666776653 4
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhc
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 638 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (715)
.++++++|||+||.+++.++.++| ++++|+++|....... +
T Consensus 73 ~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~--------------------------~----------- 113 (176)
T 2qjw_A 73 KGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPL--------------------------P----------- 113 (176)
T ss_dssp TSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTB--------------------------C-----------
T ss_pred CCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcccc--------------------------C-----------
Confidence 579999999999999999999888 9999999886542100 0
Q ss_pred CchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 639 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 639 sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
.+.++++|+|+++|++|..+|.+.+..+++.+ +++++++ +++|.+. +...++.+.+.+|+++
T Consensus 114 ----~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~-~~~H~~~--~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 114 ----ALDAAAVPISIVHAWHDELIPAADVIAWAQAR-----SARLLLV-DDGHRLG--AHVQAASRAFAELLQS 175 (176)
T ss_dssp ----CCCCCSSCEEEEEETTCSSSCHHHHHHHHHHH-----TCEEEEE-SSCTTCT--TCHHHHHHHHHHHHHT
T ss_pred ----cccccCCCEEEEEcCCCCccCHHHHHHHHHhC-----CceEEEe-CCCcccc--ccHHHHHHHHHHHHHh
Confidence 04567899999999999999999998888877 3678888 8999873 5566788888888865
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-19 Score=179.89 Aligned_cols=216 Identities=17% Similarity=0.192 Sum_probs=146.3
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHHhCCcEEEEEcCCCCCC---------C--ch
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLG---------F--GE 526 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~-~~~~~~la~~G~~vi~~d~rG~~~---------~--g~ 526 (715)
..++.++.+++|.|++. .++.|+||++||+++.. ..| ......++++||.|+++|+|+... + |.
T Consensus 34 ~~~~~~l~~~~~~P~~~--~~~~p~vv~lHG~~~~~--~~~~~~~~~~l~~~g~~v~~~d~~~~~~p~~~~~~~g~~~g~ 109 (304)
T 3d0k_A 34 RNADRPFTLNTYRPYGY--TPDRPVVVVQHGVLRNG--ADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTA 109 (304)
T ss_dssp -CTTCCEEEEEEECTTC--CTTSCEEEEECCTTCCH--HHHHHHTHHHHHHHTCEEEEEECCTTTSCHHHHTTTTTCBCT
T ss_pred CCCCceEEEEEEeCCCC--CCCCcEEEEeCCCCCCH--HHHHHHHHHHHHHCCcEEEEeCCccccCCCccccccCccccc
Confidence 56788999999999753 34679999999977653 344 445677889999999999996411 1 11
Q ss_pred hhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC-ceeEEEecC-CcchhhhhccCC
Q 005093 527 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARN-PLCNLALMVGTT 604 (715)
Q Consensus 527 ~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~-~~~~~~~~~~~~ 604 (715)
+. .+.......++|+.++++++.++..+|.++|+|+|||+||.+++.++.++|+ +++++|+.+ |..++....
T Consensus 110 s~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~~~~~~~~--- 183 (304)
T 3d0k_A 110 AG---NPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLPTFE--- 183 (304)
T ss_dssp TS---CBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSSCCCSSTT---
T ss_pred cC---CCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCcccccCCcc---
Confidence 10 0111112345789999999998866889999999999999999999999995 788888655 544321110
Q ss_pred CCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCC-----------------chHH
Q 005093 605 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP-----------------VSNG 667 (715)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~-----------------~~~~ 667 (715)
..+ .++. ... ..+|......+.+|+|++||+.|..+. .+.+
T Consensus 184 --~~~----~~~~------~~~----------~~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~~ 241 (304)
T 3d0k_A 184 --HRF----PEGL------DGV----------GLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARA 241 (304)
T ss_dssp --SBT----TTSS------BTT----------TCCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSHHHHH
T ss_pred --ccC----cccc------CCC----------CCCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccHHHHH
Confidence 000 0000 000 012323333446899999999999742 2345
Q ss_pred HHHHHHHH----HcCCc--EEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 668 LQYARALR----EKGVE--TKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 668 ~~~~~~l~----~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
..+++.++ +.+.+ ++++++|+++|.+. .....+.+||..
T Consensus 242 ~~~~~~l~~~a~~~g~~~~~~~~~~pg~gH~~~------~~~~~~~~~~~~ 286 (304)
T 3d0k_A 242 RHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDGQ------AMSQVCASLWFD 286 (304)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEEEETTCCSCHH------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEeCCCCCchH------HHHHHHHHHHhh
Confidence 56677665 66776 99999999999873 456678887754
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=169.99 Aligned_cols=195 Identities=17% Similarity=0.156 Sum_probs=137.6
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhC-----CcEEEEEcCCCCC------CCchhhhhcC----CCCCCccch
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-----GYSLLIVNYRGSL------GFGEEALQSL----PGKVGSQDV 541 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~-----G~~vi~~d~rG~~------~~g~~~~~~~----~~~~~~~~~ 541 (715)
..++.|+||++||.+.. ...|...+..|+.+ |+.|+++|.++.. ..+..|.... ........+
T Consensus 19 ~~~~~p~vv~lHG~g~~--~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 96 (239)
T 3u0v_A 19 AGRHSASLIFLHGSGDS--GQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESI 96 (239)
T ss_dssp SSCCCEEEEEECCTTCC--HHHHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHH
T ss_pred CCCCCcEEEEEecCCCc--hhhHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhH
Confidence 34678999999996544 44566677777665 7999999976421 1111111100 000111234
Q ss_pred hhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCC
Q 005093 542 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 618 (715)
Q Consensus 542 ~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (715)
+++.+.+..+++. ..++.++++|+|||+||.+++.++.++|++++++|+++|..+...
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------- 157 (239)
T 3u0v_A 97 DVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKAS------------------- 157 (239)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTC-------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchh-------------------
Confidence 4444444444432 346889999999999999999999999999999999998653210
Q ss_pred CCCCCCCCCChhhHHHHHhcCchhhccCCCCc-EEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCC
Q 005093 619 GKDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 697 (715)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 697 (715)
....... .....+| +|+++|++|..+|.+.+..+++.+++.+.+++++++++++|.+.
T Consensus 158 -----------~~~~~~~-------~~~~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~--- 216 (239)
T 3u0v_A 158 -----------AVYQALQ-------KSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELS--- 216 (239)
T ss_dssp -----------HHHHHHH-------HCCSCCCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCC---
T ss_pred -----------HHHHHHH-------hhccCCCCEEEEeeCCCCccCHHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC---
Confidence 0001110 1233456 99999999999999999999999999999999999999999886
Q ss_pred chHHHHHHHHHHHHHhcC
Q 005093 698 SDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 698 ~~~~~~~~i~~wl~~~l~ 715 (715)
.+..+.+.+||+++|.
T Consensus 217 --~~~~~~~~~~l~~~l~ 232 (239)
T 3u0v_A 217 --KTELDILKLWILTKLP 232 (239)
T ss_dssp --HHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHhCC
Confidence 4678899999998863
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-18 Score=172.36 Aligned_cols=230 Identities=13% Similarity=0.157 Sum_probs=143.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cc-hHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-~~-~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
+|.++ .+|.|++ ++.|+||++|||++..+.. .+ ......+++.||.|+++|||+.+++ ...
T Consensus 13 ~~~~~--~~y~p~~----~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~-----------~~p 75 (274)
T 2qru_A 13 NGATV--TIYPTTT----EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT-----------KID 75 (274)
T ss_dssp TSCEE--EEECCSS----SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS-----------CHH
T ss_pred CCeeE--EEEcCCC----CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC-----------CCc
Confidence 45555 4777752 5689999999998765433 33 3456678889999999999986543 112
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHh---hCCCceeEEEecCCcchhhhhccCCC-CCCceeeec
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG---QAPDKFVAAAARNPLCNLALMVGTTD-IPDWCYVES 614 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~---~~p~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~ 614 (715)
..++|+.++++|+.++.. +.++|+|+|+|+||.+|+.++. ..+.+++++++.+|..+......... .........
T Consensus 76 ~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (274)
T 2qru_A 76 HILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQAISAKE 154 (274)
T ss_dssp HHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSSCCCSGG
T ss_pred HHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhccccccHHH
Confidence 348999999999998742 2689999999999999999887 35778899999888776221110000 000000000
Q ss_pred cCCC-CCCCCCCCCC---hhh---------HHHHHhc--------Cch--hhccCCCCcEEEEeeCCCCcCCchHHHHHH
Q 005093 615 YGSK-GKDSFTESPS---VED---------LTRFHSK--------SPI--SHISKVKTPTIFLLGAQDLRVPVSNGLQYA 671 (715)
Q Consensus 615 ~~~~-~~~~~~~~~~---~~~---------~~~~~~~--------sp~--~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~ 671 (715)
.... .......... ... ...+... .++ ..+..+ +|+||++|+.|..++..++.++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-pP~li~~G~~D~~~~~~~~~~l~ 233 (274)
T 2qru_A 155 IAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTF-PPCFSTASSSDEEVPFRYSKKIG 233 (274)
T ss_dssp GTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTS-CCEEEEEETTCSSSCTHHHHHHH
T ss_pred HhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCC-CCEEEEEecCCCCcCHHHHHHHH
Confidence 0000 0000000000 000 0000000 001 123455 89999999999999887776665
Q ss_pred HHHHHcCCcEEEEEeCCCCccCCCCC---chHHHHHHHHHHHHHh
Q 005093 672 RALREKGVETKVIVFPNDVHGIERPQ---SDFESFLNIGLWFKKY 713 (715)
Q Consensus 672 ~~l~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~i~~wl~~~ 713 (715)
+++ .+++++++++++|++.... ...++.+.+.+||+++
T Consensus 234 ~~~----~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~~ 274 (274)
T 2qru_A 234 RTI----PESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKER 274 (274)
T ss_dssp HHS----TTCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHTC
T ss_pred HhC----CCcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhhC
Confidence 544 4689999999999985421 2235678899999764
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-19 Score=175.71 Aligned_cols=190 Identities=17% Similarity=0.159 Sum_probs=138.4
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEE--cCCCCCCCchhhhhcC-CCCCC----ccc
Q 005093 468 IFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIV--NYRGSLGFGEEALQSL-PGKVG----SQD 540 (715)
Q Consensus 468 ~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~--d~rG~~~~g~~~~~~~-~~~~~----~~~ 540 (715)
+++.|. .++.|+||++||++.. ...|...+..|++ +|.|+++ |++|.++++ +.... ..... ...
T Consensus 53 ~~~~~~----~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~ 123 (251)
T 2r8b_A 53 HKSRAG----VAGAPLFVLLHGTGGD--ENQFFDFGARLLP-QATILSPVGDVSEHGAAR--FFRRTGEGVYDMVDLERA 123 (251)
T ss_dssp EEEECC----CTTSCEEEEECCTTCC--HHHHHHHHHHHST-TSEEEEECCSEEETTEEE--SSCBCGGGCBCHHHHHHH
T ss_pred EEEeCC----CCCCcEEEEEeCCCCC--HhHHHHHHHhcCC-CceEEEecCCcCCCCCcc--cccCCCCCcCCHHHHHHH
Confidence 355554 2578999999996644 4467777778866 4999999 677743221 10000 00011 112
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCC
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 620 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (715)
++|+.++++++.++. +.++++|+|||+||.+++.++.++|++++++|+++|......
T Consensus 124 ~~~~~~~l~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~--------------------- 180 (251)
T 2r8b_A 124 TGKMADFIKANREHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP--------------------- 180 (251)
T ss_dssp HHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC---------------------
T ss_pred HHHHHHHHHHHHhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc---------------------
Confidence 567777777776653 678999999999999999999999999999999998753210
Q ss_pred CCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchH
Q 005093 621 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 700 (715)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 700 (715)
......+++|+|+++|++|..++++.+.++++.+++++.++++ .+++++|.+. .
T Consensus 181 --------------------~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~ 234 (251)
T 2r8b_A 181 --------------------KISPAKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVET-VWHPGGHEIR-----S 234 (251)
T ss_dssp --------------------CCCCCCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEE-EEESSCSSCC-----H
T ss_pred --------------------cccccccCCcEEEeccCCCccCCHHHHHHHHHHHHHcCCeEEE-EecCCCCccC-----H
Confidence 0012345789999999999999999999999999987888777 5667899874 4
Q ss_pred HHHHHHHHHHHHhcC
Q 005093 701 ESFLNIGLWFKKYCK 715 (715)
Q Consensus 701 ~~~~~i~~wl~~~l~ 715 (715)
+..+.+.+||+++|+
T Consensus 235 ~~~~~~~~~l~~~l~ 249 (251)
T 2r8b_A 235 GEIDAVRGFLAAYGG 249 (251)
T ss_dssp HHHHHHHHHHGGGC-
T ss_pred HHHHHHHHHHHHhcC
Confidence 567889999999874
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-19 Score=179.32 Aligned_cols=237 Identities=10% Similarity=0.070 Sum_probs=142.7
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
...+|..++++.+.|.+. ..++.|+||++||.+.. ...|...+..|+++||.|+++|+||.. |.+... ...+.
T Consensus 13 ~~~dG~~l~~~~~~p~~~-~~~~~~~VvllHG~g~~--~~~~~~~~~~L~~~G~~Vi~~D~rGh~--G~S~~~--~~~~~ 85 (305)
T 1tht_A 13 RVNNGQELHVWETPPKEN-VPFKNNTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHV--GLSSGS--IDEFT 85 (305)
T ss_dssp EETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGG--GGGGHHHHHHHHTTTCCEEEECCCBCC------------CCC
T ss_pred EcCCCCEEEEEEecCccc-CCCCCCEEEEecCCccC--chHHHHHHHHHHHCCCEEEEeeCCCCC--CCCCCc--cccee
Confidence 345788899888877531 12356899999995543 457888999999999999999999931 444211 11121
Q ss_pred c-cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCcee--eec
Q 005093 538 S-QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VES 614 (715)
Q Consensus 538 ~-~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~ 614 (715)
. ...+|+.++++++.+. +.++++|+||||||.+++.+|.+ | +++++|+.++...+...........+.. ...
T Consensus 86 ~~~~~~D~~~~~~~l~~~---~~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (305)
T 1tht_A 86 MTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKALGFDYLSLPIDE 160 (305)
T ss_dssp HHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHHHSSCGGGSCGGG
T ss_pred hHHHHHHHHHHHHHHHhC---CCCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHHhhhhhhhcchhh
Confidence 1 1256778888888754 34789999999999999999987 7 8999999887654321100000000000 000
Q ss_pred cCCCCCCCCCCCC--ChhhHHHHHhc------CchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEe
Q 005093 615 YGSKGKDSFTESP--SVEDLTRFHSK------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 686 (715)
Q Consensus 615 ~~~~~~~~~~~~~--~~~~~~~~~~~------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (715)
... .. .+.... ........... +....+.++++|+|+++|++|..+|++.+..+++.+. ...++++++
T Consensus 161 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp~~~~~~l~~~i~--~~~~~l~~i 236 (305)
T 1tht_A 161 LPN-DL-DFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIR--TGHCKLYSL 236 (305)
T ss_dssp CCS-EE-EETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCT--TCCEEEEEE
T ss_pred Ccc-cc-cccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhcC--CCCcEEEEe
Confidence 000 00 000000 00000111111 1234577899999999999999999988777665542 235789999
Q ss_pred CCCCccCCCCCc--hHHHHHHHHHHHH
Q 005093 687 PNDVHGIERPQS--DFESFLNIGLWFK 711 (715)
Q Consensus 687 ~~~~H~~~~~~~--~~~~~~~i~~wl~ 711 (715)
+++||.+. .+. ..+++..+.+|..
T Consensus 237 ~~agH~~~-e~p~~~~~fl~~~~~~~~ 262 (305)
T 1tht_A 237 LGSSHDLG-ENLVVLRNFYQSVTKAAI 262 (305)
T ss_dssp TTCCSCTT-SSHHHHHHHHHHHHHHHH
T ss_pred CCCCCchh-hCchHHHHHHHHHHHHHH
Confidence 99999875 222 2234444555543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-18 Score=196.66 Aligned_cols=297 Identities=12% Similarity=0.056 Sum_probs=184.8
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCC-----CeEEEEe-cCCccEEEEecCcc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENES-----PIQFELW-SQSQLEKEFHVPQT 88 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~ 88 (715)
...|+++|+.++.. .++.... ......+..++|||||++|||..+.++.. ..++..+ .+++.+++......
T Consensus 36 dg~i~~~d~~~g~~--~~~~~~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 112 (723)
T 1xfd_A 36 KGTVRLWNVETNTS--TVLIEGK-KIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (723)
T ss_dssp SSCEEEBCGGGCCC--EEEECTT-TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred CCCEEEEECCCCcE--EEEeccc-cccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccc
Confidence 34788877766643 3332221 00001478899999999999997654221 4566555 56665444432211
Q ss_pred ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEE
Q 005093 89 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 168 (715)
Q Consensus 89 ~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (715)
. ..+..++|||||++|||.+. .+|+++|
T Consensus 113 -~------~~~~~~~~SPdG~~la~~~~---------------------------------------------~~i~~~~ 140 (723)
T 1xfd_A 113 -N------AKLQYAGWGPKGQQLIFIFE---------------------------------------------NNIYYCA 140 (723)
T ss_dssp -S------CCCSBCCBCSSTTCEEEEET---------------------------------------------TEEEEES
T ss_pred -c------ccccccEECCCCCEEEEEEC---------------------------------------------CeEEEEE
Confidence 0 11268999999999999732 4699999
Q ss_pred ccCCceEeecCCCCCCc------------------cceEEEecCCCCCccEEEEEeecCcccee-------------eee
Q 005093 169 INSGEVQAVKGIPKSLS------------------VGQVVWAPLNEGLHQYLVFVGWSSETRKL-------------GIK 217 (715)
Q Consensus 169 ~~~g~~~~l~~~~~~~~------------------~~~~~~spdg~~~~~~i~~~~~~~~~~~~-------------g~~ 217 (715)
+++++.++++ ...... ...+.|||||+. |+|.+......+. ...
T Consensus 141 ~~~g~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~----la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (723)
T 1xfd_A 141 HVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR----LAYAAINDSRVPIMELPTYTGSIYPTVKP 215 (723)
T ss_dssp SSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE----EEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred CCCCceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCE----EEEEEECCCccceEEeeccCCcCCCccee
Confidence 9999888874 111111 257999999999 9998753211000 000
Q ss_pred eee------cCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCC------CccccceeEcCCCCeEEEEecCCCC
Q 005093 218 YCY------NRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES------ISSAFFPRFSPDGKFLVFLSAKSSV 284 (715)
Q Consensus 218 ~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~------~~~~~~~~~spdg~~l~~~~~~~~~ 284 (715)
..+ +....|+++|+ .+++. ..++.. ...+..+.|||||+.|++...+.
T Consensus 216 ~~~~~~G~~~~~~~l~~~d~-----------------~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-- 276 (723)
T 1xfd_A 216 YHYPKAGSENPSISLHVIGL-----------------NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA-- 276 (723)
T ss_dssp EECCBTTSCCCEEEEEEEES-----------------SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT--
T ss_pred ccCCCCCCCCCeeEEEEEEC-----------------CCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC--
Confidence 000 11237999997 66663 666654 34577899999999887776653
Q ss_pred CCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCC-CCCCccccCCCEEEEE-eeeCC----eeE
Q 005093 285 DSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS-ILSNPWLSDGCTMLLS-SIWGS----SQV 358 (715)
Q Consensus 285 ~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~dg~~l~~~-~~~~~----~~~ 358 (715)
.....|+++|+.+++.+.+..... .. |... ...+.|+|||+.|++. +...+ ..+
T Consensus 277 -----~~~~~i~~~d~~~g~~~~~~~~~~----------~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 336 (723)
T 1xfd_A 277 -----QNVSILTLCDATTGVCTKKHEDES----------EA-----WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (723)
T ss_dssp -----SCEEEEEEEETTTCCEEEEEEEEC----------SS-----CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred -----CCeEEEEEEeCCCCcceEEEEecc----------CC-----EEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence 234579999998876533321110 00 1000 1367899999988887 44455 668
Q ss_pred EEEEE-CCCCc---EEEecCCCCCce-eEEEeecCCEEEEEEeCCC-CCCeEEEEeec
Q 005093 359 IISVN-VSSGE---LLRITPAESNFS-WSLLTLDGDNIIAVSSSPV-DVPQVKYGYFV 410 (715)
Q Consensus 359 l~~~d-~~tg~---~~~l~~~~~~~~-~~~~s~~~~~l~~~~~~~~-~p~~l~~~~~~ 410 (715)
||.+| ..+++ .+.++....... ...|+++++.|++...... .-..||.+++.
T Consensus 337 l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred EEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 99999 56777 677775433222 2479999999988775421 33456666654
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-19 Score=174.11 Aligned_cols=184 Identities=15% Similarity=0.060 Sum_probs=136.7
Q ss_pred EEEEecCCCCC-CCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHH
Q 005093 467 AIFVSSSHKKD-CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 545 (715)
Q Consensus 467 ~~l~~P~~~~~-~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~ 545 (715)
+.+|.|..... +++.|+||++||++.. ...|...+..|+++||.|+++|+|++. ...|+.
T Consensus 34 ~~~~~p~~~~~~g~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~~s~-----------------~~~~~~ 94 (258)
T 2fx5_A 34 CRIYRPRDLGQGGVRHPVILWGNGTGAG--PSTYAGLLSHWASHGFVVAAAETSNAG-----------------TGREML 94 (258)
T ss_dssp EEEEEESSTTGGGCCEEEEEEECCTTCC--GGGGHHHHHHHHHHTCEEEEECCSCCT-----------------TSHHHH
T ss_pred EEEEeCCCCcccCCCceEEEEECCCCCC--chhHHHHHHHHHhCCeEEEEecCCCCc-----------------cHHHHH
Confidence 67888874211 3378999999997664 467788899999999999999999631 134555
Q ss_pred HHHHHHHHc---------CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccC
Q 005093 546 TAIDHVIDM---------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 616 (715)
Q Consensus 546 ~~i~~l~~~---------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (715)
.+++++.+. ..++.++++|+||||||.+++.++ .+++++++++++|....
T Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~------------------- 153 (258)
T 2fx5_A 95 ACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLG------------------- 153 (258)
T ss_dssp HHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSS-------------------
T ss_pred HHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCcccc-------------------
Confidence 566666542 235678999999999999999887 46789999988764310
Q ss_pred CCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchH-HHHHHHHHHHcCCcEEEEEeCCCCccCCC
Q 005093 617 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVETKVIVFPNDVHGIER 695 (715)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 695 (715)
.+. ....+.++++|+|+++|++|.++|... +..+++. .+.+++++++++++|.+..
T Consensus 154 ---------~~~-----------~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~H~~~~ 210 (258)
T 2fx5_A 154 ---------LGH-----------DSASQRRQQGPMFLMSGGGDTIAFPYLNAQPVYRR---ANVPVFWGERRYVSHFEPV 210 (258)
T ss_dssp ---------TTC-----------CGGGGGCCSSCEEEEEETTCSSSCHHHHTHHHHHH---CSSCEEEEEESSCCTTSST
T ss_pred ---------ccc-----------chhhhccCCCCEEEEEcCCCcccCchhhHHHHHhc---cCCCeEEEEECCCCCcccc
Confidence 000 012456788999999999999999876 6666655 4467899999999998775
Q ss_pred CCchHHHHHHHHHHHHHhc
Q 005093 696 PQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 696 ~~~~~~~~~~i~~wl~~~l 714 (715)
... ..+.+.+.+||+++|
T Consensus 211 ~~~-~~~~~~i~~fl~~~l 228 (258)
T 2fx5_A 211 GSG-GAYRGPSTAWFRFQL 228 (258)
T ss_dssp TTC-GGGHHHHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHHHHh
Confidence 443 367889999998765
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=187.46 Aligned_cols=247 Identities=15% Similarity=0.183 Sum_probs=152.3
Q ss_pred cccCCCCceEEEEEEecCCCC--CCCCCcEEEEEcCCCCCCCCccch------HHHHHHHhCCcEEEEEcCCCCCCCchh
Q 005093 456 NLTKGAQKPFEAIFVSSSHKK--DCSCDPLIVVLHGGPHSVSLSSYS------KSLAFLSSVGYSLLIVNYRGSLGFGEE 527 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~--~~~~~P~vv~iHGg~~~~~~~~~~------~~~~~la~~G~~vi~~d~rG~~~~g~~ 527 (715)
.+...+|..+.++.+.|.... +.++.|+||++||.+... ..|. ..+..|+++||.|+++|+|| +|.+
T Consensus 31 ~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~--~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G---~G~S 105 (377)
T 1k8q_A 31 EVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASA--TNWISNLPNNSLAFILADAGYDVWLGNSRG---NTWA 105 (377)
T ss_dssp EEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCG--GGGSSSCTTTCHHHHHHHTTCEEEECCCTT---STTS
T ss_pred EeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCch--hhhhcCCCcccHHHHHHHCCCCEEEecCCC---CCCC
Confidence 344568899998888765211 114679999999966543 2332 34558899999999999999 4444
Q ss_pred hhhcC--CC-----CCCcc-chh-hHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC---ceeEEEecCCcc
Q 005093 528 ALQSL--PG-----KVGSQ-DVN-DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLC 595 (715)
Q Consensus 528 ~~~~~--~~-----~~~~~-~~~-d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~~~~ 595 (715)
..... +. .+... ..+ |+.++++++.+. .+.++++|+||||||.+++.++.++|+ +++++|+++|..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~~~~ 183 (377)
T 1k8q_A 106 RRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVA 183 (377)
T ss_dssp CEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEESCCS
T ss_pred CCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHh--cCcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeCCch
Confidence 32100 00 11111 134 777788888776 245789999999999999999999998 899999999875
Q ss_pred hhhhhccCC---------------C----CCCceeee----cc------------------CC-------CCCCC-CCCC
Q 005093 596 NLALMVGTT---------------D----IPDWCYVE----SY------------------GS-------KGKDS-FTES 626 (715)
Q Consensus 596 ~~~~~~~~~---------------~----~~~~~~~~----~~------------------~~-------~~~~~-~~~~ 626 (715)
......... . .+...... .+ +. ..... +...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (377)
T 1k8q_A 184 TVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYLSHN 263 (377)
T ss_dssp CCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHHTTC
T ss_pred hcccchhHHHHHHhhccHHHHhhcCccccCcHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCCCcccCCHHHHHHHhccC
Confidence 422110000 0 00000000 00 00 00000 0000
Q ss_pred CC---hh------------------------hHHHHHhcC-chhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcC
Q 005093 627 PS---VE------------------------DLTRFHSKS-PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 678 (715)
Q Consensus 627 ~~---~~------------------------~~~~~~~~s-p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g 678 (715)
+. .. ....+.... +...+.++++|+|+++|++|.++|++.+..+++.+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~-- 341 (377)
T 1k8q_A 264 PAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPN-- 341 (377)
T ss_dssp CCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTCTT--
T ss_pred CCCccHHHHHHHHHHHhcCCeeeccCCcchhhHHHcCCCCCcccCHhhCCCCEEEEEeCCCcccCHHHHHHHHHhCcC--
Confidence 00 00 001111111 1233778899999999999999999888777766643
Q ss_pred CcE-EEEEeCCCCccCCC--CCchHHHHHHHHHHHHHh
Q 005093 679 VET-KVIVFPNDVHGIER--PQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 679 ~~~-~~~~~~~~~H~~~~--~~~~~~~~~~i~~wl~~~ 713 (715)
. ++++++++||.... .+...++.+.|.+||+++
T Consensus 342 --~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 377 (377)
T 1k8q_A 342 --LIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp --EEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred --cccEEecCCCCceEEEecCCcHHHHHHHHHHHhccC
Confidence 4 48999999998653 455667899999999864
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-19 Score=187.42 Aligned_cols=249 Identities=18% Similarity=0.214 Sum_probs=153.6
Q ss_pred cccCCCCceEEEEEEecCC---CCCCCCCcEEEEEcCCCCCCCCccchHHHHHHH----hCCc---EEEEEcCCCCCCCc
Q 005093 456 NLTKGAQKPFEAIFVSSSH---KKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS----SVGY---SLLIVNYRGSLGFG 525 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~---~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la----~~G~---~vi~~d~rG~~~~g 525 (715)
++...+|..+++..+.|.+ ..+.++.|+||++||.+.. ...|...+..|+ +.|| .|+++|+|| +|
T Consensus 24 ~~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G---~G 98 (398)
T 2y6u_A 24 TLCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMS--KVVWEYYLPRLVAADAEGNYAIDKVLLIDQVN---HG 98 (398)
T ss_dssp BSSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCC--GGGGGGGGGGSCCCBTTTTEEEEEEEEECCTT---SH
T ss_pred cccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHHHHhhhhcCcceeEEEEEcCCC---CC
Confidence 5567789999999998864 1123456899999996655 456777777887 4589 999999999 77
Q ss_pred hhhhhcCCCCCCccch----hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc
Q 005093 526 EEALQSLPGKVGSQDV----NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 601 (715)
Q Consensus 526 ~~~~~~~~~~~~~~~~----~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~ 601 (715)
.+.............+ +|+.++++.+.....++..+++|+||||||.+++.+|.++|++++++|+++|........
T Consensus 99 ~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 178 (398)
T 2y6u_A 99 DSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRKAI 178 (398)
T ss_dssp HHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCCCCC
T ss_pred CCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEecccccccccc
Confidence 7654221100111223 333333333221111344569999999999999999999999999999999876531100
Q ss_pred c--CCCCCC----c--eee--------eccCCC-----CC--CCCCCCCChhhHHHHHh---------------------
Q 005093 602 G--TTDIPD----W--CYV--------ESYGSK-----GK--DSFTESPSVEDLTRFHS--------------------- 637 (715)
Q Consensus 602 ~--~~~~~~----~--~~~--------~~~~~~-----~~--~~~~~~~~~~~~~~~~~--------------------- 637 (715)
. ...... + .+. ..+... .. ..+.........+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (398)
T 2y6u_A 179 GAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKME 258 (398)
T ss_dssp SCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CCEEESSC
T ss_pred ccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCceEecCC
Confidence 0 000000 0 000 000000 00 00000001111111110
Q ss_pred ---------------cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHH
Q 005093 638 ---------------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFES 702 (715)
Q Consensus 638 ---------------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 702 (715)
.+....+.++++|+|+++|++|.++|++.+..+++.+. .+++++++++||.+... ...++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~~~~~~~~~l~~~~~----~~~~~~~~~~gH~~~~e-~p~~~ 333 (398)
T 2y6u_A 259 QAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKTLQ----NYHLDVIPGGSHLVNVE-APDLV 333 (398)
T ss_dssp HHHHHHTTSCGGGTHHHHHHHGGGCCSEEEEEEETTCCSSCHHHHHHHHHHCS----SEEEEEETTCCTTHHHH-SHHHH
T ss_pred chhhhhhhcccccchHHHHHhccccCCCEEEEEcCCCCCCCHHHHHHHHHhCC----CceEEEeCCCCccchhc-CHHHH
Confidence 01124567889999999999999999988777766653 58899999999976543 45578
Q ss_pred HHHHHHHHHHhc
Q 005093 703 FLNIGLWFKKYC 714 (715)
Q Consensus 703 ~~~i~~wl~~~l 714 (715)
.+.|.+||++++
T Consensus 334 ~~~i~~fl~~~~ 345 (398)
T 2y6u_A 334 IERINHHIHEFV 345 (398)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889999998765
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-19 Score=171.95 Aligned_cols=193 Identities=15% Similarity=0.217 Sum_probs=138.6
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH--HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~--~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
.+|.+++...+.|+ ..++.|+||++||++.. ...|.. .+..|+++||.|+++|+|| +|.+..........
T Consensus 14 ~~g~~l~~~~~~p~---~~~~~~~vv~~hG~~~~--~~~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~~~~~~ 85 (210)
T 1imj_A 14 VQGQALFFREALPG---SGQARFSVLLLHGIRFS--SETWQNLGTLHRLAQAGYRAVAIDLPG---LGHSKEAAAPAPIG 85 (210)
T ss_dssp ETTEEECEEEEECS---SSCCSCEEEECCCTTCC--HHHHHHHTHHHHHHHTTCEEEEECCTT---SGGGTTSCCSSCTT
T ss_pred eCCeEEEEEEeCCC---CCCCCceEEEECCCCCc--cceeecchhHHHHHHCCCeEEEecCCC---CCCCCCCCCcchhh
Confidence 37888999999886 34578999999997654 445665 4788999999999999999 55554322111111
Q ss_pred cc-chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccC
Q 005093 538 SQ-DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 616 (715)
Q Consensus 538 ~~-~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (715)
.. ..+++.++++.+ +.++++++|||+||.+++.++.++|++++++++++|.....
T Consensus 86 ~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~------------------ 141 (210)
T 1imj_A 86 ELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDK------------------ 141 (210)
T ss_dssp SCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGG------------------
T ss_pred hcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCcccc------------------
Confidence 11 114455544443 34789999999999999999999999999999998864310
Q ss_pred CCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCC
Q 005093 617 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 696 (715)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 696 (715)
.....+.++++|+|+++|++|. ++.+.+..+ +.+ ...+++++++++|.+...
T Consensus 142 ----------------------~~~~~~~~~~~p~l~i~g~~D~-~~~~~~~~~-~~~----~~~~~~~~~~~~H~~~~~ 193 (210)
T 1imj_A 142 ----------------------INAANYASVKTPALIVYGDQDP-MGQTSFEHL-KQL----PNHRVLIMKGAGHPCYLD 193 (210)
T ss_dssp ----------------------SCHHHHHTCCSCEEEEEETTCH-HHHHHHHHH-TTS----SSEEEEEETTCCTTHHHH
T ss_pred ----------------------ccchhhhhCCCCEEEEEcCccc-CCHHHHHHH-hhC----CCCCEEEecCCCcchhhc
Confidence 0112345678999999999999 887666554 333 458899999999986533
Q ss_pred CchHHHHHHHHHHHHHh
Q 005093 697 QSDFESFLNIGLWFKKY 713 (715)
Q Consensus 697 ~~~~~~~~~i~~wl~~~ 713 (715)
. ...+.+.+.+||++.
T Consensus 194 ~-~~~~~~~i~~fl~~~ 209 (210)
T 1imj_A 194 K-PEEWHTGLLDFLQGL 209 (210)
T ss_dssp C-HHHHHHHHHHHHHTC
T ss_pred C-HHHHHHHHHHHHHhc
Confidence 3 446788899998753
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=177.93 Aligned_cols=200 Identities=13% Similarity=0.146 Sum_probs=143.1
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch-------HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC----
Q 005093 464 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-------KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL---- 532 (715)
Q Consensus 464 ~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~-------~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~---- 532 (715)
.+...++.|.+ .+.|.||++||++.. ...|. .++..|+++||.|+++|+||.+..+.......
T Consensus 49 ~~~~~~~~p~~----~~~~~vvl~HG~g~~--~~~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~~~ 122 (328)
T 1qlw_A 49 QMYVRYQIPQR----AKRYPITLIHGCCLT--GMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKL 122 (328)
T ss_dssp CEEEEEEEETT----CCSSCEEEECCTTCC--GGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHT
T ss_pred eEEEEEEccCC----CCCccEEEEeCCCCC--CCccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCcccccccc
Confidence 35555677752 234679999997644 34555 47888999999999999999443322110000
Q ss_pred ------------------------CC-CCC---------ccchhh------------------HHHHHHHHHHcCCCCCc
Q 005093 533 ------------------------PG-KVG---------SQDVND------------------VLTAIDHVIDMGLANPS 560 (715)
Q Consensus 533 ------------------------~~-~~~---------~~~~~d------------------~~~~i~~l~~~~~~d~~ 560 (715)
.. .+. ...+++ +.+++..+.+.. .
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~ 198 (328)
T 1qlw_A 123 GKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL----D 198 (328)
T ss_dssp TSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH----T
T ss_pred cccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh----C
Confidence 00 000 000222 556666666552 3
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCc
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 640 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 640 (715)
+++++|||+||.+++.++.++|++++++|+++|... ..+
T Consensus 199 ~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~-----------------------------------------~~~ 237 (328)
T 1qlw_A 199 GTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC-----------------------------------------PKP 237 (328)
T ss_dssp SEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC-----------------------------------------CCG
T ss_pred CceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC-----------------------------------------CCH
Confidence 899999999999999999999999999999987430 000
Q ss_pred hhhccCCCCcEEEEeeCCCCcCCc-----hHHHHHHHHHHHcCCcEEEEEeCCCC-----ccCCCCCchHHHHHHHHHHH
Q 005093 641 ISHISKVKTPTIFLLGAQDLRVPV-----SNGLQYARALREKGVETKVIVFPNDV-----HGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 641 ~~~~~~i~~P~Lii~G~~D~~v~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~-----H~~~~~~~~~~~~~~i~~wl 710 (715)
.......++|+|+++|++|..+|. +.+..+++.++++|.++++++++++| |.+....+..++.+.+.+||
T Consensus 238 ~~~~~~~~~PvLii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~fl 317 (328)
T 1qlw_A 238 EDVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWI 317 (328)
T ss_dssp GGCGGGTTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHH
T ss_pred HHHhhccCCCEEEEeccCCccccchhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHHHH
Confidence 111223568999999999999997 88999999999989999999999665 98877776778999999999
Q ss_pred HHhc
Q 005093 711 KKYC 714 (715)
Q Consensus 711 ~~~l 714 (715)
++++
T Consensus 318 ~~~~ 321 (328)
T 1qlw_A 318 GRNT 321 (328)
T ss_dssp HHTC
T ss_pred Hhcc
Confidence 9875
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.8e-18 Score=168.38 Aligned_cols=231 Identities=17% Similarity=0.198 Sum_probs=136.8
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
...+|..++...+- ..|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... ..
T Consensus 4 ~~~~g~~l~y~~~G--------~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~ 65 (271)
T 3ia2_A 4 VAKDGTQIYFKDWG--------SGKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRG---FGRSDQP-----WT 65 (271)
T ss_dssp ECTTSCEEEEEEES--------SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTT---STTSCCC-----SS
T ss_pred EcCCCCEEEEEccC--------CCCeEEEECCCCCc--HHHHHHHHHHHHhCCceEEEecCCC---CccCCCC-----CC
Confidence 44577777644331 23568999996554 5678888899999999999999999 5554311 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhh-CCCceeEEEecCCcchhhhhccCC--CCCCce----
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTT--DIPDWC---- 610 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~~~~~~~~~~~~~--~~~~~~---- 610 (715)
....+++.+.+..+++. .+.+++.|+||||||.+++.+++. .|++++++|++++........... ......
T Consensus 66 ~~~~~~~a~d~~~~l~~--l~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (271)
T 3ia2_A 66 GNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFARF 143 (271)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--hCCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCcccccHHHHHHH
Confidence 22344444444444443 245789999999999866665554 489999999988653211000000 000000
Q ss_pred ----------eeeccCCCCCCCC-CCCCChhh-------------------HHHHHhcCchhhccCCCCcEEEEeeCCCC
Q 005093 611 ----------YVESYGSKGKDSF-TESPSVED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQDL 660 (715)
Q Consensus 611 ----------~~~~~~~~~~~~~-~~~~~~~~-------------------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~ 660 (715)
+...+........ ........ ...+...+....+.++++|+|+++|++|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~ 223 (271)
T 3ia2_A 144 KTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQ 223 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTTCCSCEEEEEETTCS
T ss_pred HHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccCCCCCEEEEEeCCCC
Confidence 0000000000000 00000000 00111122233467899999999999999
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 661 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 661 ~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
++|++.+.++...+ -...++++++++||.+..+ ...++.+.+.+||++
T Consensus 224 ~~p~~~~~~~~~~~---~~~~~~~~~~~~gH~~~~e-~p~~~~~~i~~Fl~~ 271 (271)
T 3ia2_A 224 IVPFETTGKVAAEL---IKGAELKVYKDAPHGFAVT-HAQQLNEDLLAFLKR 271 (271)
T ss_dssp SSCGGGTHHHHHHH---STTCEEEEETTCCTTHHHH-THHHHHHHHHHHHTC
T ss_pred cCChHHHHHHHHHh---CCCceEEEEcCCCCccccc-CHHHHHHHHHHHhhC
Confidence 99988755544443 2347899999999987643 345788889999863
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-18 Score=167.87 Aligned_cols=217 Identities=17% Similarity=0.218 Sum_probs=134.9
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc-chhhHHHHHHHHHHcCCCCC
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ-DVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~-~~~d~~~~i~~l~~~~~~d~ 559 (715)
.|.||++||.+.+ ...|...+..|+++||.|+++|+|| ||.+..... .+... ..+|+.++++++.+.+ .
T Consensus 16 ~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---hG~s~~~~~--~~~~~~~~~d~~~~~~~l~~~~---~ 85 (247)
T 1tqh_A 16 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKG---HGVPPEELV--HTGPDDWWQDVMNGYEFLKNKG---Y 85 (247)
T ss_dssp SCEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTT---SSSCHHHHT--TCCHHHHHHHHHHHHHHHHHHT---C
T ss_pred CcEEEEECCCCCC--hHHHHHHHHHHHHCCCEEEecccCC---CCCCHHHhc--CCCHHHHHHHHHHHHHHHHHcC---C
Confidence 4679999996544 4567788889999999999999999 554322111 11111 1355666667776653 3
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh---hhcc-CCCCCCceeeeccCCC------CCCCCCC--CC
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---LMVG-TTDIPDWCYVESYGSK------GKDSFTE--SP 627 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~------~~~~~~~--~~ 627 (715)
+++.|+||||||.+++.+|.++| ++++|++++..... .... ...... .+....... ....+.. ..
T Consensus 86 ~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (247)
T 1tqh_A 86 EKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAR-EYKKREGKSEEQIEQEMEKFKQTPMK 162 (247)
T ss_dssp CCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHH-HHHHHHTCCHHHHHHHHHHHTTSCCT
T ss_pred CeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHH-HhhcccccchHHHHhhhhcccCCCHH
Confidence 68999999999999999999988 88887654432100 0000 000000 000000000 0000000 00
Q ss_pred ChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHH
Q 005093 628 SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 707 (715)
Q Consensus 628 ~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 707 (715)
.......+. .+....+.++++|+|+++|++|..+|++.+..+++.+.. ..+++++++++||....++...++.+.+.
T Consensus 163 ~~~~~~~~~-~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~~~~~~~~~i~ 239 (247)
T 1tqh_A 163 TLKALQELI-ADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIES--PVKQIKWYEQSGHVITLDQEKDQLHEDIY 239 (247)
T ss_dssp THHHHHHHH-HHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCCC--SSEEEEEETTCCSSGGGSTTHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhhcccCCCCEEEEecCCCCCCCcchHHHHHHhcCC--CceEEEEeCCCceeeccCccHHHHHHHHH
Confidence 001111110 122345678999999999999999999988888776632 34789999999998776655668899999
Q ss_pred HHHHHh
Q 005093 708 LWFKKY 713 (715)
Q Consensus 708 ~wl~~~ 713 (715)
+||++.
T Consensus 240 ~Fl~~~ 245 (247)
T 1tqh_A 240 AFLESL 245 (247)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 999863
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=170.55 Aligned_cols=222 Identities=14% Similarity=0.116 Sum_probs=137.3
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
.....|+||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... ......+++..+.+..+++.-
T Consensus 8 ~~~~~~~vvllHG~~~~--~~~~~~~~~~l~~~g~~v~~~D~~G---~G~S~~~----~~~~~~~~~~~~~~~~~l~~l- 77 (267)
T 3sty_A 8 SPFVKKHFVLVHAAFHG--AWCWYKIVALMRSSGHNVTALDLGA---SGINPKQ----ALQIPNFSDYLSPLMEFMASL- 77 (267)
T ss_dssp --CCCCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTCSCC----GGGCCSHHHHHHHHHHHHHTS-
T ss_pred CCCCCCeEEEECCCCCC--cchHHHHHHHHHhcCCeEEEecccc---CCCCCCc----CCccCCHHHHHHHHHHHHHhc-
Confidence 34567899999997654 5678889999999999999999999 5554321 111134556665555555542
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc-----cCC--CCCCceee-eccCCC--C-------
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-----GTT--DIPDWCYV-ESYGSK--G------- 619 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~-----~~~--~~~~~~~~-~~~~~~--~------- 619 (715)
-+.+++.|+|||+||.+++.++.++|++++++|++++........ ... ....|... ..+... .
T Consensus 78 ~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (267)
T 3sty_A 78 PANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIA 157 (267)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCEEEC
T ss_pred CCCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccchhhh
Confidence 146899999999999999999999999999999988864321100 000 00011000 000000 0
Q ss_pred -----CCCCCCCCChhhHHHH---------------HhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCC
Q 005093 620 -----KDSFTESPSVEDLTRF---------------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 679 (715)
Q Consensus 620 -----~~~~~~~~~~~~~~~~---------------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~ 679 (715)
...+............ ............++|+|+++|++|..+|++....+.+.+ .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~ 233 (267)
T 3sty_A 158 GPKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKN----P 233 (267)
T ss_dssp CHHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHHHHHHHHHHHHS----C
T ss_pred hHHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccCHHHHHHHHHhC----C
Confidence 0000001111111111 001111111222589999999999999888777666655 3
Q ss_pred cEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 680 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 680 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
.+++++++++||..... ...++.+.|.+|++++
T Consensus 234 ~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~~~ 266 (267)
T 3sty_A 234 PDEVKEIEGSDHVTMMS-KPQQLFTTLLSIANKY 266 (267)
T ss_dssp CSEEEECTTCCSCHHHH-SHHHHHHHHHHHHHHC
T ss_pred CceEEEeCCCCcccccc-ChHHHHHHHHHHHHhc
Confidence 37899999999986543 4457888999999874
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=176.70 Aligned_cols=244 Identities=16% Similarity=0.088 Sum_probs=148.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-cc-----chHHHHHHH-hCCcEEEEEcCCCCCCCchhhhhcCCC
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SS-----YSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPG 534 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~-~~-----~~~~~~~la-~~G~~vi~~d~rG~~~~g~~~~~~~~~ 534 (715)
...+.|+++.|.+. .++.|+|++.||....... .. ....+..|+ ++||+|+++||||.++.+.... ..
T Consensus 57 ~~~~~g~l~~P~~~--~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~~D~rG~G~s~~~~~---~~ 131 (377)
T 4ezi_A 57 LTIASGLVAMPIHP--VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYLGLGDNELTLH---PY 131 (377)
T ss_dssp EEEEEEEEEEESSC--SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEEECCTTSTTCCCSSC---CT
T ss_pred EEEEEEEEEECCCC--CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEEeCCCCCCCCCCCCc---cc
Confidence 35688999999853 4678999999996542211 11 113456678 9999999999999655432110 00
Q ss_pred CCCc---cchhhHHHHHHHHHHc-CCCCCceEEEEEeChhHHHHHHHHhhCCC-----ceeEEEecCCcchhhhhccCCC
Q 005093 535 KVGS---QDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTD 605 (715)
Q Consensus 535 ~~~~---~~~~d~~~~i~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~~~~~~~~~~~ 605 (715)
.... ..+.|..+++..+.+. +..+.++|+++|||+||++++.++..+|+ .+++++..+++.++........
T Consensus 132 ~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~~~~~p~dl~~~~~~~~ 211 (377)
T 4ezi_A 132 VQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVAPGSAPYGWEETMHFVM 211 (377)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEEEESCCCCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEEecCcccCHHHHHHHHh
Confidence 0011 1233333333333333 32356899999999999999999876543 5889999998887643211000
Q ss_pred ---CCC---c----------------eeeeccCCCC-------CC----------CCCCCC----ChhhHHHHH-hcCc-
Q 005093 606 ---IPD---W----------------CYVESYGSKG-------KD----------SFTESP----SVEDLTRFH-SKSP- 640 (715)
Q Consensus 606 ---~~~---~----------------~~~~~~~~~~-------~~----------~~~~~~----~~~~~~~~~-~~sp- 640 (715)
.+. + .....+.... .. .+.... .....+.+. ..+|
T Consensus 212 ~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 291 (377)
T 4ezi_A 212 LEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQDPLLIFQPKFSNGIISKTDRN 291 (377)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSSGGGGBCHHHHHHHHTTCSTT
T ss_pred cCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccCCCHHHHhchhhhhhcccccchH
Confidence 000 0 0000000000 00 000000 000000011 0122
Q ss_pred hh--------hccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC--CCccCCCCCchHHHHHHHHHHH
Q 005093 641 IS--------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN--DVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 641 ~~--------~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H~~~~~~~~~~~~~~i~~wl 710 (715)
+. .-.++++|+|++||+.|.+||+.++.++++++++.|. ++++.+++ .+|... .......+++||
T Consensus 292 ~~~~l~~~~~~~~~~~~Pvli~hG~~D~~Vp~~~~~~l~~~l~~~G~-v~~~~~~~~~~~H~~~----~~~~~~~~~~wl 366 (377)
T 4ezi_A 292 TEILKINFNHYDFKPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKYSD-FVWIKSVSDALDHVQA----HPFVLKEQVDFF 366 (377)
T ss_dssp HHHHHHHHCCCCSCCSSCEEEEECTTCSSSCHHHHHHHHHHHHTTCS-CEEEEESCSSCCTTTT----HHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhcCC-EEEEEcCCCCCCccCh----HHHHHHHHHHHH
Confidence 10 0125678999999999999999999999999999999 99999999 889653 346778899999
Q ss_pred HHhcC
Q 005093 711 KKYCK 715 (715)
Q Consensus 711 ~~~l~ 715 (715)
+++++
T Consensus 367 ~~~~~ 371 (377)
T 4ezi_A 367 KQFER 371 (377)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 98763
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=168.03 Aligned_cols=231 Identities=16% Similarity=0.189 Sum_probs=138.1
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
..+|..++...+-|+ ..|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... ...
T Consensus 6 ~~~g~~l~y~~~g~~------~~~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~D~~G---~G~S~~~-----~~~ 69 (276)
T 1zoi_A 6 TKDGVQIFYKDWGPR------DAPVIHFHHGWPLS--ADDWDAQLLFFLAHGYRVVAHDRRG---HGRSSQV-----WDG 69 (276)
T ss_dssp CTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSC
T ss_pred CCCCcEEEEEecCCC------CCCeEEEECCCCcc--hhHHHHHHHHHHhCCCEEEEecCCC---CCCCCCC-----CCC
Confidence 346777765554332 34789999996554 5678888999999999999999999 5555321 111
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-CCceeEEEecCCcchhhhhccCC--CCCCce-----
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTT--DIPDWC----- 610 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~~~~~~~~~~--~~~~~~----- 610 (715)
..++++.+.+..+++. ++.+++.|+||||||.+++.+++++ |++++++|++++........... ......
T Consensus 70 ~~~~~~~~d~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (276)
T 1zoi_A 70 HDMDHYADDVAAVVAH--LGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVFDGFQ 147 (276)
T ss_dssp CSHHHHHHHHHHHHHH--HTCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCCSSCTTSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCccccccccccccccHHHHHHHH
Confidence 2344444444444443 2346899999999999999877777 99999999988643211000000 000000
Q ss_pred ---------eeeccC--CC-CCCCCCCCCChhhHHH-------------------HHhcCchhhccCCCCcEEEEeeCCC
Q 005093 611 ---------YVESYG--SK-GKDSFTESPSVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQD 659 (715)
Q Consensus 611 ---------~~~~~~--~~-~~~~~~~~~~~~~~~~-------------------~~~~sp~~~~~~i~~P~Lii~G~~D 659 (715)
....+. .. ................ +...+....+.++++|+|+++|++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D 227 (276)
T 1zoi_A 148 AQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPVLVMHGDDD 227 (276)
T ss_dssp HHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHHHCCSCEEEEEETTC
T ss_pred HHHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhhccccCCCEEEEEcCCC
Confidence 000000 00 0000000000111111 1112223346678999999999999
Q ss_pred CcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 660 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
..+|++...+.+..+ -...++++++++||....+ ...++.+.|.+|++
T Consensus 228 ~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 228 QIVPYENSGVLSAKL---LPNGALKTYKGYPHGMPTT-HADVINADLLAFIR 275 (276)
T ss_dssp SSSCSTTTHHHHHHH---STTEEEEEETTCCTTHHHH-THHHHHHHHHHHHT
T ss_pred cccChHHHHHHHHhh---CCCceEEEcCCCCCchhhh-CHHHHHHHHHHHhc
Confidence 999987443333322 2358899999999987543 45578888999985
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-17 Score=166.11 Aligned_cols=231 Identities=15% Similarity=0.191 Sum_probs=138.2
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
..+|..++...+-|+ +.|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... ...
T Consensus 5 ~~~g~~l~y~~~g~~------~~~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~~ 68 (275)
T 1a88_A 5 TSDGTNIFYKDWGPR------DGLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRG---HGRSDQP-----STG 68 (275)
T ss_dssp CTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSC
T ss_pred ccCCCEEEEEEcCCC------CCceEEEECCCCCc--hhhHHHHHHHHHHCCceEEEEcCCc---CCCCCCC-----CCC
Confidence 346777765544332 34789999996544 5578888899999999999999999 5554311 111
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-CCceeEEEecCCcchhhhhccCC--CCCCce-----
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTT--DIPDWC----- 610 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~~~~~~~~~~--~~~~~~----- 610 (715)
..++++.+.+..+++. ++.+++.|+||||||.+++.+++++ |++++++|++++........... ......
T Consensus 69 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (275)
T 1a88_A 69 HDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFDEFR 146 (275)
T ss_dssp CSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--cCCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccCccCcccCCHHHHHHHH
Confidence 2344444444444443 2346899999999999998877776 99999999988643211000000 000000
Q ss_pred ---------eeeccC--C-CCCCCCCCCCChhhHHH-------------------HHhcCchhhccCCCCcEEEEeeCCC
Q 005093 611 ---------YVESYG--S-KGKDSFTESPSVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQD 659 (715)
Q Consensus 611 ---------~~~~~~--~-~~~~~~~~~~~~~~~~~-------------------~~~~sp~~~~~~i~~P~Lii~G~~D 659 (715)
....+. . ...............+. +...+....+.++++|+|+++|++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D 226 (275)
T 1a88_A 147 AALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPVLVAHGTDD 226 (275)
T ss_dssp HHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEEEEETTC
T ss_pred HHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccccccCCCCEEEEecCCC
Confidence 000000 0 00000000001111110 1112223346678999999999999
Q ss_pred CcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 660 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
..+|+....+.+..+ ...+++++++++||..... ...++.+.|.+|++
T Consensus 227 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 274 (275)
T 1a88_A 227 QVVPYADAAPKSAEL---LANATLKSYEGLPHGMLST-HPEVLNPDLLAFVK 274 (275)
T ss_dssp SSSCSTTTHHHHHHH---STTEEEEEETTCCTTHHHH-CHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHhh---CCCcEEEEcCCCCccHHHh-CHHHHHHHHHHHhh
Confidence 999987544433322 2358899999999987643 45578888999986
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-18 Score=179.90 Aligned_cols=188 Identities=15% Similarity=0.139 Sum_probs=120.7
Q ss_pred ccceeecC-CCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEee
Q 005093 99 FEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV 177 (715)
Q Consensus 99 ~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l 177 (715)
+..+.||| ||++|+|.+..... . ....||++|+++++.+.+
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~---------------------------------~-----~~~~l~~~d~~~~~~~~l 231 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHD---------------------------------L-----VDARMWLINEDGTNMRKV 231 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTT---------------------------------T-----SSCSEEEEETTSCCCEES
T ss_pred ccccEECCCCCCEEEEEEecCCC---------------------------------C-----CcceEEEEeCCCCceEEe
Confidence 46789999 99999998753210 0 236799999999998888
Q ss_pred cCCCCC--CccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCcee
Q 005093 178 KGIPKS--LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN 255 (715)
Q Consensus 178 ~~~~~~--~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (715)
+ ... .....+.|||||+. |+|.+...+. ....||++|+ ++++.+.
T Consensus 232 ~--~~~~~~~~~~~~~spdg~~----l~~~~~~~~~----------~~~~l~~~d~-----------------~~g~~~~ 278 (388)
T 3pe7_A 232 K--THAEGESCTHEFWVPDGSA----LVYVSYLKGS----------PDRFIYSADP-----------------ETLENRQ 278 (388)
T ss_dssp C--CCCTTEEEEEEEECTTSSC----EEEEEEETTC----------CCEEEEEECT-----------------TTCCEEE
T ss_pred e--eCCCCcccccceECCCCCE----EEEEecCCCC----------CcceEEEEec-----------------CCCceEE
Confidence 4 332 24567899999999 9998754321 1125999997 7787777
Q ss_pred cCCCCc------cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccc
Q 005093 256 LTESIS------SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 329 (715)
Q Consensus 256 lt~~~~------~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g 329 (715)
++.... ....+.|||||++|+|...+.... ......+||++|+.+++.+.++........ +.+
T Consensus 279 l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~--~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~---------~~~ 347 (388)
T 3pe7_A 279 LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY--KIENDPFLYVFNMKNGTQHRVARHDTSWKV---------FEG 347 (388)
T ss_dssp EEEECCEEEEEECTTSSEEEEEECCC--------------CCCCEEEEEETTTTEEEEEEECCCCCCC---------BTT
T ss_pred EEcCCCceeeeecCCCCeEccCCCcceeEeeecccc--ccCCCCEEEEEeccCCceEEeccccCcccc---------ccc
Confidence 755333 133458999999999876542100 002245799999988776555432210000 000
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 005093 330 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 368 (715)
Q Consensus 330 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~ 368 (715)
........++|+|||+.|++.+...+...||.+++..+.
T Consensus 348 ~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 348 DRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPESV 386 (388)
T ss_dssp BSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCGGG
T ss_pred ccccCCCCccCCCCCCEEEEEecCCCceeEEEEECChhc
Confidence 000024567899999999999988888999999987553
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=164.18 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=120.0
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhC--CcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~--G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
.|+|||+||...+........+.++++++ +|.|++||++| +|.+ ..+.++.++.. .+
T Consensus 2 mptIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~~pdl~~---~g~~----------------~~~~l~~~~~~--~~ 60 (202)
T 4fle_A 2 MSTLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIPQLPP---YPAE----------------AAEMLESIVMD--KA 60 (202)
T ss_dssp -CEEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEECCCCCS---SHHH----------------HHHHHHHHHHH--HT
T ss_pred CcEEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEEEeCCCC---CHHH----------------HHHHHHHHHHh--cC
Confidence 38999999944333222223345566665 59999999998 5433 23334444433 24
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhc
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 638 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (715)
.++|+|+|+||||.+|+.+|.++|....+++...+........... ...... ...+. ....... ...
T Consensus 61 ~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~--~~~~~~~--~~~ 127 (202)
T 4fle_A 61 GQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGE-------NQNPYT--GQKYV--LESRHIY--DLK 127 (202)
T ss_dssp TSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEE-------EECTTT--CCEEE--ECHHHHH--HHH
T ss_pred CCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhh-------hccccc--ccccc--chHHHHH--HHH
Confidence 6899999999999999999999998887777666654432211100 000000 00000 0011111 122
Q ss_pred CchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 639 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 639 sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
.....+.++++|+|++||++|.+||++++.++++ .+++++++|++|.+... .++++.|.+||+.
T Consensus 128 ~~~~~~~~~~~P~LiihG~~D~~Vp~~~s~~l~~-------~~~l~i~~g~~H~~~~~---~~~~~~I~~FL~~ 191 (202)
T 4fle_A 128 AMQIEKLESPDLLWLLQQTGDEVLDYRQAVAYYT-------PCRQTVESGGNHAFVGF---DHYFSPIVTFLGL 191 (202)
T ss_dssp TTCCSSCSCGGGEEEEEETTCSSSCHHHHHHHTT-------TSEEEEESSCCTTCTTG---GGGHHHHHHHHTC
T ss_pred hhhhhhhccCceEEEEEeCCCCCCCHHHHHHHhh-------CCEEEEECCCCcCCCCH---HHHHHHHHHHHhh
Confidence 3334566788999999999999999998877653 36899999999987543 3567889999863
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-17 Score=164.93 Aligned_cols=229 Identities=17% Similarity=0.249 Sum_probs=137.3
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
..+|.+++...+ + ..|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... ...
T Consensus 5 ~~~g~~l~y~~~------g--~~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~~-----~~~ 66 (273)
T 1a8s_A 5 TRDGTQIYYKDW------G--SGQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRG---HGRSSQP-----WSG 66 (273)
T ss_dssp CTTSCEEEEEEE------S--CSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSC
T ss_pred cCCCcEEEEEEc------C--CCCEEEEECCCCCc--HHHHhhHHhhHhhCCcEEEEECCCC---CCCCCCC-----CCC
Confidence 346667753332 1 34679999996654 5678888899999999999999999 5554311 112
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-CCceeEEEecCCcchhhhhccCC--CCCCcee----
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTT--DIPDWCY---- 611 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~---- 611 (715)
..+++..+.+..+++. ++.+++.|+||||||.+++.+++++ |++++++|++++........... .......
T Consensus 67 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (273)
T 1a8s_A 67 NDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFDGIR 144 (273)
T ss_dssp CSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccCccccccCcHHHHHHHH
Confidence 2355555555555544 2457899999999999998877665 89999999988643110000000 0000000
Q ss_pred ----------eeccC--CC-CCCCCCCCCChhhHHH-------------------HHhcCchhhccCCCCcEEEEeeCCC
Q 005093 612 ----------VESYG--SK-GKDSFTESPSVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQD 659 (715)
Q Consensus 612 ----------~~~~~--~~-~~~~~~~~~~~~~~~~-------------------~~~~sp~~~~~~i~~P~Lii~G~~D 659 (715)
...+. .. ................ +...+....+.++++|+|+++|++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D 224 (273)
T 1a8s_A 145 QASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHGDAD 224 (273)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCEEEEEETTC
T ss_pred HHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhhhhcCCCCEEEEECCCC
Confidence 00000 00 0000000000010000 1112233456789999999999999
Q ss_pred CcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 660 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
..+|++...+.+..+ -..+++++++++||..... ...++.+.|.+||+
T Consensus 225 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 225 QVVPIEASGIASAAL---VKGSTLKIYSGAPHGLTDT-HKDQLNADLLAFIK 272 (273)
T ss_dssp SSSCSTTTHHHHHHH---STTCEEEEETTCCSCHHHH-THHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHh---CCCcEEEEeCCCCCcchhh-CHHHHHHHHHHHHh
Confidence 999987544433332 2347899999999987543 45578888999986
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=166.01 Aligned_cols=222 Identities=13% Similarity=0.152 Sum_probs=142.2
Q ss_pred ccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 457 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
+...+|.++.....- +.|.||++||++.. ...|...+..|+ +||.|+++|+|| +|.+...
T Consensus 7 ~~~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G---~G~S~~~------ 66 (262)
T 3r0v_A 7 VPSSDGTPIAFERSG--------SGPPVVLVGGALST--RAGGAPLAERLA-PHFTVICYDRRG---RGDSGDT------ 66 (262)
T ss_dssp EECTTSCEEEEEEEE--------CSSEEEEECCTTCC--GGGGHHHHHHHT-TTSEEEEECCTT---STTCCCC------
T ss_pred EEcCCCcEEEEEEcC--------CCCcEEEECCCCcC--hHHHHHHHHHHh-cCcEEEEEecCC---CcCCCCC------
Confidence 344577788754432 24789999997655 456778888887 899999999999 5544321
Q ss_pred CccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCce--eeec
Q 005093 537 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC--YVES 614 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~ 614 (715)
.....++..+.+..+++.. + +++.++|||+||.+++.++.++| +++++|+++|............ ..+. ....
T Consensus 67 ~~~~~~~~~~~~~~~~~~l--~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~-~~~~~~~~~~ 141 (262)
T 3r0v_A 67 PPYAVEREIEDLAAIIDAA--G-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVP-PDYQTRLDAL 141 (262)
T ss_dssp SSCCHHHHHHHHHHHHHHT--T-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCC-TTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc--C-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhh-hHHHHHHHHH
Confidence 1234666666666666653 4 78999999999999999999999 9999999998654321110000 0000 0000
Q ss_pred cCC--------CCCCCCCCCCChhhHHHHH------------------------hcCchhhccCCCCcEEEEeeCCCCcC
Q 005093 615 YGS--------KGKDSFTESPSVEDLTRFH------------------------SKSPISHISKVKTPTIFLLGAQDLRV 662 (715)
Q Consensus 615 ~~~--------~~~~~~~~~~~~~~~~~~~------------------------~~sp~~~~~~i~~P~Lii~G~~D~~v 662 (715)
+.. .........+ ....+.+. ...+...+.++++|+|+++|++|..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~ 220 (262)
T 3r0v_A 142 LAEGRRGDAVTYFMTEGVGVP-PDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIPTLVMDGGASPAW 220 (262)
T ss_dssp HHTTCHHHHHHHHHHHTSCCC-HHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSCEEEEECTTCCHH
T ss_pred hhccchhhHHHHHhhcccCCC-HHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCCEEEEeecCCCCC
Confidence 000 0000000000 01111111 11234567788999999999999999
Q ss_pred CchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 663 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 663 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
|++.+..+.+.+. .+++++++++|| + +...++.+.+.+||++
T Consensus 221 ~~~~~~~~~~~~~----~~~~~~~~~~gH-~---~~p~~~~~~i~~fl~~ 262 (262)
T 3r0v_A 221 IRHTAQELADTIP----NARYVTLENQTH-T---VAPDAIAPVLVEFFTR 262 (262)
T ss_dssp HHHHHHHHHHHST----TEEEEECCCSSS-S---CCHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHhCC----CCeEEEecCCCc-c---cCHHHHHHHHHHHHhC
Confidence 8887777766653 478999999999 3 3456788889999863
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=166.72 Aligned_cols=219 Identities=15% Similarity=0.208 Sum_probs=139.9
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
...|.||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+... ......++++.+.+..+++.- .
T Consensus 13 ~~~~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~----~~~~~~~~~~a~dl~~~l~~l--~ 80 (268)
T 3v48_A 13 ADAPVVVLISGLGGS--GSYWLPQLAVLEQ-EYQVVCYDQRG---TGNNPDT----LAEDYSIAQMAAELHQALVAA--G 80 (268)
T ss_dssp TTCCEEEEECCTTCC--GGGGHHHHHHHHT-TSEEEECCCTT---BTTBCCC----CCTTCCHHHHHHHHHHHHHHT--T
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHHHhh-cCeEEEECCCC---CCCCCCC----ccccCCHHHHHHHHHHHHHHc--C
Confidence 356899999996654 5678888888854 69999999999 6655311 111234667776666666653 3
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc-----------CCCCCCce-------eeeccCCCCC
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----------TTDIPDWC-------YVESYGSKGK 620 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~ 620 (715)
.+++.|+||||||.+++.+|.++|++++++|++++......... ......+. +...+.....
T Consensus 81 ~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (268)
T 3v48_A 81 IEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARA 160 (268)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTTH
T ss_pred CCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhccc
Confidence 47899999999999999999999999999999887532110000 00000000 0000000000
Q ss_pred --------CCCCCCCChh----hHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC
Q 005093 621 --------DSFTESPSVE----DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 688 (715)
Q Consensus 621 --------~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (715)
.......... ....+...+....+.++++|+|+++|++|..+|++.+..+.+.+. ..+++++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~l~~~~p----~~~~~~~~~ 236 (268)
T 3v48_A 161 PRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALP----DSQKMVMPY 236 (268)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSCTHHHHHHHHHCS----SEEEEEESS
T ss_pred ccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccCHHHHHHHHHhCC----cCeEEEeCC
Confidence 0000000000 011112223334577899999999999999999988877776663 478999999
Q ss_pred CCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 689 DVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 689 ~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+||....+ ....+.+.|.+|+.+.+
T Consensus 237 ~GH~~~~e-~p~~~~~~i~~fl~~~~ 261 (268)
T 3v48_A 237 GGHACNVT-DPETFNALLLNGLASLL 261 (268)
T ss_dssp CCTTHHHH-CHHHHHHHHHHHHHHHH
T ss_pred CCcchhhc-CHHHHHHHHHHHHHHhc
Confidence 99976543 44578889999998653
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=171.14 Aligned_cols=219 Identities=16% Similarity=0.127 Sum_probs=137.2
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... .......++..+.+..+++.-.. .+
T Consensus 4 g~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~----~~~~~~~~~~~~~l~~~l~~l~~-~~ 73 (258)
T 3dqz_A 4 KHHFVLVHNAYHG--AWIWYKLKPLLESAGHRVTAVELAA---SGIDPRP----IQAVETVDEYSKPLIETLKSLPE-NE 73 (258)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTCSSC----GGGCCSHHHHHHHHHHHHHTSCT-TC
T ss_pred CCcEEEECCCCCc--cccHHHHHHHHHhCCCEEEEecCCC---CcCCCCC----CCccccHHHhHHHHHHHHHHhcc-cC
Confidence 3899999997654 5568888999999999999999999 5544311 01113455666555555554322 37
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc-------CCCCCCce---ee--e---------ccCCCC
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPDWC---YV--E---------SYGSKG 619 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-------~~~~~~~~---~~--~---------~~~~~~ 619 (715)
++.|+|||+||.+++.++.++|++++++|+++|......... ......|. .. . .+....
T Consensus 74 ~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3dqz_A 74 EVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKF 153 (258)
T ss_dssp CEEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEECCHHH
T ss_pred ceEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhhhHHH
Confidence 899999999999999999999999999999988543211000 00000010 00 0 000000
Q ss_pred -CCCCCCCCChhhHHHHH--------------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEE
Q 005093 620 -KDSFTESPSVEDLTRFH--------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 684 (715)
Q Consensus 620 -~~~~~~~~~~~~~~~~~--------------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (715)
...+............. ...........++|+|+++|++|..+|++.+..+.+.+. ..+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~ 229 (258)
T 3dqz_A 154 MKARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFN----VSKVY 229 (258)
T ss_dssp HHHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHSC----CSCEE
T ss_pred HHHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCCEEEEECCCCeeeCHHHHHHHHHhCC----cccEE
Confidence 00000111111111111 011112222235899999999999999988877776653 35788
Q ss_pred EeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 685 VFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 685 ~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+++++||.... +...++.+.|.+|+++|+
T Consensus 230 ~~~~~gH~~~~-~~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 230 EIDGGDHMVML-SKPQKLFDSLSAIATDYM 258 (258)
T ss_dssp EETTCCSCHHH-HSHHHHHHHHHHHHHHTC
T ss_pred EcCCCCCchhh-cChHHHHHHHHHHHHHhC
Confidence 99999998664 345578899999999875
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=166.15 Aligned_cols=227 Identities=15% Similarity=0.167 Sum_probs=138.2
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
..+|.+++...+ + +.|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... ...
T Consensus 5 ~~~g~~l~y~~~------g--~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~~ 66 (274)
T 1a8q_A 5 TRDGVEIFYKDW------G--QGRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRG---HGHSTPV-----WDG 66 (274)
T ss_dssp CTTSCEEEEEEE------C--SSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSC
T ss_pred ccCCCEEEEEec------C--CCceEEEECCCcch--HHHHHHHHHHHHhCCCeEEEEcCCC---CCCCCCC-----CCC
Confidence 346666654332 1 34679999996554 5578888899999999999999999 5554311 112
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-CCceeEEEecCCcchhhhhccCCCCCCc--eee---
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTTDIPDW--CYV--- 612 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~--- 612 (715)
..+++..+.+..+++. ++.+++.|+||||||.+++.+++++ |++++++|++++......... ...... ...
T Consensus 67 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~-~~~~~~~~~~~~~~ 143 (274)
T 1a8q_A 67 YDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSD-KNPDGVPDEVFDAL 143 (274)
T ss_dssp CSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCS-SCTTSBCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH--cCCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccc-cCcccchHHHHHHH
Confidence 2355555555555544 2457899999999999999877765 899999999886431100000 000000 000
Q ss_pred ----------------eccCCCCCCCCCCCCChhhHH-------------------HHHhcCchhhccCCCCcEEEEeeC
Q 005093 613 ----------------ESYGSKGKDSFTESPSVEDLT-------------------RFHSKSPISHISKVKTPTIFLLGA 657 (715)
Q Consensus 613 ----------------~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~sp~~~~~~i~~P~Lii~G~ 657 (715)
..+... ............. .+...+....+.++++|+|+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 221 (274)
T 1a8q_A 144 KNGVLTERSQFWKDTAEGFFSA--NRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLVVHGD 221 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT--TSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEET
T ss_pred HHHhhccHHHHHHHhccccccc--ccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhhcCCCCEEEEecC
Confidence 000000 0000000000000 111123334567899999999999
Q ss_pred CCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCC-CchHHHHHHHHHHHH
Q 005093 658 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP-QSDFESFLNIGLWFK 711 (715)
Q Consensus 658 ~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~wl~ 711 (715)
+|..+|++...+..... ...+++++++++||..... +...++.+.|.+||+
T Consensus 222 ~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~~~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 222 DDQVVPIDATGRKSAQI---IPNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp TCSSSCGGGTHHHHHHH---STTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred cCCCCCcHHHHHHHHhh---CCCceEEEECCCCCceecccCCHHHHHHHHHHHhc
Confidence 99999987544433322 2357899999999987654 255678888999985
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=172.83 Aligned_cols=247 Identities=12% Similarity=0.149 Sum_probs=151.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-----------cchHHHH---HHHhCCcEEEEEcCCC--CCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------SYSKSLA---FLSSVGYSLLIVNYRG--SLGF 524 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-----------~~~~~~~---~la~~G~~vi~~d~rG--~~~~ 524 (715)
+|..++...+-+. .....|+||++||.+...... .|...+. .|+++||.|+++|+|| .+..
T Consensus 29 ~g~~l~y~~~g~~---~~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~~G~s 105 (366)
T 2pl5_A 29 SPVVIAYETYGTL---SSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSS 105 (366)
T ss_dssp SSEEEEEEEEECC---CTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSS
T ss_pred cCceeeEEeccCc---CCCCCceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcccCCC
Confidence 4556665555443 223468999999976554310 3444442 4557899999999999 3333
Q ss_pred chhhhhcC-CC----CCCccchhhHHHHHHHHHHcCCCCCceE-EEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh
Q 005093 525 GEEALQSL-PG----KVGSQDVNDVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598 (715)
Q Consensus 525 g~~~~~~~-~~----~~~~~~~~d~~~~i~~l~~~~~~d~~~i-~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~ 598 (715)
+....... .. ......++++.+.+..+++. ++.+++ .|+||||||.+++.+|.++|++++++|+++|.....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 183 (366)
T 2pl5_A 106 GPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHS 183 (366)
T ss_dssp STTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCC
T ss_pred CCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccCccCC
Confidence 21110000 00 00123567777777777665 345788 899999999999999999999999999999865421
Q ss_pred hhc---------cCCCCCCc-----------------------------eeeeccCCC-----------CCC--------
Q 005093 599 LMV---------GTTDIPDW-----------------------------CYVESYGSK-----------GKD-------- 621 (715)
Q Consensus 599 ~~~---------~~~~~~~~-----------------------------~~~~~~~~~-----------~~~-------- 621 (715)
... .....+.| .+...+... ...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
T 2pl5_A 184 AMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGE 263 (366)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTC
T ss_pred CccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHHHHHHH
Confidence 100 00000000 000000000 000
Q ss_pred CCCCCCChhhH----HHHHhcC------chhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEe-CCCC
Q 005093 622 SFTESPSVEDL----TRFHSKS------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF-PNDV 690 (715)
Q Consensus 622 ~~~~~~~~~~~----~~~~~~s------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~-~~~~ 690 (715)
.+......... ..+...+ ....+.++++|+|+++|++|.++|++.+..+.+.+...+..++++++ +++|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 343 (366)
T 2pl5_A 264 SFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSGEG 343 (366)
T ss_dssp CSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECCCBS
T ss_pred hhhcccChhHHHHHHhhhhhhccccccchhhhhccCCCCEEEEecCCCcccCHHHHHHHHHHhhhcccCeEEEEeCCCCC
Confidence 00000011111 1111111 12267789999999999999999999999999999876667899999 8999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHh
Q 005093 691 HGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 691 H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
|...... ..++.+.|.+||+++
T Consensus 344 H~~~~e~-p~~~~~~i~~fl~~~ 365 (366)
T 2pl5_A 344 HDSFLLK-NPKQIEILKGFLENP 365 (366)
T ss_dssp SGGGGSC-CHHHHHHHHHHHHCC
T ss_pred cchhhcC-hhHHHHHHHHHHccC
Confidence 9876544 358889999999764
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=189.66 Aligned_cols=243 Identities=13% Similarity=0.093 Sum_probs=157.9
Q ss_pred ccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-----------------c---c-hHHHHHHHhCCcEE
Q 005093 455 ANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------------S---Y-SKSLAFLSSVGYSL 513 (715)
Q Consensus 455 ~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-----------------~---~-~~~~~~la~~G~~v 513 (715)
+.++..||.+|.+.+|+|++ .++.|+||+.||.+...... . | ....+.|+++||+|
T Consensus 44 v~i~~~DG~~L~a~l~~P~~---~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~Gy~v 120 (560)
T 3iii_A 44 GTVEMRDGEKLYINIFRPNK---DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFWVPNDYVV 120 (560)
T ss_dssp EEEECTTSCEEEEEEEECSS---SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHHGGGTCEE
T ss_pred EEEECCCCcEEEEEEEecCC---CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCCHHHHHhCCCEE
Confidence 35566789999999999983 57899999999844432110 0 0 01367899999999
Q ss_pred EEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCC
Q 005093 514 LIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 593 (715)
Q Consensus 514 i~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 593 (715)
+++|+||.++++..+. .++....+|+.++|+|+.+++..+ .+|+++|+|+||++++.+|+.+|+.++|+|+.+|
T Consensus 121 v~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~aiv~~~~ 194 (560)
T 3iii_A 121 VKVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEG 194 (560)
T ss_dssp EEEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEEEEEESC
T ss_pred EEEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEEEEecCC
Confidence 9999999777665442 233456899999999999987776 8999999999999999999999999999999999
Q ss_pred cchhhhhc---cCCCCCCce-e-e----eccCC-CCCC----CCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCC
Q 005093 594 LCNLALMV---GTTDIPDWC-Y-V----ESYGS-KGKD----SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 659 (715)
Q Consensus 594 ~~~~~~~~---~~~~~~~~~-~-~----~~~~~-~~~~----~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D 659 (715)
+.++..-. +......+. + . ..+.. .... .+...+..+ +.|...++ .+.+|++|+|+++|..|
T Consensus 195 ~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d--~~W~~~~~--~~~~I~vPvl~v~Gw~D 270 (560)
T 3iii_A 195 LNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFD--DFWKQRQV--PLSQIKTPLLTCASWST 270 (560)
T ss_dssp CCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSC--HHHHTTBC--CGGGCCSCEEEEEEGGG
T ss_pred cccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcc--hHhhccCC--chhhCCCCEEEeCCcCC
Confidence 98865311 100000000 0 0 00000 0000 000011111 12333333 57899999999999999
Q ss_pred CcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 660 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
..+....+.+.+++++.. ...+++.. .+|.... -..+..+..++||++|||
T Consensus 271 ~~~~~~g~l~~y~~l~~~--~k~l~ih~-~~~~~~~--~~~~~~~~~~~wfD~~Lk 321 (560)
T 3iii_A 271 QGLHNRGSFEGFKQAASE--EKWLYVHG-RKEWESY--YARENLERQKSFFDFYLK 321 (560)
T ss_dssp TTTTHHHHHHHHHHCCCS--SEEEEEES-SCHHHHH--HSHHHHHHHHHHHHHHTS
T ss_pred CcccchhHHHHHHhcccc--CcEEEECC-CCCcCcc--cChhHHHHHHHHHHHHhC
Confidence 755556666667666432 22333322 2232100 012456789999999996
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=172.76 Aligned_cols=240 Identities=14% Similarity=0.106 Sum_probs=149.4
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCC--CCC
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP--GKV 536 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~--~~~ 536 (715)
+.++..+ +.|. + +++|+||++||++.......|.. ..+.+++.|+.|+++|++++..|.. +..... +..
T Consensus 20 ~~~i~v~-~~p~-~---~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~~~~~-~~~~~~~~g~~ 93 (304)
T 1sfr_A 20 GRDIKVQ-FQSG-G---ANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSD-WYQPACGKAGC 93 (304)
T ss_dssp TEEEEEE-EECC-S---TTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTCB-CSSCEEETTEE
T ss_pred CCceEEE-ECCC-C---CCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCccccc-cCCcccccccc
Confidence 4567655 4443 2 67999999999743222334443 2466778899999999987533321 100000 000
Q ss_pred CccchhhH--HHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeec
Q 005093 537 GSQDVNDV--LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 614 (715)
Q Consensus 537 ~~~~~~d~--~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (715)
.....++. .+++.++.++..+++++++|+|+||||++++.++.++|++|+++++++|..+........... .....
T Consensus 94 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~--~~~~~ 171 (304)
T 1sfr_A 94 QTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIG--LAMGD 171 (304)
T ss_dssp ECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTTHHHHHH--HHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCccccchhhhhh--Hhhhh
Confidence 01223332 244455555334677899999999999999999999999999999999987543210000000 00000
Q ss_pred cCCCCCCCCCCCCChhhHHHHHhcCchhhccCC---CCcEEEEeeCCCC--------------cCCchHHHHHHHHHHHc
Q 005093 615 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDL--------------RVPVSNGLQYARALREK 677 (715)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~--------------~v~~~~~~~~~~~l~~~ 677 (715)
.+......+.+.+ ....+...+|...+.++ .+|+++.+|+.|. .++...+++++++|+++
T Consensus 172 ~~~~~~~~~~g~~---~~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~ 248 (304)
T 1sfr_A 172 AGGYKASDMWGPK---EDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAG 248 (304)
T ss_dssp TTSCCHHHHHCST---TSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHhcCCc---chhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccccchhHHHHHHHHHHHHHHHHhC
Confidence 0000000000101 11345566776655544 5899999999998 66788999999999999
Q ss_pred C-CcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 678 G-VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 678 g-~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
| +++++.++++++|.+.. ....+..++.||.++|+
T Consensus 249 G~~~v~~~~~~~g~H~~~~---w~~~l~~~l~~l~~~l~ 284 (304)
T 1sfr_A 249 GGHNGVFDFPDSGTHSWEY---WGAQLNAMKPDLQRALG 284 (304)
T ss_dssp TCCSEEEECCSCCCSSHHH---HHHHHHHTHHHHHHHHT
T ss_pred CCCceEEEecCCCccCHHH---HHHHHHHHHHHHHHhcC
Confidence 9 99999999777997532 23556778889988764
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-18 Score=170.65 Aligned_cols=213 Identities=18% Similarity=0.246 Sum_probs=132.3
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCce
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 561 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~ 561 (715)
|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... ......++..+.+..+++. ++.++
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~~-----~~~~~~~~~a~dl~~~l~~--l~~~~ 91 (277)
T 1brt_A 24 QPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRG---FGQSSQP-----TTGYDYDTFAADLNTVLET--LDLQD 91 (277)
T ss_dssp SEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CeEEEECCCCCc--HHHHHHHHHHHhhCCCEEEEeCCCC---CCCCCCC-----CCCccHHHHHHHHHHHHHH--hCCCc
Confidence 459999996654 5678888999999999999999999 6655321 1122344444444444443 23478
Q ss_pred EEEEEeChhHHHHHHHHhhCCC-ceeEEEecCCcchhhhhccCCCC---CCcee--------------eeccCCCCCCC-
Q 005093 562 VTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALMVGTTDI---PDWCY--------------VESYGSKGKDS- 622 (715)
Q Consensus 562 i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~~~~~~~~~~~~~---~~~~~--------------~~~~~~~~~~~- 622 (715)
+.|+||||||.+++.+|.++|+ +++++|++++............. ....+ ...+.......
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (277)
T 1brt_A 92 AVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLD 171 (277)
T ss_dssp EEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTHH
T ss_pred eEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHHHHHHHHHhcCchhhHHHHHHHHhhcc
Confidence 9999999999999999999999 99999999874321100000000 00000 00000000000
Q ss_pred --CCCCCChhhHHHHH------------------hcCchhhccCCCCcEEEEeeCCCCcCCchHH-HHHHHHHHHcCCcE
Q 005093 623 --FTESPSVEDLTRFH------------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVET 681 (715)
Q Consensus 623 --~~~~~~~~~~~~~~------------------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~~~~l~~~g~~~ 681 (715)
.......+..+.+. ..+....+.++++|+|+++|++|..+|++.+ ..+.+.+. ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~ 247 (277)
T 1brt_A 172 ENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALP----SA 247 (277)
T ss_dssp HHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHHCT----TS
T ss_pred ccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcccCCCCeEEEecCCCccCChHHHHHHHHHHCC----CC
Confidence 00000111111100 1122335678899999999999999998877 66666553 47
Q ss_pred EEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 682 KVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 682 ~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
++++++++||....+ ...++.+.|.+|++
T Consensus 248 ~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~ 276 (277)
T 1brt_A 248 EYVEVEGAPHGLLWT-HAEEVNTALLAFLA 276 (277)
T ss_dssp EEEEETTCCTTHHHH-THHHHHHHHHHHHH
T ss_pred cEEEeCCCCcchhhh-CHHHHHHHHHHHHh
Confidence 899999999986543 44578888999986
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=167.69 Aligned_cols=212 Identities=20% Similarity=0.283 Sum_probs=130.2
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.. .......+++.+.+..+++. ...+
T Consensus 27 g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~-----~~~~~~~~~~a~dl~~ll~~--l~~~ 94 (281)
T 3fob_A 27 GKPVVLIHGWPLS--GRSWEYQVPALVEAGYRVITYDRRG---FGKSSQ-----PWEGYEYDTFTSDLHQLLEQ--LELQ 94 (281)
T ss_dssp SEEEEEECCTTCC--GGGGTTTHHHHHHTTEEEEEECCTT---STTSCC-----CSSCCSHHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEECCCCCc--HHHHHHHHHHHHhCCCEEEEeCCCC---CCCCCC-----CccccCHHHHHHHHHHHHHH--cCCC
Confidence 4678999997655 5577778889999999999999999 555431 11223455666555555555 2457
Q ss_pred eEEEEEeChhHHHHHHHHhh-CCCceeEEEecCCcchhhhhcc-C-CCCCCce-------------------eeeccCCC
Q 005093 561 KVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVG-T-TDIPDWC-------------------YVESYGSK 618 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~~~~~~~~~~~-~-~~~~~~~-------------------~~~~~~~~ 618 (715)
++.|+||||||.+++.+++. +|++++++|++++......... . ....... +...+...
T Consensus 95 ~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (281)
T 3fob_A 95 NVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAA 174 (281)
T ss_dssp SEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSSTTCSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCB
T ss_pred cEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccccccccccchhHHHHHHHHhhhhHHHHHHHHHHHhccc
Confidence 89999999999877766555 5899999998876432100000 0 0000000 00000000
Q ss_pred CCCCCCCCCChhh-------------------HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHH-HHHHHHHcC
Q 005093 619 GKDSFTESPSVED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ-YARALREKG 678 (715)
Q Consensus 619 ~~~~~~~~~~~~~-------------------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~-~~~~l~~~g 678 (715)
.. ......... ...+...+....+.++++|+|+++|++|.++|++.+.+ +.+.+
T Consensus 175 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~---- 248 (281)
T 3fob_A 175 GD--RTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEAI---- 248 (281)
T ss_dssp TT--BCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCGGGTHHHHHHHS----
T ss_pred cc--ccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhhhhcCCCEEEEecCCCCCcCHHHHHHHHHHhC----
Confidence 00 000000000 01111223344578899999999999999999886633 33333
Q ss_pred CcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 679 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 679 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
...++++++++||....+ ...++.+.+.+||+
T Consensus 249 p~~~~~~i~~~gH~~~~e-~p~~~~~~i~~Fl~ 280 (281)
T 3fob_A 249 PNSKVALIKGGPHGLNAT-HAKEFNEALLLFLK 280 (281)
T ss_dssp TTCEEEEETTCCTTHHHH-THHHHHHHHHHHHC
T ss_pred CCceEEEeCCCCCchhhh-hHHHHHHHHHHHhh
Confidence 357899999999986543 34578888888885
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=174.75 Aligned_cols=225 Identities=14% Similarity=0.158 Sum_probs=142.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..+.....- +.|+||++||++.. ...|...+..|++ ||.|+++|+|| +|.+. .......
T Consensus 56 ~~~~~~~~~~g--------~~p~vv~lhG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G---~G~S~-----~~~~~~~ 116 (314)
T 3kxp_A 56 GRITLNVREKG--------SGPLMLFFHGITSN--SAVFEPLMIRLSD-RFTTIAVDQRG---HGLSD-----KPETGYE 116 (314)
T ss_dssp SSCEEEEEEEC--------CSSEEEEECCTTCC--GGGGHHHHHTTTT-TSEEEEECCTT---STTSC-----CCSSCCS
T ss_pred CCEEEEEEecC--------CCCEEEEECCCCCC--HHHHHHHHHHHHc-CCeEEEEeCCC---cCCCC-----CCCCCCC
Confidence 56666544332 26899999997654 4567777888877 69999999999 44442 1122334
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc-----c-CCCCCC-ceeee
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-----G-TTDIPD-WCYVE 613 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~-----~-~~~~~~-~~~~~ 613 (715)
.++..+.+..+++. ++.++++|+|||+||.+++.++.++|++++++|+++|........ . ...... +....
T Consensus 117 ~~~~~~dl~~~l~~--l~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (314)
T 3kxp_A 117 ANDYADDIAGLIRT--LARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVNAGSQLFEDIK 194 (314)
T ss_dssp HHHHHHHHHHHHHH--HTSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHHHTTTTCSCBSSHH
T ss_pred HHHHHHHHHHHHHH--hCCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHHHhhhchhhhcCHH
Confidence 66666666666655 234789999999999999999999999999999998865321110 0 000000 00000
Q ss_pred ccCCCCCCCCCCCCChhhHHHH---------------------------HhcCchhhccCCCCcEEEEeeCCCCcCCchH
Q 005093 614 SYGSKGKDSFTESPSVEDLTRF---------------------------HSKSPISHISKVKTPTIFLLGAQDLRVPVSN 666 (715)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~ 666 (715)
.........+.. ........+ ...+....+.++++|+|+++|++|..+|++.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~~~~~~ 273 (314)
T 3kxp_A 195 AVEAYLAGRYPN-IPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVLIVRGESSKLVSAAA 273 (314)
T ss_dssp HHHHHHHHHSTT-SCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEEEEEETTCSSSCHHH
T ss_pred HHHHHHHhhccc-CchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEEEEecCCCccCCHHH
Confidence 000000000000 000000000 0114445567889999999999999999988
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 667 GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 667 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+..+.+.+. .+++++++++||.+.... ...+.+.|.+||++
T Consensus 274 ~~~~~~~~~----~~~~~~~~g~gH~~~~e~-~~~~~~~i~~fl~~ 314 (314)
T 3kxp_A 274 LAKTSRLRP----DLPVVVVPGADHYVNEVS-PEITLKAITNFIDA 314 (314)
T ss_dssp HHHHHHHCT----TSCEEEETTCCSCHHHHC-HHHHHHHHHHHHHC
T ss_pred HHHHHHhCC----CceEEEcCCCCCcchhhC-HHHHHHHHHHHHhC
Confidence 887776663 367899999999875433 45788889999863
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=192.21 Aligned_cols=244 Identities=14% Similarity=0.095 Sum_probs=162.5
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHH-HHHHhCCcEEEEEcCCCCCCCchhhhhcCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLP 533 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~-~~~~~~~-~~la~~G~~vi~~d~rG~~~~g~~~~~~~~ 533 (715)
.+...||.+|.+.+|.|+ ..++.|+||++||.+..... ..|...+ +.|+++||+|+++|+||+++++..+.
T Consensus 13 ~i~~~DG~~L~~~~~~P~---~~~~~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~S~g~~~---- 85 (587)
T 3i2k_A 13 MVPMRDGVRLAVDLYRPD---ADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEFV---- 85 (587)
T ss_dssp EEECTTSCEEEEEEEEEC---CSSCEEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTTCCSCCC----
T ss_pred EEECCCCCEEEEEEEECC---CCCCeeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCCCCCCCCccc----
Confidence 345568899999999997 34678999999984433210 0122233 88999999999999999776654432
Q ss_pred CCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCc-chhhhhccC-CCCC----
Q 005093 534 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL-CNLALMVGT-TDIP---- 607 (715)
Q Consensus 534 ~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~-~~~~~~~~~-~~~~---- 607 (715)
. .....+|+.++++||.++...+ .+|+++|+||||++++.+++.+|+.++++|+.++. .++...... ....
T Consensus 86 -~-~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~~~gG~~~~~~ 162 (587)
T 3i2k_A 86 -P-HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVEA 162 (587)
T ss_dssp -T-TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCCCCHHH
T ss_pred -c-ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCcccccccceeecCCccccch
Confidence 1 2346899999999999887555 89999999999999999999989999999999998 664321100 0000
Q ss_pred --Cceeee------------------------------cc-CCCCC-------------CCC-CCCCChhhHHHHHhcCc
Q 005093 608 --DWCYVE------------------------------SY-GSKGK-------------DSF-TESPSVEDLTRFHSKSP 640 (715)
Q Consensus 608 --~~~~~~------------------------------~~-~~~~~-------------~~~-~~~~~~~~~~~~~~~sp 640 (715)
.|.... .+ ..... ..+ ...+ .....|...++
T Consensus 163 ~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~yw~~~s~ 240 (587)
T 3i2k_A 163 LLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHP--DNDESWQSISL 240 (587)
T ss_dssp HHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCC--SCCHHHHTTCC
T ss_pred HHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCC--CCChHHhcCCh
Confidence 011000 00 00000 000 1111 11234566777
Q ss_pred hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCC---------CCCchH---HHHHHHHH
Q 005093 641 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE---------RPQSDF---ESFLNIGL 708 (715)
Q Consensus 641 ~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---------~~~~~~---~~~~~i~~ 708 (715)
...+.+|++|+|+++|..|..+ ..+.+++++++..+. .++++-|. .|... .+.... +..+.+++
T Consensus 241 ~~~l~~I~vPvL~v~Gw~D~~~--~~~~~~~~~l~~~~~-~~L~iGPw-~H~~~~~~~g~~~~g~~~~~~~~~~~~~~~~ 316 (587)
T 3i2k_A 241 FERLGGLATPALITAGWYDGFV--GESLRTFVAVKDNAD-ARLVVGPW-SHSNLTGRNADRKFGIAATYPIQEATTMHKA 316 (587)
T ss_dssp HHHHTTCCCCEEEEEEEECTTH--HHHHHHHHHHTTTSC-EEEEEEEE-ETTBCSSEETTEECCGGGSCCHHHHHHHHHH
T ss_pred hhhhccCCCCEEEEccCCCccc--hHHHHHHHHHhhcCC-CEEEECCc-cccCccccCCCcccCCccccccchhhHHHHH
Confidence 7789999999999999999875 557788899877655 36666665 35421 111111 33488999
Q ss_pred HHHHhcC
Q 005093 709 WFKKYCK 715 (715)
Q Consensus 709 wl~~~l~ 715 (715)
||++|||
T Consensus 317 wFD~~Lk 323 (587)
T 3i2k_A 317 FFDRHLR 323 (587)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9999996
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-18 Score=191.50 Aligned_cols=272 Identities=14% Similarity=0.108 Sum_probs=175.7
Q ss_pred ccceEEeeCCCCceEEEEecC--CCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeec--CCCCe-EEEEeec
Q 005093 43 TGASAVVPSPSGSKLLVVRNP--ENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN--SDETL-IAYVAEE 117 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wS--pDg~~-la~~~~~ 117 (715)
..+..|++|+| +++|+..+ +++...+|.+..+++.++++.....+...+...+. ..+.|| |||++ |+|....
T Consensus 24 ~~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 24 GRPACVGAVGD--EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSG-FPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp SCCEEEEEETT--EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCC-CCEEEECCSSSSCEEEEEBTT
T ss_pred CccceeEEcCC--eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCC-ccceeeeecCCCeEEEEEECC
Confidence 56888999965 78888763 33444566554566666655433222111111110 145566 99999 9986432
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc--C-CceEeecCCC---CCCccceEEE
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--S-GEVQAVKGIP---KSLSVGQVVW 191 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~-g~~~~l~~~~---~~~~~~~~~~ 191 (715)
..+||+++++ + ++.++++... .......++|
T Consensus 101 -------------------------------------------~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 137 (662)
T 3azo_A 101 -------------------------------------------DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL 137 (662)
T ss_dssp -------------------------------------------TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE
T ss_pred -------------------------------------------CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE
Confidence 2569999998 6 8888884211 3345678999
Q ss_pred ecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC------CCceecC-CCCcccc
Q 005093 192 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED------LPVVNLT-ESISSAF 264 (715)
Q Consensus 192 spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~lt-~~~~~~~ 264 (715)
||||+. |+|.+....... ......+||++|+ .+ ++.+.++ .......
T Consensus 138 spDg~~----l~~~~~~~~~~~-----~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~ 191 (662)
T 3azo_A 138 LPERGE----VWCMAEEFTGEG-----PSDVRRFLAAVPL-----------------DGSAAADRSAVRELSDDAHRFVT 191 (662)
T ss_dssp ETTTTE----EEEEEEEECSSS-----TTCEEEEEEEEET-----------------TSTTTTCGGGSEESSCSCSSEEC
T ss_pred CCCCCE----EEEEEecccCCC-----CCCceeEEEEEEC-----------------CCCccccCCceeEEEecCCCccc
Confidence 999999 999874311000 0012247999997 66 7788888 7667788
Q ss_pred ceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecC-CC---CCCCcccceeeeeeceecCCCCCccccccCCCCCCcc
Q 005093 265 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP-TN---GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 340 (715)
Q Consensus 265 ~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~-~~---~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 340 (715)
.|+|||||++|+|.+..... ......+||++|+. ++ ..+.++... ......+.|
T Consensus 192 ~~~~SpDG~~la~~~~~~~~---~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-------------------~~~~~~~~~ 249 (662)
T 3azo_A 192 GPRLSPDGRQAVWLAWDHPR---MPWEGTELKTARVTEDGRFADTRTLLGGP-------------------EEAIAQAEW 249 (662)
T ss_dssp CCEECTTSSEEEEEEECTTC---CTTTCEEEEEEEECTTSCEEEEEEEEEET-------------------TBCEEEEEE
T ss_pred CceECCCCCEEEEEECCCCC---CCCCCcEEEEEEECCCCcccccEEeCCCC-------------------CceEcceEE
Confidence 89999999999999866421 11234679999998 44 222332110 012345679
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCc---------eeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 341 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF---------SWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 341 ~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~---------~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
+|||+ +++++...+...||.+|+++++.++++...... ....++++ +.++++... .-..|+.+++.+
T Consensus 250 spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~-~~~~~~~~~--~~~~l~~~d~~~ 325 (662)
T 3azo_A 250 APDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLAN-GLIAVVHGK--GAAVLGILDPES 325 (662)
T ss_dssp CTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTT-SCEEEEEBS--SSCEEEEEETTT
T ss_pred CCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCC-CEEEEEEEc--CccEEEEEECCC
Confidence 99999 888887777779999999999999888754322 12334444 456666655 556788888754
Q ss_pred c
Q 005093 412 K 412 (715)
Q Consensus 412 ~ 412 (715)
+
T Consensus 326 ~ 326 (662)
T 3azo_A 326 G 326 (662)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.6e-18 Score=170.35 Aligned_cols=231 Identities=13% Similarity=0.136 Sum_probs=139.2
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~-~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
.+|.+++...+-| ...|.||++||.+.. ...|.. .+..|+++||.|+++|+|| +|.+.... + ....
T Consensus 8 ~~g~~l~y~~~G~------~~~~~vvllHG~~~~--~~~w~~~~~~~L~~~G~~vi~~D~rG---~G~S~~~~-~-~~~~ 74 (298)
T 1q0r_A 8 SGDVELWSDDFGD------PADPALLLVMGGNLS--ALGWPDEFARRLADGGLHVIRYDHRD---TGRSTTRD-F-AAHP 74 (298)
T ss_dssp ETTEEEEEEEESC------TTSCEEEEECCTTCC--GGGSCHHHHHHHHTTTCEEEEECCTT---STTSCCCC-T-TTSC
T ss_pred cCCeEEEEEeccC------CCCCeEEEEcCCCCC--ccchHHHHHHHHHhCCCEEEeeCCCC---CCCCCCCC-C-CcCC
Confidence 3677776554432 234689999996654 456766 4488999999999999999 55543200 0 1112
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc-hhhhh-----------c-cCCC
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLALM-----------V-GTTD 605 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~-~~~~~-----------~-~~~~ 605 (715)
..++++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|++++.. ..... . ....
T Consensus 75 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (298)
T 1q0r_A 75 YGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLDGLP 152 (298)
T ss_dssp CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSSCSC
T ss_pred cCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccCCCcccccchhhhhhhhhhhcccc
Confidence 3455555555555554 245789999999999999999999999999999988754 21000 0 0000
Q ss_pred CCCceeeecc-C----CCCC----C-------CC--CCC-CChhhHH-----HHH-----------------hcCchhh-
Q 005093 606 IPDWCYVESY-G----SKGK----D-------SF--TES-PSVEDLT-----RFH-----------------SKSPISH- 643 (715)
Q Consensus 606 ~~~~~~~~~~-~----~~~~----~-------~~--~~~-~~~~~~~-----~~~-----------------~~sp~~~- 643 (715)
.........+ . .... . .+ ... ....... .+. ..+....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (298)
T 1q0r_A 153 GPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAE 232 (298)
T ss_dssp CCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGGGGG
T ss_pred cccHHHHHHHhccCcccccHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhccCCccchhhhhhhhhcCccccccc
Confidence 0000000000 0 0000 0 00 000 0000000 000 0011224
Q ss_pred ccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 644 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 644 ~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+.++++|+|+++|++|..+|++.+..+.+.+. ..++++++++|| .. ..++.+.+.+|+++++
T Consensus 233 l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~gH--e~---p~~~~~~i~~fl~~~~ 294 (298)
T 1q0r_A 233 LREVTVPTLVIQAEHDPIAPAPHGKHLAGLIP----TARLAEIPGMGH--AL---PSSVHGPLAEVILAHT 294 (298)
T ss_dssp GGGCCSCEEEEEETTCSSSCTTHHHHHHHTST----TEEEEEETTCCS--SC---CGGGHHHHHHHHHHHH
T ss_pred ccccCCCEEEEEeCCCccCCHHHHHHHHHhCC----CCEEEEcCCCCC--CC---cHHHHHHHHHHHHHHh
Confidence 67889999999999999999888777665543 478999999999 22 2467888999998764
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=164.56 Aligned_cols=227 Identities=15% Similarity=0.233 Sum_probs=141.0
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
...+|.+++....-+ +..|+||++||.+.. ...|...+..|++ +|.|+++|+|| ||.+... ..
T Consensus 10 ~~~~g~~l~y~~~G~------~~~p~lvl~hG~~~~--~~~w~~~~~~L~~-~~~vi~~D~rG---~G~S~~~-----~~ 72 (266)
T 3om8_A 10 ATSDGASLAYRLDGA------AEKPLLALSNSIGTT--LHMWDAQLPALTR-HFRVLRYDARG---HGASSVP-----PG 72 (266)
T ss_dssp ECTTSCEEEEEEESC------TTSCEEEEECCTTCC--GGGGGGGHHHHHT-TCEEEEECCTT---STTSCCC-----CS
T ss_pred eccCCcEEEEEecCC------CCCCEEEEeCCCccC--HHHHHHHHHHhhc-CcEEEEEcCCC---CCCCCCC-----CC
Confidence 345788887555432 246889999996544 5578888888865 79999999999 6655321 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh----------hccCCCCC
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----------MVGTTDIP 607 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~----------~~~~~~~~ 607 (715)
...++++.+.+..+++.- ..+++.|+||||||.+++.+|.++|++++++|++++...... ........
T Consensus 73 ~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
T 3om8_A 73 PYTLARLGEDVLELLDAL--EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDMS 150 (266)
T ss_dssp CCCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHHHHCSSSH
T ss_pred CCCHHHHHHHHHHHHHHh--CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHHHccccHH
Confidence 234555555555555542 346899999999999999999999999999999876432100 00000000
Q ss_pred Cce--eeeccCCCCCCCCCCCCC-hhhH----------------HHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHH
Q 005093 608 DWC--YVESYGSKGKDSFTESPS-VEDL----------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 668 (715)
Q Consensus 608 ~~~--~~~~~~~~~~~~~~~~~~-~~~~----------------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~ 668 (715)
... ....+.... .....+. .+.. ..+...+....+.++++|+|+++|++|.++|++.+.
T Consensus 151 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi~G~~D~~~~~~~~~ 228 (266)
T 3om8_A 151 ETAAGFLGNWFPPA--LLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGE 228 (266)
T ss_dssp HHHHHHHHHHSCHH--HHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEEEETTCSSSCHHHHH
T ss_pred HHHHHHHHHhcChh--hhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEEEeCCCCCCCHHHHH
Confidence 000 000000000 0000000 0000 001112223456789999999999999999998888
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 669 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 669 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
.+.+.+. ..++++++ +||.... +...++.+.+.+|++
T Consensus 229 ~l~~~ip----~a~~~~i~-~gH~~~~-e~p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 229 LIAASIA----GARLVTLP-AVHLSNV-EFPQAFEGAVLSFLG 265 (266)
T ss_dssp HHHHHST----TCEEEEES-CCSCHHH-HCHHHHHHHHHHHHT
T ss_pred HHHHhCC----CCEEEEeC-CCCCccc-cCHHHHHHHHHHHhc
Confidence 7777664 36888897 7997653 344577888888885
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-18 Score=177.65 Aligned_cols=140 Identities=10% Similarity=0.024 Sum_probs=102.7
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC------------ccch----HHHHHHHhCCcEEEEEcCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL------------SSYS----KSLAFLSSVGYSLLIVNYR 519 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~------------~~~~----~~~~~la~~G~~vi~~d~r 519 (715)
.+...+|.++.++++.|++. .++.|+||++||.+..... ..|. ..++.|+++||+|+++|+|
T Consensus 91 ~~~~~~g~~l~~~l~~P~~~--~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G~~Vl~~D~r 168 (391)
T 3g8y_A 91 EFYPFPKSVSTFLVLKPEHL--KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNA 168 (391)
T ss_dssp EECCSTTCCEEEEEEEETTC--CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTTCEEEECCCT
T ss_pred EEEcCCCCEEEEEEEeCCCC--CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCCCEEEEecCC
Confidence 55667889999999999742 5689999999996543210 0112 5678899999999999999
Q ss_pred CCCCCchhhhhcC----------------CCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC
Q 005093 520 GSLGFGEEALQSL----------------PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 583 (715)
Q Consensus 520 G~~~~g~~~~~~~----------------~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 583 (715)
|.++.+....... ...+....+.|+.+++++|.+++.+|.+||+|+||||||++++.+++. ++
T Consensus 169 g~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~al~~a~~-~~ 247 (391)
T 3g8y_A 169 AAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVL-DK 247 (391)
T ss_dssp TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHHHHHHHH-CT
T ss_pred CccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHHHHHHHc-CC
Confidence 9554332210000 000111123788999999999988999999999999999999988886 56
Q ss_pred ceeEEEecCCcchhh
Q 005093 584 KFVAAAARNPLCNLA 598 (715)
Q Consensus 584 ~~~~~v~~~~~~~~~ 598 (715)
+++++|+.++++.+.
T Consensus 248 ~i~a~v~~~~~~~~~ 262 (391)
T 3g8y_A 248 DIYAFVYNDFLCQTQ 262 (391)
T ss_dssp TCCEEEEESCBCCHH
T ss_pred ceeEEEEccCCCCcc
Confidence 899999888877664
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=170.57 Aligned_cols=232 Identities=14% Similarity=0.117 Sum_probs=144.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
.|.++..+ |.|.+ .|+||++||++.......|.. ..+.+++.|+.|+++|++++..+.. +.. . ...
T Consensus 21 ~~~~~~~~-~~P~~------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~~~~~-~~~--~-~~~ 89 (280)
T 1r88_A 21 MGRDIPVA-FLAGG------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYTN-WEQ--D-GSK 89 (280)
T ss_dssp TTEEEEEE-EECCS------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTTSB-CSS--C-TTC
T ss_pred cCCcceEE-EeCCC------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCCccCC-CCC--C-CCC
Confidence 56778877 77863 289999999753222334443 4566788999999999976543311 100 0 001
Q ss_pred ccchhh-H-HHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeecc
Q 005093 538 SQDVND-V-LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 615 (715)
Q Consensus 538 ~~~~~d-~-~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (715)
...+ + .+++.++.++..+++++++|+|+||||++++.++.++|++|+++++++|..++............ ....
T Consensus 90 --~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~~~--~~~~ 165 (280)
T 1r88_A 90 --QWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAG--MQQF 165 (280)
T ss_dssp --BHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHHHHHHH--HHHH
T ss_pred --cHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCccchhhHHHH--hhhc
Confidence 1222 1 23444555544477789999999999999999999999999999999998764321000000000 0000
Q ss_pred CCCCCCCCCCCCChhhHHHHHhcCchhhccCC---CCcEEEEe----eCCCCc-------CCchHHHHHHHHHHHcC-Cc
Q 005093 616 GSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLL----GAQDLR-------VPVSNGLQYARALREKG-VE 680 (715)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Lii~----G~~D~~-------v~~~~~~~~~~~l~~~g-~~ 680 (715)
+......+.+.+ ....+...+|...+.++ .+|+++.+ |+.|.. ++..++++++++|++.| ++
T Consensus 166 ~~~~~~~~~g~~---~~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~~~~~L~~~g~~~ 242 (280)
T 1r88_A 166 GGVDTNGMWGAP---QLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHN 242 (280)
T ss_dssp HCCCTHHHHCCG---GGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cccchhhhcCCC---chhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHHHHHHHHHHCCCcc
Confidence 000000000000 11234456666555544 57999999 999984 57889999999999999 99
Q ss_pred EEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 681 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 681 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+++.++++++|.+... ...+...+.|+.+-
T Consensus 243 ~~~~~~~~g~H~~~~w---~~~l~~~l~~~~~~ 272 (280)
T 1r88_A 243 GHFDFPASGDNGWGSW---APQLGAMSGDIVGA 272 (280)
T ss_dssp EEEECCSSCCSSHHHH---HHHHHHHHHHHHHH
T ss_pred eEEEecCCCCcChhHH---HHHHHHHHHHHHHH
Confidence 9999988889976422 23455566666543
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=177.98 Aligned_cols=232 Identities=16% Similarity=0.207 Sum_probs=142.6
Q ss_pred ccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 457 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
+.+.+|..++.... +..|+||++||++.. ...|...+..|+++||.|+++|+|| +|.+.. ..
T Consensus 8 ~~~~dG~~l~y~~~--------G~gp~VV~lHG~~~~--~~~~~~l~~~La~~Gy~Vi~~D~rG---~G~S~~-----~~ 69 (456)
T 3vdx_A 8 QENSTSIDLYYEDH--------GTGVPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRG---FGQSSQ-----PT 69 (456)
T ss_dssp EETTEEEEEEEEEE--------SSSEEEEEECCTTCC--GGGGTTHHHHHHHHTEEEEEECCTT---STTSCC-----CS
T ss_pred ccccCCeEEEEEEe--------CCCCEEEEECCCCCc--HHHHHHHHHHHHHCCcEEEEECCCC---CCCCCC-----CC
Confidence 34556777763221 145899999997655 4567788899999999999999999 554431 11
Q ss_pred CccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-CCceeEEEecCCcchhhhhccCCCCCC-------
Q 005093 537 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTTDIPD------- 608 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~~~~~~~~~~~~~~------- 608 (715)
....+++..+.+..+++. ++.++++|+|||+||.+++.+++.+ |++++++|+++|...............
T Consensus 70 ~~~s~~~~a~dl~~~l~~--l~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~~~~~~~~~~~ 147 (456)
T 3vdx_A 70 TGYDYDTFAADLNTVLET--LDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAAPQEFFD 147 (456)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCCSCSBCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccccccchHHHHH
Confidence 122344444444444443 2457899999999999888888876 899999999998764211100000000
Q ss_pred ----------cee----eeccCCCCCCCCCCCCChhhHHHHH------------------hcCchhhccCCCCcEEEEee
Q 005093 609 ----------WCY----VESYGSKGKDSFTESPSVEDLTRFH------------------SKSPISHISKVKTPTIFLLG 656 (715)
Q Consensus 609 ----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~sp~~~~~~i~~P~Lii~G 656 (715)
..+ ...+... ...............+. ..+....+.++++|+|+++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~PvLiI~G 226 (456)
T 3vdx_A 148 GIVAAVKADRYAFYTGFFNDFYNL-DENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHG 226 (456)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTT-TTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTTCCSCCEEEEE
T ss_pred HHHHhhhccchHHHHHHHHHHhcc-cccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhhCCCCEEEEEe
Confidence 000 0000000 00000000001111000 11233456788999999999
Q ss_pred CCCCcCCch-HHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 657 AQDLRVPVS-NGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 657 ~~D~~v~~~-~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
++|..+|++ ....+.+. ...+++++++++||.+.. +....+.+.+.+||++++
T Consensus 227 ~~D~~vp~~~~~~~l~~~----~~~~~~~~i~gagH~~~~-e~p~~v~~~I~~FL~~~l 280 (456)
T 3vdx_A 227 TGDRTLPIENTARVFHKA----LPSAEYVEVEGAPHGLLW-THAEEVNTALLAFLAKAL 280 (456)
T ss_dssp TTCSSSCGGGTHHHHHHH----CTTSEEEEETTCCSCTTT-TTHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHH----CCCceEEEeCCCCCcchh-hCHHHHHHHHHHHHHHhh
Confidence 999999988 44434333 245789999999998665 456688999999998865
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-18 Score=169.98 Aligned_cols=217 Identities=14% Similarity=0.140 Sum_probs=133.5
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
+.|.||++||.+.. ...|...+..|++ +||.|+++|+|| +|.+..... ...+++.+.+..+++.. .+
T Consensus 20 ~~~~vv~lhG~~~~--~~~~~~~~~~l~~~~g~~v~~~d~~G---~G~s~~~~~------~~~~~~~~~~~~~l~~~-~~ 87 (272)
T 3fsg_A 20 SGTPIIFLHGLSLD--KQSTCLFFEPLSNVGQYQRIYLDLPG---MGNSDPISP------STSDNVLETLIEAIEEI-IG 87 (272)
T ss_dssp CSSEEEEECCTTCC--HHHHHHHHTTSTTSTTSEEEEECCTT---STTCCCCSS------CSHHHHHHHHHHHHHHH-HT
T ss_pred CCCeEEEEeCCCCc--HHHHHHHHHHHhccCceEEEEecCCC---CCCCCCCCC------CCHHHHHHHHHHHHHHH-hC
Confidence 45789999996644 4467677777776 799999999999 554432111 33444444443333321 23
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCC----CCC---CCCChhh
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD----SFT---ESPSVED 631 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~ 631 (715)
.+++.|+|||+||.+++.++.++|++++++|+++|.....................+...... .+. .......
T Consensus 88 ~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (272)
T 3fsg_A 88 ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSMNVIINNQA 167 (272)
T ss_dssp TCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCCCTTGGGHHHHHHHCSEESHHH
T ss_pred CCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhcccCHHHHHHHHHHhccCCCch
Confidence 478999999999999999999999999999999987532221111110000000000000000 000 0000000
Q ss_pred HHHHH-------------------h-----cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeC
Q 005093 632 LTRFH-------------------S-----KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 687 (715)
Q Consensus 632 ~~~~~-------------------~-----~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (715)
...+. . ..+...+.++++|+|+++|++|..+|++.+..+.+.+ ..+++++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~ 243 (272)
T 3fsg_A 168 WHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMVGRNDQVVGYQEQLKLINHN----ENGEIVLLN 243 (272)
T ss_dssp HHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEEETTCTTTCSHHHHHHHTTC----TTEEEEEES
T ss_pred hHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEEeCCCCcCCHHHHHHHHHhc----CCCeEEEec
Confidence 00000 0 0011134678999999999999999998887766555 348899999
Q ss_pred CCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 688 NDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 688 ~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
++||.+... ...++.+.+.+||++.
T Consensus 244 ~~gH~~~~~-~~~~~~~~i~~fl~~~ 268 (272)
T 3fsg_A 244 RTGHNLMID-QREAVGFHFDLFLDEL 268 (272)
T ss_dssp SCCSSHHHH-THHHHHHHHHHHHHHH
T ss_pred CCCCCchhc-CHHHHHHHHHHHHHHh
Confidence 999987643 3457888999999875
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=172.39 Aligned_cols=217 Identities=15% Similarity=0.121 Sum_probs=141.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHH-HHhCC---cEEEEEcCCCCCCCchh--hhhcCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAF-LSSVG---YSLLIVNYRGSLGFGEE--ALQSLPG 534 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~-la~~G---~~vi~~d~rG~~~~g~~--~~~~~~~ 534 (715)
.|.++..++|+|+++++.+++|+|+++||++.......+...... .++.| ++|+++|+++...++.. .....+.
T Consensus 28 ~g~~~~~~v~~P~~~~~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~~~~~~~~~~~~r~~~~~~~ 107 (275)
T 2qm0_A 28 EGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAFSGEERCYDFTPS 107 (275)
T ss_dssp TCCEEEEEEECCSSCCCTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEECSCSSSCCHHHHHHHHCSS
T ss_pred CCCEEEEEEECCCCCCCCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEECCCCCCcCcccccccccCCC
Confidence 578899999999988777899999999996531111112112222 24567 99999999975433211 0000110
Q ss_pred ----------------CCC-ccchhhHH--HHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 535 ----------------KVG-SQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 535 ----------------~~~-~~~~~d~~--~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
..+ .....+.. +.+.++.++..+|+++++|+||||||++++.++.++|++|+++++.+|.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~~~~~~p~~f~~~~~~s~~~ 187 (275)
T 2qm0_A 108 VISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFTNLNAFQNYFISSPSI 187 (275)
T ss_dssp CCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCT
T ss_pred CccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHHHHHhCchhhceeEEeCcee
Confidence 011 01222222 33455556555788999999999999999999999999999999999976
Q ss_pred hhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHH-
Q 005093 596 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL- 674 (715)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l- 674 (715)
.+.... +. ...+.+.... ......+|++++||+.|..++..++++++++|
T Consensus 188 ~~~~~~-------------~~-------------~~~~~~~~~~---~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~L~ 238 (275)
T 2qm0_A 188 WWNNKS-------------VL-------------EKEENLIIEL---NNAKFETGVFLTVGSLEREHMVVGANELSERLL 238 (275)
T ss_dssp THHHHG-------------GG-------------GGTTHHHHHH---HTCSSCEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred eeChHH-------------HH-------------HHHHHHHhhh---cccCCCceEEEEeCCcccchhhHHHHHHHHHHH
Confidence 432110 00 0000111000 02345679999999999988889999999999
Q ss_pred --HHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHH
Q 005093 675 --REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 675 --~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 710 (715)
++.|.++++.++++++|+.. ....+...+.||
T Consensus 239 ~~~~~g~~~~~~~~~g~~H~~~----~~~~l~~~l~~l 272 (275)
T 2qm0_A 239 QVNHDKLKFKFYEAEGENHASV----VPTSLSKGLRFI 272 (275)
T ss_dssp HCCCTTEEEEEEEETTCCTTTH----HHHHHHHHHHHH
T ss_pred hcccCCceEEEEECCCCCcccc----HHHHHHHHHHHH
Confidence 55688999999999999643 233455566665
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.5e-18 Score=170.02 Aligned_cols=230 Identities=13% Similarity=0.111 Sum_probs=142.6
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
.+|..++...+-|+ ..|.||++||.+.. .. .|...+..| ++||.|+++|+|| +|.+... +.....
T Consensus 10 ~~g~~l~~~~~G~~------~~~~vvllHG~~~~--~~~~w~~~~~~L-~~~~~vi~~Dl~G---~G~S~~~--~~~~~~ 75 (286)
T 2yys_A 10 VGEAELYVEDVGPV------EGPALFVLHGGPGG--NAYVLREGLQDY-LEGFRVVYFDQRG---SGRSLEL--PQDPRL 75 (286)
T ss_dssp CSSCEEEEEEESCT------TSCEEEEECCTTTC--CSHHHHHHHGGG-CTTSEEEEECCTT---STTSCCC--CSCGGG
T ss_pred ECCEEEEEEeecCC------CCCEEEEECCCCCc--chhHHHHHHHHh-cCCCEEEEECCCC---CCCCCCC--ccCccc
Confidence 36777775555332 35789999997655 45 677777777 5689999999999 6655310 111012
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh----hc-cC--CCCCC-ce
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----MV-GT--TDIPD-WC 610 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~----~~-~~--~~~~~-~~ 610 (715)
..+++..+.+..+++.- ..+++.|+||||||.+++.+|.++|+ ++++|++++...... .. .. ..... ..
T Consensus 76 ~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (286)
T 2yys_A 76 FTVDALVEDTLLLAEAL--GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAEAAGLAPLPDPEE 152 (286)
T ss_dssp CCHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHHHTTCCCCSCHHH
T ss_pred CcHHHHHHHHHHHHHHh--CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHHHhccccchhHHH
Confidence 34556665555555542 34789999999999999999999999 999999998653211 00 00 00000 00
Q ss_pred -e------------eec--cCCC-------CC-CCCCCCCChhhHHH-----HHhcCchhhccCCCCcEEEEeeCCCCcC
Q 005093 611 -Y------------VES--YGSK-------GK-DSFTESPSVEDLTR-----FHSKSPISHISKVKTPTIFLLGAQDLRV 662 (715)
Q Consensus 611 -~------------~~~--~~~~-------~~-~~~~~~~~~~~~~~-----~~~~sp~~~~~~i~~P~Lii~G~~D~~v 662 (715)
. ... +... .. ..+........... ....+....+.++++|+|+++|++|..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~ 232 (286)
T 2yys_A 153 NLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTPERRPLYVLVGERDGTS 232 (286)
T ss_dssp HHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCCCSSCEEEEEETTCTTT
T ss_pred HHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhhcCCCEEEEEeCCCCcC
Confidence 0 000 0000 00 00000000000000 0111233456788999999999999999
Q ss_pred CchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 663 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 663 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+++ +..+.+ +.. .++++++++||....+. ..++.+.|.+|+++.
T Consensus 233 ~~~-~~~~~~-~~~----~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~~ 276 (286)
T 2yys_A 233 YPY-AEEVAS-RLR----APIRVLPEAGHYLWIDA-PEAFEEAFKEALAAL 276 (286)
T ss_dssp TTT-HHHHHH-HHT----CCEEEETTCCSSHHHHC-HHHHHHHHHHHHHTT
T ss_pred CHh-HHHHHh-CCC----CCEEEeCCCCCCcChhh-HHHHHHHHHHHHHhh
Confidence 998 888877 653 57889999999866444 457889999999763
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=9.9e-18 Score=166.88 Aligned_cols=221 Identities=12% Similarity=0.044 Sum_probs=136.9
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
..|+||++||.+.. ...|...+..|++ ||.|+++|+|| +|.+...... ......++++.+.+..+++. .+.
T Consensus 19 ~~p~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~D~~G---~G~S~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~ 89 (269)
T 4dnp_A 19 GERVLVLAHGFGTD--QSAWNRILPFFLR-DYRVVLYDLVC---AGSVNPDFFD-FRRYTTLDPYVDDLLHILDA--LGI 89 (269)
T ss_dssp CSSEEEEECCTTCC--GGGGTTTGGGGTT-TCEEEEECCTT---STTSCGGGCC-TTTCSSSHHHHHHHHHHHHH--TTC
T ss_pred CCCEEEEEeCCCCc--HHHHHHHHHHHhC-CcEEEEEcCCC---CCCCCCCCCC-ccccCcHHHHHHHHHHHHHh--cCC
Confidence 45899999996654 4567777778877 99999999999 5544221111 11122455666666555555 245
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCce----eeeccCCC-------CCCCCCCCCC
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC----YVESYGSK-------GKDSFTESPS 628 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~ 628 (715)
++++|+|||+||.+++.++.++|++++++|+++|................. ........ ..........
T Consensus 90 ~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
T 4dnp_A 90 DCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADV 169 (269)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCSSC
T ss_pred CeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhhccCCC
Confidence 689999999999999999999999999999999864321110000000000 00000000 0000000000
Q ss_pred hhh-------------------HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCC
Q 005093 629 VED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 689 (715)
Q Consensus 629 ~~~-------------------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (715)
... ...+...+....+.++++|+|+++|++|..+|.+.+..+.+.+.. .+++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 246 (269)
T 4dnp_A 170 PAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGG---KNTVHWLNIE 246 (269)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBCHHHHHHHHHHSSS---CEEEEEEEEE
T ss_pred hhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccCHHHHHHHHHhCCC---CceEEEeCCC
Confidence 000 011112234456778899999999999999999888777766532 2789999999
Q ss_pred CccCCCCCchHHHHHHHHHHHHHh
Q 005093 690 VHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 690 ~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
||..... ...++.+.|.+||+++
T Consensus 247 gH~~~~~-~p~~~~~~i~~fl~~~ 269 (269)
T 4dnp_A 247 GHLPHLS-APTLLAQELRRALSHR 269 (269)
T ss_dssp SSCHHHH-CHHHHHHHHHHHHC--
T ss_pred CCCcccc-CHHHHHHHHHHHHhhC
Confidence 9986543 3457888899998753
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=159.66 Aligned_cols=203 Identities=12% Similarity=0.102 Sum_probs=133.5
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHh--CCcEEEEEcCCCCCC------CchhhhhcCCCCC
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGSLG------FGEEALQSLPGKV 536 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~--~G~~vi~~d~rG~~~------~g~~~~~~~~~~~ 536 (715)
+...++.|+ .+..++||++||.+.. ...+...+..+.. .++.+++|+-+.... .+..|........
T Consensus 25 l~y~ii~P~----~~~~~~VI~LHG~G~~--~~dl~~l~~~l~~~~~~~~~i~P~Ap~~~~~~~~~~~~~~Wf~~~~~~~ 98 (246)
T 4f21_A 25 MNYELMEPA----KQARFCVIWLHGLGAD--GHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMRAWYDIKSLDA 98 (246)
T ss_dssp CCEEEECCS----SCCCEEEEEEEC--CC--CCCGGGGGGGCCSCCTTEEEEEECGGGSCTTTHHHHHHHSCTTCCCC--
T ss_pred cCceEeCCC----CcCCeEEEEEcCCCCC--HHHHHHHHHHhhhcCCCeEEEeCCCCccccccCCCCCcccccccccccc
Confidence 445577785 3346789999995544 3344444444432 468888887432110 0112211110000
Q ss_pred -------CccchhhHHHHHHHHHH---cCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCC
Q 005093 537 -------GSQDVNDVLTAIDHVID---MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI 606 (715)
Q Consensus 537 -------~~~~~~d~~~~i~~l~~---~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~ 606 (715)
....+....+.+..+++ ...++.+||+++|+|+||.+++.++.++|+.+++++++++.........
T Consensus 99 ~~~~~~~d~~~i~~~~~~i~~li~~~~~~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~~~~~---- 174 (246)
T 4f21_A 99 NSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAWDNFK---- 174 (246)
T ss_dssp -CGGGGSCCC-CHHHHHHHHHHHHHHHHC-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTHHHHS----
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHcCCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCcccccc----
Confidence 01112333333333332 2348999999999999999999999999999999999988542211000
Q ss_pred CCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEe
Q 005093 607 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 686 (715)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (715)
.... ....++|+|++||+.|++||++.++++++.|++.|.++++..|
T Consensus 175 -----------------------------~~~~----~~~~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~~y 221 (246)
T 4f21_A 175 -----------------------------GKIT----SINKGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYKHY 221 (246)
T ss_dssp -----------------------------TTCC----GGGTTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred -----------------------------cccc----ccccCCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 0000 0113579999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 687 PNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 687 ~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
++.||.+. .+.++.+.+||++.|+
T Consensus 222 ~g~gH~i~-----~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 222 VGMQHSVC-----MEEIKDISNFIAKTFK 245 (246)
T ss_dssp SSCCSSCC-----HHHHHHHHHHHHHHTT
T ss_pred CCCCCccC-----HHHHHHHHHHHHHHhC
Confidence 99999875 3567889999999885
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=158.00 Aligned_cols=181 Identities=14% Similarity=0.052 Sum_probs=124.1
Q ss_pred CCcEEEEEcCCCCCCC-CccchH-HHHHHHhC-CcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 480 CDPLIVVLHGGPHSVS-LSSYSK-SLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~-~~~~~~-~~~~la~~-G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
+.|.||++||++.... ...|.. ....|+++ ||.|+++|+||... .+....++.+.+...
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~------------------~~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPIT------------------ARESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTT------------------CCHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCc------------------ccHHHHHHHHHHHhC
Confidence 5689999999766532 234554 67788887 99999999998311 133445555555432
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHH
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 636 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (715)
. .++++|+|||+||.+++.++.++| ++++|+++|........ .... ..+...+.
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~----------~~~~-----~~~~~~~~-------- 118 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDE----------NERA-----SGYFTRPW-------- 118 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCH----------HHHH-----TSTTSSCC--------
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchh----------hhHH-----Hhhhcccc--------
Confidence 2 378999999999999999999988 99999999865321000 0000 00000010
Q ss_pred hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 637 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 637 ~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
....+..+.+|+|+++|++|..+|++.+..+.+.+ . .++++++++||.+.... .+.+.++++||++..
T Consensus 119 ---~~~~~~~~~~p~lii~G~~D~~vp~~~~~~~~~~~-~----~~~~~~~~~gH~~~~~~--p~~~~~~~~fl~~~~ 186 (194)
T 2qs9_A 119 ---QWEKIKANCPYIVQFGSTDDPFLPWKEQQEVADRL-E----TKLHKFTDCGHFQNTEF--HELITVVKSLLKVPA 186 (194)
T ss_dssp ---CHHHHHHHCSEEEEEEETTCSSSCHHHHHHHHHHH-T----CEEEEESSCTTSCSSCC--HHHHHHHHHHHTCCC
T ss_pred ---cHHHHHhhCCCEEEEEeCCCCcCCHHHHHHHHHhc-C----CeEEEeCCCCCccchhC--HHHHHHHHHHHHhhh
Confidence 11223345679999999999999999998888877 3 58899999999876433 356677889998653
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-18 Score=169.88 Aligned_cols=228 Identities=15% Similarity=0.205 Sum_probs=141.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..++...+-|. ..+.|.||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+.... ....
T Consensus 10 ~g~~l~y~~~g~~----~~~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~~G---~G~S~~~~-----~~~~ 74 (266)
T 2xua_A 10 NGTELHYRIDGER----HGNAPWIVLSNSLGTD--LSMWAPQVAALSK-HFRVLRYDTRG---HGHSEAPK-----GPYT 74 (266)
T ss_dssp SSSEEEEEEESCS----SSCCCEEEEECCTTCC--GGGGGGGHHHHHT-TSEEEEECCTT---STTSCCCS-----SCCC
T ss_pred CCEEEEEEEcCCc----cCCCCeEEEecCccCC--HHHHHHHHHHHhc-CeEEEEecCCC---CCCCCCCC-----CCCC
Confidence 6777876655332 1126889999995544 4567778888865 59999999999 66553211 1234
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh---hcc------CCCCCCc--
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL---MVG------TTDIPDW-- 609 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~---~~~------~~~~~~~-- 609 (715)
+++..+.+..+++. ...+++.|+||||||.+++.+|.++|++++++|++++...... ... .......
T Consensus 75 ~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (266)
T 2xua_A 75 IEQLTGDVLGLMDT--LKIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMHALAD 152 (266)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChHHHHH
Confidence 55555555555554 2346899999999999999999999999999999987542100 000 0000000
Q ss_pred eeeeccCCCC-C-------C----CCCCCCChhh----HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHH
Q 005093 610 CYVESYGSKG-K-------D----SFTESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 673 (715)
Q Consensus 610 ~~~~~~~~~~-~-------~----~~~~~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (715)
.....+.... . . .+... .... ...+...+....+.++++|+|+++|++|..+|++.+..+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~ 231 (266)
T 2xua_A 153 AVLPRWFTADYMEREPVVLAMIRDVFVHT-DKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHDLAATPAQGRELAQA 231 (266)
T ss_dssp HHHHHHSCHHHHHHCHHHHHHHHHHHHTS-CHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred HHHHHHcCcccccCCHHHHHHHHHHHhhC-CHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCCCCcCCHHHHHHHHHh
Confidence 0000000000 0 0 00000 0000 011112233445678899999999999999998887777666
Q ss_pred HHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 674 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 674 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+. ..++++++ +||....+. ..++.+.+.+||++
T Consensus 232 ~~----~~~~~~~~-~gH~~~~e~-p~~~~~~i~~fl~~ 264 (266)
T 2xua_A 232 IA----GARYVELD-ASHISNIER-ADAFTKTVVDFLTE 264 (266)
T ss_dssp ST----TCEEEEES-CCSSHHHHT-HHHHHHHHHHHHTC
T ss_pred CC----CCEEEEec-CCCCchhcC-HHHHHHHHHHHHHh
Confidence 53 36899999 999866443 45788889999864
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-17 Score=160.27 Aligned_cols=214 Identities=15% Similarity=0.200 Sum_probs=129.5
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccch-hhHHHHHHHHHHcCCCCC
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV-NDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~-~d~~~~i~~l~~~~~~d~ 559 (715)
.|.||++||.+.. ....|...+..|+++||.|+++|+|| +|.+... ...+..... .++.++++++.+. +.
T Consensus 23 ~~~vvllHG~~~~-~~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~--~~~~~~~~~~~~~~~~~~~l~~l---~~ 93 (254)
T 2ocg_A 23 DHAVLLLPGMLGS-GETDFGPQLKNLNKKLFTVVAWDPRG---YGHSRPP--DRDFPADFFERDAKDAVDLMKAL---KF 93 (254)
T ss_dssp SEEEEEECCTTCC-HHHHCHHHHHHSCTTTEEEEEECCTT---STTCCSS--CCCCCTTHHHHHHHHHHHHHHHT---TC
T ss_pred CCeEEEECCCCCC-CccchHHHHHHHhhCCCeEEEECCCC---CCCCCCC--CCCCChHHHHHHHHHHHHHHHHh---CC
Confidence 3679999995433 13357778888999999999999999 5554321 111111112 3344445555443 34
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh-----hccCCCCCCceeeeccCCCCCCCCCCCCC---hhh
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----MVGTTDIPDWCYVESYGSKGKDSFTESPS---VED 631 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 631 (715)
+++.|+||||||.+++.+|.++|++++++|++++...... .........|. ..........+..... +..
T Consensus 94 ~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 171 (254)
T 2ocg_A 94 KKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWS--ERTRKPLEALYGYDYFARTCEK 171 (254)
T ss_dssp SSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGGSC--HHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHHHH--HHhHHHHHHHhcchhhHHHHHH
Confidence 7899999999999999999999999999999887532110 00000000000 0000000000000000 000
Q ss_pred -HHHHHh-------cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHH
Q 005093 632 -LTRFHS-------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 703 (715)
Q Consensus 632 -~~~~~~-------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 703 (715)
...+.. ......+.++++|+|+++|++|..+|.+.+..+.+.+. ..++++++++||..... ....+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~e-~p~~~~ 246 (254)
T 2ocg_A 172 WVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVK----GSRLHLMPEGKHNLHLR-FADEFN 246 (254)
T ss_dssp HHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHST----TCEEEEETTCCTTHHHH-THHHHH
T ss_pred HHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCCHHHHHHHHHhCC----CCEEEEcCCCCCchhhh-CHHHHH
Confidence 000000 01233567899999999999999999888777766553 36899999999987643 345677
Q ss_pred HHHHHHH
Q 005093 704 LNIGLWF 710 (715)
Q Consensus 704 ~~i~~wl 710 (715)
+.+.+||
T Consensus 247 ~~i~~fl 253 (254)
T 2ocg_A 247 KLAEDFL 253 (254)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7888887
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=167.77 Aligned_cols=218 Identities=11% Similarity=0.118 Sum_probs=138.2
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCce
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 561 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~ 561 (715)
|+||++||.+.. ...|...+..|++ ||.|+++|+|| +|.+..... ........++..+.+..+++.. +.++
T Consensus 29 ~~vv~lHG~~~~--~~~~~~~~~~l~~-g~~v~~~d~~G---~G~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~ 99 (282)
T 3qvm_A 29 KTVLLAHGFGCD--QNMWRFMLPELEK-QFTVIVFDYVG---SGQSDLESF-STKRYSSLEGYAKDVEEILVAL--DLVN 99 (282)
T ss_dssp CEEEEECCTTCC--GGGGTTTHHHHHT-TSEEEECCCTT---STTSCGGGC-CTTGGGSHHHHHHHHHHHHHHT--TCCS
T ss_pred CeEEEECCCCCC--cchHHHHHHHHhc-CceEEEEecCC---CCCCCCCCC-CccccccHHHHHHHHHHHHHHc--CCCc
Confidence 899999996654 4567777888877 99999999999 444432211 0111224566666666666552 4578
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCce------eeeccCC-------CCCC-CCCCCC
Q 005093 562 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC------YVESYGS-------KGKD-SFTESP 627 (715)
Q Consensus 562 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------~~~~-~~~~~~ 627 (715)
++|+|||+||.+++.++.++|++++++|+++|........... ...+. ....... .... .+....
T Consensus 100 ~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T 3qvm_A 100 VSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDY-VGGFERDDLEELINLMDKNYIGWANYLAPLVMGASH 178 (282)
T ss_dssp EEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTE-ECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTTS
T ss_pred eEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhh-hchhccccHHHHHHHHhcchhhHHHHHHhhccCCcc
Confidence 9999999999999999999999999999999865322110000 00000 0000000 0000 000000
Q ss_pred Chhh-------------------HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC
Q 005093 628 SVED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 688 (715)
Q Consensus 628 ~~~~-------------------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (715)
.... .......+....+.++++|+|+++|++|..+|.+.+..+.+.+. ..+++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~ 254 (282)
T 3qvm_A 179 SSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENIP----NSQLELIQA 254 (282)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCCHHHHHHHHHHSS----SEEEEEEEE
T ss_pred chhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCCHHHHHHHHHhCC----CCcEEEecC
Confidence 0000 01111222335567889999999999999999888877766653 478999999
Q ss_pred CCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 689 DVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 689 ~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+||.+.... ..++.+.|.+||++..
T Consensus 255 ~gH~~~~~~-~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 255 EGHCLHMTD-AGLITPLLIHFIQNNQ 279 (282)
T ss_dssp ESSCHHHHC-HHHHHHHHHHHHHHC-
T ss_pred CCCcccccC-HHHHHHHHHHHHHhcC
Confidence 999865433 5578899999998753
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-17 Score=166.65 Aligned_cols=227 Identities=18% Similarity=0.160 Sum_probs=139.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
++..++.+..- .+..|+||++||++.. ...|...+..|++ ||.|+++|+||.+ |.+.. ......
T Consensus 53 ~~~~~~~~~~g------~~~~~~vv~lHG~~~~--~~~~~~~~~~L~~-g~~vi~~D~~G~g--G~s~~-----~~~~~~ 116 (306)
T 2r11_A 53 RFGQTHVIASG------PEDAPPLVLLHGALFS--STMWYPNIADWSS-KYRTYAVDIIGDK--NKSIP-----ENVSGT 116 (306)
T ss_dssp TTEEEEEEEES------CTTSCEEEEECCTTTC--GGGGTTTHHHHHH-HSEEEEECCTTSS--SSCEE-----CSCCCC
T ss_pred CCceEEEEeeC------CCCCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCCCC--CCCCC-----CCCCCC
Confidence 44566544432 2346889999997654 4457777888877 9999999999942 33221 111234
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc-------CCCCCCc--ee
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPDW--CY 611 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-------~~~~~~~--~~ 611 (715)
.+++.+.+..+++. ++.++++|+|||+||.+++.+|.++|++++++|+++|......... ......+ .+
T Consensus 117 ~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (306)
T 2r11_A 117 RTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVETF 194 (306)
T ss_dssp HHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHHHHHHHTTTSTTHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHHHHHHhHHHHHHHHHHH
Confidence 66666666666665 2457899999999999999999999999999999998765311000 0000000 00
Q ss_pred eeccCCCCCCCCCCCCChhhHHH------------------HHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHH
Q 005093 612 VESYGSKGKDSFTESPSVEDLTR------------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 673 (715)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (715)
...+.... ....+....... .........+.++++|+|+++|++|..+|++.+.++++.
T Consensus 195 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~ 271 (306)
T 2r11_A 195 LNWMMNDQ---NVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASS 271 (306)
T ss_dssp HHHHTTTC---CCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEEEEETTCCSSCHHHHHHHHHH
T ss_pred HHHhhCCc---cccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEEEEeCCCcccCHHHHHHHHHH
Confidence 00000000 000000000000 001122334667899999999999999998777655544
Q ss_pred HHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 674 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 674 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+ ...+++++++++||.+.... ..++.+.|.+||++
T Consensus 272 ~---~~~~~~~~~~~~gH~~~~e~-p~~~~~~i~~fl~~ 306 (306)
T 2r11_A 272 F---VPDIEAEVIKNAGHVLSMEQ-PTYVNERVMRFFNA 306 (306)
T ss_dssp H---STTCEEEEETTCCTTHHHHS-HHHHHHHHHHHHC-
T ss_pred H---CCCCEEEEeCCCCCCCcccC-HHHHHHHHHHHHhC
Confidence 3 23578999999999765433 45778888888853
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.8e-18 Score=171.07 Aligned_cols=227 Identities=15% Similarity=0.173 Sum_probs=142.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..+.....- +.|+||++||.+.. ...|...+..|.++||.|+++|+|| +|.+.. ......
T Consensus 17 ~g~~l~~~~~g--------~~~~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G---~G~S~~-----~~~~~~ 78 (309)
T 3u1t_A 17 EGATIAYVDEG--------SGQPVLFLHGNPTS--SYLWRNIIPYVVAAGYRAVAPDLIG---MGDSAK-----PDIEYR 78 (309)
T ss_dssp TTEEEEEEEEE--------CSSEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCC-----CSSCCC
T ss_pred CCeEEEEEEcC--------CCCEEEEECCCcch--hhhHHHHHHHHHhCCCEEEEEccCC---CCCCCC-----CCcccC
Confidence 56667544331 25789999997654 4567778888788999999999999 555432 111334
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc--------------CCCC
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG--------------TTDI 606 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~--------------~~~~ 606 (715)
.+++.+.+..+++. ...++++|+|||+||.+++.+|.++|++++++|+++|......... ....
T Consensus 79 ~~~~~~~~~~~~~~--~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
T 3u1t_A 79 LQDHVAYMDGFIDA--LGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDLRT 156 (309)
T ss_dssp HHHHHHHHHHHHHH--HTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH--cCCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHHHHHHhc
Confidence 66666666666554 2347899999999999999999999999999999887543210000 0000
Q ss_pred C---------CceeeeccCCCCCCCCCCCCChhhHHHHH-----------------hc--------------CchhhccC
Q 005093 607 P---------DWCYVESYGSKGKDSFTESPSVEDLTRFH-----------------SK--------------SPISHISK 646 (715)
Q Consensus 607 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------------sp~~~~~~ 646 (715)
+ ...+...+.... .............+. .. +....+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (309)
T 3u1t_A 157 ADVGEKMVLDGNFFVETILPEM--GVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWLMA 234 (309)
T ss_dssp TTHHHHHHTTTCHHHHTHHHHT--SCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHH
T ss_pred cchhhhhccccceehhhhcccc--cccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhhhccc
Confidence 0 000000000000 000000011111110 00 11123567
Q ss_pred CCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 647 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 647 i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+++|+|+++|++|..+|.+.+..+.+.+. ..++++++++||..... ...++.+.|.+||++..
T Consensus 235 i~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~-~p~~~~~~i~~fl~~~~ 297 (309)
T 3u1t_A 235 SPIPKLLFHAEPGALAPKPVVDYLSENVP----NLEVRFVGAGTHFLQED-HPHLIGQGIADWLRRNK 297 (309)
T ss_dssp CCSCEEEEEEEECSSSCHHHHHHHHHHST----TEEEEEEEEESSCHHHH-CHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEecCCCCCCCHHHHHHHHhhCC----CCEEEEecCCcccchhh-CHHHHHHHHHHHHHhcc
Confidence 89999999999999999887777766653 36777889999976543 45578889999998764
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=168.16 Aligned_cols=216 Identities=18% Similarity=0.244 Sum_probs=133.7
Q ss_pred CcEEEEEcCCC-CCCCCccchHHH-HHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 481 DPLIVVLHGGP-HSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 481 ~P~vv~iHGg~-~~~~~~~~~~~~-~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
.|.||++||.+ .......|...+ ..|++. |.|+++|+|| +|.+... .. ....+++..+.+..+++. .+
T Consensus 33 g~~vvllHG~~~~~~~~~~w~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~---~~-~~~~~~~~a~dl~~~l~~--l~ 102 (286)
T 2puj_A 33 GETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPG---FNKSDAV---VM-DEQRGLVNARAVKGLMDA--LD 102 (286)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHHHTT-CEEEEECCTT---STTSCCC---CC-SSCHHHHHHHHHHHHHHH--TT
T ss_pred CCcEEEECCCCCCCCcHHHHHHHHHHHHhcc-CEEEEECCCC---CCCCCCC---CC-cCcCHHHHHHHHHHHHHH--hC
Confidence 46899999964 222244566677 778765 9999999999 6655321 11 123466666666555555 24
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCC------------CCCceee----eccCCCCCCC
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYV----ESYGSKGKDS 622 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~~----~~~~~~~~~~ 622 (715)
.+++.|+||||||.+++.+|.++|++++++|+++|............ .+.+... ..+... ...
T Consensus 103 ~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 181 (286)
T 2puj_A 103 IDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYD-QSL 181 (286)
T ss_dssp CCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSC-GGG
T ss_pred CCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcC-Ccc
Confidence 57899999999999999999999999999999987542100000000 0000000 000000 000
Q ss_pred CCCC----------CChhhHHHHH---------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEE
Q 005093 623 FTES----------PSVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 683 (715)
Q Consensus 623 ~~~~----------~~~~~~~~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 683 (715)
.... ........+. ..+....+.++++|+|+++|++|..+|++.+..+.+.+. ..++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~----~~~~ 257 (286)
T 2puj_A 182 ITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID----DARL 257 (286)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSS----SEEE
T ss_pred CCHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhcCCCEEEEEECCCCccCHHHHHHHHHHCC----CCeE
Confidence 0000 0000000000 112234567889999999999999999988877766653 4789
Q ss_pred EEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 684 IVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 684 ~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
++++++||....+. ..++.+.+.+||++
T Consensus 258 ~~i~~~gH~~~~e~-p~~~~~~i~~fl~~ 285 (286)
T 2puj_A 258 HVFSKCGAWAQWEH-ADEFNRLVIDFLRH 285 (286)
T ss_dssp EEESSCCSCHHHHT-HHHHHHHHHHHHHH
T ss_pred EEeCCCCCCccccC-HHHHHHHHHHHHhc
Confidence 99999999765443 45788889999875
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.9e-17 Score=162.73 Aligned_cols=196 Identities=13% Similarity=0.006 Sum_probs=130.5
Q ss_pred ccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-----ccchHHHHHHHhCC----cEEEEEcCCCCCCCchh
Q 005093 457 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-----SSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEE 527 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~-----~~~~~~~~~la~~G----~~vi~~d~rG~~~~g~~ 527 (715)
+.+.++ .+.+++|+|++++..+++|+||++||++..... ..+...+..|+++| ++|+++|++|..+.+..
T Consensus 46 ~~s~~~-~~~~~vy~P~~~~~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~pd~~~~~~~~~~ 124 (297)
T 1gkl_A 46 YTGING-TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQN 124 (297)
T ss_dssp EEETTE-EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEECCSCSTTCCTTT
T ss_pred EEcCCC-EEEEEEEeCCCCCCCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEEecCcCCccchHH
Confidence 334444 899999999988767889999999997654321 12335667777764 99999999874322111
Q ss_pred hhhcCCCCCCccchhhHHHHHHHHHHcCC------------CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 528 ALQSLPGKVGSQDVNDVLTAIDHVIDMGL------------ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 528 ~~~~~~~~~~~~~~~d~~~~i~~l~~~~~------------~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
+ .....+| ++.++.+... .|.++++|+|+||||++++.++.++|++|+++++++|..
T Consensus 125 ~--------~~~~~~~---l~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~~~v~~sg~~ 193 (297)
T 1gkl_A 125 F--------YQEFRQN---VIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDY 193 (297)
T ss_dssp H--------HHHHHHT---HHHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCC
T ss_pred H--------HHHHHHH---HHHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhheeeEecccc
Confidence 1 1111233 3444444422 256789999999999999999999999999999999965
Q ss_pred hhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHH
Q 005093 596 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 675 (715)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~ 675 (715)
.+... +. ........+.. ...+.....++++.+|+.|..+ .++.++.++|+
T Consensus 194 ~~~~~---------------~~---------~~~~~~~~~~~---~~~~~~~~~~l~~~~G~~D~~~--~~~~~l~~~L~ 244 (297)
T 1gkl_A 194 WYGNS---------------PQ---------DKANSIAEAIN---RSGLSKREYFVFAATGSEDIAY--ANMNPQIEAMK 244 (297)
T ss_dssp CBSSS---------------HH---------HHHHHHHHHHH---HHTCCTTSCEEEEEEETTCTTH--HHHHHHHHHHH
T ss_pred ccCCc---------------cc---------hhhhHHHHHHh---hccCCcCcEEEEEEeCCCcccc--hhHHHHHHHHH
Confidence 31100 00 00001111111 0112223456777899999764 57889999999
Q ss_pred HcC----------CcEEEEEeCCCCccC
Q 005093 676 EKG----------VETKVIVFPNDVHGI 693 (715)
Q Consensus 676 ~~g----------~~~~~~~~~~~~H~~ 693 (715)
++| .++++.++++++|.+
T Consensus 245 ~~g~~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 245 ALPHFDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp TSTTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred HcCCccccccccCCceEEEECCCCCcCH
Confidence 988 589999999999975
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=175.12 Aligned_cols=233 Identities=13% Similarity=0.121 Sum_probs=142.3
Q ss_pred CCCcEEEEEcCCCCCCCC----------c-cchHHH---HHHHhCCcEEEEEcCCCCCC--------CchhhhhcCCC--
Q 005093 479 SCDPLIVVLHGGPHSVSL----------S-SYSKSL---AFLSSVGYSLLIVNYRGSLG--------FGEEALQSLPG-- 534 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~----------~-~~~~~~---~~la~~G~~vi~~d~rG~~~--------~g~~~~~~~~~-- 534 (715)
.+.|+||++||.+.+... . .|...+ ..|+++||.|+++|+||.|. +|.+.......
T Consensus 40 ~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~G~S~G~~~g~~g~~~~~p~~~~~ 119 (377)
T 3i1i_A 40 ERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTDNLCNVQVKNPHVITTGPKSINPKTGDE 119 (377)
T ss_dssp TCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSCTTSTTCCCCSTTSBCTTTSSB
T ss_pred CCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEecccccccccCCCcccCCCCCCCCCCCCc
Confidence 456899999996655322 0 144444 56778999999999997431 11111000000
Q ss_pred ---CCCccchhhHHHHHHHHHHcCCCCCceEE-EEEeChhHHHHHHHHhhCCCceeEEEe-cCCcchhhh----------
Q 005093 535 ---KVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAA-RNPLCNLAL---------- 599 (715)
Q Consensus 535 ---~~~~~~~~d~~~~i~~l~~~~~~d~~~i~-l~G~S~GG~~a~~~a~~~p~~~~~~v~-~~~~~~~~~---------- 599 (715)
.+....++++.+.+..+++. .+.+++. |+||||||.+++.+|.++|++++++|+ +++......
T Consensus 120 ~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~ilvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 197 (377)
T 3i1i_A 120 YAMDFPVFTFLDVARMQCELIKD--MGIARLHAVMGPSAGGMIAQQWAVHYPHMVERMIGVITNPQNPIITSVNVAQNAI 197 (377)
T ss_dssp CGGGSCCCCHHHHHHHHHHHHHH--TTCCCBSEEEEETHHHHHHHHHHHHCTTTBSEEEEESCCSBCCHHHHHHTTHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHH--cCCCcEeeEEeeCHhHHHHHHHHHHChHHHHHhcccCcCCCcCCchhhHHHHHHH
Confidence 01133567888777777766 3456786 999999999999999999999999999 665443100
Q ss_pred --hccCC-----C----CC-----------------CceeeeccCCCCCCC-----C-----------------CCCCCh
Q 005093 600 --MVGTT-----D----IP-----------------DWCYVESYGSKGKDS-----F-----------------TESPSV 629 (715)
Q Consensus 600 --~~~~~-----~----~~-----------------~~~~~~~~~~~~~~~-----~-----------------~~~~~~ 629 (715)
..... . .+ ...+...+....... + ......
T Consensus 198 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (377)
T 3i1i_A 198 EAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRNSIEVEPYEKVSSLTSFEKEINKLTYRSIELVDA 277 (377)
T ss_dssp HHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCCSSCCGGGTCTTCCCHHHHHHHHHHHHTTTTCCH
T ss_pred HHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhhhccccccccccchhHHHHHHHHHHhhhhcccCH
Confidence 00000 0 00 000000000000000 0 000000
Q ss_pred hh----HHHHHhcCc-------hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC-CCccCCCCC
Q 005093 630 ED----LTRFHSKSP-------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVHGIERPQ 697 (715)
Q Consensus 630 ~~----~~~~~~~sp-------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~ 697 (715)
.. ...+...++ ...+.++++|+|+++|++|.++|++.+..+++.+++.+..++++++++ +||....++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~gH~~~~e~ 357 (377)
T 3i1i_A 278 NSWMYTAKAVLLHDIAHGFSSLEEALSNVEANVLMIPCKQDLLQPSRYNYKMVDLLQKQGKYAEVYEIESINGHMAGVFD 357 (377)
T ss_dssp HHHHHHHHHHHHCBTTTTSSCHHHHHHTCCSEEEEECBTTCSSSCTHHHHHHHHHHHHTTCCEEECCBCCTTGGGHHHHC
T ss_pred HHHHHHHHHHhhcccccccCCHHHHHhhCCCCEEEEecCCccccCHHHHHHHHHHHHhcCCCceEEEcCCCCCCcchhcC
Confidence 00 000011111 335678899999999999999999999999999988777899999998 999765443
Q ss_pred chHHHHHHHHHHHHHhc
Q 005093 698 SDFESFLNIGLWFKKYC 714 (715)
Q Consensus 698 ~~~~~~~~i~~wl~~~l 714 (715)
. .++.+.|.+||++++
T Consensus 358 p-~~~~~~i~~fl~~~~ 373 (377)
T 3i1i_A 358 I-HLFEKKVYEFLNRKV 373 (377)
T ss_dssp G-GGTHHHHHHHHHSCC
T ss_pred H-HHHHHHHHHHHHhhh
Confidence 3 468889999998765
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=168.09 Aligned_cols=214 Identities=17% Similarity=0.138 Sum_probs=135.3
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
.+|..++...+.| ++.|+||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... ......
T Consensus 11 ~~g~~l~~~~~g~------~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G---~G~s~~~---~~~~~~ 76 (286)
T 3qit_A 11 FGGNQICLCSWGS------PEHPVVLCIHGILEQ--GLAWQEVALPLAAQGYRVVAPDLFG---HGRSSHL---EMVTSY 76 (286)
T ss_dssp ETTEEEEEEEESC------TTSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC---SSGGGC
T ss_pred cCCceEEEeecCC------CCCCEEEEECCCCcc--cchHHHHHHHhhhcCeEEEEECCCC---CCCCCCC---CCCCCc
Confidence 3678888777644 246889999997655 5578888999999999999999999 4444211 111233
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc---------------cCC
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---------------GTT 604 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~---------------~~~ 604 (715)
..++..+.+..+++.. +.++++++|||+||.+++.++.++|++++++|+++|........ ...
T Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (286)
T 3qit_A 77 SSLTFLAQIDRVIQEL--PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQLTTCLDYLSST 154 (286)
T ss_dssp SHHHHHHHHHHHHHHS--CSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCC---CCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhc--CCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCccccchhhhHHHHHHHHHHhcc
Confidence 4667777666666653 45789999999999999999999999999999999875422110 000
Q ss_pred CC-CCceeeeccCCCCCCCCCCCCChhhHHHH---------------------------------HhcCchhhccCCCCc
Q 005093 605 DI-PDWCYVESYGSKGKDSFTESPSVEDLTRF---------------------------------HSKSPISHISKVKTP 650 (715)
Q Consensus 605 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~sp~~~~~~i~~P 650 (715)
.. ..+........ ................+ ...+....+.++++|
T Consensus 155 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P 233 (286)
T 3qit_A 155 PQHPIFPDVATAAS-RLRQAIPSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPGGRSQYLEMLKSIQVP 233 (286)
T ss_dssp CCCCCBSSHHHHHH-HHHHHSTTSCHHHHHHHHHHTEEEETTEEEECSCGGGGGHHHHTTTSCTTHHHHHHHHHHHCCSC
T ss_pred ccccccccHHHHHH-HhhcCCcccCHHHHHHHhhccccccccceeeeechhhhccccccccccccchhHHHHHHhccCCC
Confidence 00 00000000000 00000000000000000 111222345678999
Q ss_pred EEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCC
Q 005093 651 TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 695 (715)
Q Consensus 651 ~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 695 (715)
+|+++|++|..+|.+....+.+.+. .++++++++ ||....
T Consensus 234 ~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~g-gH~~~~ 273 (286)
T 3qit_A 234 TTLVYGDSSKLNRPEDLQQQKMTMT----QAKRVFLSG-GHNLHI 273 (286)
T ss_dssp EEEEEETTCCSSCHHHHHHHHHHST----TSEEEEESS-SSCHHH
T ss_pred eEEEEeCCCcccCHHHHHHHHHHCC----CCeEEEeeC-CchHhh
Confidence 9999999999999888777666553 468999999 997653
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-18 Score=176.77 Aligned_cols=192 Identities=18% Similarity=0.140 Sum_probs=131.9
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhh------hcCCCCC-------C------
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL------QSLPGKV-------G------ 537 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~------~~~~~~~-------~------ 537 (715)
..+++|+||++||++.. ...|...++.|+++||.|+++|+||.+....... ......+ +
T Consensus 94 ~~~~~P~Vv~~HG~~~~--~~~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 171 (383)
T 3d59_A 94 PGEKYPLVVFSHGLGAF--RTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTLKQEEETHI 171 (383)
T ss_dssp CSSCEEEEEEECCTTCC--TTTTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred cCCCCCEEEEcCCCCCC--chHHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCceeeeccccCcccchhh
Confidence 34588999999997655 3467788999999999999999998543211000 0000000 0
Q ss_pred -----ccchhhHHHHHHHHHH--------------------cCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecC
Q 005093 538 -----SQDVNDVLTAIDHVID--------------------MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 592 (715)
Q Consensus 538 -----~~~~~d~~~~i~~l~~--------------------~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 592 (715)
....+|+..+++++.+ ...+|.++|+++|||+||.+++.++.+.+ +++++|+++
T Consensus 172 ~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~-~v~a~v~~~ 250 (383)
T 3d59_A 172 RNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQ-RFRCGIALD 250 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEES
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHHhhCC-CccEEEEeC
Confidence 0114688888888876 34467889999999999999999988754 699999988
Q ss_pred CcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHH
Q 005093 593 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 672 (715)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~ 672 (715)
|... +... ..+.++++|+|++||++|..+ .. .+..+
T Consensus 251 ~~~~------------------------------p~~~-----------~~~~~i~~P~Lii~g~~D~~~--~~-~~~~~ 286 (383)
T 3d59_A 251 AWMF------------------------------PLGD-----------EVYSRIPQPLFFINSEYFQYP--AN-IIKMK 286 (383)
T ss_dssp CCCT------------------------------TCCG-----------GGGGSCCSCEEEEEETTTCCH--HH-HHHHH
T ss_pred CccC------------------------------CCch-----------hhhccCCCCEEEEecccccch--hh-HHHHH
Confidence 7421 0000 122567899999999999754 22 23335
Q ss_pred HHHHcCCcEEEEEeCCCCccCCC------------------CCch----HHHHHHHHHHHHHhcC
Q 005093 673 ALREKGVETKVIVFPNDVHGIER------------------PQSD----FESFLNIGLWFKKYCK 715 (715)
Q Consensus 673 ~l~~~g~~~~~~~~~~~~H~~~~------------------~~~~----~~~~~~i~~wl~~~l~ 715 (715)
++.+.+.+.+++++++++|.+.. .... ..+.+.+++||+++|+
T Consensus 287 ~l~~~~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~ 351 (383)
T 3d59_A 287 KCYSPDKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLG 351 (383)
T ss_dssp TTCCTTSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcC
Confidence 56566788999999999998631 1112 2233469999999874
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-16 Score=177.45 Aligned_cols=263 Identities=11% Similarity=0.075 Sum_probs=174.9
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
.+...+|||| ++++|..+ ..++..+ .+++..+++...... ..++|||||++|+|+.
T Consensus 83 ~v~~~~~spd-~~~~~~~~-----~~i~~~d~~~~~~~~l~~~~~~~----------~~~~~SpdG~~la~~~------- 139 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFTQ-----GGLVGFDMLARKVTYLFDTNEET----------ASLDFSPVGDRVAYVR------- 139 (706)
T ss_dssp CCEEEEETTT-TEEEEEET-----TEEEEEETTTTEEEEEECCTTCC----------TTCEECTTSSEEEEEE-------
T ss_pred CceeEEECCC-CeEEEEEC-----CEEEEEECCCCceEEccCCcccc----------cCCcCCCCCCEEEEEE-------
Confidence 4788999999 88888855 2566665 566666665543333 7899999999999952
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC-----CceEeecCCCCCCc------------
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-----GEVQAVKGIPKSLS------------ 185 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----g~~~~l~~~~~~~~------------ 185 (715)
..+|++||+++ ++.++++ .....
T Consensus 140 --------------------------------------~~~i~v~~~~~~~~~~g~~~~~~--~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 140 --------------------------------------NHNLYIARGGKLGEGMSRAIAVT--IDGTETLVYGQAVHQRE 179 (706)
T ss_dssp --------------------------------------TTEEEEEECBCTTSCCCCCEESC--SCCBTTEEESSCCGGGC
T ss_pred --------------------------------------CCeEEEEecCcccccCCCcEEec--cCCCCCeEcccchhhhh
Confidence 15699999999 8888773 32222
Q ss_pred ---cceEEEecCCCCCccEEEEEeecCcccee--------------eeee----eecCCceEEEEecccccchhhhhhhh
Q 005093 186 ---VGQVVWAPLNEGLHQYLVFVGWSSETRKL--------------GIKY----CYNRPCALYAVRVSLYKSEASELELK 244 (715)
Q Consensus 186 ---~~~~~~spdg~~~~~~i~~~~~~~~~~~~--------------g~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (715)
...+.|||||+. |+|.+........ ...+ ..+....|+++|+
T Consensus 180 ~~~~~~~~~SpDg~~----la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~------------- 242 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSC----LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL------------- 242 (706)
T ss_dssp TTCCCSEEECTTSSE----EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET-------------
T ss_pred cCCCceEEECCCCCE----EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC-------------
Confidence 368999999999 9998632110000 0000 0012357999997
Q ss_pred ccCCCCCCceecCCC---CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCC-CCCCcccceeeeeecee
Q 005093 245 ESSSEDLPVVNLTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 245 ~~~~~~~~~~~lt~~---~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~~ 320 (715)
++++.+.++.. ...+..+.|||||++|++.+.... .....|+++|+.++ ..+.+....
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~------~~~~~v~~~d~~~g~~~~~~~~~~-------- 304 (706)
T 2z3z_A 243 ----ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA------QNECKVNAYDAETGRFVRTLFVET-------- 304 (706)
T ss_dssp ----TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT------SCEEEEEEEETTTCCEEEEEEEEE--------
T ss_pred ----CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC------CCeeEEEEEECCCCceeeEEEEcc--------
Confidence 77776666532 345778999999999999876532 23457999998886 322221110
Q ss_pred cCCCCCccccccCCCCCCcccc--CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCcee-EEEeecCCEEEEEEeC
Q 005093 321 CAEGDCFPGLYSSSILSNPWLS--DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSW-SLLTLDGDNIIAVSSS 397 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~--dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~-~~~s~~~~~l~~~~~~ 397 (715)
.. .|......+.|+| ||+ +++++..++..+||.++..++..+.++.....+.. ..|+++++.|++....
T Consensus 305 --~~-----~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 305 --DK-----HYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp --CS-----SCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred --CC-----CeECccCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 00 0111234678999 998 55666666778999999877888888776543332 5789999999887755
Q ss_pred CCC-CCeEEEEeeccc
Q 005093 398 PVD-VPQVKYGYFVDK 412 (715)
Q Consensus 398 ~~~-p~~l~~~~~~~~ 412 (715)
... -..|+..++.++
T Consensus 377 ~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 377 ASPLERHFYCIDIKGG 392 (706)
T ss_dssp SCTTCBEEEEEETTCC
T ss_pred CCCceEEEEEEEcCCC
Confidence 321 247888887554
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=165.76 Aligned_cols=232 Identities=16% Similarity=0.164 Sum_probs=137.4
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCC-CCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~-~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
.+|..++....-+ ...|+||++||.+ .......|...+..|++. |.|+++|+|| +|.+.... . ..
T Consensus 14 ~~g~~l~y~~~g~------~g~p~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~~---~-~~ 79 (285)
T 1c4x_A 14 SGTLASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIG---FGQSEYPE---T-YP 79 (285)
T ss_dssp CTTSCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGGGHHHHHTT-SEEEEECCTT---STTSCCCS---S-CC
T ss_pred ECCEEEEEEecCC------CCCCEEEEEeCCCCCCcchhhHHHHHHHHhhC-cEEEEecCCC---CCCCCCCC---C-cc
Confidence 3566776433211 2346799999954 222244666677778665 9999999999 55543211 1 02
Q ss_pred cchhhH----HHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh--------hccCCCC
Q 005093 539 QDVNDV----LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--------MVGTTDI 606 (715)
Q Consensus 539 ~~~~d~----~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~--------~~~~~~~ 606 (715)
..++++ .+.+..+++. .+.+++.|+||||||.+++.+|.++|++++++|+++|...... .......
T Consensus 80 ~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 157 (285)
T 1c4x_A 80 GHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYAD 157 (285)
T ss_dssp SSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGS
T ss_pred cchhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHHhcc
Confidence 235555 5545444443 2347899999999999999999999999999999987542100 0000000
Q ss_pred CCceeeeccCCCCCCCCCCC--C------------ChhhHHHHHh------------cCchhhccCCCCcEEEEeeCCCC
Q 005093 607 PDWCYVESYGSKGKDSFTES--P------------SVEDLTRFHS------------KSPISHISKVKTPTIFLLGAQDL 660 (715)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~------------~sp~~~~~~i~~P~Lii~G~~D~ 660 (715)
+.......+........... . .......+.. ......+.++++|+|+++|++|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~ 237 (285)
T 1c4x_A 158 PRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDR 237 (285)
T ss_dssp CCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEETTCS
T ss_pred ccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccCCCCEEEEEeCCCe
Confidence 00000000000000000000 0 0000000000 01223567889999999999999
Q ss_pred cCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 661 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 661 ~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
.+|++.+..+++.+. ..++++++++||....+. ..++.+.+.+||++
T Consensus 238 ~~p~~~~~~~~~~~~----~~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 238 IVPLDTSLYLTKHLK----HAELVVLDRCGHWAQLER-WDAMGPMLMEHFRA 284 (285)
T ss_dssp SSCTHHHHHHHHHCS----SEEEEEESSCCSCHHHHS-HHHHHHHHHHHHHC
T ss_pred eeCHHHHHHHHHhCC----CceEEEeCCCCcchhhcC-HHHHHHHHHHHHhc
Confidence 999988877766553 478999999999765443 45788889999864
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=176.20 Aligned_cols=140 Identities=11% Similarity=0.014 Sum_probs=102.5
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC------------Cccch----HHHHHHHhCCcEEEEEcCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS------------LSSYS----KSLAFLSSVGYSLLIVNYR 519 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~------------~~~~~----~~~~~la~~G~~vi~~d~r 519 (715)
.+...+|.++.++++.|++. .++.|+||++||++.... ...|. ..++.|+++||+|+++|+|
T Consensus 96 ~~~~~~g~~l~~~l~~P~~~--~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~Gy~Vl~~D~r 173 (398)
T 3nuz_A 96 EFYPLPKCVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEGYIAVAVDNP 173 (398)
T ss_dssp EECCSTTBCEEEEEEEESSC--CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTTCEEEEECCT
T ss_pred EEEcCCCcEEEEEEEeCCCC--CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCCCEEEEecCC
Confidence 55667899999999999842 568999999999755321 00111 4778999999999999999
Q ss_pred CCCCCchhhhhc----------------CCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC
Q 005093 520 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 583 (715)
Q Consensus 520 G~~~~g~~~~~~----------------~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 583 (715)
|.++.+...... ....+....+.|+.+++++|.+++.+|.+||+|+||||||++++.+++. ++
T Consensus 174 G~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a~~~aa~-~~ 252 (398)
T 3nuz_A 174 AAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTL-DT 252 (398)
T ss_dssp TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHHHHHHHH-CT
T ss_pred CCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHHHHHHhc-CC
Confidence 955433221100 1111122234799999999999988999999999999999999988886 45
Q ss_pred ceeEEEecCCcchhh
Q 005093 584 KFVAAAARNPLCNLA 598 (715)
Q Consensus 584 ~~~~~v~~~~~~~~~ 598 (715)
+++++|+.+++..+.
T Consensus 253 ~i~a~v~~~~~~~~~ 267 (398)
T 3nuz_A 253 SIYAFVYNDFLCQTQ 267 (398)
T ss_dssp TCCEEEEESCBCCHH
T ss_pred cEEEEEEecccccch
Confidence 788988877665543
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.5e-18 Score=169.63 Aligned_cols=215 Identities=16% Similarity=0.218 Sum_probs=132.0
Q ss_pred CcEEEEEcCCCCC-CCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 481 DPLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 481 ~P~vv~iHGg~~~-~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
.|.||++||.+.. .....|...+..| +++|.|+++|+|| +|.+... .. ....+++..+.+..+++.- ..
T Consensus 25 g~~vvllHG~~~~~~~~~~w~~~~~~L-~~~~~vi~~Dl~G---~G~S~~~---~~-~~~~~~~~a~dl~~~l~~l--~~ 94 (282)
T 1iup_A 25 GQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVG---FGFTDRP---EN-YNYSKDSWVDHIIGIMDAL--EI 94 (282)
T ss_dssp SSEEEEECCCCTTCCHHHHHTTTHHHH-TTTSEEEEECCTT---STTSCCC---TT-CCCCHHHHHHHHHHHHHHT--TC
T ss_pred CCeEEEECCCCCCccHHHHHHHHHHhh-ccCCEEEEECCCC---CCCCCCC---CC-CCCCHHHHHHHHHHHHHHh--CC
Confidence 4679999995432 2223566666677 6789999999999 6655321 11 1234566666555555542 34
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh-------hhccCCCCCCceee----eccC-CCC------CC
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------LMVGTTDIPDWCYV----ESYG-SKG------KD 621 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~-~~~------~~ 621 (715)
+++.|+||||||.+++.+|.++|++++++|+++|..... ..... .+..... ..+. ... ..
T Consensus 95 ~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (282)
T 1iup_A 95 EKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGY--TPSIENMRNLLDIFAYDRSLVTDELAR 172 (282)
T ss_dssp CSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTC--CSCHHHHHHHHHHHCSSGGGCCHHHHH
T ss_pred CceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcC--CCcHHHHHHHHHHhhcCcccCCHHHHH
Confidence 789999999999999999999999999999998754210 00000 0000000 0000 000 00
Q ss_pred -CC--CCCCCh-hhHHHHH----------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeC
Q 005093 622 -SF--TESPSV-EDLTRFH----------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 687 (715)
Q Consensus 622 -~~--~~~~~~-~~~~~~~----------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (715)
.+ ...+.. .....+. ...+...+.++++|+|+++|++|..+|++.+..+.+.+. ..++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~~~~~~~~~----~~~~~~i~ 248 (282)
T 1iup_A 173 LRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELID----RAQLHVFG 248 (282)
T ss_dssp HHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHCT----TEEEEEES
T ss_pred HHHhhccChHHHHHHHHHHhccccccccccccchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHhCC----CCeEEEEC
Confidence 00 000000 0000000 000114567889999999999999999888777766553 47899999
Q ss_pred CCCccCCCCCchHHHHHHHHHHHHH
Q 005093 688 NDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 688 ~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
++||....+. ..++.+.+.+|+++
T Consensus 249 ~~gH~~~~e~-p~~~~~~i~~fl~~ 272 (282)
T 1iup_A 249 RCGHWTQIEQ-TDRFNRLVVEFFNE 272 (282)
T ss_dssp SCCSCHHHHS-HHHHHHHHHHHHHT
T ss_pred CCCCCccccC-HHHHHHHHHHHHhc
Confidence 9999765433 45788899999975
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=166.21 Aligned_cols=232 Identities=17% Similarity=0.163 Sum_probs=134.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..++...+-+ +.+.|.||++||++... ..|...+..++++||.|+++|+|| +|.+.... .....
T Consensus 13 ~g~~l~~~~~g~-----~~~~~~vvllHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~----~~~~~ 78 (293)
T 1mtz_A 13 NGIYIYYKLCKA-----PEEKAKLMTMHGGPGMS--HDYLLSLRDMTKEGITVLFYDQFG---CGRSEEPD----QSKFT 78 (293)
T ss_dssp TTEEEEEEEECC-----SSCSEEEEEECCTTTCC--SGGGGGGGGGGGGTEEEEEECCTT---STTSCCCC----GGGCS
T ss_pred CCEEEEEEEECC-----CCCCCeEEEEeCCCCcc--hhHHHHHHHHHhcCcEEEEecCCC---CccCCCCC----CCccc
Confidence 456665444321 12237799999965442 223333445568899999999999 55543211 11123
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC-----CCCCCc------
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----TDIPDW------ 609 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~-----~~~~~~------ 609 (715)
++++.+.+..+++.- .+.+++.|+||||||.+++.+|.++|++++++|+++|.......... ...+..
T Consensus 79 ~~~~~~dl~~~~~~l-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (293)
T 1mtz_A 79 IDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYRDAIK 157 (293)
T ss_dssp HHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHHHHHHHhcCHHHHHHHH
Confidence 444444444444431 02368999999999999999999999999999999987643211000 000000
Q ss_pred -----------eee---eccCCCCCCCCCCCCChhhHHH---------HH---------------hcCchhhccCCCCcE
Q 005093 610 -----------CYV---ESYGSKGKDSFTESPSVEDLTR---------FH---------------SKSPISHISKVKTPT 651 (715)
Q Consensus 610 -----------~~~---~~~~~~~~~~~~~~~~~~~~~~---------~~---------------~~sp~~~~~~i~~P~ 651 (715)
.+. ..+...........+ ...... +. ..+....+.++++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 236 (293)
T 1mtz_A 158 KYGSSGSYENPEYQEAVNYFYHQHLLRSEDWP-PEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPT 236 (293)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCC-HHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGCCSCE
T ss_pred HhhccCCcChHHHHHHHHHHHHhhcccccCch-HHHHHhHhhhccchhhhhccCcceecccccccCCChhhhhccCCCCE
Confidence 000 000000000000001 000000 00 111223456788999
Q ss_pred EEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 652 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
|+++|++| .+++..+..+.+.+ ..+++++++++||....+ ...++.+.+.+||+++|
T Consensus 237 lii~G~~D-~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~~~l 293 (293)
T 1mtz_A 237 LITVGEYD-EVTPNVARVIHEKI----AGSELHVFRDCSHLTMWE-DREGYNKLLSDFILKHL 293 (293)
T ss_dssp EEEEETTC-SSCHHHHHHHHHHS----TTCEEEEETTCCSCHHHH-SHHHHHHHHHHHHHTCC
T ss_pred EEEeeCCC-CCCHHHHHHHHHhC----CCceEEEeCCCCCCcccc-CHHHHHHHHHHHHHhcC
Confidence 99999999 67766666665554 347899999999986544 35578899999998764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-17 Score=185.81 Aligned_cols=312 Identities=10% Similarity=0.002 Sum_probs=184.1
Q ss_pred eEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC-----
Q 005093 46 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS----- 119 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~----- 119 (715)
..++|||||+ +++.... ..++..+ .+|+.++++........ .+..++|||||++|+|.+....
T Consensus 19 ~~~~~s~dg~-~~~~~~d----~~i~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~SpDg~~la~~~~~~~~~~~s 87 (719)
T 1z68_A 19 FFPNWISGQE-YLHQSAD----NNIVLYNIETGQSYTILSNRTMKSV------NASNYGLSPDRQFVYLESDYSKLWRYS 87 (719)
T ss_dssp CCCEESSSSE-EEEECTT----SCEEEEESSSCCEEEEECHHHHHTT------TCSEEEECTTSSEEEEEEEEEECSSSC
T ss_pred CccEECCCCe-EEEEcCC----CCEEEEEcCCCcEEEEEcccccccc------ceeeEEECCCCCeEEEEecCceeEEee
Confidence 4679999994 5454332 2566655 67777777654221000 1268999999999999876321
Q ss_pred --CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCC-------------
Q 005093 120 --PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------------- 184 (715)
Q Consensus 120 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~------------- 184 (715)
.....+........ .............|.|| |..++......|++|++++|+.++++ ..+..
T Consensus 88 ~~~~i~~~d~~~g~~~-~~~~l~~~~~~~~~SPD-G~~la~~~~~~i~~~~~~~g~~~~l~-~~~~~~~v~~g~~~~v~~ 164 (719)
T 1z68_A 88 YTATYYIYDLSNGEFV-RGNELPRPIQYLCWSPV-GSKLAYVYQNNIYLKQRPGDPPFQIT-FNGRENKIFNGIPDWVYE 164 (719)
T ss_dssp EEEEEEEEETTTTEEC-CSSCCCSSBCCEEECSS-TTCEEEEETTEEEEESSTTSCCEECC-CCCBTTTEEESSCCHHHH
T ss_pred cceEEEEEECCCCccc-cceecCcccccceECCC-CCEEEEEECCeEEEEeCCCCCcEEEe-cCCCcCCeEcccccceee
Confidence 11111111111110 00111123446778888 67776667789999999999988884 12211
Q ss_pred -----ccceEEEecCCCCCccEEEEEeecCcccee-------------eeee------eecCCceEEEEecccccchhhh
Q 005093 185 -----SVGQVVWAPLNEGLHQYLVFVGWSSETRKL-------------GIKY------CYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 185 -----~~~~~~~spdg~~~~~~i~~~~~~~~~~~~-------------g~~~------~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
....++|||||+. |+|.+......+. .... ..+....|+++|+
T Consensus 165 ee~~~~~~~~~wSPDG~~----la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~--------- 231 (719)
T 1z68_A 165 EEMLATKYALWWSPNGKF----LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT--------- 231 (719)
T ss_dssp HHTTCSSCCEEECTTSSE----EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES---------
T ss_pred eecccCcccEEECCCCCE----EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC---------
Confidence 1147999999999 9998753221000 0000 0012237889997
Q ss_pred hhhhccCCCCCCce---ec------CCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeee----cCCCCCCC
Q 005093 241 LELKESSSEDLPVV---NL------TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID----WPTNGNFS 307 (715)
Q Consensus 241 ~~~~~~~~~~~~~~---~l------t~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~----~~~~~~~~ 307 (715)
++++.. .+ ......+..++|||||+ +++...... ....+|+++| +.+++.+.
T Consensus 232 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~------~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 232 --------TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRV------QNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp --------SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESS------TTEEEEEEEEECSSSSSEECCG
T ss_pred --------CCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccc------cCeEEEEEEcccCCCCCCceEE
Confidence 555432 33 23455678899999976 555533221 2235799999 77766555
Q ss_pred cccceeeeeeceecCCCCCccccccC--CCCCCccccCCCEEEEE-eeeCCeeEEEEEECCCCcEEEecCCCCCceeEEE
Q 005093 308 SLEKIVDVIPVVQCAEGDCFPGLYSS--SILSNPWLSDGCTMLLS-SIWGSSQVIISVNVSSGELLRITPAESNFSWSLL 384 (715)
Q Consensus 308 lt~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~dg~~l~~~-~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~ 384 (715)
++.... ...+. |.. ....+.|+|||+.+++. +...+..+||.+|+.+++.++++.....+....+
T Consensus 297 ~~~~~~-------~~~~~-----~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~ 364 (719)
T 1z68_A 297 TQEHIE-------ESRTG-----WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFR 364 (719)
T ss_dssp GGEEEE-------ECSSS-----CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEE
T ss_pred EEeccc-------ccCCc-----eEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEE
Confidence 442000 00000 100 01267899999988774 4456778999999999998888876544444455
Q ss_pred eecCCEEEEEEeC---CCCCCeEEEEeeccc
Q 005093 385 TLDGDNIIAVSSS---PVDVPQVKYGYFVDK 412 (715)
Q Consensus 385 s~~~~~l~~~~~~---~~~p~~l~~~~~~~~ 412 (715)
+ +++.|++++.. ......||.+++.++
T Consensus 365 ~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 365 V-TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp E-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred E-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 6 88899888754 123456787776433
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-17 Score=164.45 Aligned_cols=216 Identities=15% Similarity=0.187 Sum_probs=136.7
Q ss_pred CCcEEEEEcCCCCCCCCccch-HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~-~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
+.|.||++||.+.. ...|. ..+..|+++||.|+++|+|| +|.+.. + .....++..+.+..+++. ++
T Consensus 42 ~~~~vv~lHG~~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G---~G~s~~---~---~~~~~~~~~~~~~~~l~~--l~ 108 (293)
T 3hss_A 42 TGDPVVFIAGRGGA--GRTWHPHQVPAFLAAGYRCITFDNRG---IGATEN---A---EGFTTQTMVADTAALIET--LD 108 (293)
T ss_dssp SSEEEEEECCTTCC--GGGGTTTTHHHHHHTTEEEEEECCTT---SGGGTT---C---CSCCHHHHHHHHHHHHHH--HT
T ss_pred CCCEEEEECCCCCc--hhhcchhhhhhHhhcCCeEEEEccCC---CCCCCC---c---ccCCHHHHHHHHHHHHHh--cC
Confidence 56889999996655 44566 56788889999999999999 565431 1 122455555555555544 24
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc------------CCCCCC-cee----eeccCCCCC-
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG------------TTDIPD-WCY----VESYGSKGK- 620 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~------------~~~~~~-~~~----~~~~~~~~~- 620 (715)
.+++.|+|||+||.+++.+|.++|++++++|+++|......... ...... +.. ...+.....
T Consensus 109 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (293)
T 3hss_A 109 IAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTLN 188 (293)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHHT
T ss_pred CCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhccccccc
Confidence 57899999999999999999999999999999998653211100 000000 000 000000000
Q ss_pred ------------CCCCCCCChhhHHH---HHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEE
Q 005093 621 ------------DSFTESPSVEDLTR---FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 685 (715)
Q Consensus 621 ------------~~~~~~~~~~~~~~---~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (715)
.............. ....+....+.++++|+|+++|++|..+|++.+..+.+.+. .+++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~----~~~~~~ 264 (293)
T 3hss_A 189 DDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADALP----NGRYLQ 264 (293)
T ss_dssp CHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHST----TEEEEE
T ss_pred ccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHHCC----CceEEE
Confidence 00000000000000 01122334567889999999999999999888777776663 478999
Q ss_pred eCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 686 FPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 686 ~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
++++||..... ...++.+.|.+||++.
T Consensus 265 ~~~~gH~~~~~-~p~~~~~~i~~fl~~~ 291 (293)
T 3hss_A 265 IPDAGHLGFFE-RPEAVNTAMLKFFASV 291 (293)
T ss_dssp ETTCCTTHHHH-SHHHHHHHHHHHHHTC
T ss_pred eCCCcchHhhh-CHHHHHHHHHHHHHhc
Confidence 99999986543 3457888899999763
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=166.87 Aligned_cols=213 Identities=17% Similarity=0.228 Sum_probs=130.0
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCce
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 561 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~ 561 (715)
|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+.... .....++..+.+..+++. ++.++
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~~~-----~~~~~~~~~~dl~~~l~~--l~~~~ 91 (279)
T 1hkh_A 24 QPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRG---FGGSSKVN-----TGYDYDTFAADLHTVLET--LDLRD 91 (279)
T ss_dssp EEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTT---STTSCCCS-----SCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CcEEEEcCCCch--hhHHhhhHHHHHhCCcEEEEeCCCC---CCCCCCCC-----CCCCHHHHHHHHHHHHHh--cCCCc
Confidence 459999996654 5678888999999999999999999 55543211 122344444444444443 23578
Q ss_pred EEEEEeChhHHHHHHHHhhCCC-ceeEEEecCCcchhhhhccCCCC--CCcee--------------eeccCCCCCCC--
Q 005093 562 VTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALMVGTTDI--PDWCY--------------VESYGSKGKDS-- 622 (715)
Q Consensus 562 i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~~~~~~~~~~~~~--~~~~~--------------~~~~~~~~~~~-- 622 (715)
+.|+||||||.+++.+|.++|+ +++++|++++............. ..... ...+.......
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (279)
T 1hkh_A 92 VVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDE 171 (279)
T ss_dssp EEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHH
T ss_pred eEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcCCcCCCcHHHHHHHHHHhhhhhhhhHHHHHhhhhhccc
Confidence 9999999999999999999998 99999999874321100000000 00000 00000000000
Q ss_pred -CCCCCChhhHHHHH------------------hcCchhhccCC---CCcEEEEeeCCCCcCCchHH-HHHHHHHHHcCC
Q 005093 623 -FTESPSVEDLTRFH------------------SKSPISHISKV---KTPTIFLLGAQDLRVPVSNG-LQYARALREKGV 679 (715)
Q Consensus 623 -~~~~~~~~~~~~~~------------------~~sp~~~~~~i---~~P~Lii~G~~D~~v~~~~~-~~~~~~l~~~g~ 679 (715)
............+. ..+....+.++ ++|+|+++|++|..+|++.+ ..+.+.+ .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~----~ 247 (279)
T 1hkh_A 172 NLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAV----P 247 (279)
T ss_dssp HBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHHC----T
T ss_pred CCcccccHHHHHhhhhhhccCcHHHHHHHHHHHhhchhhhHHHhccCCCCEEEEEcCCCccCChHHHHHHHHHhC----C
Confidence 00000000000000 11122245567 89999999999999998876 5555544 3
Q ss_pred cEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 680 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 680 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
.+++++++++||..... ...++.+.|.+||+
T Consensus 248 ~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~ 278 (279)
T 1hkh_A 248 EADYVEVEGAPHGLLWT-HADEVNAALKTFLA 278 (279)
T ss_dssp TSEEEEETTCCTTHHHH-THHHHHHHHHHHHH
T ss_pred CeeEEEeCCCCccchhc-CHHHHHHHHHHHhh
Confidence 47899999999987543 44578888999986
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=167.54 Aligned_cols=231 Identities=17% Similarity=0.187 Sum_probs=138.6
Q ss_pred CC-ceEEEEEEecCCCCCCCCCcEEEEEcCCC-CCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 461 AQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 461 ~g-~~l~~~l~~P~~~~~~~~~P~vv~iHGg~-~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
+| ..++.... +.++.|.||++||.+ .......|...+..|++. |.|+++|+|| ||.+... .. ..
T Consensus 21 ~g~~~l~y~~~------G~g~~~~vvllHG~~pg~~~~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~---~~-~~ 86 (291)
T 2wue_A 21 DGPLKLHYHEA------GVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARH-FHVLAVDQPG---YGHSDKR---AE-HG 86 (291)
T ss_dssp SSEEEEEEEEE------CTTCSSEEEEECCCCTTCCHHHHTTTTHHHHTTT-SEEEEECCTT---STTSCCC---SC-CS
T ss_pred CCcEEEEEEec------CCCCCCcEEEECCCCCccchHHHHHHHHHHHHhc-CEEEEECCCC---CCCCCCC---CC-CC
Confidence 56 67764433 123346899999963 222244676777888665 9999999999 6655321 11 12
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC--C----------CC
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--T----------DI 606 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~--~----------~~ 606 (715)
..+++..+.+..+++. .+.+++.|+||||||.+++.+|.++|++++++|++++.......... . ..
T Consensus 87 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
T 2wue_A 87 QFNRYAAMALKGLFDQ--LGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSKFSVA 164 (291)
T ss_dssp SHHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHH--hCCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhHHHHHHhcc
Confidence 3455655555555544 23478999999999999999999999999999999875421000000 0 00
Q ss_pred CCceeeeccCCCCCCCCCCCC------------ChhhHHHHHh-----cC-----ch--hhccCCCCcEEEEeeCCCCcC
Q 005093 607 PDWCYVESYGSKGKDSFTESP------------SVEDLTRFHS-----KS-----PI--SHISKVKTPTIFLLGAQDLRV 662 (715)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-----~s-----p~--~~~~~i~~P~Lii~G~~D~~v 662 (715)
+.+.....+............ .......+.. .+ .. ..+.++++|+|+++|++|..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~ 244 (291)
T 2wue_A 165 PTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVN 244 (291)
T ss_dssp CCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGGCCSCEEEEEETTCSSS
T ss_pred CCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhhCCCCeEEEecCCCCCC
Confidence 000000000000000000000 0000000000 00 11 456788999999999999999
Q ss_pred CchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 663 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 663 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
|++.+..+.+.+. ..++++++++||....+. ...+.+.|.+||++
T Consensus 245 ~~~~~~~~~~~~p----~~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~ 289 (291)
T 2wue_A 245 PLDGALVALKTIP----RAQLHVFGQCGHWVQVEK-FDEFNKLTIEFLGG 289 (291)
T ss_dssp CGGGGHHHHHHST----TEEEEEESSCCSCHHHHT-HHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCC----CCeEEEeCCCCCChhhhC-HHHHHHHHHHHHhc
Confidence 9988877766553 478999999999765433 45778888888864
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=165.07 Aligned_cols=214 Identities=14% Similarity=0.138 Sum_probs=133.5
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
+.|+||++||++... ..|...+..|++ ||.|+++|+|| +|.+.. +........+++.+.+..+++.. +.
T Consensus 22 ~~~~vv~~HG~~~~~--~~~~~~~~~L~~-~~~vi~~d~~G---~G~s~~---~~~~~~~~~~~~~~~~~~~~~~l--~~ 90 (278)
T 3oos_A 22 EGPPLCVTHLYSEYN--DNGNTFANPFTD-HYSVYLVNLKG---CGNSDS---AKNDSEYSMTETIKDLEAIREAL--YI 90 (278)
T ss_dssp SSSEEEECCSSEECC--TTCCTTTGGGGG-TSEEEEECCTT---STTSCC---CSSGGGGSHHHHHHHHHHHHHHT--TC
T ss_pred CCCeEEEEcCCCcch--HHHHHHHHHhhc-CceEEEEcCCC---CCCCCC---CCCcccCcHHHHHHHHHHHHHHh--CC
Confidence 457899999976553 345666677777 99999999999 554431 11112234667777666666653 45
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCC-----CCcee----eeccCCC------------
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI-----PDWCY----VESYGSK------------ 618 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~------------ 618 (715)
++++++|||+||.+++.++.++|++++++|+++|............. ..... ...+...
T Consensus 91 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (278)
T 3oos_A 91 NKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNRIVSIMNALNDDSTVQEERKALSR 170 (278)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTSTTSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchhhhhhchhHHHHHHHHHhhcccccCchHHHHHHH
Confidence 68999999999999999999999999999999998762111100000 00000 0000000
Q ss_pred -----------CCCCCCCCC-----ChhhHHHHH-----hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHc
Q 005093 619 -----------GKDSFTESP-----SVEDLTRFH-----SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 677 (715)
Q Consensus 619 -----------~~~~~~~~~-----~~~~~~~~~-----~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (715)
....+...+ .......+. ..+....+.++++|+|+++|++|..+|++.+..+.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~-- 248 (278)
T 3oos_A 171 EWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHDVQCPYIFSCEIANLIP-- 248 (278)
T ss_dssp HHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHST--
T ss_pred HHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHHhCCCCCEEEEEeccCCCCCHHHHHHHHhhCC--
Confidence 000000000 001111111 223345567889999999999999999988877777663
Q ss_pred CCcEEEEEeCCCCccCCCCCchHHHHHHHHHH
Q 005093 678 GVETKVIVFPNDVHGIERPQSDFESFLNIGLW 709 (715)
Q Consensus 678 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~w 709 (715)
.+++++++++||.+... ...++.+.|.+|
T Consensus 249 --~~~~~~~~~~gH~~~~~-~p~~~~~~i~~f 277 (278)
T 3oos_A 249 --NATLTKFEESNHNPFVE-EIDKFNQFVNDT 277 (278)
T ss_dssp --TEEEEEETTCSSCHHHH-SHHHHHHHHHHT
T ss_pred --CcEEEEcCCcCCCcccc-cHHHHHHHHHhh
Confidence 47999999999986533 333555555555
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=169.53 Aligned_cols=236 Identities=17% Similarity=0.256 Sum_probs=136.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
+|.+++....-|.+ ...+.+.||++||++.. ...|...+..|++ .||.|+++|+|| +|.+.... +......
T Consensus 36 ~g~~l~y~~~G~~~--~~~~g~plvllHG~~~~--~~~w~~~~~~l~~~~~~~Via~D~rG---~G~S~~~~-~~~~~~~ 107 (330)
T 3nwo_A 36 GDHETWVQVTTPEN--AQPHALPLIVLHGGPGM--AHNYVANIAALADETGRTVIHYDQVG---CGNSTHLP-DAPADFW 107 (330)
T ss_dssp TTEEEEEEEECCSS--CCTTCCCEEEECCTTTC--CSGGGGGGGGHHHHHTCCEEEECCTT---STTSCCCT-TSCGGGC
T ss_pred cCcEEEEEEecCcc--CCCCCCcEEEECCCCCC--chhHHHHHHHhccccCcEEEEECCCC---CCCCCCCC-CCccccc
Confidence 67778776665531 11112358899997655 3356666666765 799999999999 55553200 0011112
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc------------------
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------------ 601 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~------------------ 601 (715)
..+++.+.+..+++. ...+++.|+||||||.+++.+|.++|++++++|++++........
T Consensus 108 ~~~~~a~dl~~ll~~--lg~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (330)
T 3nwo_A 108 TPQLFVDEFHAVCTA--LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAAGDLRAQLPAETRAAL 185 (330)
T ss_dssp CHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--cCCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcchHHHHHHHHHHHHhcCHHHHHHH
Confidence 344444444444433 234789999999999999999999999999999988754321100
Q ss_pred ------cCCCCCCcee-eeccCCCCCCCCCCCCChhhHHH----------H---------------HhcCchhhccCCCC
Q 005093 602 ------GTTDIPDWCY-VESYGSKGKDSFTESPSVEDLTR----------F---------------HSKSPISHISKVKT 649 (715)
Q Consensus 602 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~---------------~~~sp~~~~~~i~~ 649 (715)
.....+.+.. ...+...........+ ...... + ...+....+.++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 264 (330)
T 3nwo_A 186 DRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTP-QDFADSVAQMEAEPTVYHTMNGPNEFHVVGTLGDWSVIDRLPDVTA 264 (330)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHTCCSSSCC-HHHHHHHHHHHHSCHHHHHHTCSCSSSCCSGGGGCBCGGGGGGCCS
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhccccCCC-HHHHHHHHhhccchhhhhcccCchhhhhhccccCCchhhhcccCCC
Confidence 0000000000 0000000000000000 000000 0 01122345677899
Q ss_pred cEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 650 PTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
|+|+++|++|.++| ..+..+.+.+ ...++++++++||....+ ...++.+.|.+||+++
T Consensus 265 P~Lvi~G~~D~~~p-~~~~~~~~~i----p~~~~~~i~~~gH~~~~e-~p~~~~~~i~~FL~~~ 322 (330)
T 3nwo_A 265 PVLVIAGEHDEATP-KTWQPFVDHI----PDVRSHVFPGTSHCTHLE-KPEEFRAVVAQFLHQH 322 (330)
T ss_dssp CEEEEEETTCSSCH-HHHHHHHHHC----SSEEEEEETTCCTTHHHH-SHHHHHHHHHHHHHHH
T ss_pred CeEEEeeCCCccCh-HHHHHHHHhC----CCCcEEEeCCCCCchhhc-CHHHHHHHHHHHHHhc
Confidence 99999999999875 3444444433 458999999999976644 3457889999999875
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-17 Score=164.21 Aligned_cols=229 Identities=17% Similarity=0.157 Sum_probs=136.5
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchh
Q 005093 463 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 542 (715)
Q Consensus 463 ~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 542 (715)
..++....-|. ...|.||++||.+.. ...|...+..|+++||.|+++|+|| ||.+... .......++
T Consensus 33 ~~l~y~~~G~~-----~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G---~G~S~~~---~~~~~~~~~ 99 (297)
T 2xt0_A 33 LRMHYVDEGPR-----DAEHTFLCLHGEPSW--SFLYRKMLPVFTAAGGRVVAPDLFG---FGRSDKP---TDDAVYTFG 99 (297)
T ss_dssp CCEEEEEESCT-----TCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCEE---SCGGGCCHH
T ss_pred eEEEEEEccCC-----CCCCeEEEECCCCCc--ceeHHHHHHHHHhCCcEEEEeCCCC---CCCCCCC---CCcccCCHH
Confidence 77765544321 115789999997654 5578888899999999999999999 6655321 111122355
Q ss_pred hHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh-----------cc-CCCCCCce
Q 005093 543 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-----------VG-TTDIPDWC 610 (715)
Q Consensus 543 d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~-----------~~-~~~~~~~~ 610 (715)
+..+.+..+++. .+.+++.|+||||||.+++.+|.++|++++++|++++....... .. ........
T Consensus 100 ~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (297)
T 2xt0_A 100 FHRRSLLAFLDA--LQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFESWRDFVANSPDLDVGK 177 (297)
T ss_dssp HHHHHHHHHHHH--HTCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCCCSSSCSCHHHHHHHHHHHTCTTCCHHH
T ss_pred HHHHHHHHHHHH--hCCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCCCcccCCchhHHHHHHHhhcccccchhH
Confidence 555555444444 23478999999999999999999999999999999874310000 00 00000000
Q ss_pred eee----ccCCCCCCCCCC-CCCh---hhHHHHHhc--------------Cchhhcc-CCCCcEEEEeeCCCCcCCchHH
Q 005093 611 YVE----SYGSKGKDSFTE-SPSV---EDLTRFHSK--------------SPISHIS-KVKTPTIFLLGAQDLRVPVSNG 667 (715)
Q Consensus 611 ~~~----~~~~~~~~~~~~-~~~~---~~~~~~~~~--------------sp~~~~~-~i~~P~Lii~G~~D~~v~~~~~ 667 (715)
... .+.......+.. .... .....+... .....+. ++++|+|+++|++|..+| ..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~Lvi~G~~D~~~~-~~~ 256 (297)
T 2xt0_A 178 LMQRAIPGITDAEVAAYDAPFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQAMSFWSTQWSGPTFMAVGAQDPVLG-PEV 256 (297)
T ss_dssp HHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHGGGGSCCSTTSTTHHHHHHHHHHHHHTCCSCEEEEEETTCSSSS-HHH
T ss_pred HHhccCccCCHHHHHHHhccccCcchhHHHHHHHHhCccccccchhhHHHHHHHHhhhccCCCeEEEEeCCCcccC-hHH
Confidence 000 000000000000 0000 000011000 0112356 899999999999999998 777
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 668 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 668 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
..+.+.+.. .....+.++++||.... ...++.+.|.+|++
T Consensus 257 ~~~~~~~p~--~~~~~~~~~~~GH~~~~--~p~~~~~~i~~fl~ 296 (297)
T 2xt0_A 257 MGMLRQAIR--GCPEPMIVEAGGHFVQE--HGEPIARAALAAFG 296 (297)
T ss_dssp HHHHHHHST--TCCCCEEETTCCSSGGG--GCHHHHHHHHHHTT
T ss_pred HHHHHhCCC--CeeEEeccCCCCcCccc--CHHHHHHHHHHHHh
Confidence 777666643 33334457899998765 55688888999875
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=164.06 Aligned_cols=215 Identities=16% Similarity=0.131 Sum_probs=128.1
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
..|.||++||.+.+ ...|...+..|++. |.|+++|+|| +|.+... . ...+++..+.+..+++. ...
T Consensus 15 ~~~~vvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~---~---~~~~~~~a~dl~~~l~~--l~~ 80 (255)
T 3bf7_A 15 NNSPIVLVHGLFGS--LDNLGVLARDLVND-HNIIQVDVRN---HGLSPRE---P---VMNYPAMAQDLVDTLDA--LQI 80 (255)
T ss_dssp CCCCEEEECCTTCC--TTTTHHHHHHHTTT-SCEEEECCTT---STTSCCC---S---CCCHHHHHHHHHHHHHH--HTC
T ss_pred CCCCEEEEcCCccc--HhHHHHHHHHHHhh-CcEEEecCCC---CCCCCCC---C---CcCHHHHHHHHHHHHHH--cCC
Confidence 45779999996654 45678888888766 9999999999 6655321 1 12344444444333333 134
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh------h----hcc--CCCCCCceee-eccCCCCC------
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA------L----MVG--TTDIPDWCYV-ESYGSKGK------ 620 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~------~----~~~--~~~~~~~~~~-~~~~~~~~------ 620 (715)
+++.|+||||||.+++.+|.++|++++++|++++..... . +.. .......... ..+.....
T Consensus 81 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (255)
T 3bf7_A 81 DKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ 160 (255)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCHHHHH
T ss_pred CCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchhHHHH
Confidence 689999999999999999999999999999875321000 0 000 0000000000 00000000
Q ss_pred ---CCCCC---CCChhhHH-HHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 621 ---DSFTE---SPSVEDLT-RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 621 ---~~~~~---~~~~~~~~-~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
..+.. ........ .+........+.++++|+|+++|++|..++++.+..+.+.+ ...++++++++||..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~ 236 (255)
T 3bf7_A 161 FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQF----PQARAHVIAGAGHWV 236 (255)
T ss_dssp HHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSCEEEECBTTCSTTCGGGHHHHHHHC----TTEEECCBTTCCSCH
T ss_pred HHHHhccCCceeecHHHHHhhhhhccccccccccCCCeEEEECCCCCCCCHHHHHHHHHHC----CCCeEEEeCCCCCcc
Confidence 00000 00000000 00000000124578899999999999999988776665554 348899999999986
Q ss_pred CCCCchHHHHHHHHHHHHHh
Q 005093 694 ERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 694 ~~~~~~~~~~~~i~~wl~~~ 713 (715)
..+. ...+.+.+.+|+++|
T Consensus 237 ~~e~-p~~~~~~i~~fl~~~ 255 (255)
T 3bf7_A 237 HAEK-PDAVLRAIRRYLNDH 255 (255)
T ss_dssp HHHC-HHHHHHHHHHHHHTC
T ss_pred ccCC-HHHHHHHHHHHHhcC
Confidence 6444 457888999999865
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=169.19 Aligned_cols=230 Identities=16% Similarity=0.177 Sum_probs=138.1
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchh
Q 005093 463 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 542 (715)
Q Consensus 463 ~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 542 (715)
..++....-|. .+.|.||++||.+.. ...|...+..|+++||.|+++|+|| ||.+... .......++
T Consensus 34 ~~l~y~~~G~~-----~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G---~G~S~~~---~~~~~y~~~ 100 (310)
T 1b6g_A 34 LRAHYLDEGNS-----DAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFG---FGKSDKP---VDEEDYTFE 100 (310)
T ss_dssp CEEEEEEEECT-----TCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCEE---SCGGGCCHH
T ss_pred eEEEEEEeCCC-----CCCCEEEEECCCCCc--hhhHHHHHHHHHhCCCeEEEeCCCC---CCCCCCC---CCcCCcCHH
Confidence 77765554332 114789999997654 5578888899999999999999999 6665321 111123355
Q ss_pred hHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcch--hhh------hccCCCCC--Cceee
Q 005093 543 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN--LAL------MVGTTDIP--DWCYV 612 (715)
Q Consensus 543 d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~--~~~------~~~~~~~~--~~~~~ 612 (715)
+..+.+..+++. .+.+++.|+||||||.+++.+|.++|++++++|++++... ... ........ .|...
T Consensus 101 ~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (310)
T 1b6g_A 101 FHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGFTAWKYD 178 (310)
T ss_dssp HHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchhhhhhccchHHHHHHHH
Confidence 555555544444 2347899999999999999999999999999999987431 000 00000000 00000
Q ss_pred ec-----------------cCCCCCCCCCC-CCCh---hhHHHHHh--c-----------Cchhhcc-CCCCcEEEEeeC
Q 005093 613 ES-----------------YGSKGKDSFTE-SPSV---EDLTRFHS--K-----------SPISHIS-KVKTPTIFLLGA 657 (715)
Q Consensus 613 ~~-----------------~~~~~~~~~~~-~~~~---~~~~~~~~--~-----------sp~~~~~-~i~~P~Lii~G~ 657 (715)
.. +.......+.. .... .....+.. . .....+. ++++|+|+++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~Lvi~G~ 258 (310)
T 1b6g_A 179 LVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAISFWQNDWNGQTFMAIGM 258 (310)
T ss_dssp HHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSEEEEEEET
T ss_pred hccCchhhhhhHHhhcCCCCCHHHHHHHhcccCCccchHHHHHHHHHhcccccchhhhhhhHhhhhhccccCceEEEecc
Confidence 00 00000000000 0000 00000000 0 0112356 899999999999
Q ss_pred CCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 658 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 658 ~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+|..+| ..+..+.+.+.. .....++++++||.... ...++.+.|.+|+++
T Consensus 259 ~D~~~~-~~~~~~~~~ip~--~~~~~i~~~~~GH~~~~--~p~~~~~~i~~Fl~~ 308 (310)
T 1b6g_A 259 KDKLLG-PDVMYPMKALIN--GCPEPLEIADAGHFVQE--FGEQVAREALKHFAE 308 (310)
T ss_dssp TCSSSS-HHHHHHHHHHST--TCCCCEEETTCCSCGGG--GHHHHHHHHHHHHHH
T ss_pred Ccchhh-hHHHHHHHhccc--ccceeeecCCcccchhh--ChHHHHHHHHHHHhc
Confidence 999999 777777666643 23333334999998775 566889999999975
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-17 Score=153.46 Aligned_cols=180 Identities=16% Similarity=0.117 Sum_probs=121.3
Q ss_pred CcEEEEEcCCCCCCCCccchHHHH-HHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~-~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
.|.||++||.+.... ..|...+. .|+++||.|+++|+|.+.. + ..+++.+.+..+.+. . .
T Consensus 4 ~p~vv~~HG~~~~~~-~~~~~~~~~~l~~~g~~v~~~d~~~~~~---------~------~~~~~~~~~~~~~~~--~-~ 64 (192)
T 1uxo_A 4 TKQVYIIHGYRASST-NHWFPWLKKRLLADGVQADILNMPNPLQ---------P------RLEDWLDTLSLYQHT--L-H 64 (192)
T ss_dssp CCEEEEECCTTCCTT-STTHHHHHHHHHHTTCEEEEECCSCTTS---------C------CHHHHHHHHHTTGGG--C-C
T ss_pred CCEEEEEcCCCCCcc-hhHHHHHHHHHHhCCcEEEEecCCCCCC---------C------CHHHHHHHHHHHHHh--c-c
Confidence 578999999765532 14666564 6889999999999993211 1 355555555544444 2 5
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCC--ceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHh
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHS 637 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (715)
++++++|||+||.+++.++.++|+ +++++|+++|....... +. . ...+...+.
T Consensus 65 ~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~--------~~---~-----~~~~~~~~~--------- 119 (192)
T 1uxo_A 65 ENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPT--------LQ---M-----LDEFTQGSF--------- 119 (192)
T ss_dssp TTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTT--------CG---G-----GGGGTCSCC---------
T ss_pred CCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCcccc--------ch---h-----hhhhhhcCC---------
Confidence 789999999999999999999999 99999999986542110 00 0 000100010
Q ss_pred cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCC--chHHHHHHHHHHHH
Q 005093 638 KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ--SDFESFLNIGLWFK 711 (715)
Q Consensus 638 ~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~--~~~~~~~~i~~wl~ 711 (715)
....+.++++|+|+++|++|..+|++.+..+.+.+ ..++++++++||.+.... ...++.+.+.+|++
T Consensus 120 --~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~l~ 188 (192)
T 1uxo_A 120 --DHQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQI-----DAALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFS 188 (192)
T ss_dssp --CHHHHHHHEEEEEEEEETTCSSSCHHHHHHHHHHT-----TCEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHH
T ss_pred --CHHHHHhhcCCEEEEecCCCCcCCHHHHHHHHHhc-----CceEEEeCCCcCcccccccccHHHHHHHHHHHHH
Confidence 01234456689999999999999999888877766 367899999999876432 22334445555554
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-17 Score=160.34 Aligned_cols=218 Identities=17% Similarity=0.103 Sum_probs=129.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
+..|.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.... .....+++..+.+..+++.-. .
T Consensus 8 ~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G---~G~S~~~~----~~~~~~~~~a~dl~~~l~~l~-~ 77 (264)
T 2wfl_A 8 KQQKHFVLVHGGCLG--AWIWYKLKPLLESAGHKVTAVDLSA---AGINPRRL----DEIHTFRDYSEPLMEVMASIP-P 77 (264)
T ss_dssp -CCCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTCSCCG----GGCCSHHHHHHHHHHHHHHSC-T
T ss_pred CCCCeEEEECCCccc--cchHHHHHHHHHhCCCEEEEeecCC---CCCCCCCc----ccccCHHHHHHHHHHHHHHhC-C
Confidence 456889999997644 4568888999999999999999999 55543110 011235555555554444421 1
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh---------hhccCCCCCCce--eeeccCC----------
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWC--YVESYGS---------- 617 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~---------~~~~~~~~~~~~--~~~~~~~---------- 617 (715)
.+++.|+||||||.+++.++.++|++++++|++++..... ..........+. ....+..
T Consensus 78 ~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (264)
T 2wfl_A 78 DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYGNPENPGMSMIL 157 (264)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCCCCTTSCTTHHHHHHHHHSCTTTTTTCEEEEESCTTSCEEEEEC
T ss_pred CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeeccCCCCcchhhHHHHhhhcCcchhhhhhhhhhccCCCCCcchhhh
Confidence 3689999999999999999999999999999988642100 000000000000 0000000
Q ss_pred --CCC-CCCCCCCChhhHHHHH-hcCch----------hhc---cCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCc
Q 005093 618 --KGK-DSFTESPSVEDLTRFH-SKSPI----------SHI---SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 680 (715)
Q Consensus 618 --~~~-~~~~~~~~~~~~~~~~-~~sp~----------~~~---~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~ 680 (715)
... ..+............. ...+. ..+ ...++|+|+++|++|..+|++.+..+.+.+. .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~p----~ 233 (264)
T 2wfl_A 158 GPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVG----A 233 (264)
T ss_dssp CHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHTTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHHC----C
T ss_pred hHHHHHHHHhcCCCHHHHHHHHhccCCCcccccccccccccChHHhCCCCeEEEEeCCcCCCCHHHHHHHHHhCC----C
Confidence 000 0000000111111000 00000 000 1135899999999999999888877776663 3
Q ss_pred EEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 681 TKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 681 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
.++++++++||....+. ..++.+.+.+|++
T Consensus 234 ~~~~~i~~~gH~~~~e~-P~~~~~~l~~f~~ 263 (264)
T 2wfl_A 234 DKVKEIKEADHMGMLSQ-PREVCKCLLDISD 263 (264)
T ss_dssp SEEEEETTCCSCHHHHS-HHHHHHHHHHHHC
T ss_pred ceEEEeCCCCCchhhcC-HHHHHHHHHHHhh
Confidence 68899999999866443 3477788888874
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=174.17 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=91.0
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---------ccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---------SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 532 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~---------~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~ 532 (715)
...+.|+++.|.+..+.+++|+||++||++..... ..+...+..|+++||.|+++|+||.+..+...
T Consensus 60 ~~~~~g~l~~P~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V~~~D~~G~G~s~~~~---- 135 (397)
T 3h2g_A 60 PATASGVLLIPGGERCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAY---- 135 (397)
T ss_dssp EEEEEEEEEEEECTTCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEEEEECCTTSTTCCCSS----
T ss_pred eEEEEEEEEeCCCCCCCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEEEEecCCCCCCCCCCc----
Confidence 35799999999876556789999999997665321 12556788899999999999999954432111
Q ss_pred CCCCCc-----cchhhHHHHHHHHHHc-CCCCCceEEEEEeChhHHHHHHHHhh-CC----C-ceeEEEecCCcchhh
Q 005093 533 PGKVGS-----QDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQ-AP----D-KFVAAAARNPLCNLA 598 (715)
Q Consensus 533 ~~~~~~-----~~~~d~~~~i~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~-~p----~-~~~~~v~~~~~~~~~ 598 (715)
..+.. ..+.|..+++..+.+. +..++++|+|+|||+||++++.++.. .+ + .+.+++..++..++.
T Consensus 136 -~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (397)
T 3h2g_A 136 -HPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVASAPISGPYALE 212 (397)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEEEEEESCCSSHH
T ss_pred -cchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEEEecccccccHH
Confidence 11111 2344555555555544 33356899999999999999887622 22 1 578888888877764
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-17 Score=161.04 Aligned_cols=208 Identities=14% Similarity=0.226 Sum_probs=129.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHH------
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI------ 552 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~------ 552 (715)
++.|+||++||.+.. ...|. .+..|+ +||.|+++|+|| +|.+. .......++..+.+..++
T Consensus 14 ~~~~~vv~~hG~~~~--~~~~~-~~~~l~-~g~~v~~~d~~g---~g~s~------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3e0x_A 14 KSPNTLLFVHGSGCN--LKIFG-ELEKYL-EDYNCILLDLKG---HGESK------GQCPSTVYGYIDNVANFITNSEVT 80 (245)
T ss_dssp TCSCEEEEECCTTCC--GGGGT-TGGGGC-TTSEEEEECCTT---STTCC------SCCCSSHHHHHHHHHHHHHHCTTT
T ss_pred CCCCEEEEEeCCccc--HHHHH-HHHHHH-hCCEEEEecCCC---CCCCC------CCCCcCHHHHHHHHHHHHHhhhhH
Confidence 357899999996655 44555 556665 899999999999 44432 111224556666555555
Q ss_pred HcCCCCCceEEEEEeChhHHHHHHHHhh-CCCceeEEEecCCcchhhhhcc------CCCCCCceeeec-cCC-------
Q 005093 553 DMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVG------TTDIPDWCYVES-YGS------- 617 (715)
Q Consensus 553 ~~~~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~------- 617 (715)
+. .. +++|+|||+||.+++.++.+ +|+ ++++|+++|......... ........+... ...
T Consensus 81 ~~--~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (245)
T 3e0x_A 81 KH--QK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSE 155 (245)
T ss_dssp TT--CS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSHHHH
T ss_pred hh--cC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchHHHH
Confidence 33 23 99999999999999999999 999 999999999765411100 000000000000 000
Q ss_pred CCCCCCCCCCC--hhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCC
Q 005093 618 KGKDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 695 (715)
Q Consensus 618 ~~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 695 (715)
.....+...+. ..........+....+.++++|+|+++|++|..+|.+.+..+.+.+. .+++++++++||.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~ 231 (245)
T 3e0x_A 156 KYFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVE----NSELKIFETGKHFLLV 231 (245)
T ss_dssp HHHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEESSCGGGHHH
T ss_pred HHHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCCHHHHHHHHHHcC----CceEEEeCCCCcceEE
Confidence 00000000000 01111223344556678899999999999999999888877776653 4889999999998653
Q ss_pred CCchHHHHHHHHHH
Q 005093 696 PQSDFESFLNIGLW 709 (715)
Q Consensus 696 ~~~~~~~~~~i~~w 709 (715)
. ...++.+.+.+|
T Consensus 232 ~-~~~~~~~~i~~f 244 (245)
T 3e0x_A 232 V-NAKGVAEEIKNF 244 (245)
T ss_dssp H-THHHHHHHHHTT
T ss_pred e-cHHHHHHHHHhh
Confidence 3 333555555555
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-17 Score=164.58 Aligned_cols=215 Identities=14% Similarity=0.181 Sum_probs=131.4
Q ss_pred cEEEEEcCCC-CCCCCccchHHH-HHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 482 PLIVVLHGGP-HSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 482 P~vv~iHGg~-~~~~~~~~~~~~-~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
|.||++||.+ .......|...+ ..|++. |.|+++|+|| +|.+... . ......++..+.+..+++. .+.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~~~-~~vi~~D~~G---~G~S~~~---~-~~~~~~~~~~~~l~~~l~~--l~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVEAG-YRVILLDCPG---WGKSDSV---V-NSGSRSDLNARILKSVVDQ--LDI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHHTT-CEEEEECCTT---STTSCCC---C-CSSCHHHHHHHHHHHHHHH--TTC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHhcC-CeEEEEcCCC---CCCCCCC---C-ccccCHHHHHHHHHHHHHH--hCC
Confidence 3899999954 222234566666 667654 9999999999 5554321 1 1123466666666666665 245
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCC------------CCCceeeeccCCCCCCCCCCCC
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVESYGSKGKDSFTESP 627 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 627 (715)
+++.|+||||||.+++.+|.++|++++++|++++............ .+.......+....... ....
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 185 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFD-TSDL 185 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSC-TTSC
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcC-cccC
Confidence 7899999999999999999999999999999887542100000000 00000000000000000 0000
Q ss_pred Chhh--------------HHHHH---------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEE
Q 005093 628 SVED--------------LTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 684 (715)
Q Consensus 628 ~~~~--------------~~~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (715)
.... ...+. ..+....+.++++|+|+++|++|..+|++.+..+.+.+. ..+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~ 261 (289)
T 1u2e_A 186 TDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIA----GSELH 261 (289)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHST----TCEEE
T ss_pred CHHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhcCCCeEEEeeCCCCccCHHHHHHHHhhCC----CcEEE
Confidence 0000 00000 011224567889999999999999999988877776653 36899
Q ss_pred EeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 685 VFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 685 ~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+++++||....+. ..++.+.+.+|+++
T Consensus 262 ~i~~~gH~~~~e~-p~~~~~~i~~fl~~ 288 (289)
T 1u2e_A 262 IFRDCGHWAQWEH-ADAFNQLVLNFLAR 288 (289)
T ss_dssp EESSCCSCHHHHT-HHHHHHHHHHHHTC
T ss_pred EeCCCCCchhhcC-HHHHHHHHHHHhcC
Confidence 9999999865443 45778888888863
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=169.44 Aligned_cols=213 Identities=17% Similarity=0.161 Sum_probs=130.9
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.. ...|...+..| ||.|+++|+|| +|.+.. ........++..+.+..+++. .+.+
T Consensus 81 ~~~vv~~hG~~~~--~~~~~~~~~~l---g~~Vi~~D~~G---~G~S~~----~~~~~~~~~~~a~dl~~~l~~--l~~~ 146 (330)
T 3p2m_A 81 APRVIFLHGGGQN--AHTWDTVIVGL---GEPALAVDLPG---HGHSAW----REDGNYSPQLNSETLAPVLRE--LAPG 146 (330)
T ss_dssp CCSEEEECCTTCC--GGGGHHHHHHS---CCCEEEECCTT---STTSCC----CSSCBCCHHHHHHHHHHHHHH--SSTT
T ss_pred CCeEEEECCCCCc--cchHHHHHHHc---CCeEEEEcCCC---CCCCCC----CCCCCCCHHHHHHHHHHHHHH--hCCC
Confidence 4779999997655 44566665555 99999999999 554431 111233456666666666655 3457
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCC-CCCCC----------CCCCCCh
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS-KGKDS----------FTESPSV 629 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~ 629 (715)
++.|+|||+||.+++.+|.++|++++++|+++|........................ ..... .......
T Consensus 147 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (330)
T 3p2m_A 147 AEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREFPSFQAMLDLTIAAAPHRDV 226 (330)
T ss_dssp CCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC-----------CCBSCHHHHHHHHHHHCTTSCH
T ss_pred CcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhhcCCccccCHHHHHHHHHhcCCCCCH
Confidence 899999999999999999999999999999998654321100000000000000000 00000 0000000
Q ss_pred hhHHHHHhc------------------------CchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEE-EE
Q 005093 630 EDLTRFHSK------------------------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK-VI 684 (715)
Q Consensus 630 ~~~~~~~~~------------------------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~-~~ 684 (715)
......... .....+.++++|+|+++|++|..+|.+.+..+.+.+. ..+ ++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~~~~l~~~~~----~~~~~~ 302 (330)
T 3p2m_A 227 KSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPITLVRGGSSGFVTDQDTAELHRRAT----HFRGVH 302 (330)
T ss_dssp HHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCEEEEEETTCCSSCHHHHHHHHHHCS----SEEEEE
T ss_pred HHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeeEE
Confidence 000000000 0012456789999999999999999888877766553 467 99
Q ss_pred EeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 685 VFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 685 ~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+++++||.+... ...++.+.|.+||++
T Consensus 303 ~i~~~gH~~~~e-~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 303 IVEKSGHSVQSD-QPRALIEIVRGVLDT 329 (330)
T ss_dssp EETTCCSCHHHH-CHHHHHHHHHHHTTC
T ss_pred EeCCCCCCcchh-CHHHHHHHHHHHHhc
Confidence 999999987543 445778888888864
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.7e-17 Score=169.14 Aligned_cols=246 Identities=13% Similarity=0.112 Sum_probs=146.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-------cchHHHH---HHHhCCcEEEEEcCCC-CCCCchhhh
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-------SYSKSLA---FLSSVGYSLLIVNYRG-SLGFGEEAL 529 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-------~~~~~~~---~la~~G~~vi~~d~rG-~~~~g~~~~ 529 (715)
+|..++...+-+. ...+.|+||++||.+...... .|...+. .|+++||.|+++|+|| .++......
T Consensus 42 ~g~~l~y~~~g~~---~~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~~ 118 (377)
T 2b61_A 42 SYINVAYQTYGTL---NDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSS 118 (377)
T ss_dssp CSEEEEEEEESCC---CTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTS
T ss_pred cceeEEEEecccc---cccCCCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCcc
Confidence 4555654444332 222368999999976653220 1555543 3668999999999999 343321110
Q ss_pred -hcC-C----CCCCccchhhHHHHHHHHHHcCCCCCceEE-EEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh---
Q 005093 530 -QSL-P----GKVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--- 599 (715)
Q Consensus 530 -~~~-~----~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~--- 599 (715)
... . ..+....++++.+.+..+++. .+.+++. |+||||||.+++.+|.++|++++++|++++......
T Consensus 119 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 196 (377)
T 2b61_A 119 INPQTGKPYGSQFPNIVVQDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAI 196 (377)
T ss_dssp BCTTTSSBCGGGCCCCCHHHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHH
T ss_pred cCccccccccccCCcccHHHHHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCccccccch
Confidence 000 0 000123577777777777766 3457887 999999999999999999999999999998643210
Q ss_pred -hc-----cCCCCCCcee------------------------------eeccCCCCCCC--------------------C
Q 005093 600 -MV-----GTTDIPDWCY------------------------------VESYGSKGKDS--------------------F 623 (715)
Q Consensus 600 -~~-----~~~~~~~~~~------------------------------~~~~~~~~~~~--------------------~ 623 (715)
.. .....+.|.. ...+....... +
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (377)
T 2b61_A 197 GFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKF 276 (377)
T ss_dssp HHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCccccccchhccCCCchhhhHHHHhhhhcccCHHHHHHHhccccccccccccchHHHHHHHHhhhhhh
Confidence 00 0000000000 00000000000 0
Q ss_pred CCCCChhhH----HHHHhcC-------chhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeC-CCCc
Q 005093 624 TESPSVEDL----TRFHSKS-------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP-NDVH 691 (715)
Q Consensus 624 ~~~~~~~~~----~~~~~~s-------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H 691 (715)
......... ..+...+ ....+.++++|+|+++|++|.++|++++.+..+.+.+....+++++++ ++||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~gH 356 (377)
T 2b61_A 277 LERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYGH 356 (377)
T ss_dssp HTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTGG
T ss_pred ccccChhHHHHHHHHHhccccccccchHHhhhhhcCCCEEEEecCCcccCCccchHHHHHHHHhcCCCceEEEeCCCCCc
Confidence 000000000 0011111 134567889999999999999999966666667777666678999999 9999
Q ss_pred cCCCCCchHHHHHHHHHHHHH
Q 005093 692 GIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~~ 712 (715)
...... ..++.+.|.+||++
T Consensus 357 ~~~~e~-p~~~~~~i~~fl~~ 376 (377)
T 2b61_A 357 DAFLVD-YDQFEKRIRDGLAG 376 (377)
T ss_dssp GHHHHC-HHHHHHHHHHHHHT
T ss_pred hhhhcC-HHHHHHHHHHHHhc
Confidence 866443 44788899999975
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=162.35 Aligned_cols=233 Identities=12% Similarity=0.148 Sum_probs=134.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
.+|.+++....- +.|.||++||.+.. ...|...+..|++ ||.|+++|+|| +|.+............
T Consensus 20 ~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~~-~~~v~~~D~~G---~G~S~~~~~~~~~~~~ 85 (306)
T 3r40_A 20 TSSGRIFARVGG--------DGPPLLLLHGFPQT--HVMWHRVAPKLAE-RFKVIVADLPG---YGWSDMPESDEQHTPY 85 (306)
T ss_dssp CTTCCEEEEEEE--------CSSEEEEECCTTCC--GGGGGGTHHHHHT-TSEEEEECCTT---STTSCCCCCCTTCGGG
T ss_pred eCCEEEEEEEcC--------CCCeEEEECCCCCC--HHHHHHHHHHhcc-CCeEEEeCCCC---CCCCCCCCCCcccCCC
Confidence 367777654431 35789999997655 4567778888877 99999999999 5544321111111133
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC--------------C
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT--------------D 605 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~--------------~ 605 (715)
..+++.+.+..+++. .+.+++.|+|||+||.+++.+|.++|++++++|++++........... .
T Consensus 86 ~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (306)
T 3r40_A 86 TKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYEYWQRMNRAYALKIYHWSFLAQ 163 (306)
T ss_dssp SHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHHHHHHHCSHHHHHHSTHHHHHTS
T ss_pred CHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCccchhhhhhhhhhhhHHHHHhhc
Confidence 466666666666665 345789999999999999999999999999999999754321110000 0
Q ss_pred CC----------CceeeeccCCCCCCC-CCCCCChhhHHHHHh--cCc------------------------hhhccCCC
Q 005093 606 IP----------DWCYVESYGSKGKDS-FTESPSVEDLTRFHS--KSP------------------------ISHISKVK 648 (715)
Q Consensus 606 ~~----------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~sp------------------------~~~~~~i~ 648 (715)
.. ...+...+....... ..........+.+.. ..+ ...+.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 243 (306)
T 3r40_A 164 PAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEHYRIAFADPMRRHVMCEDYRAGAYADFEHDKIDVEAGNKIP 243 (306)
T ss_dssp CTTHHHHHHTSCHHHHHHHHHHHTSSSSSSTTSCHHHHHHHHHHHTSHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCBC
T ss_pred ccchHHHHHcCCHHHHHHHHhhcccCCCccccCCHHHHHHHHHHHccCCCcchhhHHHHhcccccchhhhhhhhhccCCC
Confidence 00 000000000000000 000001111111110 000 01347889
Q ss_pred CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 649 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+|+|+++|++|.+++.....+..+.+ ...++++++ ++||..... ...++.+.|.+||++.
T Consensus 244 ~P~lii~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~-~~gH~~~~e-~p~~~~~~i~~fl~~~ 303 (306)
T 3r40_A 244 VPMLALWGASGIAQSAATPLDVWRKW---ASDVQGAPI-ESGHFLPEE-APDQTAEALVRFFSAA 303 (306)
T ss_dssp SCEEEEEETTCC------CHHHHHHH---BSSEEEEEE-SSCSCHHHH-SHHHHHHHHHHHHHC-
T ss_pred cceEEEEecCCcccCchhHHHHHHhh---cCCCeEEEe-cCCcCchhh-ChHHHHHHHHHHHHhc
Confidence 99999999999999854444443333 345777888 679976543 4457888999999864
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-17 Score=168.45 Aligned_cols=225 Identities=13% Similarity=0.190 Sum_probs=139.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..++...+-+ ...|+||++||.+.. ...|...+..|+ +||.|+++|+|| +|.+... .....
T Consensus 18 ~g~~l~~~~~g~------~~~~~vl~lHG~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G---~G~s~~~-----~~~~~ 80 (299)
T 3g9x_A 18 LGERMHYVDVGP------RDGTPVLFLHGNPTS--SYLWRNIIPHVA-PSHRCIAPDLIG---MGKSDKP-----DLDYF 80 (299)
T ss_dssp TTEEEEEEEESC------SSSCCEEEECCTTCC--GGGGTTTHHHHT-TTSCEEEECCTT---STTSCCC-----CCCCC
T ss_pred CCeEEEEEecCC------CCCCEEEEECCCCcc--HHHHHHHHHHHc-cCCEEEeeCCCC---CCCCCCC-----CCccc
Confidence 677776555432 235789999997655 456777777775 699999999999 5544321 11344
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCC----------CCC--
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD----------IPD-- 608 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~----------~~~-- 608 (715)
.+++.+.+..+++. .+.++++|+|||+||.+++.+|.++|++++++|++++............ .+.
T Consensus 81 ~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (299)
T 3g9x_A 81 FDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRTADVG 158 (299)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCCBSSGGGSCGGGHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcchhhhhhcchHHHHHHHHHcCCCcc
Confidence 66777777666665 3457899999999999999999999999999999885433210000000 000
Q ss_pred -------ceeeeccCCCCCCCCCCCCChhhHHHH-----------------Hhc--------------CchhhccCCCCc
Q 005093 609 -------WCYVESYGSKGKDSFTESPSVEDLTRF-----------------HSK--------------SPISHISKVKTP 650 (715)
Q Consensus 609 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~--------------sp~~~~~~i~~P 650 (715)
..+...+.. ..............+ ... +....+.++++|
T Consensus 159 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 235 (299)
T 3g9x_A 159 RELIIDQNAFIEGALP---KCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVP 235 (299)
T ss_dssp HHHHTTSCHHHHTHHH---HTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCSC
T ss_pred hhhhccchhhHHHhhh---hhhccCCCHHHHHHHHHHhccccccchhhhhhhhhhhccccchhhhhhhhhhhhcccCCCC
Confidence 000000000 000000000111110 000 111235678999
Q ss_pred EEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 651 TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 651 ~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+|+++|++|..+|++.+..+.+.+. .+++++++++||.+.... ..++.+.|.+++.+
T Consensus 236 ~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~e~-p~~~~~~i~~~~~~ 292 (299)
T 3g9x_A 236 KLLFWGTPGVLIPPAEAARLAESLP----NCKTVDIGPGLHYLQEDN-PDLIGSEIARWLPA 292 (299)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHST----TEEEEEEEEESSCHHHHC-HHHHHHHHHHHSGG
T ss_pred eEEEecCCCCCCCHHHHHHHHhhCC----CCeEEEeCCCCCcchhcC-HHHHHHHHHHHHhh
Confidence 9999999999999988877776653 478999999999865433 44667777776654
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=159.46 Aligned_cols=218 Identities=17% Similarity=0.143 Sum_probs=132.4
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+.... .....+++..+.+..+++.-. ..+
T Consensus 4 ~~~vvllHG~~~~--~~~w~~~~~~L~~~g~rVia~Dl~G---~G~S~~~~----~~~~~~~~~a~dl~~~l~~l~-~~~ 73 (273)
T 1xkl_A 4 GKHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAA---SGTDLRKI----EELRTLYDYTLPLMELMESLS-ADE 73 (273)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTT---STTCCCCG----GGCCSHHHHHHHHHHHHHTSC-SSS
T ss_pred CCeEEEECCCCCC--cchHHHHHHHHHhCCCEEEEecCCC---CCCCccCc----ccccCHHHHHHHHHHHHHHhc-cCC
Confidence 4779999997644 4568888899999999999999999 55542110 011245666665555555421 136
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh---------hhccCCCCCCce--eeeccCCC-----------
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWC--YVESYGSK----------- 618 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~---------~~~~~~~~~~~~--~~~~~~~~----------- 618 (715)
++.|+||||||.+++.+|.++|++++++|++++..... .+........|. ....+...
T Consensus 74 ~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (273)
T 1xkl_A 74 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGP 153 (273)
T ss_dssp CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCH
T ss_pred CEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCccccccCH
Confidence 89999999999999999999999999999988642100 000000000000 00000000
Q ss_pred -CC-CCCCCCCChhhHHHHH-hcCc-------------hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEE
Q 005093 619 -GK-DSFTESPSVEDLTRFH-SKSP-------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 682 (715)
Q Consensus 619 -~~-~~~~~~~~~~~~~~~~-~~sp-------------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (715)
.. ..+............. ...+ +......++|+|+++|++|..+|+..++.+.+.+. ..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~p----~~~ 229 (273)
T 1xkl_A 154 KFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIG----VTE 229 (273)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHC----CSE
T ss_pred HHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCCeEEEEeCCccCCCHHHHHHHHHhCC----CCe
Confidence 00 0000000001000000 0000 00001135899999999999999888877777663 368
Q ss_pred EEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 683 VIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 683 ~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+++++++||....+. ..++.+.|.+|+++.
T Consensus 230 ~~~i~~aGH~~~~e~-P~~~~~~i~~fl~~~ 259 (273)
T 1xkl_A 230 AIEIKGADHMAMLCE-PQKLCASLLEIAHKY 259 (273)
T ss_dssp EEEETTCCSCHHHHS-HHHHHHHHHHHHHHC
T ss_pred EEEeCCCCCCchhcC-HHHHHHHHHHHHHHh
Confidence 899999999876444 447888999999764
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-17 Score=166.77 Aligned_cols=217 Identities=15% Similarity=0.127 Sum_probs=132.1
Q ss_pred CcEEEEEcCCC-CCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 481 DPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 481 ~P~vv~iHGg~-~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
.|.||++||.+ .......|...+..|++. |.|+++|+|| +|.+. . . ......++..+.+..+++.- ..
T Consensus 36 g~~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~Dl~G---~G~S~-~---~-~~~~~~~~~~~dl~~~l~~l--~~ 104 (296)
T 1j1i_A 36 GQPVILIHGGGAGAESEGNWRNVIPILARH-YRVIAMDMLG---FGKTA-K---P-DIEYTQDRRIRHLHDFIKAM--NF 104 (296)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHTTT-SEEEEECCTT---STTSC-C---C-SSCCCHHHHHHHHHHHHHHS--CC
T ss_pred CCeEEEECCCCCCcchHHHHHHHHHHHhhc-CEEEEECCCC---CCCCC-C---C-CCCCCHHHHHHHHHHHHHhc--CC
Confidence 46799999964 222234566677778665 9999999999 55543 1 1 11223555555555555442 23
Q ss_pred -ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC-CCC----CCceeeeccCCCCCCCCCCCCChhh--
Q 005093 560 -SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDI----PDWCYVESYGSKGKDSFTESPSVED-- 631 (715)
Q Consensus 560 -~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-- 631 (715)
+++.|+||||||.+++.+|.++|++++++|+++|.......... ... +.......+....... ........
T Consensus 105 ~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 183 (296)
T 1j1i_A 105 DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGMVHLVKALTND-GFKIDDAMIN 183 (296)
T ss_dssp SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHHHHHHHHHSCT-TCCCCHHHHH
T ss_pred CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCchHHHHHHHHhccC-cccccHHHHH
Confidence 68999999999999999999999999999999886421100000 000 0000000000000000 00000000
Q ss_pred -----------HHHHH-----------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCC
Q 005093 632 -----------LTRFH-----------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 689 (715)
Q Consensus 632 -----------~~~~~-----------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (715)
...+. .......+.++++|+|+++|++|..+|++.+..+.+.+. ..++++++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~ 259 (296)
T 1j1i_A 184 SRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETAYKFLDLID----DSWGYIIPHC 259 (296)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHCT----TEEEEEESSC
T ss_pred HHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEECCCcccCHHHHHHHHHHCC----CCEEEEECCC
Confidence 00000 011223467889999999999999999888877766553 4789999999
Q ss_pred CccCCCCCchHHHHHHHHHHHHHhc
Q 005093 690 VHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 690 ~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
||....+ ...++.+.|.+||.+.+
T Consensus 260 gH~~~~e-~p~~~~~~i~~fl~~~~ 283 (296)
T 1j1i_A 260 GHWAMIE-HPEDFANATLSFLSLRV 283 (296)
T ss_dssp CSCHHHH-SHHHHHHHHHHHHHHC-
T ss_pred CCCchhc-CHHHHHHHHHHHHhccC
Confidence 9976543 35578889999998754
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=174.49 Aligned_cols=232 Identities=16% Similarity=0.182 Sum_probs=143.6
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
.+|.+++.... ++.|+||++||++.. ...|...+..|+++||.|+++|+|| +|.+.. +......
T Consensus 245 ~dg~~l~~~~~--------g~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~D~~G---~G~S~~---~~~~~~~ 308 (555)
T 3i28_A 245 KPRVRLHFVEL--------GSGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKG---YGESSA---PPEIEEY 308 (555)
T ss_dssp ETTEEEEEEEE--------CSSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTSCC---CSCGGGG
T ss_pred CCCcEEEEEEc--------CCCCEEEEEeCCCCc--hhHHHHHHHHHHhCCCEEEEecCCC---CCCCCC---CCCcccc
Confidence 36777764332 245899999997655 4577888999999999999999999 554432 1111222
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh-------------------
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM------------------- 600 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~------------------- 600 (715)
..+++.+.+..+++. ++.++++++|||+||.+++.++.++|++++++|++++.......
T Consensus 309 ~~~~~~~d~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (555)
T 3i28_A 309 CMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKANPVFDYQLY 386 (555)
T ss_dssp SHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCTTSCHHHHHHTCGGGHHHHH
T ss_pred cHHHHHHHHHHHHHH--cCCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCCCCCCcccchHHHHhcCCccchhHH
Confidence 345555544444443 24578999999999999999999999999999998875321000
Q ss_pred ----------------------ccCCCC--CCceee----ec-cCCCCCCCCCCCCChhhHHHHH---------------
Q 005093 601 ----------------------VGTTDI--PDWCYV----ES-YGSKGKDSFTESPSVEDLTRFH--------------- 636 (715)
Q Consensus 601 ----------------------~~~~~~--~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~--------------- 636 (715)
...... ...... .. ....................+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (555)
T 3i28_A 387 FQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWY 466 (555)
T ss_dssp HHSTTHHHHHHHHCHHHHHHHHSCCTTSCCCCCSSHHHHTSSSTTSCSSCCCCTTCCHHHHHHHHHHHTTTTTHHHHHTT
T ss_pred hhCCCchHHHHhhhHHHHHHHHhccccccccccccccccccccccCccccccccccCHHHHHHHHHHHhcccchhHHHHH
Confidence 000000 000000 00 0000000000000111111110
Q ss_pred -------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHH
Q 005093 637 -------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 709 (715)
Q Consensus 637 -------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~w 709 (715)
..+....+.++++|+|+++|++|..+|++.+..+.+.+. .+++++++++||.... +...++.+.|.+|
T Consensus 467 ~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~f 541 (555)
T 3i28_A 467 RNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIP----HLKRGHIEDCGHWTQM-DKPTEVNQILIKW 541 (555)
T ss_dssp SCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTCT----TCEEEEETTCCSCHHH-HSHHHHHHHHHHH
T ss_pred HhccccchhhccccccccccCEEEEEeCCCCCcCHHHHHHHHhhCC----CceEEEeCCCCCCcch-hCHHHHHHHHHHH
Confidence 012223456889999999999999999888777666553 4789999999997654 3345788899999
Q ss_pred HHHhc
Q 005093 710 FKKYC 714 (715)
Q Consensus 710 l~~~l 714 (715)
|++..
T Consensus 542 l~~~~ 546 (555)
T 3i28_A 542 LDSDA 546 (555)
T ss_dssp HHHHT
T ss_pred HHhcc
Confidence 98764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-15 Score=152.64 Aligned_cols=229 Identities=13% Similarity=0.117 Sum_probs=161.3
Q ss_pred CeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCC
Q 005093 68 PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 146 (715)
Q Consensus 68 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (715)
..++..+ .+++...+......+ ..++|||||++|++..
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~~v----------~~~~~spdg~~l~~~~------------------------------- 60 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPELF----------EAPNWSPDGKYLLLNS------------------------------- 60 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESSCC----------EEEEECTTSSEEEEEE-------------------------------
T ss_pred eeEEEEeCCCCceeeeccCCcce----------EeeEECCCCCEEEEEc-------------------------------
Confidence 3455555 566666665544343 7999999999999852
Q ss_pred cccCCcCcccCCccCceEEEEEccC-CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCce
Q 005093 147 DWEEDWGETYAGKRQPSLFVININS-GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 225 (715)
Q Consensus 147 ~~~~~~g~~~~~~~~~~l~~~~~~~-g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~ 225 (715)
...|++||+++ ++...+........+..+.|||||+. |++.....+ ....
T Consensus 61 --------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~----l~~~~~~~~-----------~~~~ 111 (297)
T 2ojh_A 61 --------------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL----YAISDKVEF-----------GKSA 111 (297)
T ss_dssp --------------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE----EEEEECTTT-----------SSCE
T ss_pred --------------CCeEEEEeCCCCCCceEeccccccccccceEECCCCCE----EEEEEeCCC-----------Ccce
Confidence 15699999999 88877731122245678999999998 888763221 2357
Q ss_pred EEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 226 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
||.+++ .++..+.++.... ...+.|||||++|+|....+ ....||.+++.++..
T Consensus 112 l~~~~~-----------------~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~--------~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 112 IYLLPS-----------------TGGTPRLMTKNLP-SYWHGWSPDGKSFTYCGIRD--------QVFDIYSMDIDSGVE 165 (297)
T ss_dssp EEEEET-----------------TCCCCEECCSSSS-EEEEEECTTSSEEEEEEEET--------TEEEEEEEETTTCCE
T ss_pred EEEEEC-----------------CCCceEEeecCCC-ccceEECCCCCEEEEEECCC--------CceEEEEEECCCCcc
Confidence 999997 6677777765544 67789999999999887653 134688888876554
Q ss_pred CCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEe
Q 005093 306 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLT 385 (715)
Q Consensus 306 ~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s 385 (715)
+.+.... ..+..+.|+|||+.+++.....+...||.+++.++....+...........|+
T Consensus 166 ~~~~~~~--------------------~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s 225 (297)
T 2ojh_A 166 TRLTHGE--------------------GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPS 225 (297)
T ss_dssp EECCCSS--------------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEEC
T ss_pred eEcccCC--------------------CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEEC
Confidence 4333211 12345679999998888877677889999999888888887655444456789
Q ss_pred ecCCEEEEEEeCCC-------CCCeEEEEeeccc
Q 005093 386 LDGDNIIAVSSSPV-------DVPQVKYGYFVDK 412 (715)
Q Consensus 386 ~~~~~l~~~~~~~~-------~p~~l~~~~~~~~ 412 (715)
++++.|++...... ....|++.++.++
T Consensus 226 ~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 99999888776543 2256888886544
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=160.00 Aligned_cols=231 Identities=15% Similarity=0.231 Sum_probs=132.0
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
...+|..++...+-+.+ +.|.||++||.+.. ...|...+..|++ ||.|+++|+|| +|.+... ....
T Consensus 11 ~~~~g~~l~~~~~g~~~-----~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~---~~~~ 76 (285)
T 3bwx_A 11 TSSDGLRLHFRAYEGDI-----SRPPVLCLPGLTRN--ARDFEDLATRLAG-DWRVLCPEMRG---RGDSDYA---KDPM 76 (285)
T ss_dssp ECTTSCEEEEEEECBCT-----TSCCEEEECCTTCC--GGGGHHHHHHHBB-TBCEEEECCTT---BTTSCCC---SSGG
T ss_pred ecCCCceEEEEEcCCCC-----CCCcEEEECCCCcc--hhhHHHHHHHhhc-CCEEEeecCCC---CCCCCCC---CCcc
Confidence 34577888876664431 25679999996654 5678888888876 99999999999 5554321 1111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCC--cchhhh------hccCC-CCCC
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP--LCNLAL------MVGTT-DIPD 608 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~--~~~~~~------~~~~~-~~~~ 608 (715)
...+++..+.+..+++. ...+++.|+||||||.+++.+|.++|++++++|+.++ ...... ..... ....
T Consensus 77 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (285)
T 3bwx_A 77 TYQPMQYLQDLEALLAQ--EGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGPEVSPEGLERIRGYVGQGRNFET 154 (285)
T ss_dssp GCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHTTCCCEESS
T ss_pred ccCHHHHHHHHHHHHHh--cCCCceEEEEeCHHHHHHHHHHHhCchheeEEEEecCCcccCcchhHHHHHHhcCCccccc
Confidence 22344444333333333 1346899999999999999999999999999998653 211100 00000 0000
Q ss_pred ceee-eccCCCCCCCCCCCCChhhHHH-------------------------HHh-------cCchhhccCC-CCcEEEE
Q 005093 609 WCYV-ESYGSKGKDSFTESPSVEDLTR-------------------------FHS-------KSPISHISKV-KTPTIFL 654 (715)
Q Consensus 609 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~-------~sp~~~~~~i-~~P~Lii 654 (715)
|... ..+.......+.... ...... +.. .+....+.++ ++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii 233 (285)
T 3bwx_A 155 WMHAARALQESSGDVYPDWD-ITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPVGATPQVDMWPLFDALATRPLLVL 233 (285)
T ss_dssp HHHHHHHHHHHHTTTSTTCC-HHHHHHHHHHHEEECTTSCEEESBCGGGGCCTTSCTTCCCSSCCHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHhhhhcccccC-hHHHHHHHHhhheeCCCCceeeccCHHHHHHHhhhhhccccchhhHHHHHccCCCeEEE
Confidence 0000 000000000000000 000000 000 0000112233 6999999
Q ss_pred eeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 655 LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 655 ~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+|++|..++++.+..+ .+. ..+++++++++||....++. . .+..|.+||++
T Consensus 234 ~G~~D~~~~~~~~~~~----~~~-~~~~~~~i~~~gH~~~~e~p-~-~~~~i~~fl~~ 284 (285)
T 3bwx_A 234 RGETSDILSAQTAAKM----ASR-PGVELVTLPRIGHAPTLDEP-E-SIAAIGRLLER 284 (285)
T ss_dssp EETTCSSSCHHHHHHH----HTS-TTEEEEEETTCCSCCCSCSH-H-HHHHHHHHHTT
T ss_pred EeCCCCccCHHHHHHH----HhC-CCcEEEEeCCCCccchhhCc-h-HHHHHHHHHHh
Confidence 9999999987765544 344 56899999999998665443 2 34678999864
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-16 Score=159.63 Aligned_cols=237 Identities=19% Similarity=0.267 Sum_probs=136.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..++.... + +.|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+..... .......
T Consensus 19 ~g~~l~y~~~------G--~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G---~G~S~~~~~-~~~~~~~ 84 (328)
T 2cjp_A 19 NGLNMHLAEL------G--EGPTILFIHGFPEL--WYSWRHQMVYLAERGYRAVAPDLRG---YGDTTGAPL-NDPSKFS 84 (328)
T ss_dssp TTEEEEEEEE------C--SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTT---STTCBCCCT-TCGGGGS
T ss_pred CCcEEEEEEc------C--CCCEEEEECCCCCc--hHHHHHHHHHHHHCCcEEEEECCCC---CCCCCCcCc-CCccccc
Confidence 5666654432 1 24789999997654 5678888899999999999999999 555532100 1111223
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcch-------hh----hhccC------
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-------LA----LMVGT------ 603 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~-------~~----~~~~~------ 603 (715)
++++.+.+..+++.-..+.+++.|+||||||.+++.+|.++|++++++|++++... .. .....
T Consensus 85 ~~~~a~dl~~~l~~l~~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (328)
T 2cjp_A 85 ILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVHFSKRNPKMNVVEGLKAIYGEDHYISR 164 (328)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCSSCCHHHHHHHHHCTTBHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccCCCcccccCChHHHHHhhcccchHHHh
Confidence 44444444333333111257899999999999999999999999999999875421 00 00000
Q ss_pred CCCCCc--------e---ee-eccC---C-----CCCCCCCCC-------C---ChhhHHHHH----------------h
Q 005093 604 TDIPDW--------C---YV-ESYG---S-----KGKDSFTES-------P---SVEDLTRFH----------------S 637 (715)
Q Consensus 604 ~~~~~~--------~---~~-~~~~---~-----~~~~~~~~~-------~---~~~~~~~~~----------------~ 637 (715)
...+.. . .. ..+. . .....+... + .....+.+. .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (328)
T 2cjp_A 165 FQVPGEIEAEFAPIGAKSVLKKILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRA 244 (328)
T ss_dssp TSSTTHHHHHHHHHCHHHHHHHHHTCCCSSCCBCCTTCTTTTSCCCCGGGGTTSCHHHHHHHHHHHHHHCSHHHHHHHHT
T ss_pred hhCCCcHHHHhhccCHHHHHHHHhcccCCCcccccccchhhhcccccccCcCCCCHHHHHHHHHHhcccCCcchHHHHHh
Confidence 000000 0 00 0000 0 000000000 0 011111100 0
Q ss_pred cC------chhhccCCCCcEEEEeeCCCCcCCchHHHHHH--HHHHHcCCcE-EEEEeCCCCccCCCCCchHHHHHHHHH
Q 005093 638 KS------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYA--RALREKGVET-KVIVFPNDVHGIERPQSDFESFLNIGL 708 (715)
Q Consensus 638 ~s------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~--~~l~~~g~~~-~~~~~~~~~H~~~~~~~~~~~~~~i~~ 708 (715)
.. ....+.++++|+|+++|++|..+|+..+.++. +.+.+.-... ++++++++||....+. ..++.+.|.+
T Consensus 245 ~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~gH~~~~e~-p~~~~~~i~~ 323 (328)
T 2cjp_A 245 LPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVSQER-PHEISKHIYD 323 (328)
T ss_dssp HHHHHHHTGGGTTCCCCSCEEEEEETTCGGGGSTTHHHHHHHSHHHHHSTTBCCCEEETTCCSCHHHHS-HHHHHHHHHH
T ss_pred cccchhhhhhccCCccCCCEEEEEeCCcccccCcchhhhhhhhhHHHHhcCCeeEEEcCCCCCCcchhC-HHHHHHHHHH
Confidence 00 00134678999999999999999876543333 3444443445 7889999999866443 5678889999
Q ss_pred HHHH
Q 005093 709 WFKK 712 (715)
Q Consensus 709 wl~~ 712 (715)
||++
T Consensus 324 fl~~ 327 (328)
T 2cjp_A 324 FIQK 327 (328)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 9864
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-17 Score=161.55 Aligned_cols=213 Identities=16% Similarity=0.192 Sum_probs=131.6
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.. ...|...+..|++. |.|+++|+|| +|.+.... .. ...++++.+.+..+++. ...+
T Consensus 16 g~~vvllHG~~~~--~~~~~~~~~~L~~~-~~vi~~Dl~G---~G~S~~~~---~~-~~~~~~~~~dl~~~l~~--l~~~ 83 (269)
T 2xmz_A 16 NQVLVFLHGFLSD--SRTYHNHIEKFTDN-YHVITIDLPG---HGEDQSSM---DE-TWNFDYITTLLDRILDK--YKDK 83 (269)
T ss_dssp SEEEEEECCTTCC--GGGGTTTHHHHHTT-SEEEEECCTT---STTCCCCT---TS-CCCHHHHHHHHHHHHGG--GTTS
T ss_pred CCeEEEEcCCCCc--HHHHHHHHHHHhhc-CeEEEecCCC---CCCCCCCC---CC-ccCHHHHHHHHHHHHHH--cCCC
Confidence 3569999997655 45677778888765 9999999999 55553211 10 23466666666666655 3457
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc-------CCC----C--CCce-eeeccCCCCCCCCCC-
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTD----I--PDWC-YVESYGSKGKDSFTE- 625 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-------~~~----~--~~~~-~~~~~~~~~~~~~~~- 625 (715)
++.|+||||||.+++.+|.++|++++++|++++......... ... . .... +...+... ..+..
T Consensus 84 ~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 161 (269)
T 2xmz_A 84 SITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKL--PLFQSQ 161 (269)
T ss_dssp EEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTS--GGGGGG
T ss_pred cEEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHHHHhC--cccccc
Confidence 899999999999999999999999999999987543210000 000 0 0000 00000000 00000
Q ss_pred --CC--------------Chhh-HHHHH------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEE
Q 005093 626 --SP--------------SVED-LTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 682 (715)
Q Consensus 626 --~~--------------~~~~-~~~~~------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (715)
.. .... ...+. ..+....+.++++|+|+++|++|..++..... +.+. -..++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~-~~~~----~~~~~ 236 (269)
T 2xmz_A 162 LELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFVQIAKK-MANL----IPNSK 236 (269)
T ss_dssp GGSCHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGGCCSCEEEEEETTCHHHHHHHHH-HHHH----STTEE
T ss_pred ccCCHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHhcCCCEEEEEeCCCcccCHHHHH-HHhh----CCCcE
Confidence 00 0000 00010 01112356788999999999999998765532 4333 34589
Q ss_pred EEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 683 VIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 683 ~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+++++++||....+ ...++.+.|.+|+++.
T Consensus 237 ~~~i~~~gH~~~~e-~p~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 237 CKLISATGHTIHVE-DSDEFDTMILGFLKEE 266 (269)
T ss_dssp EEEETTCCSCHHHH-SHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCChhhc-CHHHHHHHHHHHHHHh
Confidence 99999999987654 3457888999999764
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-17 Score=164.33 Aligned_cols=229 Identities=15% Similarity=0.191 Sum_probs=138.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..++....- .++.|.||++||.+.+ ...|...+..|++. |.|+++|+|| ||.+.. + .....
T Consensus 15 ~g~~l~y~~~G------~g~~~pvvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~---~--~~~~~ 77 (316)
T 3afi_E 15 LGSSMAYRETG------AQDAPVVLFLHGNPTS--SHIWRNILPLVSPV-AHCIAPDLIG---FGQSGK---P--DIAYR 77 (316)
T ss_dssp TTEEEEEEEES------CTTSCEEEEECCTTCC--GGGGTTTHHHHTTT-SEEEEECCTT---STTSCC---C--SSCCC
T ss_pred CCEEEEEEEeC------CCCCCeEEEECCCCCc--hHHHHHHHHHHhhC-CEEEEECCCC---CCCCCC---C--CCCCC
Confidence 46666544331 1233589999997655 55788888888654 9999999999 666532 1 11234
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcch---hhhhc----------------
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN---LALMV---------------- 601 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~---~~~~~---------------- 601 (715)
+++..+.+..+++.- ..+++.|+||||||.+++.+|.++|++++++|++++... +....
T Consensus 78 ~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (316)
T 3afi_E 78 FFDHVRYLDAFIEQR--GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHTEVAEEQDHAEAARA 155 (316)
T ss_dssp HHHHHHHHHHHHHHT--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEECCCBSSGGGTTCCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccCCCcchhhhccchhhccccccchhHHH
Confidence 666666666666652 347899999999999999999999999999999876321 10000
Q ss_pred --cCCCCCCce--ee---eccCCCCCCC-CCCCCChhhHHHH----------------H-hcC--------------chh
Q 005093 602 --GTTDIPDWC--YV---ESYGSKGKDS-FTESPSVEDLTRF----------------H-SKS--------------PIS 642 (715)
Q Consensus 602 --~~~~~~~~~--~~---~~~~~~~~~~-~~~~~~~~~~~~~----------------~-~~s--------------p~~ 642 (715)
.....+... .. ..+....... .......+..+.+ . ... ...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (316)
T 3afi_E 156 VFRKFRTPGEGEAMILEANAFVERVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIAGEPADVYEALQSAHA 235 (316)
T ss_dssp HHHHHTSTTHHHHHHTTSCHHHHTTTGGGCSSCCCHHHHHHHHTTCCSTGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHH
T ss_pred HHHHhcCCchhhHHHhccchHHHHhcccccCCCCCHHHHHHHHhhcCCccchhHHHHHHHhccccccchhhhhHHHHHHH
Confidence 000000000 00 0000000000 0000000000000 0 000 011
Q ss_pred hccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 643 HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 643 ~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
.+.++++|+|+++|++|..+|++.+..+.+.+ ...++++++++||....+ ...++.+.|.+||++.
T Consensus 236 ~l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~----p~~~~~~i~~~GH~~~~e-~p~~~~~~i~~fl~~~ 301 (316)
T 3afi_E 236 ALAASSYPKLLFTGEPGALVSPEFAERFAASL----TRCALIRLGAGLHYLQED-HADAIGRSVAGWIAGI 301 (316)
T ss_dssp HHHHCCSCEEEEEEEECSSSCHHHHHHHHHHS----SSEEEEEEEEECSCHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhhccCCCeEEEecCCCCccCHHHHHHHHHhC----CCCeEEEcCCCCCCchhh-CHHHHHHHHHHHHhhc
Confidence 23468999999999999999987776666555 347899999999986543 4557888999999764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-16 Score=183.64 Aligned_cols=156 Identities=10% Similarity=0.010 Sum_probs=115.7
Q ss_pred ccceEEEe-cCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCc-c
Q 005093 185 SVGQVVWA-PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-S 262 (715)
Q Consensus 185 ~~~~~~~s-pdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-~ 262 (715)
.+..++|| |||+. |++... ..|+++++ .++....++.... .
T Consensus 297 ~v~~~~~S~pdG~~----la~~~~----------------~~i~~~~~-----------------~~~~~~~~~~~~~~~ 339 (1045)
T 1k32_A 297 SKFAEDFSPLDGDL----IAFVSR----------------GQAFIQDV-----------------SGTYVLKVPEPLRIR 339 (1045)
T ss_dssp GGGEEEEEECGGGC----EEEEET----------------TEEEEECT-----------------TSSBEEECSCCSCEE
T ss_pred ccceeeecCCCCCE----EEEEEc----------------CEEEEEcC-----------------CCCceEEccCCCcce
Confidence 46789999 99999 998761 26899997 6777777877766 7
Q ss_pred ccceeEcCCCCeEEEEecCCCCCCCCccccceeE-eeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccc
Q 005093 263 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH-RIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~-~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 341 (715)
...++|| ||+.|+|.+.+ .+|| ++++.++..+.++... ..+..++|+
T Consensus 340 ~~~~~~s-dg~~l~~~s~~-----------~~l~~~~d~~~~~~~~l~~~~--------------------~~~~~~~~S 387 (1045)
T 1k32_A 340 YVRRGGD-TKVAFIHGTRE-----------GDFLGIYDYRTGKAEKFEENL--------------------GNVFAMGVD 387 (1045)
T ss_dssp EEEECSS-SEEEEEEEETT-----------EEEEEEEETTTCCEEECCCCC--------------------CSEEEEEEC
T ss_pred EEeeeEc-CCCeEEEEECC-----------CceEEEEECCCCCceEecCCc--------------------cceeeeEEC
Confidence 8899999 99999998862 3688 8998876654444111 023456799
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-CCCCceeEEEeecCCEEEEEEeCC------CCCCeEEEEeeccc
Q 005093 342 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSP------VDVPQVKYGYFVDK 412 (715)
Q Consensus 342 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~~~~~l~~~~~~~------~~p~~l~~~~~~~~ 412 (715)
|||+.|++.... ..|+.+|+++|+.+.+.. ....+....||+||+.|++..... ..+..|++.++.++
T Consensus 388 pDG~~la~~~~~---~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 388 RNGKFAVVANDR---FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp TTSSEEEEEETT---SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred CCCCEEEEECCC---CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 999988776542 389999999999988873 333445578999999998877643 44567888887644
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=165.00 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=88.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..++....-|+ .+..|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+.. +.......
T Consensus 11 ~g~~l~y~~~G~~----~~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~vi~~d~~g---~g~s~~---~~~~~~~~ 78 (356)
T 2e3j_A 11 RGTRIHAVADSPP----DQQGPLVVLLHGFPES--WYSWRHQIPALAGAGYRVVAIDQRG---YGRSSK---YRVQKAYR 78 (356)
T ss_dssp TTEEEEEEEECCT----TCCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCC---CCSGGGGS
T ss_pred CCeEEEEEEecCC----CCCCCEEEEECCCCCc--HHHHHHHHHHHHHcCCEEEEEcCCC---CCCCCC---CCcccccC
Confidence 6778877666553 2346899999997654 4567778888999999999999999 554421 11111223
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
..++.+.+..+++. ++.++++|+|||+||.+++.++.++|++++++|++++..
T Consensus 79 ~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 79 IKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp HHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 55555555555544 345789999999999999999999999999999988654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.4e-16 Score=175.81 Aligned_cols=270 Identities=9% Similarity=0.103 Sum_probs=168.4
Q ss_pred eeCCCCceEEEEecCCCC-CCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCcc
Q 005093 49 VPSPSGSKLLVVRNPENE-SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 126 (715)
Q Consensus 49 ~~Spdg~~la~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 126 (715)
.++|||++++|+.+.++. ...+|.+. .+++.+.+++......+. ...+..++|||||++|||.....
T Consensus 78 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~---~~~~~~~~~SPDg~~la~~~~~~-------- 146 (710)
T 2xdw_A 78 CHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDG---TVALRGYAFSEDGEYFAYGLSAS-------- 146 (710)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTS---CEEEEEEEECTTSSEEEEEEEET--------
T ss_pred CCEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCC---CEEEEEEEECCCCCEEEEEEcCC--------
Confidence 345999999999876532 34678777 566666666542211000 01236899999999999987653
Q ss_pred CCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEe
Q 005093 127 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 206 (715)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~ 206 (715)
|. ...+|+++|+++|+...+ +........++|||||+. |+|++
T Consensus 147 --------------------------G~-----~~~~i~v~d~~tg~~~~~--~~~~~~~~~~~wspDg~~----l~~~~ 189 (710)
T 2xdw_A 147 --------------------------GS-----DWVTIKFMKVDGAKELPD--VLERVKFSCMAWTHDGKG----MFYNA 189 (710)
T ss_dssp --------------------------TC-----SCEEEEEEETTTTEEEEE--EEEEECSCCEEECTTSSE----EEEEE
T ss_pred --------------------------CC-----ceEEEEEEECCCCCCCcc--cccCcccceEEEEeCCCE----EEEEE
Confidence 11 235899999999998775 222223567999999999 99987
Q ss_pred ecCccc-eeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce--ecCCC---CccccceeEcCCCCeEEEEec
Q 005093 207 WSSETR-KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV--NLTES---ISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 207 ~~~~~~-~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~lt~~---~~~~~~~~~spdg~~l~~~~~ 280 (715)
...... ..+-.....+..+||++++ .++... .+... ......+.|||||++|++.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~v~~~~l-----------------~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 190 YPQQDGKSDGTETSTNLHQKLYYHVL-----------------GTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp CCCCSSCCSSSCCCCCCCCEEEEEET-----------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred ECCccccccccccccCCCCEEEEEEC-----------------CCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 543210 0000011123457999997 554422 22222 233568999999999999987
Q ss_pred CCCCCCCCccccceeEeeecCC------CC--CCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEee
Q 005093 281 KSSVDSGAHSATDSLHRIDWPT------NG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 352 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~------~~--~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~ 352 (715)
+.. ....+||++|+.+ +. .+.++... + .....|++||+.|++.+.
T Consensus 253 ~~~------~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-----------~----------~~~~~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 253 EGC------DPVNRLWYCDLQQESNGITGILKWVKLIDNF-----------E----------GEYDYVTNEGTVFTFKTN 305 (710)
T ss_dssp CSS------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-----------S----------SCEEEEEEETTEEEEEEC
T ss_pred ccC------CCccEEEEEECcccccccCCccceEEeeCCC-----------C----------cEEEEEeccCCEEEEEEC
Confidence 531 1146799999876 32 22222111 0 112258899999999887
Q ss_pred eCC-eeEEEEEECCCCc---EEEecCCCC--CceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 353 WGS-SQVIISVNVSSGE---LLRITPAES--NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 353 ~~~-~~~l~~~d~~tg~---~~~l~~~~~--~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
..+ ..+|+.+|++++. .+.++.... .+....++ +++.++++.... .-.+|+++++.++
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~-g~~~l~~~~~~~g 369 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD-VKNTLQLHDLATG 369 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEET-TEEEEEEEETTTC
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEEC-CEEEEEEEECCCC
Confidence 543 6789999998874 366665543 22223343 467777666543 3456787776433
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-17 Score=171.65 Aligned_cols=222 Identities=11% Similarity=0.106 Sum_probs=131.6
Q ss_pred CCCcEEEEEcCCCCCCCC---ccch-----------HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC--C---CCCC-c
Q 005093 479 SCDPLIVVLHGGPHSVSL---SSYS-----------KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL--P---GKVG-S 538 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~---~~~~-----------~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~--~---~~~~-~ 538 (715)
++.|+||++||++..... ..|. ..++.|+++||.|+++|+|| +|.+..... . ..+. .
T Consensus 48 ~~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G---~G~s~~~~~~~~~~~~~~~~~ 124 (354)
T 2rau_A 48 GGNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRT---HYVPPFLKDRQLSFTANWGWS 124 (354)
T ss_dssp CCEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGG---GGCCTTCCGGGGGGGTTCSHH
T ss_pred CCCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCC---CCCCCcccccccccccCCcHH
Confidence 356899999997655210 0222 67888999999999999999 444321100 0 0111 1
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-CCceeEEEecCCcchhhhhccCC---CCC-------
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTT---DIP------- 607 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~~~~~~~~~~---~~~------- 607 (715)
..++|+.++++++.++ .+.++++++|||+||.+++.++.++ |++++++|++++........... ...
T Consensus 125 ~~~~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
T 2rau_A 125 TWISDIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEA 202 (354)
T ss_dssp HHHHHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESCSCBCTTCC--CCCCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEecccccccCcccchhhhhhhhHHHhhh
Confidence 2257888888888776 3457899999999999999999998 99999999986542210000000 000
Q ss_pred ----------Cce----eeeccCCC-----------------------CCCCCC-CCCChhhH-HHHH------------
Q 005093 608 ----------DWC----YVESYGSK-----------------------GKDSFT-ESPSVEDL-TRFH------------ 636 (715)
Q Consensus 608 ----------~~~----~~~~~~~~-----------------------~~~~~~-~~~~~~~~-~~~~------------ 636 (715)
.+. ....+... ....+. ........ ..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (354)
T 2rau_A 203 KGIYVIPSRGGPNNPIWSYALANPDMPSPDPKYKSISDFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSL 282 (354)
T ss_dssp HTCCEEECSSSTTCTHHHHHHHSTTSCCSSTTSSSHHHHHHHHHHHTTSCCTTSTTCCCHHHHHHHHHTSCSEEEHHHHH
T ss_pred hcccccCCCchhhhHHHHHhccccccCccccchhhHHHHHHHhhhccccCCcccCCCccHHHHHHHHhhhcccccccccc
Confidence 000 00000000 000000 00000111 1111
Q ss_pred hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCC--CCchHHHHHHHHHHHHHh
Q 005093 637 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER--PQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 637 ~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~--~~~~~~~~~~i~~wl~~~ 713 (715)
..+....+.++++|+|+++|++|.++|.. +. .+ ....++++++++||.... ++...++.+.+.+||+++
T Consensus 283 ~~~~~~~l~~i~~P~Lii~G~~D~~~p~~-~~----~l---~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 353 (354)
T 2rau_A 283 ERDLKFDYEGILVPTIAFVSERFGIQIFD-SK----IL---PSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQ 353 (354)
T ss_dssp TTTCCCCCTTCCCCEEEEEETTTHHHHBC-GG----GS---CTTCEEEEETTCCGGGGTSSTTHHHHTHHHHHHHHHHH
T ss_pred CcccccccccCCCCEEEEecCCCCCCccc-hh----hh---ccCceEEEcCCCCCchhhcCCCcHHHHHHHHHHHHHhc
Confidence 11223345688999999999999876632 21 22 235789999999997643 344578899999999875
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=157.22 Aligned_cols=237 Identities=13% Similarity=0.063 Sum_probs=143.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCC--CC
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--KV 536 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~--~~ 536 (715)
+.++..+ .|+.+ + |+||++||++.......|.. ..+.+++.|+.|+++|.++...+.. +...... ..
T Consensus 17 ~~~~~v~--~~p~~---~--~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~~~~-~~~~~~~~g~~ 88 (280)
T 1dqz_A 17 GRDIKVQ--FQGGG---P--HAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTD-WYQPSQSNGQN 88 (280)
T ss_dssp TEEEEEE--EECCS---S--SEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCTTSB-CSSSCTTTTCC
T ss_pred CceeEEE--EcCCC---C--CEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCccccC-CCCCCcccccc
Confidence 4556544 45433 2 58999999753112334443 2356778899999999876433321 1000000 00
Q ss_pred CccchhhH--HHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeec
Q 005093 537 GSQDVNDV--LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 614 (715)
Q Consensus 537 ~~~~~~d~--~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (715)
......+. .+++.++.++..+++++++|+|+||||++++.++.++|++|+++++++|..+............ ....
T Consensus 89 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~~--~~~~ 166 (280)
T 1dqz_A 89 YTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGL--AMND 166 (280)
T ss_dssp SCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTHHHHHHH--HHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccCcchhhhHHH--Hhhh
Confidence 11223332 2344455443346677999999999999999999999999999999999875432100000000 0000
Q ss_pred cCCCCCCCCCCCCChhhHHHHHhcCchhhccCC---CCcEEEEeeCCCC--------------cCCchHHHHHHHHHHHc
Q 005093 615 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDL--------------RVPVSNGLQYARALREK 677 (715)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~--------------~v~~~~~~~~~~~l~~~ 677 (715)
........+.+.+. ...+...+|...+.++ .+|+++.+|+.|. .++..++++++++|+++
T Consensus 167 ~~~~~~~~~~g~~~---~~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~ 243 (280)
T 1dqz_A 167 SGGYNANSMWGPSS---DPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAAD 243 (280)
T ss_dssp TTSCCHHHHHCSTT---SHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcCHHHhcCCCC---chhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccchhhHHHHHHHHHHHHHHHHHhC
Confidence 00000000001111 1345566776555544 5899999999997 56778899999999999
Q ss_pred C-CcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 678 G-VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 678 g-~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
| .++++.++++++|.+.. ....+...+.||.+.|
T Consensus 244 g~~~~~~~~~~~g~H~~~~---w~~~l~~~l~~l~~~l 278 (280)
T 1dqz_A 244 GGRNGVFNFPPNGTHSWPY---WNEQLVAMKADIQHVL 278 (280)
T ss_dssp TCCSEEEECCSCCCSSHHH---HHHHHHHTHHHHHHHH
T ss_pred CCCceEEEecCCCccChHH---HHHHHHHHHHHHHHHh
Confidence 9 99999999888997632 2345567777877655
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=157.44 Aligned_cols=218 Identities=14% Similarity=0.062 Sum_probs=131.1
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+.... .....+++..+.+..+++.-. ..+
T Consensus 3 ~~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G---~G~S~~~~----~~~~~~~~~a~dl~~~l~~l~-~~~ 72 (257)
T 3c6x_A 3 FAHFVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAA---SGVDPRQI----EEIGSFDEYSEPLLTFLEALP-PGE 72 (257)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTCSCCG----GGCCSHHHHTHHHHHHHHTSC-TTC
T ss_pred CCcEEEEcCCccC--cCCHHHHHHHHHhCCCEEEEeCCCC---CCCCCCCc----ccccCHHHHHHHHHHHHHhcc-ccC
Confidence 3679999996644 5568888999999999999999999 55542110 011235555555555555421 236
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchh-----h----hhcc-CCCC-CCce-eee---------ccCCCC
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-----A----LMVG-TTDI-PDWC-YVE---------SYGSKG 619 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~-----~----~~~~-~~~~-~~~~-~~~---------~~~~~~ 619 (715)
++.|+||||||.+++.++.++|++++++|++++.... . .... .... ..+. ... ......
T Consensus 73 ~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (257)
T 3c6x_A 73 KVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTL 152 (257)
T ss_dssp CEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHH
T ss_pred CeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCCCccccccccHHH
Confidence 8999999999999999999999999999988764210 0 0000 0000 0000 000 000000
Q ss_pred C-CCCCCCCChhhHHHHH-hcCc-------------hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEE
Q 005093 620 K-DSFTESPSVEDLTRFH-SKSP-------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 684 (715)
Q Consensus 620 ~-~~~~~~~~~~~~~~~~-~~sp-------------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (715)
. ..+............. ...+ .......++|+|+++|++|..+|++.++.+.+.+. ..+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~~----~~~~~ 228 (257)
T 3c6x_A 153 LRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYK----PDKVY 228 (257)
T ss_dssp HHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSC----CSEEE
T ss_pred HHHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCcccEEEEEeCCCcccCHHHHHHHHHHCC----CCeEE
Confidence 0 0000001111111110 0001 00001125899999999999999888777766653 46899
Q ss_pred EeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 685 VFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 685 ~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+++++||....+. ..++.+.+.+|++++
T Consensus 229 ~i~~~gH~~~~e~-P~~~~~~l~~f~~~~ 256 (257)
T 3c6x_A 229 KVEGGDHKLQLTK-TKEIAEILQEVADTY 256 (257)
T ss_dssp ECCSCCSCHHHHS-HHHHHHHHHHHHHHC
T ss_pred EeCCCCCCcccCC-HHHHHHHHHHHHHhc
Confidence 9999999876443 457888899998764
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-16 Score=157.68 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=79.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..++....-+ ...|.||++||++.......+ ...+...||.|+++|+|| +|.+... .......
T Consensus 23 ~g~~l~~~~~g~------~~g~~vvllHG~~~~~~~~~~---~~~~~~~~~~vi~~D~~G---~G~S~~~---~~~~~~~ 87 (317)
T 1wm1_A 23 DGHRIYWELSGN------PNGKPAVFIHGGPGGGISPHH---RQLFDPERYKVLLFDQRG---CGRSRPH---ASLDNNT 87 (317)
T ss_dssp SSCEEEEEEEEC------TTSEEEEEECCTTTCCCCGGG---GGGSCTTTEEEEEECCTT---STTCBST---TCCTTCS
T ss_pred CCcEEEEEEcCC------CCCCcEEEECCCCCcccchhh---hhhccccCCeEEEECCCC---CCCCCCC---ccccccc
Confidence 566665433322 134669999997654322222 233445799999999999 6655311 1111234
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
..++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|++++..
T Consensus 88 ~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 140 (317)
T 1wm1_A 88 TWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFT 140 (317)
T ss_dssp HHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccCC
Confidence 55666666666665 345789999999999999999999999999999987643
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-16 Score=144.48 Aligned_cols=169 Identities=16% Similarity=0.102 Sum_probs=123.4
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCc---EEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY---SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~---~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
.|.||++||.+.. ...|...+..|+++|| .|+++|++|.+. +.. ...+++.+.+..+.+. .
T Consensus 3 ~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~~~~v~~~d~~g~g~---s~~---------~~~~~~~~~~~~~~~~--~ 66 (181)
T 1isp_A 3 HNPVVMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWDKTG---TNY---------NNGPVLSRFVQKVLDE--T 66 (181)
T ss_dssp CCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSCTTC---CHH---------HHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCcCCC--HhHHHHHHHHHHHcCCCCccEEEEecCCCCC---chh---------hhHHHHHHHHHHHHHH--c
Confidence 5779999996654 5578888899999998 699999999433 221 1355666666666655 2
Q ss_pred CCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHH
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 635 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (715)
+.+++.++||||||.+++.++.++ |++++++|+++|....... .. + +.
T Consensus 67 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~------------~~--------~---~~------- 116 (181)
T 1isp_A 67 GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG------------KA--------L---PG------- 116 (181)
T ss_dssp CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS------------BC--------C---CC-------
T ss_pred CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccc------------cc--------C---CC-------
Confidence 457899999999999999999987 8899999999987543210 00 0 00
Q ss_pred HhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 636 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 636 ~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
.. ...++|+|+++|++|.++|++.+. -...+++++++++|.+.... . ++.+.+.+||++.
T Consensus 117 --~~-----~~~~~p~l~i~G~~D~~v~~~~~~---------~~~~~~~~~~~~gH~~~~~~-~-~~~~~i~~fl~~~ 176 (181)
T 1isp_A 117 --TD-----PNQKILYTSIYSSADMIVMNYLSR---------LDGARNVQIHGVGHIGLLYS-S-QVNSLIKEGLNGG 176 (181)
T ss_dssp --SC-----TTCCCEEEEEEETTCSSSCHHHHC---------CBTSEEEEESSCCTGGGGGC-H-HHHHHHHHHHTTT
T ss_pred --CC-----CccCCcEEEEecCCCccccccccc---------CCCCcceeeccCchHhhccC-H-HHHHHHHHHHhcc
Confidence 00 123479999999999999977431 23468899999999876554 3 6889999999763
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=144.00 Aligned_cols=171 Identities=12% Similarity=0.129 Sum_probs=121.8
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
+.|.||++||.+.... ..|...+..+...+ +.++++| ++ ....+++.+.+..+.+.. +
T Consensus 16 ~~~~vv~~HG~~~~~~-~~~~~~~~~~~~~~---~~v~~~~---~~------------~~~~~~~~~~~~~~~~~~--~- 73 (191)
T 3bdv_A 16 QQLTMVLVPGLRDSDD-EHWQSHWERRFPHW---QRIRQRE---WY------------QADLDRWVLAIRRELSVC--T- 73 (191)
T ss_dssp TTCEEEEECCTTCCCT-TSHHHHHHHHCTTS---EECCCSC---CS------------SCCHHHHHHHHHHHHHTC--S-
T ss_pred CCceEEEECCCCCCch-hhHHHHHHHhcCCe---EEEeccC---CC------------CcCHHHHHHHHHHHHHhc--C-
Confidence 4688999999765431 34544444433344 4456666 21 123566666666666552 3
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcC
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 639 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 639 (715)
++++++|||+||.+++.++.++|++++++|+++|........ +.
T Consensus 74 ~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~-------------------------~~----------- 117 (191)
T 3bdv_A 74 QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFEI-------------------------DD----------- 117 (191)
T ss_dssp SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGTC-------------------------TT-----------
T ss_pred CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccccC-------------------------cc-----------
Confidence 789999999999999999999999999999999976532100 00
Q ss_pred chhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCC--CchHHHHHHHHHHHHHhc
Q 005093 640 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP--QSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 640 p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~wl~~~l 714 (715)
...+.++++|+|+++|++|..+|++.+..+.+.+ .++++++++++|..... ....+..+.+.+|+++..
T Consensus 118 -~~~~~~~~~P~lii~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~~ 188 (191)
T 3bdv_A 118 -RIQASPLSVPTLTFASHNDPLMSFTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEFSEILI 188 (191)
T ss_dssp -TSCSSCCSSCEEEEECSSBTTBCHHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHHHHTTC
T ss_pred -ccccccCCCCEEEEecCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHHHHHhc
Confidence 0335678899999999999999999988888776 37899999999987542 133456688999998653
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-17 Score=163.34 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=130.1
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
+.|+||++||.+.. ...|...+..|.++||.|+++|+|| +|.+... .........+++.+.+..+++. .+.
T Consensus 23 ~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G---~G~s~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~ 93 (279)
T 4g9e_A 23 EGAPLLMIHGNSSS--GAIFAPQLEGEIGKKWRVIAPDLPG---HGKSTDA--IDPDRSYSMEGYADAMTEVMQQ--LGI 93 (279)
T ss_dssp CEEEEEEECCTTCC--GGGGHHHHHSHHHHHEEEEEECCTT---STTSCCC--SCHHHHSSHHHHHHHHHHHHHH--HTC
T ss_pred CCCeEEEECCCCCc--hhHHHHHHhHHHhcCCeEEeecCCC---CCCCCCC--CCcccCCCHHHHHHHHHHHHHH--hCC
Confidence 56889999997654 5567788888778899999999999 4443210 0011122356666666555554 244
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc--CCCCCCceee--eccCCC----CC-CCCCCCCChh
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG--TTDIPDWCYV--ESYGSK----GK-DSFTESPSVE 630 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~----~~-~~~~~~~~~~ 630 (715)
++++|+|||+||.+++.++.++|+ +.++|++++......... .......... ..+... .. ..+.......
T Consensus 94 ~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (279)
T 4g9e_A 94 ADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTPPVAREEVGQGFKSGPDMALAGQEIFSERDVESYARSTCGEPFEAS 172 (279)
T ss_dssp CCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESCCCCCGGGHHHHBCCSTTGGGGGCSCCCHHHHHHHHHHHHCSSCCHH
T ss_pred CceEEEEECchHHHHHHHHhhCCc-ceeEEEecCCCCCCCccchhhccchhhhhcCcccccHHHHHHHHHhhccCcccHH
Confidence 689999999999999999999998 666665554332111100 0000000000 000000 00 0000000000
Q ss_pred hHHHHH------------------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHH-HHHHHcCCcEEEEEeCCCCc
Q 005093 631 DLTRFH------------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA-RALREKGVETKVIVFPNDVH 691 (715)
Q Consensus 631 ~~~~~~------------------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~-~~l~~~g~~~~~~~~~~~~H 691 (715)
....+. ..+....+.++++|+|+++|++|..+|++.+..+. +.+ ..+++++++++||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~gH 248 (279)
T 4g9e_A 173 LLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNL----WEGKTHVIDNAGH 248 (279)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHCCSCEEEEEETTCSSBCHHHHTTCCCSSB----GGGSCEEETTCCS
T ss_pred HHHHHHhhhccchHHHHHHhhccCCchHHHHHHhcCCCEEEEEcCCCcccchHHHHHHhhccC----CCCeEEEECCCCc
Confidence 001111 11222335678999999999999999987766554 222 2467889999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHh
Q 005093 692 GIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
.... +...++.+.+.+||++.
T Consensus 249 ~~~~-~~p~~~~~~i~~fl~~~ 269 (279)
T 4g9e_A 249 APFR-EAPAEFDAYLARFIRDC 269 (279)
T ss_dssp CHHH-HSHHHHHHHHHHHHHHH
T ss_pred chHH-hCHHHHHHHHHHHHHHh
Confidence 8653 34457888999999875
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-17 Score=174.36 Aligned_cols=228 Identities=17% Similarity=0.215 Sum_probs=136.1
Q ss_pred CCcEEEEEcCCCCCCCCc-cchHHHH---HHHhCCcEEEEEcCCCCCCCchhhhhc-CCC--C---C----CccchhhHH
Q 005093 480 CDPLIVVLHGGPHSVSLS-SYSKSLA---FLSSVGYSLLIVNYRGSLGFGEEALQS-LPG--K---V----GSQDVNDVL 545 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~-~~~~~~~---~la~~G~~vi~~d~rG~~~~g~~~~~~-~~~--~---~----~~~~~~d~~ 545 (715)
..|+||++||.+...... .|...+. .|+++||.|+++|+||. ++|.+.... .+. . + ....++++.
T Consensus 108 ~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~-~~G~S~~~~~~~~~~~~~~~~~~f~~~t~~~~a 186 (444)
T 2vat_A 108 RDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGS-PFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDV 186 (444)
T ss_dssp SCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTC-SSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHH
T ss_pred CCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCC-CCCCCCCCCCCcccccccccccccccccHHHHH
Confidence 468999999976654321 1554443 46688999999999994 123322100 000 0 1 123566777
Q ss_pred HHHHHHHHcCCCCCce-EEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc-------c--CCCCCCce-----
Q 005093 546 TAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-------G--TTDIPDWC----- 610 (715)
Q Consensus 546 ~~i~~l~~~~~~d~~~-i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~-------~--~~~~~~~~----- 610 (715)
+.+..+++. ...++ ++|+||||||.+++.+|.++|++++++|++++........ . ....+.|.
T Consensus 187 ~dl~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (444)
T 2vat_A 187 RIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCRQSGWCAAWFETQRQCIYDDPKYLDGEYD 264 (444)
T ss_dssp HHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSBCCHHHHHHHHHHHHHHHHSTTSGGGTCC
T ss_pred HHHHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEeccccCCccchhHHHHHHHHHhcCCcccccccc
Confidence 666666655 23467 9999999999999999999999999999998865321000 0 00000000
Q ss_pred -------------------------eeeccCCCCCC-----------------------CCCCCC--ChhhH--------
Q 005093 611 -------------------------YVESYGSKGKD-----------------------SFTESP--SVEDL-------- 632 (715)
Q Consensus 611 -------------------------~~~~~~~~~~~-----------------------~~~~~~--~~~~~-------- 632 (715)
+...+...... .+.... ..+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
T 2vat_A 265 VDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRNISSQDAKKEINGTDSGNSHRAGQPIEAVSSYLRYQAQKF 344 (444)
T ss_dssp TTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC---------------------------CGGGHHHHHHHHHHHH
T ss_pred ccCCcccchhHHHhhhhccccChHHHHHHhccCccccccccccccccccccccccccccccccCchhhHHHHHHHHHHHH
Confidence 00000000000 000000 00000
Q ss_pred -------------HHHHhc--------CchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeC-CCC
Q 005093 633 -------------TRFHSK--------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP-NDV 690 (715)
Q Consensus 633 -------------~~~~~~--------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~-~~~ 690 (715)
..+... +....+.++++|+|+++|++|..+|++.+..+.+.+. .+++++++ ++|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~i~~PvLvi~G~~D~~~p~~~~~~l~~~~p----~~~~~~i~~~~G 420 (444)
T 2vat_A 345 AASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPALIICARSDGLYSFDEHVEMGRSIP----NSRLCVVDTNEG 420 (444)
T ss_dssp HHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEEEEECTTCSSSCHHHHHHHHHHST----TEEEEECCCSCG
T ss_pred hhccCccHHHHHHHHhhhhhccccccccHHHHhhcCCCCEEEEEeCCCCCCCHHHHHHHHHHCC----CcEEEEeCCCCC
Confidence 000011 1344567899999999999999999988877777664 47899999 899
Q ss_pred ccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 691 HGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 691 H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
|.....+ ..++.+.|.+||+++++
T Consensus 421 H~~~~e~-p~~~~~~i~~fL~~~l~ 444 (444)
T 2vat_A 421 HDFFVME-ADKVNDAVRGFLDQSLM 444 (444)
T ss_dssp GGHHHHT-HHHHHHHHHHHHTC---
T ss_pred cchHHhC-HHHHHHHHHHHHHHhcC
Confidence 9866443 55788899999987763
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-15 Score=157.30 Aligned_cols=268 Identities=12% Similarity=0.137 Sum_probs=158.6
Q ss_pred EEEEEEEeecCCCCccccccCCCccccccce-EEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccc----
Q 005093 16 KFMLSTVISKENENSVTFQWAPFPVEMTGAS-AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTV---- 89 (715)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---- 89 (715)
..||++|+.++ +..+++... .... .+.|||||++|||+...+ +++.+. .+++.++++......
T Consensus 60 ~~l~~~d~~~~--~~~~l~~~~-----~~~~~~~~~spdg~~l~~~~~~~----~l~~~d~~~~~~~~~~~~~~~~~~~g 128 (396)
T 3c5m_A 60 RNYYLLNLETQ--QAVQLTEGK-----GDNTFGGFISTDERAFFYVKNEL----NLMKVDLETLEEQVIYTVDEEWKGYG 128 (396)
T ss_dssp CEEEEEETTTT--EEEECCCSS-----CBCTTTCEECTTSSEEEEEETTT----EEEEEETTTCCEEEEEECCTTEEEEE
T ss_pred ceEEEEECCCC--cEEEeecCC-----CCccccceECCCCCEEEEEEcCC----cEEEEECCCCCcEEEEecccccCCCC
Confidence 46888766554 345554433 2222 378999999999998754 577666 555555555421110
Q ss_pred --------------------------------------ccccc--------------CCCcccceeecC-CCCeEEEEee
Q 005093 90 --------------------------------------HGSVY--------------ADGWFEGISWNS-DETLIAYVAE 116 (715)
Q Consensus 90 --------------------------------------~~~~~--------------~~~~~~~~~wSp-Dg~~la~~~~ 116 (715)
...++ ....+..+.||| ||++|+|.+.
T Consensus 129 ~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~ 208 (396)
T 3c5m_A 129 TWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHE 208 (396)
T ss_dssp EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEEC
T ss_pred CEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEec
Confidence 00000 001234567888 7888888754
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCC
Q 005093 117 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~ 196 (715)
... . .....|+++++++++.+.+........+..+.|||||+
T Consensus 209 ~~~---------------------------------~-----~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~ 250 (396)
T 3c5m_A 209 GPH---------------------------------D-----LVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGS 250 (396)
T ss_dssp SCS---------------------------------S-----SCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSS
T ss_pred CCC---------------------------------C-----CCCceEEEEECCCCceeEeeccCCCccccceEECCCCC
Confidence 210 0 01257999999998888873111123466789999999
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcC-CCCeE
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP-DGKFL 275 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~sp-dg~~l 275 (715)
. |+|.....+. ....|+++|+ .+++.+.++..... . +.||| ||+.|
T Consensus 251 ~----l~~~~~~~~~----------~~~~l~~~d~-----------------~~g~~~~l~~~~~~-~-~~~s~~dg~~l 297 (396)
T 3c5m_A 251 A----MAYVSYFKGQ----------TDRVIYKANP-----------------ETLENEEVMVMPPC-S-HLMSNFDGSLM 297 (396)
T ss_dssp C----EEEEEEETTT----------CCEEEEEECT-----------------TTCCEEEEEECCSE-E-EEEECSSSSEE
T ss_pred E----EEEEecCCCC----------ccceEEEEEC-----------------CCCCeEEeeeCCCC-C-CCccCCCCceE
Confidence 9 9998743221 1124999997 77777776644332 2 99999 99988
Q ss_pred EEEecCCCCCC---C--CccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEE
Q 005093 276 VFLSAKSSVDS---G--AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 350 (715)
Q Consensus 276 ~~~~~~~~~~~---g--~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~ 350 (715)
++.+....... + ......+||++|+.+++.+.++.....+ .... .+. ......+.|+|||+.|++.
T Consensus 298 ~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-~~~~--~~~------~~~~~~~~~s~dg~~l~~~ 368 (396)
T 3c5m_A 298 VGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSW-DVLD--GDR------QITHPHPSFTPNDDGVLFT 368 (396)
T ss_dssp EEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCC-CCBT--TBS------STTCCCCEECTTSSEEEEE
T ss_pred EEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcc-cccc--ccc------cCCCCCceEccCCCeEEEE
Confidence 77553210000 0 0013467999999887765554321100 0000 000 0013457899999999998
Q ss_pred eeeCCeeEEEEEECCCCcEEEecC
Q 005093 351 SIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 351 ~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
+...+...||.+++.+++.+.+..
T Consensus 369 s~~~~~~~l~~~~~~~~~~~~~~~ 392 (396)
T 3c5m_A 369 SDFEGVPAIYIADVPESYKHLEHH 392 (396)
T ss_dssp ECTTSSCEEEEEECCTTCC-----
T ss_pred ecCCCCceEEEEEEcccccccccc
Confidence 887777899999998887765543
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-16 Score=156.57 Aligned_cols=220 Identities=15% Similarity=0.140 Sum_probs=131.9
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+...... ......+++..+.+..+++. ++.+
T Consensus 20 ~~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~~~~-~~~~~~~~~~a~dl~~~l~~--l~~~ 90 (271)
T 1wom_A 20 KASIMFAPGFGCD--QSVWNAVAPAFEE-DHRVILFDYVG---SGHSDLRAYD-LNRYQTLDGYAQDVLDVCEA--LDLK 90 (271)
T ss_dssp SSEEEEECCTTCC--GGGGTTTGGGGTT-TSEEEECCCSC---CSSSCCTTCC-TTGGGSHHHHHHHHHHHHHH--TTCS
T ss_pred CCcEEEEcCCCCc--hhhHHHHHHHHHh-cCeEEEECCCC---CCCCCCCccc-ccccccHHHHHHHHHHHHHH--cCCC
Confidence 3789999996544 4567777777765 79999999999 5554311100 01112345555544444444 2357
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc-cC-CCCCC--c-eeeeccCCC-------CCCCCCCC-C
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-GT-TDIPD--W-CYVESYGSK-------GKDSFTES-P 627 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~-~~-~~~~~--~-~~~~~~~~~-------~~~~~~~~-~ 627 (715)
++.|+||||||.+++.+|.++|++++++|++++........ .. ..... . ......... ........ .
T Consensus 91 ~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (271)
T 1wom_A 91 ETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPD 170 (271)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCTT
T ss_pred CeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999998752110000 00 00000 0 000000000 00000000 0
Q ss_pred ChhhHHH----H---------------HhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC
Q 005093 628 SVEDLTR----F---------------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 688 (715)
Q Consensus 628 ~~~~~~~----~---------------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (715)
.....+. + ...+....+.++++|+|+++|++|..+|.+.+..+.+.+. ..+++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~ 246 (271)
T 1wom_A 171 RPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLP----YSSLKQMEA 246 (271)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSCHHHHHHHHHHSS----SEEEEEEEE
T ss_pred chHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCCHHHHHHHHHHCC----CCEEEEeCC
Confidence 0000000 0 1112233567889999999999999999877766655543 478999999
Q ss_pred CCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 689 DVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 689 ~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+||....+. ..++.+.|.+|+++++
T Consensus 247 ~gH~~~~e~-p~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 247 RGHCPHMSH-PDETIQLIGDYLKAHV 271 (271)
T ss_dssp ESSCHHHHC-HHHHHHHHHHHHHHHC
T ss_pred CCcCccccC-HHHHHHHHHHHHHhcC
Confidence 999765443 4578899999998764
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-16 Score=155.29 Aligned_cols=228 Identities=17% Similarity=0.165 Sum_probs=132.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..++.... + ..|.||++||.+.+ ...|...+..|+++ |.|+++|+|| +|.+... .........
T Consensus 17 ~g~~l~y~~~------G--~g~~lvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~-~~~~~~~~~ 81 (294)
T 1ehy_A 17 PDVKIHYVRE------G--AGPTLLLLHGWPGF--WWEWSKVIGPLAEH-YDVIVPDLRG---FGDSEKP-DLNDLSKYS 81 (294)
T ss_dssp SSCEEEEEEE------E--CSSEEEEECCSSCC--GGGGHHHHHHHHTT-SEEEEECCTT---STTSCCC-CTTCGGGGC
T ss_pred CCEEEEEEEc------C--CCCEEEEECCCCcc--hhhHHHHHHHHhhc-CEEEecCCCC---CCCCCCC-ccccccCcC
Confidence 5666764332 1 34689999997654 56788888888776 9999999999 6655321 000001234
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC-CC--CCCcee------
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TD--IPDWCY------ 611 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~-~~--~~~~~~------ 611 (715)
+++..+.+..+++.- ..+++.|+||||||.+++.+|.++|++++++|++++.......... .. ...|..
T Consensus 82 ~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (294)
T 1ehy_A 82 LDKAADDQAALLDAL--GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGHVHESWYSQFHQLD 159 (294)
T ss_dssp HHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-----------CCHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHc--CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCCCCCcchhhccchhccCceEEEecCcc
Confidence 666666666666552 3478999999999999999999999999999999863211000000 00 000100
Q ss_pred -eec-cCCCC------C----CC-CC--CCCChhhHHHHH-----------------hc--Cchh-----hccCCCCcEE
Q 005093 612 -VES-YGSKG------K----DS-FT--ESPSVEDLTRFH-----------------SK--SPIS-----HISKVKTPTI 652 (715)
Q Consensus 612 -~~~-~~~~~------~----~~-~~--~~~~~~~~~~~~-----------------~~--sp~~-----~~~~i~~P~L 652 (715)
... ..... . .. .. .....+..+.+. .. .... .+.++++|+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~L 239 (294)
T 1ehy_A 160 MAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHTMSDLPVT 239 (294)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCCCTGGGSCBCSCEE
T ss_pred hhHHHhccchhHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHhhhhhhcCCcccCcCCCCEE
Confidence 000 00000 0 00 00 000011111110 00 0000 2237889999
Q ss_pred EEeeCCCCcCCc-hHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHH
Q 005093 653 FLLGAQDLRVPV-SNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 653 ii~G~~D~~v~~-~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 710 (715)
+++|++|..+|. .....+.+. -..+++++++++||....+. ..++.+.|.+||
T Consensus 240 vi~G~~D~~~~~~~~~~~~~~~----~~~~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl 293 (294)
T 1ehy_A 240 MIWGLGDTCVPYAPLIEFVPKY----YSNYTMETIEDCGHFLMVEK-PEIAIDRIKTAF 293 (294)
T ss_dssp EEEECCSSCCTTHHHHHHHHHH----BSSEEEEEETTCCSCHHHHC-HHHHHHHHHHHC
T ss_pred EEEeCCCCCcchHHHHHHHHHH----cCCCceEEeCCCCCChhhhC-HHHHHHHHHHHh
Confidence 999999998874 333333332 34589999999999765443 446777787775
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=171.80 Aligned_cols=270 Identities=13% Similarity=0.106 Sum_probs=169.3
Q ss_pred ceEEeeCCCCceEEEEecCCC-CCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
...+.++|||++++|+++.++ ....+|.+. .+++.+.+++......+. +..+..++|||||++|||......
T Consensus 70 ~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~---~~~~~~~~~SPDG~~la~~~~~~G--- 143 (695)
T 2bkl_A 70 DSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDG---TVSLGTWAVSWDGKKVAFAQKPNA--- 143 (695)
T ss_dssp CEECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSS---CEEEEEEEECTTSSEEEEEEEETT---
T ss_pred ccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCC---CEEEEEEEECCCCCEEEEEECCCC---
Confidence 344566799999999988763 245678887 577777787643211000 012378999999999999876531
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 202 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i 202 (715)
. ....|+++|+++|+..... .........++|||||+. |
T Consensus 144 -------------------------------~-----~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~----l 182 (695)
T 2bkl_A 144 -------------------------------A-----DEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKG----F 182 (695)
T ss_dssp -------------------------------C-----SCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSE----E
T ss_pred -------------------------------C-----ceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCE----E
Confidence 1 2378999999999875111 111222367899999999 9
Q ss_pred EEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc--eecCCC---CccccceeEcCCCCeEEE
Q 005093 203 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTES---ISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 203 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~---~~~~~~~~~spdg~~l~~ 277 (715)
+|++...... +-.....+..+||++++ .++.. +.+... ......+.|||||++|++
T Consensus 183 ~~~~~d~~~~--~~~~~~~~~~~v~~~~l-----------------~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~ 243 (695)
T 2bkl_A 183 YYEWLPTDPS--IKVDERPGYTTIRYHTL-----------------GTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFV 243 (695)
T ss_dssp EEEECCCCTT--SCGGGGGGGCEEEEEET-----------------TSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEE
T ss_pred EEEEecCCCC--CccccCCCCCEEEEEEC-----------------CCCchhceEEEecCCCCEEEEEEEECCCCCEEEE
Confidence 9987532100 00001124457999997 55442 233332 235678999999999999
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeC-Ce
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SS 356 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~-~~ 356 (715)
.+... ....+||+++..+++.+.++.... ....+.| +||+ +++.+... ..
T Consensus 244 ~~~~~-------~~~~~l~~~~~~~~~~~~l~~~~~--------------------~~~~~~~-~~g~-l~~~s~~~~~~ 294 (695)
T 2bkl_A 244 YILRG-------WSENDVYWKRPGEKDFRLLVKGVG--------------------AKYEVHA-WKDR-FYVLTDEGAPR 294 (695)
T ss_dssp EEEET-------TTEEEEEEECTTCSSCEEEEECSS--------------------CCEEEEE-ETTE-EEEEECTTCTT
T ss_pred EEeCC-------CCceEEEEEcCCCCceEEeecCCC--------------------ceEEEEe-cCCc-EEEEECCCCCC
Confidence 98763 134579999876655544432211 1112234 6888 88877644 46
Q ss_pred eEEEEEECCCCcE---EEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 357 QVIISVNVSSGEL---LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 357 ~~l~~~d~~tg~~---~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
..|+.+|+++++. +.+...........++..++.++++... +...+|+++++.
T Consensus 295 ~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~-dg~~~l~~~~~~ 350 (695)
T 2bkl_A 295 QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLK-DATSEVRVATLK 350 (695)
T ss_dssp CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEE-TTEEEEEEEETT
T ss_pred CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEE-CCEEEEEEEeCC
Confidence 7999999988763 6666544222233344446777776644 334568877764
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=154.75 Aligned_cols=117 Identities=18% Similarity=0.279 Sum_probs=78.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..++....-+ ...|.||++||++.......+ ...+..+||.|+++|+|| ||.+... .......
T Consensus 20 ~g~~l~y~~~G~------~~g~pvvllHG~~~~~~~~~~---~~~~~~~~~~vi~~D~~G---~G~S~~~---~~~~~~~ 84 (313)
T 1azw_A 20 DRHTLYFEQCGN------PHGKPVVMLHGGPGGGCNDKM---RRFHDPAKYRIVLFDQRG---SGRSTPH---ADLVDNT 84 (313)
T ss_dssp SSCEEEEEEEEC------TTSEEEEEECSTTTTCCCGGG---GGGSCTTTEEEEEECCTT---STTSBST---TCCTTCC
T ss_pred CCCEEEEEecCC------CCCCeEEEECCCCCccccHHH---HHhcCcCcceEEEECCCC---CcCCCCC---ccccccc
Confidence 566665443322 134669999997654322111 233446899999999999 6655321 1111234
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCc
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 594 (715)
.+++.+.+..+++.- ..+++.|+||||||.+++.+|.++|++++++|++++.
T Consensus 85 ~~~~~~dl~~l~~~l--~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 85 TWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp HHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred HHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 556666666666552 3568999999999999999999999999999998864
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.7e-16 Score=153.22 Aligned_cols=218 Identities=15% Similarity=0.123 Sum_probs=130.9
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
...+.|.||++||++.. ...|...+..|++. |.|+++|+|| +|.+... .....+++..+.+..+++.
T Consensus 16 ~~~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~-~~v~~~d~~G---~G~s~~~-----~~~~~~~~~~~~~~~~l~~-- 82 (267)
T 3fla_A 16 APDARARLVCLPHAGGS--ASFFFPLAKALAPA-VEVLAVQYPG---RQDRRHE-----PPVDSIGGLTNRLLEVLRP-- 82 (267)
T ss_dssp CTTCSEEEEEECCTTCC--GGGGHHHHHHHTTT-EEEEEECCTT---SGGGTTS-----CCCCSHHHHHHHHHHHTGG--
T ss_pred CCCCCceEEEeCCCCCC--chhHHHHHHHhccC-cEEEEecCCC---CCCCCCC-----CCCcCHHHHHHHHHHHHHh--
Confidence 34567999999997654 56788888888655 9999999999 6665421 1122455666555555544
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCc----eeEEEecCCcchhhhhccCCC-CCCceeeeccCCCC--CCCCCCCCC-
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTD-IPDWCYVESYGSKG--KDSFTESPS- 628 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~- 628 (715)
.+.+++.|+|||+||.+++.++.++|++ ++++++.++............ .....+...+.... .......+.
T Consensus 83 ~~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (267)
T 3fla_A 83 FGDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSDAAMLADPEL 162 (267)
T ss_dssp GTTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHHHHHHHSHHH
T ss_pred cCCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcchhhccCHHH
Confidence 2457899999999999999999999986 888888876542211100000 00000000000000 000000000
Q ss_pred h--------hhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchH
Q 005093 629 V--------EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 700 (715)
Q Consensus 629 ~--------~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 700 (715)
. ..........+.. ..++++|+|+++|++|..+|.+.+..+.+.+. .+++++++++ ||.+... ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~~g-gH~~~~~-~~~ 236 (267)
T 3fla_A 163 LAMVLPAIRSDYRAVETYRHEP-GRRVDCPVTVFTGDHDPRVSVGEARAWEEHTT---GPADLRVLPG-GHFFLVD-QAA 236 (267)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCT-TCCBSSCEEEEEETTCTTCCHHHHHGGGGGBS---SCEEEEEESS-STTHHHH-THH
T ss_pred HHHHHHHHHHHHHhhhcccccc-cCcCCCCEEEEecCCCCCCCHHHHHHHHHhcC---CCceEEEecC-Cceeecc-CHH
Confidence 0 0000001111111 14678999999999999999877666554442 2589999998 9976543 455
Q ss_pred HHHHHHHHHHHHh
Q 005093 701 ESFLNIGLWFKKY 713 (715)
Q Consensus 701 ~~~~~i~~wl~~~ 713 (715)
++.+.|.+||++.
T Consensus 237 ~~~~~i~~fl~~~ 249 (267)
T 3fla_A 237 PMIATMTEKLAGP 249 (267)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHhccc
Confidence 7888888888764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=178.44 Aligned_cols=288 Identities=13% Similarity=0.022 Sum_probs=192.2
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 93 (715)
...||..+. + .+..+|+... +.+..|+|||| +++|+.+.+ +...+|.+. .++..+.++... ..
T Consensus 184 ~~~lw~~~~--~-~~~~~l~~~~-----~~v~~~~~s~d--~l~~~~~~d-g~~~l~~~~~~g~~~~~l~~~~-~~---- 247 (1045)
T 1k32_A 184 RGKIWIEVN--S-GAFKKIVDMS-----THVSSPVIVGH--RIYFITDID-GFGQIYSTDLDGKDLRKHTSFT-DY---- 247 (1045)
T ss_dssp CCEEEEEEE--T-TEEEEEECCS-----SCCEEEEEETT--EEEEEECTT-SSCEEEEEETTSCSCEECCCCC-SS----
T ss_pred cCCEEEECC--C-CCeEECcCCC-----CcccceEEeCC--EEEEEEecc-CceEEEEEeCCCCcceEecCCC-Cc----
Confidence 456776332 2 2334443323 67899999998 888887765 667888888 455555554322 12
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC----------CCCcCCCCCCCCCccc-CCcCcccCCccCc
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG----------SSDKDCNSWKGQGDWE-EDWGETYAGKRQP 162 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 162 (715)
..+.|||||++|+|.... ....+........ ............+.|. |+ |..++.....
T Consensus 248 ------~~~~~SpDG~~la~~~~~---~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~~~ 317 (1045)
T 1k32_A 248 ------YPRHLNTDGRRILFSKGG---SIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVSRG 317 (1045)
T ss_dssp ------CEEEEEESSSCEEEEETT---EEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEETT
T ss_pred ------ceeeEcCCCCEEEEEeCC---EEEEecCCceEeeeeccCcccccccccccccccceeeecCCC-CCEEEEEEcC
Confidence 567999999999997421 0111111000000 0000001123456677 77 5555555578
Q ss_pred eEEEEEccCCceEeecCCCCCC-ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEE-EEecccccchhhh
Q 005093 163 SLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY-AVRVSLYKSEASE 240 (715)
Q Consensus 163 ~l~~~~~~~g~~~~l~~~~~~~-~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~~~~~~~ 240 (715)
.|+++++++++...+ ..... .+..+.|| ||+. |+|.+. ...|| ++++
T Consensus 318 ~i~~~~~~~~~~~~~--~~~~~~~~~~~~~s-dg~~----l~~~s~---------------~~~l~~~~d~--------- 366 (1045)
T 1k32_A 318 QAFIQDVSGTYVLKV--PEPLRIRYVRRGGD-TKVA----FIHGTR---------------EGDFLGIYDY--------- 366 (1045)
T ss_dssp EEEEECTTSSBEEEC--SCCSCEEEEEECSS-SEEE----EEEEET---------------TEEEEEEEET---------
T ss_pred EEEEEcCCCCceEEc--cCCCcceEEeeeEc-CCCe----EEEEEC---------------CCceEEEEEC---------
Confidence 899999999988887 33333 57789999 9999 998762 23799 8997
Q ss_pred hhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 241 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
.+++.+.++........++|||||++|++.+.+. .|+++|+.+++.+.+....
T Consensus 367 --------~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~-----------~v~~~d~~tg~~~~~~~~~-------- 419 (1045)
T 1k32_A 367 --------RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF-----------EIMTVDLETGKPTVIERSR-------- 419 (1045)
T ss_dssp --------TTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS-----------EEEEEETTTCCEEEEEECS--------
T ss_pred --------CCCCceEecCCccceeeeEECCCCCEEEEECCCC-----------eEEEEECCCCceEEeccCC--------
Confidence 7777788885556788899999999999887652 5999999887654332110
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeC-------CeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEE
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIA 393 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~-------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~ 393 (715)
...+..++|+|||+.|++.+... ....|+.+|+++++...++..........|+++|+.|++
T Consensus 420 -----------~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 420 -----------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY 488 (1045)
T ss_dssp -----------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred -----------CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEE
Confidence 01345778999999888877643 356899999999998888766554444679999999988
Q ss_pred EEeC
Q 005093 394 VSSS 397 (715)
Q Consensus 394 ~~~~ 397 (715)
....
T Consensus 489 ~s~~ 492 (1045)
T 1k32_A 489 LSYR 492 (1045)
T ss_dssp EESC
T ss_pred Eecc
Confidence 7653
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=160.75 Aligned_cols=226 Identities=12% Similarity=0.065 Sum_probs=135.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
.+|..++...+- ..|.||++||++.. ...|...+..|+++ |.|+++|+|| +|.+... ....
T Consensus 17 ~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~-----~~~~ 77 (301)
T 3kda_A 17 VDGVKLHYVKGG--------QGPLVMLVHGFGQT--WYEWHQLMPELAKR-FTVIAPDLPG---LGQSEPP-----KTGY 77 (301)
T ss_dssp ETTEEEEEEEEE--------SSSEEEEECCTTCC--GGGGTTTHHHHTTT-SEEEEECCTT---STTCCCC-----SSCS
T ss_pred eCCeEEEEEEcC--------CCCEEEEECCCCcc--hhHHHHHHHHHHhc-CeEEEEcCCC---CCCCCCC-----CCCc
Confidence 367777644432 45789999997655 55677788889888 9999999999 5544321 1223
Q ss_pred chhhHHHHHHHHHHcCCCCCce-EEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC------CCCCcee-
Q 005093 540 DVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT------DIPDWCY- 611 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~-i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~- 611 (715)
.++++.+.+..+++. ++.++ +.|+|||+||.+++.++.++|++++++|+++|........... ....|..
T Consensus 78 ~~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (301)
T 3kda_A 78 SGEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRFPAFTAQGESLVWHFS 155 (301)
T ss_dssp SHHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCCSSGGGGGSBSEETTEECSSTHHH
T ss_pred cHHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCCCCCCccchhhhcchhhhhhhhHH
Confidence 455666555555554 23456 9999999999999999999999999999999864211110000 0000000
Q ss_pred --------eeccCC--------CCCCCCCC---CCChhhHHHHHh--c-----------------------CchhhccCC
Q 005093 612 --------VESYGS--------KGKDSFTE---SPSVEDLTRFHS--K-----------------------SPISHISKV 647 (715)
Q Consensus 612 --------~~~~~~--------~~~~~~~~---~~~~~~~~~~~~--~-----------------------sp~~~~~~i 647 (715)
...+.. ........ .........+.. . .....+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 235 (301)
T 3kda_A 156 FFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNASFEYYRALNESVRQNAELAKTRLQM 235 (301)
T ss_dssp HHHCSTTHHHHHHTTCHHHHHHHHHHHTCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHTHHHHHHHHHHHTTSCBCS
T ss_pred HhhcCcchHHHHhccchHHHHHHHHHhccCCcccCCHHHHHHHHHHhccccccchHHHHHHhhccchhhcccchhhcccc
Confidence 000000 00000000 000011111100 0 001122378
Q ss_pred CCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 648 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
++|+|+++|++| ++......+ .+....+++++++++||..... ...++.+.|.+|+++.
T Consensus 236 ~~P~l~i~G~~D--~~~~~~~~~----~~~~~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~~l~~~ 294 (301)
T 3kda_A 236 PTMTLAGGGAGG--MGTFQLEQM----KAYAEDVEGHVLPGCGHWLPEE-CAAPMNRLVIDFLSRG 294 (301)
T ss_dssp CEEEEEECSTTS--CTTHHHHHH----HTTBSSEEEEEETTCCSCHHHH-THHHHHHHHHHHHTTS
T ss_pred CcceEEEecCCC--CChhHHHHH----HhhcccCeEEEcCCCCcCchhh-CHHHHHHHHHHHHhhC
Confidence 999999999999 555554444 3333568999999999987643 3457888899998764
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=161.21 Aligned_cols=229 Identities=16% Similarity=0.096 Sum_probs=137.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..++...+- +.|+||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+..... .......
T Consensus 16 ~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G---~G~S~~~~~-~~~~~~~ 80 (297)
T 2qvb_A 16 AGKRMAYIDEG--------KGDAIVFQHGNPTS--SYLWRNIMPHLEG-LGRLVACDLIG---MGASDKLSP-SGPDRYS 80 (297)
T ss_dssp TTEEEEEEEES--------SSSEEEEECCTTCC--GGGGTTTGGGGTT-SSEEEEECCTT---STTSCCCSS-CSTTSSC
T ss_pred CCEEEEEEecC--------CCCeEEEECCCCch--HHHHHHHHHHHhh-cCeEEEEcCCC---CCCCCCCCC-ccccCcC
Confidence 56677644331 24899999997654 4456666777765 49999999999 554432110 0111134
Q ss_pred hhhHHHHHHHHHHcCCCCC-ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC----------CCCC-
Q 005093 541 VNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT----------DIPD- 608 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~-~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~----------~~~~- 608 (715)
.++..+.+..+++. ++. +++.++|||+||.+++.++.++|++++++|+++|........... ....
T Consensus 81 ~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (297)
T 2qvb_A 81 YGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTWADWPPAVRGVFQGFRSPQG 158 (297)
T ss_dssp HHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCccCCCCChHHHHHHHHHhcccc
Confidence 66666666655555 244 789999999999999999999999999999999865311000000 0000
Q ss_pred c-------eeeecc-C----CCC--------CCCCCCC-CChhh-HHHHHhc--------------CchhhccCCCCcEE
Q 005093 609 W-------CYVESY-G----SKG--------KDSFTES-PSVED-LTRFHSK--------------SPISHISKVKTPTI 652 (715)
Q Consensus 609 ~-------~~~~~~-~----~~~--------~~~~~~~-~~~~~-~~~~~~~--------------sp~~~~~~i~~P~L 652 (715)
. .+...+ . ... ...+... ..... ...+... +....+.++++|+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l 238 (297)
T 2qvb_A 159 EPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAEVVALVNEYRSWLEETDMPKL 238 (297)
T ss_dssp HHHHHTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCSCEE
T ss_pred hhhhccccHHHHHHHhccccccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchhhHHHHHHHHhhcccccccEE
Confidence 0 000000 0 000 0000000 00000 0111111 12334567899999
Q ss_pred EEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 653 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 653 ii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+++|++|..+|.+.+..+.+.+ .. +++++ ++||..... ...++.+.|.+||++.
T Consensus 239 ii~G~~D~~~~~~~~~~~~~~~----~~-~~~~~-~~gH~~~~~-~p~~~~~~i~~fl~~~ 292 (297)
T 2qvb_A 239 FINAEPGAIITGRIRDYVRSWP----NQ-TEITV-PGVHFVQED-SPEEIGAAIAQFVRRL 292 (297)
T ss_dssp EEEEEECSSSCHHHHHHHHTSS----SE-EEEEE-EESSCGGGT-CHHHHHHHHHHHHHHH
T ss_pred EEecCCCCcCCHHHHHHHHHHc----CC-eEEEe-cCccchhhh-CHHHHHHHHHHHHHHH
Confidence 9999999999987766555443 33 78888 999986644 4567889999999875
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=158.53 Aligned_cols=244 Identities=14% Similarity=0.104 Sum_probs=149.2
Q ss_pred cccCCCCce--EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--Cc----------------cch-HHHHHH-HhCCcEE
Q 005093 456 NLTKGAQKP--FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LS----------------SYS-KSLAFL-SSVGYSL 513 (715)
Q Consensus 456 ~~~~~~g~~--l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~--~~----------------~~~-~~~~~l-a~~G~~v 513 (715)
...+.+|.+ ..+.++.|.+. ..+.|+|.|-||...... .. .+. ..+..+ +++||+|
T Consensus 81 ~std~~G~p~~~~gtv~~P~~~--~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~~~l~~G~~V 158 (462)
T 3guu_A 81 RTTNTQNEAVADVATVWIPAKP--ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIGWALQQGYYV 158 (462)
T ss_dssp EEECTTSCEEEEEEEEEECSSC--CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHHHHHHTTCEE
T ss_pred EEECCCCCEEEEEEEEEecCCC--CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHHHHHhCCCEE
Confidence 344556655 88999999863 235899999999443211 00 112 245666 8999999
Q ss_pred EEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC-CCceEEEEEeChhHHHHHHHHhhC----CC-ceeE
Q 005093 514 LIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA-NPSKVTVVGGSHGGFLTTHLIGQA----PD-KFVA 587 (715)
Q Consensus 514 i~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~-d~~~i~l~G~S~GG~~a~~~a~~~----p~-~~~~ 587 (715)
+++||+|.+ ..+. .+.....++.++++.+.+...+ ...+++++|||+||..+++++..+ |+ .+++
T Consensus 159 v~~Dy~G~G---~~y~------~~~~~~~~vlD~vrAa~~~~~~~~~~~v~l~G~S~GG~aal~aa~~~~~yapel~~~g 229 (462)
T 3guu_A 159 VSSDHEGFK---AAFI------AGYEEGMAILDGIRALKNYQNLPSDSKVALEGYSGGAHATVWATSLAESYAPELNIVG 229 (462)
T ss_dssp EEECTTTTT---TCTT------CHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEEETHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred EEecCCCCC---Cccc------CCcchhHHHHHHHHHHHHhccCCCCCCEEEEeeCccHHHHHHHHHhChhhcCccceEE
Confidence 999999954 3221 1111122344444444433223 348999999999999999887754 34 5889
Q ss_pred EEecCCcchhhhhccCCCCCCc------------------------------------------eeee---ccCCCC-CC
Q 005093 588 AAARNPLCNLALMVGTTDIPDW------------------------------------------CYVE---SYGSKG-KD 621 (715)
Q Consensus 588 ~v~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~---~~~~~~-~~ 621 (715)
++..++..++.......+...+ +... .+.... ..
T Consensus 230 ~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 309 (462)
T 3guu_A 230 ASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVLTYPFLNVFS 309 (462)
T ss_dssp EEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHHHCTTCCGGG
T ss_pred EEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHHhhccCCHHH
Confidence 9999988776433211000000 0000 000000 00
Q ss_pred CCCCCCC---hhhHHHHHhcCchh-----hccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 622 SFTESPS---VEDLTRFHSKSPIS-----HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 622 ~~~~~~~---~~~~~~~~~~sp~~-----~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
.+.+... ....+.+.+..... ...+.++|+||+||.+|.+||+.++.+++++++++|.++++++|++++|..
T Consensus 310 ~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP~~~s~~l~~~l~~~G~~V~~~~y~~~~H~~ 389 (462)
T 3guu_A 310 LVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVPYQPAATYVKEQCAKGANINFSPYPIAEHLT 389 (462)
T ss_dssp GBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHH
T ss_pred HcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCeEEEEECcCCccC
Confidence 1110000 01111222222111 124567899999999999999999999999999999999999999999976
Q ss_pred CCCCchHHHHHHHHHHHHHhc
Q 005093 694 ERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 694 ~~~~~~~~~~~~i~~wl~~~l 714 (715)
... ..+..+++||+++|
T Consensus 390 ~~~----~~~~d~l~WL~~r~ 406 (462)
T 3guu_A 390 AEI----FGLVPSLWFIKQAF 406 (462)
T ss_dssp HHH----HTHHHHHHHHHHHH
T ss_pred chh----hhHHHHHHHHHHHh
Confidence 422 23678899998875
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-15 Score=171.66 Aligned_cols=270 Identities=12% Similarity=0.127 Sum_probs=169.9
Q ss_pred ceEEeeCCCCceEEEEecCCC-CCCeEEEEe-c---CCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-S---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~-~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
...+.++|||++++|+++.++ ....+|.+. . +++.+.+++......+. +..+..++|||||++|||.....
T Consensus 109 ~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~---~~~~~~~~~SPDG~~la~~~~~~- 184 (741)
T 1yr2_A 109 ERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDG---ATALDAWAASDDGRLLAYSVQDG- 184 (741)
T ss_dssp CEECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC-------EEEEEEEECTTSSEEEEEEEET-
T ss_pred cccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCC---CEEEEeEEECCCCCEEEEEEcCC-
Confidence 344566799999999998763 246778887 4 66777776643211100 01236899999999999987653
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCc
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
|. ...+|+++|+++|+.... .........++|||| +.
T Consensus 185 ---------------------------------G~-----e~~~i~v~dl~tg~~~~~--~~~~~~~~~~~wspD-~~-- 221 (741)
T 1yr2_A 185 ---------------------------------GS-----DWRTVKFVGVADGKPLAD--ELKWVKFSGLAWLGN-DA-- 221 (741)
T ss_dssp ---------------------------------TC-----SEEEEEEEETTTCCEEEE--EEEEEESCCCEESTT-SE--
T ss_pred ---------------------------------CC-----ceEEEEEEECCCCCCCCc--cCCCceeccEEEECC-CE--
Confidence 11 236799999999987665 222223457899999 98
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc--eecCCCC---ccccceeEcCCCCe
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTESI---SSAFFPRFSPDGKF 274 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~~---~~~~~~~~spdg~~ 274 (715)
|+|++..... +.+.....+...+||++++ .++.. +.+.... .....+.|||||++
T Consensus 222 --l~~~~~~~~~-~~~~~~~~~~~~~v~~~~l-----------------gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~ 281 (741)
T 1yr2_A 222 --LLYSRFAEPK-EGQAFQALNYNQTVWLHRL-----------------GTPQSADQPVFATPELPKRGHGASVSSDGRW 281 (741)
T ss_dssp --EEEEECCCC---------CCCCCEEEEEET-----------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred --EEEEEecCcc-cccccccCCCCCEEEEEEC-----------------CCCchhCEEEeccCCCCeEEEEEEECCCCCE
Confidence 9998743221 0011112234567999997 44432 2333222 23678999999999
Q ss_pred EEEEecCCCCCCCCccccceeEeeecCCC--C-CCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEe
Q 005093 275 LVFLSAKSSVDSGAHSATDSLHRIDWPTN--G-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 351 (715)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~~l~~~~~~~~--~-~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~ 351 (715)
|+|.+.+.. ....+||++|+.++ + .+.++...+ .. ...+++||+.|++.+
T Consensus 282 l~~~~~~~~------~~~~~l~~~d~~~~~~~~~~~l~~~~~--------------------~~-~~~~~~dg~~l~~~s 334 (741)
T 1yr2_A 282 VVITSSEGT------DPVNTVHVARVTNGKIGPVTALIPDLK--------------------AQ-WDFVDGVGDQLWFVS 334 (741)
T ss_dssp EEEEEECTT------CSCCEEEEEEEETTEECCCEEEECSSS--------------------SC-EEEEEEETTEEEEEE
T ss_pred EEEEEEccC------CCcceEEEEECCCCCCcccEEecCCCC--------------------ce-EEEEeccCCEEEEEE
Confidence 999987641 13467999999876 3 333332110 01 112458999999988
Q ss_pred eeCC-eeEEEEEECCCC--cEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 352 IWGS-SQVIISVNVSSG--ELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 352 ~~~~-~~~l~~~d~~tg--~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
.... ..+|+.+|++++ +.+.++..... ....++..++.++++.... .-.+|+++++.
T Consensus 335 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~d-g~~~l~~~~~~ 394 (741)
T 1yr2_A 335 GDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIAGNRLFASYIHD-AKSQVLAFDLD 394 (741)
T ss_dssp CTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEET-TEEEEEEEETT
T ss_pred CCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEECCEEEEEEEEC-CEEEEEEEeCC
Confidence 7543 678999999884 56777655432 2334555577777766543 34568877754
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.2e-16 Score=152.35 Aligned_cols=228 Identities=10% Similarity=0.072 Sum_probs=132.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|.+++....-+ ...|+||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+... .....
T Consensus 7 ~g~~l~~~~~g~------~~~~~vv~lHG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G---~G~S~~~-----~~~~~ 69 (264)
T 3ibt_A 7 NGTLMTYSESGD------PHAPTLFLLSGWCQD--HRLFKNLAPLLAR-DFHVICPDWRG---HDAKQTD-----SGDFD 69 (264)
T ss_dssp TTEECCEEEESC------SSSCEEEEECCTTCC--GGGGTTHHHHHTT-TSEEEEECCTT---CSTTCCC-----CSCCC
T ss_pred CCeEEEEEEeCC------CCCCeEEEEcCCCCc--HhHHHHHHHHHHh-cCcEEEEcccc---CCCCCCC-----ccccC
Confidence 556665443322 246799999997655 4567788888855 59999999999 5554321 22234
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-CCceeEEEecCCcchhh-----hhccCCCCCCcee---
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLA-----LMVGTTDIPDWCY--- 611 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~--- 611 (715)
.+++.+.+..+++.- +.+++.|+|||+||.+++.+|.++ |++++++|+++|..... .+........+..
T Consensus 70 ~~~~~~~~~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (264)
T 3ibt_A 70 SQTLAQDLLAFIDAK--GIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQPHPGFWQQLAEGQHPTEYVAGRQ 147 (264)
T ss_dssp HHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCSSCCHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCCCcChhhcchhhcccChhhHHHHHH
Confidence 566666666555552 456899999999999999999999 99999999998765100 0000000000000
Q ss_pred --eec-cCCCC--------CCCCCCCCChhhHH----HH-----HhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHH
Q 005093 612 --VES-YGSKG--------KDSFTESPSVEDLT----RF-----HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 671 (715)
Q Consensus 612 --~~~-~~~~~--------~~~~~~~~~~~~~~----~~-----~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~ 671 (715)
... +.... ...+.... ..... .+ ...++...+.++++|+|+++|..|...+. .....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~~~~~~~--~~~~~ 224 (264)
T 3ibt_A 148 SFFDEWAETTDNADVLNHLRNEMPWFH-GEMWQRACREIEANYRTWGSPLDRMDSLPQKPEICHIYSQPLSQD--YRQLQ 224 (264)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHTGGGSC-HHHHHHHHHHHHHHHHHHSSHHHHHHTCSSCCEEEEEECCSCCHH--HHHHH
T ss_pred HHHHHhcccCCcHHHHHHHHHhhhhcc-chhHHHHHHHhccchhhccchhhcccccCCCeEEEEecCCccchh--hHHHH
Confidence 000 00000 00000000 00000 00 01122356678999999998755543321 11223
Q ss_pred HHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 672 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 672 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
+.+.+.-...++++++++||..... ...++.+.|.+||+
T Consensus 225 ~~~~~~~~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~ 263 (264)
T 3ibt_A 225 LEFAAGHSWFHPRHIPGRTHFPSLE-NPVAVAQAIREFLQ 263 (264)
T ss_dssp HHHHHHCTTEEEEECCCSSSCHHHH-CHHHHHHHHHHHTC
T ss_pred HHHHHhCCCceEEEcCCCCCcchhh-CHHHHHHHHHHHHh
Confidence 3344444568999999999976533 34577788888875
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-16 Score=153.83 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=124.5
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.. ...|...+..|++.||.|+++|+|| +|.+... ....++++.+.+..+++.-..+..
T Consensus 16 ~~~vvllHG~~~~--~~~w~~~~~~L~~~~~~vi~~Dl~G---hG~S~~~------~~~~~~~~a~~l~~~l~~l~~~~~ 84 (264)
T 1r3d_A 16 TPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPG---HGTNPER------HCDNFAEAVEMIEQTVQAHVTSEV 84 (264)
T ss_dssp BCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTT---CSSCC-------------CHHHHHHHHHHHTTCCTTS
T ss_pred CCcEEEEcCCCCC--HHHHHHHHHHhcccCceEEEecCCC---CCCCCCC------CccCHHHHHHHHHHHHHHhCcCCC
Confidence 4889999996654 5678888889977899999999999 5554321 112355666666555555323323
Q ss_pred eEEEEEeChhHHHHHH---HHhhCCCceeEEEecCCcchhhhhc-------------c-CCCCCCceeeeccCCCCCCCC
Q 005093 561 KVTVVGGSHGGFLTTH---LIGQAPDKFVAAAARNPLCNLALMV-------------G-TTDIPDWCYVESYGSKGKDSF 623 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~---~a~~~p~~~~~~v~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~ 623 (715)
++.|+||||||.+++. +|.++|++++++|+.++........ . ............+.. ...+
T Consensus 85 p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 162 (264)
T 1r3d_A 85 PVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQ--QAVF 162 (264)
T ss_dssp EEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTT--SGGG
T ss_pred ceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCCCCCChhhhhhhhcccHHHHHHhccccHHHHHHHHhh--hhhh
Confidence 4999999999999999 8888999999999987643211000 0 000000000000000 0000
Q ss_pred CCCCC--------------hhhHH-HHHh------cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEE
Q 005093 624 TESPS--------------VEDLT-RFHS------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 682 (715)
Q Consensus 624 ~~~~~--------------~~~~~-~~~~------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (715)
..... ..... .+.. .+....+.++++|+|+++|++|..++ .+.+.+ . .+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~~---~--~~ 232 (264)
T 1r3d_A 163 SSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-----QLAESS---G--LS 232 (264)
T ss_dssp TTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-----HHHHHH---C--SE
T ss_pred hccCHHHHHHHHHHHhhcchHHHHHHHHhhhhccCccHHHHHHhcCCCEEEEEECCCchHH-----HHHHHh---C--Cc
Confidence 00000 00000 0110 11223456789999999999997541 223332 2 56
Q ss_pred EEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 683 VIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 683 ~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+++++++||....+. ..++.+.|.+|++++.
T Consensus 233 ~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~~~ 263 (264)
T 1r3d_A 233 YSQVAQAGHNVHHEQ-PQAFAKIVQAMIHSII 263 (264)
T ss_dssp EEEETTCCSCHHHHC-HHHHHHHHHHHHHHHC
T ss_pred EEEcCCCCCchhhcC-HHHHHHHHHHHHHHhc
Confidence 889999999876443 4578899999998764
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=157.48 Aligned_cols=211 Identities=13% Similarity=0.114 Sum_probs=125.4
Q ss_pred CCcEEEEEcCCCCCC-CCccchHHHHHHHhCCcEEEEEcC----CCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHc
Q 005093 480 CDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNY----RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 554 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~-~~~~~~~~~~~la~~G~~vi~~d~----rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~ 554 (715)
..|+||++||.+... ....|...+..| ++||.|+++|+ || +|.+.. ....+|+.++++++.+.
T Consensus 37 ~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G---~G~S~~--------~~~~~d~~~~~~~l~~~ 104 (335)
T 2q0x_A 37 ARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIG---SGPQDH--------AHDAEDVDDLIGILLRD 104 (335)
T ss_dssp SSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTT---SCSCCH--------HHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCC---CCCccc--------cCcHHHHHHHHHHHHHH
Confidence 457899999955432 223355677777 78999999964 67 555421 12367888888888775
Q ss_pred CCCCCceEEEEEeChhHHHHHHHHh--hCCCceeEEEecCCcchhhhh-----------------ccCCCCCCceeeecc
Q 005093 555 GLANPSKVTVVGGSHGGFLTTHLIG--QAPDKFVAAAARNPLCNLALM-----------------VGTTDIPDWCYVESY 615 (715)
Q Consensus 555 ~~~d~~~i~l~G~S~GG~~a~~~a~--~~p~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 615 (715)
.+.+++.|+||||||.+++.++. .+|++++++|+.+|....... ..............+
T Consensus 105 --l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (335)
T 2q0x_A 105 --HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDPENPLFTPEGCAARKEHVEKLMAEGRGEDSLAMLKH 182 (335)
T ss_dssp --SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCCTTSTTTSHHHHHHHHHHHHHHHHHTCTTCGGGGTTT
T ss_pred --cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcccchhcccCHHHHHHHHHHHHHHhhccCccccccchhh
Confidence 35688999999999999999998 579999999998876432100 000000000000000
Q ss_pred C-CCC-CCCCCC--CCChh-h-HHHHH---hcCchhhccCCCCcEEEEeeCCCCcCCchHH-HHHHHHHHHcCCcEE---
Q 005093 616 G-SKG-KDSFTE--SPSVE-D-LTRFH---SKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVETK--- 682 (715)
Q Consensus 616 ~-~~~-~~~~~~--~~~~~-~-~~~~~---~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~~~~l~~~g~~~~--- 682 (715)
. ... ...+.. ..... . ..... ..+....+.++++|+|+++|++|.++|+... ..+.+.+.+.-...+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLvi~G~~D~~vp~~~~~~~~~~~l~~~~~~~~~~~ 262 (335)
T 2q0x_A 183 YDIPITPARLAGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPLLLMLAHNVQYKPSDEEVGTVLEGVRDHTGCNRVTV 262 (335)
T ss_dssp CSSCCCHHHHHTCSCSSHHHHTHHHHHTTCHHHHHHTGGGCCSCEEEEEECCTTCCCCHHHHHHHHHHHHHHSSSSCEEE
T ss_pred ccCccCHHHHhhccCCCchhhhhhhhhhhhhhHHHHHHhcCCCCeEEEEecCCCCCChhhhHHHHHHHHHHhcCcccccc
Confidence 0 000 000000 00000 0 00000 0112235678999999999999999998642 233444544322333
Q ss_pred -----E-----EEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 683 -----V-----IVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 683 -----~-----~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+ ++++++|| +..+.+.+||++.
T Consensus 263 ~~~~~~~~~~~~~i~~agH---------e~~~~i~~FL~~~ 294 (335)
T 2q0x_A 263 SYFNDTCDELRRVLKAAES---------EHVAAILQFLADE 294 (335)
T ss_dssp EECCCEECTTSCEEECCHH---------HHHHHHHHHHHHH
T ss_pred ccccchhhhhhcccCCCCC---------HHHHHHHHHHHhh
Confidence 5 78999999 3478899998764
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=148.54 Aligned_cols=203 Identities=16% Similarity=0.101 Sum_probs=126.5
Q ss_pred CCcEEEEEcCCCCCCCCccch----HHHHHHHhCCcEEEEEcCCCCCC------------------Cch--hhhhcCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYS----KSLAFLSSVGYSLLIVNYRGSLG------------------FGE--EALQSLPGK 535 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~----~~~~~la~~G~~vi~~d~rG~~~------------------~g~--~~~~~~~~~ 535 (715)
+.|.||++||.+.+ ...|. .+...|.++||.|+.+|+++... +|. .|.. .
T Consensus 4 ~~~~vl~lHG~g~~--~~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~----~ 77 (243)
T 1ycd_A 4 QIPKLLFLHGFLQN--GKVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFY----H 77 (243)
T ss_dssp CCCEEEEECCTTCC--HHHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSC----C
T ss_pred cCceEEEeCCCCcc--HHHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCccccc----C
Confidence 56899999996554 33333 35566777899999999993210 111 1100 0
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCC------CceeEEEecCCcchhhhhccCCCCCCc
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP------DKFVAAAARNPLCNLALMVGTTDIPDW 609 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p------~~~~~~v~~~~~~~~~~~~~~~~~~~~ 609 (715)
.......|+.++++++.+....+..+++|+||||||.+|+.++.+++ ..++++++.++....... ......
T Consensus 78 ~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~---~~~~~~ 154 (243)
T 1ycd_A 78 SEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPD---PEHPGE 154 (243)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEEC---TTSTTC
T ss_pred CCCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCcc---cccccc
Confidence 01122456666677666542233468999999999999999988642 246777777765422100 000000
Q ss_pred eeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcC---CcEEEEEe
Q 005093 610 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG---VETKVIVF 686 (715)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g---~~~~~~~~ 686 (715)
. .+. .. + ...+..+.++++|+|++||++|.++|++.+..+++.+...+ .....+++
T Consensus 155 ~---~~~-------------~~---~--~~~~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~~~~~~~~~~ 213 (243)
T 1ycd_A 155 L---RIT-------------EK---F--RDSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYE 213 (243)
T ss_dssp E---EEC-------------GG---G--TTTTCCCTTCCCEEEEEEETTCSSSCHHHHHHHHHHHHHHTTTCTTTEEEEE
T ss_pred c---ccc-------------hh---H--HHhccCcccCCCCEEEEEeCCCCccCHHHHHHHHHHhhhhccccccccEEEe
Confidence 0 000 00 0 01122345688999999999999999999999999887652 11234456
Q ss_pred CCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 687 PNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 687 ~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
+++||.+... ..+.+.+.+||+++++
T Consensus 214 ~~~gH~~~~~---~~~~~~i~~fl~~~~~ 239 (243)
T 1ycd_A 214 HPGGHMVPNK---KDIIRPIVEQITSSLQ 239 (243)
T ss_dssp ESSSSSCCCC---HHHHHHHHHHHHHHHC
T ss_pred cCCCCcCCch---HHHHHHHHHHHHHhhh
Confidence 6789976543 3588999999998764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=156.28 Aligned_cols=249 Identities=10% Similarity=0.058 Sum_probs=156.9
Q ss_pred ccceEEeeCCCCceEEEEecCC-----CCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEee
Q 005093 43 TGASAVVPSPSGSKLLVVRNPE-----NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 116 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~ 116 (715)
..+..|++ ||++|||+.... .....++.+. .+++.+++ ... ..+.|||||++|+|.+.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~----------~~~~~SpDg~~la~~~~ 78 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENA----------TMPRISPDGKKIAFMRA 78 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESC----------EEEEECTTSSEEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccC----------CCeEECCCCCEEEEEEe
Confidence 44678888 999999986432 1234577766 56665554 222 68999999999999865
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCC
Q 005093 117 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~ 196 (715)
... . ...+||++++++++.+.++ .... +..+.|||||+
T Consensus 79 ~~~----------------------------------~-----~~~~l~~~~~~~g~~~~l~--~~~~-~~~~~wspdg~ 116 (347)
T 2gop_A 79 NEE----------------------------------K-----KVSEIWVADLETLSSKKIL--EAKN-IRSLEWNEDSR 116 (347)
T ss_dssp ETT----------------------------------T-----TEEEEEEEETTTTEEEEEE--EESE-EEEEEECTTSS
T ss_pred ccC----------------------------------C-----CcceEEEEECCCCceEEEE--cCCC-ccceeECCCCC
Confidence 421 0 1367999999999988883 3333 77899999999
Q ss_pred CCccEEEEEeecCccce------------eeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCCCccc
Q 005093 197 GLHQYLVFVGWSSETRK------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSA 263 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~------------~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~ 263 (715)
. |+|.+....... .|..+......+||++|+ .+++. +.++. . ..
T Consensus 117 ~----l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~-----------------~~~~~~~~l~~-~-~~ 173 (347)
T 2gop_A 117 K----LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT-----------------ESEEVIEEFEK-P-RF 173 (347)
T ss_dssp E----EEEEEECCCC---------CCCC---------CEEEEEEEET-----------------TTTEEEEEEEE-E-TT
T ss_pred E----EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC-----------------CCCeEEeeecC-C-Cc
Confidence 9 999874310000 010010112357999997 77776 77776 4 77
Q ss_pred cceeEcCCCCeEEEEecCCCCCCCCccc-cceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCcccc
Q 005093 264 FFPRFSPDGKFLVFLSAKSSVDSGAHSA-TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 342 (715)
Q Consensus 264 ~~~~~spdg~~l~~~~~~~~~~~g~~~~-~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 342 (715)
..+.||||| ++|.+...... .... ..+||+++ +++.+.++.. . ... .++|
T Consensus 174 ~~~~~spdg--~~~~~~~~~~~--~~~~~~~~l~~~d--~~~~~~l~~~-~--------------------~~~--~~sp 224 (347)
T 2gop_A 174 SSGIWHRDK--IVVNVPHREII--PQYFKFWDIYIWE--DGKEEKMFEK-V--------------------SFY--AVDS 224 (347)
T ss_dssp CEEEEETTE--EEEEEECCCSS--CCSSCCEEEEEEE--TTEEEEEEEE-E--------------------SEE--EEEE
T ss_pred ccccCCCCe--EEEEEeccccc--ccccccccEEEeC--CCceEEeccC-c--------------------cee--eECC
Confidence 889999999 77777553100 0001 45799998 4444333321 0 011 2489
Q ss_pred CCCEEEEEeeeC-----CeeEEEEEECCCCcEEEecCCC-CCcee-EEEeecCCEEEEEEeCCCCCCeEEEEe
Q 005093 343 DGCTMLLSSIWG-----SSQVIISVNVSSGELLRITPAE-SNFSW-SLLTLDGDNIIAVSSSPVDVPQVKYGY 408 (715)
Q Consensus 343 dg~~l~~~~~~~-----~~~~l~~~d~~tg~~~~l~~~~-~~~~~-~~~s~~~~~l~~~~~~~~~p~~l~~~~ 408 (715)
||+.|++.+... ....||.+| +++.+.++... ..+.. ..|+ ++ ++++.... ....|+ ++
T Consensus 225 dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~-~~~~l~-~~ 290 (347)
T 2gop_A 225 DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEE-GSVNLY-IW 290 (347)
T ss_dssp CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEET-TEEEEE-EE
T ss_pred CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecC-CcEEEE-Ec
Confidence 999888887643 246899999 78888887653 22332 4566 54 65555433 334566 55
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.4e-16 Score=156.67 Aligned_cols=216 Identities=12% Similarity=0.060 Sum_probs=132.3
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHhC--CcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 555 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~--G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~ 555 (715)
.+..|.||++||.+.. ...|...++.|+++ ||.|+++|+|| +|.+... ....++++.+.+..+.+..
T Consensus 33 ~~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~g~~vi~~D~~G---~G~s~~~------~~~~~~~~~~~l~~~~~~~ 101 (302)
T 1pja_A 33 RASYKPVIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFD---GRESLRP------LWEQVQGFREAVVPIMAKA 101 (302)
T ss_dssp --CCCCEEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSC---SGGGGSC------HHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCeEEEECCCCCC--hhHHHHHHHHHHhcCCCcEEEEeccCC---Cccchhh------HHHHHHHHHHHHHHHhhcC
Confidence 3456789999996554 55788889999998 99999999999 5554321 1134667777777776653
Q ss_pred CCCCceEEEEEeChhHHHHHHHHhhCCC-ceeEEEecCCcchhhhhc------cCCCCCCceeee-ccCC----CCCCCC
Q 005093 556 LANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALMV------GTTDIPDWCYVE-SYGS----KGKDSF 623 (715)
Q Consensus 556 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~----~~~~~~ 623 (715)
.+++.++||||||.+++.++.++|+ +++++|++++........ ............ .+.. .....+
T Consensus 102 ---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (302)
T 1pja_A 102 ---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNY 178 (302)
T ss_dssp ---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGGGSTGGGG
T ss_pred ---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcccccccchhhhhHHHHHHHHHHhhccchHHHHHhhhhhc
Confidence 4789999999999999999999999 799999998764321000 000000000000 0000 000000
Q ss_pred CCCCC-hhhH-------HHHHhcC-------chhhccCCCCcEEEEeeCCCCcCCchHHHHHHH----------------
Q 005093 624 TESPS-VEDL-------TRFHSKS-------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR---------------- 672 (715)
Q Consensus 624 ~~~~~-~~~~-------~~~~~~s-------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~---------------- 672 (715)
...+. .... ..+.... ....+.+++ |+|+++|++|.++|++.+..+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (302)
T 1pja_A 179 WHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVG-HLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQLVY 257 (302)
T ss_dssp BCCTTCHHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCS-EEEEEECTTCSSSSSGGGGGTCEECTTCCEECGGGSHHH
T ss_pred ccChhhhhhhhccchHHHHhhcCCccccchhHHHHHhccC-cEEEEEeCCCCccchhHhhHhhhcCCcccccchhhhhhh
Confidence 11111 1100 0000000 123467788 99999999999999887766532
Q ss_pred --------HHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHH
Q 005093 673 --------ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 673 --------~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 710 (715)
.+.+. ..+++++++++||....+ ....+.+.+.+|+
T Consensus 258 ~~~~~~~~~l~~~-~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl 301 (302)
T 1pja_A 258 LRDSFGLKTLLAR-GAIVRCPMAGISHTAWHS-NRTLYETCIEPWL 301 (302)
T ss_dssp HTTTTSHHHHHHT-TCEEEEECSSCCTTTTTS-CHHHHHHHTGGGC
T ss_pred hhhhhchhhHhhc-CCeEEEEecCcccccccc-CHHHHHHHHHHhc
Confidence 22221 248999999999986644 3446666666665
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-16 Score=163.02 Aligned_cols=212 Identities=11% Similarity=0.033 Sum_probs=140.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcE----EEEEcCCCCCCCchhhhhcCCCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS----LLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~----vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
.|..+..++|+|+++. .+++|+|+++||+.+... ..+...++.|+++|+. |+++|+++... +.. ...
T Consensus 178 ~g~~~~~~vy~P~~~~-~~~~PvlvllHG~~~~~~-~~~~~~~~~l~~~g~~~p~iVV~~d~~~~~~--r~~--~~~--- 248 (403)
T 3c8d_A 178 LKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQS-MPVWPVLTSLTHRQQLPPAVYVLIDAIDTTH--RAH--ELP--- 248 (403)
T ss_dssp TTEEEEEEEEEC------CCCCEEEESSHHHHHHT-SCCHHHHHHHHHTTSSCSCEEEEECCCSHHH--HHH--HSS---
T ss_pred cCCcEEEEEEeCCCCC-CCCCCEEEEeCCHHHhhc-CcHHHHHHHHHHcCCCCCeEEEEECCCCCcc--ccc--cCC---
Confidence 4677888999998653 578999999999654221 1234567788888875 99999986211 111 111
Q ss_pred CccchhhH--HHHHHHHHHcC--CCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceee
Q 005093 537 GSQDVNDV--LTAIDHVIDMG--LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 612 (715)
Q Consensus 537 ~~~~~~d~--~~~i~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 612 (715)
......+. .+++.++.++. ..|+++++|+|+||||++++.++.++|++|+++++++|.+.+....
T Consensus 249 ~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~~~~~~----------- 317 (403)
T 3c8d_A 249 CNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG----------- 317 (403)
T ss_dssp SCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTT-----------
T ss_pred ChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccccCCCC-----------
Confidence 11122332 24566766653 2578899999999999999999999999999999999976432110
Q ss_pred eccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc
Q 005093 613 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692 (715)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 692 (715)
.. +.......+.. . ......+|+++++|+.|..+ ..++.+++++|+++|+++++.++++ +|.
T Consensus 318 ----~~--------~~~~~~~~~~~-~---~~~~~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~~G~~v~~~~~~G-gH~ 379 (403)
T 3c8d_A 318 ----GQ--------QEGVLLEKLKA-G---EVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG-GHD 379 (403)
T ss_dssp ----SS--------SCCHHHHHHHT-T---SSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC-CSC
T ss_pred ----CC--------cHHHHHHHHHh-c---cccCCCceEEEEeeCCCchh-HHHHHHHHHHHHhCCCCEEEEEeCC-CCC
Confidence 00 00011111111 1 12345678999999998654 5788999999999999999999999 587
Q ss_pred CCCCCchHHHHHHHHHHHHHh
Q 005093 693 IERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 693 ~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+. .....+..++.||.+.
T Consensus 380 ~~---~w~~~l~~~l~~l~~~ 397 (403)
T 3c8d_A 380 AL---CWRGGLMQGLIDLWQP 397 (403)
T ss_dssp HH---HHHHHHHHHHHHHHGG
T ss_pred HH---HHHHHHHHHHHHHhcc
Confidence 53 2235567788888654
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-15 Score=151.40 Aligned_cols=233 Identities=13% Similarity=0.165 Sum_probs=131.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-----HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~-----~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
+|.+++...+-+ +....|+||++||.+.... ..|.. .+..|++ +|.|+++|+|| +|.+... .+..
T Consensus 19 ~~~~l~y~~~G~----~~~~~p~vvllHG~~~~~~-~~~~~~~~~~~~~~L~~-~~~vi~~D~~G---~G~s~~~-~~~~ 88 (286)
T 2qmq_A 19 PYGSVTFTVYGT----PKPKRPAIFTYHDVGLNYK-SCFQPLFRFGDMQEIIQ-NFVRVHVDAPG---MEEGAPV-FPLG 88 (286)
T ss_dssp TTEEEEEEEESC----CCTTCCEEEEECCTTCCHH-HHHHHHHTSHHHHHHHT-TSCEEEEECTT---TSTTCCC-CCTT
T ss_pred CCeEEEEEeccC----CCCCCCeEEEeCCCCCCch-hhhhhhhhhchhHHHhc-CCCEEEecCCC---CCCCCCC-CCCC
Confidence 567776554432 1235689999999665421 11333 5667765 69999999999 5433211 0111
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc--------cC-CCC
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--------GT-TDI 606 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~--------~~-~~~ 606 (715)
......+++.+.+..+++. .+.+++.|+|||+||.+++.+|.++|++++++|+++|........ .. ...
T Consensus 89 ~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (286)
T 2qmq_A 89 YQYPSLDQLADMIPCILQY--LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 166 (286)
T ss_dssp CCCCCHHHHHHTHHHHHHH--HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCHHHHHHHHHHHTTSCH
T ss_pred CCccCHHHHHHHHHHHHHH--hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCCcccchhhhhhhhhccccccc
Confidence 1111355555555444443 234689999999999999999999999999999999854211000 00 000
Q ss_pred CCceeeeccCCCC-----------CCCCCCCCChhhHHHHH----hcCc----hhhccCCCCcEEEEeeCCCCcCCchHH
Q 005093 607 PDWCYVESYGSKG-----------KDSFTESPSVEDLTRFH----SKSP----ISHISKVKTPTIFLLGAQDLRVPVSNG 667 (715)
Q Consensus 607 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----~~sp----~~~~~~i~~P~Lii~G~~D~~v~~~~~ 667 (715)
........+.... ...+...........+. .... ...+.++++|+|+++|++|..+| .
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-~-- 243 (286)
T 2qmq_A 167 PDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHED-A-- 243 (286)
T ss_dssp HHHHHHHHSCHHHHHTTCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCCCCCSEETTEECCCSCEEEEEETTSTTHH-H--
T ss_pred hHHHHHHHhcCCCCCcchHHHHHHHHHHHhcCCcchHHHHHHHHhhhhhhhhhhchhccCCCCEEEEecCCCcccc-H--
Confidence 0000000000000 00000000000001110 0011 13456789999999999999986 2
Q ss_pred HHHHHHHHHcCC-cEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 668 LQYARALREKGV-ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 668 ~~~~~~l~~~g~-~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
..+.+.+... .+++++++++||.+.... ..++.+.|.+||+
T Consensus 244 --~~~~~~~~~~~~~~~~~~~~~gH~~~~e~-p~~~~~~i~~fl~ 285 (286)
T 2qmq_A 244 --VVECNSKLDPTQTSFLKMADSGGQPQLTQ-PGKLTEAFKYFLQ 285 (286)
T ss_dssp --HHHHHHHSCGGGEEEEEETTCTTCHHHHC-HHHHHHHHHHHHC
T ss_pred --HHHHHHHhcCCCceEEEeCCCCCcccccC-hHHHHHHHHHHhc
Confidence 2344444443 589999999999875433 4577888888885
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=151.86 Aligned_cols=213 Identities=17% Similarity=0.135 Sum_probs=130.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHh-CCcEEEEEcCCCCCCCc-----hhhhhcC--
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFG-----EEALQSL-- 532 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~-~G~~vi~~d~rG~~~~g-----~~~~~~~-- 532 (715)
.+.++..++|+|+++++.+++|+|+++||+... ........+.+++ .+..|+.+++++...+. ..+....
T Consensus 23 ~~~~~~~~vylP~~y~~~~~yPvly~l~G~~~~--~~~~~~~~~~l~~~~~~ivV~v~~~~~~~~~~~~R~~d~~~~~~~ 100 (278)
T 2gzs_A 23 GTRHYRVWTAVPNTTAPASGYPILYMLDGNAVM--DRLDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAES 100 (278)
T ss_dssp SSCEEEEEEEEESSCCCTTCEEEEEESSHHHHH--HHCCHHHHHHHTTSCCCEEEEEEESSSSSCCHHHHHHHTCCGGGG
T ss_pred CCceEEEEEECCCCCCCCCCCCEEEEeeChhHH--HHHHHHHHHHhccCCCeEEEEEcCCCCCcCcccccccccCCCCcc
Confidence 367899999999998777889987777774321 1111223455655 67888889987532111 1111000
Q ss_pred --CC--C----CCccchhhHHHHH-----HHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh
Q 005093 533 --PG--K----VGSQDVNDVLTAI-----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599 (715)
Q Consensus 533 --~~--~----~~~~~~~d~~~~i-----~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 599 (715)
+. . .......++.+.+ .++.++..+|++|++|+|+||||++++.++.+ |++|+++++.+|...+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-p~~f~~~~~~s~~~~~~~ 179 (278)
T 2gzs_A 101 RKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRSYYSASPSLGRGY 179 (278)
T ss_dssp TTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSEEEEESGGGSTTH
T ss_pred ccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-ccccCeEEEeCcchhcCc
Confidence 00 0 0001122222222 23334455788899999999999999999999 999999999998643210
Q ss_pred hccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcC--------CchHHHHHH
Q 005093 600 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV--------PVSNGLQYA 671 (715)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v--------~~~~~~~~~ 671 (715)
. ..........+. ..-..|+++.+|+.|..+ +..++.+++
T Consensus 180 ~-----------------------------~~~~~~~~~~~~---~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~ 227 (278)
T 2gzs_A 180 D-----------------------------ALLSRVTAVEPL---QFCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTL 227 (278)
T ss_dssp H-----------------------------HHHHHHHTSCTT---TTTTCEEEEEECCC-----------CHHHHHHHHH
T ss_pred c-----------------------------hHHHHHHHhhcc---CCCCCcEEEEecCccccccccchhhhhHHHHHHHH
Confidence 0 000001111100 112368999999999864 368889999
Q ss_pred HHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 672 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 672 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
++|+++|+++++.++++++|.+... ..+...+.||.+
T Consensus 228 ~~L~~~g~~~~~~~~~g~~H~~~~~----~~~~~~l~fl~~ 264 (278)
T 2gzs_A 228 TILKDKGVNAVFWDFPNLGHGPMFN----ASFRQALLDISG 264 (278)
T ss_dssp HHHHHTTCCEEEEECTTCCHHHHHH----HHHHHHHHHHTT
T ss_pred HHHHcCCCeeEEEEcCCCCccchhH----HHHHHHHHHHhh
Confidence 9999999999999999999975422 223445667754
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-16 Score=155.78 Aligned_cols=208 Identities=17% Similarity=0.157 Sum_probs=126.2
Q ss_pred c-EEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 482 P-LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 482 P-~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
| .||++||.+.. ...|...+..|+ .+|.|+++|+|| +|.+... ....+++ .++.+.+. ++ +
T Consensus 13 ~~~vvllHG~~~~--~~~w~~~~~~L~-~~~~vi~~Dl~G---~G~S~~~------~~~~~~~---~~~~l~~~--l~-~ 74 (258)
T 1m33_A 13 NVHLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPG---FGRSRGF------GALSLAD---MAEAVLQQ--AP-D 74 (258)
T ss_dssp SSEEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTT---STTCCSC------CCCCHHH---HHHHHHTT--SC-S
T ss_pred CCeEEEECCCCCC--hHHHHHHHHHhh-cCcEEEEeeCCC---CCCCCCC------CCcCHHH---HHHHHHHH--hC-C
Confidence 5 79999996544 456777778885 589999999999 6655321 1223444 34444444 34 7
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCc---eeeeccC-------CCCC-CCCCCC---
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW---CYVESYG-------SKGK-DSFTES--- 626 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~~-~~~~~~--- 626 (715)
++.|+||||||.+++.+|.++|++++++|++++................ .+...+. .... ......
T Consensus 75 ~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 1m33_A 75 KAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETA 154 (258)
T ss_dssp SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTH
T ss_pred CeEEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcCCccc
Confidence 8999999999999999999999999999998764211100000000000 0000000 0000 000000
Q ss_pred ----------------CChhh----HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEe
Q 005093 627 ----------------PSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 686 (715)
Q Consensus 627 ----------------~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (715)
+.... ...+...+....+.++++|+|+++|++|..+|...+..+.+.+ ...+++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~i 230 (258)
T 1m33_A 155 RQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLW----PHSESYIF 230 (258)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTC----TTCEEEEE
T ss_pred hhhHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCCEEEEeecCCCCCCHHHHHHHHHhC----ccceEEEe
Confidence 00000 0011112223356778999999999999999987665554433 34789999
Q ss_pred CCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 687 PNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 687 ~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+++||....++ ..++.+.|.+|+++
T Consensus 231 ~~~gH~~~~e~-p~~~~~~i~~fl~~ 255 (258)
T 1m33_A 231 AKAAHAPFISH-PAEFCHLLVALKQR 255 (258)
T ss_dssp TTCCSCHHHHS-HHHHHHHHHHHHTT
T ss_pred CCCCCCccccC-HHHHHHHHHHHHHh
Confidence 99999865443 45788889999865
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-16 Score=158.56 Aligned_cols=227 Identities=12% Similarity=0.055 Sum_probs=138.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
.+|.++....+- +.|+||++||.+.. ...|...+..|++. |.|+++|+|| +|.+..... ......
T Consensus 16 ~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~~~-~~~~~~ 80 (302)
T 1mj5_A 16 IKGRRMAYIDEG--------TGDPILFQHGNPTS--SYLWRNIMPHCAGL-GRLIACDLIG---MGDSDKLDP-SGPERY 80 (302)
T ss_dssp ETTEEEEEEEES--------CSSEEEEECCTTCC--GGGGTTTGGGGTTS-SEEEEECCTT---STTSCCCSS-CSTTSS
T ss_pred ECCEEEEEEEcC--------CCCEEEEECCCCCc--hhhhHHHHHHhccC-CeEEEEcCCC---CCCCCCCCC-CCcccc
Confidence 367777644331 25889999997654 44666667777665 8999999999 554431110 011113
Q ss_pred chhhHHHHHHHHHHcCCCCC-ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCC----------CC-
Q 005093 540 DVNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD----------IP- 607 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~-~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~----------~~- 607 (715)
..++..+.+..+++.- +. ++++|+|||+||.+++.++.++|++++++|+++|............ ..
T Consensus 81 ~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (302)
T 1mj5_A 81 AYAEHRDYLDALWEAL--DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQA 158 (302)
T ss_dssp CHHHHHHHHHHHHHHT--TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHHHh--CCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCchhhhhhhHHHHHHHHHHhccc
Confidence 4666666666666652 34 7899999999999999999999999999999988653110000000 00
Q ss_pred C------c-eeeeccCCCCCCCCCCCCChhhHHH------------------HHhc--------------CchhhccCCC
Q 005093 608 D------W-CYVESYGSKGKDSFTESPSVEDLTR------------------FHSK--------------SPISHISKVK 648 (715)
Q Consensus 608 ~------~-~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~--------------sp~~~~~~i~ 648 (715)
. . .+...+... ........+.... +... +....+.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 235 (302)
T 1mj5_A 159 GEELVLQDNVFVEQVLPG---LILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESP 235 (302)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhcChHHHHHHHHHh---cCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccchhhHHHHHHHHhhhhccC
Confidence 0 0 000000000 0000000000000 0000 1123466789
Q ss_pred CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 649 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+|+|+++|++|.++|++.+..+.+.+ .. +++++ ++||.+... ...++.+.|.+|+++.
T Consensus 236 ~P~l~i~g~~D~~~~~~~~~~~~~~~----~~-~~~~~-~~gH~~~~e-~p~~~~~~i~~fl~~~ 293 (302)
T 1mj5_A 236 IPKLFINAEPGALTTGRMRDFCRTWP----NQ-TEITV-AGAHFIQED-SPDEIGAAIAAFVRRL 293 (302)
T ss_dssp SCEEEEEEEECSSSSHHHHHHHTTCS----SE-EEEEE-EESSCGGGT-CHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCChHHHHHHHHhc----CC-ceEEe-cCcCccccc-CHHHHHHHHHHHHHhh
Confidence 99999999999999987666554433 33 78888 999986644 4568889999999875
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-16 Score=160.15 Aligned_cols=215 Identities=13% Similarity=0.133 Sum_probs=129.5
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|+||++||.+.......|...+..|+ +||.|+++|+|| +|.+.. .......++++.+.+..+++.. ..+
T Consensus 41 ~p~vv~lHG~G~~~~~~~~~~~~~~L~-~~~~vi~~D~~G---~G~S~~----~~~~~~~~~~~~~~l~~~l~~~--~~~ 110 (292)
T 3l80_A 41 NPCFVFLSGAGFFSTADNFANIIDKLP-DSIGILTIDAPN---SGYSPV----SNQANVGLRDWVNAILMIFEHF--KFQ 110 (292)
T ss_dssp SSEEEEECCSSSCCHHHHTHHHHTTSC-TTSEEEEECCTT---STTSCC----CCCTTCCHHHHHHHHHHHHHHS--CCS
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHHh-hcCeEEEEcCCC---CCCCCC----CCcccccHHHHHHHHHHHHHHh--CCC
Confidence 389999997434333446777777776 799999999999 555431 1122235777777777776663 346
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCcee---eeccCC---------CCCCCCCCCCC
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY---VESYGS---------KGKDSFTESPS 628 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------~~~~~~~~~~~ 628 (715)
++.|+|||+||.+++.+|.++|++++++|+++|.................. ...... ...........
T Consensus 111 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (292)
T 3l80_A 111 SYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPTTVMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQ 190 (292)
T ss_dssp EEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCCCHHHHHHCTTSSSSHHHHHHHHTCCSHHHHHHHHHHHHHHHSCHHH
T ss_pred CeEEEEEchhHHHHHHHHHhCchheeeEEEECCCCcchhhhccccccchhHHHHHHHHhccCchhhhHhhccccccCHHH
Confidence 999999999999999999999999999999996543222111000000000 000000 00000000000
Q ss_pred h--------hhHHHHHhcCc---------------hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEE
Q 005093 629 V--------EDLTRFHSKSP---------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 685 (715)
Q Consensus 629 ~--------~~~~~~~~~sp---------------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (715)
. .....+....+ ...+.+ ++|+|+++|++|..++++ + .+.+.+ ...+ ++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-~~P~lii~g~~D~~~~~~-~-~~~~~~----~~~~-~~ 262 (292)
T 3l80_A 191 FKQLWRGYDYCQRQLNDVQSLPDFKIRLALGEEDFKTGISE-KIPSIVFSESFREKEYLE-S-EYLNKH----TQTK-LI 262 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTCCSSCCCCGGGGCCCCCT-TSCEEEEECGGGHHHHHT-S-TTCCCC----TTCE-EE
T ss_pred HHHhHHHHHHHHHHHHhhhhccccchhhhhcchhhhhccCC-CCCEEEEEccCccccchH-H-HHhccC----CCce-ee
Confidence 0 00011111111 123345 799999999999988776 4 443222 3356 89
Q ss_pred eCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 686 FPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 686 ~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
++++||.+... ...++.+.|.+||+++-
T Consensus 263 ~~~~gH~~~~e-~p~~~~~~i~~fl~~~~ 290 (292)
T 3l80_A 263 LCGQHHYLHWS-ETNSILEKVEQLLSNHE 290 (292)
T ss_dssp ECCSSSCHHHH-CHHHHHHHHHHHHHTCT
T ss_pred eCCCCCcchhh-CHHHHHHHHHHHHHhcc
Confidence 99999976543 34578899999998763
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-14 Score=147.83 Aligned_cols=266 Identities=13% Similarity=0.086 Sum_probs=172.6
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGS 92 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 92 (715)
....|+++|+.++.. .+..... ..+...+|||||++|++....+ ..+...+ .+++..+.......+
T Consensus 10 ~d~~v~v~d~~~~~~--~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~d---~~i~v~d~~~~~~~~~~~~~~~v--- 76 (391)
T 1l0q_A 10 ESDNISVIDVTSNKV--TATIPVG-----SNPMGAVISPDGTKVYVANAHS---NDVSIIDTATNNVIATVPAGSSP--- 76 (391)
T ss_dssp TTTEEEEEETTTTEE--EEEEECS-----SSEEEEEECTTSSEEEEEEGGG---TEEEEEETTTTEEEEEEECSSSE---
T ss_pred CCCEEEEEECCCCeE--EEEeecC-----CCcceEEECCCCCEEEEECCCC---CeEEEEECCCCeEEEEEECCCCc---
Confidence 345677766654421 2111111 3478899999999987765432 1454444 466655555443333
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 172 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 172 (715)
..+.|||||++|++.... ...|++||++++
T Consensus 77 -------~~~~~spdg~~l~~~~~~-------------------------------------------~~~v~v~d~~~~ 106 (391)
T 1l0q_A 77 -------QGVAVSPDGKQVYVTNMA-------------------------------------------SSTLSVIDTTSN 106 (391)
T ss_dssp -------EEEEECTTSSEEEEEETT-------------------------------------------TTEEEEEETTTT
T ss_pred -------cceEECCCCCEEEEEECC-------------------------------------------CCEEEEEECCCC
Confidence 789999999999886322 267999999998
Q ss_pred ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 173 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
+.... .........++|+|||+. |+++.. ....|+++|+ .+++
T Consensus 107 ~~~~~--~~~~~~~~~~~~s~dg~~----l~~~~~--------------~~~~v~~~d~-----------------~~~~ 149 (391)
T 1l0q_A 107 TVAGT--VKTGKSPLGLALSPDGKK----LYVTNN--------------GDKTVSVINT-----------------VTKA 149 (391)
T ss_dssp EEEEE--EECSSSEEEEEECTTSSE----EEEEET--------------TTTEEEEEET-----------------TTTE
T ss_pred eEEEE--EeCCCCcceEEECCCCCE----EEEEeC--------------CCCEEEEEEC-----------------CCCc
Confidence 87665 233445678999999998 766652 2347999997 5555
Q ss_pred ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccccc
Q 005093 253 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 332 (715)
Q Consensus 253 ~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~ 332 (715)
.............+.|+|||++|++....+ ..|+++|+.+++....... .
T Consensus 150 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~----------~~v~~~d~~~~~~~~~~~~-------------~------- 199 (391)
T 1l0q_A 150 VINTVSVGRSPKGIAVTPDGTKVYVANFDS----------MSISVIDTVTNSVIDTVKV-------------E------- 199 (391)
T ss_dssp EEEEEECCSSEEEEEECTTSSEEEEEETTT----------TEEEEEETTTTEEEEEEEC-------------S-------
T ss_pred EEEEEecCCCcceEEECCCCCEEEEEeCCC----------CEEEEEECCCCeEEEEEec-------------C-------
Confidence 544433344567899999999887665442 3589999877543211100 0
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 333 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 333 ~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
..+..+.|+|||+.+++.........|+.+|+.+++...............++++++.++++.... ..|.+.++.++
T Consensus 200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d---~~v~v~d~~~~ 276 (391)
T 1l0q_A 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX---NTVSVIDTATN 276 (391)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTT
T ss_pred CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC---CEEEEEECCCC
Confidence 012356799999988877654456789999999888766554443334457888888887665322 45777777654
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=154.80 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=82.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|..++.... +.++.|.||++||.+.. ...|...+..|++. |.|+++|+|| +|.+... ......
T Consensus 29 ~g~~l~y~~~------G~g~~~~vvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---hG~S~~~----~~~~~~ 92 (318)
T 2psd_A 29 LDSFINYYDS------EKHAENAVIFLHGNATS--SYLWRHVVPHIEPV-ARCIIPDLIG---MGKSGKS----GNGSYR 92 (318)
T ss_dssp TTEEEEEEEC------CSCTTSEEEEECCTTCC--GGGGTTTGGGTTTT-SEEEEECCTT---STTCCCC----TTSCCS
T ss_pred CCeEEEEEEc------CCCCCCeEEEECCCCCc--HHHHHHHHHHhhhc-CeEEEEeCCC---CCCCCCC----CCCccC
Confidence 5666653321 22344689999997654 45677777777654 7999999999 6655321 112234
Q ss_pred hhhHHHHHHHHHHcCCCCC-ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCC
Q 005093 541 VNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 593 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~-~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 593 (715)
+++..+.+..+++.- +. +++.|+||||||.+++.+|.++|++++++|++++
T Consensus 93 ~~~~a~dl~~ll~~l--~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~ 144 (318)
T 2psd_A 93 LLDHYKYLTAWFELL--NLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMES 144 (318)
T ss_dssp HHHHHHHHHHHHTTS--CCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhc--CCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEecc
Confidence 667777777666653 34 7899999999999999999999999999998764
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.9e-17 Score=165.05 Aligned_cols=109 Identities=17% Similarity=0.330 Sum_probs=76.5
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
+.|.||++||.+.. ...|...+..|+ +||.|+++|+|| +|.+..............+++.+.+..+++. .+.
T Consensus 24 ~~p~vv~lHG~~~~--~~~~~~~~~~l~-~g~~v~~~D~~G---~G~s~~~~~~~~~~~~~~~~~~~~l~~~l~~--l~~ 95 (304)
T 3b12_A 24 SGPALLLLHGFPQN--LHMWARVAPLLA-NEYTVVCADLRG---YGGSSKPVGAPDHANYSFRAMASDQRELMRT--LGF 95 (304)
Confidence 45789999996654 446777778887 899999999999 5554322100001122233444444333333 234
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcch
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 596 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~ 596 (715)
++++|+|||+||.+++.+|.++|++++++|+++|...
T Consensus 96 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (304)
T 3b12_A 96 ERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPT 132 (304)
Confidence 6899999999999999999999999999999998654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-13 Score=137.56 Aligned_cols=239 Identities=5% Similarity=-0.007 Sum_probs=151.2
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
.....+|||||++|++....+ ..++.++ .+++....+..................+.|||||++|++....
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~---~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----- 161 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVN---SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----- 161 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTT---TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-----
T ss_pred CcceEEECCCCCEEEEEecCC---CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-----
Confidence 356789999999887765532 3676666 5666655555432210000000012578999999988775421
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 202 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i 202 (715)
....|+++|+++++..... .........+.|+|||+. +
T Consensus 162 -------------------------------------~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~s~dg~~----l 199 (353)
T 3vgz_A 162 -------------------------------------KESVIWVVDGGNIKLKTAI-QNTGKMSTGLALDSEGKR----L 199 (353)
T ss_dssp -------------------------------------SSCEEEEEETTTTEEEEEE-CCCCTTCCCCEEETTTTE----E
T ss_pred -------------------------------------CCceEEEEcCCCCceEEEe-cCCCCccceEEECCCCCE----E
Confidence 1266999999998876552 112334667899999997 6
Q ss_pred EEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCcee-cCC----CCccccceeEcCCCCeEEE
Q 005093 203 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LTE----SISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 203 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lt~----~~~~~~~~~~spdg~~l~~ 277 (715)
++.. ....|+++|+ .+++... +.. .........|+|||++|+.
T Consensus 200 ~~~~---------------~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 200 YTTN---------------ADGELITIDT-----------------ADNKILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp EEEC---------------TTSEEEEEET-----------------TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred EEEc---------------CCCeEEEEEC-----------------CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 6654 2247889997 5555432 222 1223456899999998866
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCee
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 357 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 357 (715)
..... ..|+++|+.+++.... .. .. ....+.|+|||+.++++.... .
T Consensus 248 ~~~~~----------~~v~~~d~~~~~~~~~-------~~---~~-----------~~~~~~~s~dg~~l~v~~~~~--~ 294 (353)
T 3vgz_A 248 TDSKA----------AEVLVVDTRNGNILAK-------VA---AP-----------ESLAVLFNPARNEAYVTHRQA--G 294 (353)
T ss_dssp EESSS----------SEEEEEETTTCCEEEE-------EE---CS-----------SCCCEEEETTTTEEEEEETTT--T
T ss_pred EeCCC----------CEEEEEECCCCcEEEE-------EE---cC-----------CCceEEECCCCCEEEEEECCC--C
Confidence 65432 4699999877553211 00 00 123567999999877765433 4
Q ss_pred EEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeC
Q 005093 358 VIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 397 (715)
Q Consensus 358 ~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~ 397 (715)
.|+.+|+.+++...............|+++++.++++...
T Consensus 295 ~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 295 KVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred eEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 7888999998877665544433446788899888877655
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.8e-14 Score=159.13 Aligned_cols=267 Identities=12% Similarity=0.136 Sum_probs=168.3
Q ss_pred eEEeeCCCCceEEEEecCCCCC-CeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 46 SAVVPSPSGSKLLVVRNPENES-PIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
..+.++++|.++.|..+.++.. ..+|.....+..+-+++......+. ...+.+++|||||++|||.....
T Consensus 80 ~~~~p~~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~vllD~n~la~~~---~~~l~~~~~SpDg~~lAy~~~~~------ 150 (693)
T 3iuj_A 80 KEGAPFREGRYHYFFKNDGLQNQNVLWRQQEGKPAEVFLDPNTLSPDG---TTALDQLSFSRDGRILAYSLSLA------ 150 (693)
T ss_dssp EECCCEEETTEEEEEEECSSCSSCEEEEECTTSCCEEEECGGGGSTTS---CCEEEEEEECTTSSEEEEEEECS------
T ss_pred cCCCCEEECCEEEEEEEcCCCceeEEEEeCCCCCcEEEEehhhccCCC---cEEEEEEEECCCCCEEEEEEecC------
Confidence 3445678999999988765332 2344433344444455542211111 11447889999999999987653
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEE
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 204 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~ 204 (715)
|. ....|+++|+++|+.... .........++|| ||+. |+|
T Consensus 151 ----------------------------G~-----~~~~i~v~dl~tg~~~~~--~~~~~k~~~~~Ws-Dg~~----l~y 190 (693)
T 3iuj_A 151 ----------------------------GS-----DWREIHLMDVESKQPLET--PLKDVKFSGISWL-GNEG----FFY 190 (693)
T ss_dssp ----------------------------SC-----CEEEEEEEETTTCSEEEE--EEEEEESCCCEEE-TTTE----EEE
T ss_pred ----------------------------CC-----ceEEEEEEECCCCCCCcc--ccCCceeccEEEe-CCCE----EEE
Confidence 11 237899999999997665 2222224578999 9999 999
Q ss_pred EeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC--ceecCCCCc----cccceeEcCCCCeEEEE
Q 005093 205 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESIS----SAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 205 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~----~~~~~~~spdg~~l~~~ 278 (715)
++..... .+-....++..+||++++ .++. -+.+..... ....+.|||||++|++.
T Consensus 191 ~~~~~~~--~~~~~~~~~~~~v~~~~l-----------------gt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~ 251 (693)
T 3iuj_A 191 SSYDKPD--GSELSARTDQHKVYFHRL-----------------GTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLIS 251 (693)
T ss_dssp EESSCCC---------CCCCEEEEEET-----------------TSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEE
T ss_pred EEecCcc--cccccccCCCcEEEEEEC-----------------CCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEE
Confidence 8754210 000111235568999997 4333 234444333 35679999999999998
Q ss_pred ecCCCCCCCCccccceeEeeecCCCC--CCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCC-
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS- 355 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~--~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~- 355 (715)
+... ....+||++|+.+++ .+.++...+ .....|+++|+.++|.+..++
T Consensus 252 ~~~~-------~~~~~i~~~d~~~~~~~~~~l~~~~~---------------------~~~~~~~~~g~~l~~~t~~~~~ 303 (693)
T 3iuj_A 252 AANS-------TSGNRLYVKDLSQENAPLLTVQGDLD---------------------ADVSLVDNKGSTLYLLTNRDAP 303 (693)
T ss_dssp EESS-------SSCCEEEEEETTSTTCCCEEEECSSS---------------------SCEEEEEEETTEEEEEECTTCT
T ss_pred EccC-------CCCcEEEEEECCCCCCceEEEeCCCC---------------------ceEEEEeccCCEEEEEECCCCC
Confidence 8764 123589999997753 233322110 011127788888999887543
Q ss_pred eeEEEEEECCCCcE---EEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 356 SQVIISVNVSSGEL---LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 356 ~~~l~~~d~~tg~~---~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
..+|+.+|++++.. +.+++..... . .++++++.|++....... ++|+++++.+
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g~-~~l~~~d~~g 359 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMVDAT-ARVEQFDYEG 359 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEETTE-EEEEEECTTS
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEECCe-eEEEEEECCC
Confidence 57899999988765 6777665533 3 899999999887654433 4677777653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.2e-13 Score=135.47 Aligned_cols=273 Identities=11% Similarity=0.095 Sum_probs=163.4
Q ss_pred cccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCcc-EEEEecC
Q 005093 9 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL-EKEFHVP 86 (715)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~ 86 (715)
+..+.....|.++|+.++.. ....... .... .++|||||++|++....+ ..++.++ .+++. .......
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~--~~~~~~~----~~~~-~~~~s~dg~~l~~~~~~~---~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEI--LNQITLG----YDFV-DTAITSDCSNVVVTSDFC---QTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCE--EEEEECC----CCEE-EEEECSSSCEEEEEESTT---CEEEEEECSSSSCEEEEEEEC
T ss_pred EEEecCCCeEEEEeCcccce--eeeEEcc----CCcc-eEEEcCCCCEEEEEeCCC---CeEEEEECCCCceeEEecccC
Confidence 34445556777876655432 2221111 1334 889999999887765532 2677777 55654 4333332
Q ss_pred ccccccccCCCcccc-eeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEE
Q 005093 87 QTVHGSVYADGWFEG-ISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLF 165 (715)
Q Consensus 87 ~~~~~~~~~~~~~~~-~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (715)
... .. +.|||||++|+ +.... + ....|+
T Consensus 83 ~~~----------~~~~~~s~dg~~l~-~~~~~----------------------------------~------~~~~i~ 111 (331)
T 3u4y_A 83 QSS----------MADVDITPDDQFAV-TVTGL----------------------------------N------HPFNMQ 111 (331)
T ss_dssp SSC----------CCCEEECTTSSEEE-ECCCS----------------------------------S------SSCEEE
T ss_pred CCC----------ccceEECCCCCEEE-EecCC----------------------------------C------CcccEE
Confidence 332 45 99999999998 43211 0 114899
Q ss_pred EEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCce-EEEEecccccchhhhhhhh
Q 005093 166 VININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA-LYAVRVSLYKSEASELELK 244 (715)
Q Consensus 166 ~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~ 244 (715)
+||+++++.... .........++|+|||+. |+++.... .. |++++++
T Consensus 112 v~d~~~~~~~~~--~~~~~~~~~~~~spdg~~----l~~~~~~~--------------~~~i~~~~~~------------ 159 (331)
T 3u4y_A 112 SYSFLKNKFIST--IPIPYDAVGIAISPNGNG----LILIDRSS--------------ANTVRRFKID------------ 159 (331)
T ss_dssp EEETTTTEEEEE--EECCTTEEEEEECTTSSC----EEEEEETT--------------TTEEEEEEEC------------
T ss_pred EEECCCCCeEEE--EECCCCccceEECCCCCE----EEEEecCC--------------CceEEEEEEC------------
Confidence 999999887655 233334578999999998 77765211 13 5655541
Q ss_pred ccCCCCCCc----eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 245 ESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 245 ~~~~~~~~~----~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
..+.. ............+.|||||++|++..... ..|+++|+.+++.... +..+.
T Consensus 160 ----~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----------~~v~v~d~~~~~~~~~-------~~~~~ 218 (331)
T 3u4y_A 160 ----ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG----------NSIGILETQNPENITL-------LNAVG 218 (331)
T ss_dssp ----TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT----------TEEEEEECSSTTSCEE-------EEEEE
T ss_pred ----CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC----------CeEEEEECCCCcccce-------eeecc
Confidence 22222 12222233467789999999887776543 3588999876554110 00000
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC---C----CCCc---eeEEEeecCCE
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP---A----ESNF---SWSLLTLDGDN 390 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~---~----~~~~---~~~~~s~~~~~ 390 (715)
.. ..+..+.|+|||+.++++.. +...|+.+|+.+++.+.+.. . .... ....|+++++.
T Consensus 219 ~~----------~~~~~~~~spdg~~l~v~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 286 (331)
T 3u4y_A 219 TN----------NLPGTIVVSRDGSTVYVLTE--STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETK 286 (331)
T ss_dssp CS----------SCCCCEEECTTSSEEEEECS--SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSE
T ss_pred CC----------CCCceEEECCCCCEEEEEEc--CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCE
Confidence 00 13457789999998776543 44568899999998744421 1 1101 12478999998
Q ss_pred EEEEEeCCCCCCeEEEEeec
Q 005093 391 IIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 391 l~~~~~~~~~p~~l~~~~~~ 410 (715)
|+++... ...|.+.++.
T Consensus 287 l~v~~~~---~~~v~v~d~~ 303 (331)
T 3u4y_A 287 LFISANI---SRELKVFTIS 303 (331)
T ss_dssp EEEEETT---TTEEEEEETT
T ss_pred EEEecCC---CCcEEEEEec
Confidence 8776643 2347777764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-13 Score=139.29 Aligned_cols=290 Identities=11% Similarity=0.010 Sum_probs=166.3
Q ss_pred cceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCc-ccc
Q 005093 13 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ-TVH 90 (715)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 90 (715)
.....|+++|+.+... .+.. ++....+....++|||||++|++.... ...++.++ .+++....+.... ..+
T Consensus 8 ~~~~~v~~~d~~~~~~--~~~~--~~~~~~~~~~~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 8 ARPDKLVVIDTEKMAV--DKVI--TIADAGPTPMVPMVAPGGRIAYATVNK---SESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp ETTTEEEEEETTTTEE--EEEE--ECTTCTTCCCCEEECTTSSEEEEEETT---TTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred CCCCeEEEEECCCCcE--EEEE--EcCCCCCCccceEEcCCCCEEEEEeCC---CCeEEEEECCCCCeEeeEEcCCcccc
Confidence 3445677776654321 1111 111100036778999999998776543 23577666 5666555444322 000
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
+ .....+.|||||++|++....... .+++.. .....|+++|++
T Consensus 81 ~-----~~~~~~~~s~dg~~l~~~~~~~~~----------------------------~~~~~~----~~~~~i~v~d~~ 123 (337)
T 1pby_B 81 V-----KSLFGAALSPDGKTLAIYESPVRL----------------------------ELTHFE----VQPTRVALYDAE 123 (337)
T ss_dssp E-----ECTTCEEECTTSSEEEEEEEEEEE----------------------------CSSCEE----ECCCEEEEEETT
T ss_pred c-----ccccceEECCCCCEEEEEeccccc----------------------------cccccc----ccCceEEEEECC
Confidence 0 012689999999999887432100 000000 012779999999
Q ss_pred CCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC
Q 005093 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 250 (715)
Q Consensus 171 ~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (715)
+++.... .........+.|+|||+. |++.. ..|+++|+ .+
T Consensus 124 ~~~~~~~--~~~~~~~~~~~~s~dg~~----l~~~~-----------------~~i~~~d~-----------------~~ 163 (337)
T 1pby_B 124 TLSRRKA--FEAPRQITMLAWARDGSK----LYGLG-----------------RDLHVMDP-----------------EA 163 (337)
T ss_dssp TTEEEEE--EECCSSCCCEEECTTSSC----EEEES-----------------SSEEEEET-----------------TT
T ss_pred CCcEEEE--EeCCCCcceeEECCCCCE----EEEeC-----------------CeEEEEEC-----------------CC
Confidence 8876544 222334667899999998 77762 26889997 55
Q ss_pred CCceecCCCCccccceeEcCCCCeEEEEecCCCCC-------------CCCccccceeEeeecCCCCCCCcccceeeeee
Q 005093 251 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVD-------------SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 317 (715)
Q Consensus 251 ~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~-------------~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~ 317 (715)
++...............|+|||++|++........ ..+......|+++|+.+++...+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----- 238 (337)
T 1pby_B 164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI----- 238 (337)
T ss_dssp TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE-----
T ss_pred CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC-----
Confidence 55443332222233558999999886554332100 000001125788888775542111000
Q ss_pred ceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeC
Q 005093 318 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 397 (715)
Q Consensus 318 ~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~ 397 (715)
....+..+.|+|||+.+++. ...|+.+|+++++...............|+++++.+++. .
T Consensus 239 -------------~~~~~~~~~~s~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~- 298 (337)
T 1pby_B 239 -------------MDVFYFSTAVNPAKTRAFGA-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG-G- 298 (337)
T ss_dssp -------------CSSCEEEEEECTTSSEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE-S-
T ss_pred -------------CCCceeeEEECCCCCEEEEe-----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE-c-
Confidence 00122356899999987766 358999999998876554433333446788998877764 2
Q ss_pred CCCCCeEEEEeecccC
Q 005093 398 PVDVPQVKYGYFVDKA 413 (715)
Q Consensus 398 ~~~p~~l~~~~~~~~~ 413 (715)
....|.++++.+++
T Consensus 299 --~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 299 --ALGDLAAYDAETLE 312 (337)
T ss_dssp --BSSEEEEEETTTCC
T ss_pred --CCCcEEEEECcCCc
Confidence 24568888876543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-13 Score=136.02 Aligned_cols=236 Identities=13% Similarity=0.174 Sum_probs=165.1
Q ss_pred eeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccC
Q 005093 49 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 127 (715)
Q Consensus 49 ~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 127 (715)
.+++||.+|+|.... +...+|.+. +++..++++.. ..-.++++|++|+|+.........
T Consensus 20 ~~~~~g~~iy~~n~~--d~~~ly~~~~dg~~~~~l~~~--------------~~~~i~~~g~~Iyy~~~~~~~~~~---- 79 (302)
T 3s25_A 20 LFCESDGEVFFSNTN--DNGRLYAMNIDGSNIHKLSND--------------TAMYINADKNYVYYVRNNNQKITS---- 79 (302)
T ss_dssp CEEEETTEEEEEEGG--GTTEEEEEETTSCSCEEEEEE--------------EEEEEEECSSEEEEEEECC---------
T ss_pred EEEEeCCEEEEEeCC--CCceEEEEcCCCCCCEEccCC--------------ceeeEEEcCCEEEEEECCCCcccc----
Confidence 356899999998764 345899999 66677777653 134568999999999765421100
Q ss_pred CCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEee
Q 005093 128 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 207 (715)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~ 207 (715)
..+....+..||.+++++++.++|. ... ...|+|+|++ |+|+..
T Consensus 80 --------------------------~~~~~~n~~~Iy~i~~dg~~~~~l~--~~~----~~~~s~~g~~----Iy~~~~ 123 (302)
T 3s25_A 80 --------------------------QTFFSYDRNSLCRIKRNGHGSTVLD--PDP----CIYASLIGNY----IYYLHY 123 (302)
T ss_dssp ---------------------------CCSSCCSEEEEEEETTSCCCEEEE--CSC----EEEEEEETTE----EEEEEE
T ss_pred --------------------------cceeccCCCeEEEEeCCCCcceEee--cCC----ccEEEEeCCE----EEEEee
Confidence 0111113478999999999988883 221 2379999999 999862
Q ss_pred cCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCC
Q 005093 208 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 287 (715)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g 287 (715)
.. .....||++++ ++...++|+.... +.|+|+|++|+|++..
T Consensus 124 ~~-----------~~~~~Iy~~~~-----------------dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g------ 165 (302)
T 3s25_A 124 DT-----------QTATSLYRIRI-----------------DGEEKKKIKNHYL----FTCNTSDRYFYYNNPK------ 165 (302)
T ss_dssp SS-----------SSCEEEEEEET-----------------TSCCCEEEESSCC----CCSEEETTEEEEECTT------
T ss_pred cC-----------CCCceEEEEEC-----------------CCCCeEEEeCCCc----eEeeEECCEEEEEeCC------
Confidence 11 12347999998 7777888887644 5579999999999862
Q ss_pred CccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 005093 288 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 367 (715)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg 367 (715)
..+||++++.++..+.|..+. ... ++.|+++.|+++....+ ..|++++++++
T Consensus 166 ----~~~Iy~~~l~g~~~~~l~~~~----------------------~~~-~~~P~g~~iy~t~~~~~-~~I~~~~ldG~ 217 (302)
T 3s25_A 166 ----NGQLYRYDTASQSEALFYDCN----------------------CYK-PVVLDDTNVYYMDVNRD-NAIVHVNINNP 217 (302)
T ss_dssp ----TCCEEEEETTTTEEEEEECSC----------------------EEE-EEEEETTEEEEEEGGGT-TEEEEECSSSC
T ss_pred ----CceEEEEECCCCCEEEEeCCC----------------------ccc-eeeecCCEEEEEEcCCC-cEEEEEECCCC
Confidence 246999999887655443211 011 24589999998765433 79999999999
Q ss_pred cEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 368 ELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 368 ~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
..+.|+... ...+++++++|++...... ..|++++++..
T Consensus 218 ~~~~Lt~~~----~~~~~~~g~~Iy~~~~~~~--~~i~~~~~DG~ 256 (302)
T 3s25_A 218 NPVVLTEAN----IEHYNVYGSLIFYQRGGDN--PALCVVKNDGT 256 (302)
T ss_dssp CCEECSCSC----EEEEEEETTEEEEEECSSS--CEEEEEETTSC
T ss_pred CeEEEeCCC----cceEEECCCEEEEEECCCC--cEEEEEECCCC
Confidence 988887543 2568999999988754433 78999988644
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=156.39 Aligned_cols=250 Identities=12% Similarity=0.117 Sum_probs=158.0
Q ss_pred CCCCceEEEEecCCCCC-CeEEEEec---CCc---cEEEEecCcc-c-cccccCCCcccceeec-CCCCeEEEEeecCCC
Q 005093 51 SPSGSKLLVVRNPENES-PIQFELWS---QSQ---LEKEFHVPQT-V-HGSVYADGWFEGISWN-SDETLIAYVAEEPSP 120 (715)
Q Consensus 51 Spdg~~la~~~~~~~~~-~~~~~~~~---~~~---~~~~~~~~~~-~-~~~~~~~~~~~~~~wS-pDg~~la~~~~~~~~ 120 (715)
.++|.+++|+++.++.. ..++.... .+. .+.+++.... . ++. -....++|| |||++|||.....
T Consensus 123 ~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~----~~~~~~~~S~PDG~~lAy~~~~~-- 196 (751)
T 2xe4_A 123 YVYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAF----CDVMEVKPAPPEHDLVAFSVDMS-- 196 (751)
T ss_dssp EEETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSC----CEEEEEEECTTTTCEEEEEEESS--
T ss_pred eEECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCe----EEEeeeEecCCCCCEEEEEEeCC--
Confidence 47999999998876443 34554444 443 3444443111 0 111 023679999 9999999987653
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC-ceEeecCCCCCCccceEEEecCCCCCc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
|. ...+||++|+++| +. +. ..-......++|||||+.
T Consensus 197 --------------------------------G~-----~~~~l~v~dl~~g~~~--l~-~~~~~~~~~~~WspDg~~-- 234 (751)
T 2xe4_A 197 --------------------------------GN-----EVYTIEFKRISDPSQT--IA-DKVSGTNGEIVWGPDHTS-- 234 (751)
T ss_dssp --------------------------------SS-----SCEEEEEEETTCTTCC--CC-CCEEEECSCCEECSSTTE--
T ss_pred --------------------------------CC-----ceEEEEEEECCCCCEe--CC-ccccCceeeEEEecCCCE--
Confidence 11 2367999999999 62 21 000112457899999999
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc--eecC--CCCccccceeEcCCCCeE
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLT--ESISSAFFPRFSPDGKFL 275 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lt--~~~~~~~~~~~spdg~~l 275 (715)
|+|+..... .+..+||++++ .++.. +.+. ........+.|||||++|
T Consensus 235 --l~y~~~d~~----------~~~~~v~~~~l-----------------gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l 285 (751)
T 2xe4_A 235 --LFYVTKDET----------LRENKVWRHVM-----------------GKLQSEDVCLYEEHNPLFSAFMYKAADTNTL 285 (751)
T ss_dssp --EEEEEECTT----------CCEEEEEEEET-----------------TSCGGGCEEEEECCCTTCEEEEEECTTSSEE
T ss_pred --EEEEEECCC----------CCCCEEEEEEC-----------------CCCchhcEEEEecCCCceEEEEEECCCCCEE
Confidence 999874221 12348999997 44432 2332 222345678999999999
Q ss_pred EEEecCCCCCCCCccccceeEeeecCCCC--C--CCcccceeeeeeceecCCCCCccccccCCCCCCccccC---CCEEE
Q 005093 276 VFLSAKSSVDSGAHSATDSLHRIDWPTNG--N--FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD---GCTML 348 (715)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~--~--~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d---g~~l~ 348 (715)
+|.+... ...+||++|+.++. . +.++.. .....|+++ |+.|+
T Consensus 286 ~~~~~~~--------~~~~l~~~d~~~~~~~~~~~~l~~~-----------------------~~~~~~s~~~~~g~~l~ 334 (751)
T 2xe4_A 286 CIGSQSP--------ETAEVHLLDLRKGNAHNTLEIVRPR-----------------------EKGVRYDVQMHGTSHLV 334 (751)
T ss_dssp EEEEECS--------SCEEEEEEESSSCTTCCCEEESSCC-----------------------CTTCCEEEEEETTTEEE
T ss_pred EEEecCC--------CCceEEEEECCCCCCCceeEEeecC-----------------------CCCceEEEeeeeCCEEE
Confidence 9998653 24689999998753 2 222211 112345555 88898
Q ss_pred EEeeeC--CeeEEEEEECCC-CcEEE-ecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 005093 349 LSSIWG--SSQVIISVNVSS-GELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 409 (715)
Q Consensus 349 ~~~~~~--~~~~l~~~d~~t-g~~~~-l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~ 409 (715)
+.+... +..+||.+++++ ++.+. +...........++..++.|++.... ....+|+++++
T Consensus 335 ~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~-~g~~~l~~~dl 398 (751)
T 2xe4_A 335 ILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRR-AGLTRIWTMMA 398 (751)
T ss_dssp EEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEE-TTEEEEEEEEC
T ss_pred EEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEe-CCEEEEEEEec
Confidence 888864 678999999976 45555 54444434445677778888776654 34567888885
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=144.66 Aligned_cols=215 Identities=15% Similarity=0.172 Sum_probs=124.6
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.+ ...|...+..|+ .+|.|+++|+|| ||.+... .....+++..+.+..+++. .+.+
T Consensus 27 ~p~vvllHG~~~~--~~~w~~~~~~L~-~~~rvia~DlrG---hG~S~~~-----~~~~~~~~~a~dl~~ll~~--l~~~ 93 (276)
T 2wj6_A 27 GPAILLLPGWCHD--HRVYKYLIQELD-ADFRVIVPNWRG---HGLSPSE-----VPDFGYQEQVKDALEILDQ--LGVE 93 (276)
T ss_dssp SCEEEEECCTTCC--GGGGHHHHHHHT-TTSCEEEECCTT---CSSSCCC-----CCCCCHHHHHHHHHHHHHH--HTCC
T ss_pred CCeEEEECCCCCc--HHHHHHHHHHHh-cCCEEEEeCCCC---CCCCCCC-----CCCCCHHHHHHHHHHHHHH--hCCC
Confidence 4789999996654 567888888886 569999999999 6665321 1123355555555444443 2357
Q ss_pred eEEEEEeChhHHHHHHHHhhC-CCceeEEEecCCcch-----hhh-hccCCCCCCce-----eeec-cCCCC--------
Q 005093 561 KVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCN-----LAL-MVGTTDIPDWC-----YVES-YGSKG-------- 619 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~~-----~~~-~~~~~~~~~~~-----~~~~-~~~~~-------- 619 (715)
++.|+||||||.+++.+|.++ |++++++|++++... ... .........|. .... .....
T Consensus 94 ~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (276)
T 2wj6_A 94 TFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHL 173 (276)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCCCSSCCHHHHHHHHHHHCTTTHHHHHHHHHHHHHTTBCCHHHHHHH
T ss_pred ceEEEEECHHHHHHHHHHHHhCHHhhceEEEecccccCCCchHHHHhhhccCcchHHHHHHHHHHHhhcccchHHHHHHH
Confidence 899999999999999999999 999999999875321 000 00000000010 0000 00000
Q ss_pred CCCCCCCCChhhH----H----HHH-hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCC
Q 005093 620 KDSFTESPSVEDL----T----RFH-SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 690 (715)
Q Consensus 620 ~~~~~~~~~~~~~----~----~~~-~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 690 (715)
...... ...... . .+. ..++...+.++++|+|+++|..|...+. .....+.+.+.-...++++++++|
T Consensus 174 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv~~~~~~~~~~~--~~~~~~~~~~~~p~a~~~~i~~~g 250 (276)
T 2wj6_A 174 LEEMAD-YGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPE--YEKINSDFAEQHPWFSYAKLGGPT 250 (276)
T ss_dssp HTTTTT-CCHHHHHHHHHHHHHHHHHHCCHHHHHHTCSSCCCEEEEECCSCSHH--HHHHHHHHHHHCTTEEEEECCCSS
T ss_pred HHHhhh-cchhhhhhccchhHHHHhhccchhhHHhhcCCCceEEEEecCccchh--HHHHHHHHHhhCCCeEEEEeCCCC
Confidence 000000 000000 0 000 0123345677889999988754433221 111223343333468999999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHH
Q 005093 691 HGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 691 H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
|....+ ...++.+.|.+||++
T Consensus 251 H~~~~e-~P~~~~~~i~~Fl~~ 271 (276)
T 2wj6_A 251 HFPAID-VPDRAAVHIREFATA 271 (276)
T ss_dssp SCHHHH-SHHHHHHHHHHHHHH
T ss_pred Cccccc-CHHHHHHHHHHHHhh
Confidence 976544 355788899999975
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-14 Score=156.10 Aligned_cols=224 Identities=16% Similarity=0.115 Sum_probs=144.5
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCcccccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVY 94 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (715)
...||.+++...+.. .+++..+ .....+|||||+.++|++... +...+|.+ .+|+.++++..+.
T Consensus 89 ~~~l~~~~~~~~g~~-~~l~~~~------~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~-~~g~~~~l~~~~~------- 152 (582)
T 3o4h_A 89 QHALFKVNTSRPGEE-QRLEAVK------PMRILSGVDTGEAVVFTGATE-DRVALYAL-DGGGLRELARLPG------- 152 (582)
T ss_dssp CEEEEEEETTSTTCC-EECTTSC------SBEEEEEEECSSCEEEEEECS-SCEEEEEE-ETTEEEEEEEESS-------
T ss_pred ceEEEEEeccCCCcc-ccccCCC------CceeeeeCCCCCeEEEEecCC-CCceEEEc-cCCcEEEeecCCC-------
Confidence 346777555213322 2443322 244679999999999987654 33333322 5666667665332
Q ss_pred CCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce
Q 005093 95 ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV 174 (715)
Q Consensus 95 ~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 174 (715)
..+.|||||++|++.+.+.. ....||++|+++|+.
T Consensus 153 -----~~~~~spDG~~la~~~~~~~----------------------------------------~~~~i~~~d~~~g~~ 187 (582)
T 3o4h_A 153 -----FGFVSDIRGDLIAGLGFFGG----------------------------------------GRVSLFTSNLSSGGL 187 (582)
T ss_dssp -----CEEEEEEETTEEEEEEEEET----------------------------------------TEEEEEEEETTTCCC
T ss_pred -----ceEEECCCCCEEEEEEEcCC----------------------------------------CCeEEEEEcCCCCCc
Confidence 37999999999999875431 125699999999999
Q ss_pred EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce
Q 005093 175 QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV 254 (715)
Q Consensus 175 ~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (715)
+.+ +........++|||||+. |+ .+..+ ...+||++|+ ++++.+
T Consensus 188 ~~l--~~~~~~~~~~~~SpDG~~----l~-~~~~~------------~~~~i~~~d~-----------------~~~~~~ 231 (582)
T 3o4h_A 188 RVF--DSGEGSFSSASISPGMKV----TA-GLETA------------REARLVTVDP-----------------RDGSVE 231 (582)
T ss_dssp EEE--CCSSCEEEEEEECTTSCE----EE-EEECS------------SCEEEEEECT-----------------TTCCEE
T ss_pred eEe--ecCCCccccceECCCCCE----EE-EccCC------------CeeEEEEEcC-----------------CCCcEE
Confidence 998 455556689999999998 87 43211 2237999997 777777
Q ss_pred ecCCCCcccccee--------EcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCC
Q 005093 255 NLTESISSAFFPR--------FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC 326 (715)
Q Consensus 255 ~lt~~~~~~~~~~--------~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~ 326 (715)
.++........+. ||||| +++|....+ +..+||.+ ++......+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~--------g~~~l~~~----g~~~~~~~~--------------- 283 (582)
T 3o4h_A 232 DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARRE--------GRSAVFID----GERVEAPQG--------------- 283 (582)
T ss_dssp ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEET--------TEEEEEET----TEEECCCSS---------------
T ss_pred EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcC--------CcEEEEEE----CCeeccCCC---------------
Confidence 5555555677788 99999 787777654 12345544 322111100
Q ss_pred ccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 005093 327 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 372 (715)
Q Consensus 327 ~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 372 (715)
.+..+.|+ ||+.++..+.......||.+|+.+ +.+++
T Consensus 284 -------~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 284 -------NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp -------EEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC-EEECC
T ss_pred -------ceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC-ceEEE
Confidence 12345688 887665555555567899999865 66665
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=144.43 Aligned_cols=121 Identities=16% Similarity=0.205 Sum_probs=92.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhC---------CcEEEEEcCCCCCCCchhhhh
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---------GYSLLIVNYRGSLGFGEEALQ 530 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~---------G~~vi~~d~rG~~~~g~~~~~ 530 (715)
-+|..|+.....+. .+..|.||++||.+.+ ...|...+..|++. ||.|+++|+|| ||.+...
T Consensus 75 i~g~~i~~~~~~~~----~~~~~plll~HG~~~s--~~~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl~G---~G~S~~~ 145 (388)
T 4i19_A 75 IDGATIHFLHVRSP----EPDATPMVITHGWPGT--PVEFLDIIGPLTDPRAHGGDPADAFHLVIPSLPG---FGLSGPL 145 (388)
T ss_dssp ETTEEEEEEEECCS----STTCEEEEEECCTTCC--GGGGHHHHHHHHCGGGGTSCGGGCEEEEEECCTT---SGGGCCC
T ss_pred ECCeEEEEEEccCC----CCCCCeEEEECCCCCC--HHHHHHHHHHHhCcccccCCCCCCeEEEEEcCCC---CCCCCCC
Confidence 37888987666553 2456789999997665 55788888888776 99999999999 6665421
Q ss_pred cCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 531 SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 531 ~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
. .......++.+.+..+.+. +..++++++||||||.+++.+|.++|++++++++.+|..
T Consensus 146 ~----~~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 146 K----SAGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp S----SCCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred C----CCCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 1 1123467777777777665 344689999999999999999999999999999998643
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=146.43 Aligned_cols=213 Identities=11% Similarity=0.024 Sum_probs=118.0
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
..|.||++||.+.. ...|..++..|++ ||.|+++|+|| +|.+... .....+++..+.+..+++.. ...
T Consensus 50 ~~~~lvllHG~~~~--~~~~~~l~~~L~~-~~~v~~~D~~G---~G~S~~~-----~~~~~~~~~a~~~~~~l~~~-~~~ 117 (280)
T 3qmv_A 50 APLRLVCFPYAGGT--VSAFRGWQERLGD-EVAVVPVQLPG---RGLRLRE-----RPYDTMEPLAEAVADALEEH-RLT 117 (280)
T ss_dssp CSEEEEEECCTTCC--GGGGTTHHHHHCT-TEEEEECCCTT---SGGGTTS-----CCCCSHHHHHHHHHHHHHHT-TCS
T ss_pred CCceEEEECCCCCC--hHHHHHHHHhcCC-CceEEEEeCCC---CCCCCCC-----CCCCCHHHHHHHHHHHHHHh-CCC
Confidence 34889999996654 5567888888876 99999999999 6665321 12233555555544444432 135
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCcee----EEEecCCcchhhhhcc-CCCCCCcee---eeccCCCC-----CCCCCCC
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDKFV----AAAARNPLCNLALMVG-TTDIPDWCY---VESYGSKG-----KDSFTES 626 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~~~----~~v~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~-----~~~~~~~ 626 (715)
+++.|+||||||.+++.+|.++|+++. .+++.+.......... ........+ ...+.... ...+...
T Consensus 118 ~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (280)
T 3qmv_A 118 HDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDR 197 (280)
T ss_dssp SSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC---------CCT
T ss_pred CCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCChhhhcCHHHHHH
Confidence 789999999999999999999887665 6665544321110000 000000000 00000000 0000000
Q ss_pred CC---hhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCC-CCchHHH
Q 005093 627 PS---VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER-PQSDFES 702 (715)
Q Consensus 627 ~~---~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~-~~~~~~~ 702 (715)
.. ...........+ ..+.++++|+|+++|++|..++.+.+..+.+.+ ....+++++++ ||.... ++...++
T Consensus 198 ~~~~~~~~~~~~~~~~~-~~~~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~g-gH~~~~~~~~~~~~ 272 (280)
T 3qmv_A 198 RLPVLRADLRACERYDW-HPRPPLDCPTTAFSAAADPIATPEMVEAWRPYT---TGSFLRRHLPG-NHFFLNGGPSRDRL 272 (280)
T ss_dssp THHHHHHHHHHHHTCCC-CCCCCBCSCEEEEEEEECSSSCHHHHHTTGGGB---SSCEEEEEEEE-ETTGGGSSHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-cCCCceecCeEEEEecCCCCcChHHHHHHHHhc---CCceEEEEecC-CCeEEcCchhHHHH
Confidence 00 001111111111 124678899999999999999987766554433 23467778875 887654 2333334
Q ss_pred HHHHHHH
Q 005093 703 FLNIGLW 709 (715)
Q Consensus 703 ~~~i~~w 709 (715)
.+.|.+|
T Consensus 273 ~~~i~~~ 279 (280)
T 3qmv_A 273 LAHLGTE 279 (280)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 4444433
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-14 Score=140.47 Aligned_cols=119 Identities=14% Similarity=0.200 Sum_probs=80.4
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
.+|.+++.... +..|.||++||.+.. ...|...+..|+ .+|.|+++|+|| +|.+............
T Consensus 12 ~~~~~~~~~~~--------g~g~~~vllHG~~~~--~~~w~~~~~~l~-~~~~vi~~Dl~G---~G~s~~~~~~~~~~~~ 77 (291)
T 3qyj_A 12 TTEARINLVKA--------GHGAPLLLLHGYPQT--HVMWHKIAPLLA-NNFTVVATDLRG---YGDSSRPASVPHHINY 77 (291)
T ss_dssp CSSCEEEEEEE--------CCSSEEEEECCTTCC--GGGGTTTHHHHT-TTSEEEEECCTT---STTSCCCCCCGGGGGG
T ss_pred cCCeEEEEEEc--------CCCCeEEEECCCCCC--HHHHHHHHHHHh-CCCEEEEEcCCC---CCCCCCCCCCcccccc
Confidence 35677764322 234679999997654 556777777774 589999999999 6554321111001112
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCc
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 594 (715)
..+++.+.+..+++.- ..+++.++||||||.+++.+|.++|++++++|++++.
T Consensus 78 ~~~~~~~~~~~~~~~l--~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 130 (291)
T 3qyj_A 78 SKRVMAQDQVEVMSKL--GYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIA 130 (291)
T ss_dssp SHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCC
T ss_pred CHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECCC
Confidence 3444444444444432 3468999999999999999999999999999998754
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-15 Score=163.71 Aligned_cols=228 Identities=15% Similarity=0.141 Sum_probs=139.8
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHHhCC-cEEEEEcCC-CCCCCchhhhhcCCCC
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYR-GSLGFGEEALQSLPGK 535 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-~~~~~~~~la~~G-~~vi~~d~r-G~~~~g~~~~~~~~~~ 535 (715)
+.|.+ ...+|.|.. ..+++|+||++|||++..+.. ........|+++| ++|+.+||| |..+++...... ...
T Consensus 79 ~edcL--~l~v~~P~~--~~~~~PviV~iHGGg~~~g~~~~~~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~ 153 (489)
T 1qe3_A 79 SEDCL--YVNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAY 153 (489)
T ss_dssp CSCCC--EEEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTS
T ss_pred CCCCC--EEEEEeCCC--CCCCCCEEEEECCCccccCCCCCcccCHHHHHhcCCEEEEecCccCcccccCcccccc-ccC
Confidence 33444 446888874 234589999999988654332 2222345666665 999999999 332343221100 012
Q ss_pred CCccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecCCcchhhhhccCCCCCCce
Q 005093 536 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWC 610 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 610 (715)
.+...+.|+.++++|+.++. ..|+++|.|+|+|+||++++.++... +++|+++|+.+|...+......... ...
T Consensus 154 ~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~-~~~ 232 (489)
T 1qe3_A 154 SDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAAST-AAA 232 (489)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHHH-HHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHHHHH-HHH
Confidence 23334789999999998862 36899999999999999998887643 4789999999997632211000000 000
Q ss_pred eeeccCCC--CCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC
Q 005093 611 YVESYGSK--GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 688 (715)
Q Consensus 611 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (715)
+...++.. ....+...+. + +.+...+++........|.+++++..|..+.+++..+++++.+.+++++.+-..++
T Consensus 233 ~~~~~g~~~~~~~~Lr~~~~-~--~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~vp~~~g~~~~ 309 (489)
T 1qe3_A 233 FLQVLGINESQLDRLHTVAA-E--DLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIPLLIGTTRD 309 (489)
T ss_dssp HHHHHTCCTTCGGGGGTSCH-H--HHHHHHHHHHTSTTCCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTTCCEEEEEETT
T ss_pred HHHHcCCCHHHHHHHHcCCH-H--HHHHHHHHhhhccccccCCccceEeECCeecCcCHHHHHhcCCCCCCCEEEeeecc
Confidence 01111211 1111111111 1 11112222211112335678889999999988988888888877889999999999
Q ss_pred CCccCCC
Q 005093 689 DVHGIER 695 (715)
Q Consensus 689 ~~H~~~~ 695 (715)
++|.+..
T Consensus 310 Eg~~~~~ 316 (489)
T 1qe3_A 310 EGYLFFT 316 (489)
T ss_dssp GGGGTCC
T ss_pred hhHhhcc
Confidence 9998764
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=139.81 Aligned_cols=105 Identities=23% Similarity=0.436 Sum_probs=72.7
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCC-ccchhhHHHHHHHHHHcCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVG-SQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~-~~~~~d~~~~i~~l~~~~~~ 557 (715)
..|.||++||++.+ ...|...+..|++ .+|.|+++|+|| ||.+.... ...+. ...++|+.++++.+... .
T Consensus 37 ~~p~lvllHG~~~~--~~~w~~~~~~L~~~~~~~via~Dl~G---hG~S~~~~-~~~~~~~~~a~dl~~~l~~l~~~--~ 108 (316)
T 3c5v_A 37 EGPVLLLLHGGGHS--ALSWAVFTAAIISRVQCRIVALDLRS---HGETKVKN-PEDLSAETMAKDVGNVVEAMYGD--L 108 (316)
T ss_dssp SSCEEEEECCTTCC--GGGGHHHHHHHHTTBCCEEEEECCTT---STTCBCSC-TTCCCHHHHHHHHHHHHHHHHTT--C
T ss_pred CCcEEEEECCCCcc--cccHHHHHHHHhhcCCeEEEEecCCC---CCCCCCCC-ccccCHHHHHHHHHHHHHHHhcc--C
Confidence 35789999997644 5578888888876 389999999999 66553211 01111 11244555555555321 1
Q ss_pred CCceEEEEEeChhHHHHHHHHhh--CCCceeEEEecCCc
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 594 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~ 594 (715)
.+++.|+||||||.+++.+|.+ +|+ ++++|++++.
T Consensus 109 -~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~ 145 (316)
T 3c5v_A 109 -PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVV 145 (316)
T ss_dssp -CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCC
T ss_pred -CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEccc
Confidence 2689999999999999999985 466 9999998764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.52 E-value=9e-13 Score=132.15 Aligned_cols=246 Identities=10% Similarity=0.071 Sum_probs=171.1
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCC----------CCCeEEEEe-cCCccEEEE
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN----------ESPIQFELW-SQSQLEKEF 83 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~----------~~~~~~~~~-~~~~~~~~~ 83 (715)
...||.++.++. +..+|+.. .+.-++|+|++|+|+..+.+ ....|+.+. ++++.++++
T Consensus 36 ~~~ly~~~~dg~--~~~~l~~~---------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~ 104 (302)
T 3s25_A 36 NGRLYAMNIDGS--NIHKLSND---------TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD 104 (302)
T ss_dssp TTEEEEEETTSC--SCEEEEEE---------EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE
T ss_pred CceEEEEcCCCC--CCEEccCC---------ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee
Confidence 357888665444 44555432 23456899999999987642 134688888 565655554
Q ss_pred ecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCce
Q 005093 84 HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS 163 (715)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 163 (715)
. . ....|+|+|++|+|...... ....
T Consensus 105 ~---~-----------~~~~~s~~g~~Iy~~~~~~~----------------------------------------~~~~ 130 (302)
T 3s25_A 105 P---D-----------PCIYASLIGNYIYYLHYDTQ----------------------------------------TATS 130 (302)
T ss_dssp C---S-----------CEEEEEEETTEEEEEEESSS----------------------------------------SCEE
T ss_pred c---C-----------CccEEEEeCCEEEEEeecCC----------------------------------------CCce
Confidence 3 2 24579999999999741100 2378
Q ss_pred EEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhh
Q 005093 164 LFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELEL 243 (715)
Q Consensus 164 l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 243 (715)
||++++++.+.++|+ .... ..++|+|+. |+|+.. ...+||++++
T Consensus 131 Iy~~~~dGs~~~~lt--~~~~----~~~~~~g~~----iy~t~~--------------g~~~Iy~~~l------------ 174 (302)
T 3s25_A 131 LYRIRIDGEEKKKIK--NHYL----FTCNTSDRY----FYYNNP--------------KNGQLYRYDT------------ 174 (302)
T ss_dssp EEEEETTSCCCEEEE--SSCC----CCSEEETTE----EEEECT--------------TTCCEEEEET------------
T ss_pred EEEEECCCCCeEEEe--CCCc----eEeeEECCE----EEEEeC--------------CCceEEEEEC------------
Confidence 999999998888884 3322 346899999 999863 2247999997
Q ss_pred hccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCC
Q 005093 244 KESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 323 (715)
Q Consensus 244 ~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 323 (715)
.++..++|..... ..| ++|+|++|+|+.... ..+|++++++++..+.|+....
T Consensus 175 -----~g~~~~~l~~~~~--~~~-~~P~g~~iy~t~~~~---------~~~I~~~~ldG~~~~~Lt~~~~---------- 227 (302)
T 3s25_A 175 -----ASQSEALFYDCNC--YKP-VVLDDTNVYYMDVNR---------DNAIVHVNINNPNPVVLTEANI---------- 227 (302)
T ss_dssp -----TTTEEEEEECSCE--EEE-EEEETTEEEEEEGGG---------TTEEEEECSSSCCCEECSCSCE----------
T ss_pred -----CCCCEEEEeCCCc--cce-eeecCCEEEEEEcCC---------CcEEEEEECCCCCeEEEeCCCc----------
Confidence 7777777765322 345 459999999987653 2579999999988777764321
Q ss_pred CCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCe
Q 005093 324 GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQ 403 (715)
Q Consensus 324 ~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~ 403 (715)
+.|+++++.|++..... ...|+++++++...++|.... ...++..+++|+++..... .
T Consensus 228 --------------~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG~~r~~l~~~~----~~~i~i~~d~Iy~td~~~~---~ 285 (302)
T 3s25_A 228 --------------EHYNVYGSLIFYQRGGD-NPALCVVKNDGTGFKELAKGE----FCNINVTSQYVYFTDFVSN---K 285 (302)
T ss_dssp --------------EEEEEETTEEEEEECSS-SCEEEEEETTSCCCEEEEESC----EEEEEECSSEEEEEETTTC---C
T ss_pred --------------ceEEECCCEEEEEECCC-CcEEEEEECCCCccEEeeCCc----cceEEEeCCEEEEEECCCC---e
Confidence 23788999998875533 379999999887788887653 2367788999999874333 3
Q ss_pred EEEEeec
Q 005093 404 VKYGYFV 410 (715)
Q Consensus 404 l~~~~~~ 410 (715)
|++..++
T Consensus 286 i~~~~~d 292 (302)
T 3s25_A 286 EYCTSTQ 292 (302)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 8887754
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-13 Score=133.74 Aligned_cols=218 Identities=14% Similarity=0.142 Sum_probs=133.4
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcC--------CCCCCCchhhhhcC-
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNY--------RGSLGFGEEALQSL- 532 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~--------rG~~~~g~~~~~~~- 532 (715)
...+...+|+|++ ..++.|+||.+||+... ..+||+|+.+++ +|+.++|. |.+..
T Consensus 89 s~~~~~~i~lP~~--~~~p~Pvii~i~~~~~~-------------~~~G~a~~~~~~~~v~~~~~~gs~g~g~-f~~ly~ 152 (375)
T 3pic_A 89 SISFTVTITYPSS--GTAPYPAIIGYGGGSLP-------------APAGVAMINFNNDNIAAQVNTGSRGQGK-FYDLYG 152 (375)
T ss_dssp EEEEEEEEECCSS--SCSSEEEEEEETTCSSC-------------CCTTCEEEEECHHHHSCCSSGGGTTCSH-HHHHHC
T ss_pred eeEEEEEEECCCC--CCCCccEEEEECCCccc-------------cCCCeEEEEecccccccccCCCCcccee-cccccC
Confidence 3568889999974 35788999999985322 357999999986 55555665 33221
Q ss_pred -CCCCCccc--hhhHHHHHHHHHHcC--CCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc------
Q 005093 533 -PGKVGSQD--VNDVLTAIDHVIDMG--LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------ 601 (715)
Q Consensus 533 -~~~~~~~~--~~d~~~~i~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~------ 601 (715)
...++... ..++.++|++|..++ .+|++||+++|||+||..++++++.. ++|+++|..++.++-....
T Consensus 153 ~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~g~~G~~~~R~~~~~ 231 (375)
T 3pic_A 153 SSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQESGAGGSACWRISDYL 231 (375)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESCCTTTTSCHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccCCCCchhhhhhhhhh
Confidence 22344333 358999999999987 89999999999999999999999975 5899999988654322111
Q ss_pred ---cCC-C-------CCCceeeeccCCCCCCCCCCCC---ChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHH
Q 005093 602 ---GTT-D-------IPDWCYVESYGSKGKDSFTESP---SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG 667 (715)
Q Consensus 602 ---~~~-~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~ 667 (715)
+.. . ...|. ...+ ..+.... ..+..+...... ..|+|++.| .|..+++...
T Consensus 232 ~~~Ge~v~~~~~~~~e~~Wf-~~~~-----~~y~~~~~~lP~D~h~L~ALiA--------PRPllv~~g-~D~w~~~~g~ 296 (375)
T 3pic_A 232 KSQGANIQTASEIIGEDPWF-STTF-----NSYVNQVPVLPFDHHSLAALIA--------PRGLFVIDN-NIDWLGPQSC 296 (375)
T ss_dssp HHTTCCCCCHHHHTTTCSCS-CGGG-----GGTTTCGGGSSCCHHHHHHTST--------TSEEEEECC-CCGGGCHHHH
T ss_pred cccCccccccccccCccccc-ccch-----hhhcccccccCcCHHHHHHHhC--------CceEEEecC-CCcccCcHHH
Confidence 000 0 00111 0000 0010000 001111111111 258999999 9999988766
Q ss_pred HHHHHHH----HHcCC--cEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 668 LQYARAL----REKGV--ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 668 ~~~~~~l----~~~g~--~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
...+.++ +..|. .+.+....+.+|... +. ...+++.+||++||+
T Consensus 297 ~~~~~~a~~VY~~lG~~d~~~~~~~ggH~Hc~f-p~---~~~~~~~~F~~k~L~ 346 (375)
T 3pic_A 297 FGCMTAAHMAWQALGVSDHMGYSQIGAHAHCAF-PS---NQQSQLTAFVQKFLL 346 (375)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEECCSCCSTTCC-CG---GGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCccceEEEeeCCCccccC-CH---HHHHHHHHHHHHHhC
Confidence 5444444 33455 455543323344222 22 234789999999985
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-14 Score=144.57 Aligned_cols=208 Identities=14% Similarity=0.131 Sum_probs=130.6
Q ss_pred CCceEEEEEEecCCCCC-CCCCcEEEEEcCCCCCCCCccchHHHHHHHh------CCcEEEEEcCCCCCCCchhhhhc--
Q 005093 461 AQKPFEAIFVSSSHKKD-CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS------VGYSLLIVNYRGSLGFGEEALQS-- 531 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~-~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~------~G~~vi~~d~rG~~~~g~~~~~~-- 531 (715)
-|.+.+.++|+|+++++ .+++|+|+++||... ..........++. .+++|++++... ...++...
T Consensus 22 l~~~r~~~VylP~~y~~~~~~yPVlylldG~~~---f~~~~~~~~~l~~~~~~~~~~~IvV~i~~~~---R~~dytp~~~ 95 (331)
T 3gff_A 22 LKETREYVIALPEGYAQSLEAYPVVYLLDGEDQ---FDHMASLLQFLSQGTMPQIPKVIIVGIHNTN---RMRDYTPTHT 95 (331)
T ss_dssp TTEEEEEEEECCTTGGGSCCCEEEEEESSHHHH---HHHHHHHHHHHTCSSSCSSCCCEEEEECCSS---HHHHSCSSCC
T ss_pred CCCeEEEEEEeCCCCCCCCCCccEEEEecChhh---hHHHHHHHHHHHhhhhcCCCCEEEEEECCCC---cccccCCCcc
Confidence 36778899999999865 688999999999421 1112223445543 368899988621 11111000
Q ss_pred ------------CCCCCCccchhhHH--HHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchh
Q 005093 532 ------------LPGKVGSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 597 (715)
Q Consensus 532 ------------~~~~~~~~~~~d~~--~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~ 597 (715)
.+...+.....+.. +.+.++.++..++..+ +|+||||||+++++++.++|++|+++++++|.+.+
T Consensus 96 ~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~~F~~~~~~S~~~w~ 174 (331)
T 3gff_A 96 LVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRPLFSAYLALDTSLWF 174 (331)
T ss_dssp SBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCSSCSEEEEESCCTTT
T ss_pred ccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCchhhheeeEeCchhcC
Confidence 00001111122222 3455666666566555 79999999999999999999999999999996421
Q ss_pred hhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCC-------cCCchHHHHH
Q 005093 598 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-------RVPVSNGLQY 670 (715)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~-------~v~~~~~~~~ 670 (715)
. .......... .+........|+++.+|+.|. .++.+.+.++
T Consensus 175 ~-----------------------------~~~~~~~~~~--~~~~~~~~~~~l~l~~G~~d~~~~~~~~~~~~~~~~~l 223 (331)
T 3gff_A 175 D-----------------------------SPHYLTLLEE--RVVKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNLAF 223 (331)
T ss_dssp T-----------------------------TTHHHHHHHH--HHHHCCCSSEEEEEEECCCSEETTTEECCHHHHHHHHH
T ss_pred C-----------------------------hHHHHHHHHH--HhhcccCCCCeEEEEeCCCCCCCccchHHHHHHHHHHH
Confidence 1 0000111110 011112245799999999998 4667788999
Q ss_pred HHHHHHc---CCcEEEEEeCCCCccCCCCCchHHHHHHHHHHH
Q 005093 671 ARALREK---GVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 671 ~~~l~~~---g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 710 (715)
++.|++. |.++++.++|+++|+... ...+...++||
T Consensus 224 ~~~Lk~~~~~g~~~~~~~~pg~~H~sv~----~~~~~~~l~~l 262 (331)
T 3gff_A 224 ADKLTKLAPKGLGFMAKYYPEETHQSVS----HIGLYDGIRHL 262 (331)
T ss_dssp HHHHHHHCCTTEEEEEEECTTCCTTTHH----HHHHHHHHHHH
T ss_pred HHHHHhccCCCceEEEEECCCCCccccH----HHHHHHHHHHH
Confidence 9999987 678999999999997542 23344444554
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-11 Score=128.76 Aligned_cols=250 Identities=12% Similarity=0.119 Sum_probs=157.9
Q ss_pred cceEEeeCCCCceEEEEecCCC---CCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPEN---ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
....+++||||++|++....+. ....++.++ .+++..+.+...... ..+.|+|||++|++....
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~-- 109 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKP----------FGATINNTTQTLWFGNTV-- 109 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCC----------CSEEEETTTTEEEEEETT--
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCc----------ceEEECCCCCEEEEEecC--
Confidence 4677899999999976654321 133566666 566666665554333 689999999988775332
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCC--------CccceEEE
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS--------LSVGQVVW 191 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~--------~~~~~~~~ 191 (715)
...|+++|+++++.......... .....+.|
T Consensus 110 -----------------------------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (353)
T 3vgz_A 110 -----------------------------------------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA 148 (353)
T ss_dssp -----------------------------------------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE
T ss_pred -----------------------------------------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE
Confidence 25799999998886443101111 12466899
Q ss_pred ecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC-CCccccceeEcC
Q 005093 192 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSP 270 (715)
Q Consensus 192 spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~~~~sp 270 (715)
+|||+. +++.... ....|+++|+ .+++...... .......+.|+|
T Consensus 149 s~dg~~----l~~~~~~-------------~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 149 DDATNT----VYISGIG-------------KESVIWVVDG-----------------GNIKLKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp ETTTTE----EEEEEES-------------SSCEEEEEET-----------------TTTEEEEEECCCCTTCCCCEEET
T ss_pred CCCCCE----EEEEecC-------------CCceEEEEcC-----------------CCCceEEEecCCCCccceEEECC
Confidence 999997 6665421 2246999997 5665544333 333467899999
Q ss_pred CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEE
Q 005093 271 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 350 (715)
Q Consensus 271 dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~ 350 (715)
||++|++.... ..|+++|+.+++.... +....... ......+.|+|||+.+++.
T Consensus 195 dg~~l~~~~~~-----------~~i~~~d~~~~~~~~~----------~~~~~~~~-----~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 195 EGKRLYTTNAD-----------GELITIDTADNKILSR----------KKLLDDGK-----EHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTTEEEEECTT-----------SEEEEEETTTTEEEEE----------EECCCSSS-----CCCEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCeEEEE----------EEcCCCCC-----CcccceEEECCCCCEEEEE
Confidence 99988776542 2588999877553211 00000000 0012346799999988766
Q ss_pred eeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 351 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 351 ~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
.. +...|+.+|+.+++.......... ....++++++.+++..... ..|.++++.++
T Consensus 249 ~~--~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~---~~v~~~d~~~~ 304 (353)
T 3vgz_A 249 DS--KAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQA---GKVSVIDAKSY 304 (353)
T ss_dssp ES--SSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTT---TEEEEEETTTT
T ss_pred eC--CCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCC---CeEEEEECCCC
Confidence 53 345788999998887654433222 3367899999877765332 46777776543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-12 Score=130.91 Aligned_cols=283 Identities=13% Similarity=0.059 Sum_probs=152.8
Q ss_pred EEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCC--CCCeEEEEe-cCCccEEEEecCcccccc
Q 005093 16 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN--ESPIQFELW-SQSQLEKEFHVPQTVHGS 92 (715)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 92 (715)
..|+++.++....+..+++.. +.......+|||||++|++....++ +.-.+|.+. .+|+.+.+........
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~----~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~-- 100 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDA----EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA-- 100 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEE----ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS--
T ss_pred CCEEEEEEeCCCCCEEEeecc----cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC--
Confidence 356666676555444443322 2255677899999999988876532 333446666 3466666554322110
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC-
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS- 171 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~- 171 (715)
....+++ ||++|+..... ...|.+|++++
T Consensus 101 -----~p~~~~~--dg~~l~~~~~~-------------------------------------------~~~v~~~~~~~~ 130 (361)
T 3scy_A 101 -----DPCYLTT--NGKNIVTANYS-------------------------------------------GGSITVFPIGQD 130 (361)
T ss_dssp -----CEEEEEE--CSSEEEEEETT-------------------------------------------TTEEEEEEBCTT
T ss_pred -----CcEEEEE--CCCEEEEEECC-------------------------------------------CCEEEEEEeCCC
Confidence 0134555 89887765321 15577787753
Q ss_pred CceEeec---CCCC---------CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 172 GEVQAVK---GIPK---------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 172 g~~~~l~---~~~~---------~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
+....+. ...+ ......++|+|||+. |+++.. ....|++++++
T Consensus 131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~----l~~~~~--------------~~~~v~v~~~~------- 185 (361)
T 3scy_A 131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY----LLADDL--------------GTDQIHKFNIN------- 185 (361)
T ss_dssp SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE----EEEEET--------------TTTEEEEEEEC-------
T ss_pred CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE----EEEEeC--------------CCCEEEEEEEc-------
Confidence 3222220 0000 112345899999997 776542 12246666541
Q ss_pred hhhhhccCCCCC----C-c-------eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC
Q 005093 240 ELELKESSSEDL----P-V-------VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 307 (715)
Q Consensus 240 ~~~~~~~~~~~~----~-~-------~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~ 307 (715)
..++ + . ............++|||||++|++....+ ..|.++++.++....
T Consensus 186 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----------~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 186 --------PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG----------GTVIAFRYADGMLDE 247 (361)
T ss_dssp --------TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT----------CEEEEEEEETTEEEE
T ss_pred --------CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC----------CeEEEEEecCCceEE
Confidence 0222 1 1 11222233467799999999887766442 247788876543211
Q ss_pred cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCcEEEecC--CCCCceeEEE
Q 005093 308 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITP--AESNFSWSLL 384 (715)
Q Consensus 308 lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~-~~~~~l~~~d~~tg~~~~l~~--~~~~~~~~~~ 384 (715)
+. .+...... + .....++|+|||+.|+++... .+...+|.++..+|+.+.+.. .........|
T Consensus 248 ~~-------~~~~~~~~--~-----~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~ 313 (361)
T 3scy_A 248 IQ-------TVAADTVN--A-----QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFII 313 (361)
T ss_dssp EE-------EEESCSSC--C-----CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEE
T ss_pred eE-------EEecCCCC--C-----CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEE
Confidence 11 00000000 0 012367799999988776655 566678878777787655432 1112334678
Q ss_pred eecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 385 TLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 385 s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+++++.|++..... ..-.+|.++..++
T Consensus 314 spdg~~l~~~~~~~-~~v~v~~~d~~~g 340 (361)
T 3scy_A 314 TPNGKYLLVACRDT-NVIQIFERDQATG 340 (361)
T ss_dssp CTTSCEEEEEETTT-TEEEEEEECTTTC
T ss_pred CCCCCEEEEEECCC-CCEEEEEEECCCC
Confidence 99998887665332 2223444554333
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-11 Score=127.91 Aligned_cols=268 Identities=15% Similarity=0.097 Sum_probs=146.4
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGS 92 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 92 (715)
....|++++++..+. ...+...+ ....+...+|||||++|++....+ +.-.+|.+. .+++...+.......
T Consensus 13 ~~~~v~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~--- 84 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGA-LTLTQVVD---VPGQVQPMVVSPDKRYLYVGVRPE-FRVLAYRIAPDDGALTFAAESALPG--- 84 (343)
T ss_dssp GGTEEEEEEECTTSC-EEEEEEEE---CSSCCCCEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEEEEEEEECSS---
T ss_pred CCCeEEEEEECCCCc-EEEeeeEe---cCCCCceEEECCCCCEEEEeecCC-CeEEEEEecCCCCceeeccccccCC---
Confidence 344667766754321 11121111 124567789999999998876643 333344444 355555444332111
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 172 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 172 (715)
....+.|||||++|++.... ...|++||++.+
T Consensus 85 -----~~~~~~~s~dg~~l~~~~~~-------------------------------------------~~~i~~~d~~~~ 116 (343)
T 1ri6_A 85 -----SLTHISTDHQGQFVFVGSYN-------------------------------------------AGNVSVTRLEDG 116 (343)
T ss_dssp -----CCSEEEECTTSSEEEEEETT-------------------------------------------TTEEEEEEEETT
T ss_pred -----CCcEEEEcCCCCEEEEEecC-------------------------------------------CCeEEEEECCCC
Confidence 12789999999998776432 256888888433
Q ss_pred ---ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCC
Q 005093 173 ---EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 249 (715)
Q Consensus 173 ---~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (715)
+.... .........++|+|||+. |+.... ....|+++|+ .
T Consensus 117 ~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~~~~~--------------~~~~v~~~d~-----------------~ 159 (343)
T 1ri6_A 117 LPVGVVDV--VEGLDGCHSANISPDNRT----LWVPAL--------------KQDRICLFTV-----------------S 159 (343)
T ss_dssp EEEEEEEE--ECCCTTBCCCEECTTSSE----EEEEEG--------------GGTEEEEEEE-----------------C
T ss_pred cccccccc--ccCCCCceEEEECCCCCE----EEEecC--------------CCCEEEEEEe-----------------c
Confidence 33332 223334667899999997 655431 1236888886 3
Q ss_pred C-CCcee-----cCC-CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCC--CCCCCcccceeeeeecee
Q 005093 250 D-LPVVN-----LTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 250 ~-~~~~~-----lt~-~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~--~~~~~lt~~~~~~~~~~~ 320 (715)
+ ++... +.. .........|+|||++|++....+ ..+.++++.. +....+ ......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~----------~~i~~~~~~~~~g~~~~~-----~~~~~~- 223 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN----------SSVDVWELKDPHGNIECV-----QTLDMM- 223 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT----------TEEEEEESSCTTSCCEEE-----EEEECS-
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC----------CEEEEEEecCCCCcEEEE-----eecccc-
Confidence 3 44332 222 222456688999999887776442 2577778753 221111 000000
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec--CCCCCceeEEEeecCCEEEEEE
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~--~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
.. .+.+ ......++|+|||+.++++....+...+|.++..+++.+.+. ..........|+++++.|++..
T Consensus 224 -~~--~~~~--~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 224 -PE--NFSD--TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp -CT--TCCS--CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred -Cc--cccc--cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEec
Confidence 00 0000 001224789999998877654445444554443355544432 2222234467888888777654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-12 Score=129.63 Aligned_cols=268 Identities=12% Similarity=0.050 Sum_probs=141.0
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccC
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYA 95 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 95 (715)
.|+++.++....+..+++. .........++|||||+ |+++...+ +...++.+. .+++.+.+.......
T Consensus 17 ~i~v~~~d~~tg~~~~~~~---~~~~~~p~~~a~spdg~-l~~~~~~~-~~~~v~~~~~~~g~~~~~~~~~~~~------ 85 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGL---LAATQNPTYLALSAKDC-LYSVDKED-DEGGIAAWQIDGQTAHKLNTVVAPG------ 85 (347)
T ss_dssp EEEEEEEETTTTEEEEEEE---EEECSCCCCEEECTTCE-EEEEEEET-TEEEEEEEEEETTEEEEEEEEEEES------
T ss_pred CEEEEEEcCCCCeEEEeee---eeccCCcceEEEccCCe-EEEEEecC-CCceEEEEEecCCcEEEeeeeecCC------
Confidence 4555556654433333221 11225567789999999 76665432 233455544 556555544321111
Q ss_pred CCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc-CCce
Q 005093 96 DGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEV 174 (715)
Q Consensus 96 ~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~ 174 (715)
.....++|||||++|++.... ...+.+|+++ +|..
T Consensus 86 -~~p~~~a~spdg~~l~~~~~~-------------------------------------------~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 86 -TPPAYVAVDEARQLVYSANYH-------------------------------------------KGTAEVMKIAADGAL 121 (347)
T ss_dssp -CCCSEEEEETTTTEEEEEETT-------------------------------------------TTEEEEEEECTTSCE
T ss_pred -CCCEEEEECCCCCEEEEEeCC-------------------------------------------CCEEEEEEeCCCCCe
Confidence 112689999999998876422 1457777774 4444
Q ss_pred EeecC--CCC--------CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhh
Q 005093 175 QAVKG--IPK--------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 244 (715)
Q Consensus 175 ~~l~~--~~~--------~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (715)
+.+.. ..+ ......++|+|||+ ++.+.. ....|+++++.
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-----l~v~~~--------------~~~~v~~~~~~------------ 170 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-----LAVIDL--------------GSDKVYVYNVS------------ 170 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-----EEEEET--------------TTTEEEEEEEC------------
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCc-----EEEEeC--------------CCCEEEEEEEC------------
Confidence 43310 111 11244689999998 444331 22367788861
Q ss_pred ccCCCCCCceecC---CC-CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCC--CCCCCcccceeeeeec
Q 005093 245 ESSSEDLPVVNLT---ES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDVIPV 318 (715)
Q Consensus 245 ~~~~~~~~~~~lt---~~-~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~--~~~~~lt~~~~~~~~~ 318 (715)
.+++...+. .. ......++|||||++|+++.... ..+.++++.. +....+. .+
T Consensus 171 ----~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~----------~~v~v~~~~~~~g~~~~~~-------~~ 229 (347)
T 3hfq_A 171 ----DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS----------SQIASLKYDTQTGAFTQLG-------IV 229 (347)
T ss_dssp ----TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT----------TEEEEEEEETTTTEEEEEE-------EE
T ss_pred ----CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC----------CEEEEEEecCCCCceEEee-------ee
Confidence 244443221 11 22355689999999887766543 2355555543 3221110 00
Q ss_pred eecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe---cCCCCCceeEEEeecCCEEEEEE
Q 005093 319 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI---TPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l---~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
..... .+.+ ......++|+|||+.||++....+...+|.++. +|..+.+ ...........|+++++.|++..
T Consensus 230 ~~~~~--~~~~--~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 230 KTIPA--DYTA--HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA-DGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp ESSCT--TCCS--CCEEEEEEECTTSCEEEEEEETTTEEEEEEECG-GGCEEEEEEEECSSSCCCEEEECTTSSEEEEEE
T ss_pred eecCC--CCCC--CCcceeEEECCCCCEEEEEeCCCCEEEEEEECC-CCcEEEeEEEecCCCCcCeEEECCCCCEEEEEE
Confidence 00000 0000 001335779999998877766555555555543 3443333 22122234467899998887655
Q ss_pred e
Q 005093 396 S 396 (715)
Q Consensus 396 ~ 396 (715)
.
T Consensus 305 ~ 305 (347)
T 3hfq_A 305 Q 305 (347)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.3e-13 Score=132.63 Aligned_cols=216 Identities=15% Similarity=0.074 Sum_probs=131.9
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcC--------CCCCCCchhhhhcCC-
Q 005093 463 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNY--------RGSLGFGEEALQSLP- 533 (715)
Q Consensus 463 ~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~--------rG~~~~g~~~~~~~~- 533 (715)
..+.+.+|+|++ .++.|+||.+||+.. ...+||+|+.+++ +|+.++|. +.....
T Consensus 123 ~sf~~~i~lP~g---~~P~Pvii~~~~~~~-------------~~~~G~A~i~f~~~~va~d~~~gsrG~g~-f~~ly~~ 185 (433)
T 4g4g_A 123 ISFSASIRKPSG---AGPFPAIIGIGGASI-------------PIPSNVATITFNNDEFGAQMGSGSRGQGK-FYDLFGR 185 (433)
T ss_dssp EEEEEEEECCSS---SCCEEEEEEESCCCS-------------CCCTTSEEEEECHHHHSCCSSGGGTTCSH-HHHHHCT
T ss_pred EEEEEEEECCCC---CCCccEEEEECCCcc-------------ccCCCeEEEEeCCcccccccCCCcCCccc-cccccCC
Confidence 457899999973 578999999997421 1367999999987 34445665 433222
Q ss_pred -CCCCccc--hhhHHHHHHHHHH----cCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc----
Q 005093 534 -GKVGSQD--VNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG---- 602 (715)
Q Consensus 534 -~~~~~~~--~~d~~~~i~~l~~----~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~---- 602 (715)
..++... ..++.+++++|.. +..+|++||+++|||+||..++++++.. ++|+++|..++..+......
T Consensus 186 ~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~sg~~G~~~~R~~~~ 264 (433)
T 4g4g_A 186 DHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQESGAGGAACWRISDQ 264 (433)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESCCTTTTSCHHHHHH
T ss_pred ccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEecCCCCchhhhhhchh
Confidence 2344332 3588999999999 7889999999999999999999999975 58999999887554221110
Q ss_pred ---C-CCC---------CCceeeeccCCCCCCCCCCCC---ChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchH
Q 005093 603 ---T-TDI---------PDWCYVESYGSKGKDSFTESP---SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN 666 (715)
Q Consensus 603 ---~-~~~---------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~ 666 (715)
. ... ..|. ... ...+.... ..+..+...... ..|+|++.| .|..+++..
T Consensus 265 ~~~~Ge~v~~~~~~~ge~~Wf-~~~-----f~~y~~~~~~LPfD~heL~ALiA--------PRPlLv~~g-~D~w~~p~g 329 (433)
T 4g4g_A 265 QKAAGANIQTAAQIITENPWF-SRN-----FDPHVNSITSVPQDHHLLAALIV--------PRGLAVFEN-NIDWLGPVS 329 (433)
T ss_dssp HHHTTCCCCCHHHHTTTCCCS-CTT-----TGGGTTCGGGSSCCGGGHHHHHT--------TSEEEEEEC-CCTTTCHHH
T ss_pred hcccCcchhhhhcccCCcccc-chh-----hHhhccccccCCcCHHHHHHhhC--------CceEEEecC-CCCcCCcHH
Confidence 0 000 0110 000 00010000 001111111111 258999999 898888776
Q ss_pred HHHHHHHHH----HcCC--cEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 667 GLQYARALR----EKGV--ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 667 ~~~~~~~l~----~~g~--~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
....+.+++ ..|. .+.+....+.+|... +.. ....+.+||++||+
T Consensus 330 ~~~a~~aa~~VY~~lGa~d~l~~~~~ggH~Hc~f-p~~---~r~~~~~F~~k~Lk 380 (433)
T 4g4g_A 330 TTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQF-PSS---QNQDLNSYINYFLL 380 (433)
T ss_dssp HHHHHHHHHHHHHHHTCGGGEEEEECCSSCTTCC-CGG---GHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCccceEEEeeCCCCcccC-CHH---HHHHHHHHHHHHhC
Confidence 554444432 3354 466655444445322 222 34778899999985
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=127.42 Aligned_cols=208 Identities=13% Similarity=0.075 Sum_probs=132.2
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCc--EEEEEcCCCCCCCchhhhh-cC-------------CCC-CCc--cch
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQ-SL-------------PGK-VGS--QDV 541 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~--~vi~~d~rG~~~~g~~~~~-~~-------------~~~-~~~--~~~ 541 (715)
.+.||++||.... ...|..++..|+++|+ .|+.+|.++ +|..... .. ..+ ... ...
T Consensus 6 ~~pvvliHG~~~~--~~~~~~l~~~L~~~g~~~~vi~~dv~~---~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~ 80 (249)
T 3fle_A 6 TTATLFLHGYGGS--ERSETFMVKQALNKNVTNEVITARVSS---EGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENA 80 (249)
T ss_dssp CEEEEEECCTTCC--GGGTHHHHHHHHTTTSCSCEEEEEECS---SCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHH
T ss_pred CCcEEEECCCCCC--hhHHHHHHHHHHHcCCCceEEEEEECC---CCCEEEccccccccCCCeEEEEcCCCCCccHHHHH
Confidence 4568999995443 6688899999999996 588888775 2221000 00 000 001 125
Q ss_pred hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC-----ceeEEEecCCcchhhhhccCCCCCCceeeeccC
Q 005093 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 616 (715)
Q Consensus 542 ~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (715)
+++.++++.+.++. ..+++.++||||||.+++.++.++|. +++.+|++++..+....... ..... .+.
T Consensus 81 ~~l~~~i~~l~~~~--~~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~--~~~~~---~~~ 153 (249)
T 3fle_A 81 YWIKEVLSQLKSQF--GIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNE--NVNEI---IVD 153 (249)
T ss_dssp HHHHHHHHHHHHTT--CCCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSS--CTTTS---CBC
T ss_pred HHHHHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccC--Ccchh---hhc
Confidence 56777788887764 34789999999999999999998863 78999988876653321110 00000 000
Q ss_pred CCCCCCCCCCCC--hhhHHHHHhcCchhhccCCCCcEEEEeeC------CCCcCCchHHHHHHHHHHHcCCcEEEEEeCC
Q 005093 617 SKGKDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN 688 (715)
Q Consensus 617 ~~~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~Lii~G~------~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (715)
. .+.|. ......+... ...+.+..+|+|.|+|+ .|..||...+..+...++......+.+.+.|
T Consensus 154 ~------~g~p~~~~~~~~~l~~~--~~~~p~~~~~vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~~~~y~e~~v~g 225 (249)
T 3fle_A 154 K------QGKPSRMNAAYRQLLSL--YKIYCGKEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGSTKSYQEMKFKG 225 (249)
T ss_dssp T------TCCBSSCCHHHHHTGGG--HHHHTTTTCEEEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTCSSEEEEEEEES
T ss_pred c------cCCCcccCHHHHHHHHH--HhhCCccCCeEEEEeccCCCCCCCCCcccHHHHHHHHHHHhhCCCceEEEEEeC
Confidence 0 01111 1122222221 23345467899999998 6999999988887777776666667677766
Q ss_pred --CCccCCCCCchHHHHHHHHHHH
Q 005093 689 --DVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 689 --~~H~~~~~~~~~~~~~~i~~wl 710 (715)
+.|..... + .++.+.|.+||
T Consensus 226 ~~a~Hs~l~~-n-~~V~~~I~~FL 247 (249)
T 3fle_A 226 AKAQHSQLHE-N-KDVANEIIQFL 247 (249)
T ss_dssp GGGSTGGGGG-C-HHHHHHHHHHH
T ss_pred CCCchhcccc-C-HHHHHHHHHHh
Confidence 88976644 3 36888888887
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-11 Score=125.98 Aligned_cols=240 Identities=9% Similarity=-0.006 Sum_probs=138.6
Q ss_pred EEEEEEEeecCCCCccccccCCCccccccceE-EeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccc
Q 005093 16 KFMLSTVISKENENSVTFQWAPFPVEMTGASA-VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 93 (715)
..|+.+|+.++.....+++.. ..... .+|||||++|+ +...+++...++.++ .+++..+.+......
T Consensus 62 ~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~---- 130 (331)
T 3u4y_A 62 QTLVQIETQLEPPKVVAIQEG------QSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDA---- 130 (331)
T ss_dssp CEEEEEECSSSSCEEEEEEEC------SSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTE----
T ss_pred CeEEEEECCCCceeEEecccC------CCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCc----
Confidence 467777665543212222211 23445 89999999998 544332223566665 556655554443333
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCce-EEEEEccCC
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS-LFVININSG 172 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~g 172 (715)
..+.|||||++|++..... .. |++|+++..
T Consensus 131 ------~~~~~spdg~~l~~~~~~~-------------------------------------------~~~i~~~~~~~~ 161 (331)
T 3u4y_A 131 ------VGIAISPNGNGLILIDRSS-------------------------------------------ANTVRRFKIDAD 161 (331)
T ss_dssp ------EEEEECTTSSCEEEEEETT-------------------------------------------TTEEEEEEECTT
T ss_pred ------cceEECCCCCEEEEEecCC-------------------------------------------CceEEEEEECCC
Confidence 6899999999987754321 33 666666432
Q ss_pred -ce----EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccC
Q 005093 173 -EV----QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 247 (715)
Q Consensus 173 -~~----~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 247 (715)
.. ... .........+.|+|||+. ++++.. ....|+++|+
T Consensus 162 g~~~~~~~~~--~~~~~~~~~~~~spdg~~----l~v~~~--------------~~~~v~v~d~---------------- 205 (331)
T 3u4y_A 162 GVLFDTGQEF--ISGGTRPFNITFTPDGNF----AFVANL--------------IGNSIGILET---------------- 205 (331)
T ss_dssp CCEEEEEEEE--ECSSSSEEEEEECTTSSE----EEEEET--------------TTTEEEEEEC----------------
T ss_pred CcEeecCCcc--ccCCCCccceEECCCCCE----EEEEeC--------------CCCeEEEEEC----------------
Confidence 22 111 122334678899999997 766542 2247888997
Q ss_pred CCCCCc---eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCC
Q 005093 248 SEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG 324 (715)
Q Consensus 248 ~~~~~~---~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 324 (715)
.+++. ............++|||||++|++..... ..|+++|+.+++.+.+..-... + . .+
T Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----------~~i~~~d~~~~~~~~~~~~~~~---~-~--~~ 268 (331)
T 3u4y_A 206 -QNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTEST----------VDVFNFNQLSGTLSFVKSFGHG---L-L--ID 268 (331)
T ss_dssp -SSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSE----------EEEEEEETTTTEEEEEEEEECC---C-C--CC
T ss_pred -CCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCC----------CEEEEEECCCCceeeecccccc---c-c--cC
Confidence 55554 22222335567899999999887665432 3488999887654222110000 0 0 00
Q ss_pred CCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 005093 325 DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 325 ~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
. ........++|+|||+.|+++....+ .+..+|+.+.....+..
T Consensus 269 ~----~~~~~~~~~~~spdg~~l~v~~~~~~--~v~v~d~~~~~~~~~~~ 312 (331)
T 3u4y_A 269 P----RPLFGANQMALNKTETKLFISANISR--ELKVFTISGKVVGYVAG 312 (331)
T ss_dssp C----GGGTTCCCEEECTTSSEEEEEETTTT--EEEEEETTSCEEEECTT
T ss_pred C----CCcccccceEECCCCCEEEEecCCCC--cEEEEEecCCcccceec
Confidence 0 01112245689999998877765443 57777887776666543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-12 Score=130.72 Aligned_cols=251 Identities=12% Similarity=0.132 Sum_probs=140.1
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccc-
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSV- 93 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 93 (715)
...|++++++++.. .+++. +..........+|||||++|++....+ +.-.+|.+..+|....+........+..
T Consensus 62 ~~~v~~~~~~~g~~--~~~~~--~~~~~~~p~~~a~spdg~~l~~~~~~~-~~v~v~~~~~~g~~~~~~~~~~~~~~p~~ 136 (347)
T 3hfq_A 62 EGGIAAWQIDGQTA--HKLNT--VVAPGTPPAYVAVDEARQLVYSANYHK-GTAEVMKIAADGALTLTDTVQHSGHGPRP 136 (347)
T ss_dssp EEEEEEEEEETTEE--EEEEE--EEEESCCCSEEEEETTTTEEEEEETTT-TEEEEEEECTTSCEEEEEEEECCCCCSST
T ss_pred CceEEEEEecCCcE--EEeee--eecCCCCCEEEEECCCCCEEEEEeCCC-CEEEEEEeCCCCCeeecceeecCCCCCCc
Confidence 45777877754432 23322 111224567889999999998776433 4344555544555544443321100000
Q ss_pred -cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc-C
Q 005093 94 -YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-S 171 (715)
Q Consensus 94 -~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~ 171 (715)
........+.|||||+ |+. +.. ....|++|+++ +
T Consensus 137 ~~~~~~~~~~~~spdg~-l~v-~~~------------------------------------------~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 137 EQDGSHIHYTDLTPDNR-LAV-IDL------------------------------------------GSDKVYVYNVSDA 172 (347)
T ss_dssp TCSSCCEEEEEECTTSC-EEE-EET------------------------------------------TTTEEEEEEECTT
T ss_pred cccCCCceEEEECCCCc-EEE-EeC------------------------------------------CCCEEEEEEECCC
Confidence 0001235689999999 544 322 12568999988 6
Q ss_pred CceEeec--CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCC
Q 005093 172 GEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 249 (715)
Q Consensus 172 g~~~~l~--~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (715)
|+...+. ..........++|+|||+. ++++.. ....|.+++++ ..
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~----l~v~~~--------------~~~~v~v~~~~---------------~~ 219 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQY----AFLAGE--------------LSSQIASLKYD---------------TQ 219 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSE----EEEEET--------------TTTEEEEEEEE---------------TT
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCE----EEEEeC--------------CCCEEEEEEec---------------CC
Confidence 6655431 0122224557899999997 666542 11245555541 02
Q ss_pred CCCceec---CCCC------ccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 250 DLPVVNL---TESI------SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 250 ~~~~~~l---t~~~------~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
+++.+.+ .... .....++|||||++|+.....+ ..|.++++...+... .+....
T Consensus 220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~----------~~v~v~~~~~~g~~~-------~~~~~~ 282 (347)
T 3hfq_A 220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY----------NTLAVFAVTADGHLT-------LIQQIS 282 (347)
T ss_dssp TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT----------TEEEEEEECGGGCEE-------EEEEEE
T ss_pred CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC----------CEEEEEEECCCCcEE-------EeEEEe
Confidence 3433221 1111 2366799999999887665432 347777775322110 011010
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
.. . ..+..++|+|||+.|++.....+...+|.+|.++|+.+.+.
T Consensus 283 ~~--~-------~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 283 TE--G-------DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp CS--S-------SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred cC--C-------CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence 00 0 12456789999998877766667788999999999988765
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-11 Score=121.90 Aligned_cols=253 Identities=11% Similarity=0.058 Sum_probs=155.2
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCcccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGS 92 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 92 (715)
...+.++++....... .+...........+...+|||||+.|+.....+ .+ .+| .+++......... ...
T Consensus 71 dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i-~~~d~~~~~~~~~~~~~~-~~~- 142 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKS-PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS----TL-SIWDLAAPTPRIKAELTS-SAP- 142 (337)
T ss_dssp BSEEEEEETTSTTCCS-CSEEEECSCTTSBEEEEEECTTSSEEEEEESSS----EE-EEEECCCC--EEEEEEEC-SSS-
T ss_pred CCeEEEEECCCCCcee-eeecccccCCCCcEEEEEEcCCCCEEEEEcCCC----cE-EEEECCCCCcceeeeccc-CCC-
Confidence 3456666676554211 111111112235688999999999998875543 33 344 3333222222211 111
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 172 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 172 (715)
.+..+.|+|||+.|+.... ...|++||+.++
T Consensus 143 -----~i~~~~~~~~~~~l~~~~~--------------------------------------------dg~v~~~d~~~~ 173 (337)
T 1gxr_A 143 -----ACYALAISPDSKVCFSCCS--------------------------------------------DGNIAVWDLHNQ 173 (337)
T ss_dssp -----CEEEEEECTTSSEEEEEET--------------------------------------------TSCEEEEETTTT
T ss_pred -----ceEEEEECCCCCEEEEEeC--------------------------------------------CCcEEEEeCCCC
Confidence 2268999999998887532 256999999888
Q ss_pred ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 173 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
+..... ......+..+.|+|||+. |+... .+..|+.+|+ .+++
T Consensus 174 ~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~---------------~dg~i~~~d~-----------------~~~~ 216 (337)
T 1gxr_A 174 TLVRQF-QGHTDGASCIDISNDGTK----LWTGG---------------LDNTVRSWDL-----------------REGR 216 (337)
T ss_dssp EEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSEEEEEET-----------------TTTE
T ss_pred ceeeee-ecccCceEEEEECCCCCE----EEEEe---------------cCCcEEEEEC-----------------CCCc
Confidence 765431 233446778999999987 66554 2346888897 5555
Q ss_pred ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccccc
Q 005093 253 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 332 (715)
Q Consensus 253 ~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~ 332 (715)
..........+....|+|||+.|+..+.+. .|+++|+.+++...+.. +.
T Consensus 217 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-----------~i~~~~~~~~~~~~~~~--------------------~~ 265 (337)
T 1gxr_A 217 QLQQHDFTSQIFSLGYCPTGEWLAVGMESS-----------NVEVLHVNKPDKYQLHL--------------------HE 265 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEETTS-----------CEEEEETTSSCEEEECC--------------------CS
T ss_pred eEeeecCCCceEEEEECCCCCEEEEEcCCC-----------cEEEEECCCCCeEEEcC--------------------Cc
Confidence 444444556678899999999998776542 48888887755322211 11
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEE
Q 005093 333 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 333 ~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
..+..+.|+||++.++ +...++ .|..+|+.+++..........+....|+++++.|+...
T Consensus 266 ~~v~~~~~~~~~~~l~-~~~~dg--~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 266 SCVLSLKFAYCGKWFV-STGKDN--LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp SCEEEEEECTTSSEEE-EEETTS--EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE
T ss_pred cceeEEEECCCCCEEE-EecCCC--cEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEec
Confidence 1345678999998654 444343 66777888888775554444445567888887665544
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-12 Score=129.66 Aligned_cols=215 Identities=12% Similarity=0.051 Sum_probs=123.8
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHH-HHHHHHcCC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGL 556 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~-i~~l~~~~~ 556 (715)
.+..|.||++||.........|..++..| ..||.|+++|+|| +|.+.. ....++++.+. ++.+.+.
T Consensus 78 ~~~~~~lv~lhG~~~~~~~~~~~~~~~~L-~~~~~v~~~d~~G---~G~~~~-------~~~~~~~~~~~~~~~l~~~-- 144 (319)
T 3lcr_A 78 GQLGPQLILVCPTVMTTGPQVYSRLAEEL-DAGRRVSALVPPG---FHGGQA-------LPATLTVLVRSLADVVQAE-- 144 (319)
T ss_dssp CCSSCEEEEECCSSTTCSGGGGHHHHHHH-CTTSEEEEEECTT---SSTTCC-------EESSHHHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEECCCCcCCCHHHHHHHHHHh-CCCceEEEeeCCC---CCCCCC-------CCCCHHHHHHHHHHHHHHh--
Confidence 34568899999942222356788888888 7899999999999 553211 11123333333 2333332
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhC---CCceeEEEecCCcchhhhhccCCCCCCce--eeeccCCCCCCCCCCCC----
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGSKGKDSFTESP---- 627 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---- 627 (715)
.+..++.|+||||||.+++.+|.++ |++++++|++++....... .....+. ........ ...+....
T Consensus 145 ~~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 220 (319)
T 3lcr_A 145 VADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDG---GRPEELFRSALNERFVE-YLRLTGGGNLSQ 220 (319)
T ss_dssp HTTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSC---CHHHHHHHHHHHHHHHH-HHHHHCCCCHHH
T ss_pred cCCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccc---hhhHHHHHHHHHHHHhh-hhcccCCCchhH
Confidence 1236899999999999999999887 8889999988765321100 0000000 00000000 00000000
Q ss_pred ChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHH
Q 005093 628 SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 707 (715)
Q Consensus 628 ~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 707 (715)
.......+...........+++|+|+++|++ ..+++.....+.+.+.. ..+++.+++.+|.+..++....+.+.|.
T Consensus 221 ~l~~~~~~~~~~~~~~~~~i~~PvLli~g~~-~~~~~~~~~~~~~~~~~---~~~~~~~~g~H~~~~~~~~~~~va~~i~ 296 (319)
T 3lcr_A 221 RITAQVWCLELLRGWRPEGLTAPTLYVRPAQ-PLVEQEKPEWRGDVLAA---MGQVVEAPGDHFTIIEGEHVASTAHIVG 296 (319)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSCEEEEEESS-CSSSCCCTHHHHHHHHT---CSEEEEESSCTTGGGSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcCCCEEEEEeCC-CCCCcccchhhhhcCCC---CceEEEeCCCcHHhhCcccHHHHHHHHH
Confidence 0000111111111112257889999999998 55665666666665542 4678888875555554467778999999
Q ss_pred HHHHHh
Q 005093 708 LWFKKY 713 (715)
Q Consensus 708 ~wl~~~ 713 (715)
+||++.
T Consensus 297 ~fL~~~ 302 (319)
T 3lcr_A 297 DWLREA 302 (319)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999864
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-13 Score=133.98 Aligned_cols=233 Identities=11% Similarity=0.077 Sum_probs=134.4
Q ss_pred CCceEEEEEEecCCCC-----CCCCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCC--CCCCCch---h
Q 005093 461 AQKPFEAIFVSSSHKK-----DCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYR--GSLGFGE---E 527 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~-----~~~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~r--G~~~~g~---~ 527 (715)
-+.++...||+|+++. ..+++|+|.++||.+.. ...|.. ..+.+++.+.++++++-. +..--+. .
T Consensus 24 l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~--~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~~~~~~~~~~~ 101 (299)
T 4fol_A 24 TKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT--PDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGS 101 (299)
T ss_dssp TSSEEEEEEEECGGGGCC------CBCEEEEECCTTCC--HHHHHHHSCHHHHHHHHTCEEEEECSSCCSTTSCCCTTCC
T ss_pred cCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCC--hHHHHHhchHhHHHHHcCchhhccCCCcceeecCCCcccc
Confidence 5678888999998763 35689999999996554 333433 334567789999999842 1100000 0
Q ss_pred h----hhcCCCCCC------ccchhh-HH-HHHHHHHHcCC-------CCCceEEEEEeChhHHHHHHHHhhC--CCcee
Q 005093 528 A----LQSLPGKVG------SQDVND-VL-TAIDHVIDMGL-------ANPSKVTVVGGSHGGFLTTHLIGQA--PDKFV 586 (715)
Q Consensus 528 ~----~~~~~~~~~------~~~~~d-~~-~~i~~l~~~~~-------~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~ 586 (715)
+ ......+.. ....++ +. +.+.++.++.. .+.++.+|.|+||||+.|+.++.++ |.++.
T Consensus 102 ~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~al~~~~~~~~~ 181 (299)
T 4fol_A 102 WDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGYLKGYSGKRYK 181 (299)
T ss_dssp SSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHHHHTGGGTCCS
T ss_pred cccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHHHHHHhCCCCCceE
Confidence 0 000000000 011111 11 23333333321 2456899999999999999999985 67889
Q ss_pred EEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhcc---CC-CCcEEEEeeCCCCcC
Q 005093 587 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS---KV-KTPTIFLLGAQDLRV 662 (715)
Q Consensus 587 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~---~i-~~P~Lii~G~~D~~v 662 (715)
++.+.+|.++..... |.. ..+ ..+.+ .....+...++...+. +. ..+++|-+|+.|...
T Consensus 182 ~~~s~s~~~~p~~~~-------~~~-~~~-----~~~~g----~~~~~~~~~d~~~l~~~~~~~~~~~i~id~G~~D~f~ 244 (299)
T 4fol_A 182 SCSAFAPIVNPSNVP-------WGQ-KAF-----KGYLG----EEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFL 244 (299)
T ss_dssp EEEEESCCCCGGGSH-------HHH-HHH-----HHHTC---------CGGGCHHHHGGGSCCCTTCCEEEEEETTCTTH
T ss_pred EEEecccccCccccc-------ccc-ccc-----ccccc----cchhhhhhcCHHHHHHhcccCCCCceEEEecCCCcch
Confidence 999999887643211 100 000 00000 1112223334433322 22 257999999999876
Q ss_pred Cch-HHHHHHHHHHHcCCc--EEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 663 PVS-NGLQYARALREKGVE--TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 663 ~~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
... ....+.++++++|.+ +++...+|.+|.+... ..++++.++|..++|+
T Consensus 245 ~~~l~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~f~---~~fi~dhl~fha~~Lg 297 (299)
T 4fol_A 245 EEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYFV---STFVPEHAEFHARNLG 297 (299)
T ss_dssp HHHTCTHHHHHHHTTSTTTTCEEEEEETTCCSSHHHH---HHHHHHHHHHHHHHTT
T ss_pred hhhcCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH---HHHHHHHHHHHHHhcC
Confidence 321 125688888888876 7888899989986432 2456778889888875
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-11 Score=131.41 Aligned_cols=248 Identities=6% Similarity=-0.042 Sum_probs=157.0
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
+.+...+|+|+|+.++-....+ .+...+ .+++.......... ....+.|+|||++|++....
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~----~v~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~---- 232 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQAN----AVHVFDLKTLAYKATVDLTGK---------WSKILLYDPIRDLVYCSNWI---- 232 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGT----EEEEEETTTCCEEEEEECSSS---------SEEEEEEETTTTEEEEEETT----
T ss_pred CceeEEEEcCCCEEEEEECCCC----EEEEEECCCceEEEEEcCCCC---------CeeEEEEcCCCCEEEEEecC----
Confidence 4577889999998665443322 344333 44444443332111 12689999999988775322
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccE
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~ 201 (715)
...|++||+++++.... ......+..+.|+|||+.
T Consensus 233 ---------------------------------------~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~---- 267 (433)
T 3bws_A 233 ---------------------------------------SEDISVIDRKTKLEIRK--TDKIGLPRGLLLSKDGKE---- 267 (433)
T ss_dssp ---------------------------------------TTEEEEEETTTTEEEEE--CCCCSEEEEEEECTTSSE----
T ss_pred ---------------------------------------CCcEEEEECCCCcEEEE--ecCCCCceEEEEcCCCCE----
Confidence 25799999998887655 344445778999999997
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
|+......+.. ...+..|+++|+ .+++.............+.|+|||+.|+++...
T Consensus 268 l~~~~~~~~~~-------~~~dg~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 268 LYIAQFSASNQ-------ESGGGRLGIYSM-----------------DKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp EEEEEEESCTT-------CSCCEEEEEEET-----------------TTTEEEEEEEEEECEEEEEECSSTTEEEEEETT
T ss_pred EEEEECCCCcc-------ccCCCeEEEEEC-----------------CCCcEEeeccCCCCcceEEECCCCCEEEEEecC
Confidence 77765322110 012347999997 555554444334456789999999988877654
Q ss_pred CCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCe-----
Q 005093 282 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS----- 356 (715)
Q Consensus 282 ~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~----- 356 (715)
+ ..|+++|+.+++.... +.. ...+..++|+|||+.+++.....+.
T Consensus 324 ~----------~~v~v~d~~~~~~~~~----------~~~----------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 373 (433)
T 3bws_A 324 C----------SKIEVYDLKEKKVQKS----------IPV----------FDKPNTIALSPDGKYLYVSCRGPNHPTEGY 373 (433)
T ss_dssp T----------TEEEEEETTTTEEEEE----------EEC----------SSSEEEEEECTTSSEEEEEECCCCCTTTCT
T ss_pred C----------CEEEEEECCCCcEEEE----------ecC----------CCCCCeEEEcCCCCEEEEEecCCCcccccc
Confidence 3 3588999876543111 000 0123467899999978776654332
Q ss_pred -------eEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 005093 357 -------QVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 409 (715)
Q Consensus 357 -------~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~ 409 (715)
..|+.+|+.+++...............++++++.|++..... ..|.+.++
T Consensus 374 ~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d---~~i~v~~~ 430 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLD---HQIRVYRR 430 (433)
T ss_dssp TSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTT---TEEEEEEE
T ss_pred ccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCC---CeEEEEEe
Confidence 389999999998777665544445567888888876654322 24555554
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.5e-13 Score=129.59 Aligned_cols=210 Identities=15% Similarity=0.087 Sum_probs=124.5
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCCcE---EEEEcCCC--------CCC--Cchhhhh-cCCCC-CC-ccchhhHH
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRG--------SLG--FGEEALQ-SLPGK-VG-SQDVNDVL 545 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~---vi~~d~rG--------~~~--~g~~~~~-~~~~~-~~-~~~~~d~~ 545 (715)
+.||++||.+.. ...|..++..|+++++. ++.++.++ ... .+..... ..... .. ....+++.
T Consensus 4 ~pvvllHG~~~~--~~~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~ 81 (254)
T 3ds8_A 4 IPIILIHGSGGN--ASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDWSKWLK 81 (254)
T ss_dssp CCEEEECCTTCC--TTTTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESSTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCC--cchHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecCCCCCHHHHHHHHH
Confidence 458899996554 45688889999888763 33332221 110 0000000 00001 11 11245566
Q ss_pred HHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC-----ceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCC
Q 005093 546 TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 620 (715)
Q Consensus 546 ~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (715)
++++.+.+.. ..+++.++||||||.+++.++.++|+ +++++|++++..+......... .+..
T Consensus 82 ~~i~~l~~~~--~~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~--------~~~~--- 148 (254)
T 3ds8_A 82 IAMEDLKSRY--GFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGM--------DLSF--- 148 (254)
T ss_dssp HHHHHHHHHH--CCSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHCS--------CTTC---
T ss_pred HHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCccccccccc--------cccc---
Confidence 6667777763 33789999999999999999999988 8999999998765432211000 0000
Q ss_pred CCCCCCCC-hhhHHHHHhcCchhhccCCCCcEEEEeeC------CCCcCCchHHHHHHHHHHHcCCcEEEEEeCC--CCc
Q 005093 621 DSFTESPS-VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN--DVH 691 (715)
Q Consensus 621 ~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P~Lii~G~------~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H 691 (715)
...+. ......+... ...+.+ ++|+|.|+|. .|.+||+..+..+...+.......+.+.+.+ ++|
T Consensus 149 ---~~~p~~~~~~~~~~~~--~~~~~~-~~~vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~~~~~~~~~~~g~~a~H 222 (254)
T 3ds8_A 149 ---KKLPNSTPQMDYFIKN--QTEVSP-DLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIEDIQVGEDAVH 222 (254)
T ss_dssp ---SSCSSCCHHHHHHHHT--GGGSCT-TCEEEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTTBSEEEEEEEESGGGCG
T ss_pred ---ccCCcchHHHHHHHHH--HhhCCC-CcEEEEEEecCCCCCCCCcEeeHHHHHHHHHHhhccCcceEEEEEeCCCCch
Confidence 00111 1111111111 112222 6899999999 9999999988877666654434455566666 668
Q ss_pred cCCCCCchHHHHHHHHHHHHHhc
Q 005093 692 GIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
...... . ++.+.+..|++++.
T Consensus 223 s~l~~~-~-~v~~~i~~fL~~~~ 243 (254)
T 3ds8_A 223 QTLHET-P-KSIEKTYWFLEKFK 243 (254)
T ss_dssp GGGGGS-H-HHHHHHHHHHHTCC
T ss_pred hcccCC-H-HHHHHHHHHHHHhc
Confidence 765443 3 58889999998764
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-12 Score=123.00 Aligned_cols=199 Identities=11% Similarity=0.097 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCC---cEEEEEcCCCCCC--Cchhhh----hc-----CCCC-CC----ccchh
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVG---YSLLIVNYRGSLG--FGEEAL----QS-----LPGK-VG----SQDVN 542 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G---~~vi~~d~rG~~~--~g~~~~----~~-----~~~~-~~----~~~~~ 542 (715)
+.||++||.+.+ ...|..++..|+++| +.|+.+|+++.+. +...+. +. +..+ .+ ....+
T Consensus 5 ~pvv~iHG~~~~--~~~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a~ 82 (250)
T 3lp5_A 5 APVIMVPGSSAS--QNRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAV 82 (250)
T ss_dssp CCEEEECCCGGG--HHHHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHHH
T ss_pred CCEEEECCCCCC--HHHHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHHH
Confidence 458889995443 567888999998877 6777776655221 000000 00 0000 00 11246
Q ss_pred hHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-----CCceeEEEecCCcchhhhhccCCCCCCceeeeccCC
Q 005093 543 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 617 (715)
Q Consensus 543 d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (715)
++.++++.+.++. ..+++.++||||||.++..++.++ +++++.+|++++..+..... .
T Consensus 83 ~l~~~~~~l~~~~--~~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~---------------~ 145 (250)
T 3lp5_A 83 WLNTAFKALVKTY--HFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTS---------------T 145 (250)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCC---------------S
T ss_pred HHHHHHHHHHHHc--CCCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCccccc---------------c
Confidence 7777888887764 457899999999999999988876 67899999888765432110 0
Q ss_pred CCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeC----CCCcCCchHHHHHHHHHHHcCCcEEEEEeC--CCCc
Q 005093 618 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA----QDLRVPVSNGLQYARALREKGVETKVIVFP--NDVH 691 (715)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~----~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~--~~~H 691 (715)
. ........+... ...+.+ .+|+|+|+|+ .|..||...+..+...+.......+.+.+. +++|
T Consensus 146 -----~---~~~~~~~~l~~~--~~~lp~-~vpvl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~~~~~~~~~v~g~~a~H 214 (250)
T 3lp5_A 146 -----T---AKTSMFKELYRY--RTGLPE-SLTVYSIAGTENYTSDGTVPYNSVNYGKYIFQDQVKHFTEITVTGANTAH 214 (250)
T ss_dssp -----S---CCCHHHHHHHHT--GGGSCT-TCEEEEEECCCCCCTTTBCCHHHHTTHHHHHTTTSSEEEEEECTTTTBSS
T ss_pred -----c---ccCHHHHHHHhc--cccCCC-CceEEEEEecCCCCCCceeeHHHHHHHHHHhcccccceEEEEEeCCCCch
Confidence 0 001112222221 122222 6899999999 899999988877766665433444444554 4669
Q ss_pred cCCCCCchHHHHHHHHHHHHH
Q 005093 692 GIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~~ 712 (715)
..... +. ++.+.|.+||.+
T Consensus 215 ~~l~e-~~-~v~~~I~~FL~~ 233 (250)
T 3lp5_A 215 SDLPQ-NK-QIVSLIRQYLLA 233 (250)
T ss_dssp CCHHH-HH-HHHHHHHHHTSC
T ss_pred hcchh-CH-HHHHHHHHHHhc
Confidence 76533 33 688888888754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.7e-11 Score=125.75 Aligned_cols=221 Identities=14% Similarity=0.105 Sum_probs=146.0
Q ss_pred eEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCc
Q 005093 69 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 147 (715)
Q Consensus 69 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (715)
.+...+ .+++....+...... ..+.|||||++|++....
T Consensus 13 ~v~v~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~~~~~~------------------------------ 52 (391)
T 1l0q_A 13 NISVIDVTSNKVTATIPVGSNP----------MGAVISPDGTKVYVANAH------------------------------ 52 (391)
T ss_dssp EEEEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEEGG------------------------------
T ss_pred EEEEEECCCCeEEEEeecCCCc----------ceEEECCCCCEEEEECCC------------------------------
Confidence 344333 455555554433333 689999999998776422
Q ss_pred ccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEE
Q 005093 148 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 227 (715)
Q Consensus 148 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~ 227 (715)
...|++||+++++.... ......+..++|+|||+. |++... ....|+
T Consensus 53 -------------d~~i~v~d~~~~~~~~~--~~~~~~v~~~~~spdg~~----l~~~~~--------------~~~~v~ 99 (391)
T 1l0q_A 53 -------------SNDVSIIDTATNNVIAT--VPAGSSPQGVAVSPDGKQ----VYVTNM--------------ASSTLS 99 (391)
T ss_dssp -------------GTEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSE----EEEEET--------------TTTEEE
T ss_pred -------------CCeEEEEECCCCeEEEE--EECCCCccceEECCCCCE----EEEEEC--------------CCCEEE
Confidence 26799999999887655 233336778999999998 777652 224799
Q ss_pred EEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC
Q 005093 228 AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 307 (715)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~ 307 (715)
++|+ .+++.............++|+|||+.|+++...+ ..|+++|+.+++...
T Consensus 100 v~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 100 VIDT-----------------TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD----------KTVSVINTVTKAVIN 152 (391)
T ss_dssp EEET-----------------TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT----------TEEEEEETTTTEEEE
T ss_pred EEEC-----------------CCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCC----------CEEEEEECCCCcEEE
Confidence 9997 6666555444445678899999999997776543 369999987754321
Q ss_pred cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeec
Q 005093 308 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 387 (715)
Q Consensus 308 lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~ 387 (715)
.. ... ..+..+.|+|||+.++++.... ..|+.+|+.+++...............++++
T Consensus 153 ~~----------~~~----------~~~~~~~~~~dg~~l~~~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (391)
T 1l0q_A 153 TV----------SVG----------RSPKGIAVTPDGTKVYVANFDS--MSISVIDTVTNSVIDTVKVEAAPSGIAVNPE 210 (391)
T ss_dssp EE----------ECC----------SSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEECSSEEEEEEECTT
T ss_pred EE----------ecC----------CCcceEEECCCCCEEEEEeCCC--CEEEEEECCCCeEEEEEecCCCccceEECCC
Confidence 11 000 0234567999999887765443 4688889999887766654443344578888
Q ss_pred CCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 388 GDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 388 ~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
++.+++..... ....|++.++.++
T Consensus 211 g~~l~~~~~~~-~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 211 GTKAYVTNVDK-YFNTVSMIDTGTN 234 (391)
T ss_dssp SSEEEEEEECS-SCCEEEEEETTTT
T ss_pred CCEEEEEecCc-CCCcEEEEECCCC
Confidence 88887766422 3356777776543
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=131.41 Aligned_cols=211 Identities=11% Similarity=0.062 Sum_probs=124.5
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHH-HHHHcC
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID-HVIDMG 555 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~-~l~~~~ 555 (715)
..+..|.||++||.+.......|......|. .+|.|+++|++| +|.+.. ....++++.+.+. .+.+.
T Consensus 63 ~~~~~~~lvllhG~~~~~~~~~~~~~~~~l~-~~~~v~~~d~~G---~G~s~~-------~~~~~~~~a~~~~~~l~~~- 130 (300)
T 1kez_A 63 DGPGEVTVICCAGTAAISGPHEFTRLAGALR-GIAPVRAVPQPG---YEEGEP-------LPSSMAAVAAVQADAVIRT- 130 (300)
T ss_dssp CCSCSSEEEECCCSSTTCSTTTTHHHHHHTS-SSCCBCCCCCTT---SSTTCC-------BCSSHHHHHHHHHHHHHHH-
T ss_pred CCCCCCeEEEECCCcccCcHHHHHHHHHhcC-CCceEEEecCCC---CCCCCC-------CCCCHHHHHHHHHHHHHHh-
Confidence 4456789999999765432256777777774 469999999999 554321 1123555555443 44444
Q ss_pred CCCCceEEEEEeChhHHHHHHHHhhCC---CceeEEEecCCcchhhh-hccCCCCCCceeeeccCCCCCCCCCCCCC--h
Q 005093 556 LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNLAL-MVGTTDIPDWCYVESYGSKGKDSFTESPS--V 629 (715)
Q Consensus 556 ~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 629 (715)
.+.+++.|+|||+||.+++.++.++| ++++++|++++...... .... .........+.... ..... .
T Consensus 131 -~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~ 203 (300)
T 1kez_A 131 -QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNA--WLEELTATLFDRET----VRMDDTRL 203 (300)
T ss_dssp -CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHHH--HHHHHHGGGCCCCS----SCCCHHHH
T ss_pred -cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHHH--HHHHHHHHHHhCcC----CccchHHH
Confidence 34578999999999999999999987 48999999988643211 0000 00000000000000 00000 0
Q ss_pred hhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHc-CCcEEEEEeCCCCccCCCCCchHHHHHHHHH
Q 005093 630 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK-GVETKVIVFPNDVHGIERPQSDFESFLNIGL 708 (715)
Q Consensus 630 ~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~-g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 708 (715)
.....+..........++++|+|+++|+ |..+++.. .. +.+. ...++++++++ +|.....+....+.+.|.+
T Consensus 204 ~~~~~~~~~~~~~~~~~i~~P~lii~G~-d~~~~~~~-~~----~~~~~~~~~~~~~i~g-gH~~~~~e~~~~~~~~i~~ 276 (300)
T 1kez_A 204 TALGAYDRLTGQWRPRETGLPTLLVSAG-EPMGPWPD-DS----WKPTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDA 276 (300)
T ss_dssp HHHHHHHHHTTTCCCCCCSCCBEEEEES-SCSSCCCS-SC----CSCCCSSCCEEEEESS-CTTTSSSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCEEEEEeC-CCCCCCcc-cc----hhhhcCCCCeEEEecC-CChhhccccHHHHHHHHHH
Confidence 0111111111111246788999999995 66666544 11 2222 22478999999 9987643556688899999
Q ss_pred HHHHh
Q 005093 709 WFKKY 713 (715)
Q Consensus 709 wl~~~ 713 (715)
||++.
T Consensus 277 fl~~~ 281 (300)
T 1kez_A 277 WLGGG 281 (300)
T ss_dssp HHTCC
T ss_pred HHHhc
Confidence 99764
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=136.25 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=86.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHh------CCcEEEEEcCCCCCCCchhhhhcCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS------VGYSLLIVNYRGSLGFGEEALQSLPG 534 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~------~G~~vi~~d~rG~~~~g~~~~~~~~~ 534 (715)
+|..|+.....+. ....|.||++||.+.+ ...|...+..|++ .||.|+++|++| ||.+... .
T Consensus 93 ~g~~i~~~~~~~~----~~~~~pllllHG~~~s--~~~~~~~~~~L~~~~~~~~~gf~vv~~DlpG---~G~S~~~---~ 160 (408)
T 3g02_A 93 EGLTIHFAALFSE----REDAVPIALLHGWPGS--FVEFYPILQLFREEYTPETLPFHLVVPSLPG---YTFSSGP---P 160 (408)
T ss_dssp TTEEEEEEEECCS----CTTCEEEEEECCSSCC--GGGGHHHHHHHHHHCCTTTCCEEEEEECCTT---STTSCCS---C
T ss_pred CCEEEEEEEecCC----CCCCCeEEEECCCCCc--HHHHHHHHHHHhcccccccCceEEEEECCCC---CCCCCCC---C
Confidence 7888987766543 2345779999997765 5578888888877 699999999999 5554321 1
Q ss_pred CCCccchhhHHHHHHHHHHcCCCCCc-eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCc
Q 005093 535 KVGSQDVNDVLTAIDHVIDMGLANPS-KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594 (715)
Q Consensus 535 ~~~~~~~~d~~~~i~~l~~~~~~d~~-~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 594 (715)
......++++.+.+..+.+.- ..+ +++++|||+||.+++.+|.++|+++...+.+++.
T Consensus 161 ~~~~~~~~~~a~~~~~l~~~l--g~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~ 219 (408)
T 3g02_A 161 LDKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNM 219 (408)
T ss_dssp SSSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHh--CCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCC
Confidence 112234677777776666652 344 8999999999999999999998766666555443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-11 Score=126.15 Aligned_cols=276 Identities=10% Similarity=0.023 Sum_probs=162.6
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCC--ccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
+.+...+|||||+.+++....+ .+ ..+ ... +.......... +..+.|+|||+.|+... +..
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~~~~-dg~ 73 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPD----AL-IGPGIPRHARQINTLNHGEV----------VCAVTISNPTRHVYTGG-KGC 73 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTT----SS-SSTTCCSEEEEEEEECCSSC----------CCEEEECSSSSEEEEEC-BSE
T ss_pred CceeEEEECCCCCEEEeecCCC----cE-eccccCCccccceeccCCCc----------eEEEEEecCCcEEEEcC-CCe
Confidence 4578899999999998765433 11 222 111 11222222222 37999999999998876 321
Q ss_pred CCCCCccCCCCCCCCCCc-----CCCCCCCCCcccCCcCccc-CCccCceEEEEEccCCceEeec-CCCCCCccceEEEe
Q 005093 120 PSKPTFSLGSTKGGSSDK-----DCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWA 192 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~l~-~~~~~~~~~~~~~s 192 (715)
...|............ ........+.|.++ +..+ .......|.+||+++++..... -......+..+.|+
T Consensus 74 --i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 150 (337)
T 1gxr_A 74 --VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 150 (337)
T ss_dssp --EEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred --EEEEECCCCCceeeeecccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC
Confidence 2233322221111111 12222334556666 3333 3334578999999988732221 02233456789999
Q ss_pred cCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCccccceeEcCC
Q 005093 193 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPD 271 (715)
Q Consensus 193 pdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spd 271 (715)
|+++. |+... .+..|.++|+ .+++ ...+......+....|+||
T Consensus 151 ~~~~~----l~~~~---------------~dg~v~~~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~ 194 (337)
T 1gxr_A 151 PDSKV----CFSCC---------------SDGNIAVWDL-----------------HNQTLVRQFQGHTDGASCIDISND 194 (337)
T ss_dssp TTSSE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCEEEEEECTT
T ss_pred CCCCE----EEEEe---------------CCCcEEEEeC-----------------CCCceeeeeecccCceEEEEECCC
Confidence 99987 66554 2236888887 4443 4455556667889999999
Q ss_pred CCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEe
Q 005093 272 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 351 (715)
Q Consensus 272 g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~ 351 (715)
|+.|+..+.+. .|+++|+.+++...... ....+..+.|+|+++.++...
T Consensus 195 ~~~l~~~~~dg-----------~i~~~d~~~~~~~~~~~--------------------~~~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 195 GTKLWTGGLDN-----------TVRSWDLREGRQLQQHD--------------------FTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp SSEEEEEETTS-----------EEEEEETTTTEEEEEEE--------------------CSSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEecCC-----------cEEEEECCCCceEeeec--------------------CCCceEEEEECCCCCEEEEEc
Confidence 99888766542 48888987754321100 001244667999998666544
Q ss_pred eeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 352 IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 352 ~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
. .+ .+..+|+.+++...+......+....|+++++.++.... -..|.+.++.+
T Consensus 244 ~-~~--~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~~~~~ 296 (337)
T 1gxr_A 244 E-SS--NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK----DNLLNAWRTPY 296 (337)
T ss_dssp T-TS--CEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTT
T ss_pred C-CC--cEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecC----CCcEEEEECCC
Confidence 3 33 577778888888777666555555678888887664442 23466666543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-11 Score=128.11 Aligned_cols=252 Identities=13% Similarity=0.043 Sum_probs=156.6
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCc--cccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
+...+||| +..+++....+ + .++..+ .+++..+...... ... +.+..+.|+|||+.++...
T Consensus 125 ~~~~~~s~-~~~~~~~~~~~-~--~i~~~d~~~g~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~s~~------ 188 (433)
T 3bws_A 125 PKSVRFID-NTRLAIPLLED-E--GMDVLDINSGQTVRLSPPEKYKKKL------GFVETISIPEHNELWVSQM------ 188 (433)
T ss_dssp BCCCEESS-SSEEEEEBTTS-S--SEEEEETTTCCEEEECCCHHHHTTC------CEEEEEEEGGGTEEEEEEG------
T ss_pred ceEEEEeC-CCeEEEEeCCC-C--eEEEEECCCCeEeeecCcccccccC------CceeEEEEcCCCEEEEEEC------
Confidence 55789999 55666665432 2 355444 5555554332211 111 1236889999987554431
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccE
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~ 201 (715)
....|++||+++++..... ......+..++|+|||+.
T Consensus 189 --------------------------------------~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---- 225 (433)
T 3bws_A 189 --------------------------------------QANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPIRDL---- 225 (433)
T ss_dssp --------------------------------------GGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETTTTE----
T ss_pred --------------------------------------CCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCCCCE----
Confidence 1267999999987765431 223345678899999997
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
++++.. ....|+++|+ .+++...............|+|||+.|+..+..
T Consensus 226 l~~~~~--------------~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 226 VYCSNW--------------ISEDISVIDR-----------------KTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp EEEEET--------------TTTEEEEEET-----------------TTTEEEEECCCCSEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEec--------------CCCcEEEEEC-----------------CCCcEEEEecCCCCceEEEEcCCCCEEEEEECC
Confidence 666542 2237999997 556555544445567889999999999887754
Q ss_pred CCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 005093 282 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 361 (715)
Q Consensus 282 ~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~ 361 (715)
.... ......|+++|+.+++........ ..+..++|+||++.++++....+ .++.
T Consensus 275 ~~~~---~~~dg~i~~~d~~~~~~~~~~~~~--------------------~~~~~~~~~~~g~~l~~~~~~~~--~v~v 329 (433)
T 3bws_A 275 ASNQ---ESGGGRLGIYSMDKEKLIDTIGPP--------------------GNKRHIVSGNTENKIYVSDMCCS--KIEV 329 (433)
T ss_dssp SCTT---CSCCEEEEEEETTTTEEEEEEEEE--------------------ECEEEEEECSSTTEEEEEETTTT--EEEE
T ss_pred CCcc---ccCCCeEEEEECCCCcEEeeccCC--------------------CCcceEEECCCCCEEEEEecCCC--EEEE
Confidence 3210 012347999998875432211000 02335679999998887765444 6777
Q ss_pred EECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCC-----------CeEEEEeecc
Q 005093 362 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV-----------PQVKYGYFVD 411 (715)
Q Consensus 362 ~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p-----------~~l~~~~~~~ 411 (715)
+|+.+++...............++++++.+++........ ..|++.++.+
T Consensus 330 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 330 YDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp EETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred EECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 8998888766555444445567888888887776554332 3677777543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-11 Score=124.07 Aligned_cols=199 Identities=16% Similarity=0.143 Sum_probs=124.5
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
.+...+|||||++||...... .....+| .+++..........+ ..+.|||||++|+..+.
T Consensus 135 ~~~~v~fSpDg~~la~as~~~---d~~i~iwd~~~~~~~~~~~~~~~V----------~~v~fspdg~~l~s~s~----- 196 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKV---PAIMRIIDPSDLTEKFEIETRGEV----------KDLHFSTDGKVVAYITG----- 196 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCS---SCEEEEEETTTTEEEEEEECSSCC----------CEEEECTTSSEEEEECS-----
T ss_pred CEEEEEEcCCCCEEEEEECCC---CCEEEEeECCCCcEEEEeCCCCce----------EEEEEccCCceEEeccc-----
Confidence 356789999999998765432 2345667 344444333322222 79999999999988632
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEe-ecCCCCCCccceEEEecCCCCCcc
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
..+.+|+..+++... .+.......+..++|+|||+.
T Consensus 197 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~--- 233 (365)
T 4h5i_A 197 ----------------------------------------SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV--- 233 (365)
T ss_dssp ----------------------------------------SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE---
T ss_pred ----------------------------------------eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE---
Confidence 336677776665432 211223345778899999998
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-----ceecCCCCccccceeEcCCCCeE
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----VVNLTESISSAFFPRFSPDGKFL 275 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~lt~~~~~~~~~~~spdg~~l 275 (715)
++..+.... ....++.+++ .... ...+......+...+|||||+.|
T Consensus 234 -l~~~s~d~~-----------~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 234 -LIAASLKKG-----------KGIVLTKISI-----------------KSGNTSVLRSKQVTNRFKGITSMDVDMKGELA 284 (365)
T ss_dssp -EEEEEESSS-----------CCEEEEEEEE-----------------ETTEEEEEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred -EEEEecCCc-----------ceeEEeeccc-----------------ccceecceeeeeecCCCCCeEeEEECCCCCce
Confidence 776653221 1113555554 2222 23445556678889999999999
Q ss_pred EEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeC
Q 005093 276 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 354 (715)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~ 354 (715)
|..+.+. .|.++|+.+++... +.. .+...+..++|+|||+ ++++...+
T Consensus 285 asgs~D~-----------~V~iwd~~~~~~~~~~~~-------------------gH~~~V~~v~fSpdg~-~laS~S~D 333 (365)
T 4h5i_A 285 VLASNDN-----------SIALVKLKDLSMSKIFKQ-------------------AHSFAITEVTISPDST-YVASVSAA 333 (365)
T ss_dssp EEEETTS-----------CEEEEETTTTEEEEEETT-------------------SSSSCEEEEEECTTSC-EEEEEETT
T ss_pred EEEcCCC-----------EEEEEECCCCcEEEEecC-------------------cccCCEEEEEECCCCC-EEEEEeCC
Confidence 8877653 38888988755321 100 1222456788999998 55677777
Q ss_pred CeeEEEEEE
Q 005093 355 SSQVIISVN 363 (715)
Q Consensus 355 ~~~~l~~~d 363 (715)
+..+||.+.
T Consensus 334 ~tvrvw~ip 342 (365)
T 4h5i_A 334 NTIHIIKLP 342 (365)
T ss_dssp SEEEEEECC
T ss_pred CeEEEEEcC
Confidence 777777654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.9e-11 Score=120.85 Aligned_cols=225 Identities=14% Similarity=0.108 Sum_probs=143.6
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEec-CccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
+...+....|+|++..++-....+ ...+| ..++....... .... ..+.|||||++|+..+.
T Consensus 79 h~~~v~~~~~~~~~~~l~s~s~D~-----~i~lWd~~~~~~~~~~~~~~~~~----------~~~~~spdg~~l~~g~~- 142 (321)
T 3ow8_A 79 HQLGVVSVDISHTLPIAASSSLDA-----HIRLWDLENGKQIKSIDAGPVDA----------WTLAFSPDSQYLATGTH- 142 (321)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCTTCC----------CCEEECTTSSEEEEECT-
T ss_pred CCCCEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCEEEEEeCCCccE----------EEEEECCCCCEEEEEcC-
Confidence 346688999999999887665443 44566 34444333322 1122 68999999999887532
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
...+.+|++++++..... ......+..++|+|||+.
T Consensus 143 -------------------------------------------dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 143 -------------------------------------------VGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp -------------------------------------------TSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSE
T ss_pred -------------------------------------------CCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCE
Confidence 256899999887654331 233345778999999997
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCccccceeEcCCCCeEE
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~ 276 (715)
|+... .+..|.++|+ .+++ ...+......+..++|||||+.|+
T Consensus 179 ----lasg~---------------~dg~i~iwd~-----------------~~~~~~~~~~~h~~~v~~l~~spd~~~l~ 222 (321)
T 3ow8_A 179 ----LASGA---------------IDGIINIFDI-----------------ATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222 (321)
T ss_dssp ----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCCCEEEECTTSCEEE
T ss_pred ----EEEEc---------------CCCeEEEEEC-----------------CCCcEEEEEcccCCceeEEEEcCCCCEEE
Confidence 77654 2236888887 4444 445666666788999999999887
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCC
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 355 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~ 355 (715)
..+.+. .|.++|+.+++... +.. +...+..++|+||++.| ++...++
T Consensus 223 s~s~dg-----------~i~iwd~~~~~~~~~~~~--------------------h~~~v~~~~~sp~~~~l-~s~s~D~ 270 (321)
T 3ow8_A 223 TASDDG-----------YIKIYDVQHANLAGTLSG--------------------HASWVLNVAFCPDDTHF-VSSSSDK 270 (321)
T ss_dssp EECTTS-----------CEEEEETTTCCEEEEECC--------------------CSSCEEEEEECTTSSEE-EEEETTS
T ss_pred EEcCCC-----------eEEEEECCCcceeEEEcC--------------------CCCceEEEEECCCCCEE-EEEeCCC
Confidence 666553 38888887644311 100 11134567899999855 4555454
Q ss_pred eeEEEEEECCCCcEEEec-CCCCCceeEEEeecCCEEEEEE
Q 005093 356 SQVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 356 ~~~l~~~d~~tg~~~~l~-~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
.+..+|+.+++..... .....+....|++++..|+...
T Consensus 271 --~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 271 --SVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp --CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred --cEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 4555688787765543 3333444567788877665433
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=130.06 Aligned_cols=148 Identities=14% Similarity=0.086 Sum_probs=98.3
Q ss_pred CCCCCceEEEEEeChhHHHHHHHHhhCCCcee-EEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHH
Q 005093 555 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV-AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 633 (715)
Q Consensus 555 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (715)
..+|++||+|+|+|+||++++.++..+|++|+ +++++++...... .+... ...+.. .+...+..+...
T Consensus 6 ~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~----~~~~~---~~~~~~----~~~~~~~~~~~~ 74 (318)
T 2d81_A 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCA----RNQYY---TSCMYN----GYPSITTPTANM 74 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTT----SSSCG---GGGSTT----CCCCCHHHHHHH
T ss_pred cCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEeccccccc----chHHH---HHHhhc----cCCCCCCHHHHH
Confidence 45899999999999999999999999999999 8777665321110 00000 000000 000001111112
Q ss_pred HHHhcCchhhccCCC-CcEEEEeeCCCCcCCchHHHHHHHHHHHcCC--cEEEEEeCCCCccCCCCCc------------
Q 005093 634 RFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGV--ETKVIVFPNDVHGIERPQS------------ 698 (715)
Q Consensus 634 ~~~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~--~~~~~~~~~~~H~~~~~~~------------ 698 (715)
.....+++..+.+++ +|+||+||++|.+||++++++++++|++.+. +++++.+++++|.+.....
T Consensus 75 ~~~~~~~i~~~~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~ 154 (318)
T 2d81_A 75 KSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTS 154 (318)
T ss_dssp HHHBTTTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCT
T ss_pred HHhhcccCChhHcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCC
Confidence 222214444444443 6999999999999999999999999998874 7999999999998653321
Q ss_pred ------hHHHHHHHHHHHHHh
Q 005093 699 ------DFESFLNIGLWFKKY 713 (715)
Q Consensus 699 ------~~~~~~~i~~wl~~~ 713 (715)
..+...+|++||...
T Consensus 155 pyi~~~~~d~~~~i~~ff~g~ 175 (318)
T 2d81_A 155 PYISNCNYDGAGAALKWIYGS 175 (318)
T ss_dssp TCEEECSSCHHHHHHHHHHSS
T ss_pred CcccCCCChHHHHHHHHHhcc
Confidence 246778899999543
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.6e-13 Score=143.93 Aligned_cols=221 Identities=14% Similarity=0.079 Sum_probs=130.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHH-HHhCCcEEEEEcCCCCC-CCchhhhhcCCCCC
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAF-LSSVGYSLLIVNYRGSL-GFGEEALQSLPGKV 536 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-~~~~~~~~-la~~G~~vi~~d~rG~~-~~g~~~~~~~~~~~ 536 (715)
.|.+. ..+|.|.+....++.|+||++|||++..... .+...... .+..|++|+.+|||... ||+........ ..
T Consensus 83 edcl~--l~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~~-~~ 159 (522)
T 1ukc_A 83 EDCLF--INVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQN-GD 159 (522)
T ss_dssp SCCCE--EEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHS-SC
T ss_pred CcCCE--EEEEECCCCCCCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhcccc-CC
Confidence 34444 4688897654556789999999998765433 22221111 13579999999999422 23322111111 11
Q ss_pred CccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhC----CCceeEEEecCCcchhhhhccCCCCCCc
Q 005093 537 GSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDW 609 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~----p~~~~~~v~~~~~~~~~~~~~~~~~~~~ 609 (715)
+...+.|+.++++|+.++. ..|+++|.|+|+|+||.++..++... +.+|+++|+.+|....... .....+
T Consensus 160 ~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~---~~~~~~ 236 (522)
T 1ukc_A 160 LNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRT---VSEMEF 236 (522)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCC---SGGGHH
T ss_pred CChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCC---HHHHHH
Confidence 2334889999999998863 36999999999999999887776543 5689999999986532100 000000
Q ss_pred ---eeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhc---------cCCCCc--EEEEeeCCCCcCCchHHHHHHHHHH
Q 005093 610 ---CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHI---------SKVKTP--TIFLLGAQDLRVPVSNGLQYARALR 675 (715)
Q Consensus 610 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~---------~~i~~P--~Lii~G~~D~~v~~~~~~~~~~~l~ 675 (715)
.+....+.. ...+..+.+...++...+ .....| .+..+...|..+.+++..++.+.-+
T Consensus 237 ~~~~~~~~~gc~--------~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g~ 308 (522)
T 1ukc_A 237 QFERFVNDTGCS--------SARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGN 308 (522)
T ss_dssp HHHHHHHHTTCT--------TCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTC
T ss_pred HHHHHHHHcCCC--------CHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCcccCCCHHHHHhcCC
Confidence 011111110 001122223322221110 112233 4556677787777777777766655
Q ss_pred HcCCcEEEEEeCCCCccCC
Q 005093 676 EKGVETKVIVFPNDVHGIE 694 (715)
Q Consensus 676 ~~g~~~~~~~~~~~~H~~~ 694 (715)
..++++.+-...+++|.+.
T Consensus 309 ~~~vp~l~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 309 FIKVPVLVGDDTDEGSNFA 327 (522)
T ss_dssp SCCCCEEEEEETBGGGGTS
T ss_pred CCCCCEEEEeecchhHHhh
Confidence 5567777777888999775
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-10 Score=118.68 Aligned_cols=299 Identities=12% Similarity=0.056 Sum_probs=144.3
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCC
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYAD 96 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (715)
.|+.++++....+...+...+. .........++||||++|+..... .-.+|.+..+|+..++...... +
T Consensus 15 ~i~~~~~d~~~g~l~~~~~~~~-~~~~~~~~~a~spdg~~l~~~~~~---~v~~~~~~~~g~~~~~~~~~~~--g----- 83 (365)
T 1jof_A 15 AIFTVQFDDEKLTCKLIKRTEI-PQDEPISWMTFDHERKNIYGAAMK---KWSSFAVKSPTEIVHEASHPIG--G----- 83 (365)
T ss_dssp EEEEEEEETTTTEEEEEEEEEC-CTTCCCSEEEECTTSSEEEEEEBT---EEEEEEEEETTEEEEEEEEECC--S-----
T ss_pred cEEEEEEECCCCCEEEeeEEcc-CCCCCCcEEEECCCCCEEEEEccc---eEEEEEECCCCCEEEeeEeecC--C-----
Confidence 5777777655443333322110 112356788999999988655432 2223333225655444332210 1
Q ss_pred CcccceeecCCCCeE-EEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc-CCce
Q 005093 97 GWFEGISWNSDETLI-AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEV 174 (715)
Q Consensus 97 ~~~~~~~wSpDg~~l-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~ 174 (715)
....+.|||||++| ++.+...... .+. .+.+. ....+.+|+++ .|+.
T Consensus 84 -~~~~~~~spdg~~l~~~~~~~~~~~-------------------------~~~---~~~~~--~~g~v~v~~~~~~g~~ 132 (365)
T 1jof_A 84 -HPRANDADTNTRAIFLLAAKQPPYA-------------------------VYA---NPFYK--FAGYGNVFSVSETGKL 132 (365)
T ss_dssp -SGGGGCTTSCCEEEEEEECSSTTCC-------------------------EEE---EEESS--SCCEEEEEEECTTCCE
T ss_pred -CCccEEECCCCCEEEEEEecCCcce-------------------------ecc---ceeec--CCceEEEEccCCCCcC
Confidence 11578999999974 4544311000 000 00000 12457777775 3544
Q ss_pred E-eecCC--CCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCC-C
Q 005093 175 Q-AVKGI--PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE-D 250 (715)
Q Consensus 175 ~-~l~~~--~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~ 250 (715)
. .+... ........++|||||+. |+.+. . ....|+++++ + +
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~spdG~~----l~~~~-~-------------~~~~v~~~~~-----------------~~~ 177 (365)
T 1jof_A 133 EKNVQNYEYQENTGIHGMVFDPTETY----LYSAD-L-------------TANKLWTHRK-----------------LAS 177 (365)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSE----EEEEE-T-------------TTTEEEEEEE-----------------CTT
T ss_pred cceEeeEEeCCCCcceEEEECCCCCE----EEEEc-C-------------CCCEEEEEEE-----------------CCC
Confidence 3 22100 12234667899999996 65442 2 1236888887 4 4
Q ss_pred CCceec---C--CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCC
Q 005093 251 LPVVNL---T--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 325 (715)
Q Consensus 251 ~~~~~l---t--~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~ 325 (715)
++.+.+ . .........+|||||++|+...... ..-.+|.++..+++.... . ..+........+
T Consensus 178 g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~--------~~v~v~~~~~~~g~~~~~---~-~~~~~~~~~~~g 245 (365)
T 1jof_A 178 GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG--------NRICEYVIDPATHMPVYT---H-HSFPLIPPGIPD 245 (365)
T ss_dssp SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT--------TEEEEEEECTTTCCEEEE---E-EEEESSCTTCCC
T ss_pred CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC--------CeEEEEEEeCCCCcEEEc---c-ceEEcCCCCcCC
Confidence 554322 1 1123467789999999887765442 122344444333332100 0 000110000000
Q ss_pred Cc---cccccCCCCCCc-cccCCCEEEEEeeeCC-----eeEEEEEECCCCcEEEe---cC-CCCCceeEEEee---cCC
Q 005093 326 CF---PGLYSSSILSNP-WLSDGCTMLLSSIWGS-----SQVIISVNVSSGELLRI---TP-AESNFSWSLLTL---DGD 389 (715)
Q Consensus 326 ~~---~g~~~~~~~~~~-~~~dg~~l~~~~~~~~-----~~~l~~~d~~tg~~~~l---~~-~~~~~~~~~~s~---~~~ 389 (715)
.. .+ ......++ |+|||+.|+.+..... ...+|.++. +|+.+.+ .. .........++| +++
T Consensus 246 ~~~~~~~--~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 246 RDPETGK--GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp BCTTTSS--BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred ccccccc--ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence 00 00 00134577 9999998876554333 344554442 6776642 21 111123357888 788
Q ss_pred EEEEEEeCCCCCCeEEEEeec
Q 005093 390 NIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 390 ~l~~~~~~~~~p~~l~~~~~~ 410 (715)
.|++..... ..|.+++++
T Consensus 323 ~l~v~~~~~---~~v~v~~~~ 340 (365)
T 1jof_A 323 WMAITDDQE---GWLEIYRWK 340 (365)
T ss_dssp EEEEECSSS---CEEEEEEEE
T ss_pred EEEEEEcCC---CeEEEEEEc
Confidence 876554322 345555543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.1e-11 Score=122.06 Aligned_cols=243 Identities=14% Similarity=0.149 Sum_probs=146.1
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
+.+...+|||||++|+.....+ ...+| ..++....... ..+ .+..+.|+|||++|+..+.
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~---h~~------~v~~~~~~~~~~~l~s~~~---- 94 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDS-----SASVWYSLNGERLGTLDG---HTG------TIWSIDVDCFTKYCVTGSA---- 94 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSS-----CEEEEETTTCCEEEEECC---CSS------CEEEEEECTTSSEEEEEET----
T ss_pred ceEEEEEEcCCCCEEEEEeCCC-----EEEEEeCCCchhhhhhhh---cCC------cEEEEEEcCCCCEEEEEeC----
Confidence 6789999999999998775542 23445 34444433321 111 2378999999998887532
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCcc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
...|.+||+.+++.... ......+..+.|+|+|+.
T Consensus 95 ----------------------------------------dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~--- 129 (369)
T 3zwl_B 95 ----------------------------------------DYSIKLWDVSNGQCVAT--WKSPVPVKRVEFSPCGNY--- 129 (369)
T ss_dssp ----------------------------------------TTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSSE---
T ss_pred ----------------------------------------CCeEEEEECCCCcEEEE--eecCCCeEEEEEccCCCE---
Confidence 25699999998887655 234556788999999997
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCc--cccceeEcCCCCeEEEE
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~--~~~~~~~spdg~~l~~~ 278 (715)
++....... .....|.++|+..... ...+. .........+..... .+....|+|||+.|+..
T Consensus 130 -l~~~~~~~~----------~~~g~i~~~d~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 130 -FLAILDNVM----------KNPGSINIYEIERDSA-THELT----KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp -EEEEECCBT----------TBCCEEEEEEEEECTT-TCCEE----EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred -EEEecCCcc----------CCCCEEEEEEecCCcc-ceeec----ccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence 776652210 0113566666510000 00000 000112223333333 67889999999988876
Q ss_pred ecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 358 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 358 (715)
+.+. .|+++|+.++.... ..... +...+..+.|+||++.|+.. ..++ .
T Consensus 194 ~~dg-----------~i~i~d~~~~~~~~---------~~~~~---------~~~~v~~~~~~~~~~~l~~~-~~d~--~ 241 (369)
T 3zwl_B 194 HKDG-----------KISKYDVSNNYEYV---------DSIDL---------HEKSISDMQFSPDLTYFITS-SRDT--N 241 (369)
T ss_dssp ETTS-----------EEEEEETTTTTEEE---------EEEEC---------CSSCEEEEEECTTSSEEEEE-ETTS--E
T ss_pred cCCC-----------EEEEEECCCCcEeE---------EEEec---------CCCceeEEEECCCCCEEEEe-cCCc--e
Confidence 6542 48888987632110 00000 11134567899999866544 3333 6
Q ss_pred EEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEe
Q 005093 359 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 396 (715)
Q Consensus 359 l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~ 396 (715)
|..+|+.+++...............+++++..+++...
T Consensus 242 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (369)
T 3zwl_B 242 SFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGG 279 (369)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEEC
T ss_pred EEEEECCCCceeeeecCCCCceeEEecCCCceEEEeec
Confidence 77789988887766655554555678888887776654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-10 Score=118.07 Aligned_cols=217 Identities=10% Similarity=0.014 Sum_probs=126.8
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 123 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 123 (715)
.+...+|||||++|++....+ +.-.+|.+. .+............ .....+.|||||++|+.....
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~-~~i~~~d~~-~~~~~~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~~------ 149 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNA-GNVSVTRLE-DGLPVGVVDVVEGL-------DGCHSANISPDNRTLWVPALK------ 149 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTT-TEEEEEEEE-TTEEEEEEEEECCC-------TTBCCCEECTTSSEEEEEEGG------
T ss_pred CCcEEEEcCCCCEEEEEecCC-CeEEEEECC-CCccccccccccCC-------CCceEEEECCCCCEEEEecCC------
Confidence 567889999999988775533 322333332 33322222211111 112689999999988765321
Q ss_pred CccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC-CceEeec----CCCCCCccceEEEecCCCCC
Q 005093 124 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-g~~~~l~----~~~~~~~~~~~~~spdg~~~ 198 (715)
...|++||+++ ++...+. ..........+.|+|||+.
T Consensus 150 -------------------------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~- 191 (343)
T 1ri6_A 150 -------------------------------------QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY- 191 (343)
T ss_dssp -------------------------------------GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE-
T ss_pred -------------------------------------CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE-
Confidence 25699999987 7654220 0222334567899999997
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCcee---c---CCC---CccccceeEc
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN---L---TES---ISSAFFPRFS 269 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l---t~~---~~~~~~~~~s 269 (715)
++++.. ....|.+++++ ..+++.+. + ... ......++|+
T Consensus 192 ---l~~~~~--------------~~~~i~~~~~~---------------~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 192 ---AYCVNE--------------LNSSVDVWELK---------------DPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp ---EEEEET--------------TTTEEEEEESS---------------CTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred ---EEEEeC--------------CCCEEEEEEec---------------CCCCcEEEEeeccccCccccccCCccceEEC
Confidence 666542 22357777751 02233221 1 111 1134468999
Q ss_pred CCCCeEEEEecCCCCCCCCccccceeEeeecCC--CCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEE
Q 005093 270 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 347 (715)
Q Consensus 270 pdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~--~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l 347 (715)
|||++|++....+ ..|.++++.. +..+.+ ..+... ..+..++|+|||+.+
T Consensus 240 ~dg~~l~v~~~~~----------~~i~v~d~~~~~~~~~~~--------~~~~~~----------~~~~~~~~s~dg~~l 291 (343)
T 1ri6_A 240 PDGRHLYACDRTA----------SLITVFSVSEDGSVLSKE--------GFQPTE----------TQPRGFNVDHSGKYL 291 (343)
T ss_dssp TTSSEEEEEETTT----------TEEEEEEECTTSCCEEEE--------EEEECS----------SSCCCEEECTTSSEE
T ss_pred CCCCEEEEEecCC----------CEEEEEEEcCCCCceEEe--------eeecCC----------CccceEEECCCCCEE
Confidence 9999886655332 3577888763 221111 000000 124567899999988
Q ss_pred EEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 348 LLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 348 ~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
++.....+...+|.+|.++|+.+.+.
T Consensus 292 ~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 292 IAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp EEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred EEecCCCCeEEEEEEcCCCceeeEcc
Confidence 77766667788999999888776553
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.7e-12 Score=124.11 Aligned_cols=103 Identities=12% Similarity=0.039 Sum_probs=69.7
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
.+..|.||++||++.. ...|..+.. | ..+|.|+++|++| ++.+.. ....++++.+.+..++... .
T Consensus 18 ~~~~~~lv~lhg~~~~--~~~~~~~~~-l-~~~~~v~~~d~~G---~~~~~~-------~~~~~~~~~~~~~~~i~~~-~ 82 (265)
T 3ils_A 18 MVARKTLFMLPDGGGS--AFSYASLPR-L-KSDTAVVGLNCPY---ARDPEN-------MNCTHGAMIESFCNEIRRR-Q 82 (265)
T ss_dssp TTSSEEEEEECCTTCC--GGGGTTSCC-C-SSSEEEEEEECTT---TTCGGG-------CCCCHHHHHHHHHHHHHHH-C
T ss_pred CCCCCEEEEECCCCCC--HHHHHHHHh-c-CCCCEEEEEECCC---CCCCCC-------CCCCHHHHHHHHHHHHHHh-C
Confidence 3456889999997654 445666666 5 6789999999999 332211 1123444444333333221 1
Q ss_pred CCceEEEEEeChhHHHHHHHHh---hCCCceeEEEecCCcc
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIG---QAPDKFVAAAARNPLC 595 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~---~~p~~~~~~v~~~~~~ 595 (715)
...++.++||||||.+++.++. .++++++++|++++..
T Consensus 83 ~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~ 123 (265)
T 3ils_A 83 PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPI 123 (265)
T ss_dssp SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCS
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCC
Confidence 2358999999999999999987 6788899999887643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-10 Score=119.92 Aligned_cols=261 Identities=8% Similarity=0.013 Sum_probs=143.7
Q ss_pred EeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCc--cccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 48 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 48 ~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
++++++++.++..... ..++.++ .+++..+.+.... .. ..+.|||||+++++...
T Consensus 5 ~~~~~~~~~~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~~----------~~~~~s~dg~~~~v~~~-------- 62 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYP----NNLHVVDVASDTVYKSCVMPDKFGP----------GTAMMAPDNRTAYVLNN-------- 62 (349)
T ss_dssp CCCCTTCEEEEEEETT----TEEEEEETTTTEEEEEEECSSCCSS----------CEEEECTTSSEEEEEET--------
T ss_pred ccccCCCEEEEEeCCC----CeEEEEECCCCcEEEEEecCCCCCC----------ceeEECCCCCEEEEEeC--------
Confidence 4677777655443332 3677666 5666665555443 33 68999999998777532
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCC-----CCccceEEEecCCCCCc
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-----~~~~~~~~~spdg~~~~ 199 (715)
....|+++|+++++......... ......+.|||||+.
T Consensus 63 -----------------------------------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-- 105 (349)
T 1jmx_B 63 -----------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE-- 105 (349)
T ss_dssp -----------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSE--
T ss_pred -----------------------------------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCE--
Confidence 12679999999887654310111 122567899999997
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCcee---cCCCCccccceeEcCCCCeEE
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN---LTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---lt~~~~~~~~~~~spdg~~l~ 276 (715)
|++........+..+ ......|+++|+ ++++... ...........+|||||+ |+
T Consensus 106 --l~~~~~~~~~~~~~~---~~~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 106 --VYATVNPTQRLNDHY---VVKPPRLEVFST-----------------ADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp --EEEEEEEEEECSSCE---EECCCEEEEEEG-----------------GGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred --EEEEccccccccccc---ccCCCeEEEEEC-----------------CCccccceeeeccCCCcccceeECCCCc-EE
Confidence 777653200000001 012347999997 4433221 112223456677999999 65
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCCCC-ccccee------------------------eeeeceecC---------
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIV------------------------DVIPVVQCA--------- 322 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~------------------------~~~~~~~~~--------- 322 (715)
..+ . +|+++|+.+++... +..... ....+....
T Consensus 163 ~~~-~------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 229 (349)
T 1jmx_B 163 VAG-P------------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 229 (349)
T ss_dssp EES-S------------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred Ecc-C------------cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence 421 1 27888877655321 111100 000000000
Q ss_pred -----------CCCCccc----cccCCCCCCcccc-CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEee
Q 005093 323 -----------EGDCFPG----LYSSSILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 386 (715)
Q Consensus 323 -----------~~~~~~g----~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~ 386 (715)
......- ........++|+| ||+.+++. ...|+.+|+.+++...............+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~ 304 (349)
T 1jmx_B 230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK 304 (349)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECS
T ss_pred ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECC
Confidence 0000000 0000123456789 99977766 4589999999998765544333234467899
Q ss_pred cCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 387 DGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 387 ~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+++.|++. +. ...|.+.+..++
T Consensus 305 dg~~l~~~--~~--~~~v~v~d~~~~ 326 (349)
T 1jmx_B 305 KGDKLYLG--GT--FNDLAVFNPDTL 326 (349)
T ss_dssp SSSCEEEE--SB--SSEEEEEETTTT
T ss_pred CCCEEEEe--cC--CCeEEEEecccc
Confidence 98888763 22 267888886543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.2e-11 Score=131.41 Aligned_cols=221 Identities=20% Similarity=0.198 Sum_probs=142.8
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEe-cCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
..+...++||||++|+.....+ ...+| ..++...... .... +..+.|||||++|+..+.+
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~dg-----~v~~~~~~~~~~~~~~~~~~~----------v~~~~~s~dg~~l~~~~~d--- 406 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDDK-----TVKLWNRNGQLLQTLTGHSSS----------VRGVAFSPDGQTIASASDD--- 406 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----EEEEEETTCCEEEEEECCSSC----------EEEEEECTTSSCEEEEETT---
T ss_pred CCEEEEEECCCCCEEEEEeCCC-----EEEEEcCCCCEEEEecCCCCC----------eEEEEECCCCCEEEEEeCC---
Confidence 5578899999999998776543 34456 4444333222 1222 3789999999999875322
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCcc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
..|.+||.++.....+ ......+..++|+||++.
T Consensus 407 -----------------------------------------~~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~d~~~--- 440 (577)
T 2ymu_A 407 -----------------------------------------KTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPDDQT--- 440 (577)
T ss_dssp -----------------------------------------SEEEEECTTCCEEEEE--ECCSSCEEEEEECTTSSE---
T ss_pred -----------------------------------------CEEEEEeCCCCEEEEe--cCCCCCeEEEEECCCCCE---
Confidence 5688888766555556 333445778999999997
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEec
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
|+... .+..|.++|+ .+.....+......+...+|||||+.|+..+.
T Consensus 441 -l~~~~---------------~d~~v~~w~~-----------------~~~~~~~~~~~~~~v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 441 -IASAS---------------DDKTVKLWNR-----------------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 487 (577)
T ss_dssp -EEEEE---------------TTSEEEEEET-----------------TSCEEEEEECCSSCEEEEEECTTSCEEEEEET
T ss_pred -EEEEc---------------CCCEEEEEEC-----------------CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 77654 2235777785 55566677777777889999999999987665
Q ss_pred CCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
+. .|.++|..+...+.+.. +...+..++|+|||+.| ++...++. |.
T Consensus 488 d~-----------~i~iw~~~~~~~~~~~~--------------------h~~~v~~l~~s~dg~~l-~s~~~dg~--v~ 533 (577)
T 2ymu_A 488 DK-----------TVKLWNRNGQLLQTLTG--------------------HSSSVRGVAFSPDGQTI-ASASDDKT--VK 533 (577)
T ss_dssp TS-----------EEEEEETTSCEEEEEEC--------------------CSSCEEEEEECTTSSCE-EEEETTSE--EE
T ss_pred CC-----------EEEEEcCCCCEEEEEeC--------------------CCCCEEEEEEcCCCCEE-EEEECcCE--EE
Confidence 42 47778854322111111 11234567899999855 45554554 55
Q ss_pred EEECCCCcEEEecCCCCCceeEEEeecCCEEEEE
Q 005093 361 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 361 ~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~ 394 (715)
.+|..+.....+......+....|++|++.|+..
T Consensus 534 lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~ 567 (577)
T 2ymu_A 534 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 567 (577)
T ss_dssp EECTTSCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred EEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 5576444455555444445556788988876643
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-10 Score=118.25 Aligned_cols=232 Identities=10% Similarity=0.022 Sum_probs=141.1
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEec-CccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
..+...+||||+ +|+..... +.-.+|.+ ..++....... ..+..+. +..++|||||++|+..+.+
T Consensus 83 ~~v~~~~~s~d~-~l~~~s~d--g~v~lWd~-~~~~~~~~~~~~~~~H~~~------V~~v~~spdg~~l~sgs~d---- 148 (344)
T 4gqb_B 83 AGVADLTWVGER-GILVASDS--GAVELWEL-DENETLIVSKFCKYEHDDI------VSTVSVLSSGTQAVSGSKD---- 148 (344)
T ss_dssp SCEEEEEEETTT-EEEEEETT--SEEEEEEE-CTTSSCEEEEEEEECCSSC------EEEEEECTTSSEEEEEETT----
T ss_pred CCEEEEEEeCCC-eEEEEECC--CEEEEEec-cCCCceeEeeccccCCCCC------EEEEEECCCCCEEEEEeCC----
Confidence 357889999997 45544333 33233333 33333322221 1122122 3799999999998875332
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccE
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~ 201 (715)
..|.+||+++++..... ......+..+.|+|+++.
T Consensus 149 ----------------------------------------~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~---- 183 (344)
T 4gqb_B 149 ----------------------------------------ICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDS---- 183 (344)
T ss_dssp ----------------------------------------SCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTT----
T ss_pred ----------------------------------------CeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCC----
Confidence 56999999998765431 233446778999999998
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCC--CCccccceeEcCCCCeEEEE
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE--SISSAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~--~~~~~~~~~~spdg~~l~~~ 278 (715)
++.++.. +..|.++|+ .+++. ..+.. .........|+|++..++.+
T Consensus 184 ~l~s~s~--------------D~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 184 VFLSCSE--------------DNRILLWDT-----------------RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp EEEEEET--------------TSCEEEEET-----------------TSSSCEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred ceeeecc--------------ccccccccc-----------------cccceeeeeecceeeccceeeeecCCCCcceEE
Confidence 7766532 235778887 44443 33332 22346778999977655444
Q ss_pred ecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCee
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 357 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 357 (715)
...+ ..|.++|+.+++... +.. +...+..++|+|||..++++...++.
T Consensus 233 g~~d----------g~v~~wd~~~~~~~~~~~~--------------------h~~~v~~v~fsp~g~~~lasgs~D~~- 281 (344)
T 4gqb_B 233 GDEN----------GTVSLVDTKSTSCVLSSAV--------------------HSQCVTGLVFSPHSVPFLASLSEDCS- 281 (344)
T ss_dssp EETT----------SEEEEEESCC--CCEEEEC--------------------CSSCEEEEEECSSSSCCEEEEETTSC-
T ss_pred eccC----------CcEEEEECCCCcEEEEEcC--------------------CCCCEEEEEEccCCCeEEEEEeCCCe-
Confidence 4332 248888987755321 110 11234567899999777777766654
Q ss_pred EEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEe
Q 005093 358 VIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 396 (715)
Q Consensus 358 ~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~ 396 (715)
|..+|+.+++...+......+....|++++..++++.+
T Consensus 282 -i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s 319 (344)
T 4gqb_B 282 -LAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVG 319 (344)
T ss_dssp -EEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred -EEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEc
Confidence 44558889988777655554555678888887766554
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-12 Score=128.79 Aligned_cols=215 Identities=14% Similarity=0.063 Sum_probs=125.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc-ch-HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccch
Q 005093 464 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541 (715)
Q Consensus 464 ~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~-~~-~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~ 541 (715)
.+.+.++.|..+. .+..+.||++||.... ... |. .+...|+++||.|+++|+|| +|.... ....
T Consensus 15 ~l~~~i~~p~~~~-~~~~~~VvllHG~~~~--~~~~~~~~l~~~L~~~G~~v~~~d~~g---~g~~~~--------~~~~ 80 (317)
T 1tca_A 15 VLDAGLTCQGASP-SSVSKPILLVPGTGTT--GPQSFDSNWIPLSTQLGYTPCWISPPP---FMLNDT--------QVNT 80 (317)
T ss_dssp HHHHTEEETTBCT-TSCSSEEEEECCTTCC--HHHHHTTTHHHHHHTTTCEEEEECCTT---TTCSCH--------HHHH
T ss_pred HHhheeeCCCCCC-CCCCCeEEEECCCCCC--cchhhHHHHHHHHHhCCCEEEEECCCC---CCCCcH--------HHHH
Confidence 3445577776553 2345679999996544 233 66 67888999999999999998 432210 1125
Q ss_pred hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCC---CceeEEEecCCcchhhhhccCCCCCCceeeeccCCC
Q 005093 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 618 (715)
Q Consensus 542 ~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (715)
+++.++++.+.+.. ..+++.|+||||||.++..++..++ ++++++|+++|............. +. ....
T Consensus 81 ~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~g~~~~~~~~~--~~----~~~~ 152 (317)
T 1tca_A 81 EYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDA--LA----VSAP 152 (317)
T ss_dssp HHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHH--TT----CBCH
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCCCCcchhhhhh--hh----hcCc
Confidence 67788888887763 3478999999999999998888765 789999999986532211100000 00 0000
Q ss_pred CCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchH--HHHHHHHHHHcCCcEEEEEe-------CCC
Q 005093 619 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN--GLQYARALREKGVETKVIVF-------PND 689 (715)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~--~~~~~~~l~~~g~~~~~~~~-------~~~ 689 (715)
..... .........+.... .....+|+++++|..|.+|++.. +......+. +. +.+.+ ++.
T Consensus 153 ~~~~~--~~~s~f~~~L~~~~----~~~~~vp~~~i~g~~D~iV~p~~~~g~~~~~~l~--~a--~~~~~~~~~~~~~~~ 222 (317)
T 1tca_A 153 SVWQQ--TTGSALTTALRNAG----GLTQIVPTTNLYSATDEIVQPQVSNSPLDSSYLF--NG--KNVQAQAVCGPLFVI 222 (317)
T ss_dssp HHHHT--BTTCHHHHHHHHTT----TTBCSSCEEEEECTTCSSSCCCCSSSTTSTTCCB--TS--EEEEHHHHHCTTCCC
T ss_pred hHHhh--CcCcHHHHHHHhcC----CCCCCCCEEEEEeCCCCeECCccccccchhhhcc--CC--ccEEeeeccCCCCcc
Confidence 00000 00001111111110 01236899999999999998765 111111121 11 22222 577
Q ss_pred CccCCCCCchHHHHHHHHHHHHH
Q 005093 690 VHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 690 ~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+|...... ...+..+++||+.
T Consensus 223 gH~~~l~~--p~~~~~v~~~L~~ 243 (317)
T 1tca_A 223 DHAGSLTS--QFSYVVGRSALRS 243 (317)
T ss_dssp CTTHHHHB--HHHHHHHHHHHHC
T ss_pred CcccccCC--HHHHHHHHHHhcC
Confidence 89644222 2457788898875
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.9e-11 Score=120.85 Aligned_cols=214 Identities=14% Similarity=0.139 Sum_probs=132.3
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHG 91 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 91 (715)
....|.++|+.++.. ...+...+ ..+...+|||||++|+.....+ ...+| ..++..........
T Consensus 100 ~D~~i~lWd~~~~~~-~~~~~~~~-----~~~~~~~~spdg~~l~~g~~dg-----~v~i~~~~~~~~~~~~~~~~~--- 165 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQ-IKSIDAGP-----VDAWTLAFSPDSQYLATGTHVG-----KVNIFGVESGKKEYSLDTRGK--- 165 (321)
T ss_dssp TTSEEEEEETTTTEE-EEEEECCT-----TCCCCEEECTTSSEEEEECTTS-----EEEEEETTTCSEEEEEECSSS---
T ss_pred CCCcEEEEECCCCCE-EEEEeCCC-----ccEEEEEECCCCCEEEEEcCCC-----cEEEEEcCCCceeEEecCCCc---
Confidence 344566666654421 12222222 4567789999999998765442 23444 34443333222111
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
.+..+.|||||++|+..+.+ ..|.+||+.+
T Consensus 166 ------~v~~~~~spdg~~lasg~~d--------------------------------------------g~i~iwd~~~ 195 (321)
T 3ow8_A 166 ------FILSIAYSPDGKYLASGAID--------------------------------------------GIINIFDIAT 195 (321)
T ss_dssp ------CEEEEEECTTSSEEEEEETT--------------------------------------------SCEEEEETTT
T ss_pred ------eEEEEEECCCCCEEEEEcCC--------------------------------------------CeEEEEECCC
Confidence 22689999999999875332 5699999998
Q ss_pred CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC
Q 005093 172 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 251 (715)
Q Consensus 172 g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (715)
++..... ......+..++|+|||+. |+..+ .+..|.++|+ ..+
T Consensus 196 ~~~~~~~-~~h~~~v~~l~~spd~~~----l~s~s---------------~dg~i~iwd~-----------------~~~ 238 (321)
T 3ow8_A 196 GKLLHTL-EGHAMPIRSLTFSPDSQL----LVTAS---------------DDGYIKIYDV-----------------QHA 238 (321)
T ss_dssp TEEEEEE-CCCSSCCCEEEECTTSCE----EEEEC---------------TTSCEEEEET-----------------TTC
T ss_pred CcEEEEE-cccCCceeEEEEcCCCCE----EEEEc---------------CCCeEEEEEC-----------------CCc
Confidence 8765431 233446788999999986 66544 2235778886 433
Q ss_pred -CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccc
Q 005093 252 -PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPG 329 (715)
Q Consensus 252 -~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g 329 (715)
....+......+..++|+|||+.|+..+.+. .|.++|+.++.... +..
T Consensus 239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~-----------~v~iwd~~~~~~~~~~~~------------------- 288 (321)
T 3ow8_A 239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDK-----------SVKVWDVGTRTCVHTFFD------------------- 288 (321)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----------CEEEEETTTTEEEEEECC-------------------
T ss_pred ceeEEEcCCCCceEEEEECCCCCEEEEEeCCC-----------cEEEEeCCCCEEEEEEcC-------------------
Confidence 3445666677788999999999988776553 48888887644311 100
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 330 LYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 330 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
+...+..+.|++||+.| ++...++..+||
T Consensus 289 -h~~~v~~v~~s~~g~~l-~s~~~d~~i~vw 317 (321)
T 3ow8_A 289 -HQDQVWGVKYNGNGSKI-VSVGDDQEIHIY 317 (321)
T ss_dssp -CSSCEEEEEECTTSSEE-EEEETTCCEEEE
T ss_pred -CCCcEEEEEECCCCCEE-EEEeCCCeEEEE
Confidence 11134567899999855 555555555555
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5.1e-12 Score=123.54 Aligned_cols=208 Identities=16% Similarity=0.181 Sum_probs=112.3
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
+..|.||++||.+.. ...|...+..|+ .+|.|+++|+|| +|.+.. ....|+.+.++.+.+.-.+.
T Consensus 11 ~~~~~lv~lhg~g~~--~~~~~~~~~~L~-~~~~vi~~Dl~G---hG~S~~---------~~~~~~~~~~~~~~~~l~~~ 75 (242)
T 2k2q_B 11 SEKTQLICFPFAGGY--SASFRPLHAFLQ-GECEMLAAEPPG---HGTNQT---------SAIEDLEELTDLYKQELNLR 75 (242)
T ss_dssp TCCCEEESSCCCCHH--HHHHHHHHHHHC-CSCCCEEEECCS---SCCSCC---------CTTTHHHHHHHHTTTTCCCC
T ss_pred CCCceEEEECCCCCC--HHHHHHHHHhCC-CCeEEEEEeCCC---CCCCCC---------CCcCCHHHHHHHHHHHHHhh
Confidence 445678999996544 446777788775 479999999999 555421 12456666666665432222
Q ss_pred -CceEEEEEeChhHHHHHHHHhh------CCCceeEEEecCCcchhhhhccCCCCCCceeeecc---CC--CC------C
Q 005093 559 -PSKVTVVGGSHGGFLTTHLIGQ------APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY---GS--KG------K 620 (715)
Q Consensus 559 -~~~i~l~G~S~GG~~a~~~a~~------~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~------~ 620 (715)
.+++.|+||||||.+|+.+|.+ +|+++-......|...... ............+ .. .. .
T Consensus 76 ~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (242)
T 2k2q_B 76 PDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQPPHIQRKK---VSHLPDDQFLDHIIQLGGMPAELVENKEV 152 (242)
T ss_dssp CCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSEEEEEEECSCCCSCC---CSSCTTHHHHHTTCCTTCCCCTTTHHHHT
T ss_pred cCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEEEEECCCCCCCCccc---ccCCCHHHHHHHHHHhCCCChHHhcCHHH
Confidence 3689999999999999999876 5665321111111110000 0000000000000 00 00 0
Q ss_pred CCCCCCCCh-hhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCch
Q 005093 621 DSFTESPSV-EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 699 (715)
Q Consensus 621 ~~~~~~~~~-~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 699 (715)
.... .+.. ........... ..+.++++|+|+++|++|..++ ... +.+.+.-...+++++++ ||....+ ..
T Consensus 153 ~~~~-~~~~~~~~~~~~~~~~-~~l~~i~~P~lvi~G~~D~~~~-~~~----~~~~~~~~~~~~~~~~~-gH~~~~e-~p 223 (242)
T 2k2q_B 153 MSFF-LPSFRSDYRALEQFEL-YDLAQIQSPVHVFNGLDDKKCI-RDA----EGWKKWAKDITFHQFDG-GHMFLLS-QT 223 (242)
T ss_dssp TTTC-CSCHHHHHHHHTCCCC-SCCTTCCCSEEEEEECSSCCHH-HHH----HHHHTTCCCSEEEEEEC-CCSHHHH-HC
T ss_pred HHHH-HHHHHHHHHHHHhccc-CCCCccCCCEEEEeeCCCCcCH-HHH----HHHHHHhcCCeEEEEeC-CceeEcC-CH
Confidence 0000 0000 11111111111 1256789999999999998753 222 22333323345778875 8965533 34
Q ss_pred HHHHHHHHHHHHHh
Q 005093 700 FESFLNIGLWFKKY 713 (715)
Q Consensus 700 ~~~~~~i~~wl~~~ 713 (715)
..+.+.+.+|+++.
T Consensus 224 ~~~~~~i~~fl~~~ 237 (242)
T 2k2q_B 224 EEVAERIFAILNQH 237 (242)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcc
Confidence 57888899998753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-10 Score=121.85 Aligned_cols=259 Identities=13% Similarity=0.056 Sum_probs=148.2
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEec-CCccEEEEe---cCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFH---VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
.+...+|||||++|+++...+ +.-.+|.+.. +++..+.+. ....+ ..+.|+|||++|+....
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~v----------~~~~~sp~~~~l~~~~~--- 169 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSD-KSLLVFDVDKTSKNVLKLRKRFCFSKRP----------NAISIAEDDTTVIIADK--- 169 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGG-TEEEEEEECSSSSSCEEEEEEEECSSCE----------EEEEECTTSSEEEEEET---
T ss_pred ceEEEEEcCCCCEEEEEECCC-CeEEEEECcCCCCceeeeeecccCCCCc----------eEEEEcCCCCEEEEEeC---
Confidence 588999999999986665543 4444555441 455544442 12222 78999999999887532
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEe-----ecCCCCCCccceEEEecC
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-----VKGIPKSLSVGQVVWAPL 194 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-----l~~~~~~~~~~~~~~spd 194 (715)
...+++|++.+++... + ......+..+.|+||
T Consensus 170 -----------------------------------------~g~v~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~ 206 (450)
T 2vdu_B 170 -----------------------------------------FGDVYSIDINSIPEEKFTQEPI--LGHVSMLTDVHLIKD 206 (450)
T ss_dssp -----------------------------------------TSEEEEEETTSCCCSSCCCCCS--EECSSCEEEEEEEEC
T ss_pred -----------------------------------------CCcEEEEecCCcccccccceee--ecccCceEEEEEcCC
Confidence 2568999998776542 2 112335778899999
Q ss_pred ---CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-cee-cCCCCccccceeEc
Q 005093 195 ---NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN-LTESISSAFFPRFS 269 (715)
Q Consensus 195 ---g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-lt~~~~~~~~~~~s 269 (715)
++. |+... .+..|+++|+ .++. ... +......+..+.||
T Consensus 207 ~~~~~~----l~s~~---------------~d~~i~vwd~-----------------~~~~~~~~~~~~h~~~v~~~~~s 250 (450)
T 2vdu_B 207 SDGHQF----IITSD---------------RDEHIKISHY-----------------PQCFIVDKWLFGHKHFVSSICCG 250 (450)
T ss_dssp TTSCEE----EEEEE---------------TTSCEEEEEE-----------------SCTTCEEEECCCCSSCEEEEEEC
T ss_pred CCCCcE----EEEEc---------------CCCcEEEEEC-----------------CCCceeeeeecCCCCceEEEEEC
Confidence 775 55443 2236778886 4444 333 44566778999999
Q ss_pred CCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCC--CCCc----cccccCCCCCCccccC
Q 005093 270 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE--GDCF----PGLYSSSILSNPWLSD 343 (715)
Q Consensus 270 pdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~--~~~~----~g~~~~~~~~~~~~~d 343 (715)
||+.|+..+.+ ..|.++|+.+++..........+..+..... ...| .......+..+.|+||
T Consensus 251 -d~~~l~s~~~d-----------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 251 -KDYLLLSAGGD-----------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp -STTEEEEEESS-----------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred -CCCEEEEEeCC-----------CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 99998877644 2588899887653211100000000000000 0000 0001123456789999
Q ss_pred CCEEEEEeeeCCeeEEEEE-ECCCCcE---EEecCCCCCceeEEEeecCCEEEEEEeCCCCCC------eEEEEeec
Q 005093 344 GCTMLLSSIWGSSQVIISV-NVSSGEL---LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP------QVKYGYFV 410 (715)
Q Consensus 344 g~~l~~~~~~~~~~~l~~~-d~~tg~~---~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~------~l~~~~~~ 410 (715)
++.+++.....+...||.+ +..++.. ..+... ..+....|++ +.++++..+...|. ++|.++..
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~--~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN--DEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET--TEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC--CcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 9977766545555556655 2223222 223333 3333334555 56777777766664 67776644
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.9e-10 Score=115.34 Aligned_cols=244 Identities=10% Similarity=0.032 Sum_probs=153.4
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
+.+...+|||||++|+.....+ ...+| .+++..........+ ..+.|+|||+.|+.......
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~l~~~~~~~~- 138 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADY-----SIKLWDVSNGQCVATWKSPVPV----------KRVEFSPCGNYFLAILDNVM- 138 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTT-----EEEEEETTTCCEEEEEECSSCE----------EEEEECTTSSEEEEEECCBT-
T ss_pred CcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEeecCCCe----------EEEEEccCCCEEEEecCCcc-
Confidence 6789999999999998776543 34455 455555554433333 79999999999988754310
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce------------EeecCCCCCCccce
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV------------QAVKGIPKSLSVGQ 188 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~------------~~l~~~~~~~~~~~ 188 (715)
. ....|.+||+.++.. ..+........+..
T Consensus 139 ---------------------------------~-----~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 139 ---------------------------------K-----NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp ---------------------------------T-----BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred ---------------------------------C-----CCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 0 226688888876532 11111122225778
Q ss_pred EEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC--CCceecCCCCccccce
Q 005093 189 VVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED--LPVVNLTESISSAFFP 266 (715)
Q Consensus 189 ~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lt~~~~~~~~~ 266 (715)
+.|+|||+. |+... .+..|.++|+ .+ .....+......+...
T Consensus 181 ~~~~~~~~~----l~~~~---------------~dg~i~i~d~-----------------~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 181 AGWSTKGKY----IIAGH---------------KDGKISKYDV-----------------SNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp EEECGGGCE----EEEEE---------------TTSEEEEEET-----------------TTTTEEEEEEECCSSCEEEE
T ss_pred EEEcCCCCE----EEEEc---------------CCCEEEEEEC-----------------CCCcEeEEEEecCCCceeEE
Confidence 899999997 66554 2246888887 33 3344555566778899
Q ss_pred eEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCE
Q 005093 267 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 346 (715)
Q Consensus 267 ~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~ 346 (715)
.|+|||+.|+..+.+. .|+++|+.++........ ...+..+.|+|+++.
T Consensus 225 ~~~~~~~~l~~~~~d~-----------~i~v~d~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~ 273 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDT-----------NSFLVDVSTLQVLKKYET--------------------DCPLNTAVITPLKEF 273 (369)
T ss_dssp EECTTSSEEEEEETTS-----------EEEEEETTTCCEEEEEEC--------------------SSCEEEEEECSSSSE
T ss_pred EECCCCCEEEEecCCc-----------eEEEEECCCCceeeeecC--------------------CCCceeEEecCCCce
Confidence 9999999988776542 488899877553211100 012345679999997
Q ss_pred EEEEeeeCC-----------eeEEEEEECCCCcEEEecC-CCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 347 MLLSSIWGS-----------SQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 347 l~~~~~~~~-----------~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
+++....++ ...+..+|..+++...... ....+....|+++++.|+....+ ..|.+.++..
T Consensus 274 l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~ 346 (369)
T 3zwl_B 274 IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED----GFIRLHHFEK 346 (369)
T ss_dssp EEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT----SEEEEEEECH
T ss_pred EEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC----CeEEEEECcc
Confidence 776654331 2267888888877665443 33345556788888766644322 2466666643
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-10 Score=117.19 Aligned_cols=227 Identities=11% Similarity=0.014 Sum_probs=136.8
Q ss_pred eEEEEe-cCCccEEEEecCc---cccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCC
Q 005093 69 IQFELW-SQSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 144 (715)
Q Consensus 69 ~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (715)
.++.++ .+++..+.+.... .. ..+.|||||++|++....
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~--------------------------- 54 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTP----------MVPMVAPGGRIAYATVNK--------------------------- 54 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCC----------CCEEECTTSSEEEEEETT---------------------------
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCc----------cceEEcCCCCEEEEEeCC---------------------------
Confidence 566555 5566555555433 23 689999999988776421
Q ss_pred CCcccCCcCcccCCccCceEEEEEccCCceEe-ecCCCC----CCccceEEEecCCCCCccEEEEEeecCccceeeeeee
Q 005093 145 QGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYC 219 (715)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~----~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~ 219 (715)
...|++||+++++... +. ... ......+.|+|||+. |++.....+..+...
T Consensus 55 ----------------~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~----l~~~~~~~~~~~~~~--- 110 (337)
T 1pby_B 55 ----------------SESLVKIDLVTGETLGRID-LSTPEERVKSLFGAALSPDGKT----LAIYESPVRLELTHF--- 110 (337)
T ss_dssp ----------------TTEEEEEETTTCCEEEEEE-CCBTTEEEECTTCEEECTTSSE----EEEEEEEEEECSSCE---
T ss_pred ----------------CCeEEEEECCCCCeEeeEE-cCCcccccccccceEECCCCCE----EEEEecccccccccc---
Confidence 2679999999888654 32 111 014567899999997 777642110000000
Q ss_pred ecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeee
Q 005093 220 YNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 299 (715)
Q Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~ 299 (715)
......|+++|+ .+++.............+.|||||++|++.+ .+|+++|
T Consensus 111 ~~~~~~i~v~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-------------~~i~~~d 160 (337)
T 1pby_B 111 EVQPTRVALYDA-----------------ETLSRRKAFEAPRQITMLAWARDGSKLYGLG-------------RDLHVMD 160 (337)
T ss_dssp EECCCEEEEEET-----------------TTTEEEEEEECCSSCCCEEECTTSSCEEEES-------------SSEEEEE
T ss_pred cccCceEEEEEC-----------------CCCcEEEEEeCCCCcceeEECCCCCEEEEeC-------------CeEEEEE
Confidence 002357999997 5555443333334567789999999988772 1389999
Q ss_pred cCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCee---------------------E
Q 005093 300 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ---------------------V 358 (715)
Q Consensus 300 ~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~---------------------~ 358 (715)
+.+++.... +.... ......|+|||+.+++.....+.. .
T Consensus 161 ~~~~~~~~~----------~~~~~----------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T 1pby_B 161 PEAGTLVED----------KPIQS----------WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp TTTTEEEEE----------ECSTT----------TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred CCCCcEeee----------eeccc----------cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc
Confidence 877553211 00000 012346888888766544332221 6
Q ss_pred EEEEECCCCcEEEecCCC--CCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 359 IISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 359 l~~~d~~tg~~~~l~~~~--~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
|+.+|+.+++...+.... .......++++++.+++. -..|+++++.++
T Consensus 221 v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~------~~~v~~~d~~~~ 270 (337)
T 1pby_B 221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA------YNVLESFDLEKN 270 (337)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE------ESEEEEEETTTT
T ss_pred eEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe------CCeEEEEECCCC
Confidence 899999999876443221 122335788999888766 156888887544
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-10 Score=120.09 Aligned_cols=226 Identities=12% Similarity=0.085 Sum_probs=137.5
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHG 91 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 91 (715)
....|.++|+.++... ..+. ..+..+.+.+...+|||||++|+.....+ ...+| .+++...... +..+
T Consensus 101 ~dg~v~lWd~~~~~~~-~~~~-~~~~~H~~~V~~v~~spdg~~l~sgs~d~-----~i~iwd~~~~~~~~~~~---~h~~ 170 (344)
T 4gqb_B 101 DSGAVELWELDENETL-IVSK-FCKYEHDDIVSTVSVLSSGTQAVSGSKDI-----CIKVWDLAQQVVLSSYR---AHAA 170 (344)
T ss_dssp TTSEEEEEEECTTSSC-EEEE-EEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC---CCSS
T ss_pred CCCEEEEEeccCCCce-eEee-ccccCCCCCEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEc---CcCC
Confidence 4445667777665431 1111 11112336689999999999998765543 34556 3444333322 1112
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
. +..+.|+|+++.++..+.. ...|.+||+.+
T Consensus 171 ~------V~~~~~~~~~~~~l~s~s~-------------------------------------------D~~v~iwd~~~ 201 (344)
T 4gqb_B 171 Q------VTCVAASPHKDSVFLSCSE-------------------------------------------DNRILLWDTRC 201 (344)
T ss_dssp C------EEEEEECSSCTTEEEEEET-------------------------------------------TSCEEEEETTS
T ss_pred c------eEEEEecCCCCCceeeecc-------------------------------------------ccccccccccc
Confidence 2 2789999999877665432 25699999998
Q ss_pred CceEee-cCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC
Q 005093 172 GEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 250 (715)
Q Consensus 172 g~~~~l-~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (715)
++.... ........+..+.|+|++.. ++.++. .+..|.++|+ ..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~p~~~~----~l~sg~--------------~dg~v~~wd~----------------~~~ 247 (344)
T 4gqb_B 202 PKPASQIGCSAPGYLPTSLAWHPQQSE----VFVFGD--------------ENGTVSLVDT----------------KST 247 (344)
T ss_dssp SSCEEECC----CCCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEES----------------CC-
T ss_pred cceeeeeecceeeccceeeeecCCCCc----ceEEec--------------cCCcEEEEEC----------------CCC
Confidence 875543 11122334668899998887 766653 2236788887 133
Q ss_pred CCceecCCCCccccceeEcCCCCe-EEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccc
Q 005093 251 LPVVNLTESISSAFFPRFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 329 (715)
Q Consensus 251 ~~~~~lt~~~~~~~~~~~spdg~~-l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g 329 (715)
.....+..+...+...+|||||.. |+-.+.+ ..|.++|+.+++...+..
T Consensus 248 ~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D-----------~~i~vwd~~~~~~~~~~~------------------- 297 (344)
T 4gqb_B 248 SCVLSSAVHSQCVTGLVFSPHSVPFLASLSED-----------CSLAVLDSSLSELFRSQA------------------- 297 (344)
T ss_dssp -CCEEEECCSSCEEEEEECSSSSCCEEEEETT-----------SCEEEECTTCCEEEEECC-------------------
T ss_pred cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC-----------CeEEEEECCCCcEEEEcC-------------------
Confidence 445566777778899999999965 4444443 248888887754321110
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 005093 330 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 330 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d 363 (715)
+...+..++|+|+++.++.+...++...+|.++
T Consensus 298 -H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 298 -HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp -CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred -CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 122456778999998888877766655565443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-10 Score=122.06 Aligned_cols=265 Identities=12% Similarity=0.072 Sum_probs=150.8
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
+.+...+|||||++|+.....+ . ..+| ..++....... ... .+..+.|+|||+.|+....+....
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg----~-i~i~~~~~~~~~~~~~---~~~------~v~~~~~~~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENG----E-LRLWNKTGALLNVLNF---HRA------PIVSVKWNKDGTHIISMDVENVTI 174 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTS----C-EEEEETTSCEEEEECC---CCS------CEEEEEECTTSSEEEEEETTCCEE
T ss_pred CceEEEEEcCCCCEEEEEeCCC----e-EEEEeCCCCeeeeccC---CCc------cEEEEEECCCCCEEEEEecCCeEE
Confidence 4689999999999999876542 2 3344 44444333321 111 237899999999998876543221
Q ss_pred CCCccCCCCCCCCCCcCCCC---------------CCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCcc
Q 005093 122 KPTFSLGSTKGGSSDKDCNS---------------WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSV 186 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 186 (715)
.|................ ....+.|.++ +..+.......|++||+.+++..... ......+
T Consensus 175 --iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~-~~~~~~i 250 (425)
T 1r5m_A 175 --LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKL-IGHHGPI 250 (425)
T ss_dssp --EEETTTTEEEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEE-CCCSSCE
T ss_pred --EEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeee-ccCCCce
Confidence 222111110000000000 0233445544 33334445578999999987654331 2334467
Q ss_pred ceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-CceecCCCCccccc
Q 005093 187 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFF 265 (715)
Q Consensus 187 ~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~ 265 (715)
..+.|+|+++. |+... .+..|.++|+ ..+ ....+......+..
T Consensus 251 ~~~~~~~~~~~----l~~~~---------------~d~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 251 SVLEFNDTNKL----LLSAS---------------DDGTLRIWHG-----------------GNGNSQNCFYGHSQSIVS 294 (425)
T ss_dssp EEEEEETTTTE----EEEEE---------------TTSCEEEECS-----------------SSBSCSEEECCCSSCEEE
T ss_pred EEEEECCCCCE----EEEEc---------------CCCEEEEEEC-----------------CCCccceEecCCCccEEE
Confidence 78999999986 66554 2236888887 433 34555556667889
Q ss_pred eeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCC
Q 005093 266 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 345 (715)
Q Consensus 266 ~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~ 345 (715)
..|+||| .|+..+.+ ..|+++|+.+++..... .. +...+..+.|+|+++
T Consensus 295 ~~~~~~~-~l~~~~~d-----------~~i~i~d~~~~~~~~~~----------~~---------~~~~i~~~~~s~~~~ 343 (425)
T 1r5m_A 295 ASWVGDD-KVISCSMD-----------GSVRLWSLKQNTLLALS----------IV---------DGVPIFAGRISQDGQ 343 (425)
T ss_dssp EEEETTT-EEEEEETT-----------SEEEEEETTTTEEEEEE----------EC---------TTCCEEEEEECTTSS
T ss_pred EEECCCC-EEEEEeCC-----------CcEEEEECCCCcEeEec----------cc---------CCccEEEEEEcCCCC
Confidence 9999999 56555443 25888898765431110 00 011345667999998
Q ss_pred EEEEEeeeCCeeEEEEEECCCCc--------------------E-EEecCCCC--CceeEEEeecCCEEEEEE
Q 005093 346 TMLLSSIWGSSQVIISVNVSSGE--------------------L-LRITPAES--NFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 346 ~l~~~~~~~~~~~l~~~d~~tg~--------------------~-~~l~~~~~--~~~~~~~s~~~~~l~~~~ 395 (715)
.|+. ...++ .|..+|+.+++ . ..+..... .+....|++++..|+...
T Consensus 344 ~l~~-~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 413 (425)
T 1r5m_A 344 KYAV-AFMDG--QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY 413 (425)
T ss_dssp EEEE-EETTS--CEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE
T ss_pred EEEE-EECCC--eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe
Confidence 5554 44444 45555666655 3 33333322 345557777777665443
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-09 Score=121.21 Aligned_cols=266 Identities=17% Similarity=0.104 Sum_probs=146.8
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEec--CCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
.+.+...+|||||++||-....+ ...+|+ .++......+. ...+ .+..++|||||++|+..+....
T Consensus 59 ~~~v~~~~~spdg~~lasg~~d~-----~v~lWd~~~~~~~~~~~~~-~~~~------~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 59 SHQTTVAKTSPSGYYCASGDVHG-----NVRIWDTTQTTHILKTTIP-VFSG------PVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTS-----EEEEEESSSTTCCEEEEEE-CSSS------CEEEEEECTTSCEEEEEECCSS
T ss_pred CCceEEEEECCCCcEEEEEeCCC-----CEEEeECCCCcceeeEeec-ccCC------ceEEEEECCCCCEEEEEECCCC
Confidence 36789999999999999776542 455662 33322222211 1111 2379999999999988765321
Q ss_pred C--CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCccc-CCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCC
Q 005093 120 P--SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 120 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~ 196 (715)
. ....+. .................+.|.|+....+ .......|.+||..+++....- ......+..++|+|||+
T Consensus 127 ~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~ 203 (611)
T 1nr0_A 127 RFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGS 203 (611)
T ss_dssp CSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSS
T ss_pred ceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCC
Confidence 1 111121 1111111122223344556777632212 2334578999998877654331 23334678899999999
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-ecC-------CCCccccceeE
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLT-------ESISSAFFPRF 268 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt-------~~~~~~~~~~~ 268 (715)
. |+..+ .+..|.++|+ .+++.. .+. .+...+...+|
T Consensus 204 ~----las~s---------------~D~~i~lwd~-----------------~~g~~~~~~~~~~~~~~~h~~~V~~v~~ 247 (611)
T 1nr0_A 204 L----FASTG---------------GDGTIVLYNG-----------------VDGTKTGVFEDDSLKNVAHSGSVFGLTW 247 (611)
T ss_dssp E----EEEEE---------------TTSCEEEEET-----------------TTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred E----EEEEE---------------CCCcEEEEEC-----------------CCCcEeeeeccccccccccCCCEEEEEE
Confidence 7 66554 2235777776 444332 231 34556888999
Q ss_pred cCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-c---------------------ccceeeeeeceecCCCC-
Q 005093 269 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-S---------------------LEKIVDVIPVVQCAEGD- 325 (715)
Q Consensus 269 spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-l---------------------t~~~~~~~~~~~~~~~~- 325 (715)
||||++|+-.+.+. .|.++|+.+++... + +...+..+.++......
T Consensus 248 spdg~~l~s~s~D~-----------~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~ 316 (611)
T 1nr0_A 248 SPDGTKIASASADK-----------TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSI 316 (611)
T ss_dssp CTTSSEEEEEETTS-----------EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEE
T ss_pred CCCCCEEEEEeCCC-----------eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCc
Confidence 99999998776553 36677766543211 1 00001111222211100
Q ss_pred --CccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 326 --CFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 326 --~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
.+. .+...+..++|+|||+.| ++...++ .+..+|+.+++...+.
T Consensus 317 ~~~~~-gh~~~v~~l~~spdg~~l-~s~s~D~--~v~~Wd~~~~~~~~~~ 362 (611)
T 1nr0_A 317 DQVRY-GHNKAITALSSSADGKTL-FSADAEG--HINSWDISTGISNRVF 362 (611)
T ss_dssp EEEEC-CCSSCEEEEEECTTSSEE-EEEETTS--CEEEEETTTCCEEECS
T ss_pred ceEEc-CCCCCEEEEEEeCCCCEE-EEEeCCC--cEEEEECCCCceeeec
Confidence 001 122345567899999855 4554444 4556688888877664
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-10 Score=118.56 Aligned_cols=130 Identities=12% Similarity=0.019 Sum_probs=79.3
Q ss_pred CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecC-----
Q 005093 183 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT----- 257 (715)
Q Consensus 183 ~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt----- 257 (715)
......++|||||+. +++... ....|.++++ .++..+.+.
T Consensus 210 ~~~~~~~~~spdg~~----l~v~~~--------------~~~~v~v~~~-----------------~~g~~~~~~~~~~~ 254 (361)
T 3scy_A 210 GSGPRHLIFNSDGKF----AYLINE--------------IGGTVIAFRY-----------------ADGMLDEIQTVAAD 254 (361)
T ss_dssp TCCEEEEEECTTSSE----EEEEET--------------TTCEEEEEEE-----------------ETTEEEEEEEEESC
T ss_pred CCCCeEEEEcCCCCE----EEEEcC--------------CCCeEEEEEe-----------------cCCceEEeEEEecC
Confidence 344568899999996 655541 2236777776 444332221
Q ss_pred -CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecC--CCCCCCcccceeeeeeceecCCCCCccccccCC
Q 005093 258 -ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 334 (715)
Q Consensus 258 -~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~--~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~ 334 (715)
........++|||||++|+...... ...|.+++++ ++..+.+. .... + ..
T Consensus 255 ~~~~~~~~~i~~spdg~~l~v~~~~~---------~~~i~v~~~~~~~g~~~~~~--------~~~~---g-------~~ 307 (361)
T 3scy_A 255 TVNAQGSGDIHLSPDGKYLYASNRLK---------ADGVAIFKVDETNGTLTKVG--------YQLT---G-------IH 307 (361)
T ss_dssp SSCCCCEEEEEECTTSSEEEEEECSS---------SCEEEEEEECTTTCCEEEEE--------EEEC---S-------SC
T ss_pred CCCCCCcccEEECCCCCEEEEECCCC---------CCEEEEEEEcCCCCcEEEee--------EecC---C-------CC
Confidence 1112346789999999886555431 1235555554 33321111 0000 0 12
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 005093 335 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
+..++|+|||+.|++.....+...+|.+|+++|+.+.+..
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~ 347 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK 347 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce
Confidence 4567899999988877666777889999999999887753
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-10 Score=125.96 Aligned_cols=222 Identities=19% Similarity=0.187 Sum_probs=141.8
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEe-cCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
+.+...++||||+.|+.....+ ...+| ..++...... .... +..+.|+|||+.|+....
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~-----~i~~w~~~~~~~~~~~~~~~~----------v~~~~~s~~g~~l~~~~~---- 364 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDK-----TVKLWNRNGQHLQTLTGHSSS----------VWGVAFSPDGQTIASASD---- 364 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEECCCSSC----------EEEEEECTTSSEEEEEET----
T ss_pred CCeEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCeeEEEeCCCCC----------EEEEEECCCCCEEEEEeC----
Confidence 5678899999999998775542 34556 3333222221 1122 268999999999987532
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCcc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
...|.+|+.++.....+ ......+..++|+|||+.
T Consensus 365 ----------------------------------------dg~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~dg~~--- 399 (577)
T 2ymu_A 365 ----------------------------------------DKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQT--- 399 (577)
T ss_dssp ----------------------------------------TSEEEEEETTCCEEEEE--ECCSSCEEEEEECTTSSC---
T ss_pred ----------------------------------------CCEEEEEcCCCCEEEEe--cCCCCCeEEEEECCCCCE---
Confidence 25588889766666666 334446778999999998
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEec
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
|+... .+..|.++|. .+.....+......+...+||||++.|+..+.
T Consensus 400 -l~~~~---------------~d~~v~~~~~-----------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 446 (577)
T 2ymu_A 400 -IASAS---------------DDKTVKLWNR-----------------NGQLLQTLTGHSSSVWGVAFSPDDQTIASASD 446 (577)
T ss_dssp -EEEEE---------------TTSEEEEECT-----------------TCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred -EEEEe---------------CCCEEEEEeC-----------------CCCEEEEecCCCCCeEEEEECCCCCEEEEEcC
Confidence 87665 2235777775 45555666667777888999999999987765
Q ss_pred CCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
+. .|.++|..+.....+.. +...+..++|+||++.| ++...++ .|.
T Consensus 447 d~-----------~v~~w~~~~~~~~~~~~--------------------~~~~v~~~~~spd~~~l-as~~~d~--~i~ 492 (577)
T 2ymu_A 447 DK-----------TVKLWNRNGQLLQTLTG--------------------HSSSVRGVAFSPDGQTI-ASASDDK--TVK 492 (577)
T ss_dssp TS-----------EEEEEETTSCEEEEEEC--------------------CSSCEEEEEECTTSCEE-EEEETTS--EEE
T ss_pred CC-----------EEEEEECCCCEEEEEcC--------------------CCCCEEEEEEcCCCCEE-EEEeCCC--EEE
Confidence 52 47777764422111111 11134567899999855 4444444 455
Q ss_pred EEECCCCcEEEecCCCCCceeEEEeecCCEEEEEE
Q 005093 361 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 361 ~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
.+|..+...+.+......+....|++++..|+...
T Consensus 493 iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 493 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp EEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence 55765455555555444455567888888665433
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-10 Score=121.55 Aligned_cols=176 Identities=9% Similarity=0.046 Sum_probs=101.1
Q ss_pred CCCCCcccCCcCcccC-CccCceEEEEEccCCceEeecCCCCC-----CccceEEEecCCCCCccEEEEEeecCccceee
Q 005093 142 WKGQGDWEEDWGETYA-GKRQPSLFVININSGEVQAVKGIPKS-----LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 215 (715)
Q Consensus 142 ~~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~l~~~~~~-----~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g 215 (715)
++....|.|+ |..++ ......+.+|+.++ ....+ . .. ..+..++|||||+. |+..+
T Consensus 87 ~V~~vawSPd-G~~LAs~s~dg~V~iwd~~~-~l~~l--~-~~~~~~~~sv~svafSPDG~~----LAsgs--------- 148 (588)
T 2j04_A 87 YPRVCKPSPI-DDWMAVLSNNGNVSVFKDNK-MLTNL--D-SKGNLSSRTYHCFEWNPIESS----IVVGN--------- 148 (588)
T ss_dssp CEEEEEECSS-SSCEEEEETTSCEEEEETTE-EEEEC--C-CSSCSTTTCEEEEEECSSSSC----EEEEE---------
T ss_pred cEEEEEECCC-CCEEEEEeCCCcEEEEeCCc-eeeec--c-CCCccccccEEEEEEcCCCCE----EEEEc---------
Confidence 3444555555 33332 22336789999654 33333 2 22 24778999999998 77765
Q ss_pred eeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc--------eec----CCCCccccceeEcCCCCeEEEEecCCC
Q 005093 216 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--------VNL----TESISSAFFPRFSPDGKFLVFLSAKSS 283 (715)
Q Consensus 216 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l----t~~~~~~~~~~~spdg~~l~~~~~~~~ 283 (715)
.++.|-.+|+ .++.. ..+ ..+...+...+||||| |+-.+.+.
T Consensus 149 ------~DGtVkIWd~-----------------~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~- 202 (588)
T 2j04_A 149 ------EDGELQFFSI-----------------RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNN- 202 (588)
T ss_dssp ------TTSEEEEEEC-----------------CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTC-
T ss_pred ------CCCEEEEEEC-----------------CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCC-
Confidence 2336777776 44432 333 3334578999999999 55444432
Q ss_pred CCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 005093 284 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 284 ~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d 363 (715)
.++++++.++....+... +.+.+...+..++|+ |+.|+ ++. . ..+..+|
T Consensus 203 ----------tVrlWd~~~~~~~~~~~t---------------L~~~h~~~V~svaFs--g~~LA-Sa~-~--~tIkLWd 251 (588)
T 2j04_A 203 ----------SVFSMTVSASSHQPVSRM---------------IQNASRRKITDLKIV--DYKVV-LTC-P--GYVHKID 251 (588)
T ss_dssp ----------CEEEECCCSSSSCCCEEE---------------EECCCSSCCCCEEEE--TTEEE-EEC-S--SEEEEEE
T ss_pred ----------eEEEEECCCCccccceee---------------ecccccCcEEEEEEE--CCEEE-EEe-C--CeEEEEE
Confidence 488888877653210000 000011246778898 45444 443 2 4777789
Q ss_pred CCCCcEEEec-CCCCCceeEEE--eecCCEEE
Q 005093 364 VSSGELLRIT-PAESNFSWSLL--TLDGDNII 392 (715)
Q Consensus 364 ~~tg~~~~l~-~~~~~~~~~~~--s~~~~~l~ 392 (715)
+.+++...+. .....+....| ++++..++
T Consensus 252 ~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La 283 (588)
T 2j04_A 252 LKNYSISSLKTGSLENFHIIPLNHEKESTILL 283 (588)
T ss_dssp TTTTEEEEEECSCCSCCCEEEETTCSSCEEEE
T ss_pred CCCCeEEEEEcCCCceEEEEEeeeCCCCCEEE
Confidence 8888885554 43344555677 77764443
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-10 Score=118.05 Aligned_cols=229 Identities=10% Similarity=0.020 Sum_probs=133.9
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecC-ccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
+.+...+||||++.|+ .... +.-.+|.+ ..++........ .+.. ..+..+.|||||++|+..+.
T Consensus 95 ~~V~~~~~s~d~~~l~-~s~d--g~v~lWd~-~~~~~~~~~~~~~~~h~------~~V~~v~~spdg~~l~sgs~----- 159 (357)
T 4g56_B 95 AGVTDVAWVSEKGILV-ASDS--GAVELWEI-LEKESLLVNKFAKYEHD------DIVKTLSVFSDGTQAVSGGK----- 159 (357)
T ss_dssp SCEEEEEEETTTEEEE-EETT--SCEEEC---------CCCCEEECCCS------SCEEEEEECSSSSEEEEEET-----
T ss_pred CCEEEEEEcCCCCEEE-EECC--CEEEEeec-cccceeEEEeeccCCCC------CCEEEEEECCCCCEEEEEeC-----
Confidence 5588999999997654 3332 33223322 222221111110 1111 12378999999999877532
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccE
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~ 201 (715)
...|.+||+++++..... ......+..++|+|+++.
T Consensus 160 ---------------------------------------dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~---- 195 (357)
T 4g56_B 160 ---------------------------------------DFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDT---- 195 (357)
T ss_dssp ---------------------------------------TSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSS----
T ss_pred ---------------------------------------CCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCc----
Confidence 256899999988765431 233446778899999987
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-ec--CCCCccccceeEcCCCCeEEEE
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NL--TESISSAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l--t~~~~~~~~~~~spdg~~l~~~ 278 (715)
++.++.. +..|.++|+ .+++.. .+ ......+...+|+|++..++.+
T Consensus 196 ~~~s~~~--------------dg~v~~wd~-----------------~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 196 IFLSCGE--------------DGRILLWDT-----------------RKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC 244 (357)
T ss_dssp CEEEEET--------------TSCEEECCT-----------------TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred eeeeecc--------------CCceEEEEC-----------------CCCceeeeeeeccccccccchhhhhcccceEEE
Confidence 6555432 235777786 444332 22 2234457789999997665544
Q ss_pred ecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 358 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 358 (715)
...+ ..|.++|+.+++....... +...+..++|+|++..++++...++.
T Consensus 245 g~~d----------~~i~~wd~~~~~~~~~~~~-------------------~~~~v~~l~~sp~~~~~lasgs~D~~-- 293 (357)
T 4g56_B 245 GDET----------GNVSLVNIKNPDSAQTSAV-------------------HSQNITGLAYSYHSSPFLASISEDCT-- 293 (357)
T ss_dssp EESS----------SCEEEEESSCGGGCEEECC-------------------CSSCEEEEEECSSSSCCEEEEETTSC--
T ss_pred eecc----------cceeEEECCCCcEeEEEec-------------------cceeEEEEEEcCCCCCEEEEEeCCCE--
Confidence 4332 2488889877543211100 11134567899998777777665554
Q ss_pred EEEEECCCCcEEEecCCCCCceeEEEee-cCCEEE
Q 005093 359 IISVNVSSGELLRITPAESNFSWSLLTL-DGDNII 392 (715)
Q Consensus 359 l~~~d~~tg~~~~l~~~~~~~~~~~~s~-~~~~l~ 392 (715)
|..+|+.+++..+.......+....|+| ++..|+
T Consensus 294 i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 294 VAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp EEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEE
T ss_pred EEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEE
Confidence 5556888898877765555455567887 455443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-10 Score=117.55 Aligned_cols=269 Identities=12% Similarity=0.093 Sum_probs=153.2
Q ss_pred cccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 40 VEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 40 ~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
.+.+.+...+|||||+.|+-....+ ...+| ..++......... ..+..+.|+|||+.|+..+.+
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDG-----KLIIWDSYTTNKVHAIPLRS---------SWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTT-----EEEEEETTTCCEEEEEECSS---------SCEEEEEECTTSSEEEEEETT
T ss_pred CCCCceEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCcceEeecCC---------ccEEEEEECCCCCEEEEEeCC
Confidence 3447789999999999998765543 45566 3333333322211 123689999999999876654
Q ss_pred CCCCCCCccCCCCCCCCC----CcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEec
Q 005093 118 PSPSKPTFSLGSTKGGSS----DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 193 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~sp 193 (715)
.... .|.......... ............|.++ +..+.......|.+||+++++..... ......+..+.|+|
T Consensus 119 ~~v~--iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~ 194 (340)
T 1got_B 119 NICS--IYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAP 194 (340)
T ss_dssp CEEE--EEETTTCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECT
T ss_pred CeEE--EEECccCCCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECC
Confidence 3211 122111100000 0011111122233333 23333334578999999988765431 23334677899999
Q ss_pred CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCccccceeEcCCC
Q 005093 194 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDG 272 (715)
Q Consensus 194 dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg 272 (715)
|++. ++..+ .+..|.++|+ .++. ...+......+....|+|||
T Consensus 195 ~~~~----l~sg~---------------~d~~v~~wd~-----------------~~~~~~~~~~~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 195 DTRL----FVSGA---------------CDASAKLWDV-----------------REGMCRQTFTGHESDINAICFFPNG 238 (340)
T ss_dssp TSSE----EEEEE---------------TTSCEEEEET-----------------TTCSEEEEECCCSSCEEEEEECTTS
T ss_pred CCCE----EEEEe---------------CCCcEEEEEC-----------------CCCeeEEEEcCCcCCEEEEEEcCCC
Confidence 9985 55443 2236778886 4443 44566667778899999999
Q ss_pred CeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEee
Q 005093 273 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 352 (715)
Q Consensus 273 ~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~ 352 (715)
+.|+..+.+. .|.++|+.+++..... .... ....+..+.|+|+|+.+ ++..
T Consensus 239 ~~l~s~s~d~-----------~v~iwd~~~~~~~~~~------------~~~~-----~~~~v~~~~~s~~g~~l-~~g~ 289 (340)
T 1got_B 239 NAFATGSDDA-----------TCRLFDLRADQELMTY------------SHDN-----IICGITSVSFSKSGRLL-LAGY 289 (340)
T ss_dssp SEEEEEETTS-----------CEEEEETTTTEEEEEE------------CCTT-----CCSCEEEEEECTTSSEE-EEEE
T ss_pred CEEEEEcCCC-----------cEEEEECCCCcEEEEE------------ccCC-----cccceEEEEECCCCCEE-EEEC
Confidence 9888766553 4788888764321100 0000 00124466799999855 4444
Q ss_pred eCCeeEEEEEECCCCcEEEe-cCCCCCceeEEEeecCCEEEE
Q 005093 353 WGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIA 393 (715)
Q Consensus 353 ~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~~~~~l~~ 393 (715)
.++ .+..+|+.+++.... ......+....|++++..|+.
T Consensus 290 ~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 290 DDF--NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp TTS--EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred CCC--eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEE
Confidence 444 566668777765543 333334444567777766553
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.4e-12 Score=136.47 Aligned_cols=133 Identities=23% Similarity=0.247 Sum_probs=93.6
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCC-CCCCCchhhhhcCCCCCC
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-GSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~r-G~~~~g~~~~~~~~~~~~ 537 (715)
+.|.+.+ .+|.|......+++|+||++|||++..+...........++.|++|+.+||| |..++........ .+
T Consensus 95 ~edcl~l--nv~~P~~~~~~~~~Pv~v~iHGG~~~~g~~~~~~~~~la~~~g~vvv~~nYRlg~~gf~~~~~~~~---~~ 169 (542)
T 2h7c_A 95 SEDCLYL--NIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHS---RG 169 (542)
T ss_dssp ESCCCEE--EEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTC---CC
T ss_pred CCCCcEE--EEEECCCCCCCCCCCEEEEECCCcccCCCccccCHHHHHhcCCEEEEecCCCCccccCCCCCcccC---cc
Confidence 3455555 5889986545578999999999887654432211122334589999999999 3323322211111 22
Q ss_pred ccchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhh--CCCceeEEEecCCcch
Q 005093 538 SQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 596 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~~ 596 (715)
...+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++.. .+.+|+++|+.+|...
T Consensus 170 n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~ 233 (542)
T 2h7c_A 170 NWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 233 (542)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCcc
Confidence 33478999999999875 24799999999999999999988875 3579999999998754
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-09 Score=113.37 Aligned_cols=286 Identities=12% Similarity=0.142 Sum_probs=148.5
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 123 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 123 (715)
.+...+|||||+.||..... +.-.+|.+ .++..........+..+. +..++|||||++|+..+.+....
T Consensus 18 ~v~~l~~sp~g~~las~~~D--~~i~iw~~-~~~~~~~~~~~~~~h~~~------v~~~~~sp~g~~l~s~s~D~~v~-- 86 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGD--RRIRIWGT-EGDSWICKSVLSEGHQRT------VRKVAWSPCGNYLASASFDATTC-- 86 (345)
T ss_dssp CEEEEEECTTSSCEEEEETT--SCEEEEEE-ETTEEEEEEEECSSCSSC------EEEEEECTTSSEEEEEETTSCEE--
T ss_pred cEEEEEECCCCCEEEEEcCC--CeEEEEEc-CCCcceeeeeeccccCCc------EEEEEECCCCCEEEEEECCCcEE--
Confidence 57889999999999877554 22233332 233222222222222222 37899999999998876554322
Q ss_pred CccCCCCC--CCCCCcCCCCCCCCCcccCCcCcccCC-ccCceEEEEEccCCceE----eecCCCCCCccceEEEecCCC
Q 005093 124 TFSLGSTK--GGSSDKDCNSWKGQGDWEEDWGETYAG-KRQPSLFVININSGEVQ----AVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 124 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~----~l~~~~~~~~~~~~~~spdg~ 196 (715)
.|...... ..............+.|.|+ |..++. .....|.+||+.++... .+ ......+..+.|+|||+
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVL--NSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCEEEEEEE--CCCCSCEEEEEECSSSS
T ss_pred EEEccCCCeEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCeEEEEEe--cCcCCCeEEEEECCCCC
Confidence 22211110 00001112233345567776 443332 33478999999876432 23 23334577899999999
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC---ceecCCCCccccceeEcCCCC
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGK 273 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~~~~~~~~spdg~ 273 (715)
. |+..+. +..|.++|+ ..+. ...+..+...+...+|||||+
T Consensus 164 ~----l~s~s~---------------d~~i~~w~~-----------------~~~~~~~~~~~~~h~~~v~~l~~sp~g~ 207 (345)
T 3fm0_A 164 L----LASASY---------------DDTVKLYRE-----------------EEDDWVCCATLEGHESTVWSLAFDPSGQ 207 (345)
T ss_dssp C----EEEEET---------------TSCEEEEEE-----------------ETTEEEEEEEECCCSSCEEEEEECTTSS
T ss_pred E----EEEEeC---------------CCcEEEEEe-----------------cCCCEEEEEEecCCCCceEEEEECCCCC
Confidence 8 776652 124555554 2332 234556667788999999999
Q ss_pred eEEEEecCCCCCCCCccccceeEeeecCCCC-CCCcc-cceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEe
Q 005093 274 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNG-NFSSL-EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 351 (715)
Q Consensus 274 ~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~-~~~lt-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~ 351 (715)
+|+..+.+. .|.+++....+ ...+. ...+.....+. .+.+.+...+..++|++++..+ ++.
T Consensus 208 ~l~s~s~D~-----------~v~iW~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~v~~~~~~~~l-~s~ 270 (345)
T 3fm0_A 208 RLASCSDDR-----------TVRIWRQYLPGNEQGVACSGSDPSWKCIC-----TLSGFHSRTIYDIAWCQLTGAL-ATA 270 (345)
T ss_dssp EEEEEETTS-----------CEEEEEEECTTCTTCCCCC---CEEEEEE-----EECSSCSSCEEEEEECTTTCCE-EEE
T ss_pred EEEEEeCCC-----------eEEEeccccCCCCccceeeccCCccceeE-----EecCCCCCcEEEEEEecCCCEE-EEE
Confidence 998777653 25555542211 11111 00000000000 0011122245567899999854 555
Q ss_pred eeCCeeEEEEEECCCCc----E---EEe-cCCCCCceeEEEeecCCEEEEEEe
Q 005093 352 IWGSSQVIISVNVSSGE----L---LRI-TPAESNFSWSLLTLDGDNIIAVSS 396 (715)
Q Consensus 352 ~~~~~~~l~~~d~~tg~----~---~~l-~~~~~~~~~~~~s~~~~~l~~~~~ 396 (715)
..++..++|.++..... . ..+ ......+....|+|++..++++.+
T Consensus 271 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 271 CGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp ETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 55666677766543211 0 011 112223444567777654444443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.21 E-value=8e-10 Score=112.32 Aligned_cols=270 Identities=14% Similarity=0.166 Sum_probs=149.0
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
.+.+...+|||||++||.....+ ...+| .+++....... ... .+..+.|+|||+.|+..+.+..
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~---h~~------~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTISG---HKL------GISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECC---CSS------CEEEEEECTTSSEEEEEETTSE
T ss_pred CCcEEEEEECCCCCEEEEeeCCC-----eEEEEeCCCcccchhhcc---CCC------ceEEEEEcCCCCEEEEECCCCE
Confidence 36689999999999998775543 34455 34444443321 111 2378999999999988765432
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCc
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
.. .|......................|.++....+.......|.+||+.+++..... ......+..+.|+|||+.
T Consensus 89 i~--vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~-- 163 (312)
T 4ery_A 89 LK--IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSL-- 163 (312)
T ss_dssp EE--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE--
T ss_pred EE--EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCE--
Confidence 21 2222111111111111222233445555222222334578999999988754331 333446778999999986
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecC-CCCccccceeEcCCCCeEEE
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT-ESISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt-~~~~~~~~~~~spdg~~l~~ 277 (715)
++... .+..|.++|+ .+++. ..+. ..........|+|||++|+.
T Consensus 164 --l~~~~---------------~d~~i~~wd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 164 --IVSSS---------------YDGLCRIWDT-----------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp --EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred --EEEEe---------------CCCcEEEEEC-----------------CCCceeeEEeccCCCceEEEEECCCCCEEEE
Confidence 66554 2236888887 44433 3333 23345677899999999887
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccc-cCCCEEEEEeeeCCe
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSS 356 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~dg~~l~~~~~~~~~ 356 (715)
.+.+. .|.++|+.+++...... ...... ......++ ++++ ++++...++
T Consensus 210 ~~~d~-----------~i~iwd~~~~~~~~~~~----------~~~~~~-------~~~~~~~~~~~~~-~l~sg~~dg- 259 (312)
T 4ery_A 210 ATLDN-----------TLKLWDYSKGKCLKTYT----------GHKNEK-------YCIFANFSVTGGK-WIVSGSEDN- 259 (312)
T ss_dssp EETTT-----------EEEEEETTTTEEEEEEC----------SSCCSS-------SCCCEEEECSSSC-EEEECCTTS-
T ss_pred EcCCC-----------eEEEEECCCCcEEEEEE----------ecCCce-------EEEEEEEEeCCCc-EEEEECCCC-
Confidence 66542 48888887654311100 000000 00112233 4554 555555444
Q ss_pred eEEEEEECCCCcEEEecC-CCCCceeEEEeecCCEEEEEE
Q 005093 357 QVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 357 ~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~~~~~l~~~~ 395 (715)
.|..+|+.+++...... ....+....+++++..++...
T Consensus 260 -~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 260 -LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp -CEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred -EEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 56667888887665443 333334456777777665444
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.8e-11 Score=123.38 Aligned_cols=233 Identities=9% Similarity=0.056 Sum_probs=130.8
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
+.+...+|||||++||..... +.-.+|.+.. +....+..+. +..+ .+..+.|+|||++|+..+.+
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d--~~i~iw~~~~-~~~~~~~~~~-~h~~------~v~~~~~s~~~~~l~s~s~d----- 76 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTAT--NQVELYEQDG-NGWKHARTFS-DHDK------IVTCVDWAPKSNRIVTCSQD----- 76 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSS--SCBCEEEEET-TEEEECCCBC-CCSS------CEEEEEECTTTCCEEEEETT-----
T ss_pred CcEEEEEECCCCCEEEEecCC--CEEEEEEccC-CceEEEEEEe-cCCc------eEEEEEEeCCCCEEEEEeCC-----
Confidence 457888999999988865433 3344444432 2112221111 1111 23789999999988876432
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc----eEeecCCCCCCccceEEEecCCCCC
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----~~~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
..|.+||+++++ ...+ ......+..+.|+|||+.
T Consensus 77 ---------------------------------------~~v~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~- 114 (377)
T 3dwl_C 77 ---------------------------------------RNAYVYEKRPDGTWKQTLVL--LRLNRAATFVRWSPNEDK- 114 (377)
T ss_dssp ---------------------------------------SSEEEC------CCCCEEEC--CCCSSCEEEEECCTTSSC-
T ss_pred ---------------------------------------CeEEEEEcCCCCceeeeeEe--cccCCceEEEEECCCCCE-
Confidence 558999998876 3333 334456788999999998
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC----ceecCC-CCccccceeEcCCCC
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNLTE-SISSAFFPRFSPDGK 273 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~lt~-~~~~~~~~~~spdg~ 273 (715)
|+... .+..|.++|+ .+++ ...+.. ....+..++|+|||+
T Consensus 115 ---l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 115 ---FAVGS---------------GARVISVCYF-----------------EQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp ---CEEEE---------------SSSCEEECCC----------------------CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred ---EEEEe---------------cCCeEEEEEE-----------------CCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 77765 2235777776 3333 455655 566789999999999
Q ss_pred eEEEEecCCCCCCCCccccceeEeeecCCCCCCCccc--------ceeeeeeceecCCCCCccccccCCCCCCccccCCC
Q 005093 274 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE--------KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 345 (715)
Q Consensus 274 ~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~ 345 (715)
.|+..+.+. .|.++|+..++...... ......... . +...+..+.|+|||+
T Consensus 160 ~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 160 LLAAGCADR-----------KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--P--------SGGWVHAVGFSPSGN 218 (377)
T ss_dssp EEEEEESSS-----------CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--C--------CSSSEEEEEECTTSS
T ss_pred EEEEEeCCC-----------EEEEEEEEecccCCCccccccccccchhhhhhcc--c--------CCceEEEEEECCCCC
Confidence 888777653 37777775433211000 001111110 0 112355678999998
Q ss_pred EEEEEeeeCCeeEEEEEECCCCcE-----EEecCCCCCceeEEEeecCCEE
Q 005093 346 TMLLSSIWGSSQVIISVNVSSGEL-----LRITPAESNFSWSLLTLDGDNI 391 (715)
Q Consensus 346 ~l~~~~~~~~~~~l~~~d~~tg~~-----~~l~~~~~~~~~~~~s~~~~~l 391 (715)
.|+. ...++ .|..+|+.+++. ..+......+....|++++..|
T Consensus 219 ~l~~-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 266 (377)
T 3dwl_C 219 ALAY-AGHDS--SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIV 266 (377)
T ss_dssp CEEE-EETTT--EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEE
T ss_pred EEEE-EeCCC--cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEE
Confidence 5544 44444 455556666654 2333333334556788887544
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-10 Score=126.18 Aligned_cols=226 Identities=15% Similarity=0.083 Sum_probs=138.2
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEE-ecCccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
.+.....+|||||++||+.... . ..+| .+++..... ..... +..++|||||++||-.+.
T Consensus 18 ~g~~~~~~~spdg~~l~~~~~~-----~-v~l~~~~~~~~~~~~~~h~~~----------v~~~~~spdg~~lasg~~-- 79 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCNGT-----S-VYTVPVGSLTDTEIYTEHSHQ----------TTVAKTSPSGYYCASGDV-- 79 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEETT-----E-EEEEETTCSSCCEEECCCSSC----------EEEEEECTTSSEEEEEET--
T ss_pred cCceeEEeeCCCCCEEEeCCCC-----E-EEEecCCCcccCeEecCCCCc----------eEEEEECCCCcEEEEEeC--
Confidence 3667788999999999987532 2 3345 334433333 22222 278999999999987543
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE---eecCCCCCCccceEEEecCC
Q 005093 119 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLN 195 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~---~l~~~~~~~~~~~~~~spdg 195 (715)
...|.+||+++++.. .+ ......+..++|||||
T Consensus 80 ------------------------------------------d~~v~lWd~~~~~~~~~~~~--~~~~~~v~~v~fs~dg 115 (611)
T 1nr0_A 80 ------------------------------------------HGNVRIWDTTQTTHILKTTI--PVFSGPVKDISWDSES 115 (611)
T ss_dssp ------------------------------------------TSEEEEEESSSTTCCEEEEE--ECSSSCEEEEEECTTS
T ss_pred ------------------------------------------CCCEEEeECCCCcceeeEee--cccCCceEEEEECCCC
Confidence 256999999765422 23 1223467889999999
Q ss_pred CCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCe-
Q 005093 196 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF- 274 (715)
Q Consensus 196 ~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~- 274 (715)
+. |+..+...+ +...|+.+|. +.....+..+...+..+.|+||++.
T Consensus 116 ~~----l~~~~~~~~-----------~~~~v~~wd~------------------~~~~~~l~gh~~~v~~v~f~p~~~~~ 162 (611)
T 1nr0_A 116 KR----IAAVGEGRE-----------RFGHVFLFDT------------------GTSNGNLTGQARAMNSVDFKPSRPFR 162 (611)
T ss_dssp CE----EEEEECCSS-----------CSEEEEETTT------------------CCBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred CE----EEEEECCCC-----------ceeEEEEeeC------------------CCCcceecCCCCCceEEEECCCCCeE
Confidence 98 876653211 1135666663 3344456667778899999999985
Q ss_pred EEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeC
Q 005093 275 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 354 (715)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~ 354 (715)
|+..+.+. .+.++|..+++.... +.+ +...+..++|+|||+. +++...+
T Consensus 163 l~s~s~D~-----------~v~lwd~~~~~~~~~------------------l~~-H~~~V~~v~fspdg~~-las~s~D 211 (611)
T 1nr0_A 163 IISGSDDN-----------TVAIFEGPPFKFKST------------------FGE-HTKFVHSVRYNPDGSL-FASTGGD 211 (611)
T ss_dssp EEEEETTS-----------CEEEEETTTBEEEEE------------------ECC-CSSCEEEEEECTTSSE-EEEEETT
T ss_pred EEEEeCCC-----------eEEEEECCCCeEeee------------------ecc-ccCceEEEEECCCCCE-EEEEECC
Confidence 55444442 367777655322100 000 1123456789999984 4555555
Q ss_pred CeeEEEEEECCCCcEEEecC--------CCCCceeEEEeecCCEEEEEE
Q 005093 355 SSQVIISVNVSSGELLRITP--------AESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 355 ~~~~l~~~d~~tg~~~~l~~--------~~~~~~~~~~s~~~~~l~~~~ 395 (715)
+ .+..+|+.+++...... ....+....|++++..|+...
T Consensus 212 ~--~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 212 G--TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp S--CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred C--cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe
Confidence 5 45556777777655442 223344467888888775443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-08 Score=106.79 Aligned_cols=246 Identities=10% Similarity=0.045 Sum_probs=146.1
Q ss_pred cccceEEeeCC-CCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 42 MTGASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 42 ~~~~~~~~~Sp-dg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
.+.+...+||| +++.|+.....+ ...+| ..+............. ..+..+.|+|||+.|+....
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~--- 183 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRG-----ATTLRDFSGSVIQVFAKTDSWD------YWYCCVDVSVSRQMLATGDS--- 183 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTT-----EEEEEETTSCEEEEEECCCCSS------CCEEEEEEETTTTEEEEEET---
T ss_pred CCceeEEEeCCCCCCEEEEEeCCC-----EEEEEECCCCceEEEeccCCCC------CCeEEEEECCCCCEEEEECC---
Confidence 36789999999 667776654432 34556 3333333332222211 12379999999998877532
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCc
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
...|++||+++.....+ ......+..++|+|+++.
T Consensus 184 -----------------------------------------d~~i~i~d~~~~~~~~~--~~h~~~v~~~~~~~~~~~-- 218 (383)
T 3ei3_B 184 -----------------------------------------TGRLLLLGLDGHEIFKE--KLHKAKVTHAEFNPRCDW-- 218 (383)
T ss_dssp -----------------------------------------TSEEEEEETTSCEEEEE--ECSSSCEEEEEECSSCTT--
T ss_pred -----------------------------------------CCCEEEEECCCCEEEEe--ccCCCcEEEEEECCCCCC--
Confidence 26799999976666666 334456788999999997
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC----CCceecCCCCccccceeEcC-CCCe
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED----LPVVNLTESISSAFFPRFSP-DGKF 274 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lt~~~~~~~~~~~sp-dg~~ 274 (715)
+++++. .+..|.++|+ .. +...........+..+.|+| ||+.
T Consensus 219 --~l~s~~--------------~d~~i~iwd~-----------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 219 --LMATSS--------------VDATVKLWDL-----------------RNIKDKNSYIAEMPHEKPVNAAYFNPTDSTK 265 (383)
T ss_dssp --EEEEEE--------------TTSEEEEEEG-----------------GGCCSTTCEEEEEECSSCEEEEEECTTTSCE
T ss_pred --EEEEEe--------------CCCEEEEEeC-----------------CCCCcccceEEEecCCCceEEEEEcCCCCCE
Confidence 666653 2236888887 32 33333335566788999999 9999
Q ss_pred EEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee
Q 005093 275 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 353 (715)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~ 353 (715)
|+..+.+. .|.++|+.++.... +...... .+ .+. ..-...|+|++..+.+....
T Consensus 266 l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~-----------~~--~~~-~~~~~~~~p~~~~~~~~~s~ 320 (383)
T 3ei3_B 266 LLTTDQRN-----------EIRVYSSYDWSKPDQIIIHPHR-----------QF--QHL-TPIKATWHPMYDLIVAGRYP 320 (383)
T ss_dssp EEEEESSS-----------EEEEEETTBTTSCSEEEECCBC-----------CC--TTS-CCCCCEECSSSSEEEEECBC
T ss_pred EEEEcCCC-----------cEEEEECCCCcccccccccccc-----------cc--ccc-cceEEeccCCCCceEEEecC
Confidence 88776542 48889987755421 1100000 00 000 11224566666655443321
Q ss_pred ------CCeeEEEEEECCCCcEEEecCC---CCCceeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 005093 354 ------GSSQVIISVNVSSGELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 409 (715)
Q Consensus 354 ------~~~~~l~~~d~~tg~~~~l~~~---~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~ 409 (715)
.....|..+|+.+++....... ........|++++..|+.. + + ..|.+.++
T Consensus 321 dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~-s--d--~~i~iw~~ 380 (383)
T 3ei3_B 321 DDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-M--G--FNILIWNR 380 (383)
T ss_dssp CTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE-E--T--TEEEEEEC
T ss_pred CcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe-c--C--CcEEEEec
Confidence 1235677789888886554432 2334445788988866544 3 2 34655554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-09 Score=111.54 Aligned_cols=142 Identities=9% Similarity=0.025 Sum_probs=76.9
Q ss_pred ccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccc
Q 005093 12 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVH 90 (715)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 90 (715)
......|+++|+.+... .+....+ .......++|||||+++++... ....++.++ .+++....+.......
T Consensus 17 ~~~~~~v~~~d~~~~~~--~~~~~~~---~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~~~~~ 88 (349)
T 1jmx_B 17 TNYPNNLHVVDVASDTV--YKSCVMP---DKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSSVPG 88 (349)
T ss_dssp EETTTEEEEEETTTTEE--EEEEECS---SCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred eCCCCeEEEEECCCCcE--EEEEecC---CCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcccccc
Confidence 34456788877655421 2111111 0114678899999987766643 233577666 5566555554422100
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
.. ......+.|||||++|++.......... .| +. ....|++||++
T Consensus 89 ~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~-----------------------~~----~~-----~~~~i~~~d~~ 133 (349)
T 1jmx_B 89 EV---GRSMYSFAISPDGKEVYATVNPTQRLND-----------------------HY----VV-----KPPRLEVFSTA 133 (349)
T ss_dssp EE---EECSSCEEECTTSSEEEEEEEEEEECSS-----------------------CE----EE-----CCCEEEEEEGG
T ss_pred cc---cccccceEECCCCCEEEEEccccccccc-----------------------cc----cc-----CCCeEEEEECC
Confidence 00 0012689999999999887643110000 00 00 13689999999
Q ss_pred CCceEeec-CCCCCCccceEEEecCCC
Q 005093 171 SGEVQAVK-GIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 171 ~g~~~~l~-~~~~~~~~~~~~~spdg~ 196 (715)
+++..... .......+..++|+|||+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 134 DGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp GGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred CccccceeeeccCCCcccceeECCCCc
Confidence 86543221 011222456778999997
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-09 Score=115.26 Aligned_cols=272 Identities=7% Similarity=0.066 Sum_probs=149.8
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCC---ccEEEEecCcccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS---QLEKEFHVPQTVH 90 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~ 90 (715)
...|+++++.+..... .+.. + .....+...+|||||++|+.....+ ...+| ... ....+..+. ...
T Consensus 44 d~~v~iw~~~~~~~~~-~~~~--~-~~~~~v~~~~~s~~~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~~~-~h~ 113 (416)
T 2pm9_A 44 DSSLELWSLLAADSEK-PIAS--L-QVDSKFNDLDWSHNNKIIAGALDNG-----SLELYSTNEANNAINSMARFS-NHS 113 (416)
T ss_dssp CCCCEEEESSSGGGCS-CSCC--C-CCSSCEEEEEECSSSSCEEEEESSS-----CEEEECCSSTTSCCCEEEECC-CSS
T ss_pred CCeEEEEEccCCCCCc-EEEE--E-ecCCceEEEEECCCCCeEEEEccCC-----eEEEeecccccccccchhhcc-CCc
Confidence 3456666676554210 1110 1 1225689999999999998876542 23344 111 111222221 111
Q ss_pred ccccCCCcccceeecCC-CCeEEEEeecCCCCCCCccCCCCC------CC---CCCcCCCCCCCCCcccCCcCcccC-Cc
Q 005093 91 GSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSLGSTK------GG---SSDKDCNSWKGQGDWEEDWGETYA-GK 159 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpD-g~~la~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~g~~~~-~~ 159 (715)
+ .+..+.|+|| ++.|+..+.+... ..|...... .. ............+.|.++.+..+. ..
T Consensus 114 ~------~v~~~~~~~~~~~~l~s~~~dg~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 185 (416)
T 2pm9_A 114 S------SVKTVKFNAKQDNVLASGGNNGEI--FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG 185 (416)
T ss_dssp S------CCCEEEECSSSTTBEEEECSSSCE--EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES
T ss_pred c------ceEEEEEcCCCCCEEEEEcCCCeE--EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc
Confidence 1 2379999999 6766665544322 223322221 00 001122333445667766333332 23
Q ss_pred cCceEEEEEccCCceEeecCCCC-----CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccc
Q 005093 160 RQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 234 (715)
Q Consensus 160 ~~~~l~~~~~~~g~~~~l~~~~~-----~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 234 (715)
....|.+||+.+++......... ...+..+.|+|+|.. +++++..++ ....|.++|+
T Consensus 186 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~~d~-----------~~~~i~~~d~--- 247 (416)
T 2pm9_A 186 SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST----RVATATGSD-----------NDPSILIWDL--- 247 (416)
T ss_dssp SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT----EEEEEECCS-----------SSCCCCEEET---
T ss_pred CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC----EEEEEECCC-----------CCceEEEEeC---
Confidence 45789999999887654321111 456788999999987 776653221 1125777886
Q ss_pred cchhhhhhhhccCCCCC--CceecC-CCCccccceeEcC-CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCccc
Q 005093 235 KSEASELELKESSSEDL--PVVNLT-ESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 310 (715)
Q Consensus 235 ~~~~~~~~~~~~~~~~~--~~~~lt-~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~ 310 (715)
.++ ....+. .....+..+.|+| |++.|+..+.+. .|.++|+.+++.....
T Consensus 248 --------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg-----------~v~~wd~~~~~~~~~~- 301 (416)
T 2pm9_A 248 --------------RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN-----------TVLLWNPESAEQLSQF- 301 (416)
T ss_dssp --------------TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS-----------EEEEECSSSCCEEEEE-
T ss_pred --------------CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC-----------CEEEeeCCCCccceee-
Confidence 332 333444 4566788999999 888887666542 4888888775431100
Q ss_pred ceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 005093 311 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 368 (715)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~ 368 (715)
. .+...+..+.|+||+..++++...++...| +|+.++.
T Consensus 302 ---------~---------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~i--w~~~~~~ 339 (416)
T 2pm9_A 302 ---------P---------ARGNWCFKTKFAPEAPDLFACASFDNKIEV--QTLQNLT 339 (416)
T ss_dssp ---------E---------CSSSCCCCEEECTTCTTEEEECCSSSEEEE--EESCCCC
T ss_pred ---------c---------CCCCceEEEEECCCCCCEEEEEecCCcEEE--EEccCCC
Confidence 0 011245678899999446666665554444 5655544
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.16 E-value=6.1e-09 Score=108.42 Aligned_cols=234 Identities=9% Similarity=0.065 Sum_probs=133.4
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
+.+...+|||||+.||.....+ . ..+| .+++...+..+. ...+ .+..+.|+|||+.|+..+.
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~----~-v~i~~~~~~~~~~~~~~~-~h~~------~v~~~~~~~~~~~l~~~~~---- 72 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNH----E-VHIYEKSGNKWVQVHELK-EHNG------QVTGVDWAPDSNRIVTCGT---- 72 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSS----E-EEEEEEETTEEEEEEEEE-CCSS------CEEEEEEETTTTEEEEEET----
T ss_pred CCeEEEEECCCCCEEEEEeCCC----E-EEEEeCCCCcEEeeeeec-CCCC------cccEEEEeCCCCEEEEEcC----
Confidence 5688999999999998774432 2 3344 344321222221 1111 2379999999998887532
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec-CCCCCCccceEEEecCCCCCc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~-~~~~~~~~~~~~~spdg~~~~ 199 (715)
...|.+||+++++..... -......+..+.|+|||+.
T Consensus 73 ----------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 110 (372)
T 1k8k_C 73 ----------------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK-- 110 (372)
T ss_dssp ----------------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE--
T ss_pred ----------------------------------------CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCE--
Confidence 256999999888743321 0233446778999999987
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC----ceec-CCCCccccceeEcCCCCe
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNL-TESISSAFFPRFSPDGKF 274 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l-t~~~~~~~~~~~spdg~~ 274 (715)
|+... .+..|.++|+ ..+. ...+ ......+....|+|||+.
T Consensus 111 --l~~~~---------------~d~~v~i~d~-----------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 111 --FAVGS---------------GSRVISICYF-----------------EQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp --EEEEE---------------TTSSEEEEEE-----------------ETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred --EEEEe---------------CCCEEEEEEe-----------------cCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 66654 1224556565 2222 2233 333556888999999998
Q ss_pred EEEEecCCCCCCCCccccceeEeeecCCCCCCCccc--------ceeeeeeceecCCCCCccccccCCCCCCccccCCCE
Q 005093 275 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE--------KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 346 (715)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~ 346 (715)
|+..+.+. .|+++|+.......-.. ........+ . .+...+..+.|+|+++.
T Consensus 157 l~~~~~dg-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~v~~~~~~~~~~~ 216 (372)
T 1k8k_C 157 LAAGSCDF-----------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES--------S-SSCGWVHGVCFSANGSR 216 (372)
T ss_dssp EEEEETTS-----------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC--------C-CCSSCEEEEEECSSSSE
T ss_pred EEEEcCCC-----------CEEEEEcccccccccccccccccccchhhheEec--------C-CCCCeEEEEEECCCCCE
Confidence 88766542 37777764322110000 000000000 0 01123456789999985
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEEec-CCCCCceeEEEeecCCEE
Q 005093 347 MLLSSIWGSSQVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNI 391 (715)
Q Consensus 347 l~~~~~~~~~~~l~~~d~~tg~~~~l~-~~~~~~~~~~~s~~~~~l 391 (715)
|+. ...++ .|..+|+.+++..... .....+....|++++..+
T Consensus 217 l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 259 (372)
T 1k8k_C 217 VAW-VSHDS--TVCLADADKKMAVATLASETLPLLAVTFITESSLV 259 (372)
T ss_dssp EEE-EETTT--EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE
T ss_pred EEE-EeCCC--EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEE
Confidence 554 44344 5667788777755443 333344556788876533
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-09 Score=111.66 Aligned_cols=190 Identities=11% Similarity=0.016 Sum_probs=116.9
Q ss_pred cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEee
Q 005093 98 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV 177 (715)
Q Consensus 98 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l 177 (715)
++..++|||||++|+..+.. ....|.+||+++++....
T Consensus 135 ~~~~v~fSpDg~~la~as~~------------------------------------------~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSK------------------------------------------VPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CEEEEEECTTSSCEEEEESC------------------------------------------SSCEEEEEETTTTEEEEE
T ss_pred CEEEEEEcCCCCEEEEEECC------------------------------------------CCCEEEEeECCCCcEEEE
Confidence 34678999999999886432 126799999999886654
Q ss_pred cCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eec
Q 005093 178 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL 256 (715)
Q Consensus 178 ~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l 256 (715)
......+..++|||||+. |+..+. ..+.+++. .++.. ...
T Consensus 173 --~~~~~~V~~v~fspdg~~----l~s~s~----------------~~~~~~~~-----------------~~~~~~~~~ 213 (365)
T 4h5i_A 173 --IETRGEVKDLHFSTDGKV----VAYITG----------------SSLEVIST-----------------VTGSCIARK 213 (365)
T ss_dssp --EECSSCCCEEEECTTSSE----EEEECS----------------SCEEEEET-----------------TTCCEEEEE
T ss_pred --eCCCCceEEEEEccCCce----EEeccc----------------eeEEEEEe-----------------ccCcceeee
Confidence 233445789999999997 776541 14556664 33332 222
Q ss_pred --CCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCC
Q 005093 257 --TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 334 (715)
Q Consensus 257 --t~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~ 334 (715)
......+...+|||||+.++..+.+.. ....++.+++.......+.. ..+ .. +...
T Consensus 214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~-------~~~~i~~~~~~~~~~~~~~~-----~~~--~~--------~~~~ 271 (365)
T 4h5i_A 214 TDFDKNWSLSKINFIADDTVLIAASLKKG-------KGIVLTKISIKSGNTSVLRS-----KQV--TN--------RFKG 271 (365)
T ss_dssp CCCCTTEEEEEEEEEETTEEEEEEEESSS-------CCEEEEEEEEETTEEEEEEE-----EEE--ES--------SCSC
T ss_pred ecCCCCCCEEEEEEcCCCCEEEEEecCCc-------ceeEEeecccccceecceee-----eee--cC--------CCCC
Confidence 223445788999999999988876642 22346666655433211100 000 00 1113
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecC-CCCCceeEEEeecCCEEEE
Q 005093 335 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITP-AESNFSWSLLTLDGDNIIA 393 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~-~~~~~~~~~~s~~~~~l~~ 393 (715)
+..++|+|||+.| ++...++ .+..+|+.+++... +.. ....+....|+||+..|+-
T Consensus 272 V~~~~~Spdg~~l-asgs~D~--~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS 329 (365)
T 4h5i_A 272 ITSMDVDMKGELA-VLASNDN--SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS 329 (365)
T ss_dssp EEEEEECTTSCEE-EEEETTS--CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred eEeEEECCCCCce-EEEcCCC--EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence 4567899999855 4444444 45566888888654 333 3344555789999887653
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-08 Score=102.37 Aligned_cols=260 Identities=10% Similarity=0.021 Sum_probs=143.6
Q ss_pred eEEeeCCCCceEEEEecC------CCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 46 SAVVPSPSGSKLLVVRNP------ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
..+++||||++|++.... +.....+..++ .+.+....+.+....+ .-.......+.|||||++|++.....
T Consensus 69 p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~--~~~g~~p~~~~~spDG~~l~v~n~~~ 146 (373)
T 2mad_H 69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR--FDVGPYSWMNANTPNNADLLFFQFAA 146 (373)
T ss_pred CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc--cccCCCccceEECCCCCEEEEEecCC
Confidence 388999999999776531 11223455666 4445444444331100 00001125899999999998864321
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEee-cCCCCCCccceEEEecCCCC
Q 005093 119 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l-~~~~~~~~~~~~~~spdg~~ 197 (715)
...|.++| +++++... ...+. .+.+.|++++
T Consensus 147 ------------------------------------------~~~v~viD-~t~~~~~~~i~~~~-----~~~~~~~~~~ 178 (373)
T 2mad_H 147 ------------------------------------------GPAVGLVV-QGGSSDDQLLSSPT-----CYHIHPGAPS 178 (373)
T ss_pred ------------------------------------------CCeEEEEE-CCCCEEeEEcCCCc-----eEEEEeCCCc
Confidence 26699999 99876533 21211 2456788876
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-ec------CCCCccccceeEcC
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NL------TESISSAFFPRFSP 270 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l------t~~~~~~~~~~~sp 270 (715)
.++.... ...+..+|+ ++... .. .........+.+++
T Consensus 179 ----~~~~~~~--------------dg~~~~vd~------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 179 ----TFYLLCA--------------QGGLAKTDH------------------AGGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred ----eEEEEcC--------------CCCEEEEEC------------------CCcEEEEEeccccccCCcceeecceeEe
Confidence 5544321 224556652 11111 11 11111234478899
Q ss_pred CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccccc-CCCCCCccccCCCEEEE
Q 005093 271 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS-SSILSNPWLSDGCTMLL 349 (715)
Q Consensus 271 dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~dg~~l~~ 349 (715)
++..++|.+.. .+++++|+.++..+.+. . .. +.... ....+ |. .+...+.+++|++.+|+
T Consensus 223 ~~~~~~~~~~~-----------~~v~vid~~~~~~~v~~-~-~~---~~~~~--~~~~~-~~p~g~~~~~~s~d~~~lyV 283 (373)
T 2mad_H 223 KSGRIVWPVYS-----------GKILQADISAAGATNKA-P-ID---ALSGG--RKADT-WRPGGWQQVAYLKSSDGIYL 283 (373)
T ss_pred cCCEEEEEcCC-----------ceEEEEeccCCcceEee-e-ee---ecCCc--ccccc-eecCceEeEEECCCCCEEEE
Confidence 99988888743 25999998765432211 0 00 00000 00000 10 11223567899998888
Q ss_pred EeeeC-------CeeEEEEEECCCCcE-EEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 350 SSIWG-------SSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 350 ~~~~~-------~~~~l~~~d~~tg~~-~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
..... ....|+.+|++++++ ..|..+. ......+++|++.++++.... ...|.++|..+.+
T Consensus 284 ~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~~ 352 (373)
T 2mad_H 284 LTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAG--TEVLHIYDAGAGD 352 (373)
T ss_pred EeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCC--CCeEEEEECCCCC
Confidence 65432 235799999999887 4554333 234568999999666654322 2468888976553
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-11 Score=133.48 Aligned_cols=134 Identities=18% Similarity=0.186 Sum_probs=90.8
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc-ch--HHHH-HHH-hCCcEEEEEcCCCCCCCchhhhhcC-
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS--KSLA-FLS-SVGYSLLIVNYRGSLGFGEEALQSL- 532 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~-~~--~~~~-~la-~~G~~vi~~d~rG~~~~g~~~~~~~- 532 (715)
+.|.+.+ .+|.|......++.|+||++|||++..+... +. .++. .++ ..|++|+.+|||... +|--.....
T Consensus 102 sedcl~l--~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~-~gf~~~~~~~ 178 (544)
T 1thg_A 102 NEDCLYL--NVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGP-FGFLGGDAIT 178 (544)
T ss_dssp CSCCCEE--EEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHH-HHHCCSHHHH
T ss_pred CCCCeEE--EEEeCCCCCCCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCc-ccCCCccccc
Confidence 3455555 5888976545578999999999988765432 21 1222 222 358999999999743 111000000
Q ss_pred CCCCCccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhC--------CCceeEEEecCCcc
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLC 595 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~~~~ 595 (715)
....+...+.|+.++++|+.++. ..|+++|.|+|+|+||.+++.++... +.+|+++|+.+|..
T Consensus 179 ~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~~ 252 (544)
T 1thg_A 179 AEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGP 252 (544)
T ss_dssp HHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCC
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEecccc
Confidence 00123334889999999998862 47999999999999999998777642 45899999999853
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-09 Score=110.51 Aligned_cols=212 Identities=15% Similarity=0.102 Sum_probs=121.7
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCcccc---c------cccCCCcccceeecCCCCeEEE
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVH---G------SVYADGWFEGISWNSDETLIAY 113 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~wSpDg~~la~ 113 (715)
+.+...+|||||++||...+ +..++|.+ .+|+....+....... . ..-.+..+..+.|||||++|+.
T Consensus 65 ~~V~~v~fspdg~~la~g~~---~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGCN---KTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp SCCCEEEECTTSSEEEEECB---SCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CEEEEEEECCCCCEEEEEcC---CcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 56788999999999987543 22222222 3443333221110000 0 0001113478999999999887
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEec
Q 005093 114 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 193 (715)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~sp 193 (715)
.+. ...|.+||+++++..... ......+..+.|+|
T Consensus 141 ~~~--------------------------------------------d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p 175 (393)
T 1erj_A 141 GAE--------------------------------------------DRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFP 175 (393)
T ss_dssp EET--------------------------------------------TSCEEEEETTTTEEEEEE-CCCSSCEEEEEECT
T ss_pred EcC--------------------------------------------CCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcC
Confidence 533 256999999988765431 23344677899999
Q ss_pred CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcC-CC
Q 005093 194 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP-DG 272 (715)
Q Consensus 194 dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~sp-dg 272 (715)
||+. |+..+ .+..|.++|+ .+++...............|+| ||
T Consensus 176 ~~~~----l~s~s---------------~d~~v~iwd~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 176 SGDK----LVSGS---------------GDRTVRIWDL-----------------RTGQCSLTLSIEDGVTTVAVSPGDG 219 (393)
T ss_dssp TSSE----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECSSCEEEEEECSTTC
T ss_pred CCCE----EEEec---------------CCCcEEEEEC-----------------CCCeeEEEEEcCCCcEEEEEECCCC
Confidence 9997 76554 2236778887 5555443333444577889999 88
Q ss_pred CeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEe
Q 005093 273 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 351 (715)
Q Consensus 273 ~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~ 351 (715)
+.|+..+.+. .|.++|+.++.... +.... .... .+...+..+.|+|||+.| ++.
T Consensus 220 ~~l~~~s~d~-----------~v~iwd~~~~~~~~~~~~~~------------~~~~-~h~~~v~~v~~~~~g~~l-~s~ 274 (393)
T 1erj_A 220 KYIAAGSLDR-----------AVRVWDSETGFLVERLDSEN------------ESGT-GHKDSVYSVVFTRDGQSV-VSG 274 (393)
T ss_dssp CEEEEEETTS-----------CEEEEETTTCCEEEEEC------------------C-CCSSCEEEEEECTTSSEE-EEE
T ss_pred CEEEEEcCCC-----------cEEEEECCCCcEEEeecccc------------cCCC-CCCCCEEEEEECCCCCEE-EEE
Confidence 8887766553 37788877654311 10000 0000 012234567899999855 555
Q ss_pred eeCCeeEEEEEECCC
Q 005093 352 IWGSSQVIISVNVSS 366 (715)
Q Consensus 352 ~~~~~~~l~~~d~~t 366 (715)
..++...|| |+.+
T Consensus 275 s~d~~v~~w--d~~~ 287 (393)
T 1erj_A 275 SLDRSVKLW--NLQN 287 (393)
T ss_dssp ETTSEEEEE--EC--
T ss_pred eCCCEEEEE--ECCC
Confidence 555555555 5543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-09 Score=126.03 Aligned_cols=237 Identities=11% Similarity=0.023 Sum_probs=150.2
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEe-cCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
+.+...+|||||++||.....+ ...+| .+++...... .... +..+.|||||++|+..+.
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g-----~v~iwd~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~--- 75 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSG-----RVEIWNYETQVEVRSIQVTETP----------VRAGKFIARKNWIIVGSD--- 75 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSC----------EEEEEEEGGGTEEEEEET---
T ss_pred CceEEEEECCCCCEEEEEeCCC-----EEEEEECCCCceEEEEecCCCc----------EEEEEEeCCCCEEEEEeC---
Confidence 6789999999999999886543 34555 4444443333 2222 379999999999988643
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCc
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
...|.+||+++++..... ......+..+.|+|||+.
T Consensus 76 -----------------------------------------dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~-- 111 (814)
T 3mkq_A 76 -----------------------------------------DFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPY-- 111 (814)
T ss_dssp -----------------------------------------TSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSE--
T ss_pred -----------------------------------------CCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCE--
Confidence 267999999888764431 233446788999999997
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC--CceecCCCCccccceeEcC-CCCeEE
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSP-DGKFLV 276 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lt~~~~~~~~~~~sp-dg~~l~ 276 (715)
|+... .+..|.++|+ .++ ....+......+....|+| ||+.|+
T Consensus 112 --l~~~~---------------~dg~i~vw~~-----------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 112 --VLSGS---------------DDLTVKLWNW-----------------ENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp --EEEEE---------------TTSEEEEEEG-----------------GGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred --EEEEc---------------CCCEEEEEEC-----------------CCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence 77654 2236777786 333 3345556667788999999 788777
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCcccc--CCCEEEEEeeeC
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS--DGCTMLLSSIWG 354 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--dg~~l~~~~~~~ 354 (715)
..+.+. .|.++|+.++........ .....+..+.|+| ++..++. ...+
T Consensus 158 ~~~~dg-----------~v~vwd~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~l~~-~~~d 207 (814)
T 3mkq_A 158 SGCLDR-----------TVKVWSLGQSTPNFTLTT------------------GQERGVNYVDYYPLPDKPYMIT-ASDD 207 (814)
T ss_dssp EEETTS-----------EEEEEETTCSSCSEEEEC------------------CCTTCCCEEEECCSTTCCEEEE-ECTT
T ss_pred EEeCCC-----------eEEEEECCCCcceeEEec------------------CCCCCEEEEEEEECCCCCEEEE-EeCC
Confidence 666542 488888876543211100 0011345667888 8875544 4434
Q ss_pred CeeEEEEEECCCCcEEEecC-CCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 355 SSQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 355 ~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
+ .+..+|+.+++...... ....+....|++++..++....+ ..|.+.++.+
T Consensus 208 g--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~v~vwd~~~ 259 (814)
T 3mkq_A 208 L--TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED----GTLKIWNSST 259 (814)
T ss_dssp S--EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETT----SCEEEEETTT
T ss_pred C--EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEECCC
Confidence 3 67777888877655433 33445556788888766554422 2355555543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-09 Score=115.97 Aligned_cols=236 Identities=8% Similarity=0.039 Sum_probs=135.0
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
......+||||++||.....+ ...+| .+++..... ....+ .+..+.|+|||+.|+..+.
T Consensus 99 ~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~---~~h~~------~v~~~~~~~~~~~l~s~s~----- 159 (420)
T 3vl1_A 99 YTAVDTAKLQMRRFILGTTEG-----DIKVLDSNFNLQREID---QAHVS------EITKLKFFPSGEALISSSQ----- 159 (420)
T ss_dssp EEEEEEECSSSCEEEEEETTS-----CEEEECTTSCEEEEET---TSSSS------CEEEEEECTTSSEEEEEET-----
T ss_pred ceEEEEEecCCCEEEEEECCC-----CEEEEeCCCcceeeec---ccccC------ccEEEEECCCCCEEEEEeC-----
Confidence 345567899999999876543 34556 333332221 11111 2379999999998876532
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE-eecCCCCCCccceEEEecCCCCCcc
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
...|.+||+.+++.. .+ ......+..++|+|||+.
T Consensus 160 ---------------------------------------d~~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~--- 195 (420)
T 3vl1_A 160 ---------------------------------------DMQLKIWSVKDGSNPRTL--IGHRATVTDIAIIDRGRN--- 195 (420)
T ss_dssp ---------------------------------------TSEEEEEETTTCCCCEEE--ECCSSCEEEEEEETTTTE---
T ss_pred ---------------------------------------CCeEEEEeCCCCcCceEE--cCCCCcEEEEEEcCCCCE---
Confidence 267999999887643 34 233446788999999997
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCC---------------------
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE--------------------- 258 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~--------------------- 258 (715)
|+..+ .+..|.++|+ .+++. ..+..
T Consensus 196 -l~s~~---------------~d~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 242 (420)
T 3vl1_A 196 -VLSAS---------------LDGTIRLWEC-----------------GTGTTIHTFNRKENPHDGVNSIALFVGTDRQL 242 (420)
T ss_dssp -EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECBTTBTTCCEEEEEEEECCCSSC
T ss_pred -EEEEc---------------CCCcEEEeEC-----------------CCCceeEEeecCCCCCCCccEEEEecCCccee
Confidence 76544 1224556665 22222 11211
Q ss_pred ---CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCC
Q 005093 259 ---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSI 335 (715)
Q Consensus 259 ---~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~ 335 (715)
.......+.|||||+.|+..+.+. .|.++|+.+++...... . .+...+
T Consensus 243 ~~~~~~~v~~~~~s~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~----------~--------~~~~~v 293 (420)
T 3vl1_A 243 HEISTSKKNNLEFGTYGKYVIAGHVSG-----------VITVHNVFSKEQTIQLP----------S--------KFTCSC 293 (420)
T ss_dssp GGGCCCCCCTTCSSCTTEEEEEEETTS-----------CEEEEETTTCCEEEEEC----------C--------TTSSCE
T ss_pred eecccCcccceEEcCCCCEEEEEcCCC-----------eEEEEECCCCceeEEcc----------c--------ccCCCc
Confidence 123466788999999887766542 38888987654311100 0 011234
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCc--EEEecC-CCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 336 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE--LLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 336 ~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~--~~~l~~-~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
..+.|+|+++.++++...++ .|..+|+.+++ ...+.. ....+. ..++++++ ++++. +.+ ..|.+.++..
T Consensus 294 ~~~~~~~~~~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~-~l~s~-~~d--~~v~iw~~~~ 365 (420)
T 3vl1_A 294 NSLTVDGNNANYIYAGYENG--MLAQWDLRSPECPVGEFLINEGTPIN-NVYFAAGA-LFVSS-GFD--TSIKLDIISD 365 (420)
T ss_dssp EEEEECSSCTTEEEEEETTS--EEEEEETTCTTSCSEEEEESTTSCEE-EEEEETTE-EEEEE-TTT--EEEEEEEECC
T ss_pred eeEEEeCCCCCEEEEEeCCC--eEEEEEcCCCcCchhhhhccCCCCce-EEEeCCCC-EEEEe-cCC--ccEEEEeccC
Confidence 56789999985555555554 56667887764 344443 222222 23445554 44333 222 2355555543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-09 Score=112.34 Aligned_cols=234 Identities=12% Similarity=0.032 Sum_probs=136.8
Q ss_pred cccccceEEeeCC-CCceEEEEecCCCCCCeEEEEecCC------ccE-EEEecCccccccccCCCcccceeecCCCCeE
Q 005093 40 VEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQS------QLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLI 111 (715)
Q Consensus 40 ~~~~~~~~~~~Sp-dg~~la~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~l 111 (715)
.+.+.+...+||| +++.||..... +.-.+|.+..++ +.. .+...... +..+.|+|+|+.+
T Consensus 79 ~h~~~V~~~~~~p~~~~~l~s~s~d--g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~p~~~~~ 146 (402)
T 2aq5_A 79 GHTAPVLDIAWCPHNDNVIASGSED--CTVMVWEIPDGGLVLPLREPVITLEGHTKR----------VGIVAWHPTAQNV 146 (402)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETT--SEEEEEECCTTCCSSCBCSCSEEEECCSSC----------EEEEEECSSBTTE
T ss_pred cCCCCEEEEEeCCCCCCEEEEEeCC--CeEEEEEccCCCCccccCCceEEecCCCCe----------EEEEEECcCCCCE
Confidence 3447799999999 88888776544 222233332221 122 22212222 3789999999655
Q ss_pred EEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC-CCCCCccceEE
Q 005093 112 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVV 190 (715)
Q Consensus 112 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~~~ 190 (715)
++.+.. ...|.+||+.+++...... ......+..+.
T Consensus 147 l~s~~~-------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 183 (402)
T 2aq5_A 147 LLSAGC-------------------------------------------DNVILVWDVGTGAAVLTLGPDVHPDTIYSVD 183 (402)
T ss_dssp EEEEET-------------------------------------------TSCEEEEETTTTEEEEEECTTTCCSCEEEEE
T ss_pred EEEEcC-------------------------------------------CCEEEEEECCCCCccEEEecCCCCCceEEEE
Confidence 555432 2569999999887654310 12334677899
Q ss_pred EecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eec-CCCCcc-cccee
Q 005093 191 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL-TESISS-AFFPR 267 (715)
Q Consensus 191 ~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l-t~~~~~-~~~~~ 267 (715)
|+|||+. |+... .+..|.++|+ .+++. ..+ ...... .....
T Consensus 184 ~~~~~~~----l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 184 WSRDGAL----ICTSC---------------RDKRVRVIEP-----------------RKGTVVAEKDRPHEGTRPVHAV 227 (402)
T ss_dssp ECTTSSC----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECSSCSSSCCEEE
T ss_pred ECCCCCE----EEEEe---------------cCCcEEEEeC-----------------CCCceeeeeccCCCCCcceEEE
Confidence 9999998 77765 2346888887 44443 333 333333 67899
Q ss_pred EcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEE
Q 005093 268 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 347 (715)
Q Consensus 268 ~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l 347 (715)
|+|||+.|+...... ....|.++|+.+.+....... .. ....+..+.|+||++.+
T Consensus 228 ~~~~~~~l~~g~~~~--------~d~~i~iwd~~~~~~~~~~~~---------~~--------~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 228 FVSEGKILTTGFSRM--------SERQVALWDTKHLEEPLSLQE---------LD--------TSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp ECSTTEEEEEEECTT--------CCEEEEEEETTBCSSCSEEEE---------CC--------CCSSCEEEEEETTTTEE
T ss_pred EcCCCcEEEEeccCC--------CCceEEEEcCccccCCceEEe---------cc--------CCCceeEEEEcCCCCEE
Confidence 999998776553221 124688999876543110000 00 01134566899999987
Q ss_pred EEEeeeCCeeEEEEEECCCCc--EEEecCC--CCCceeEEEeecCCEE
Q 005093 348 LLSSIWGSSQVIISVNVSSGE--LLRITPA--ESNFSWSLLTLDGDNI 391 (715)
Q Consensus 348 ~~~~~~~~~~~l~~~d~~tg~--~~~l~~~--~~~~~~~~~s~~~~~l 391 (715)
+++...++...+ +|+.+++ ...+... ...+....|++++..+
T Consensus 283 ~~~g~~dg~i~i--~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 283 YLCGKGDSSIRY--FEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLE 328 (402)
T ss_dssp EEEETTCSCEEE--EEECSSTTCEEEEEEECCSSCCSEEEECCGGGSC
T ss_pred EEEEcCCCeEEE--EEecCCCcceEeecccccCCcccceEEecccccc
Confidence 776655554445 4555665 4444322 2334445777776544
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-10 Score=113.79 Aligned_cols=105 Identities=15% Similarity=0.079 Sum_probs=69.1
Q ss_pred EEEEEcCCCCCCCC-ccchHHHHHHHhC--CcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 483 LIVVLHGGPHSVSL-SSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 483 ~vv~iHGg~~~~~~-~~~~~~~~~la~~--G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
.||++||.+..... ..|......|++. |+.|+++|+ | +|.+..... .+.....+++.++++.+...... .
T Consensus 7 pvVllHG~~~~~~~~~~~~~~~~~L~~~~~g~~v~~~d~-G---~g~s~~~~~--~~~~~~~~~~~~~~~~l~~~~~l-~ 79 (279)
T 1ei9_A 7 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEI-G---KTLREDVEN--SFFLNVNSQVTTVCQILAKDPKL-Q 79 (279)
T ss_dssp CEEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCC-S---SSHHHHHHH--HHHSCHHHHHHHHHHHHHSCGGG-T
T ss_pred cEEEECCCCCCCCCcccHHHHHHHHHHHCCCcEEEEEEe-C---CCCcccccc--ccccCHHHHHHHHHHHHHhhhhc-c
Confidence 38999996544312 4678888888765 889999997 7 554321000 00011123333444444432111 2
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCCc-eeEEEecCCc
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPL 594 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~~-~~~~v~~~~~ 594 (715)
+++.++||||||.++..++.++|+. ++.+|++++.
T Consensus 80 ~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~p 115 (279)
T 1ei9_A 80 QGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQ 115 (279)
T ss_dssp TCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESCC
T ss_pred CCEEEEEECHHHHHHHHHHHHcCCcccceEEEecCc
Confidence 6899999999999999999999984 9999987754
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-09 Score=114.01 Aligned_cols=288 Identities=15% Similarity=0.125 Sum_probs=160.6
Q ss_pred ccceEEeeCCCCc-eEEEEecCCCCCCeEEEEe---cCCc------cEEEEecCcccccccc-CCCcccceeecCCCCeE
Q 005093 43 TGASAVVPSPSGS-KLLVVRNPENESPIQFELW---SQSQ------LEKEFHVPQTVHGSVY-ADGWFEGISWNSDETLI 111 (715)
Q Consensus 43 ~~~~~~~~Spdg~-~la~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~wSpDg~~l 111 (715)
+.+...+|||||+ .||..... +.-.+|.+. .+++ .......+...+.... ..+.+..+.|||||+.|
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKN--SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETB--TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred CceEEEEECCCCCcEEEEecCC--ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 5688999999999 88876543 444555552 2223 1222222111100000 01134799999999999
Q ss_pred EEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCccc-CCccCceEEEEEccCCceEeecCCCCCCc-----
Q 005093 112 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLS----- 185 (715)
Q Consensus 112 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~l~~~~~~~~----- 185 (715)
+......... .|. ..................+.|.++ +..+ .......|.+||+.+++..... ......
T Consensus 124 ~~~~~dg~i~--i~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~ 198 (425)
T 1r5m_A 124 VTGVENGELR--LWN-KTGALLNVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSIN 198 (425)
T ss_dssp EEEETTSCEE--EEE-TTSCEEEEECCCCSCEEEEEECTT-SSEEEEEETTCCEEEEETTTTEEEEEE-CCC--------
T ss_pred EEEeCCCeEE--EEe-CCCCeeeeccCCCccEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEe-eccccCcccee
Confidence 8876543221 222 101111111112223334556665 3333 3333578999999888765431 111112
Q ss_pred ----------cceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-Cce
Q 005093 186 ----------VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVV 254 (715)
Q Consensus 186 ----------~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 254 (715)
+..+.|+|++. ++... ....|+++|+ .++ ...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------------~~g~i~~~d~-----------------~~~~~~~ 241 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDDK-----FVIPG---------------PKGAIFVYQI-----------------TEKTPTG 241 (425)
T ss_dssp -------CCCBSCCEEEETTE-----EEEEC---------------GGGCEEEEET-----------------TCSSCSE
T ss_pred eccccCCcceeeEEEEcCCCE-----EEEEc---------------CCCeEEEEEc-----------------CCCceee
Confidence 67788999854 44433 2246888887 433 344
Q ss_pred ecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCC
Q 005093 255 NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 334 (715)
Q Consensus 255 ~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~ 334 (715)
.+......+....|+|||+.|+..+.+. .|+++|+.+++....... +...
T Consensus 242 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~~-------------------~~~~ 291 (425)
T 1r5m_A 242 KLIGHHGPISVLEFNDTNKLLLSASDDG-----------TLRIWHGGNGNSQNCFYG-------------------HSQS 291 (425)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEETTS-----------CEEEECSSSBSCSEEECC-------------------CSSC
T ss_pred eeccCCCceEEEEECCCCCEEEEEcCCC-----------EEEEEECCCCccceEecC-------------------CCcc
Confidence 5555666788899999999887766542 488888876543211100 0113
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-CCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 335 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+..+.|+|++ ++++...++ .|..+|+.+++....... ...+....++++++.|+....+ ..|.+.++.+.
T Consensus 292 i~~~~~~~~~--~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~~~~~~ 362 (425)
T 1r5m_A 292 IVSASWVGDD--KVISCSMDG--SVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD----GQVNVYDLKKL 362 (425)
T ss_dssp EEEEEEETTT--EEEEEETTS--EEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT----SCEEEEECHHH
T ss_pred EEEEEECCCC--EEEEEeCCC--cEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC----CeEEEEECCCC
Confidence 4567799998 444444444 677778888876655443 3345556788888776654422 34777776544
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.9e-10 Score=117.24 Aligned_cols=295 Identities=15% Similarity=0.153 Sum_probs=156.7
Q ss_pred ccceEEeeCCCCceEEEEecCCC------CCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEE
Q 005093 43 TGASAVVPSPSGSKLLVVRNPEN------ESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 114 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~ 114 (715)
..+...+|||||+.++++....+ .......+| ..+...+.... .... ..+..+.|||||+.|+..
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~------~~v~~~~~s~~~~~l~~~ 85 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVD------SKFNDLDWSHNNKIIAGA 85 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCS------SCEEEEEECSSSSCEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecC------CceEEEEECCCCCeEEEE
Confidence 34677899999985655652211 111223334 22221111100 0111 123799999999999887
Q ss_pred eecCCCCCCCccCCCCC----CCCCCcCCCCCCCCCcccCCcCcccC-CccCceEEEEEccCCc------eEe-ec-CCC
Q 005093 115 AEEPSPSKPTFSLGSTK----GGSSDKDCNSWKGQGDWEEDWGETYA-GKRQPSLFVININSGE------VQA-VK-GIP 181 (715)
Q Consensus 115 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~------~~~-l~-~~~ 181 (715)
..+.... .|...... ..............+.|.++.+..+. ......|.+||+.+++ ... +. ...
T Consensus 86 ~~dg~v~--vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 163 (416)
T 2pm9_A 86 LDNGSLE--LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163 (416)
T ss_dssp ESSSCEE--EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred ccCCeEE--EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence 6554322 22222210 11111123334445667766333332 2234789999998876 221 10 012
Q ss_pred CCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCC-
Q 005093 182 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES- 259 (715)
Q Consensus 182 ~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~- 259 (715)
....+..+.|+|++.. +++++. .+..|.++|+ .+++. ..+...
T Consensus 164 ~~~~v~~~~~~~~~~~----~l~~~~--------------~dg~v~iwd~-----------------~~~~~~~~~~~~~ 208 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAH----VFASAG--------------SSNFASIWDL-----------------KAKKEVIHLSYTS 208 (416)
T ss_dssp SSCCCCEEEECSSCTT----EEEEES--------------SSSCEEEEET-----------------TTTEEEEEECCCC
T ss_pred CCCCeeEEEeCCCCCc----EEEEEc--------------CCCCEEEEEC-----------------CCCCcceEEeccc
Confidence 2345778999999766 666653 2236888887 44433 333333
Q ss_pred -----CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC-CCcccceeeeeeceecCCCCCccccccC
Q 005093 260 -----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSS 333 (715)
Q Consensus 260 -----~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~~~~g~~~~ 333 (715)
...+....|+|+|+.++++...+ .....|+++|+.++.. ....... +..
T Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------~~~~~i~~~d~~~~~~~~~~~~~~------------------~~~ 263 (416)
T 2pm9_A 209 PNSGIKQQLSVVEWHPKNSTRVATATGS-------DNDPSILIWDLRNANTPLQTLNQG------------------HQK 263 (416)
T ss_dssp CSSCCCCCEEEEEECSSCTTEEEEEECC-------SSSCCCCEEETTSTTSCSBCCCSC------------------CSS
T ss_pred cccccCCceEEEEECCCCCCEEEEEECC-------CCCceEEEEeCCCCCCCcEEeecC------------------ccC
Confidence 45688899999986554444432 1112588889877532 1111000 111
Q ss_pred CCCCCcccc-CCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 334 SILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 334 ~~~~~~~~~-dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
.+..+.|+| +++ ++++...++ .|..+|+.+++.... ......+....|++++..++++.+. -..|.+.++.+
T Consensus 264 ~v~~~~~s~~~~~-~l~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~~ 337 (416)
T 2pm9_A 264 GILSLDWCHQDEH-LLLSSGRDN--TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF---DNKIEVQTLQN 337 (416)
T ss_dssp CEEEEEECSSCSS-CEEEEESSS--EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS---SSEEEEEESCC
T ss_pred ceeEEEeCCCCCC-eEEEEeCCC--CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec---CCcEEEEEccC
Confidence 345678999 776 445555444 566678887776544 3333344556888888444444432 23466666654
Q ss_pred c
Q 005093 412 K 412 (715)
Q Consensus 412 ~ 412 (715)
.
T Consensus 338 ~ 338 (416)
T 2pm9_A 338 L 338 (416)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-11 Score=128.28 Aligned_cols=112 Identities=12% Similarity=0.036 Sum_probs=81.0
Q ss_pred CCCcEEEEEcCCCCCCCCccchH-HHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~-~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
...|+||++||.+... ...|.. .+..|++ .||.|+++|+|| +|.+.......+ ......|+.++++++.++..
T Consensus 68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g---~g~s~~~~~~~~-~~~~~~dl~~~i~~l~~~~g 142 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKG---GSKAQYSQASQN-IRVVGAEVAYLVQVLSTSLN 142 (432)
T ss_dssp TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHH---HHTSCHHHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECcc---ccCccchhhHhh-HHHHHHHHHHHHHHHHHhcC
Confidence 4578999999966542 235655 6677766 899999999998 333211100000 01124678888888876544
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
++.+++.|+|||+||.+++.++.++|++++++++++|..
T Consensus 143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~ 181 (432)
T 1gpl_A 143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAE 181 (432)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecccc
Confidence 567899999999999999999999999999999888754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-08 Score=105.73 Aligned_cols=276 Identities=12% Similarity=0.108 Sum_probs=153.6
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
+.+.+...+|||||++|+-.+..+ ...+| .+++......... .++..++|+|||+.|+..+.+.
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~h~---------~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDG-----RLIVWNALTSQKTHAIKLHC---------PWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTS-----EEEEEETTTTEEEEEEECCC---------TTCCCCEECTTSSEEEECCSSS
T ss_pred cccEEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCccceEEecCC---------CCEEEEEECCCCCEEEEeeCCC
Confidence 446789999999999998765543 45667 3444333332211 1237899999999998765544
Q ss_pred CCCCCCccCCCCC-------CCCCCcCCCCCCCCCcccCCcCccc-CCccCceEEEEEccCCceEeecC----CCCCCcc
Q 005093 119 SPSKPTFSLGSTK-------GGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVKG----IPKSLSV 186 (715)
Q Consensus 119 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~l~~----~~~~~~~ 186 (715)
... .|...... ................|.++.+..+ .......|.+||+.+++...... ......+
T Consensus 131 ~v~--iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 131 ACS--IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp CCE--EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred cEE--EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 322 22211100 0001111222333445555422222 22345789999999987654311 1112345
Q ss_pred ceEEEec-CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccc
Q 005093 187 GQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFF 265 (715)
Q Consensus 187 ~~~~~sp-dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~ 265 (715)
..+.|+| ++. ++.++. .+..|.++|+. ........+..+...+..
T Consensus 209 ~~~~~~~~~~~-----~l~sgs--------------~D~~v~~wd~~---------------~~~~~~~~~~~h~~~v~~ 254 (380)
T 3iz6_a 209 LSLSINSLNAN-----MFISGS--------------CDTTVRLWDLR---------------ITSRAVRTYHGHEGDINS 254 (380)
T ss_dssp EEEEECSSSCC-----EEEEEE--------------TTSCEEEEETT---------------TTCCCCEEECCCSSCCCE
T ss_pred EEEEeecCCCC-----EEEEEE--------------CCCeEEEEECC---------------CCCcceEEECCcCCCeEE
Confidence 6778877 555 454442 22357777861 012344556667778899
Q ss_pred eeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCC
Q 005093 266 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 345 (715)
Q Consensus 266 ~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~ 345 (715)
..|+|||+.|+-.+.+. .|.++|+.++......... ....+... ..+..++|+|+|+
T Consensus 255 v~~~p~~~~l~s~s~D~-----------~i~lwd~~~~~~~~~~~~~-------~~~~~~~~-----~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 255 VKFFPDGQRFGTGSDDG-----------TCRLFDMRTGHQLQVYNRE-------PDRNDNEL-----PIVTSVAFSISGR 311 (380)
T ss_dssp EEECTTSSEEEEECSSS-----------CEEEEETTTTEEEEEECCC-------CSSSCCSS-----CSCSEEEECSSSS
T ss_pred EEEecCCCeEEEEcCCC-----------eEEEEECCCCcEEEEeccc-------cccccccc-----CceEEEEECCCCC
Confidence 99999999887666553 4888888775432110000 00000000 1245678999998
Q ss_pred EEEEEeeeCCeeEEEEEECCCCcEEEec-----CCCCCceeEEEeecCCEEE
Q 005093 346 TMLLSSIWGSSQVIISVNVSSGELLRIT-----PAESNFSWSLLTLDGDNII 392 (715)
Q Consensus 346 ~l~~~~~~~~~~~l~~~d~~tg~~~~l~-----~~~~~~~~~~~s~~~~~l~ 392 (715)
.++. ...++ .++.+|+.+++..... .....+....|++++..|+
T Consensus 312 ~l~~-g~~dg--~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 312 LLFA-GYSNG--DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC 360 (380)
T ss_dssp EEEE-ECTTS--CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEE
T ss_pred EEEE-EECCC--CEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEE
Confidence 5544 44344 5666788777755432 1222345567888887654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-08 Score=110.41 Aligned_cols=266 Identities=9% Similarity=0.022 Sum_probs=151.3
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEec---CCccEEEEecCccccccccCCCcccceeecC----CCCeEEEEeec
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNS----DETLIAYVAEE 117 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSp----Dg~~la~~~~~ 117 (715)
+...++||||++|+..... + .+..++. +++....+...... ..+.||| ||++|+.....
T Consensus 181 ~~~v~~spdg~~l~v~~~d--~--~V~v~D~~~~t~~~~~~i~~g~~p----------~~va~sp~~~~dg~~l~v~~~~ 246 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRD--A--RIDMIDLWAKEPTKVAEIKIGIEA----------RSVESSKFKGYEDRYTIAGAYW 246 (543)
T ss_dssp EEEEEECTTSCEEEEEETT--S--EEEEEETTSSSCEEEEEEECCSEE----------EEEEECCSTTCTTTEEEEEEEE
T ss_pred cceEEECCCCCEEEEECCC--C--eEEEEECcCCCCcEEEEEecCCCc----------ceEEeCCCcCCCCCEEEEEEcc
Confidence 5677899999998766543 2 3443333 33333333322222 6899999 99988775432
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCC----------CCccc
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK----------SLSVG 187 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~----------~~~~~ 187 (715)
..+|.+||.++++........+ +..+.
T Consensus 247 -------------------------------------------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 247 -------------------------------------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp -------------------------------------------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred -------------------------------------------CCeEEEEeccccccceeecccCcccCccccccCCceE
Confidence 2668899998887654311110 11345
Q ss_pred eEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-e--ecCCCCcccc
Q 005093 188 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-V--NLTESISSAF 264 (715)
Q Consensus 188 ~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~lt~~~~~~~ 264 (715)
.+.+|||++. ++++.. ....|+++|+ .+... . .+. ......
T Consensus 284 ~i~~s~~~~~----~~vs~~--------------~~g~i~vvd~-----------------~~~~~l~~~~i~-~~~~~~ 327 (543)
T 1nir_A 284 AIIASHEHPE----FIVNVK--------------ETGKVLLVNY-----------------KDIDNLTVTSIG-AAPFLH 327 (543)
T ss_dssp EEEECSSSSE----EEEEET--------------TTTEEEEEEC-----------------TTSSSCEEEEEE-CCSSCC
T ss_pred EEEECCCCCE----EEEEEC--------------CCCeEEEEEe-----------------cCCCcceeEEec-cCcCcc
Confidence 7889999997 766542 2347999997 33322 1 221 233467
Q ss_pred ceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cc------------------------cc-eeeeeec
Q 005093 265 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SL------------------------EK-IVDVIPV 318 (715)
Q Consensus 265 ~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt------------------------~~-~~~~~~~ 318 (715)
...|||||++|+...+.+ ..|.++|+.+++... +. .. .+..+.+
T Consensus 328 ~~~~spdg~~l~va~~~~----------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v 397 (543)
T 1nir_A 328 DGGWDSSHRYFMTAANNS----------NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISL 397 (543)
T ss_dssp CEEECTTSCEEEEEEGGG----------TEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred CceECCCCCEEEEEecCC----------CeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEE
Confidence 789999999886555432 236666665543211 00 00 0112223
Q ss_pred eecCCCCC----cc--c-c--ccCCCCCCccccCCCEEEEEeeeC----CeeEEEEEECCCCcEE-Eec---------CC
Q 005093 319 VQCAEGDC----FP--G-L--YSSSILSNPWLSDGCTMLLSSIWG----SSQVIISVNVSSGELL-RIT---------PA 375 (715)
Q Consensus 319 ~~~~~~~~----~~--g-~--~~~~~~~~~~~~dg~~l~~~~~~~----~~~~l~~~d~~tg~~~-~l~---------~~ 375 (715)
+....... .. + + ...+...+.++|||+.|+.....+ ....|..+|+++++.. .+. ..
T Consensus 398 ~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~ 477 (543)
T 1nir_A 398 IGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 477 (543)
T ss_dssp EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred EEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence 33222100 00 0 0 111234567899999887654211 1457888999887754 331 22
Q ss_pred CCCceeEEEeecCCEEEEEEeCC-CCCCeEEEEeecccC
Q 005093 376 ESNFSWSLLTLDGDNIIAVSSSP-VDVPQVKYGYFVDKA 413 (715)
Q Consensus 376 ~~~~~~~~~s~~~~~l~~~~~~~-~~p~~l~~~~~~~~~ 413 (715)
........|+++|+.++++.-+. .....|.++|..+.+
T Consensus 478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 22233457899999999876433 456778888866543
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=125.86 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=92.6
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc-chHHHHHHHhCC-cEEEEEcCCCC-CCCchhhhhc--CC
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVG-YSLLIVNYRGS-LGFGEEALQS--LP 533 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~-~~~~~~~la~~G-~~vi~~d~rG~-~~~g~~~~~~--~~ 533 (715)
+.|++.+ .+|.|.. ..++.|+||++|||++..+... .......|+++| ++|+.+|||.. .||+...... ..
T Consensus 81 ~edcl~l--~v~~P~~--~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~~~~ 156 (498)
T 2ogt_A 81 SEDGLYL--NIWSPAA--DGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFGEAY 156 (498)
T ss_dssp BSCCCEE--EEEESCS--SSCCEEEEEEECCSTTTSCCTTCGGGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTTTCGGG
T ss_pred CCCCcEE--EEEecCC--CCCCCcEEEEEcCCccCCCCCCCCcCCHHHHHhCCCEEEEeCCCcCchhhccCchhhccccc
Confidence 3456555 4778862 4567899999999986554332 122345677766 99999999931 1243221100 01
Q ss_pred CCCCccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecCCcch
Q 005093 534 GKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 596 (715)
Q Consensus 534 ~~~~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~~ 596 (715)
...+...+.|+.++++|+.++. ..|+++|.|+|+|+||.+++.++... +.+|+++|+.+|...
T Consensus 157 ~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~ 224 (498)
T 2ogt_A 157 AQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS 224 (498)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence 1223344889999999998862 36899999999999999998887753 458999999998654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-09 Score=113.11 Aligned_cols=256 Identities=11% Similarity=-0.001 Sum_probs=150.3
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
...++|||||++|+.....+ . ..+| ..++....... + .......|+|||++|+..+.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~----~-v~i~d~~~~~~~~~~~~----~------~~~~~~~~~~~~~~l~~~~~------ 117 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDG----H-DFLFNTIIRDGSKMLKR----A------DYTAVDTAKLQMRRFILGTT------ 117 (420)
T ss_dssp CTTCEEEEEETTEEEEEETT----E-EEEEECCSEETTTTSCS----C------CEEEEEEECSSSCEEEEEET------
T ss_pred ccceeeeecCCeEEEEEcCC----c-EEEEEecccceeeEEec----C------CceEEEEEecCCCEEEEEEC------
Confidence 34679999999999876653 2 3344 22222111111 1 11245579999999888632
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 202 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i 202 (715)
...|.+||+++++..... ......+..++|+|||+. |
T Consensus 118 --------------------------------------dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~----l 154 (420)
T 3vl1_A 118 --------------------------------------EGDIKVLDSNFNLQREID-QAHVSEITKLKFFPSGEA----L 154 (420)
T ss_dssp --------------------------------------TSCEEEECTTSCEEEEET-TSSSSCEEEEEECTTSSE----E
T ss_pred --------------------------------------CCCEEEEeCCCcceeeec-ccccCccEEEEECCCCCE----E
Confidence 256899999988877662 233446788999999996 6
Q ss_pred EEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 203 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 203 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
+..+ .+..|.++|+. .+.....+..+...+..+.|+|||+.|+..+.+.
T Consensus 155 ~s~s---------------~d~~i~iwd~~----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 203 (420)
T 3vl1_A 155 ISSS---------------QDMQLKIWSVK----------------DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG 203 (420)
T ss_dssp EEEE---------------TTSEEEEEETT----------------TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred EEEe---------------CCCeEEEEeCC----------------CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 6554 23468888871 3445556666777889999999999998666553
Q ss_pred CCCCCCccccceeEeeecCCCCCCCc-cc---ceeeeeeceecCC-CCCccccccCCCCCCccccCCCEEEEEeeeCCee
Q 005093 283 SVDSGAHSATDSLHRIDWPTNGNFSS-LE---KIVDVIPVVQCAE-GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 357 (715)
Q Consensus 283 ~~~~g~~~~~~~l~~~~~~~~~~~~l-t~---~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 357 (715)
.|.++|+.+++.... .. ....+..+..... ...........+..+.|+|+|+.++ +...++
T Consensus 204 -----------~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg-- 269 (420)
T 3vl1_A 204 -----------TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI-AGHVSG-- 269 (420)
T ss_dssp -----------CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE-EEETTS--
T ss_pred -----------cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE-EEcCCC--
Confidence 377888876543211 10 0001111100000 0000001123456788999998554 444444
Q ss_pred EEEEEECCCCcEEEecCC--CCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 358 VIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 358 ~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
.|..+|+.+++....... ...+....|++++..++++.+.- ..|.+.++.++
T Consensus 270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~ 323 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN---GMLAQWDLRSP 323 (420)
T ss_dssp CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT---SEEEEEETTCT
T ss_pred eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC---CeEEEEEcCCC
Confidence 466678887775544332 22344567888887344444322 35777776544
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.3e-09 Score=111.26 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=88.7
Q ss_pred ceEEEEEcc--CCceEee-cCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh
Q 005093 162 PSLFVININ--SGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 238 (715)
Q Consensus 162 ~~l~~~~~~--~g~~~~l-~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 238 (715)
..|.+||+. +++.... ........+..++|+|||+. |+... ....|+.+++
T Consensus 125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~----l~~~~---------------~~g~v~~~~~------- 178 (450)
T 2vdu_B 125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT----VIIAD---------------KFGDVYSIDI------- 178 (450)
T ss_dssp TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE----EEEEE---------------TTSEEEEEET-------
T ss_pred CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE----EEEEe---------------CCCcEEEEec-------
Confidence 568999988 6654433 10122345678999999997 76654 2346888887
Q ss_pred hhhhhhccCCCCCCce-----ecCCCCccccceeEcCC---CCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCc-c
Q 005093 239 SELELKESSSEDLPVV-----NLTESISSAFFPRFSPD---GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-L 309 (715)
Q Consensus 239 ~~~~~~~~~~~~~~~~-----~lt~~~~~~~~~~~spd---g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~l-t 309 (715)
.++... .+......+..+.|+|| |+.|+..+.+. .|+++|+.++..... .
T Consensus 179 ----------~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~-----------~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 179 ----------NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE-----------HIKISHYPQCFIVDKWL 237 (450)
T ss_dssp ----------TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS-----------CEEEEEESCTTCEEEEC
T ss_pred ----------CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC-----------cEEEEECCCCceeeeee
Confidence 333322 44445567888999999 88887666542 488888876543211 0
Q ss_pred cceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 310 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
.+ +...+..++|+ |++.|+ +...+ ..|..+|+.+++.....
T Consensus 238 ~~-------------------h~~~v~~~~~s-d~~~l~-s~~~d--~~v~vwd~~~~~~~~~~ 278 (450)
T 2vdu_B 238 FG-------------------HKHFVSSICCG-KDYLLL-SAGGD--DKIFAWDWKTGKNLSTF 278 (450)
T ss_dssp CC-------------------CSSCEEEEEEC-STTEEE-EEESS--SEEEEEETTTCCEEEEE
T ss_pred cC-------------------CCCceEEEEEC-CCCEEE-EEeCC--CeEEEEECCCCcEeeee
Confidence 00 11134567799 988555 44433 36777798888855443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-09 Score=110.91 Aligned_cols=270 Identities=12% Similarity=0.073 Sum_probs=151.5
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
+.+.+...+|||||++||-....+ ...+| ..++......... .++..++|||||+.|+....+.
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~~~---------~~v~~~~~sp~g~~lasg~~d~ 128 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDG-----KVIVWDSFTTNKEHAVTMPC---------TWVMACAYAPSGCAIACGGLDN 128 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCEEEEEECSS---------SCCCEEEECTTSSEEEEESTTS
T ss_pred CCCeEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCCcceEEecCC---------CCEEEEEECCCCCEEEEeeCCC
Confidence 346789999999999988765543 45667 3333333333221 1237899999999998765433
Q ss_pred CCCCCCccCCCCCCCCC------CcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEe
Q 005093 119 SPSKPTFSLGSTKGGSS------DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 192 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~s 192 (715)
... .+.......... ............|.++....+.......|.+||+++++..... ......+..+.|+
T Consensus 129 ~i~--v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 129 KCS--VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLA 205 (354)
T ss_dssp EEE--EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEEC
T ss_pred CEE--EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEE
Confidence 211 111111100000 0011222233445555222233334578999999988764431 2223345667787
Q ss_pred cC--CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCccccceeEc
Q 005093 193 PL--NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFS 269 (715)
Q Consensus 193 pd--g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~s 269 (715)
|+ |+. |+ ++. .+..|.++|+ .+++ ...+..+...+...+|+
T Consensus 206 ~~~~g~~----l~-sgs--------------~Dg~v~~wd~-----------------~~~~~~~~~~~h~~~v~~v~~~ 249 (354)
T 2pbi_B 206 PSETGNT----FV-SGG--------------CDKKAMVWDM-----------------RSGQCVQAFETHESDVNSVRYY 249 (354)
T ss_dssp CCSSCCE----EE-EEE--------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEEC
T ss_pred eCCCCCE----EE-EEe--------------CCCeEEEEEC-----------------CCCcEEEEecCCCCCeEEEEEe
Confidence 74 554 44 442 2236888887 4444 34555566778899999
Q ss_pred CCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEE
Q 005093 270 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 349 (715)
Q Consensus 270 pdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~ 349 (715)
|+|+.|+-.+.+. .|.++|+.++....+ ... .. .......+.|+|+|+.+ +
T Consensus 250 p~~~~l~s~s~D~-----------~v~lwd~~~~~~~~~----------~~~--~~-----~~~~~~~~~~s~~g~~l-~ 300 (354)
T 2pbi_B 250 PSGDAFASGSDDA-----------TCRLYDLRADREVAI----------YSK--ES-----IIFGASSVDFSLSGRLL-F 300 (354)
T ss_dssp TTSSEEEEEETTS-----------CEEEEETTTTEEEEE----------ECC--TT-----CCSCEEEEEECTTSSEE-E
T ss_pred CCCCEEEEEeCCC-----------eEEEEECCCCcEEEE----------EcC--CC-----cccceeEEEEeCCCCEE-E
Confidence 9999888766553 377888776432111 000 00 00123456799999855 4
Q ss_pred EeeeCCeeEEEEEECCCCcEEEe-cCCCCCceeEEEeecCCEEEEE
Q 005093 350 SSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 350 ~~~~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~~~~~l~~~ 394 (715)
+...++ .+..+|+.+++.... ......+....|++++..|+..
T Consensus 301 ~g~~d~--~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 301 AGYNDY--TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp EEETTS--CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred EEECCC--cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEE
Confidence 444444 455568877765543 3333445556788888766543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-08 Score=102.42 Aligned_cols=253 Identities=14% Similarity=0.034 Sum_probs=146.1
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
.....|+|+|||+.|+++...+ ..++.+...+... ....... ....+.++|||+ |++. ..
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~---~~i~~~~~~~~~~-~~~~~~~---------~~~~l~~~~dg~-l~v~-~~----- 87 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQ---NRTWAWSDDGQLS-PEMHPSH---------HQNGHCLNKQGH-LIAC-SH----- 87 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGG---TEEEEEETTSCEE-EEESSCS---------SEEEEEECTTCC-EEEE-ET-----
T ss_pred ccccCCeEeCCCCEEEEEeCCC---CEEEEEECCCCeE-EEECCCC---------CcceeeECCCCc-EEEE-ec-----
Confidence 3457899999999888876543 2677776333333 3322211 126899999998 3332 21
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCC---CCccceEEEecCCCCCc
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~~~~~spdg~~~~ 199 (715)
....|+++|+++|+.+.+..... ......+.++|||+
T Consensus 88 -------------------------------------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--- 127 (296)
T 3e5z_A 88 -------------------------------------GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--- 127 (296)
T ss_dssp -------------------------------------TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC---
T ss_pred -------------------------------------CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC---
Confidence 12568999998888766521111 11345789999997
Q ss_pred cEEEEEeecCccc--eeeeee-eecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEE
Q 005093 200 QYLVFVGWSSETR--KLGIKY-CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 200 ~~i~~~~~~~~~~--~~g~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~ 276 (715)
|+++....+.. ..+... .......||.++. . ++.+.+.........++|+|||+.|
T Consensus 128 --l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~-----------------~-g~~~~~~~~~~~~~gi~~s~dg~~l- 186 (296)
T 3e5z_A 128 --LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP-----------------D-GTLSAPIRDRVKPNGLAFLPSGNLL- 186 (296)
T ss_dssp --EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT-----------------T-SCEEEEECCCSSEEEEEECTTSCEE-
T ss_pred --EEEECCccccccccccccccccCCCcEEEEECC-----------------C-CCEEEeecCCCCCccEEECCCCCEE-
Confidence 66652100000 000000 0011247999985 4 6666665555566789999999988
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCe
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 356 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~ 356 (715)
++.... ..|+++++...+. +. .. ..++ ... . ..+..++++++|+ |++.. .
T Consensus 187 v~~~~~----------~~i~~~~~~~~g~--~~-~~---~~~~-~~~-~-------~~p~~i~~d~~G~-l~v~~----~ 236 (296)
T 3e5z_A 187 VSDTGD----------NATHRYCLNARGE--TE-YQ---GVHF-TVE-P-------GKTDGLRVDAGGL-IWASA----G 236 (296)
T ss_dssp EEETTT----------TEEEEEEECSSSC--EE-EE---EEEE-CCS-S-------SCCCSEEEBTTSC-EEEEE----T
T ss_pred EEeCCC----------CeEEEEEECCCCc--Cc-CC---CeEe-eCC-C-------CCCCeEEECCCCC-EEEEc----C
Confidence 665432 3588888763221 10 00 0111 000 0 1245678899997 66655 2
Q ss_pred eEEEEEECCCCcEEEecCCCCCceeEEEe-ecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 357 QVIISVNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 357 ~~l~~~d~~tg~~~~l~~~~~~~~~~~~s-~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
..|+++|+++.....+..... .....|+ ++++.|+++..+ .|+++++.++
T Consensus 237 ~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-----~l~~~~~~~~ 287 (296)
T 3e5z_A 237 DGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-----EFWSIETNVR 287 (296)
T ss_dssp TEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-----EEEEEECSCC
T ss_pred CeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-----eEEEEEcccc
Confidence 478899997555556654444 4445674 677777776542 6888887654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-09 Score=108.71 Aligned_cols=275 Identities=10% Similarity=0.007 Sum_probs=151.8
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCC---CceEEEEecCCCCCCeEEEEe--cCCc-cEEEEecCcc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPS---GSKLLVVRNPENESPIQFELW--SQSQ-LEKEFHVPQT 88 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spd---g~~la~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~ 88 (715)
...|.++++.++........ .....+...+|+|+ |+.|+.....+ ...+| ..++ .......
T Consensus 43 d~~v~iw~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~--- 109 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREI-----EKAKPIKCGTFGATSLQQRYLATGDFGG-----NLHIWNLEAPEMPVYSVKG--- 109 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEE-----EESSCEEEEECTTCCTTTCCEEEEETTS-----CEEEECTTSCSSCSEEECC---
T ss_pred CcEEEEEeCCCCcccceeee-----cccCcEEEEEEcCCCCCCceEEEecCCC-----eEEEEeCCCCCccEEEEEe---
Confidence 55677777876543211111 12256899999999 68887765442 23445 3333 3332221
Q ss_pred ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEE
Q 005093 89 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 168 (715)
Q Consensus 89 ~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (715)
..+.|..-.+...+.|+|||+.|+..+.+ ..|.+||
T Consensus 110 ~~~~v~~~~~~~~~~~s~~~~~l~~~~~d--------------------------------------------~~i~vwd 145 (357)
T 3i2n_A 110 HKEIINAIDGIGGLGIGEGAPEIVTGSRD--------------------------------------------GTVKVWD 145 (357)
T ss_dssp CSSCEEEEEEESGGGCC-CCCEEEEEETT--------------------------------------------SCEEEEC
T ss_pred cccceEEEeeccccccCCCccEEEEEeCC--------------------------------------------CeEEEEe
Confidence 11112100111223679999988775332 5689999
Q ss_pred ccCCc--eEeecCCCC--CCccceEE----EecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 169 INSGE--VQAVKGIPK--SLSVGQVV----WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 169 ~~~g~--~~~l~~~~~--~~~~~~~~----~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
+.+++ ...+..... ...+..+. |+|+++. ++... .+..|..+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----l~~~~---------------~d~~i~i~d~--------- 197 (357)
T 3i2n_A 146 PRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV----VCAGY---------------DNGDIKLFDL--------- 197 (357)
T ss_dssp TTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE----EEEEE---------------TTSEEEEEET---------
T ss_pred CCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCE----EEEEc---------------cCCeEEEEEC---------
Confidence 98775 333421111 12344555 7899986 66554 2247888897
Q ss_pred hhhhccCCCCCCceecCCCCccccceeEcC---CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeee
Q 005093 241 LELKESSSEDLPVVNLTESISSAFFPRFSP---DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 317 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~~~~~~~~~~~sp---dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~ 317 (715)
.+++..........+....|+| +++.|+..+.+. .|+++|+.++....... ...
T Consensus 198 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~----~~~ 254 (357)
T 3i2n_A 198 --------RNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEG-----------KFHVFDMRTQHPTKGFA----SVS 254 (357)
T ss_dssp --------TTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTT-----------EEEEEEEEEEETTTEEE----EEE
T ss_pred --------ccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCC-----------eEEEEeCcCCCccccee----eec
Confidence 6666655555666788999999 999887766542 47788876644321100 000
Q ss_pred ceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc------------------EEEecCCCCCc
Q 005093 318 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE------------------LLRITPAESNF 379 (715)
Q Consensus 318 ~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~------------------~~~l~~~~~~~ 379 (715)
. .. +...+..+.|+|+++.++++...++...+|.++..... ...+......+
T Consensus 255 -~-~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v 324 (357)
T 3i2n_A 255 -E-KA--------HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI 324 (357)
T ss_dssp -E-EC--------CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE
T ss_pred -c-CC--------CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe
Confidence 0 00 11234567899999867777777776677766532211 22233333334
Q ss_pred eeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 380 SWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 380 ~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
....|++++..++++.+.- ..|.+.++.
T Consensus 325 ~~~~~s~~~~~l~~s~~~d---~~i~iw~~~ 352 (357)
T 3i2n_A 325 SSLDWSPDKRGLCVCSSFD---QTVRVLIVT 352 (357)
T ss_dssp EEEEECSSSTTEEEEEETT---SEEEEEEEC
T ss_pred eEEEEcCCCCeEEEEecCC---CcEEEEECC
Confidence 4457788877776444322 235555543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.10 E-value=8e-09 Score=109.11 Aligned_cols=262 Identities=13% Similarity=0.099 Sum_probs=153.0
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHG 91 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 91 (715)
....|+++++.++.. .++.... +.+.+...+|||||+.|+.....+ ...+| ..++...... ...+
T Consensus 111 ~d~~v~lw~~~~~~~--~~~~~~~---~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~---~~~~ 177 (401)
T 4aez_A 111 LERNVYVWNADSGSV--SALAETD---ESTYVASVKWSHDGSFLSVGLGNG-----LVDIYDVESQTKLRTMA---GHQA 177 (401)
T ss_dssp ETTEEEEEETTTCCE--EEEEECC---TTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEEC---CCSS
T ss_pred CCCeEEEeeCCCCcE--eEeeecC---CCCCEEEEEECCCCCEEEEECCCC-----eEEEEECcCCeEEEEec---CCCC
Confidence 344566666655432 2221111 225689999999999998876543 23445 3444333332 1111
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
.+..+.| +++.|+..+. ...|.+||+..
T Consensus 178 ------~v~~~~~--~~~~l~~~~~--------------------------------------------dg~i~i~d~~~ 205 (401)
T 4aez_A 178 ------RVGCLSW--NRHVLSSGSR--------------------------------------------SGAIHHHDVRI 205 (401)
T ss_dssp ------CEEEEEE--ETTEEEEEET--------------------------------------------TSEEEEEETTS
T ss_pred ------ceEEEEE--CCCEEEEEcC--------------------------------------------CCCEEEEeccc
Confidence 2267888 4555555322 26799999984
Q ss_pred Cc--eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCC
Q 005093 172 GE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 249 (715)
Q Consensus 172 g~--~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (715)
+. ...+ ......+..+.|+|||+. |+..+ .+..|.++|+ .
T Consensus 206 ~~~~~~~~--~~~~~~v~~~~~~~~~~~----l~s~~---------------~d~~v~iwd~-----------------~ 247 (401)
T 4aez_A 206 ANHQIGTL--QGHSSEVCGLAWRSDGLQ----LASGG---------------NDNVVQIWDA-----------------R 247 (401)
T ss_dssp SSCEEEEE--ECCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET-----------------T
T ss_pred CcceeeEE--cCCCCCeeEEEEcCCCCE----EEEEe---------------CCCeEEEccC-----------------C
Confidence 33 3333 233446778999999986 66554 2236888887 4
Q ss_pred CCC-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcc
Q 005093 250 DLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 328 (715)
Q Consensus 250 ~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~ 328 (715)
++. ...+......+..+.|+|+|+.++.+.... ....|+++|+.++....... .
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs--------~d~~i~i~d~~~~~~~~~~~----------~------- 302 (401)
T 4aez_A 248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT--------MDKQIHFWNAATGARVNTVD----------A------- 302 (401)
T ss_dssp CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCT--------TTCEEEEEETTTCCEEEEEE----------C-------
T ss_pred CCCccEEecCCcceEEEEEECCCCCCEEEEecCC--------CCCEEEEEECCCCCEEEEEe----------C-------
Confidence 443 345556667789999999998887776421 12358899987754321110 0
Q ss_pred ccccCCCCCCccccCCCEEEEEee-eCCeeEEEEEECCCCcEEEe---cCCCCCceeEEEeecCCEEEEEEeCCCCCCeE
Q 005093 329 GLYSSSILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELLRI---TPAESNFSWSLLTLDGDNIIAVSSSPVDVPQV 404 (715)
Q Consensus 329 g~~~~~~~~~~~~~dg~~l~~~~~-~~~~~~l~~~d~~tg~~~~l---~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l 404 (715)
...+..+.|+|+++.++.... .++ .|..+|+.+++...+ ......+....|++++..|+.... -..|
T Consensus 303 ---~~~v~~~~~s~~~~~l~~~~g~~dg--~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~----dg~i 373 (401)
T 4aez_A 303 ---GSQVTSLIWSPHSKEIMSTHGFPDN--NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS----DENL 373 (401)
T ss_dssp ---SSCEEEEEECSSSSEEEEEECTTTC--EEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT----TSEE
T ss_pred ---CCcEEEEEECCCCCeEEEEeecCCC--cEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC----CCcE
Confidence 013456789999997665532 344 455556656655543 233334455678888886654432 2356
Q ss_pred EEEeeccc
Q 005093 405 KYGYFVDK 412 (715)
Q Consensus 405 ~~~~~~~~ 412 (715)
.+.++.++
T Consensus 374 ~iw~~~~~ 381 (401)
T 4aez_A 374 KFWRVYDG 381 (401)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 66676544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-08 Score=106.49 Aligned_cols=258 Identities=11% Similarity=0.080 Sum_probs=147.7
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCC-CCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHG 91 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 91 (715)
....|.++|+.+.... .. ..+..+.+.+...+||| ||++|+-.+.+ + ...+| ..+...+.+.......
T Consensus 140 ~dg~i~lWd~~~~~~~-~~---~~~~gH~~~V~~l~f~p~~~~~l~s~s~D--~---~v~iwd~~~~~~~~~~~~~~~~- 209 (435)
T 4e54_B 140 KGGDIMLWNFGIKDKP-TF---IKGIGAGGSITGLKFNPLNTNQFYASSME--G---TTRLQDFKGNILRVFASSDTIN- 209 (435)
T ss_dssp TTSCEEEECSSCCSCC-EE---ECCCSSSCCCCEEEECSSCTTEEEEECSS--S---CEEEEETTSCEEEEEECCSSCS-
T ss_pred CCCEEEEEECCCCCce-eE---EEccCCCCCEEEEEEeCCCCCEEEEEeCC--C---EEEEeeccCCceeEEeccCCCC-
Confidence 4456677677655431 11 12223346789999999 67777654333 2 34566 3333333332222211
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
.++..+.|+|||+.|+.... ...|.+||+++
T Consensus 210 -----~~~~~~~~~~~~~~l~~g~~--------------------------------------------dg~i~~wd~~~ 240 (435)
T 4e54_B 210 -----IWFCSLDVSASSRMVVTGDN--------------------------------------------VGNVILLNMDG 240 (435)
T ss_dssp -----CCCCCEEEETTTTEEEEECS--------------------------------------------SSBEEEEESSS
T ss_pred -----ccEEEEEECCCCCEEEEEeC--------------------------------------------CCcEeeeccCc
Confidence 12368999999998877422 25699999987
Q ss_pred CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC
Q 005093 172 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 251 (715)
Q Consensus 172 g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (715)
.....+ ......+..+.|+|+++. ++.++..+ ..|.++|+ ...
T Consensus 241 ~~~~~~--~~h~~~v~~v~~~p~~~~----~~~s~s~d--------------~~v~iwd~-----------------~~~ 283 (435)
T 4e54_B 241 KELWNL--RMHKKKVTHVALNPCCDW----FLATASVD--------------QTVKIWDL-----------------RQV 283 (435)
T ss_dssp CBCCCS--BCCSSCEEEEEECTTCSS----EEEEEETT--------------SBCCEEET-----------------TTC
T ss_pred ceeEEE--ecccceEEeeeecCCCce----EEEEecCc--------------ceeeEEec-----------------ccc
Confidence 766665 233446788999999998 77766322 24666675 222
Q ss_pred C-c---eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCC
Q 005093 252 P-V---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDC 326 (715)
Q Consensus 252 ~-~---~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~ 326 (715)
. . .....+...+...+|||||++|+..+.+. .|.++|+.++.... +..... ..
T Consensus 284 ~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~-----------~i~iwd~~~~~~~~~~~~~~~-----------~~ 341 (435)
T 4e54_B 284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS-----------EIRVYSASQWDCPLGLIPHPH-----------RH 341 (435)
T ss_dssp CSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS-----------CEEEEESSSSSSEEEECCCCC-----------CC
T ss_pred cccceEEEeeeccccccceeECCCCCeeEEEcCCC-----------EEEEEECCCCccceEEecccc-----------cc
Confidence 2 1 12223455678899999999998776553 48888887654311 100000 00
Q ss_pred ccccccCCCCCCccccCCCEEEEEeeeCC---------eeEEEEEECCCCcEEEecCC-C-C-CceeEEEeecCCEEE
Q 005093 327 FPGLYSSSILSNPWLSDGCTMLLSSIWGS---------SQVIISVNVSSGELLRITPA-E-S-NFSWSLLTLDGDNII 392 (715)
Q Consensus 327 ~~g~~~~~~~~~~~~~dg~~l~~~~~~~~---------~~~l~~~d~~tg~~~~l~~~-~-~-~~~~~~~s~~~~~l~ 392 (715)
.. ........|++++..++......+ ...|..+|..+|+....... . . ..+...|++++..|+
T Consensus 342 ~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~la 416 (435)
T 4e54_B 342 FQ---HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLA 416 (435)
T ss_dssp CS---SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEE
T ss_pred cc---cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEE
Confidence 00 011234567777776655543221 23477789888887654322 1 1 233346888887654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.3e-09 Score=110.12 Aligned_cols=175 Identities=10% Similarity=0.071 Sum_probs=97.3
Q ss_pred CCCCCcccCCcCcccCCccCceEEEEEccC-CceEeec---C---CCCCCccceEEEecCCCCCccEEEEEeecCcccee
Q 005093 142 WKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQAVK---G---IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 214 (715)
Q Consensus 142 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-g~~~~l~---~---~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~ 214 (715)
....+.|.++ |..++......|.+||+.+ ++...+. . ......+..++|+|+|.. +++++..
T Consensus 179 ~v~~~~~~~~-~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~----~l~s~~~------ 247 (447)
T 3dw8_B 179 HINSISINSD-YETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN----TFVYSSS------ 247 (447)
T ss_dssp CCCEEEECTT-SSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT----EEEEEET------
T ss_pred ceEEEEEcCC-CCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc----EEEEEeC------
Confidence 3445567776 4555444568899999983 3333210 0 122335778999999944 5555422
Q ss_pred eeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-----ceecCCCCc------------cccceeEcCCCCeEEE
Q 005093 215 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----VVNLTESIS------------SAFFPRFSPDGKFLVF 277 (715)
Q Consensus 215 g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~lt~~~~------------~~~~~~~spdg~~l~~ 277 (715)
+..|.++|+ .++. ...+..... .+....|+|||+.|+.
T Consensus 248 --------dg~i~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 302 (447)
T 3dw8_B 248 --------KGTIRLCDM-----------------RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT 302 (447)
T ss_dssp --------TSCEEEEET-----------------TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred --------CCeEEEEEC-----------------cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE
Confidence 236788886 4443 344554443 6888999999999886
Q ss_pred EecCCCCCCCCccccceeEeeecCC-CCCCC-cccceeeeee-ceecCCCCCccccccCCCCCCccccCCCEEEEEeeeC
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPT-NGNFS-SLEKIVDVIP-VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 354 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~-~~~~~-lt~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~ 354 (715)
.+. . .|.++|+.+ +.... +.... .+.. +........ ......++|+|||+.| ++...+
T Consensus 303 ~~~-~-----------~v~iwd~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-----i~~~~~~~~s~~~~~l-~s~s~d 363 (447)
T 3dw8_B 303 RDY-L-----------SVKVWDLNMENRPVETYQVHE-YLRSKLCSLYENDC-----IFDKFECCWNGSDSVV-MTGSYN 363 (447)
T ss_dssp EES-S-----------EEEEEETTCCSSCSCCEESCG-GGTTTHHHHHHTSG-----GGCCCCEEECTTSSEE-EEECST
T ss_pred eeC-C-----------eEEEEeCCCCccccceeeccc-cccccccccccccc-----cccceEEEECCCCCEE-EEeccC
Confidence 554 2 488888875 33211 11000 0000 000000000 0012347899999866 444444
Q ss_pred CeeEEEEEECCCCcEEEec
Q 005093 355 SSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 355 ~~~~l~~~d~~tg~~~~l~ 373 (715)
+ .|+.+|+.+++...+.
T Consensus 364 g--~v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 364 N--FFRMFDRNTKRDITLE 380 (447)
T ss_dssp T--EEEEEETTTCCEEEEE
T ss_pred C--EEEEEEcCCCcceeee
Confidence 4 5677798888876654
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-10 Score=127.57 Aligned_cols=132 Identities=20% Similarity=0.169 Sum_probs=91.1
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHHh-CCcEEEEEcCCC-CCCCchhhhhcCCCC
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSS-VGYSLLIVNYRG-SLGFGEEALQSLPGK 535 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~-~~~~~~la~-~G~~vi~~d~rG-~~~~g~~~~~~~~~~ 535 (715)
+.|.+.+ .+|.|+.. ..++.|+||++|||++..+.... ......|++ .|++|+.+|||. .-||+... ..+..
T Consensus 93 ~edcl~l--~v~~P~~~-~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~g~vvv~~nYRlg~~Gf~~~~--~~~~~ 167 (543)
T 2ha2_A 93 SEDCLYL--NVWTPYPR-PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALP--GSREA 167 (543)
T ss_dssp ESCCCEE--EEEEESSC-CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCSSC
T ss_pred CCcCCeE--EEeecCCC-CCCCCeEEEEECCCccccCCCCCCcCChHHHHhcCCEEEEEecccccccccccCC--CCCCC
Confidence 3455555 57788642 34568999999999876544321 122345554 899999999994 22232211 01112
Q ss_pred CCccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 005093 536 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 595 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~ 595 (715)
.+...+.|+.++++|+.++. ..|+++|.|+|+|+||.+++.++... +.+|+++|+.+|..
T Consensus 168 ~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 168 PGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 23345889999999998862 37999999999999999998877642 46899999999853
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-08 Score=102.99 Aligned_cols=233 Identities=12% Similarity=0.045 Sum_probs=138.0
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCc-c-EEEEecCccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ-L-EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
+.+.+...+|||++..+++....+ +.-.+|.+..... . ..+..+. +... .+..+.|+|||++|+-.+.
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D-~~v~~W~~~~~~~~~~~~~~~~~-~h~~------~v~~~~~s~dg~~l~s~s~-- 85 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRD-KTLISWKLTGDDQKFGVPVRSFK-GHSH------IVQDCTLTADGAYALSASW-- 85 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETT-SEEEEEEEEEETTEEEEEEEEEE-CCSS------CEEEEEECTTSSEEEEEET--
T ss_pred ccceEEEEEccCCCccEEEEecCC-ccEEEecCCCCCccccccceEEe-CCcc------cEEEEEECCCCCEEEEEeC--
Confidence 346789999999874444443333 3333444432111 1 1111111 1111 2278999999998877532
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCC
Q 005093 119 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
...|.+||+++++..... ......+..+.|+|+++.
T Consensus 86 ------------------------------------------D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~- 121 (319)
T 3frx_A 86 ------------------------------------------DKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASM- 121 (319)
T ss_dssp ------------------------------------------TSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCE-
T ss_pred ------------------------------------------CCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCE-
Confidence 267999999988764331 233345778999999986
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCC------
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG------ 272 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg------ 272 (715)
|+..+ .+..|.++|+ .+.....+......+....|+|++
T Consensus 122 ---l~s~s---------------~D~~i~vwd~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 122 ---IISGS---------------RDKTIKVWTI-----------------KGQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp ---EEEEE---------------TTSCEEEEET-----------------TSCEEEEECCCSSCEEEEEECCC------C
T ss_pred ---EEEEe---------------CCCeEEEEEC-----------------CCCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 66544 2235777786 555566666666677888888854
Q ss_pred CeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEee
Q 005093 273 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 352 (715)
Q Consensus 273 ~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~ 352 (715)
..|+-.+.+ ..|.++|+.+.+.... +.+ +...+..+.|+|||+.| ++..
T Consensus 167 ~~l~s~~~d-----------~~i~~wd~~~~~~~~~------------------~~~-h~~~v~~~~~sp~g~~l-~s~~ 215 (319)
T 3frx_A 167 VTIISAGND-----------KMVKAWNLNQFQIEAD------------------FIG-HNSNINTLTASPDGTLI-ASAG 215 (319)
T ss_dssp CEEEEEETT-----------SCEEEEETTTTEEEEE------------------ECC-CCSCEEEEEECTTSSEE-EEEE
T ss_pred cEEEEEeCC-----------CEEEEEECCcchhhee------------------ecC-CCCcEEEEEEcCCCCEE-EEEe
Confidence 355544443 2477888766432100 000 11234567899999854 4544
Q ss_pred eCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEE
Q 005093 353 WGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 353 ~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
.++ .|..+|+.+++..........+....|++++..++...
T Consensus 216 ~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 216 KDG--EIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp TTC--EEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE
T ss_pred CCC--eEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc
Confidence 444 56666888887655544444455568889887766543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-09 Score=124.65 Aligned_cols=243 Identities=10% Similarity=0.033 Sum_probs=145.2
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEe-cCccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQTVHG 91 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~ 91 (715)
...|.++|+.++. ....++.. .+.+...+|||||++||.....+ ...+| .+++...... ....
T Consensus 34 ~g~v~iwd~~~~~-~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~--- 99 (814)
T 3mkq_A 34 SGRVEIWNYETQV-EVRSIQVT-----ETPVRAGKFIARKNWIIVGSDDF-----RIRVFNYNTGEKVVDFEAHPDY--- 99 (814)
T ss_dssp TSEEEEEETTTTE-EEEEEECC-----SSCEEEEEEEGGGTEEEEEETTS-----EEEEEETTTCCEEEEEECCSSC---
T ss_pred CCEEEEEECCCCc-eEEEEecC-----CCcEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEecCCCC---
Confidence 3456666665433 22223222 26789999999999999886643 34455 4444433332 2222
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
+..+.|||||++|+..+. ...|.+|++++
T Consensus 100 -------v~~~~~s~~~~~l~~~~~--------------------------------------------dg~i~vw~~~~ 128 (814)
T 3mkq_A 100 -------IRSIAVHPTKPYVLSGSD--------------------------------------------DLTVKLWNWEN 128 (814)
T ss_dssp -------EEEEEECSSSSEEEEEET--------------------------------------------TSEEEEEEGGG
T ss_pred -------EEEEEEeCCCCEEEEEcC--------------------------------------------CCEEEEEECCC
Confidence 278999999999887532 25699999987
Q ss_pred C-ceEeecCCCCCCccceEEEec-CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCC
Q 005093 172 G-EVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 249 (715)
Q Consensus 172 g-~~~~l~~~~~~~~~~~~~~sp-dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (715)
+ ...... ......+..+.|+| |++. |+... .+..|.++|+. .
T Consensus 129 ~~~~~~~~-~~~~~~v~~~~~~p~~~~~----l~~~~---------------~dg~v~vwd~~----------------~ 172 (814)
T 3mkq_A 129 NWALEQTF-EGHEHFVMCVAFNPKDPST----FASGC---------------LDRTVKVWSLG----------------Q 172 (814)
T ss_dssp TSEEEEEE-ECCSSCEEEEEEETTEEEE----EEEEE---------------TTSEEEEEETT----------------C
T ss_pred CceEEEEE-cCCCCcEEEEEEEcCCCCE----EEEEe---------------CCCeEEEEECC----------------C
Confidence 6 332221 23344677899999 7775 55544 23468888861 2
Q ss_pred CCCceecCCC-CccccceeEcC--CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCC
Q 005093 250 DLPVVNLTES-ISSAFFPRFSP--DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC 326 (715)
Q Consensus 250 ~~~~~~lt~~-~~~~~~~~~sp--dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~ 326 (715)
......+... ...+..+.|+| ||+.|+..+.+ ..|.++|+.++...... ..
T Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----------g~i~~~d~~~~~~~~~~----------~~----- 226 (814)
T 3mkq_A 173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD-----------LTIKIWDYQTKSCVATL----------EG----- 226 (814)
T ss_dssp SSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT-----------SEEEEEETTTTEEEEEE----------EC-----
T ss_pred CcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC-----------CEEEEEECCCCcEEEEE----------cC-----
Confidence 2333334333 35678899999 99988766644 24888888764421100 00
Q ss_pred ccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-CCCceeEEEeecCCEE
Q 005093 327 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNI 391 (715)
Q Consensus 327 ~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s~~~~~l 391 (715)
+...+..+.|+|+++.++ +...++ .|..+|+.+++....... ...+....+++++..+
T Consensus 227 ----~~~~v~~~~~~~~~~~l~-~~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 227 ----HMSNVSFAVFHPTLPIII-SGSEDG--TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285 (814)
T ss_dssp ----CSSCEEEEEECSSSSEEE-EEETTS--CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred ----CCCCEEEEEEcCCCCEEE-EEeCCC--eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence 111345677999998554 444444 466668888776554433 2334445667776643
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-08 Score=102.17 Aligned_cols=222 Identities=11% Similarity=0.043 Sum_probs=134.0
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
+.+...+|||||++|+-....+ ...+| .+++..+....... .+..+.|+|||+.|+..+.
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg-----~v~lWd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~s~---- 75 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSG-----RVELWNYETQVEVRSIQVTET---------PVRAGKFIARKNWIIVGSD---- 75 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSS---------CEEEEEEEGGGTEEEEEET----
T ss_pred CceEEEEECCCCCEEEEEcCCC-----cEEEEECCCCceeEEeeccCC---------cEEEEEEeCCCCEEEEECC----
Confidence 6789999999999998765542 45566 33433333322111 2268999999998877533
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCcc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
...|.+||+++++..... ......+..++|+|+++.
T Consensus 76 ----------------------------------------d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~--- 111 (304)
T 2ynn_A 76 ----------------------------------------DFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPY--- 111 (304)
T ss_dssp ----------------------------------------TSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSE---
T ss_pred ----------------------------------------CCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCE---
Confidence 267999999988754321 233345778999999986
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-Cc-eecCCCCccccceeEcC-CCCeEEE
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PV-VNLTESISSAFFPRFSP-DGKFLVF 277 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~lt~~~~~~~~~~~sp-dg~~l~~ 277 (715)
|+..+ .+..|.++|+ .++ .. ..+..+...+...+|+| |++.|+-
T Consensus 112 -l~sgs---------------~D~~v~lWd~-----------------~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 112 -VLSGS---------------DDLTVKLWNW-----------------ENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp -EEEEE---------------TTSCEEEEEG-----------------GGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred -EEEEC---------------CCCeEEEEEC-----------------CCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 65443 2235777786 333 22 34555666788899999 5676765
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCcccc--CCCEEEEEeeeC
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS--DGCTMLLSSIWG 354 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--dg~~l~~~~~~~ 354 (715)
.+.+. .|.++|+.++.... +.... ...+..+.|++ ++. ++++...+
T Consensus 159 gs~D~-----------~v~iwd~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~~-~l~s~s~D 207 (304)
T 2ynn_A 159 GCLDR-----------TVKVWSLGQSTPNFTLTTGQ-------------------ERGVNYVDYYPLPDKP-YMITASDD 207 (304)
T ss_dssp EETTS-----------EEEEEETTCSSCSEEEECCC-------------------TTCEEEEEECCSTTCC-EEEEEETT
T ss_pred EeCCC-----------eEEEEECCCCCccceeccCC-------------------cCcEEEEEEEEcCCCC-EEEEEcCC
Confidence 55442 48888886544311 10000 00122234444 665 45555555
Q ss_pred CeeEEEEEECCCCcEEEec-CCCCCceeEEEeecCCEEE
Q 005093 355 SSQVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNII 392 (715)
Q Consensus 355 ~~~~l~~~d~~tg~~~~l~-~~~~~~~~~~~s~~~~~l~ 392 (715)
+ .|..+|+.+++..... .....+....|++++..|+
T Consensus 208 ~--~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 208 L--TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp S--EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred C--eEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence 5 4555688887765443 3333445567788777554
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.8e-10 Score=134.05 Aligned_cols=273 Identities=10% Similarity=-0.027 Sum_probs=158.2
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
..+...++||+|+.++.....+ .+.... ..++...... +..+ .+..+.|||||++|+..+.+....
T Consensus 962 ~~i~~~~~sp~g~~l~~g~~~g----~i~i~d~~~~~~~~~~~---~h~~------~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A 962 AQVSCCCLSPHLEYVAFGDEDG----AIKIIELPNNRVFSSGV---GHKK------AVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTS----CCEEEETTTTSCEEECC---CCSS------CCCCEEECSSSSCEEEECSSSBEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCC----CEEEEEcCCCceeeecc---cCCC------ceEEEEECCCCCEEEEEcCCCEEE
Confidence 4578889999999998876553 233333 3344332221 1111 237999999999998876543221
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccE
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~ 201 (715)
.|........ ...........+.+.++ +..+.......|.+||+.+++..... ......+..++|||||+.
T Consensus 1029 --vwd~~~~~~~-~~~~~~~~v~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~---- 1099 (1249)
T 3sfz_A 1029 --VWNWQTGDYV-FLQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATK---- 1099 (1249)
T ss_dssp --EEETTTTEEE-CCBCCSSCEEEEEECSS-SEEEEEESSSEEEEEETTTTCCCEEE-ECCSSCCCCEEECSSSSS----
T ss_pred --EEECCCCceE-EEecCCCcEEEEEEcCC-CcEEEEECCCcEEEEECCCCceeEEE-cccCCcEEEEEECCCCCE----
Confidence 2221111100 01111222223444444 33334444578999999988754331 233445778999999998
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
++..+ .+..|.++|+. .+.....+..+...+..++|||||+.|+..+.+
T Consensus 1100 l~s~s---------------~d~~v~iwd~~----------------~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1100 FSSTS---------------ADKTAKIWSFD----------------LLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp CEEEC---------------CSSCCCEECSS----------------SSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred EEEEc---------------CCCcEEEEECC----------------CcceeeeeccCCCcEEEEEECCCCCEEEEEeCC
Confidence 77665 22356677761 333445566666778899999999999877755
Q ss_pred CCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 005093 282 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 361 (715)
Q Consensus 282 ~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~ 361 (715)
. .|+++|+.+++.......... .... ..+...+..++|+|||+.++... ..+..
T Consensus 1149 g-----------~i~vwd~~~~~~~~~~~~~~~---------~~~~-~~~~~~v~~l~fs~dg~~l~s~~-----g~v~v 1202 (1249)
T 3sfz_A 1149 G-----------EIRIWNVSDGQLLHSCAPISV---------EEGT-ATHGGWVTDVCFSPDSKTLVSAG-----GYLKW 1202 (1249)
T ss_dssp S-----------CCCEEESSSSCCCCCCCCCC-----------------CCSCCCEEEECTTSSCEEEES-----SSEEE
T ss_pred C-----------EEEEEECCCCceEEEeccccc---------cccc-cccCceEEEEEECCCCCEEEECC-----CeEEE
Confidence 3 378888887664322100000 0000 01223466788999999765432 35777
Q ss_pred EECCCCcEEEecC-CCCCceeEEEeecCCEEEEE
Q 005093 362 VNVSSGELLRITP-AESNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 362 ~d~~tg~~~~l~~-~~~~~~~~~~s~~~~~l~~~ 394 (715)
+|+.+|+...... ....+....|++++..++..
T Consensus 1203 wd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 1236 (1249)
T 3sfz_A 1203 WNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTV 1236 (1249)
T ss_dssp BCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEE
T ss_pred EECCCCceeeeeeccCCcccEEEECCCCCEEEEe
Confidence 7888887654433 22234446788888876653
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-10 Score=123.05 Aligned_cols=131 Identities=20% Similarity=0.224 Sum_probs=90.1
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc-ch--HHHH-H-HHhCCcEEEEEcCCCCC-CCc--hhhhh
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS--KSLA-F-LSSVGYSLLIVNYRGSL-GFG--EEALQ 530 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~-~~--~~~~-~-la~~G~~vi~~d~rG~~-~~g--~~~~~ 530 (715)
+.|.+.+ .+|.|+.....++.|+||++|||++..+... +. .++. . ..+.|++|+.+|||... ++. .....
T Consensus 94 sedcl~l--~v~~P~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~~ 171 (534)
T 1llf_A 94 SEDCLTI--NVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA 171 (534)
T ss_dssp CSCCCEE--EEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCCCeEE--EEEECCCCCCCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCcccccc
Confidence 3455444 5889976445668899999999987765443 21 1222 2 23478999999999643 111 01111
Q ss_pred cCCCCCCccchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhC--------CCceeEEEecCCc
Q 005093 531 SLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPL 594 (715)
Q Consensus 531 ~~~~~~~~~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~~~ 594 (715)
. ..+...+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++... +.+|+++|+.+|.
T Consensus 172 ~---~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~ 243 (534)
T 1llf_A 172 E---GSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp H---TCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred c---CCCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence 1 12334488999999999885 247999999999999999887766643 4589999999984
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-09 Score=111.95 Aligned_cols=206 Identities=11% Similarity=0.096 Sum_probs=123.0
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
.+.+...+|||||++|+.....+ ...+| ..++....... ..+ .+..++|+|+++.++..+..
T Consensus 139 ~~~V~~v~~spdg~~l~sgs~dg-----~v~iwd~~~~~~~~~~~~---h~~------~v~~v~~s~~~~~~~~s~~~-- 202 (357)
T 4g56_B 139 DDIVKTLSVFSDGTQAVSGGKDF-----SVKVWDLSQKAVLKSYNA---HSS------EVNCVAACPGKDTIFLSCGE-- 202 (357)
T ss_dssp SSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTTEEEEEECC---CSS------CEEEEEECTTCSSCEEEEET--
T ss_pred CCCEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcC---CCC------CEEEEEEccCCCceeeeecc--
Confidence 35688999999999998765543 34556 34443333321 111 22789999999765554332
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec-CCCCCCccceEEEecCCCCC
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~-~~~~~~~~~~~~~spdg~~~ 198 (715)
...|.+||+.+++..... .......+..++|+|++..
T Consensus 203 -----------------------------------------dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~- 240 (357)
T 4g56_B 203 -----------------------------------------DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD- 240 (357)
T ss_dssp -----------------------------------------TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT-
T ss_pred -----------------------------------------CCceEEEECCCCceeeeeeeccccccccchhhhhcccc-
Confidence 256899999887754431 1223345678899999887
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-CceecCCCCccccceeEcCCCCe-EE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKF-LV 276 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~spdg~~-l~ 276 (715)
++.++. .+..|.++|+ .++ ....+......+...+|||||+. |+
T Consensus 241 ---~la~g~--------------~d~~i~~wd~-----------------~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 241 ---TFACGD--------------ETGNVSLVNI-----------------KNPDSAQTSAVHSQNITGLAYSYHSSPFLA 286 (357)
T ss_dssp ---EEEEEE--------------SSSCEEEEES-----------------SCGGGCEEECCCSSCEEEEEECSSSSCCEE
T ss_pred ---eEEEee--------------cccceeEEEC-----------------CCCcEeEEEeccceeEEEEEEcCCCCCEEE
Confidence 776653 2236888887 433 44556666677889999999965 44
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCcccc-CCCEEEEEeeeCC
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIWGS 355 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-dg~~l~~~~~~~~ 355 (715)
-.+.+ ..|+++|+.+++...... +...+..++|+| |++ ++++...++
T Consensus 287 sgs~D-----------~~i~iwd~~~~~~~~~~~--------------------H~~~V~~vafsP~d~~-~l~s~s~Dg 334 (357)
T 4g56_B 287 SISED-----------CTVAVLDADFSEVFRDLS--------------------HRDFVTGVAWSPLDHS-KFTTVGWDH 334 (357)
T ss_dssp EEETT-----------SCEEEECTTSCEEEEECC--------------------CSSCEEEEEECSSSTT-EEEEEETTS
T ss_pred EEeCC-----------CEEEEEECCCCcEeEECC--------------------CCCCEEEEEEeCCCCC-EEEEEcCCC
Confidence 44433 248888987754321110 112345678998 676 556666666
Q ss_pred eeEEEEEECCCCcEEEe
Q 005093 356 SQVIISVNVSSGELLRI 372 (715)
Q Consensus 356 ~~~l~~~d~~tg~~~~l 372 (715)
...+|.+.. .++...+
T Consensus 335 ~v~iW~~~~-~~~~~~~ 350 (357)
T 4g56_B 335 KVLHHHLPS-EGRTENL 350 (357)
T ss_dssp CEEEEECC---------
T ss_pred eEEEEECCC-CCccccc
Confidence 666665433 2444443
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-08 Score=104.04 Aligned_cols=229 Identities=12% Similarity=0.004 Sum_probs=131.3
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEe-cCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
+...+...+|||||+.|+-.... ....+| ..++....+. .... +..+.|||||++|+..+.
T Consensus 75 h~~~V~~~~~~~~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~~h~~~----------v~~v~~sp~~~~l~s~~~- 138 (343)
T 2xzm_R 75 HNHFVSDLALSQENCFAISSSWD-----KTLRLWDLRTGTTYKRFVGHQSE----------VYSVAFSPDNRQILSAGA- 138 (343)
T ss_dssp CSSCEEEEEECSSTTEEEEEETT-----SEEEEEETTSSCEEEEEECCCSC----------EEEEEECSSTTEEEEEET-
T ss_pred CCCceEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcEEEEEcCCCCc----------EEEEEECCCCCEEEEEcC-
Confidence 33668899999999998865544 245566 3444333322 2222 278999999998876532
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC-CCCCCccceEEEecCCC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~~~~spdg~ 196 (715)
...|.+||+.+........ ......+..+.|+|+++
T Consensus 139 -------------------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 139 -------------------------------------------EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175 (343)
T ss_dssp -------------------------------------------TSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCC
T ss_pred -------------------------------------------CCEEEEEeccCCceeeeecccCCCceeeeeeeccccc
Confidence 2568999987554443310 12233567889999984
Q ss_pred CCc------cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcC
Q 005093 197 GLH------QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP 270 (715)
Q Consensus 197 ~~~------~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~sp 270 (715)
... . ++.++. .+..|.++|. .......+..+...+...+|||
T Consensus 176 ~~~~~~~~~~-~l~s~~--------------~d~~i~iwd~-----------------~~~~~~~~~~h~~~v~~~~~s~ 223 (343)
T 2xzm_R 176 SANKVQPFAP-YFASVG--------------WDGRLKVWNT-----------------NFQIRYTFKAHESNVNHLSISP 223 (343)
T ss_dssp SCSCCCSSCC-EEEEEE--------------TTSEEEEEET-----------------TTEEEEEEECCSSCEEEEEECT
T ss_pred cccccCCCCC-EEEEEc--------------CCCEEEEEcC-----------------CCceeEEEcCccccceEEEECC
Confidence 200 0 333332 2235777774 4444445556666788899999
Q ss_pred CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEE
Q 005093 271 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 350 (715)
Q Consensus 271 dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~ 350 (715)
||++|+-.+.+. .|.++|+........... ....+..++|+|++..+ ..
T Consensus 224 ~g~~l~sgs~dg-----------~v~iwd~~~~~~~~~~~~-------------------~~~~v~~v~~sp~~~~l-a~ 272 (343)
T 2xzm_R 224 NGKYIATGGKDK-----------KLLIWDILNLTYPQREFD-------------------AGSTINQIAFNPKLQWV-AV 272 (343)
T ss_dssp TSSEEEEEETTC-----------EEEEEESSCCSSCSEEEE-------------------CSSCEEEEEECSSSCEE-EE
T ss_pred CCCEEEEEcCCC-----------eEEEEECCCCcccceeec-------------------CCCcEEEEEECCCCCEE-EE
Confidence 999998766552 488888743221110000 00124567899998754 33
Q ss_pred eeeCCeeEEEEEECCCCcEE---EecC-----------CCCCceeEEEeecCCEEEEE
Q 005093 351 SIWGSSQVIISVNVSSGELL---RITP-----------AESNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 351 ~~~~~~~~l~~~d~~tg~~~---~l~~-----------~~~~~~~~~~s~~~~~l~~~ 394 (715)
+. ++ .+..+|+.+++.. .+.. ....+....|++++..|+..
T Consensus 273 ~~-d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 273 GT-DQ--GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp EE-SS--CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred EC-CC--CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 33 33 3555677665432 2221 11123335677887766543
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.4e-11 Score=129.23 Aligned_cols=130 Identities=22% Similarity=0.223 Sum_probs=89.1
Q ss_pred CCCCceEEEEEEec-----CCCCCCCC----CcEEEEEcCCCCCCCCccc-hHHHHHHHhCCcEEEEEcCCCCC-CCchh
Q 005093 459 KGAQKPFEAIFVSS-----SHKKDCSC----DPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSL-GFGEE 527 (715)
Q Consensus 459 ~~~g~~l~~~l~~P-----~~~~~~~~----~P~vv~iHGg~~~~~~~~~-~~~~~~la~~G~~vi~~d~rG~~-~~g~~ 527 (715)
+.|.+. ..+|.| ... ..++ .|+||++|||++..+.... ......|+++|++|+.+|||... ||...
T Consensus 87 ~edcL~--lnv~~P~~~~~~~~-~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~ 163 (551)
T 2fj0_A 87 SEACIH--ANIHVPYYALPRDA-ADKNRFAGLPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSL 163 (551)
T ss_dssp CSCCCE--EEEEEEGGGCCCC---------CEEEEEEECCSTTTSCCSCTTTCBCTTGGGGSCEEEEECCCCHHHHHCCC
T ss_pred CCCCeE--EEEEecCccccccc-cccCcCCCCCEEEEEcCCccccCCCcccccCHHHHHhCCeEEEEeCCcCCccccccC
Confidence 345544 457788 422 2233 8999999998876544322 12345677899999999999531 12111
Q ss_pred hhhcCCCCCCccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhh--CCCceeEEEecCCc
Q 005093 528 ALQSLPGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 594 (715)
Q Consensus 528 ~~~~~~~~~~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~ 594 (715)
.. ....+...+.|+.++++|+.++. ..|+++|.|+|+|+||.+++.++.. .+.+|+++|+.+|.
T Consensus 164 ~~---~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~ 232 (551)
T 2fj0_A 164 NS---TSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGT 232 (551)
T ss_dssp SS---SSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCC
T ss_pred cc---cCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCC
Confidence 10 11223345899999999998862 3689999999999999999988765 35689999999985
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.04 E-value=8.8e-09 Score=108.78 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=112.4
Q ss_pred ceEEEEEccCCc--------eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEeccc
Q 005093 162 PSLFVININSGE--------VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 233 (715)
Q Consensus 162 ~~l~~~~~~~g~--------~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 233 (715)
..|.+|++.++. ...+ ......+..+.|+|+|+. +++++.. +..|.++|+
T Consensus 104 g~v~vw~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~----~l~s~~~--------------dg~i~iwd~-- 161 (402)
T 2aq5_A 104 CTVMVWEIPDGGLVLPLREPVITL--EGHTKRVGIVAWHPTAQN----VLLSAGC--------------DNVILVWDV-- 161 (402)
T ss_dssp SEEEEEECCTTCCSSCBCSCSEEE--ECCSSCEEEEEECSSBTT----EEEEEET--------------TSCEEEEET--
T ss_pred CeEEEEEccCCCCccccCCceEEe--cCCCCeEEEEEECcCCCC----EEEEEcC--------------CCEEEEEEC--
Confidence 569999998763 2333 223446778999999977 7776632 236888887
Q ss_pred ccchhhhhhhhccCCCCCC-ceec--CCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCccc
Q 005093 234 YKSEASELELKESSSEDLP-VVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 310 (715)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~l--t~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~ 310 (715)
.+++ ...+ ......+....|+|||+.|+..+.+. .|.++|+.+++....
T Consensus 162 ---------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~-- 213 (402)
T 2aq5_A 162 ---------------GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK-----------RVRVIEPRKGTVVAE-- 213 (402)
T ss_dssp ---------------TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTS-----------EEEEEETTTTEEEEE--
T ss_pred ---------------CCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCC-----------cEEEEeCCCCceeee--
Confidence 4444 3445 45566788999999999998777542 588899877543111
Q ss_pred ceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE--EEec-CCCCCceeEEEeec
Q 005093 311 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL--LRIT-PAESNFSWSLLTLD 387 (715)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~--~~l~-~~~~~~~~~~~s~~ 387 (715)
....... ..+..+.|++|++.++..........|..+|+.+++. .... .....+....|+++
T Consensus 214 --------~~~~~~~-------~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 278 (402)
T 2aq5_A 214 --------KDRPHEG-------TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD 278 (402)
T ss_dssp --------EECSSCS-------SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred --------eccCCCC-------CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence 0000000 0135667999987554443223456788889877553 1222 22233455678899
Q ss_pred CCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 388 GDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 388 ~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
++.++++...- ..|.+.++.++
T Consensus 279 ~~~l~~~g~~d---g~i~i~d~~~~ 300 (402)
T 2aq5_A 279 TNIVYLCGKGD---SSIRYFEITSE 300 (402)
T ss_dssp TTEEEEEETTC---SCEEEEEECSS
T ss_pred CCEEEEEEcCC---CeEEEEEecCC
Confidence 88877665322 24666676544
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-08 Score=106.47 Aligned_cols=218 Identities=13% Similarity=0.037 Sum_probs=114.3
Q ss_pred ceEEeeCCCCceE-EEEec-------C-----CCCCCeEEEEecCCccEEEEec-CccccccccCCCcccceeecCCCCe
Q 005093 45 ASAVVPSPSGSKL-LVVRN-------P-----ENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETL 110 (715)
Q Consensus 45 ~~~~~~Spdg~~l-a~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wSpDg~~ 110 (715)
....+|||||++| +|+.+ . .++.-.+|.+...|+....... ..... .....+.|||||++
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~spdG~~ 158 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQEN------TGIHGMVFDPTETY 158 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTT------CCEEEEEECTTSSE
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCC------CcceEEEECCCCCE
Confidence 4457899999974 45543 1 1133344544434544433321 10000 11268999999998
Q ss_pred EEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc-CCceEeec--CCCC-CCcc
Q 005093 111 IAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVK--GIPK-SLSV 186 (715)
Q Consensus 111 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~l~--~~~~-~~~~ 186 (715)
|+.. .. ....|++|+++ +|+...+. ..+. ....
T Consensus 159 l~~~-~~------------------------------------------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 159 LYSA-DL------------------------------------------TANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp EEEE-ET------------------------------------------TTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred EEEE-cC------------------------------------------CCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 7553 22 12579999998 78765431 0111 3346
Q ss_pred ceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-------ecCCC
Q 005093 187 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTES 259 (715)
Q Consensus 187 ~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~lt~~ 259 (715)
..++|||||+. |+.... . ...|.+++++ .++++.. .+...
T Consensus 196 ~~~~~spdg~~----l~v~~~-~-------------~~~v~v~~~~---------------~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 196 RWVAMHPTGNY----LYALME-A-------------GNRICEYVID---------------PATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp EEEEECTTSSE----EEEEET-T-------------TTEEEEEEEC---------------TTTCCEEEEEEEEESSCTT
T ss_pred CEeEECCCCCE----EEEEEC-C-------------CCeEEEEEEe---------------CCCCcEEEccceEEcCCCC
Confidence 77899999997 655432 1 1234444331 0344321 11111
Q ss_pred -C--c-------ccccee-EcCCCCeEEEEecCCCCCCCCccccceeEeeecC-CCCCCCcccceeeeeeceecCCCCCc
Q 005093 260 -I--S-------SAFFPR-FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP-TNGNFSSLEKIVDVIPVVQCAEGDCF 327 (715)
Q Consensus 260 -~--~-------~~~~~~-~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~-~~~~~~lt~~~~~~~~~~~~~~~~~~ 327 (715)
. . ....++ |||||++|+ ++++.. . ......|.+++++ +++...+. .....
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~-v~~~~~---~-~~~~~~i~v~~~~~~g~~~~~~-------~~~~~------ 304 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMF-ASSRAN---K-FELQGYIAGFKLRDCGSIEKQL-------FLSPT------ 304 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEE-EEEEES---S-TTSCCEEEEEEECTTSCEEEEE-------EEEEC------
T ss_pred cCCcccccccccccccEEEECCCCCEEE-EECCCC---C-CCCCCeEEEEEECCCCCEEEee-------eeeec------
Confidence 0 1 356788 999999885 443321 0 0011257777765 33321110 00000
Q ss_pred cccccCCCCCCcccc---CCCEEEEEeeeCCeeEEEEEECC
Q 005093 328 PGLYSSSILSNPWLS---DGCTMLLSSIWGSSQVIISVNVS 365 (715)
Q Consensus 328 ~g~~~~~~~~~~~~~---dg~~l~~~~~~~~~~~l~~~d~~ 365 (715)
.......++|+| ||++|++.....+...+|.++.+
T Consensus 305 ---~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 305 ---PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ---SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ---CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 001345678899 89987776555566677777753
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-08 Score=104.52 Aligned_cols=239 Identities=11% Similarity=0.042 Sum_probs=140.8
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCc----cEEEEecCccccccccCCCcccceeecCCCC-eEEEEeec
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ----LEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEE 117 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~-~la~~~~~ 117 (715)
+.+...+|||||+.|+..... +.-.+|.+. .++ ...+...... +..+.|+|||+ .|+..+.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d--~~v~iw~~~-~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~~- 77 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWD--GSLTVYKFD-IQAKNVDLLQSLRYKHP----------LLCCNFIDNTDLQIYVGTV- 77 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETT--SEEEEEEEE-TTTTEEEEEEEEECSSC----------EEEEEEEESSSEEEEEEET-
T ss_pred CcEEEEEEcCCCCEEEEEcCC--CeEEEEEeC-CCCccccceeeeecCCc----------eEEEEECCCCCcEEEEEcC-
Confidence 568999999999999877554 222333333 333 2222222222 37999999999 7877532
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEc-cCCceEeecCCC--CCCccceEEEecC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAVKGIP--KSLSVGQVVWAPL 194 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~g~~~~l~~~~--~~~~~~~~~~spd 194 (715)
...|++||+ ++++...+ .. ....+..+.|+|
T Consensus 78 -------------------------------------------dg~i~~wd~~~~~~~~~~--~~~~~~~~v~~l~~~~- 111 (342)
T 1yfq_A 78 -------------------------------------------QGEILKVDLIGSPSFQAL--TNNEANLGICRICKYG- 111 (342)
T ss_dssp -------------------------------------------TSCEEEECSSSSSSEEEC--BSCCCCSCEEEEEEET-
T ss_pred -------------------------------------------CCeEEEEEeccCCceEec--cccCCCCceEEEEeCC-
Confidence 256999999 99988777 33 455678899999
Q ss_pred CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC---------CCceecCCCCccccc
Q 005093 195 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED---------LPVVNLTESISSAFF 265 (715)
Q Consensus 195 g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~lt~~~~~~~~ 265 (715)
++. |+..+ .+..|.++|+ .+ ++..........+..
T Consensus 112 ~~~----l~s~~---------------~d~~i~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~v~~ 155 (342)
T 1yfq_A 112 DDK----LIAAS---------------WDGLIEVIDP-----------------RNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp TTE----EEEEE---------------TTSEEEEECH-----------------HHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred CCE----EEEEc---------------CCCeEEEEcc-----------------cccccccccccCCeeeEEeeCCceEE
Confidence 765 55544 2236888886 22 332222224556788
Q ss_pred eeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCC-CCCCCcccceeeeeeceecCCCCCccccccCCCCCCcccc-C
Q 005093 266 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-D 343 (715)
Q Consensus 266 ~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~-~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-d 343 (715)
..|+|++ |+..+.+ ..|+++|+.+ +....... . .. ....+..+.|+| +
T Consensus 156 ~~~~~~~--l~~~~~d-----------~~i~i~d~~~~~~~~~~~~-~--------~~--------~~~~i~~i~~~~~~ 205 (342)
T 1yfq_A 156 MDTNSSR--LIVGMNN-----------SQVQWFRLPLCEDDNGTIE-E--------SG--------LKYQIRDVALLPKE 205 (342)
T ss_dssp EEECSSE--EEEEEST-----------TEEEEEESSCCTTCCCEEE-E--------CS--------CSSCEEEEEECSGG
T ss_pred EEecCCc--EEEEeCC-----------CeEEEEECCccccccceee-e--------cC--------CCCceeEEEECCCC
Confidence 9999987 5544433 2588889876 33211000 0 00 011345667999 9
Q ss_pred CCEEEEEeeeCCeeEEEEEECC-----CCcEEEecCCCC---------CceeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 005093 344 GCTMLLSSIWGSSQVIISVNVS-----SGELLRITPAES---------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 409 (715)
Q Consensus 344 g~~l~~~~~~~~~~~l~~~d~~-----tg~~~~l~~~~~---------~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~ 409 (715)
++.+ ++....+...||.++.. ......+..... .+....|+++++.|+.... -..|.+.++
T Consensus 206 ~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~vwd~ 280 (342)
T 1yfq_A 206 QEGY-ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS----DGIISCWNL 280 (342)
T ss_dssp GCEE-EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET----TSCEEEEET
T ss_pred CCEE-EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC----CceEEEEcC
Confidence 8855 45555666677766654 133334433321 3444567888776654432 224667776
Q ss_pred ccc
Q 005093 410 VDK 412 (715)
Q Consensus 410 ~~~ 412 (715)
.++
T Consensus 281 ~~~ 283 (342)
T 1yfq_A 281 QTR 283 (342)
T ss_dssp TTT
T ss_pred ccH
Confidence 543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-08 Score=105.28 Aligned_cols=213 Identities=15% Similarity=0.097 Sum_probs=121.5
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
+...+|||||++||.....+ ...+| .+++....+. +..+ .+..+.|+|||++|+..+.
T Consensus 126 v~~v~~s~dg~~l~s~~~d~-----~i~iwd~~~~~~~~~~~---~h~~------~v~~~~~~p~~~~l~s~s~------ 185 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDR-----LIRIWDIENRKIVMILQ---GHEQ------DIYSLDYFPSGDKLVSGSG------ 185 (393)
T ss_dssp EEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC---CCSS------CEEEEEECTTSSEEEEEET------
T ss_pred EEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEEEc---cCCC------CEEEEEEcCCCCEEEEecC------
Confidence 67899999999998765542 34455 3443333322 1111 2278999999998876532
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEec-CCCCCccE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGLHQY 201 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~sp-dg~~~~~~ 201 (715)
...|.+||+.+++.... ......+..+.|+| ||+.
T Consensus 186 --------------------------------------d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~---- 221 (393)
T 1erj_A 186 --------------------------------------DRTVRIWDLRTGQCSLT--LSIEDGVTTVAVSPGDGKY---- 221 (393)
T ss_dssp --------------------------------------TSEEEEEETTTTEEEEE--EECSSCEEEEEECSTTCCE----
T ss_pred --------------------------------------CCcEEEEECCCCeeEEE--EEcCCCcEEEEEECCCCCE----
Confidence 26699999998876543 22334567889999 7775
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eec-------CCCCccccceeEcCCCC
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL-------TESISSAFFPRFSPDGK 273 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l-------t~~~~~~~~~~~spdg~ 273 (715)
|+..+ .+..|.++|+ .++.. ..+ ......+...+|+|||+
T Consensus 222 l~~~s---------------~d~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 222 IAAGS---------------LDRAVRVWDS-----------------ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp EEEEE---------------TTSCEEEEET-----------------TTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred EEEEc---------------CCCcEEEEEC-----------------CCCcEEEeecccccCCCCCCCCEEEEEECCCCC
Confidence 55443 2235677776 33332 223 33445678899999999
Q ss_pred eEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee
Q 005093 274 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 353 (715)
Q Consensus 274 ~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~ 353 (715)
.|+-.+.+. .|.++|+.+................. .+.+ +...+..++|+++++.| ++...
T Consensus 270 ~l~s~s~d~-----------~v~~wd~~~~~~~~~~~~~~~~~~~~------~~~~-h~~~v~~~~~~~~~~~l-~sgs~ 330 (393)
T 1erj_A 270 SVVSGSLDR-----------SVKLWNLQNANNKSDSKTPNSGTCEV------TYIG-HKDFVLSVATTQNDEYI-LSGSK 330 (393)
T ss_dssp EEEEEETTS-----------EEEEEEC---------------CEEE------EEEC-CSSCEEEEEECGGGCEE-EEEET
T ss_pred EEEEEeCCC-----------EEEEEECCCCCCcccccCCCCCcceE------EEec-ccCcEEEEEECCCCCEE-EEEeC
Confidence 887666542 47788876543211100000000000 0000 11134467799999855 44444
Q ss_pred CCeeEEEEEECCCCcEEEecC
Q 005093 354 GSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 354 ~~~~~l~~~d~~tg~~~~l~~ 374 (715)
++ .+..+|+.+++......
T Consensus 331 D~--~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 331 DR--GVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp TS--EEEEEETTTCCEEEEEE
T ss_pred CC--eEEEEECCCCeEEEEEC
Confidence 44 56667888887655443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-08 Score=105.51 Aligned_cols=206 Identities=10% Similarity=0.036 Sum_probs=127.6
Q ss_pred ccceEEeeCCCC-ceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecC-CCCeEEEEeecC
Q 005093 43 TGASAVVPSPSG-SKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEP 118 (715)
Q Consensus 43 ~~~~~~~~Spdg-~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSp-Dg~~la~~~~~~ 118 (715)
+.+...+||||| +.||.....+ ...+| .+++........ +..+ .+..+.|+| |++.|+..+.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~-~h~~------~v~~~~~~~~~~~~l~s~~~-- 139 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGG-----DIILWDYDVQNKTSFIQGM-GPGD------AITGMKFNQFNTNQLFVSSI-- 139 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTS-----CEEEEETTSTTCEEEECCC-STTC------BEEEEEEETTEEEEEEEEET--
T ss_pred CCEEEEEECCCCCCEEEEEcCCC-----eEEEEeCCCcccceeeecC-CcCC------ceeEEEeCCCCCCEEEEEeC--
Confidence 668999999999 7777665542 24455 344444444321 1112 237999999 5666655422
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCC-CCCccceEEEecCCCC
Q 005093 119 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEG 197 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~~~~~~~~~~spdg~~ 197 (715)
...|.+||+.++....+.... ....+..++|+||++.
T Consensus 140 ------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 177 (383)
T 3ei3_B 140 ------------------------------------------RGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQM 177 (383)
T ss_dssp ------------------------------------------TTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTE
T ss_pred ------------------------------------------CCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCE
Confidence 266999999987766663111 1245778999999997
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEE
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~ 277 (715)
|+... .+..|.++|+ .+.....+......+....|+|+|+.+++
T Consensus 178 ----l~~~~---------------~d~~i~i~d~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 178 ----LATGD---------------STGRLLLLGL-----------------DGHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp ----EEEEE---------------TTSEEEEEET-----------------TSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred ----EEEEC---------------CCCCEEEEEC-----------------CCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 66554 3347888886 55666677777778899999999994444
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCcccc-CCCEEEEEeeeCCe
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIWGSS 356 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-dg~~l~~~~~~~~~ 356 (715)
+...+ ..|.++|+.+.+.... ..... . +...+..+.|+| ||+.|+. ...++
T Consensus 222 s~~~d----------~~i~iwd~~~~~~~~~------~~~~~--~--------~~~~v~~~~~s~~~~~~l~~-~~~d~- 273 (383)
T 3ei3_B 222 TSSVD----------ATVKLWDLRNIKDKNS------YIAEM--P--------HEKPVNAAYFNPTDSTKLLT-TDQRN- 273 (383)
T ss_dssp EEETT----------SEEEEEEGGGCCSTTC------EEEEE--E--------CSSCEEEEEECTTTSCEEEE-EESSS-
T ss_pred EEeCC----------CEEEEEeCCCCCcccc------eEEEe--c--------CCCceEEEEEcCCCCCEEEE-EcCCC-
Confidence 44332 2488888876432110 00000 0 112345678999 9986654 44333
Q ss_pred eEEEEEECCCCcE
Q 005093 357 QVIISVNVSSGEL 369 (715)
Q Consensus 357 ~~l~~~d~~tg~~ 369 (715)
.|..+|+.+++.
T Consensus 274 -~i~iwd~~~~~~ 285 (383)
T 3ei3_B 274 -EIRVYSSYDWSK 285 (383)
T ss_dssp -EEEEEETTBTTS
T ss_pred -cEEEEECCCCcc
Confidence 566678776653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-08 Score=102.85 Aligned_cols=255 Identities=11% Similarity=0.130 Sum_probs=144.2
Q ss_pred cceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEe-cCccc
Q 005093 13 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQTV 89 (715)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~ 89 (715)
..+..|.++++........ .....+..+...+...+|||||++|+-....+ ...+| ..++..+... ....
T Consensus 37 s~D~~v~~W~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~-----~v~~wd~~~~~~~~~~~~h~~~- 109 (319)
T 3frx_A 37 SRDKTLISWKLTGDDQKFG-VPVRSFKGHSHIVQDCTLTADGAYALSASWDK-----TLRLWDVATGETYQRFVGHKSD- 109 (319)
T ss_dssp ETTSEEEEEEEEEETTEEE-EEEEEEECCSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSC-
T ss_pred cCCccEEEecCCCCCcccc-ccceEEeCCcccEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCCeeEEEccCCCc-
Confidence 3445566666665432110 00011223346688899999999998765543 45566 3444333322 1222
Q ss_pred cccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEc
Q 005093 90 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 169 (715)
Q Consensus 90 ~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 169 (715)
+..+.|+|+++.|+..+.+ ..|.+||+
T Consensus 110 ---------v~~~~~~~~~~~l~s~s~D--------------------------------------------~~i~vwd~ 136 (319)
T 3frx_A 110 ---------VMSVDIDKKASMIISGSRD--------------------------------------------KTIKVWTI 136 (319)
T ss_dssp ---------EEEEEECTTSCEEEEEETT--------------------------------------------SCEEEEET
T ss_pred ---------EEEEEEcCCCCEEEEEeCC--------------------------------------------CeEEEEEC
Confidence 2789999999988775332 56899999
Q ss_pred cCCceEeecCCCCCCccceEEEecCCCCCcc-EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCC
Q 005093 170 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ-YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 248 (715)
Q Consensus 170 ~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~-~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (715)
++.....+ ......+..+.|+|+++.... .+++++. .+..|..+|+
T Consensus 137 ~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~l~s~~--------------~d~~i~~wd~----------------- 183 (319)
T 3frx_A 137 KGQCLATL--LGHNDWVSQVRVVPNEKADDDSVTIISAG--------------NDKMVKAWNL----------------- 183 (319)
T ss_dssp TSCEEEEE--CCCSSCEEEEEECCC------CCEEEEEE--------------TTSCEEEEET-----------------
T ss_pred CCCeEEEE--eccCCcEEEEEEccCCCCCCCccEEEEEe--------------CCCEEEEEEC-----------------
Confidence 87777666 334445677889885431000 0333332 2235777786
Q ss_pred CCCC-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCc
Q 005093 249 EDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCF 327 (715)
Q Consensus 249 ~~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~ 327 (715)
...+ ...+..+...+...+|||||+.|+-.+.+. .|.++|+.+++........
T Consensus 184 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~--------------- 237 (319)
T 3frx_A 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG-----------EIMLWNLAAKKAMYTLSAQ--------------- 237 (319)
T ss_dssp TTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC-----------EEEEEETTTTEEEEEEECC---------------
T ss_pred CcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC-----------eEEEEECCCCcEEEEecCC---------------
Confidence 3333 345566667788999999999888766552 4888898775431110000
Q ss_pred cccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCC--------CCceeEEEeecCCEEEEEE
Q 005093 328 PGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAE--------SNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 328 ~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~--------~~~~~~~~s~~~~~l~~~~ 395 (715)
..+..++|+||+..++.. . .....+| +++++.... +.... .......|+++|+.|+...
T Consensus 238 -----~~v~~~~~sp~~~~la~~-~-~~~i~v~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 238 -----DEVFSLAFSPNRYWLAAA-T-ATGIKVF--SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp -----SCEEEEEECSSSSEEEEE-E-TTEEEEE--EETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred -----CcEEEEEEcCCCCEEEEE-c-CCCcEEE--EeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 123467899999865443 3 2333444 444444332 22111 1122357888888776443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-08 Score=103.73 Aligned_cols=235 Identities=12% Similarity=0.114 Sum_probs=137.0
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCC--CCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpD--g~~la~~~~~~~~ 120 (715)
+.+...+|||||++||..... +.-.+|.+. .+....+..+. ...+ .+..+.|+|+ ++.|+..+.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d--g~i~iw~~~-~~~~~~~~~~~-~h~~------~v~~~~~~~~~~~~~l~s~~~---- 77 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSD--KTIKIFEVE-GETHKLIDTLT-GHEG------PVWRVDWAHPKFGTILASCSY---- 77 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETT--SCEEEEEEE-TTEEEEEEEEC-CCSS------CEEEEEECCGGGCSEEEEEET----
T ss_pred ccEEEEEEcCCCCEEEEEECC--CcEEEEecC-CCcceeeeEec-CCCC------cEEEEEeCCCCCCCEEEEecc----
Confidence 678999999999999877554 333344433 22222222221 1111 2378999988 887776532
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec-CCCCCCccceEEEecC--CCC
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPL--NEG 197 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~-~~~~~~~~~~~~~spd--g~~ 197 (715)
...|.+||+.+++...+. -......+..+.|+|+ ++.
T Consensus 78 ----------------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 117 (379)
T 3jrp_A 78 ----------------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL 117 (379)
T ss_dssp ----------------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE
T ss_pred ----------------------------------------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCE
Confidence 256999999998632221 0334456888999999 775
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC---CceecCCCCccccceeEcC----
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSP---- 270 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~~~~sp---- 270 (715)
|+... .+..|.++|+ ..+ ....+......+..+.|+|
T Consensus 118 ----l~~~~---------------~d~~i~v~d~-----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 118 ----LLVAS---------------SDGKVSVVEF-----------------KENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp ----EEEEE---------------TTSEEEEEEC-----------------CTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred ----EEEec---------------CCCcEEEEec-----------------CCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 55554 2336778886 333 2334445566788999999
Q ss_pred ---------CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccc
Q 005093 271 ---------DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341 (715)
Q Consensus 271 ---------dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 341 (715)
|++.|+..+.+. .|+++|+.++.... ....... .+...+..+.|+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~------~~~~~~~---------~h~~~v~~~~~s 215 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADN-----------LVKIWKYNSDAQTY------VLESTLE---------GHSDWVRDVAWS 215 (379)
T ss_dssp --------CTTCEEEEEETTS-----------CEEEEEEETTTTEE------EEEEEEC---------CCSSCEEEEEEC
T ss_pred ccccccCCCCCCEEEEEeCCC-----------eEEEEEecCCCcce------eeEEEEe---------cccCcEeEEEEC
Confidence 688887776553 47888876644210 0000000 011234567899
Q ss_pred cC---CCEEEEEeeeCCeeEEEEEECCCCc---EEEecC---CCCCceeEEEeecCCEEEEEEe
Q 005093 342 SD---GCTMLLSSIWGSSQVIISVNVSSGE---LLRITP---AESNFSWSLLTLDGDNIIAVSS 396 (715)
Q Consensus 342 ~d---g~~l~~~~~~~~~~~l~~~d~~tg~---~~~l~~---~~~~~~~~~~s~~~~~l~~~~~ 396 (715)
|+ ++ ++++...++...+| |+.++. ...+.. ....+....|++++..|+....
T Consensus 216 p~~~~~~-~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 216 PTVLLRS-YLASVSQDRTCIIW--TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp CCCSSSE-EEEEEETTSCEEEE--EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred CCCCCCC-eEEEEeCCCEEEEE--eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 99 55 55666656655555 555553 333322 2223444578888887665543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.03 E-value=7.6e-08 Score=96.87 Aligned_cols=242 Identities=12% Similarity=0.080 Sum_probs=141.2
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 123 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 123 (715)
...|.|+|+++.|+++... ...++.++ .+++. .....+..+ ..+.++|||+ |++. .
T Consensus 15 ~Egp~w~~~~~~l~~~d~~---~~~i~~~d~~~~~~-~~~~~~~~~----------~~i~~~~dG~-l~v~-~------- 71 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIP---AKKVCRWDSFTKQV-QRVTMDAPV----------SSVALRQSGG-YVAT-I------- 71 (297)
T ss_dssp EEEEEEETTTTEEEEEETT---TTEEEEEETTTCCE-EEEECSSCE----------EEEEEBTTSS-EEEE-E-------
T ss_pred ccCCeEECCCCEEEEEECC---CCEEEEEECCCCcE-EEEeCCCce----------EEEEECCCCC-EEEE-E-------
Confidence 3578999999999887543 34677777 44443 334433333 6899999998 4332 1
Q ss_pred CccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCC---CCCccceEEEecCCCCCcc
Q 005093 124 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---KSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~---~~~~~~~~~~spdg~~~~~ 200 (715)
...|+++|+++++.+.+.... ......++.++|||+
T Consensus 72 -------------------------------------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~---- 110 (297)
T 3g4e_A 72 -------------------------------------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR---- 110 (297)
T ss_dssp -------------------------------------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC----
T ss_pred -------------------------------------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC----
Confidence 145899999998877663111 112356788999997
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEec
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
|++......... . ........||+++. .+....+.........++|||||+.|+++..
T Consensus 111 -l~~~~~~~~~~~-~--~~~~~~~~l~~~d~------------------~g~~~~~~~~~~~pngi~~spdg~~lyv~~~ 168 (297)
T 3g4e_A 111 -YFAGTMAEETAP-A--VLERHQGALYSLFP------------------DHHVKKYFDQVDISNGLDWSLDHKIFYYIDS 168 (297)
T ss_dssp -EEEEEEECCSBT-T--BCCTTCEEEEEECT------------------TSCEEEEEEEESBEEEEEECTTSCEEEEEEG
T ss_pred -EEEecCCccccc-c--cccCCCcEEEEEEC------------------CCCEEEEeeccccccceEEcCCCCEEEEecC
Confidence 565543211000 0 00012347899984 3444444433344577999999999887765
Q ss_pred CCCCCCCCccccceeEeeecC--CCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 005093 281 KSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 358 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~--~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 358 (715)
.. ..|++++++ ++.. +. ..+ +....... ..+..+++.++|+ |++..... ..
T Consensus 169 ~~----------~~i~~~~~d~~~G~~---~~--~~~--~~~~~~~~-------~~p~g~~~d~~G~-lwva~~~~--~~ 221 (297)
T 3g4e_A 169 LS----------YSVDAFDYDLQTGQI---SN--RRS--VYKLEKEE-------QIPDGMCIDAEGK-LWVACYNG--GR 221 (297)
T ss_dssp GG----------TEEEEEEECTTTCCE---EE--EEE--EEECCGGG-------CEEEEEEEBTTSC-EEEEEETT--TE
T ss_pred CC----------CcEEEEeccCCCCcc---cC--cEE--EEECCCCC-------CCCCeeEECCCCC-EEEEEcCC--CE
Confidence 42 358888864 3321 10 000 00000000 0123556788886 66655433 36
Q ss_pred EEEEECCCCcEEEecC-CCCCceeEEEe-ecCCEEEEEEeCCC
Q 005093 359 IISVNVSSGELLRITP-AESNFSWSLLT-LDGDNIIAVSSSPV 399 (715)
Q Consensus 359 l~~~d~~tg~~~~l~~-~~~~~~~~~~s-~~~~~l~~~~~~~~ 399 (715)
|+++|+++|+...... .........|. ++++.|+++.....
T Consensus 222 v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp EEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred EEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence 9999998887654433 32334445677 67788888776543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.9e-09 Score=109.95 Aligned_cols=265 Identities=12% Similarity=0.086 Sum_probs=150.1
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
+.+.+...+|||+++.|+-....+ ...+| ..++..+.... ..+ .+..+.|+|||+.|+..+.+.
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l~~---h~~------~V~~v~~~~~~~~l~sgs~D~ 172 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKG---HTD------SVQDISFDHSGKLLASCSADM 172 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECC---CSS------CEEEEEECTTSSEEEEEETTS
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEec---cCC------cEEEEEEcCCCCEEEEEeCCC
Confidence 345688999999999888765543 34455 44444443321 111 227899999999888776654
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCccc-CCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 119 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
... .|....................+.|.|+ +..+ .......|.+||+.++...... ......+..+.|+|||+.
T Consensus 173 ~i~--iwd~~~~~~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~ 248 (410)
T 1vyh_C 173 TIK--LWDFQGFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTL 248 (410)
T ss_dssp CCC--EEETTSSCEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSE
T ss_pred eEE--EEeCCCCceeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCE
Confidence 433 3332211111111112223334556666 3333 3334578999999988754321 223345677899999986
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCccccceeEcCC-----
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPD----- 271 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spd----- 271 (715)
|+..+ .+..|.++|+ .+++ ...+..+...+....|+|+
T Consensus 249 ----l~s~s---------------~D~~v~vwd~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 292 (410)
T 1vyh_C 249 ----IASCS---------------NDQTVRVWVV-----------------ATKECKAELREHRHVVECISWAPESSYSS 292 (410)
T ss_dssp ----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECCSCGGGG
T ss_pred ----EEEEc---------------CCCeEEEEEC-----------------CCCceeeEecCCCceEEEEEEcCcccccc
Confidence 55544 2235777776 4443 3455556667788899997
Q ss_pred ---------------CCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCC
Q 005093 272 ---------------GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 336 (715)
Q Consensus 272 ---------------g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~ 336 (715)
|+.|+-.+.+ ..|.++|+.++...... .+ +...+.
T Consensus 293 ~~~~~~~~~~~~~~~g~~l~sgs~D-----------~~i~iwd~~~~~~~~~~------------------~~-h~~~v~ 342 (410)
T 1vyh_C 293 ISEATGSETKKSGKPGPFLLSGSRD-----------KTIKMWDVSTGMCLMTL------------------VG-HDNWVR 342 (410)
T ss_dssp GGGCCSCC-------CCEEEEEETT-----------SEEEEEETTTTEEEEEE------------------EC-CSSCEE
T ss_pred hhhhccccccccCCCCCEEEEEeCC-----------CeEEEEECCCCceEEEE------------------EC-CCCcEE
Confidence 4455544433 24888888765431100 00 111344
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcE-EEecCCCCCceeEEEeecCCEEE
Q 005093 337 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNII 392 (715)
Q Consensus 337 ~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~-~~l~~~~~~~~~~~~s~~~~~l~ 392 (715)
.+.|+|+|+.| ++...++ .|..+|+.+++. ..+......+....|++++..|+
T Consensus 343 ~v~~~~~g~~l-~s~s~D~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 396 (410)
T 1vyh_C 343 GVLFHSGGKFI-LSCADDK--TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 396 (410)
T ss_dssp EEEECSSSSCE-EEEETTT--EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred EEEEcCCCCEE-EEEeCCC--eEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEE
Confidence 66799999855 4555455 455557766654 33433333344456777766554
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-09 Score=108.41 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=85.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch-HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchh
Q 005093 464 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 542 (715)
Q Consensus 464 ~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~-~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 542 (715)
.+...++.|.. .+.+..+.||++||..... ...|. .+...|+++||.|+.+|++| +|.... ....+
T Consensus 49 ~L~~~i~~p~~-~~~~~~~pVVLvHG~~~~~-~~~w~~~l~~~L~~~Gy~V~a~DlpG---~G~~~~--------~~~~~ 115 (316)
T 3icv_A 49 VLDAGLTCQGA-SPSSVSKPILLVPGTGTTG-PQSFDSNWIPLSAQLGYTPCWISPPP---FMLNDT--------QVNTE 115 (316)
T ss_dssp HHHHTEEETTB-BTTBCSSEEEEECCTTCCH-HHHHTTTHHHHHHHTTCEEEEECCTT---TTCSCH--------HHHHH
T ss_pred hHhhhEeCCCC-CCCCCCCeEEEECCCCCCc-HHHHHHHHHHHHHHCCCeEEEecCCC---CCCCcH--------HHHHH
Confidence 44555666743 2334556799999954431 13566 78889999999999999998 442211 11356
Q ss_pred hHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC---CCceeEEEecCCcch
Q 005093 543 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 596 (715)
Q Consensus 543 d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~~ 596 (715)
++.+.++.+.+.. ..+++.|+||||||.++.+++..+ +++++.+|+++|...
T Consensus 116 ~la~~I~~l~~~~--g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 116 YMVNAITTLYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp HHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 7778888887763 347899999999999998777765 589999999998764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=113.44 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=106.3
Q ss_pred ceEEEEEEEeecCC-CCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCc-cEEEEecCccc
Q 005093 14 RKKFMLSTVISKEN-ENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQ-LEKEFHVPQTV 89 (715)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~ 89 (715)
....|.++++.+.. .... .+..+.+.+...+|||||++|+.....+ . ..+| ..++ ........ ..
T Consensus 31 ~d~~i~iw~~~~~~~~~~~-----~~~~h~~~v~~~~~s~~~~~l~s~s~d~--~---v~vwd~~~~~~~~~~~~~~-~~ 99 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHAR-----TFSDHDKIVTCVDWAPKSNRIVTCSQDR--N---AYVYEKRPDGTWKQTLVLL-RL 99 (377)
T ss_dssp SSSCBCEEEEETTEEEECC-----CBCCCSSCEEEEEECTTTCCEEEEETTS--S---EEEC------CCCCEEECC-CC
T ss_pred CCCEEEEEEccCCceEEEE-----EEecCCceEEEEEEeCCCCEEEEEeCCC--e---EEEEEcCCCCceeeeeEec-cc
Confidence 34455566676542 1112 2333346789999999999998776542 2 3444 2322 11222211 11
Q ss_pred cccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEc
Q 005093 90 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 169 (715)
Q Consensus 90 ~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 169 (715)
.+ .+..+.|+|||+.|+..+.+ ..|.+||+
T Consensus 100 ~~------~v~~~~~~~~~~~l~~~~~d--------------------------------------------~~i~iwd~ 129 (377)
T 3dwl_C 100 NR------AATFVRWSPNEDKFAVGSGA--------------------------------------------RVISVCYF 129 (377)
T ss_dssp SS------CEEEEECCTTSSCCEEEESS--------------------------------------------SCEEECCC
T ss_pred CC------ceEEEEECCCCCEEEEEecC--------------------------------------------CeEEEEEE
Confidence 11 23799999999998876432 45888898
Q ss_pred cCCc----eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh--hh
Q 005093 170 NSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL--EL 243 (715)
Q Consensus 170 ~~g~----~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~--~~ 243 (715)
++++ ...+. ......+..++|+|||+. |+..+. +..|.++|+.... ..... ..
T Consensus 130 ~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~----l~~~~~---------------d~~i~iwd~~~~~-~~~~~~~~~ 188 (377)
T 3dwl_C 130 EQENDWWVSKHLK-RPLRSTILSLDWHPNNVL----LAAGCA---------------DRKAYVLSAYVRD-VDAKPEASV 188 (377)
T ss_dssp -----CCCCEEEC-SSCCSCEEEEEECTTSSE----EEEEES---------------SSCEEEEEECCSS-CC-CCCSCS
T ss_pred CCcccceeeeEee-cccCCCeEEEEEcCCCCE----EEEEeC---------------CCEEEEEEEEecc-cCCCccccc
Confidence 8876 44552 114456788999999987 666541 2246666641000 00000 00
Q ss_pred hccCCCCCCc-eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 244 KESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 244 ~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
.......++. ..+ .....+..+.|||||+.|+..+.+. .|.++|+.+++.
T Consensus 189 ~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-----------~i~iwd~~~~~~ 239 (377)
T 3dwl_C 189 WGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS-----------SVTIAYPSAPEQ 239 (377)
T ss_dssp SCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT-----------EEC-CEECSTTS
T ss_pred cccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC-----------cEEEEECCCCCC
Confidence 0000001111 222 4455688899999999998777552 478888877553
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-08 Score=103.20 Aligned_cols=240 Identities=10% Similarity=0.089 Sum_probs=133.4
Q ss_pred ceEEEEEEEeecCCC-CccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCcccccc
Q 005093 14 RKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGS 92 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (715)
....|+++|+.+... ....+. ...+.+...+|||||+.|+..... +.-.+|.+ ..++......... ...
T Consensus 28 ~d~~v~i~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~-~~~~~~~~~~~~~-~~~- 97 (372)
T 1k8k_C 28 NNHEVHIYEKSGNKWVQVHELK-----EHNGQVTGVDWAPDSNRIVTCGTD--RNAYVWTL-KGRTWKPTLVILR-INR- 97 (372)
T ss_dssp SSSEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEEETTTTEEEEEETT--SCEEEEEE-ETTEEEEEEECCC-CSS-
T ss_pred CCCEEEEEeCCCCcEEeeeeec-----CCCCcccEEEEeCCCCEEEEEcCC--CeEEEEEC-CCCeeeeeEEeec-CCC-
Confidence 445677777766531 112222 223678999999999999877654 33233333 3444333332211 111
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 172 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 172 (715)
.+..+.|+|||+.|+....+ ..|.+||++++
T Consensus 98 -----~v~~~~~~~~~~~l~~~~~d--------------------------------------------~~v~i~d~~~~ 128 (372)
T 1k8k_C 98 -----AARCVRWAPNEKKFAVGSGS--------------------------------------------RVISICYFEQE 128 (372)
T ss_dssp -----CEEEEEECTTSSEEEEEETT--------------------------------------------SSEEEEEEETT
T ss_pred -----ceeEEEECCCCCEEEEEeCC--------------------------------------------CEEEEEEecCC
Confidence 23789999999988876422 55888888877
Q ss_pred ce----EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh-hhhhhhcc-
Q 005093 173 EV----QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA-SELELKES- 246 (715)
Q Consensus 173 ~~----~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~- 246 (715)
+. ..+. ......+..+.|+||++. |+... .+..|.++|+....... ........
T Consensus 129 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~---------------~dg~i~~~d~~~~~~~~~~~~~~~~~~ 188 (372)
T 1k8k_C 129 NDWWVCKHIK-KPIRSTVLSLDWHPNSVL----LAAGS---------------CDFKCRIFSAYIKEVEERPAPTPWGSK 188 (372)
T ss_dssp TTEEEEEEEC-TTCCSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEECCCTTTSCCCCCBTTBSC
T ss_pred Ccceeeeeee-cccCCCeeEEEEcCCCCE----EEEEc---------------CCCCEEEEEcccccccccccccccccc
Confidence 62 2331 223446788999999986 66554 22356677741000000 00000000
Q ss_pred CCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCC
Q 005093 247 SSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC 326 (715)
Q Consensus 247 ~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~ 326 (715)
.........+......+..+.|+|||+.|+..+.+. .|.++|+.+++..... ..
T Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~----------~~----- 242 (372)
T 1k8k_C 189 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-----------TVCLADADKKMAVATL----------AS----- 242 (372)
T ss_dssp CCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-----------EEEEEEGGGTTEEEEE----------EC-----
T ss_pred cchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC-----------EEEEEECCCCceeEEE----------cc-----
Confidence 001223344445566788999999999888776542 4888888765431110 00
Q ss_pred ccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 005093 327 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 364 (715)
Q Consensus 327 ~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~ 364 (715)
....+..+.|+|+++ +++.. .++...+|.++.
T Consensus 243 ----~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 243 ----ETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ----SSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred ----CCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccC
Confidence 011245677999997 44444 555566766654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.02 E-value=9.3e-08 Score=97.90 Aligned_cols=260 Identities=13% Similarity=0.085 Sum_probs=147.6
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEec-CccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
.....++|+|||+ |+++... ...++.++ .+++...+... ... +..+.|+|||+ |++......
T Consensus 45 ~~~~~~~~~~~g~-l~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~----------~~~i~~~~dg~-l~v~~~~~~- 108 (333)
T 2dg1_A 45 LQLEGLNFDRQGQ-LFLLDVF---EGNIFKINPETKEIKRPFVSHKAN----------PAAIKIHKDGR-LFVCYLGDF- 108 (333)
T ss_dssp CCEEEEEECTTSC-EEEEETT---TCEEEEECTTTCCEEEEEECSSSS----------EEEEEECTTSC-EEEEECTTS-
T ss_pred ccccCcEECCCCC-EEEEECC---CCEEEEEeCCCCcEEEEeeCCCCC----------cceEEECCCCc-EEEEeCCCC-
Confidence 3457889999998 5555332 23677776 56665555422 122 26899999997 444322110
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEee-cCCCCCCccceEEEecCCCCCc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l-~~~~~~~~~~~~~~spdg~~~~ 199 (715)
. ....|+++|+++++.+.+ ...........+.++|||+
T Consensus 109 ---------------------------------~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~--- 147 (333)
T 2dg1_A 109 ---------------------------------K-----STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG--- 147 (333)
T ss_dssp ---------------------------------S-----SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC---
T ss_pred ---------------------------------C-----CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC---
Confidence 0 125799999998887633 1111223466789999996
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEe
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~ 279 (715)
+++....... ......||+++. ++++.+.+.........++|+|||+.|++..
T Consensus 148 --l~v~~~~~~~--------~~~~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~ 200 (333)
T 2dg1_A 148 --FYFTDFRGYS--------TNPLGGVYYVSP-----------------DFRTVTPIIQNISVANGIALSTDEKVLWVTE 200 (333)
T ss_dssp --EEEEECCCBT--------TBCCEEEEEECT-----------------TSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred --EEEEeccccc--------cCCCceEEEEeC-----------------CCCEEEEeecCCCcccceEECCCCCEEEEEe
Confidence 6655421100 012347999986 5666666544333467789999999887765
Q ss_pred cCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 005093 280 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359 (715)
Q Consensus 280 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l 359 (715)
... ..|+++++.+.+.. +..-..... .... ... .+..++++++|+ +++..... ..|
T Consensus 201 ~~~----------~~i~~~d~~~~g~~-~~~~~~~~~--~~~~-~~~-------~~~~i~~d~~G~-l~v~~~~~--~~v 256 (333)
T 2dg1_A 201 TTA----------NRLHRIALEDDGVT-IQPFGATIP--YYFT-GHE-------GPDSCCIDSDDN-LYVAMYGQ--GRV 256 (333)
T ss_dssp GGG----------TEEEEEEECTTSSS-EEEEEEEEE--EECC-SSS-------EEEEEEEBTTCC-EEEEEETT--TEE
T ss_pred CCC----------CeEEEEEecCCCcC-cccccceEE--EecC-CCC-------CCCceEECCCCC-EEEEEcCC--CEE
Confidence 432 35889988642211 100000000 0000 000 123467888887 65554322 478
Q ss_pred EEEECCCCcEEEecCCCC------CceeEEEeecCCEEEEEEeCCC--CCCeEEEEeec
Q 005093 360 ISVNVSSGELLRITPAES------NFSWSLLTLDGDNIIAVSSSPV--DVPQVKYGYFV 410 (715)
Q Consensus 360 ~~~d~~tg~~~~l~~~~~------~~~~~~~s~~~~~l~~~~~~~~--~p~~l~~~~~~ 410 (715)
+++|+++.....+..... ......++++++.|++...... ....||++++.
T Consensus 257 ~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 257 LVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 888986555555543321 2344567788888887766532 34467877754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-08 Score=105.63 Aligned_cols=254 Identities=11% Similarity=0.066 Sum_probs=136.3
Q ss_pred ceEEEEEEEeecCCCCc-cccccCCCccccccceEEeeCCC----C---ceEEEEecCCCCCCeEEEEecCCcc----EE
Q 005093 14 RKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPS----G---SKLLVVRNPENESPIQFELWSQSQL----EK 81 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Spd----g---~~la~~~~~~~~~~~~~~~~~~~~~----~~ 81 (715)
....|+++++....... ..+ ...+......+...+|+|+ | +.|+..... +.-.+|.+..+... ..
T Consensus 34 ~dg~i~iw~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d--g~i~iw~~~~~~~~~~~~~~ 110 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDNENPKDK-SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS--GDLLFYRITREDETKKVIFE 110 (397)
T ss_dssp TTSEEEEEESBCCTTCCGGGG-EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT--SCEEEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEECCCcccccCCCc-ceEEecCCCcEEEEEEecccccCCccccEEEEEcCC--CCEEEEEccCCcccccccce
Confidence 44566676676654110 000 0112223366899999999 9 888876554 33334444333221 22
Q ss_pred EEecCccc--cccccCCCcccceeec----CCCCe-EEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCc
Q 005093 82 EFHVPQTV--HGSVYADGWFEGISWN----SDETL-IAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 154 (715)
Q Consensus 82 ~~~~~~~~--~~~~~~~~~~~~~~wS----pDg~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 154 (715)
........ .+ .+..+.|+ |||+. |+..+.
T Consensus 111 ~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~l~~~~~-------------------------------------- 146 (397)
T 1sq9_A 111 KLDLLDSDMKKH------SFWALKWGASNDRLLSHRLVATDV-------------------------------------- 146 (397)
T ss_dssp EECCSCTTGGGS------CEEEEEEECCC----CEEEEEEET--------------------------------------
T ss_pred eecccccccCCC------cEEEEEEeeccCCCCceEEEEEeC--------------------------------------
Confidence 22111000 12 23799999 99998 666432
Q ss_pred ccCCccCceEEEEEccC------CceE------eecC-----CCCCCccceEEEecCCCCCccEEEEEeecCccceeeee
Q 005093 155 TYAGKRQPSLFVININS------GEVQ------AVKG-----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 217 (715)
Q Consensus 155 ~~~~~~~~~l~~~~~~~------g~~~------~l~~-----~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~ 217 (715)
...|++||+.+ ++.. .+.+ ......+..+.|+|+| . ++...
T Consensus 147 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~----l~~~~----------- 204 (397)
T 1sq9_A 147 ------KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L----IATGF----------- 204 (397)
T ss_dssp ------TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E----EEEEC-----------
T ss_pred ------CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e----EEEEe-----------
Confidence 15588888877 4332 2210 1123457789999999 8 88765
Q ss_pred eeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCC---C---CccccceeEcCCCCeEEEEecCCCCCCCCcc
Q 005093 218 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE---S---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 290 (715)
Q Consensus 218 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~---~---~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~ 290 (715)
.+..|.++|+ .+++. ..+.. . ...+....|+|||+.|+..+.+.
T Consensus 205 ----~dg~i~i~d~-----------------~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-------- 255 (397)
T 1sq9_A 205 ----NNGTVQISEL-----------------STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-------- 255 (397)
T ss_dssp ----TTSEEEEEET-----------------TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--------
T ss_pred ----CCCcEEEEEC-----------------CCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC--------
Confidence 2346888887 44433 34444 3 66788999999999888666541
Q ss_pred ccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 005093 291 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 370 (715)
Q Consensus 291 ~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 370 (715)
....|.++|+.+++............... . ..+ .+...+..+.|+|+++.|+ +...++ .|..+|+.+++..
T Consensus 256 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~-~---~~~--~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 256 SFGCITLYETEFGERIGSLSVPTHSSQAS-L---GEF--AHSSWVMSLSFNDSGETLC-SAGWDG--KLRFWDVKTKERI 326 (397)
T ss_dssp TEEEEEEEETTTCCEEEEECBC------------CCB--SBSSCEEEEEECSSSSEEE-EEETTS--EEEEEETTTTEEE
T ss_pred CCceEEEEECCCCcccceeccCccccccc-c---ccc--ccCCcEEEEEECCCCCEEE-EEeCCC--eEEEEEcCCCcee
Confidence 11358889987754321110000000000 0 000 0112345678999998554 444343 6677788888766
Q ss_pred EecC
Q 005093 371 RITP 374 (715)
Q Consensus 371 ~l~~ 374 (715)
....
T Consensus 327 ~~~~ 330 (397)
T 1sq9_A 327 TTLN 330 (397)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5444
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.5e-08 Score=103.30 Aligned_cols=237 Identities=12% Similarity=0.102 Sum_probs=146.4
Q ss_pred EEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 47 AVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 47 ~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
...||+ ..++.....+ . ..+| .+++...+..... . +.+..+.|+|||+.|+..+.
T Consensus 98 ~~~~s~--~~l~~~~~d~----~-v~lw~~~~~~~~~~~~~~~--~------~~v~~v~~s~~~~~l~~~~~-------- 154 (401)
T 4aez_A 98 LLDWSN--LNVVAVALER----N-VYVWNADSGSVSALAETDE--S------TYVASVKWSHDGSFLSVGLG-------- 154 (401)
T ss_dssp CEEECT--TSEEEEEETT----E-EEEEETTTCCEEEEEECCT--T------CCEEEEEECTTSSEEEEEET--------
T ss_pred EEeecC--CCEEEEECCC----e-EEEeeCCCCcEeEeeecCC--C------CCEEEEEECCCCCEEEEECC--------
Confidence 356665 4455554332 3 3455 5566655554321 1 12379999999999888543
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEE
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 204 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~ 204 (715)
...|.+||+++++..... ......+..+.| +++. ++
T Consensus 155 ------------------------------------dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~- 190 (401)
T 4aez_A 155 ------------------------------------NGLVDIYDVESQTKLRTM-AGHQARVGCLSW--NRHV----LS- 190 (401)
T ss_dssp ------------------------------------TSCEEEEETTTCCEEEEE-CCCSSCEEEEEE--ETTE----EE-
T ss_pred ------------------------------------CCeEEEEECcCCeEEEEe-cCCCCceEEEEE--CCCE----EE-
Confidence 256899999887754431 233445667778 4444 44
Q ss_pred EeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCC
Q 005093 205 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSV 284 (715)
Q Consensus 205 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~ 284 (715)
++. .+..|..+|+. ........+......+....|+|||+.|+..+.+.
T Consensus 191 ~~~--------------~dg~i~i~d~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-- 239 (401)
T 4aez_A 191 SGS--------------RSGAIHHHDVR---------------IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN-- 239 (401)
T ss_dssp EEE--------------TTSEEEEEETT---------------SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred EEc--------------CCCCEEEEecc---------------cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC--
Confidence 442 23468888861 02233455666677889999999999888777553
Q ss_pred CCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 005093 285 DSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 364 (715)
Q Consensus 285 ~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~ 364 (715)
.|.++|+.++....... .+...+..+.|+|++..++++........|..+|+
T Consensus 240 ---------~v~iwd~~~~~~~~~~~-------------------~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 240 ---------VVQIWDARSSIPKFTKT-------------------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp ---------CEEEEETTCSSEEEEEC-------------------CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred ---------eEEEccCCCCCccEEec-------------------CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence 48888987744311100 01124567789999887877665323457888899
Q ss_pred CCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 365 SSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 365 ~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
.+++..........+....|++++..++.+....+ ..|.+.++.+
T Consensus 292 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d--g~i~v~~~~~ 336 (401)
T 4aez_A 292 ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD--NNLSIWSYSS 336 (401)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTT--CEEEEEEEET
T ss_pred CCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCC--CcEEEEecCC
Confidence 88887766555554556688888888776653332 3466666544
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-10 Score=127.11 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=87.1
Q ss_pred CCCCceEEEEEEecCCCC-CCCCCcEEEEEcCCCCCCCCccc-------hHHHHHHH-hCCcEEEEEcCCCCC-CCchhh
Q 005093 459 KGAQKPFEAIFVSSSHKK-DCSCDPLIVVLHGGPHSVSLSSY-------SKSLAFLS-SVGYSLLIVNYRGSL-GFGEEA 528 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~-~~~~~P~vv~iHGg~~~~~~~~~-------~~~~~~la-~~G~~vi~~d~rG~~-~~g~~~ 528 (715)
+.|.+.+ .+|.|.... ..++.|+||++|||++..+.... ......|+ +.|++|+.+|||... ++....
T Consensus 77 sedcl~l--nv~~P~~~~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~~~ 154 (579)
T 2bce_A 77 NEDCLYL--NIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTG 154 (579)
T ss_dssp CSCCCEE--EEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCS
T ss_pred CCCCCEE--EEEECCCCCCCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCcCC
Confidence 4455555 578887542 34678999999998865433210 11123444 457999999999421 221111
Q ss_pred hhcCCCCCCccchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhh--CCCceeEEEecCCc
Q 005093 529 LQSLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 594 (715)
Q Consensus 529 ~~~~~~~~~~~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~ 594 (715)
....+ +...+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++.. ...+|+++|+.++.
T Consensus 155 ~~~~p---gn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 155 DSNLP---GNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp STTCC---CCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred CCCCC---CccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 11112 222478999999999885 24799999999999999999887764 34689999998874
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.2e-08 Score=97.48 Aligned_cols=253 Identities=9% Similarity=0.019 Sum_probs=144.4
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
.....|+|+|||+.|+|+...+ ..++.+..+|+...+....... .++.|+|||+ |+.. +.
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~---~~i~~~~~~g~~~~~~~~~~~~----------~gl~~d~dG~-l~v~-~~----- 104 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVG---RRVLGWREDGTVDVLLDATAFT----------NGNAVDAQQR-LVHC-EH----- 104 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTT---TEEEEEETTSCEEEEEESCSCE----------EEEEECTTSC-EEEE-ET-----
T ss_pred cCccCCeEeCCCCEEEEEECCC---CEEEEEeCCCCEEEEeCCCCcc----------ceeeECCCCC-EEEE-EC-----
Confidence 3456799999999998886543 3566666555544433322222 6899999998 4332 21
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCC---CCccceEEEecCCCCCc
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~~~~~spdg~~~~ 199 (715)
....|++++.+ |+.+.+..... ......+.++|||+
T Consensus 105 -------------------------------------~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--- 143 (305)
T 3dr2_A 105 -------------------------------------GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--- 143 (305)
T ss_dssp -------------------------------------TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC---
T ss_pred -------------------------------------CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC---
Confidence 11457788876 55554421111 11345789999997
Q ss_pred cEEEEEeecCcc--ceeeeeee-ecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEE
Q 005093 200 QYLVFVGWSSET--RKLGIKYC-YNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 200 ~~i~~~~~~~~~--~~~g~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~ 276 (715)
|+++....+. ...+.... ......||++|. ++++.+.+. .......++|||||+.|+
T Consensus 144 --l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~-----------------~~g~~~~~~-~~~~p~gl~~spdg~~ly 203 (305)
T 3dr2_A 144 --IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP-----------------DGSPLQRMA-DLDHPNGLAFSPDEQTLY 203 (305)
T ss_dssp --EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS-----------------SSCCCEEEE-EESSEEEEEECTTSSEEE
T ss_pred --EEEeCcCCCccccccccccccccCCCeEEEEcC-----------------CCCcEEEEe-cCCCCcceEEcCCCCEEE
Confidence 6765210000 00000000 011247999996 677777766 444456789999999988
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCe
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 356 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~ 356 (715)
+...... ......|+++++.+++ ++... .... . .. ..+..+.+.++|+ |++.. .
T Consensus 204 v~~~~~~-----~~~~~~i~~~~~~~~~---l~~~~-~~~~---~-~~--------~~pdgi~~d~~G~-lwv~~-~--- 257 (305)
T 3dr2_A 204 VSQTPEQ-----GHGSVEITAFAWRDGA---LHDRR-HFAS---V-PD--------GLPDGFCVDRGGW-LWSSS-G--- 257 (305)
T ss_dssp EEECCC--------CCCEEEEEEEETTE---EEEEE-EEEC---C-SS--------SCCCSEEECTTSC-EEECC-S---
T ss_pred EEecCCc-----CCCCCEEEEEEecCCC---ccCCe-EEEE---C-CC--------CCCCeEEECCCCC-EEEec-C---
Confidence 7765421 0112468999887643 21110 0100 0 00 1234667888998 66554 2
Q ss_pred eEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 005093 357 QVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 408 (715)
Q Consensus 357 ~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~ 408 (715)
..|+++++++.....+..... .....|+++++.|+++..+ .|++++
T Consensus 258 ~gv~~~~~~g~~~~~~~~~~~-~~~~~f~~d~~~L~it~~~-----~l~~~~ 303 (305)
T 3dr2_A 258 TGVCVFDSDGQLLGHIPTPGT-ASNCTFDQAQQRLFITGGP-----CLWMLP 303 (305)
T ss_dssp SEEEEECTTSCEEEEEECSSC-CCEEEECTTSCEEEEEETT-----EEEEEE
T ss_pred CcEEEECCCCCEEEEEECCCc-eeEEEEeCCCCEEEEEcCC-----eEEEEE
Confidence 249999996666666654433 3446777777788776643 566655
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=99.01 E-value=5.3e-10 Score=121.55 Aligned_cols=131 Identities=21% Similarity=0.164 Sum_probs=90.8
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHHh-CCcEEEEEcCCCC-CCCchhhhhcCCCC
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSS-VGYSLLIVNYRGS-LGFGEEALQSLPGK 535 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~-~~~~~~la~-~G~~vi~~d~rG~-~~~g~~~~~~~~~~ 535 (715)
+.|.+.+ .+|.|... .++.|+||++|||++..+.... ......|++ .|++|+.+|||.. -||.... ..+..
T Consensus 89 ~edcl~l--nv~~P~~~--~~~~Pv~v~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~ 162 (529)
T 1p0i_A 89 SEDCLYL--NVWIPAPK--PKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALP--GNPEA 162 (529)
T ss_dssp CSCCCEE--EEEEESSC--CSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCTTS
T ss_pred CCcCCeE--EEeeCCCC--CCCCeEEEEECCCccccCCCCccccChHHHhccCCeEEEEecccccccccccCC--CCCCC
Confidence 3455555 57888743 2678999999998876544322 122345655 7999999999942 1121110 00112
Q ss_pred CCccchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 005093 536 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 595 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~ 595 (715)
.+...+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++... ..+|+++|+.+|..
T Consensus 163 ~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 227 (529)
T 1p0i_A 163 PGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 227 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred cCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCcc
Confidence 2333488999999999886 247999999999999999999887753 35899999999864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-08 Score=113.08 Aligned_cols=241 Identities=10% Similarity=0.040 Sum_probs=144.3
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCC----ccEEEEe-cCccccccccCCCcccceeecC--CCCeEEE
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS----QLEKEFH-VPQTVHGSVYADGWFEGISWNS--DETLIAY 113 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~wSp--Dg~~la~ 113 (715)
+.+...+|||||++||+... + . ..+| .++ +....+. .... .+..+.||| ||++|+.
T Consensus 19 ~~v~~~~~spdg~~l~~~~~---~--~-v~v~~~~~~~~~~~~~~~~~~h~~~---------~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCG---K--S-AFVRCLDDGDSKVPPVVQFTGHGSS---------VVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp TCCCCCEEETTTTEEEEEET---T--E-EEEEECCSSCCSSCSEEEECTTTTS---------CEEEEEECSSTTCCEEEE
T ss_pred CceeEEEECCCCCEEEEecC---C--e-EEEEECCCCCCccccceEEecCCCc---------eEEEEEECcCCCCCEEEE
Confidence 66889999999999999862 2 2 3344 334 3333322 1122 037999999 9998887
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC------ceEeecC-CCCCCcc
Q 005093 114 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG------EVQAVKG-IPKSLSV 186 (715)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g------~~~~l~~-~~~~~~~ 186 (715)
... ...|.+||+.++ +...+.. ......+
T Consensus 84 ~~~--------------------------------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (615)
T 1pgu_A 84 GDE--------------------------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI 119 (615)
T ss_dssp EET--------------------------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE
T ss_pred ecC--------------------------------------------CCEEEEEeCCCCcccccccccccchhhcccccE
Confidence 532 256899999755 2222210 2234467
Q ss_pred ceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccce
Q 005093 187 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFP 266 (715)
Q Consensus 187 ~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~ 266 (715)
..+.|+|||+. |+......+ ....|+.+| .+.....+..+...+...
T Consensus 120 ~~~~~s~~~~~----l~~~~~~~~-----------~~~~v~~~d------------------~~~~~~~~~~~~~~v~~~ 166 (615)
T 1pgu_A 120 SDISWDFEGRR----LCVVGEGRD-----------NFGVFISWD------------------SGNSLGEVSGHSQRINAC 166 (615)
T ss_dssp EEEEECTTSSE----EEEEECCSS-----------CSEEEEETT------------------TCCEEEECCSCSSCEEEE
T ss_pred EEEEEeCCCCE----EEEeccCCC-----------CccEEEEEE------------------CCCcceeeecCCccEEEE
Confidence 88999999998 877663211 113566666 334555666677778999
Q ss_pred eEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccC---CCCCCccccC
Q 005093 267 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS---SILSNPWLSD 343 (715)
Q Consensus 267 ~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~d 343 (715)
.|+|+|+.++++...+ ..|.++|+.+++.... +.. +.. .+..+.|+|+
T Consensus 167 ~~~~~~~~~l~~~~~d----------~~v~vwd~~~~~~~~~----------~~~---------~~~~~~~v~~~~~~~~ 217 (615)
T 1pgu_A 167 HLKQSRPMRSMTVGDD----------GSVVFYQGPPFKFSAS----------DRT---------HHKQGSFVRDVEFSPD 217 (615)
T ss_dssp EECSSSSCEEEEEETT----------TEEEEEETTTBEEEEE----------ECS---------SSCTTCCEEEEEECST
T ss_pred EECCCCCcEEEEEeCC----------CcEEEEeCCCcceeee----------ecc---------cCCCCceEEEEEECCC
Confidence 9999998544444332 2588888766443110 000 011 2446779999
Q ss_pred -CCEEEEEeeeCCeeEEEEEECCCCcEEEec-----CCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 344 -GCTMLLSSIWGSSQVIISVNVSSGELLRIT-----PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 344 -g~~l~~~~~~~~~~~l~~~d~~tg~~~~l~-----~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
++.++. ...++ .|..+|+.+++..... .....+....|+ ++..++....+ ..|.+.++.++
T Consensus 218 ~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~~wd~~~~ 284 (615)
T 1pgu_A 218 SGEFVIT-VGSDR--KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD----ATIRVWDVTTS 284 (615)
T ss_dssp TCCEEEE-EETTC--CEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT----SEEEEEETTTT
T ss_pred CCCEEEE-EeCCC--eEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC----CcEEEEECCCC
Confidence 875544 44333 5677788888876655 333334445667 66666554422 34556665433
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-08 Score=100.81 Aligned_cols=244 Identities=11% Similarity=0.048 Sum_probs=138.7
Q ss_pred ccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEe-cCcc
Q 005093 12 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQT 88 (715)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~ 88 (715)
-.....+.++|+.+... ...+.. ....+...+|+|||++|+.....+ ...+| ..++....+. ....
T Consensus 31 ~~~dg~v~lWd~~~~~~-~~~~~~-----~~~~v~~~~~~~~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~h~~~ 99 (304)
T 2ynn_A 31 TLYSGRVELWNYETQVE-VRSIQV-----TETPVRAGKFIARKNWIIVGSDDF-----RIRVFNYNTGEKVVDFEAHPDY 99 (304)
T ss_dssp EETTSEEEEEETTTTEE-EEEEEC-----CSSCEEEEEEEGGGTEEEEEETTS-----EEEEEETTTCCEEEEEECCSSC
T ss_pred EcCCCcEEEEECCCCce-eEEeec-----cCCcEEEEEEeCCCCEEEEECCCC-----EEEEEECCCCcEEEEEeCCCCc
Confidence 33455666666654431 122221 225578899999999998765543 34556 3444333322 1222
Q ss_pred ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEE
Q 005093 89 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 168 (715)
Q Consensus 89 ~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (715)
+..+.|+||++.|+-.+. ...|.+||
T Consensus 100 ----------v~~~~~~~~~~~l~sgs~--------------------------------------------D~~v~lWd 125 (304)
T 2ynn_A 100 ----------IRSIAVHPTKPYVLSGSD--------------------------------------------DLTVKLWN 125 (304)
T ss_dssp ----------EEEEEECSSSSEEEEEET--------------------------------------------TSCEEEEE
T ss_pred ----------EEEEEEcCCCCEEEEECC--------------------------------------------CCeEEEEE
Confidence 278999999998876432 25699999
Q ss_pred ccCCc-eE-eecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhcc
Q 005093 169 INSGE-VQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 246 (715)
Q Consensus 169 ~~~g~-~~-~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 246 (715)
++++. .. .+ ......+..++|+|++.. ++.++. .+..|.++|+.
T Consensus 126 ~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~----~l~sgs--------------~D~~v~iwd~~-------------- 171 (304)
T 2ynn_A 126 WENNWALEQTF--EGHEHFVMCVAFNPKDPS----TFASGC--------------LDRTVKVWSLG-------------- 171 (304)
T ss_dssp GGGTTEEEEEE--CCCCSCEEEEEECTTCTT----EEEEEE--------------TTSEEEEEETT--------------
T ss_pred CCCCcchhhhh--cccCCcEEEEEECCCCCC----EEEEEe--------------CCCeEEEEECC--------------
Confidence 98774 32 23 233445778999995544 555542 22367777861
Q ss_pred CCCCCCceecC-CCCccccceeEcC--CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecC
Q 005093 247 SSEDLPVVNLT-ESISSAFFPRFSP--DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCA 322 (715)
Q Consensus 247 ~~~~~~~~~lt-~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~ 322 (715)
.......+. ..........|+| |++.|+-.+.+. .|.++|+.+++... +..
T Consensus 172 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-----------~i~iWd~~~~~~~~~~~~------------ 226 (304)
T 2ynn_A 172 --QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-----------TIKIWDYQTKSCVATLEG------------ 226 (304)
T ss_dssp --CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS-----------EEEEEETTTTEEEEEEEC------------
T ss_pred --CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC-----------eEEEEeCCCCccceeeCC------------
Confidence 222223333 2334456677765 777777665542 48888987654211 100
Q ss_pred CCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeEEEeecCCE
Q 005093 323 EGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDN 390 (715)
Q Consensus 323 ~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~~~~~ 390 (715)
+...+..+.|+|++. ++++...++. |..+|+.+++..+..... .......++++++.
T Consensus 227 --------h~~~v~~~~~~p~~~-~l~s~s~Dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 227 --------HMSNVSFAVFHPTLP-IIISGSEDGT--LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (304)
T ss_dssp --------CSSCEEEEEECSSSS-EEEEEETTSC--EEEEETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred --------CCCCEEEEEECCCCC-EEEEEcCCCe--EEEEECCCCceeeeccCCCccEEEEEECCCCCc
Confidence 111344567999998 5556655554 455588888766554332 22233345565543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-08 Score=112.60 Aligned_cols=231 Identities=13% Similarity=0.081 Sum_probs=138.4
Q ss_pred ccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEe-cCcc
Q 005093 12 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQT 88 (715)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~ 88 (715)
-..+..|.++++...... .......+..+...+...+|||||+.|+-....+ ...+| ..++..+.+. ....
T Consensus 401 ~s~D~~i~~W~~~~~~~~-~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg-----~v~vwd~~~~~~~~~~~~h~~~ 474 (694)
T 3dm0_A 401 ASRDKSIILWKLTKDDKA-YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG-----ELRLWDLAAGVSTRRFVGHTKD 474 (694)
T ss_dssp EETTSEEEEEECCCSTTC-SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSC
T ss_pred EeCCCcEEEEEccCCCcc-cccccceecCCCCcEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCcceeEEeCCCCC
Confidence 334556666667654321 1111112333346788999999999998765543 45566 3443333222 2222
Q ss_pred ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEE
Q 005093 89 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 168 (715)
Q Consensus 89 ~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (715)
+ ..+.|||||+.|+..+.+ ..|.+||
T Consensus 475 v----------~~~~~s~~~~~l~s~s~D--------------------------------------------~~i~iwd 500 (694)
T 3dm0_A 475 V----------LSVAFSLDNRQIVSASRD--------------------------------------------RTIKLWN 500 (694)
T ss_dssp E----------EEEEECTTSSCEEEEETT--------------------------------------------SCEEEEC
T ss_pred E----------EEEEEeCCCCEEEEEeCC--------------------------------------------CEEEEEE
Confidence 2 789999999998775432 5588888
Q ss_pred ccCCceEeecC--CCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhcc
Q 005093 169 INSGEVQAVKG--IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 246 (715)
Q Consensus 169 ~~~g~~~~l~~--~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 246 (715)
+.+.....+.. ......+..+.|+|++... ++.++. .+..|.++|+
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---~l~s~s--------------~d~~v~vwd~--------------- 548 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQP---TIVSAS--------------WDKTVKVWNL--------------- 548 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSC---EEEEEE--------------TTSCEEEEET---------------
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcc---eEEEEe--------------CCCeEEEEEC---------------
Confidence 87665544420 1122346788999998420 444442 2236778887
Q ss_pred CCCCCC-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCC
Q 005093 247 SSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 325 (715)
Q Consensus 247 ~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~ 325 (715)
.++. ...+..+...+...+|||||+.|+..+.+. .|.++|+.+++.......
T Consensus 549 --~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg-----------~i~iwd~~~~~~~~~~~~-------------- 601 (694)
T 3dm0_A 549 --SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG-----------VVLLWDLAEGKKLYSLEA-------------- 601 (694)
T ss_dssp --TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----------BCEEEETTTTEEEECCBC--------------
T ss_pred --CCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC-----------eEEEEECCCCceEEEecC--------------
Confidence 4443 445666777889999999999888766553 478888877543111000
Q ss_pred CccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 005093 326 CFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 371 (715)
Q Consensus 326 ~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 371 (715)
...+..++|+|++..+ ....+ + .|..+|+.+++...
T Consensus 602 ------~~~v~~~~~sp~~~~l-~~~~~-~--~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 602 ------NSVIHALCFSPNRYWL-CAATE-H--GIKIWDLESKSIVE 637 (694)
T ss_dssp ------SSCEEEEEECSSSSEE-EEEET-T--EEEEEETTTTEEEE
T ss_pred ------CCcEEEEEEcCCCcEE-EEEcC-C--CEEEEECCCCCChh
Confidence 0123456799998744 33332 2 37778988887654
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=106.40 Aligned_cols=192 Identities=8% Similarity=-0.010 Sum_probs=110.8
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
..|.|+++||.+.. ...|..++..|. .++.|+.+|++| ++. .++++.+.++.+ . ..
T Consensus 21 ~~~~l~~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~g---~~~-------------~~~~~~~~i~~~---~--~~ 76 (244)
T 2cb9_A 21 GGKNLFCFPPISGF--GIYFKDLALQLN-HKAAVYGFHFIE---EDS-------------RIEQYVSRITEI---Q--PE 76 (244)
T ss_dssp CSSEEEEECCTTCC--GGGGHHHHHHTT-TTSEEEEECCCC---STT-------------HHHHHHHHHHHH---C--SS
T ss_pred CCCCEEEECCCCCC--HHHHHHHHHHhC-CCceEEEEcCCC---HHH-------------HHHHHHHHHHHh---C--CC
Confidence 45679999996654 456777777775 689999999998 211 144555554433 1 23
Q ss_pred ceEEEEEeChhHHHHHHHHhhC---CCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCCh-hhH---
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV-EDL--- 632 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 632 (715)
.++.++||||||.+++.++.+. ++++.+++++++...... ...... ......+. .+.. ...
T Consensus 77 ~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~~~~~------~~~~~~-----~~~~~~~~-~~~~~~~~~~~ 144 (244)
T 2cb9_A 77 GPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKKDQS------ITADTE-----NDDSAAYL-PEAVRETVMQK 144 (244)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCCCSC------CCCC------------CCS-CHHHHHHHTHH
T ss_pred CCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCCCccc------cccccc-----HHHHHHHh-HHHHHHHHHHH
Confidence 6799999999999999988765 577888888877542100 000000 00000000 0000 000
Q ss_pred -HHHHhcCc-hhhccCCCCcEEEEeeC--CCCcCCchHHHHHHHHHHHc-CCcEEEEEeCCCCcc-CCCCCchHHHHHHH
Q 005093 633 -TRFHSKSP-ISHISKVKTPTIFLLGA--QDLRVPVSNGLQYARALREK-GVETKVIVFPNDVHG-IERPQSDFESFLNI 706 (715)
Q Consensus 633 -~~~~~~sp-~~~~~~i~~P~Lii~G~--~D~~v~~~~~~~~~~~l~~~-g~~~~~~~~~~~~H~-~~~~~~~~~~~~~i 706 (715)
..+..+.. ......+++|+++++|+ .|.. +... ...+.+. ...++++.+++ +|. +...+....+.+.|
T Consensus 145 ~~~~~~~~~~~~~~~~i~~Pvl~i~g~~~~D~~-~~~~----~~~w~~~~~~~~~~~~i~g-gH~~~~~~~~~~~~~~~i 218 (244)
T 2cb9_A 145 KRCYQEYWAQLINEGRIKSNIHFIEAGIQTETS-GAMV----LQKWQDAAEEGYAEYTGYG-AHKDMLEGEFAEKNANII 218 (244)
T ss_dssp HHHHHHHHHHCCCCSCBSSEEEEEECSBCSCCC-HHHH----TTSSGGGBSSCEEEEECSS-BGGGTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCcCCCEEEEEccCccccc-cccc----hhHHHHhcCCCCEEEEecC-ChHHHcChHHHHHHHHHH
Confidence 00111100 01345788999999999 8873 2221 1222222 23688999997 883 33334455677788
Q ss_pred HHHHHHh
Q 005093 707 GLWFKKY 713 (715)
Q Consensus 707 ~~wl~~~ 713 (715)
.+||.+.
T Consensus 219 ~~~L~~~ 225 (244)
T 2cb9_A 219 LNILDKI 225 (244)
T ss_dssp HHHHHTC
T ss_pred HHHHhcC
Confidence 8888753
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.8e-08 Score=102.68 Aligned_cols=206 Identities=11% Similarity=0.070 Sum_probs=125.6
Q ss_pred ccceEEeeCCC-CceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecC-CCCeEEEEeecC
Q 005093 43 TGASAVVPSPS-GSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEP 118 (715)
Q Consensus 43 ~~~~~~~~Spd-g~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSp-Dg~~la~~~~~~ 118 (715)
..+...+|+|+ ++.||.....+ ...+| ..++...+... .+..+. +..+.|+| |++.|+-.+.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~-~gH~~~------V~~l~f~p~~~~~l~s~s~-- 185 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKG-IGAGGS------ITGLKFNPLNTNQFYASSM-- 185 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTS-----CEEEECSSCCSCCEEECC-CSSSCC------CCEEEECSSCTTEEEEECS--
T ss_pred CCEEEEEEeCCCCCEEEEEeCCC-----EEEEEECCCCCceeEEEc-cCCCCC------EEEEEEeCCCCCEEEEEeC--
Confidence 45889999995 55666554432 34556 33333333322 122222 38999999 5666655422
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC-CCCCCccceEEEecCCCC
Q 005093 119 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~~~~spdg~~ 197 (715)
...|.+||++++..+.+.. ......+..+.|+|||+.
T Consensus 186 ------------------------------------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (435)
T 4e54_B 186 ------------------------------------------EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM 223 (435)
T ss_dssp ------------------------------------------SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTE
T ss_pred ------------------------------------------CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCE
Confidence 2568999999887666531 122334667899999986
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEE
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~ 277 (715)
|+... .+..|.++|+ .+.....+..+...+....|+|+++.++.
T Consensus 224 ----l~~g~---------------~dg~i~~wd~-----------------~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 224 ----VVTGD---------------NVGNVILLNM-----------------DGKELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp ----EEEEC---------------SSSBEEEEES-----------------SSCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred ----EEEEe---------------CCCcEeeecc-----------------CcceeEEEecccceEEeeeecCCCceEEE
Confidence 65543 2236888887 66666667767778899999999987766
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCe
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 356 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~ 356 (715)
+...+ ..|.++|+.+..... +.... .+...+..++|+|||+.| ++...++
T Consensus 268 s~s~d----------~~v~iwd~~~~~~~~~~~~~~-----------------~h~~~v~~~~~spdg~~l-~s~~~D~- 318 (435)
T 4e54_B 268 TASVD----------QTVKIWDLRQVRGKASFLYSL-----------------PHRHPVNAACFSPDGARL-LTTDQKS- 318 (435)
T ss_dssp EEETT----------SBCCEEETTTCCSSSCCSBCC-----------------BCSSCEEECCBCTTSSEE-EEEESSS-
T ss_pred EecCc----------ceeeEEecccccccceEEEee-----------------eccccccceeECCCCCee-EEEcCCC-
Confidence 55443 237778876644321 11000 011235577899999855 4444444
Q ss_pred eEEEEEECCCCcEE
Q 005093 357 QVIISVNVSSGELL 370 (715)
Q Consensus 357 ~~l~~~d~~tg~~~ 370 (715)
.|..+|+.+++..
T Consensus 319 -~i~iwd~~~~~~~ 331 (435)
T 4e54_B 319 -EIRVYSASQWDCP 331 (435)
T ss_dssp -CEEEEESSSSSSE
T ss_pred -EEEEEECCCCccc
Confidence 4555677766543
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=109.01 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=78.1
Q ss_pred CCCcEEEEEcCCCCCCC---CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcC
Q 005093 479 SCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 555 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~---~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~ 555 (715)
++.|.||++||...... ...|....+.|+++||.|+++|++| +|.+. ...+++.+.++.+++.
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~~~~~~~~~~~L~~~G~~v~~~d~~g---~g~s~----------~~~~~~~~~i~~~~~~- 70 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQ---LDTSE----------VRGEQLLQQVEEIVAL- 70 (285)
T ss_dssp CCSSCEEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCS---SSCHH----------HHHHHHHHHHHHHHHH-
T ss_pred CCCCeEEEeCCCCCCccccccccHHHHHHHHHhCCCEEEEEeCCC---CCCch----------hhHHHHHHHHHHHHHH-
Confidence 34677999999655421 2367778889999999999999998 44432 1245566666655554
Q ss_pred CCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 556 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 556 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
.+.+++.|+||||||.++..++.++|++++++|++++..
T Consensus 71 -~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 71 -SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp -HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred -hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 245789999999999999999999999999999998854
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.98 E-value=6.5e-10 Score=120.87 Aligned_cols=131 Identities=21% Similarity=0.166 Sum_probs=91.3
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHH-hCCcEEEEEcCCCC-CCCchhhhhcCCCC
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLS-SVGYSLLIVNYRGS-LGFGEEALQSLPGK 535 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~-~~~~~~la-~~G~~vi~~d~rG~-~~~g~~~~~~~~~~ 535 (715)
+.|.+.+ .+|.|... .++.|+||++|||++..+.... ......|+ +.|++|+.++||.. -||.... ..+..
T Consensus 91 sedcl~l--nv~~P~~~--~~~~Pv~v~iHGG~~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~ 164 (537)
T 1ea5_A 91 SEDCLYL--NIWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALH--GSQEA 164 (537)
T ss_dssp CSCCCEE--EEEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCT--TCSSS
T ss_pred CCcCCeE--EEeccCCC--CCCCeEEEEECCCcccCCCCCCCccChHHHHhcCCEEEEEeccCccccccccCC--CCCCC
Confidence 3455555 57788743 3678999999999876654322 12234555 88999999999942 1121110 00112
Q ss_pred CCccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 005093 536 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 595 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~ 595 (715)
.+...+.|+.++++|+.++. ..|+++|.|+|+|+||.++..++.. .+.+|+++|+.+|..
T Consensus 165 ~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 229 (537)
T 1ea5_A 165 PGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 229 (537)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred cCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCc
Confidence 23334899999999998862 4799999999999999999888764 245899999999864
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.98 E-value=8.1e-10 Score=106.83 Aligned_cols=200 Identities=12% Similarity=0.043 Sum_probs=108.3
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.|+++||.+.. ...|..+...|.+ +.|+.+|++| ++. ...++.+.++.+. ...
T Consensus 17 ~~~l~~~hg~~~~--~~~~~~~~~~l~~--~~v~~~d~~g---~~~-------------~~~~~~~~i~~~~-----~~~ 71 (230)
T 1jmk_C 17 EQIIFAFPPVLGY--GLMYQNLSSRLPS--YKLCAFDFIE---EED-------------RLDRYADLIQKLQ-----PEG 71 (230)
T ss_dssp SEEEEEECCTTCC--GGGGHHHHHHCTT--EEEEEECCCC---STT-------------HHHHHHHHHHHHC-----CSS
T ss_pred CCCEEEECCCCCc--hHHHHHHHHhcCC--CeEEEecCCC---HHH-------------HHHHHHHHHHHhC-----CCC
Confidence 4789999996654 4567777777754 9999999997 322 1345555555441 135
Q ss_pred eEEEEEeChhHHHHHHHHhhC---CCceeEEEecCCcchhhhhccCCCCCCceeeecc--CCCCCCCCCCCCChhhHH--
Q 005093 561 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY--GSKGKDSFTESPSVEDLT-- 633 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-- 633 (715)
++.++|||+||.++..++.+. ++.+++++++++....... .............+ .......+..........
T Consensus 72 ~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (230)
T 1jmk_C 72 PLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVS-DLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQK 150 (230)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC---------CCHHHHHHHTTTCSGGGSHHHHHHHHHH
T ss_pred CeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCCCCccc-ccccccHHHHHHHHHhcChhhhhhhhHHHHHHHHHH
Confidence 799999999999999988765 3678888888765421100 00000000000000 000000000000000000
Q ss_pred --HHHhcCc-hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHH-cCCcEEEEEeCCCCcc-CCCCCchHHHHHHHHH
Q 005093 634 --RFHSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE-KGVETKVIVFPNDVHG-IERPQSDFESFLNIGL 708 (715)
Q Consensus 634 --~~~~~sp-~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~-~g~~~~~~~~~~~~H~-~~~~~~~~~~~~~i~~ 708 (715)
.+..... .....++++|+++++|++|..++.. .. .+.+ ....++++.+++ +|. +...+....+...+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~-~~----~w~~~~~~~~~~~~i~g-~H~~~~~~~~~~~~~~~i~~ 224 (230)
T 1jmk_C 151 THAFYSYYVNLISTGQVKADIDLLTSGADFDIPEW-LA----SWEEATTGAYRMKRGFG-THAEMLQGETLDRNAGILLE 224 (230)
T ss_dssp HHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCTT-EE----CSGGGBSSCEEEEECSS-CGGGTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccEEEEEeCCCCCCccc-cc----hHHHhcCCCeEEEEecC-ChHHHcCcHhHHHHHHHHHH
Confidence 0000000 0134578899999999999988622 11 1222 233578999997 882 3223334455566666
Q ss_pred HHHH
Q 005093 709 WFKK 712 (715)
Q Consensus 709 wl~~ 712 (715)
|+.+
T Consensus 225 ~l~~ 228 (230)
T 1jmk_C 225 FLNT 228 (230)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 6643
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.1e-10 Score=119.43 Aligned_cols=113 Identities=9% Similarity=-0.009 Sum_probs=80.9
Q ss_pred CCCCcEEEEEcCCCCCCCCccchH-HHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 555 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~-~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~ 555 (715)
+...|+||++||.+... ...|.. ++..|.+ .||.|+++|+|| +|.+.......+. ....+|+.+++++|.++.
T Consensus 67 ~~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G---~G~S~~~~~~~~~-~~~~~dl~~li~~L~~~~ 141 (452)
T 1bu8_A 67 QLDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRR---GSRTEYTQASYNT-RVVGAEIAFLVQVLSTEM 141 (452)
T ss_dssp CTTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHH---HHSSCHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechh---cccCchhHhHhhH-HHHHHHHHHHHHHHHHhc
Confidence 34578999999976543 245665 5566665 499999999998 4433211000000 112467778888887553
Q ss_pred CCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 556 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 556 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
.++.+++.|+|||+||.+|+.++.++|++++++++++|..
T Consensus 142 g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 142 GYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 4567899999999999999999999999999999988754
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-07 Score=95.44 Aligned_cols=236 Identities=13% Similarity=0.143 Sum_probs=130.7
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEec-CCccEEEEecCccccccccCCCcccceeecCC--CCeEEEEeecCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPS 119 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpD--g~~la~~~~~~~ 119 (715)
+.+...+|||||++||-.... +.-.+|.+.. .++....+. +..+ .+..+.|+|+ |+.|+-.+.
T Consensus 10 ~~V~~~~~s~~g~~las~s~D--~~v~iw~~~~~~~~~~~~l~---gH~~------~V~~v~~s~~~~g~~l~s~s~--- 75 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSD--KTIKIFEVEGETHKLIDTLT---GHEG------PVWRVDWAHPKFGTILASCSY--- 75 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETT--SCEEEEEBCSSCBCCCEEEC---CCSS------CEEEEEECCGGGCSEEEEEET---
T ss_pred CceEEEEECCCCCEEEEEeCC--CEEEEEecCCCCcEEEEEEc---cccC------CeEEEEecCCCcCCEEEEEcC---
Confidence 568889999999999876554 3223333321 122222221 1111 2378999874 777766532
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec-CCCCCCccceEEEecC--CC
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPL--NE 196 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~-~~~~~~~~~~~~~spd--g~ 196 (715)
...|.+||+++++...+. -......+..++|+|+ |+
T Consensus 76 -----------------------------------------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~ 114 (297)
T 2pm7_B 76 -----------------------------------------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP 114 (297)
T ss_dssp -----------------------------------------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS
T ss_pred -----------------------------------------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc
Confidence 266999999887532220 0223346778999998 66
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-C--ceecCCCCccccceeEcCC--
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-P--VVNLTESISSAFFPRFSPD-- 271 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~lt~~~~~~~~~~~spd-- 271 (715)
. |+..+ .+..|.++|+ ..+ . ...+......+...+|+|+
T Consensus 115 ~----l~s~s---------------~d~~v~~wd~-----------------~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 115 M----LLVAS---------------SDGKVSVVEF-----------------KENGTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp E----EEEEE---------------TTSEEEEEEB-----------------CSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred E----EEEEE---------------CCCcEEEEEe-----------------cCCCceeeeeeecccCccceEeecCCcc
Confidence 5 55443 2235777776 322 1 2344455566788999997
Q ss_pred -----------CCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCcc
Q 005093 272 -----------GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 340 (715)
Q Consensus 272 -----------g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 340 (715)
++.|+-.+.+. .|.++|+.++.... ..... +.+ +...+..++|
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~-----------~v~lwd~~~~~~~~------~~~~~--------l~~-H~~~V~~v~~ 212 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADN-----------LVKIWKYNSDAQTY------VLEST--------LEG-HSDWVRDVAW 212 (297)
T ss_dssp -----------CCEEEEEETTS-----------CEEEEEEETTTTEE------EEEEE--------ECC-CSSCEEEEEE
T ss_pred cccccCCCCCCcceEEEEcCCC-----------cEEEEEEcCCCceE------EEEEE--------ecC-CCCceEEEEE
Confidence 45666555442 37777776543210 00000 000 1123557789
Q ss_pred ccCC--CEEEEEeeeCCeeEEEEEECCCCc-EEEecC---CCCCceeEEEeecCCEEEEEE
Q 005093 341 LSDG--CTMLLSSIWGSSQVIISVNVSSGE-LLRITP---AESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 341 ~~dg--~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~---~~~~~~~~~~s~~~~~l~~~~ 395 (715)
+|++ ..++++...++..+||.++...+. ...+.. ....+....|+++++.|+...
T Consensus 213 sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~ 273 (297)
T 2pm7_B 213 SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (297)
T ss_dssp CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred CCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence 9986 356677777777777765432222 222221 112234457888887665443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=7.5e-08 Score=105.54 Aligned_cols=236 Identities=7% Similarity=-0.031 Sum_probs=138.1
Q ss_pred eeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccC
Q 005093 49 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 127 (715)
Q Consensus 49 ~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 127 (715)
++||+|+. |+.+.. ...+..++ ..++....+...... ..+.|||||++|+....
T Consensus 144 ~~~p~~~~--~vs~~~--d~~V~v~D~~t~~~~~~i~~g~~~----------~~v~~spdg~~l~v~~~----------- 198 (543)
T 1nir_A 144 DLDLPNLF--SVTLRD--AGQIALVDGDSKKIVKVIDTGYAV----------HISRMSASGRYLLVIGR----------- 198 (543)
T ss_dssp CCCGGGEE--EEEEGG--GTEEEEEETTTCCEEEEEECSTTE----------EEEEECTTSCEEEEEET-----------
T ss_pred ccCCCCEE--EEEEcC--CCeEEEEECCCceEEEEEecCccc----------ceEEECCCCCEEEEECC-----------
Confidence 58898843 344432 22455555 556655554432223 57899999998877532
Q ss_pred CCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEc--cCCceEeecCCCCCCccceEEEec----CCCCCccE
Q 005093 128 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI--NSGEVQAVKGIPKSLSVGQVVWAP----LNEGLHQY 201 (715)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~g~~~~l~~~~~~~~~~~~~~sp----dg~~~~~~ 201 (715)
...|.+||+ ++++...- .........++||| ||+.
T Consensus 199 ---------------------------------d~~V~v~D~~~~t~~~~~~--i~~g~~p~~va~sp~~~~dg~~---- 239 (543)
T 1nir_A 199 ---------------------------------DARIDMIDLWAKEPTKVAE--IKIGIEARSVESSKFKGYEDRY---- 239 (543)
T ss_dssp ---------------------------------TSEEEEEETTSSSCEEEEE--EECCSEEEEEEECCSTTCTTTE----
T ss_pred ---------------------------------CCeEEEEECcCCCCcEEEE--EecCCCcceEEeCCCcCCCCCE----
Confidence 156999999 77765432 22334567889999 9996
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCcee-cCCC-----------CccccceeEc
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LTES-----------ISSAFFPRFS 269 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lt~~-----------~~~~~~~~~s 269 (715)
++... . ....|.++|. .+++... +... ........+|
T Consensus 240 l~v~~-~-------------~~~~v~v~D~-----------------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 240 TIAGA-Y-------------WPPQFAIMDG-----------------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp EEEEE-E-------------ESSEEEEEET-----------------TTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred EEEEE-c-------------cCCeEEEEec-----------------cccccceeecccCcccCccccccCCceEEEEEC
Confidence 54443 1 1236778886 5554332 2211 1135678899
Q ss_pred CCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEE
Q 005093 270 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 349 (715)
Q Consensus 270 pdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~ 349 (715)
||++.+++....+ ..|+++|..+.+...++. ++ . +. .+..+.|+|||++++.
T Consensus 289 ~~~~~~~vs~~~~----------g~i~vvd~~~~~~l~~~~-----i~---~---~~-------~~~~~~~spdg~~l~v 340 (543)
T 1nir_A 289 HEHPEFIVNVKET----------GKVLLVNYKDIDNLTVTS-----IG---A---AP-------FLHDGGWDSSHRYFMT 340 (543)
T ss_dssp SSSSEEEEEETTT----------TEEEEEECTTSSSCEEEE-----EE---C---CS-------SCCCEEECTTSCEEEE
T ss_pred CCCCEEEEEECCC----------CeEEEEEecCCCcceeEE-----ec---c---Cc-------CccCceECCCCCEEEE
Confidence 9999876655432 369999987754321110 00 0 11 2456789999997766
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecCCC-CCc--eeE-EEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 350 SSIWGSSQVIISVNVSSGELLRITPAE-SNF--SWS-LLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 350 ~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~--~~~-~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
.....+ .|..+|++++++....... ..+ ... .++++++.++++.+.. -..|.+++..+
T Consensus 341 a~~~~~--~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~--d~~V~v~d~~~ 402 (543)
T 1nir_A 341 AANNSN--KVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG--DGSISLIGTDP 402 (543)
T ss_dssp EEGGGT--EEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCT
T ss_pred EecCCC--eEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCC--CceEEEEEeCC
Confidence 554333 5666899999887654421 111 112 2456667766554322 23466777654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-07 Score=95.91 Aligned_cols=236 Identities=14% Similarity=0.091 Sum_probs=135.4
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 123 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 123 (715)
...|+|+||++.|+++... ..+++.++ .+++.. .+..+..+ ..+.|+|||+.++.. .
T Consensus 51 ~egp~~~~~~~~l~~~d~~---~~~i~~~d~~~~~~~-~~~~~~~v----------~~i~~~~dg~l~v~~--~------ 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNIL---ERELHELHLASGRKT-VHALPFMG----------SALAKISDSKQLIAS--D------ 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEGG---GTEEEEEETTTTEEE-EEECSSCE----------EEEEEEETTEEEEEE--T------
T ss_pred CcCCeEeCCCCEEEEEECC---CCEEEEEECCCCcEE-EEECCCcc----------eEEEEeCCCeEEEEE--C------
Confidence 3678999999999888543 23688777 555443 33333332 688999999754432 1
Q ss_pred CccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCC---CCccceEEEecCCCCCcc
Q 005093 124 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~~~~~spdg~~~~~ 200 (715)
..|+++|+++++.+.+..... ......+.++|||+
T Consensus 109 --------------------------------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~---- 146 (326)
T 2ghs_A 109 --------------------------------------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA---- 146 (326)
T ss_dssp --------------------------------------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC----
T ss_pred --------------------------------------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC----
Confidence 238999999998776631111 12356788999997
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEec
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
+++....... ......||+++ + ++.+.+.........++|||||+.|++...
T Consensus 147 -l~v~~~~~~~--------~~~~~~l~~~~-~------------------g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 147 -LWIGTMGRKA--------ETGAGSIYHVA-K------------------GKVTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp -EEEEEEETTC--------CTTCEEEEEEE-T------------------TEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred -EEEEeCCCcC--------CCCceEEEEEe-C------------------CcEEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 5554421100 01224688886 2 333444332233567899999999988764
Q ss_pred CCCCCCCCccccceeEeeecC--CC-CCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCee
Q 005093 281 KSSVDSGAHSATDSLHRIDWP--TN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 357 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~--~~-~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 357 (715)
.. ..|+++++. ++ .... . ..... ...... .+..+.+.++|+ +++..... .
T Consensus 199 ~~----------~~I~~~d~~~~~Gl~~~~---~-~~~~~---~~~~~~-------~p~gi~~d~~G~-lwva~~~~--~ 251 (326)
T 2ghs_A 199 KV----------NRLMRVPLDARTGLPTGK---A-EVFID---STGIKG-------GMDGSVCDAEGH-IWNARWGE--G 251 (326)
T ss_dssp TT----------CEEEEEEBCTTTCCBSSC---C-EEEEE---CTTSSS-------EEEEEEECTTSC-EEEEEETT--T
T ss_pred CC----------CEEEEEEcccccCCcccC---c-eEEEE---CCCCCC-------CCCeeEECCCCC-EEEEEeCC--C
Confidence 42 368999875 33 2110 0 00000 000000 123456778886 55554322 3
Q ss_pred EEEEEECCCCcEEEecCCCCCceeEEEe-ecCCEEEEEEeCCC
Q 005093 358 VIISVNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSSSPV 399 (715)
Q Consensus 358 ~l~~~d~~tg~~~~l~~~~~~~~~~~~s-~~~~~l~~~~~~~~ 399 (715)
.|+++|+.+.....+...........|+ ++++.|+++.....
T Consensus 252 ~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 252 AVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp EEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred EEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 7889998544445554433333445666 67778877765544
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-08 Score=120.07 Aligned_cols=241 Identities=13% Similarity=0.144 Sum_probs=146.7
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
+.+.+...+|||||++||.....+ ...+| .+++...... +..+ .+..++|||||++|+..+.
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~-----~i~vw~~~~~~~~~~~~---~h~~------~v~~~~~s~~~~~l~s~~~-- 677 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADK-----TLQVFKAETGEKLLDIK---AHED------EVLCCAFSSDDSYIATCSA-- 677 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEEC---CCSS------CEEEEEECTTSSEEEEEET--
T ss_pred ccccEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCCEEEEec---cCCC------CEEEEEEecCCCEEEEEeC--
Confidence 346789999999999998775542 34455 3444333222 1111 2379999999998887532
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCC
Q 005093 119 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
...|.+||+.+++..... ......+..+.|+|+++..
T Consensus 678 ------------------------------------------d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 714 (1249)
T 3sfz_A 678 ------------------------------------------DKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHL 714 (1249)
T ss_dssp ------------------------------------------TSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCC
T ss_pred ------------------------------------------CCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCce
Confidence 256999999988755431 2334467789999986651
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCccccceeEcCCCCeEEE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~ 277 (715)
++.++. .+..|.++|+ .++. ...+..+...+....|+|||+.|+.
T Consensus 715 ---~l~sg~--------------~d~~v~vwd~-----------------~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 760 (1249)
T 3sfz_A 715 ---LLATGS--------------NDFFLKLWDL-----------------NQKECRNTMFGHTNSVNHCRFSPDDELLAS 760 (1249)
T ss_dssp ---EEEEEE--------------TTSCEEEEET-----------------TSSSEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred ---EEEEEe--------------CCCeEEEEEC-----------------CCcchhheecCCCCCEEEEEEecCCCEEEE
Confidence 333332 2236888887 4444 4456666777899999999998887
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCee
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 357 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 357 (715)
.+.+. .|.++|+.++......... ..... ....+......+..+.|+|||+.++..+ ..
T Consensus 761 ~s~dg-----------~v~vwd~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~v~~~~~s~dg~~l~~~~----~~ 819 (1249)
T 3sfz_A 761 CSADG-----------TLRLWDVRSANERKSINVK----RFFLS--SEDPPEDVEVIVKCCSWSADGDKIIVAA----KN 819 (1249)
T ss_dssp EESSS-----------EEEEEEGGGTEEEEEEECC----CCC----------CCCCCBCCCCBCTTSSEEEEEE----TT
T ss_pred EECCC-----------eEEEEeCCCCcccceeccc----ccccc--cCCccccccceEEEEEECCCCCEEEEEc----CC
Confidence 76552 4788887765431100000 00000 0000000112356788999999776654 24
Q ss_pred EEEEEECCCCcEEEecC--CCCCceeEEEeecCCEEEEEE
Q 005093 358 VIISVNVSSGELLRITP--AESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 358 ~l~~~d~~tg~~~~l~~--~~~~~~~~~~s~~~~~l~~~~ 395 (715)
.+..+|+.++....... ....+....|++++..++...
T Consensus 820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 859 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859 (1249)
T ss_dssp EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe
Confidence 67778988877655432 223445567888887666543
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-09 Score=108.76 Aligned_cols=105 Identities=19% Similarity=0.275 Sum_probs=79.3
Q ss_pred CCCcEEEEEcCCCCCCCC----ccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHc
Q 005093 479 SCDPLIVVLHGGPHSVSL----SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 554 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~----~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~ 554 (715)
++.|.||++||....... ..|....+.|+++||.|+++|++| +|.+.. .....+++.+.++.+++.
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~l~~~L~~~G~~V~~~d~~g---~g~s~~-------~~~~~~~l~~~i~~~l~~ 75 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSG---FQSDDG-------PNGRGEQLLAYVKTVLAA 75 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTTHHHHHHHTTCCEEECCCCS---SCCSSS-------TTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHHHHHHHHhCCCEEEEEcCCC---CCCCCC-------CCCCHHHHHHHHHHHHHH
Confidence 346779999996544311 467778899999999999999998 443311 012356666666666554
Q ss_pred CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 555 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 555 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
.+.+++.|+||||||.++..++.++|++++++|++++..
T Consensus 76 --~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 76 --TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp --HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 245789999999999999999999999999999999864
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.94 E-value=6.1e-08 Score=103.32 Aligned_cols=168 Identities=18% Similarity=0.132 Sum_probs=99.9
Q ss_pred ceEEEEEccCCce--------EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEeccc
Q 005093 162 PSLFVININSGEV--------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 233 (715)
Q Consensus 162 ~~l~~~~~~~g~~--------~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 233 (715)
..|.+|++.++.. ..+ ......+..++|+|++.. +++++. ....|.++|+
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~----~l~s~~--------------~dg~i~i~d~-- 261 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIF--TGHTAVVEDVAWHLLHES----LFGSVA--------------DDQKLMIWDT-- 261 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEE--CCCSSCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEET--
T ss_pred CeEEEEeCCCCCCCCceeccceee--cCCCCCEeeeEEeCCCCC----EEEEEe--------------CCCeEEEEEC--
Confidence 5689999977321 222 233446778999997777 666653 2246888887
Q ss_pred ccchhhhhhhhccCCCCC----CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcc
Q 005093 234 YKSEASELELKESSSEDL----PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 309 (715)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~----~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt 309 (715)
..+ ....+......+...+|+|+|+.++.+...+ ..|.++|+.+.+....+
T Consensus 262 ---------------~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d----------g~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 262 ---------------RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD----------KTVALWDLRNLKLKLHS 316 (430)
T ss_dssp ---------------TCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT----------SEEEEEETTCTTSCSEE
T ss_pred ---------------CCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC----------CeEEEEeCCCCCCCeEE
Confidence 332 3334445566788999999999766665443 24888898763321100
Q ss_pred cceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC-C-------------cEEEecC-
Q 005093 310 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS-G-------------ELLRITP- 374 (715)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~t-g-------------~~~~l~~- 374 (715)
.. .+...+..+.|+|+++.++++...++...|| |+.+ + +......
T Consensus 317 ~~------------------~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (430)
T 2xyi_A 317 FE------------------SHKDEIFQVQWSPHNETILASSGTDRRLHVW--DLSKIGEEQSTEDAEDGPPELLFIHGG 376 (430)
T ss_dssp EE------------------CCSSCEEEEEECSSCTTEEEEEETTSCCEEE--EGGGTTCCCCHHHHHHCCTTEEEECCC
T ss_pred ee------------------cCCCCEEEEEECCCCCCEEEEEeCCCcEEEE--eCCCCccccCccccccCCcceEEEcCC
Confidence 00 0112345678999998788877766655555 5544 1 2222222
Q ss_pred CCCCceeEEEeecCCEEEEEEe
Q 005093 375 AESNFSWSLLTLDGDNIIAVSS 396 (715)
Q Consensus 375 ~~~~~~~~~~s~~~~~l~~~~~ 396 (715)
....+....|++++.+++++.+
T Consensus 377 h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 377 HTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp CSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCceEEEECCCCCCEEEEEE
Confidence 2223444577787775555544
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.6e-10 Score=117.85 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=80.2
Q ss_pred CCCCcEEEEEcCCCCCCCCccchH-HHHHHHhC-CcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 555 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~-~~~~la~~-G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~ 555 (715)
+...|+||++||.+... ...|.. ++..|+++ ||.|+++|++| +|.+.......+. ....+|+.+++++|.++.
T Consensus 67 ~~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g---~G~S~~~~~~~~~-~~~~~dl~~~i~~L~~~~ 141 (452)
T 1w52_X 67 QSSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSS---GAKAEYTQAVQNI-RIVGAETAYLIQQLLTEL 141 (452)
T ss_dssp CTTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHH---HHTSCHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEeccc---ccccccHHHHHhH-HHHHHHHHHHHHHHHHhc
Confidence 34578999999966542 245655 56667654 99999999998 4433211000000 112457777888887543
Q ss_pred CCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 556 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 556 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
.++.+++.|+|||+||.+|..++.++|++++++++++|..
T Consensus 142 g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 142 SYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 3557899999999999999999999999999999998764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=7.4e-09 Score=109.72 Aligned_cols=263 Identities=10% Similarity=0.039 Sum_probs=143.7
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (715)
....|.++|+.++.. ... +..+.+.+...+|||||+.|+-.... +.-.+|.+ .+++..+. +. +...
T Consensus 128 ~Dg~i~vwd~~~~~~-~~~-----l~~h~~~V~~v~~~~~~~~l~sgs~D--~~i~iwd~-~~~~~~~~--~~-~h~~-- 193 (410)
T 1vyh_C 128 EDATIKVWDYETGDF-ERT-----LKGHTDSVQDISFDHSGKLLASCSAD--MTIKLWDF-QGFECIRT--MH-GHDH-- 193 (410)
T ss_dssp SSSCEEEEETTTCCC-CEE-----ECCCSSCEEEEEECTTSSEEEEEETT--SCCCEEET-TSSCEEEC--CC-CCSS--
T ss_pred CCCeEEEEECCCCcE-EEE-----EeccCCcEEEEEEcCCCCEEEEEeCC--CeEEEEeC-CCCceeEE--Ec-CCCC--
Confidence 334566666655432 122 22233678999999999988766544 33233322 33332221 11 1111
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCccc-CCccCceEEEEEccCC
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSG 172 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g 172 (715)
.+..+.|+|||+.|+..+.+... ..|................+...+.+.++ |..+ .......|.+||+.++
T Consensus 194 ----~V~~v~~~p~~~~l~s~s~D~~i--~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~s~D~~v~vwd~~~~ 266 (410)
T 1vyh_C 194 ----NVSSVSIMPNGDHIVSASRDKTI--KMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATK 266 (410)
T ss_dssp ----CEEEEEECSSSSEEEEEETTSEE--EEEETTTCCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTC
T ss_pred ----CEEEEEEeCCCCEEEEEeCCCeE--EEEECCCCcEEEEEeCCCccEEEEEECCC-CCEEEEEcCCCeEEEEECCCC
Confidence 23789999999988776654322 12222111111111112223333444554 3323 2223478999999888
Q ss_pred ceEeecCCCCCCccceEEEecCCCCCc---------------cEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 173 EVQAVKGIPKSLSVGQVVWAPLNEGLH---------------QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~spdg~~~~---------------~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
+..... ......+..+.|+|++.... +.++.++. .+..|.++|+
T Consensus 267 ~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--------------~D~~i~iwd~------ 325 (410)
T 1vyh_C 267 ECKAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--------------RDKTIKMWDV------ 325 (410)
T ss_dssp CEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--------------TTSEEEEEET------
T ss_pred ceeeEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--------------CCCeEEEEEC------
Confidence 755431 23344577889999742100 00333331 3346888887
Q ss_pred hhhhhhhccCCCCC-CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeee
Q 005093 238 ASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDV 315 (715)
Q Consensus 238 ~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~ 315 (715)
.++ ....+..+...+....|+|+|++|+-.+.+ ..|.++|+.+++... +..
T Consensus 326 -----------~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----------~~i~vwd~~~~~~~~~~~~----- 378 (410)
T 1vyh_C 326 -----------STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-----------KTLRVWDYKNKRCMKTLNA----- 378 (410)
T ss_dssp -----------TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT-----------TEEEEECCTTSCCCEEEEC-----
T ss_pred -----------CCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCceEEEEcC-----
Confidence 444 345566666778889999999998766544 258888887654311 110
Q ss_pred eeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 005093 316 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 361 (715)
Q Consensus 316 ~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~ 361 (715)
+...+..+.|+|++.. +++...++..++|.
T Consensus 379 ---------------h~~~v~~l~~~~~~~~-l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 379 ---------------HEHFVTSLDFHKTAPY-VVTGSVDQTVKVWE 408 (410)
T ss_dssp ---------------CSSCEEEEEECSSSSC-EEEEETTSEEEEEC
T ss_pred ---------------CCCcEEEEEEcCCCCE-EEEEeCCCcEEEEe
Confidence 1123456789999984 45666666666663
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-09 Score=117.91 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=81.0
Q ss_pred CCCCcEEEEEcCCCCCCCCccc-hHHHHHHH-hCCcEEEEEcCCC-CCCCchhhh---h-cCCCCCCccchhhHHHHHHH
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSY-SKSLAFLS-SVGYSLLIVNYRG-SLGFGEEAL---Q-SLPGKVGSQDVNDVLTAIDH 550 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~-~~~~~~la-~~G~~vi~~d~rG-~~~~g~~~~---~-~~~~~~~~~~~~d~~~~i~~ 550 (715)
.++.|+||++|||++..+.... ......|+ +.|++|+.+|||. .-||..... . ......+...+.|+.++++|
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al~w 217 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRW 217 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHHHH
Confidence 4678999999999876654321 11234455 4799999999993 222221100 0 00111233348899999999
Q ss_pred HHHcC---CCCCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 005093 551 VIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 595 (715)
Q Consensus 551 l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~ 595 (715)
+.++. ..|+++|.|+|+|+||.++..++... ..+|+++|+.+|..
T Consensus 218 v~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 218 LKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 99873 36899999999999999988777642 35899999998853
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-07 Score=98.08 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=91.3
Q ss_pred ccceEEeeCCC---CceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCC----CCeEEEEe
Q 005093 43 TGASAVVPSPS---GSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD----ETLIAYVA 115 (715)
Q Consensus 43 ~~~~~~~~Spd---g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpD----g~~la~~~ 115 (715)
+.+...+|||+ +..++++...+ +.-.+|.+..++....+.......+ ++.+..+.|+|+ |+.|+...
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~-~~v~vw~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGS-NRVTLYECHSQGEIRLLQSYVDADA-----DENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEET-TEEEEEEECGGGCEEEEEEEECSCT-----TCCEEEEEEEECTTTCCEEEEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCC-CEEEEEEcCCCcEEEeeeeccccCC-----CCcEEEEEeccCCCCCCCEEEEec
Confidence 56889999985 66665555443 2222332222333333322221111 122378999999 44555542
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEec-C
Q 005093 116 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-L 194 (715)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~sp-d 194 (715)
. ...|.+||+.+++..... ......+..+.|+| +
T Consensus 93 ~--------------------------------------------dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~ 127 (366)
T 3k26_A 93 S--------------------------------------------RGIIRIINPITMQCIKHY-VGHGNAINELKFHPRD 127 (366)
T ss_dssp T--------------------------------------------TCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSC
T ss_pred C--------------------------------------------CCEEEEEEchhceEeeee-cCCCCcEEEEEECCCC
Confidence 2 267999999888765431 23345678899999 6
Q ss_pred CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eec---CCCCccccceeEcC
Q 005093 195 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL---TESISSAFFPRFSP 270 (715)
Q Consensus 195 g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l---t~~~~~~~~~~~sp 270 (715)
++. |+..+ .+..|.++|+ .+++. ..+ ......+....|+|
T Consensus 128 ~~~----l~s~~---------------~dg~i~iwd~-----------------~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 128 PNL----LLSVS---------------KDHALRLWNI-----------------QTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp TTE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred CCE----EEEEe---------------CCCeEEEEEe-----------------ecCeEEEEecccccccCceeEEEECC
Confidence 665 54443 2236888887 44443 333 45566789999999
Q ss_pred CCCeEEEEecC
Q 005093 271 DGKFLVFLSAK 281 (715)
Q Consensus 271 dg~~l~~~~~~ 281 (715)
||+.|+..+.+
T Consensus 172 ~~~~l~~~~~d 182 (366)
T 3k26_A 172 LGEKIMSCGMD 182 (366)
T ss_dssp TSSEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 99988877655
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-09 Score=108.75 Aligned_cols=121 Identities=18% Similarity=0.147 Sum_probs=85.9
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCC--------CCccc----hHHHHHHHhCCcE---EEEEcCCCCCCCchhhhh
Q 005093 466 EAIFVSSSHKKDCSCDPLIVVLHGGPHSV--------SLSSY----SKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQ 530 (715)
Q Consensus 466 ~~~l~~P~~~~~~~~~P~vv~iHGg~~~~--------~~~~~----~~~~~~la~~G~~---vi~~d~rG~~~~g~~~~~ 530 (715)
.|....|. .. ..+.||++||..... ....| ..++..|+++||. |+++|++| +|.+...
T Consensus 29 gG~~~~p~---~~-~~~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g---~G~S~~~ 101 (342)
T 2x5x_A 29 GGFGGGSC---TA-TKTPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLS---SSEQGSA 101 (342)
T ss_dssp CEEECCSS---CC-CSCCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSC---HHHHTCG
T ss_pred CcccCCCC---CC-CCCeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCC---CCccCCc
Confidence 44555554 22 334489999965531 13456 6788899999998 99999998 5543211
Q ss_pred cCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecCCcch
Q 005093 531 SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 596 (715)
Q Consensus 531 ~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~~ 596 (715)
.. ........+++.++++.+.+.. ..+++.|+||||||.++..++.++ |++++++|+++|...
T Consensus 102 ~~-~~~~~~~~~~l~~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 102 QY-NYHSSTKYAIIKTFIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp GG-CCBCHHHHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCTT
T ss_pred cc-cCCHHHHHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCcc
Confidence 10 1112234678888888887763 347899999999999999999988 899999999998654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.7e-08 Score=98.42 Aligned_cols=226 Identities=10% Similarity=0.074 Sum_probs=120.0
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
.+.+...+|||||++||..... +.-.+|.+..+.....+..+ ..... .+..+.|+|||+.|+..+.+
T Consensus 105 ~~~v~~v~~sp~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~-~~h~~------~v~~~~~~p~~~~l~s~s~d---- 171 (345)
T 3fm0_A 105 ENEVKSVAWAPSGNLLATCSRD--KSVWVWEVDEEDEYECVSVL-NSHTQ------DVKHVVWHPSQELLASASYD---- 171 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETT--SCEEEEEECTTSCEEEEEEE-CCCCS------CEEEEEECSSSSCEEEEETT----
T ss_pred CCCceEEEEeCCCCEEEEEECC--CeEEEEECCCCCCeEEEEEe-cCcCC------CeEEEEECCCCCEEEEEeCC----
Confidence 3668999999999999877654 33333333322222222222 11111 23789999999988875432
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE---eecCCCCCCccceEEEecCCCCC
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~---~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
..|.+|++.+++.. .+ ......+..++|+|||+.
T Consensus 172 ----------------------------------------~~i~~w~~~~~~~~~~~~~--~~h~~~v~~l~~sp~g~~- 208 (345)
T 3fm0_A 172 ----------------------------------------DTVKLYREEEDDWVCCATL--EGHESTVWSLAFDPSGQR- 208 (345)
T ss_dssp ----------------------------------------SCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECTTSSE-
T ss_pred ----------------------------------------CcEEEEEecCCCEEEEEEe--cCCCCceEEEEECCCCCE-
Confidence 45888888877543 33 233446778999999997
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC-CCccccceeEcCCCCeEEE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~~~~spdg~~l~~ 277 (715)
|+..+. + +.-.||...... ....+..............+.. ....+...+|+|++..|+.
T Consensus 209 ---l~s~s~-D------------~~v~iW~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s 269 (345)
T 3fm0_A 209 ---LASCSD-D------------RTVRIWRQYLPG---NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALAT 269 (345)
T ss_dssp ---EEEEET-T------------SCEEEEEEECTT---CTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEE
T ss_pred ---EEEEeC-C------------CeEEEeccccCC---CCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEE
Confidence 765541 1 112344332210 0000000000000000111222 3445788999999999987
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCee
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 357 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 357 (715)
.+.+. .+.++++..+....... .....-... .+...+..++|+|++..++++...++..
T Consensus 270 ~~~d~-----------~i~vw~~~~~~~~~~~~--~~~~~~~~~--------~h~~~V~~v~~~p~~~~~laS~s~Dg~v 328 (345)
T 3fm0_A 270 ACGDD-----------AIRVFQEDPNSDPQQPT--FSLTAHLHQ--------AHSQDVNCVAWNPKEPGLLASCSDDGEV 328 (345)
T ss_dssp EETTS-----------CEEEEEECTTSCTTSCC--EEEEEEETT--------SSSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EeCCC-----------eEEEEEeCCCCCcceee--EEEEeeecc--------cccCcEeEeEEeCCCceEEEEcCCCCcE
Confidence 77653 25666655433211100 000000000 1222456788999986677888777777
Q ss_pred EEEEEE
Q 005093 358 VIISVN 363 (715)
Q Consensus 358 ~l~~~d 363 (715)
.||.+.
T Consensus 329 ~~W~~~ 334 (345)
T 3fm0_A 329 AFWKYQ 334 (345)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 777654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-07 Score=96.16 Aligned_cols=290 Identities=11% Similarity=0.037 Sum_probs=146.9
Q ss_pred CccccccceEEeeCCCC-ceEEEEecCCCCCCeEEEEecCCc-c-EEEEecCccccccccCCCcccceeecCCCCeEEEE
Q 005093 38 FPVEMTGASAVVPSPSG-SKLLVVRNPENESPIQFELWSQSQ-L-EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 114 (715)
Q Consensus 38 ~~~~~~~~~~~~~Spdg-~~la~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~ 114 (715)
|..+.+.+...+|||++ +.||-.+. + +.-.+|.+..... . ..+..+ .+..+ .+..+.|+|||++|+..
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~-D-~~i~vWd~~~~~~~~~~~~~~l-~~h~~------~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASR-D-KTIIMWKLTRDETNYGIPQRAL-RGHSH------FVSDVVISSDGQFALSG 104 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEET-T-SCEEEEEECCSSSCSEEEEEEE-CCCSS------CEEEEEECTTSSEEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcC-C-CeEEEEECCCCCcccceeeEEE-eCCCC------CEEEEEECCCCCEEEEE
Confidence 33445789999999995 55554433 2 4444554442221 1 111111 11111 23789999999998876
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCccc-CCccCceEEEEEccCCceEeecCCCCCCccceEEEec
Q 005093 115 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 193 (715)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~sp 193 (715)
+.+.... .+......................+.++ +..+ .......+.+||+.+..............+....|++
T Consensus 105 ~~d~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 105 SWDGTLR--LWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp ETTSEEE--EEETTTTEEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred cccccce--EEeecccceeeeecCCCCceeEEEEeec-CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence 5443211 1110000000000000000011112222 1111 1223467889998776655442122234566788999
Q ss_pred CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCccccceeEcCCC
Q 005093 194 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDG 272 (715)
Q Consensus 194 dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg 272 (715)
++.. .++.+.. .+..|.++|+ .+++ ...+......+...+|+|||
T Consensus 182 ~~~~----~~~~s~~-------------~d~~i~i~d~-----------------~~~~~~~~~~~h~~~v~~~~~s~~~ 227 (340)
T 4aow_A 182 NSSN----PIIVSCG-------------WDKLVKVWNL-----------------ANCKLKTNHIGHTGYLNTVTVSPDG 227 (340)
T ss_dssp CSSS----CEEEEEE-------------TTSCEEEEET-----------------TTTEEEEEECCCSSCEEEEEECTTS
T ss_pred CCCC----cEEEEEc-------------CCCEEEEEEC-----------------CCCceeeEecCCCCcEEEEEECCCC
Confidence 8876 4433311 2235777886 4443 34555566678889999999
Q ss_pred CeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEee
Q 005093 273 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 352 (715)
Q Consensus 273 ~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~ 352 (715)
+.|+..+.+. .|.++|+.+.......... ..+..+.|+|++. ++..+.
T Consensus 228 ~~l~s~s~Dg-----------~i~iwd~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~-~~~~~~ 275 (340)
T 4aow_A 228 SLCASGGKDG-----------QAMLWDLNEGKHLYTLDGG--------------------DIINALCFSPNRY-WLCAAT 275 (340)
T ss_dssp SEEEEEETTC-----------EEEEEETTTTEEEEEEECS--------------------SCEEEEEECSSSS-EEEEEE
T ss_pred CEEEEEeCCC-----------eEEEEEeccCceeeeecCC--------------------ceEEeeecCCCCc-eeeccC
Confidence 9887666542 4788888764431110000 0233556888876 433333
Q ss_pred eCCeeEEEEEECCCCcEEEecCC----------CCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 353 WGSSQVIISVNVSSGELLRITPA----------ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 353 ~~~~~~l~~~d~~tg~~~~l~~~----------~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
++ .|..+|+.++........ ...+....|+++++.|+.... +. .|.+-++.+|
T Consensus 276 -d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--Dg--~v~iW~~~tG 338 (340)
T 4aow_A 276 -GP--SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT--DN--LVRVWQVTIG 338 (340)
T ss_dssp -TT--EEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET--TS--CEEEEEEEC-
T ss_pred -CC--EEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC--CC--EEEEEeCCCc
Confidence 33 566678877665433221 112333567888876654332 22 3555566555
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=9.3e-09 Score=105.90 Aligned_cols=234 Identities=10% Similarity=0.094 Sum_probs=127.8
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCC--ccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
..+...+|||||+.||.....+ ...+| ..+ .......+. +..+ .+..+.|+|+++ |+..+.+.
T Consensus 98 ~~v~~~~~s~~~~~l~s~~~d~-----~v~iw~~~~~~~~~~~~~~~~-~h~~------~v~~~~~~~~~~-l~s~s~d~ 164 (340)
T 1got_B 98 SWVMTCAYAPSGNYVACGGLDN-----ICSIYNLKTREGNVRVSRELA-GHTG------YLSCCRFLDDNQ-IVTSSGDT 164 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTC-----EEEEEETTTCSBSCEEEEEEE-CCSS------CEEEEEEEETTE-EEEEETTS
T ss_pred ccEEEEEECCCCCEEEEEeCCC-----eEEEEECccCCCcceeEEEec-CCCc------cEEEEEECCCCc-EEEEECCC
Confidence 5578899999999998765542 33445 222 112111111 1111 236888999886 54444332
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCccc-CCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 119 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
. ...|....................+.|.|+ +..+ .......|.+||+.+++..... ......+..++|+|||+.
T Consensus 165 ~--i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~ 240 (340)
T 1got_B 165 T--CALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNA 240 (340)
T ss_dssp C--EEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSE
T ss_pred c--EEEEECCCCcEEEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCeeEEEE-cCCcCCEEEEEEcCCCCE
Confidence 2 122322211111111112222334556665 3323 2334578999999888754431 233446778999999986
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCC--CccccceeEcCCCCe
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES--ISSAFFPRFSPDGKF 274 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~--~~~~~~~~~spdg~~ 274 (715)
|+..+ .+..|.++|+ ..+.. ..+... ...+...+|||||+.
T Consensus 241 ----l~s~s---------------~d~~v~iwd~-----------------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 241 ----FATGS---------------DDATCRLFDL-----------------RADQELMTYSHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp ----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred ----EEEEc---------------CCCcEEEEEC-----------------CCCcEEEEEccCCcccceEEEEECCCCCE
Confidence 66544 2235777786 33332 222222 224778999999998
Q ss_pred EEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeC
Q 005093 275 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 354 (715)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~ 354 (715)
|+..+.+ ..|.++|+.++..... . .+ +...+..+.|+|||+.| ++...+
T Consensus 285 l~~g~~d-----------~~i~vwd~~~~~~~~~----------~--------~~-h~~~v~~~~~s~dg~~l-~s~s~D 333 (340)
T 1got_B 285 LLAGYDD-----------FNCNVWDALKADRAGV----------L--------AG-HDNRVSCLGVTDDGMAV-ATGSWD 333 (340)
T ss_dssp EEEEETT-----------SEEEEEETTTCCEEEE----------E--------EC-CSSCEEEEEECTTSSCE-EEEETT
T ss_pred EEEECCC-----------CeEEEEEcccCcEeeE----------e--------ec-CCCcEEEEEEcCCCCEE-EEEcCC
Confidence 8766644 2488888766442110 0 00 11234567899999844 555556
Q ss_pred CeeEEE
Q 005093 355 SSQVII 360 (715)
Q Consensus 355 ~~~~l~ 360 (715)
+..+||
T Consensus 334 ~~i~iW 339 (340)
T 1got_B 334 SFLKIW 339 (340)
T ss_dssp SCEEEE
T ss_pred ccEEec
Confidence 655655
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.4e-10 Score=121.36 Aligned_cols=128 Identities=21% Similarity=0.269 Sum_probs=86.6
Q ss_pred CCCCceEEEEEEecCCCC---CCCCCcEEEEEcCCCCCCCCcc-chHHHHHHHhC-CcEEEEEcCCCCC-CCchhhhhcC
Q 005093 459 KGAQKPFEAIFVSSSHKK---DCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSV-GYSLLIVNYRGSL-GFGEEALQSL 532 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~---~~~~~P~vv~iHGg~~~~~~~~-~~~~~~~la~~-G~~vi~~d~rG~~-~~g~~~~~~~ 532 (715)
+.|.+.+ .+|.|.... ..++.|+||++|||++..+... +.. ..|+++ |++|+.+|||... ||.....
T Consensus 108 sEdcL~l--~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~--~~la~~~~~vvv~~~YRl~~~Gfl~~~~--- 180 (574)
T 3bix_A 108 SEDCLYL--NIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDG--SVLASYGNVIVITVNYRLGVLGFLSTGD--- 180 (574)
T ss_dssp CSCCCEE--EEEEEC--------CCEEEEEECCCSSSSSCCGGGSCC--HHHHHHHTCEEEEECCCCHHHHHCCCSS---
T ss_pred CCcCCEE--EEEECCCCCcCCCCCCCcEEEEECCCcccCCCCCccCc--hhhhccCCEEEEEeCCcCcccccCcCCC---
Confidence 3455454 588897532 2356899999999987765442 222 345554 6999999999532 1111100
Q ss_pred CCCCCccchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhCC---CceeEEEecCC
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNP 593 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~ 593 (715)
....+...+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++.... .+|+++|+.++
T Consensus 181 ~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg 247 (574)
T 3bix_A 181 QAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSG 247 (574)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESC
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcC
Confidence 0112234489999999999986 2479999999999999999998876543 57999998886
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.90 E-value=6.3e-07 Score=95.10 Aligned_cols=245 Identities=15% Similarity=0.088 Sum_probs=147.3
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
.....||+++ .||...+. ...+| .+|+..++..+... .+ .+..++|||||++|+..+.
T Consensus 108 ~~~l~wS~~n-~lAvgld~------tV~lWd~~tg~~~~~~~~~~~-~~------~V~sv~fspdg~~lasgs~------ 167 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVALDN------SVYLWSASSGDILQLLQMEQP-GE------YISSVAWIKEGNYLAVGTS------ 167 (420)
T ss_dssp CBCEEECTTS-EEEEEETT------EEEEEETTTCCEEEEEECCST-TC------CEEEEEECTTSSEEEEEET------
T ss_pred ceeEEECCCC-EEEEEeCC------EEEEEECCCCCEEEEEEecCC-CC------cEEEEEECCCCCEEEEEEC------
Confidence 3558999865 67754321 34566 56777776654321 11 2379999999999887533
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 202 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i 202 (715)
...|.+||+++++..... ......+ ..+++++..
T Consensus 168 --------------------------------------Dg~v~iWd~~~~~~~~~~-~~h~~~v--~~~s~~~~~----- 201 (420)
T 4gga_A 168 --------------------------------------SAEVQLWDVQQQKRLRNM-TSHSARV--GSLSWNSYI----- 201 (420)
T ss_dssp --------------------------------------TSCEEEEETTTTEEEEEE-CCCSSCE--EEEEEETTE-----
T ss_pred --------------------------------------CCeEEEEEcCCCcEEEEE-eCCCCce--EEEeeCCCE-----
Confidence 256999999988765431 2222233 345566664
Q ss_pred EEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 203 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 203 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
+.++. ....++..|.. ........+...........|+|+|+.|+..+.+.
T Consensus 202 l~sgs--------------~d~~i~~~d~~---------------~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~ 252 (420)
T 4gga_A 202 LSSGS--------------RSGHIHHHDVR---------------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 252 (420)
T ss_dssp EEEEE--------------TTSEEEEEETT---------------SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEe--------------CCCceeEeeec---------------ccceeeEEecccccceeeeeecCCCCeeeeeeccc
Confidence 44442 22357777751 02223345556666788899999999988776653
Q ss_pred CCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 005093 283 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 362 (715)
Q Consensus 283 ~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~ 362 (715)
.+.+++..+++.......... .+...+..+.|+|++..++++........|..+
T Consensus 253 -----------~v~i~~~~~~~~~~~~~~~~~---------------~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw 306 (420)
T 4gga_A 253 -----------LVNVWPSAPGEGGWVPLQTFT---------------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306 (420)
T ss_dssp -----------CEEEEESSCCSSCSCCSEEEC---------------CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred -----------cceEEeeccccccceeeeeec---------------ccCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence 377778766543211110000 011134456788888777776554444567778
Q ss_pred ECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 363 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 363 d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
|+.+++..........+....++++++.++......+ ..|.+.+..++
T Consensus 307 d~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d--~~I~iwd~~~~ 354 (420)
T 4gga_A 307 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ--NQLVIWKYPTM 354 (420)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTT--CCEEEEETTTC
T ss_pred eCCccccceeeccccceeeeeecCCCCeEEEEEecCC--CEEEEEECCCC
Confidence 9999987776655554445678888888876553332 23666665443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.89 E-value=4.5e-07 Score=93.92 Aligned_cols=121 Identities=7% Similarity=-0.031 Sum_probs=71.6
Q ss_pred eeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceec--CCCCCccccccCCCCCCccccC
Q 005093 266 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC--AEGDCFPGLYSSSILSNPWLSD 343 (715)
Q Consensus 266 ~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~d 343 (715)
..++|||+.++|.+.. ..++++|+.++....+. . ..+... ....-.| .+...+++++|
T Consensus 205 ~~~~~~g~~~~~~~~~-----------~~v~v~d~~~~~~~~~~-~----~~~~~~~~~~~~~~p----~g~~~~a~~~d 264 (361)
T 2oiz_A 205 IAPALDKDKAHFVSYY-----------GNVYSADFSGDEVKVDG-P----WSLLNDEDKAKNWVP----GGYNLVGLHRA 264 (361)
T ss_dssp SCCEECSSEEEEEBTT-----------SEEEEEECSSSSCEEEE-E----EESCCHHHHHTTCEE----CCSSCEEEETT
T ss_pred EEecccCCEEEEEeCC-----------CeEEEEEecCCCceecc-c----ccccCcccccccccc----CCeeEEEEecC
Confidence 3457899988887643 24899998765432110 0 000000 0000001 12234678999
Q ss_pred CCEEEEEeeeC--------CeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 344 GCTMLLSSIWG--------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 344 g~~l~~~~~~~--------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
++.+|+..... ....++.+|+++++...-..... .....++++|+.|+... . ..|.++|..++
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n-~----~~v~v~D~~t~ 335 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD-G----GNVNVYDISQP 335 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC-S----SCEEEEECSSS
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC-C----CeEEEEECCCC
Confidence 99888765411 24589999999988765444333 45578999999766433 2 67888887654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.89 E-value=7e-08 Score=99.89 Aligned_cols=192 Identities=15% Similarity=0.127 Sum_probs=116.9
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEec-CccccccccCCCcccceeecC--CCCeEEEEe
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNS--DETLIAYVA 115 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wSp--Dg~~la~~~ 115 (715)
+.+.+...+|+|++++|+-....+ ...+| ..++....+.. ...+ ..+.|+| +|+.|+..+
T Consensus 153 h~~~v~~~~~~~~~~~l~t~s~D~-----~v~lwd~~~~~~~~~~~~h~~~v----------~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 153 HTNYLSACSFTNSDMQILTASGDG-----TCALWDVESGQLLQSFHGHGADV----------LCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTCCEEEEEECCSSCE----------EEEEECCCSSCCEEEEEE
T ss_pred cCCcEEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEEcCCCCCe----------EEEEEEeCCCCCEEEEEe
Confidence 346688899999999988665542 44566 44444433321 1222 5677776 566666543
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCC
Q 005093 116 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLN 195 (715)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg 195 (715)
. ...|.+||+.+++..... ......+..++|+|+|
T Consensus 218 ~--------------------------------------------Dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~ 252 (354)
T 2pbi_B 218 C--------------------------------------------DKKAMVWDMRSGQCVQAF-ETHESDVNSVRYYPSG 252 (354)
T ss_dssp T--------------------------------------------TSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTS
T ss_pred C--------------------------------------------CCeEEEEECCCCcEEEEe-cCCCCCeEEEEEeCCC
Confidence 2 256999999988765431 2334467789999999
Q ss_pred CCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCC--CccccceeEcCCC
Q 005093 196 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES--ISSAFFPRFSPDG 272 (715)
Q Consensus 196 ~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~--~~~~~~~~~spdg 272 (715)
+. |+..+ .+..|.++|+ ..+.. ..+... ........|||||
T Consensus 253 ~~----l~s~s---------------~D~~v~lwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 253 DA----FASGS---------------DDATCRLYDL-----------------RADREVAIYSKESIIFGASSVDFSLSG 296 (354)
T ss_dssp SE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred CE----EEEEe---------------CCCeEEEEEC-----------------CCCcEEEEEcCCCcccceeEEEEeCCC
Confidence 86 66554 2235777776 33332 222222 1245678999999
Q ss_pred CeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEe
Q 005093 273 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 351 (715)
Q Consensus 273 ~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~ 351 (715)
+.|+-.+.+. .|.++|+.++.... +.. +...+..++|+|||+.| ++.
T Consensus 297 ~~l~~g~~d~-----------~i~vwd~~~~~~~~~l~~--------------------h~~~v~~l~~spdg~~l-~sg 344 (354)
T 2pbi_B 297 RLLFAGYNDY-----------TINVWDVLKGSRVSILFG--------------------HENRVSTLRVSPDGTAF-CSG 344 (354)
T ss_dssp SEEEEEETTS-----------CEEEEETTTCSEEEEECC--------------------CSSCEEEEEECTTSSCE-EEE
T ss_pred CEEEEEECCC-----------cEEEEECCCCceEEEEEC--------------------CCCcEEEEEECCCCCEE-EEE
Confidence 9887665442 48888886654311 100 11234567899999844 555
Q ss_pred eeCCeeEEE
Q 005093 352 IWGSSQVII 360 (715)
Q Consensus 352 ~~~~~~~l~ 360 (715)
..++..+||
T Consensus 345 s~D~~v~vW 353 (354)
T 2pbi_B 345 SWDHTLRVW 353 (354)
T ss_dssp ETTSEEEEE
T ss_pred cCCCCEEec
Confidence 656655665
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.4e-07 Score=94.85 Aligned_cols=261 Identities=10% Similarity=0.075 Sum_probs=142.0
Q ss_pred EEeeCCCCceEEEEecC------CCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 47 AVVPSPSGSKLLVVRNP------ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 47 ~~~~Spdg~~la~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
..++||||++|+..... ++....+..++ .+++....+.++...+ +-.......+.+||||++|+.....
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r--~~~g~~P~~~~~spDGk~lyV~n~~-- 197 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR--FLVGTYQWMNALTPDNKNLLFYQFS-- 197 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC--CCBSCCGGGSEECTTSSEEEEEECS--
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc--cccCCCcceEEEcCCCCEEEEEecC--
Confidence 78999999998765421 00223567777 5666655555431100 0000012589999999998775321
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCc
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
....|.++|++++++..-....+ .....|+|+.
T Consensus 198 ----------------------------------------~~~~VsVID~~t~kvv~~I~v~g-----~~~~~p~g~~-- 230 (426)
T 3c75_H 198 ----------------------------------------PAPAVGVVDLEGKTFDRMLDVPD-----CYHIFPASPT-- 230 (426)
T ss_dssp ----------------------------------------SSCEEEEEETTTTEEEEEEECCS-----EEEEEEEETT--
T ss_pred ----------------------------------------CCCeEEEEECCCCeEEEEEEcCC-----ceeeccCCCc--
Confidence 12679999999988653310111 1234566655
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-----ecCCCCc-cccceeEcCCCC
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-----NLTESIS-SAFFPRFSPDGK 273 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~lt~~~~-~~~~~~~spdg~ 273 (715)
.++.... ...+..+++ .+++.. .+..... ....+.+++||+
T Consensus 231 --~~v~~~~--------------dG~~~~V~~-----------------~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 231 --VFYMNCR--------------DGSLARVDF-----------------ADGETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp --EEEEEET--------------TSSEEEEEC-----------------CTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred --EEEEEcC--------------CCCEEEEEC-----------------CCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 4443321 124555553 222222 1111111 123467899999
Q ss_pred eEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCC-ccccccCCCCCCccccCCCEEEEEee
Q 005093 274 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC-FPGLYSSSILSNPWLSDGCTMLLSSI 352 (715)
Q Consensus 274 ~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~dg~~l~~~~~ 352 (715)
.++|.+.. ..++++|+.++....+.. +....... ..+....+...+.+++|++++|+...
T Consensus 278 ~~~~~s~~-----------g~V~ViD~~~~~~~v~~~--------~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 278 RLVWPTYT-----------GKIFQADLTAEGATFRAP--------IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp EEEEEBTT-----------SEEEEEEECSSCEEECCC--------EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred EEEEEeCC-----------CcEEEEeccCCceEEeee--------eeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 99988743 259999987654321110 00000000 00000012334678999998888764
Q ss_pred eC-------CeeEEEEEECCCCcEEEecCCCCCceeEEEeecCC-EEEEEEeCCCCCCeEEEEeecccC
Q 005093 353 WG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD-NIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 353 ~~-------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~-~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
.. +...++.+|++++++..-...........|++|++ .+|.+... ...|.++|+.+.+
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~---s~~VsVID~~t~k 404 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG---TQTLHIYDAATGE 404 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT---TTEEEEEETTTCC
T ss_pred ccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC---CCeEEEEECCCCC
Confidence 32 34689999999988765433222123467899998 55544322 3568888876543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-07 Score=103.53 Aligned_cols=266 Identities=12% Similarity=0.091 Sum_probs=149.6
Q ss_pred EEEEEEeecCC---CCccccccCCCcccccc-ceEEeeCC--CCceEEEEecCCCCCCeEEEEecCC------ccEEEEe
Q 005093 17 FMLSTVISKEN---ENSVTFQWAPFPVEMTG-ASAVVPSP--SGSKLLVVRNPENESPIQFELWSQS------QLEKEFH 84 (715)
Q Consensus 17 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~Sp--dg~~la~~~~~~~~~~~~~~~~~~~------~~~~~~~ 84 (715)
.+.++++.++. .....+ ..+.+. +...+||| ||++||..... +.-.+|.+. .+ +...+..
T Consensus 40 ~v~v~~~~~~~~~~~~~~~~-----~~h~~~~v~~~~~sp~~~~~~l~s~~~d--g~v~vw~~~-~~~~~~~~~~~~~~~ 111 (615)
T 1pgu_A 40 SAFVRCLDDGDSKVPPVVQF-----TGHGSSVVTTVKFSPIKGSQYLCSGDES--GKVIVWGWT-FDKESNSVEVNVKSE 111 (615)
T ss_dssp EEEEEECCSSCCSSCSEEEE-----CTTTTSCEEEEEECSSTTCCEEEEEETT--SEEEEEEEE-EEGGGTEEEEEEEEE
T ss_pred eEEEEECCCCCCccccceEE-----ecCCCceEEEEEECcCCCCCEEEEecCC--CEEEEEeCC-CCcccccccccccch
Confidence 46666676542 112222 223366 89999999 99999877654 322333332 22 1122221
Q ss_pred cCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceE
Q 005093 85 VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSL 164 (715)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 164 (715)
.. ... +.+..+.|||||++|+....... ....|
T Consensus 112 ~~-~~~------~~v~~~~~s~~~~~l~~~~~~~~----------------------------------------~~~~v 144 (615)
T 1pgu_A 112 FQ-VLA------GPISDISWDFEGRRLCVVGEGRD----------------------------------------NFGVF 144 (615)
T ss_dssp EE-CCS------SCEEEEEECTTSSEEEEEECCSS----------------------------------------CSEEE
T ss_pred hh-ccc------ccEEEEEEeCCCCEEEEeccCCC----------------------------------------CccEE
Confidence 11 111 12379999999999988754320 12567
Q ss_pred EEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhh
Q 005093 165 FVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 244 (715)
Q Consensus 165 ~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (715)
++|| .+.....+ ......+..+.|+|+++. +++++. .+..|.++|+
T Consensus 145 ~~~d-~~~~~~~~--~~~~~~v~~~~~~~~~~~----~l~~~~--------------~d~~v~vwd~------------- 190 (615)
T 1pgu_A 145 ISWD-SGNSLGEV--SGHSQRINACHLKQSRPM----RSMTVG--------------DDGSVVFYQG------------- 190 (615)
T ss_dssp EETT-TCCEEEEC--CSCSSCEEEEEECSSSSC----EEEEEE--------------TTTEEEEEET-------------
T ss_pred EEEE-CCCcceee--ecCCccEEEEEECCCCCc----EEEEEe--------------CCCcEEEEeC-------------
Confidence 8887 23334444 334446778999999996 666653 2236778886
Q ss_pred ccCCCCC-CceecCCCCc---cccceeEcCC-CCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 245 ESSSEDL-PVVNLTESIS---SAFFPRFSPD-GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 245 ~~~~~~~-~~~~lt~~~~---~~~~~~~spd-g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
.++ ....+..... .+....|+|| |+.|+..+.+. .|+++|+.+++.......
T Consensus 191 ----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~-------- 247 (615)
T 1pgu_A 191 ----PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR-----------KISCFDGKSGEFLKYIED-------- 247 (615)
T ss_dssp ----TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC-----------CEEEEETTTCCEEEECCB--------
T ss_pred ----CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC-----------eEEEEECCCCCEeEEecc--------
Confidence 433 3345555555 6888999999 99887766542 488889877553211100
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-----CCceeEEEeecCCEEEEE
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-----SNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-----~~~~~~~~s~~~~~l~~~ 394 (715)
.. ..+...+..+.|+ +++.++. ...++ .|..+|+.+++........ .......+ ++++.++..
T Consensus 248 -~~------~~~~~~v~~~~~~-~~~~l~~-~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 315 (615)
T 1pgu_A 248 -DQ------EPVQGGIFALSWL-DSQKFAT-VGADA--TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGNGRIISL 315 (615)
T ss_dssp -TT------BCCCSCEEEEEES-SSSEEEE-EETTS--EEEEEETTTTEEEEEEECCTTCGGGCEEEEEE-EETTEEEEE
T ss_pred -cc------cccCCceEEEEEc-CCCEEEE-EcCCC--cEEEEECCCCcEEEEEcCCCCcccCceeEEEe-CCCCeEEEE
Confidence 00 0011134566788 8875544 44343 5666788887765544332 11111233 366666554
Q ss_pred EeCCCCCCeEEEEeec
Q 005093 395 SSSPVDVPQVKYGYFV 410 (715)
Q Consensus 395 ~~~~~~p~~l~~~~~~ 410 (715)
..+ ..|.+.++.
T Consensus 316 ~~~----g~i~~~d~~ 327 (615)
T 1pgu_A 316 SLD----GTLNFYELG 327 (615)
T ss_dssp ETT----SCEEEEETT
T ss_pred ECC----CCEEEEECC
Confidence 422 235555554
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.2e-09 Score=108.62 Aligned_cols=210 Identities=10% Similarity=0.077 Sum_probs=114.1
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHH-HHHHHHcCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLAN 558 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~-i~~l~~~~~~d 558 (715)
..|.|+++||.+.. ...|..++..| ..+|.|+++|++| +|.+... . ..++++.+. ++.+.+.. .
T Consensus 100 ~~~~l~~lhg~~~~--~~~~~~l~~~L-~~~~~v~~~d~~g---~~~~~~~--~-----~~~~~~a~~~~~~i~~~~--~ 164 (329)
T 3tej_A 100 NGPTLFCFHPASGF--AWQFSVLSRYL-DPQWSIIGIQSPR---PNGPMQT--A-----ANLDEVCEAHLATLLEQQ--P 164 (329)
T ss_dssp SSCEEEEECCTTSC--CGGGGGGGGTS-CTTCEEEEECCCT---TTSHHHH--C-----SSHHHHHHHHHHHHHHHC--S
T ss_pred CCCcEEEEeCCccc--chHHHHHHHhc-CCCCeEEEeeCCC---CCCCCCC--C-----CCHHHHHHHHHHHHHHhC--C
Confidence 45789999996654 44666666666 5689999999998 4443211 1 124444443 34444331 2
Q ss_pred CceEEEEEeChhHHHHHHHHhh---CCCceeEEEecCCcchhhhhccCCCCCCc--eeeeccCCC---C-CCCCCCCCCh
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPLCNLALMVGTTDIPDW--CYVESYGSK---G-KDSFTESPSV 629 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~---~p~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~-~~~~~~~~~~ 629 (715)
..++.|+||||||.++..+|.+ +|+++.+++++.+................ ......... . .........
T Consensus 165 ~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 243 (329)
T 3tej_A 165 HGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGSTST- 243 (329)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCTHHHHTC-----CCCCTHHHHHHHHHHHHHHTTCCCSCC-
T ss_pred CCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCCCccccccccccccChhhHHHHHHHHHHHHHhccccccH-
Confidence 3689999999999999999988 89999999988876543211100000000 000000000 0 000000000
Q ss_pred hhHHH----HHhc-Cch--hhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc-CCCCCchHH
Q 005093 630 EDLTR----FHSK-SPI--SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG-IERPQSDFE 701 (715)
Q Consensus 630 ~~~~~----~~~~-sp~--~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~-~~~~~~~~~ 701 (715)
..... +... ..+ .....+.+|++++.|+.|..++......+.+.. ..++++.+++ +|. +..+.....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~l~~~~~d~~~~~~~~~~w~~~~----~~~~~~~v~g-~H~~~~~~~~~~~ 318 (329)
T 3tej_A 244 ELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWI----AELDIYRQDC-AHVDIISPGTFEK 318 (329)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEGGGCCTTCCHHHHHTTTE----EEEEEEEESS-CGGGGGSTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEeccCCCCCCCchhhHHHhc----CCcEEEEecC-ChHHhCCChHHHH
Confidence 11111 1100 000 113456789999999999887665433332222 3588889984 665 443433334
Q ss_pred HHHHHHHHH
Q 005093 702 SFLNIGLWF 710 (715)
Q Consensus 702 ~~~~i~~wl 710 (715)
+...+.+|+
T Consensus 319 ia~~l~~~L 327 (329)
T 3tej_A 319 IGPIIRATL 327 (329)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555555
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-07 Score=107.31 Aligned_cols=242 Identities=14% Similarity=0.060 Sum_probs=139.9
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCc----cE-EEEecCccccccccCCCcccceeecCCCCeEEEEe
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ----LE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 115 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~ 115 (715)
+.+.+...+|+|++..++.....+ +.-.+|.+..... .. .+...... +..+.|||||+.|+..+
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D-~~i~~W~~~~~~~~~~~~~~~~~~h~~~----------v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRD-KSIILWKLTKDDKAYGVAQRRLTGHSHF----------VEDVVLSSDGQFALSGS 449 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETT-SEEEEEECCCSTTCSCEEEEEEECCSSC----------EEEEEECTTSSEEEEEE
T ss_pred CCceeEEEEecCCCCCEEEEEeCC-CcEEEEEccCCCcccccccceecCCCCc----------EEEEEECCCCCEEEEEe
Confidence 446789999999876555554443 3223333322221 11 12212222 27899999999887653
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCC
Q 005093 116 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLN 195 (715)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg 195 (715)
. ...|.+||+.+++..... ......+..++|+|||
T Consensus 450 ~--------------------------------------------Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~ 484 (694)
T 3dm0_A 450 W--------------------------------------------DGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDN 484 (694)
T ss_dssp T--------------------------------------------TSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTS
T ss_pred C--------------------------------------------CCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCC
Confidence 2 267999999988654331 2334467789999999
Q ss_pred CCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecC----CCCccccceeEcCC
Q 005093 196 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT----ESISSAFFPRFSPD 271 (715)
Q Consensus 196 ~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt----~~~~~~~~~~~spd 271 (715)
+. |+..+ .+..|.++|+ .+.....+. .+...+....|+|+
T Consensus 485 ~~----l~s~s---------------~D~~i~iwd~-----------------~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 485 RQ----IVSAS---------------RDRTIKLWNT-----------------LGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp SC----EEEEE---------------TTSCEEEECT-----------------TSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred CE----EEEEe---------------CCCEEEEEEC-----------------CCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 98 77655 2235666674 332222222 23345788999999
Q ss_pred CC--eEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEE
Q 005093 272 GK--FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 349 (715)
Q Consensus 272 g~--~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~ 349 (715)
+. .|+-.+.+ ..|.++|+.+++..... . .+...+..++|+|||+. ++
T Consensus 529 ~~~~~l~s~s~d-----------~~v~vwd~~~~~~~~~~------------------~-~h~~~v~~v~~spdg~~-l~ 577 (694)
T 3dm0_A 529 TLQPTIVSASWD-----------KTVKVWNLSNCKLRSTL------------------A-GHTGYVSTVAVSPDGSL-CA 577 (694)
T ss_dssp SSSCEEEEEETT-----------SCEEEEETTTCCEEEEE------------------C-CCSSCEEEEEECTTSSE-EE
T ss_pred CCcceEEEEeCC-----------CeEEEEECCCCcEEEEE------------------c-CCCCCEEEEEEeCCCCE-EE
Confidence 84 34443333 24888888764431100 0 01123456789999984 45
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 350 SSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 350 ~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+...++. |..+|+.+++..........+....|++++..++... . ..|.+.++.++
T Consensus 578 sg~~Dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~----~~i~iwd~~~~ 633 (694)
T 3dm0_A 578 SGGKDGV--VLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-E----HGIKIWDLESK 633 (694)
T ss_dssp EEETTSB--CEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-T----TEEEEEETTTT
T ss_pred EEeCCCe--EEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-C----CCEEEEECCCC
Confidence 5555554 5555888887665544444444557788776554432 2 23666676543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-07 Score=96.42 Aligned_cols=232 Identities=13% Similarity=0.107 Sum_probs=122.1
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 93 (715)
...|.++|+.++.. ... +..+.+.+...+|||||++|+-....+ ...+| ..+.............
T Consensus 97 D~~v~lwd~~~~~~-~~~-----~~~h~~~v~~v~~sp~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~~--- 162 (343)
T 2xzm_R 97 DKTLRLWDLRTGTT-YKR-----FVGHQSEVYSVAFSPDNRQILSAGAER-----EIKLWNILGECKFSSAEKENHS--- 162 (343)
T ss_dssp TSEEEEEETTSSCE-EEE-----EECCCSCEEEEEECSSTTEEEEEETTS-----CEEEEESSSCEEEECCTTTSCS---
T ss_pred CCcEEEEECCCCcE-EEE-----EcCCCCcEEEEEECCCCCEEEEEcCCC-----EEEEEeccCCceeeeecccCCC---
Confidence 44566666654421 122 222336688999999999998665432 34455 2232221111111111
Q ss_pred cCCCcccceeecCCCC----------eEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCce
Q 005093 94 YADGWFEGISWNSDET----------LIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS 163 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~----------~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 163 (715)
.++..+.|+|+++ .|+..+ ....
T Consensus 163 ---~~v~~~~~~~~~~~~~~~~~~~~~l~s~~--------------------------------------------~d~~ 195 (343)
T 2xzm_R 163 ---DWVSCVRYSPIMKSANKVQPFAPYFASVG--------------------------------------------WDGR 195 (343)
T ss_dssp ---SCEEEEEECCCCCSCSCCCSSCCEEEEEE--------------------------------------------TTSE
T ss_pred ---ceeeeeeeccccccccccCCCCCEEEEEc--------------------------------------------CCCE
Confidence 1337889999874 222221 2367
Q ss_pred EEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhh
Q 005093 164 LFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELEL 243 (715)
Q Consensus 164 l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 243 (715)
|.+||........+ ......+..++|+|||+. |+..+ .+..|.++|+.
T Consensus 196 i~iwd~~~~~~~~~--~~h~~~v~~~~~s~~g~~----l~sgs---------------~dg~v~iwd~~----------- 243 (343)
T 2xzm_R 196 LKVWNTNFQIRYTF--KAHESNVNHLSISPNGKY----IATGG---------------KDKKLLIWDIL----------- 243 (343)
T ss_dssp EEEEETTTEEEEEE--ECCSSCEEEEEECTTSSE----EEEEE---------------TTCEEEEEESS-----------
T ss_pred EEEEcCCCceeEEE--cCccccceEEEECCCCCE----EEEEc---------------CCCeEEEEECC-----------
Confidence 89999654444444 233446778999999997 76554 22367777751
Q ss_pred hccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCC
Q 005093 244 KESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 323 (715)
Q Consensus 244 ~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 323 (715)
..............+...+||||++.|+. +.+. .+.++++.++....+..-... ++...
T Consensus 244 -----~~~~~~~~~~~~~~v~~v~~sp~~~~la~-~~d~-----------~v~iw~~~~~~~~~~~~~~~~--~~~~~-- 302 (343)
T 2xzm_R 244 -----NLTYPQREFDAGSTINQIAFNPKLQWVAV-GTDQ-----------GVKIFNLMTQSKAPVCTIEAE--PITKA-- 302 (343)
T ss_dssp -----CCSSCSEEEECSSCEEEEEECSSSCEEEE-EESS-----------CEEEEESSSCCSCSEEECCCC--SGGGB--
T ss_pred -----CCcccceeecCCCcEEEEEECCCCCEEEE-ECCC-----------CEEEEEeCCCCCCceEEeecC--cchhh--
Confidence 22222222222345788999999987753 3221 277778776543221000000 00000
Q ss_pred CCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 005093 324 GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 324 ~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d 363 (715)
....+ +...+..++|+|+|+.| ++...++..++|.++
T Consensus 303 -~~~~~-~~~~v~~~~~sp~g~~l-~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 303 -EGQKG-KNPQCTSLAWNALGKKL-FAGFTDGVIRTFSFE 339 (343)
T ss_dssp -TTBCC-SCCCEEEEEECSSSCCE-EEEETTSEEEEEEEE
T ss_pred -hhhcC-CCCceEEEEECCCCCeE-EEecCCceEEEEEEE
Confidence 00000 11134567899999855 555556666666543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-08 Score=106.75 Aligned_cols=194 Identities=14% Similarity=0.113 Sum_probs=119.3
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
..+...+|||||++||-....+ ...+|+... .+.... |..-.....+..++|||||+.||..+.+
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg-----~V~iwd~~~--~l~~l~---~~~~~~~~sv~svafSPDG~~LAsgs~D----- 150 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNG-----NVSVFKDNK--MLTNLD---SKGNLSSRTYHCFEWNPIESSIVVGNED----- 150 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTS-----CEEEEETTE--EEEECC---CSSCSTTTCEEEEEECSSSSCEEEEETT-----
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----cEEEEeCCc--eeeecc---CCCccccccEEEEEEcCCCCEEEEEcCC-----
Confidence 5689999999999999887664 244563222 222222 1110001123789999999999986432
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce--------EeecC-CC-CCCccceEEEe
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--------QAVKG-IP-KSLSVGQVVWA 192 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~--------~~l~~-~~-~~~~~~~~~~s 192 (715)
..|.+||++++.. ..+.. .. ....+..++||
T Consensus 151 ---------------------------------------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS 191 (588)
T 2j04_A 151 ---------------------------------------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY 191 (588)
T ss_dssp ---------------------------------------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE
T ss_pred ---------------------------------------CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc
Confidence 6699999988853 33310 01 12357789999
Q ss_pred cCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc----eecC-CCCcccccee
Q 005093 193 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV----VNLT-ESISSAFFPR 267 (715)
Q Consensus 193 pdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~lt-~~~~~~~~~~ 267 (715)
||| - ++... +..++.+|+ +++.. +.+. .+...+...+
T Consensus 192 Pdg-L----aass~----------------D~tVrlWd~-----------------~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 192 EDV-L----VAALS----------------NNSVFSMTV-----------------SASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp TTE-E----EEEET----------------TCCEEEECC-----------------CSSSSCCCEEEEECCCSSCCCCEE
T ss_pred CCc-E----EEEeC----------------CCeEEEEEC-----------------CCCccccceeeecccccCcEEEEE
Confidence 999 6 66543 225777776 44443 2342 4456789999
Q ss_pred EcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCcc--ccCCC
Q 005093 268 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW--LSDGC 345 (715)
Q Consensus 268 ~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~dg~ 345 (715)
|| |+.|+-++. ..|.++|+.++....+..+ +...+..++| +||+.
T Consensus 234 Fs--g~~LASa~~------------~tIkLWd~~~~~~~~~~~g-------------------h~~~V~~va~~~s~d~~ 280 (588)
T 2j04_A 234 IV--DYKVVLTCP------------GYVHKIDLKNYSISSLKTG-------------------SLENFHIIPLNHEKEST 280 (588)
T ss_dssp EE--TTEEEEECS------------SEEEEEETTTTEEEEEECS-------------------CCSCCCEEEETTCSSCE
T ss_pred EE--CCEEEEEeC------------CeEEEEECCCCeEEEEEcC-------------------CCceEEEEEeeeCCCCC
Confidence 99 678876652 2488899887554222101 1124556678 88986
Q ss_pred EEEEEeeeCCeeEEEEEE
Q 005093 346 TMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 346 ~l~~~~~~~~~~~l~~~d 363 (715)
.+.++.+.|. +||.+|
T Consensus 281 -~La~a~edG~-klw~~d 296 (588)
T 2j04_A 281 -ILLMSNKTSY-KVLLED 296 (588)
T ss_dssp -EEEECSSCEE-EEEESS
T ss_pred -EEEEEcCCCC-EEEeec
Confidence 4555555666 777754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-06 Score=88.38 Aligned_cols=144 Identities=9% Similarity=-0.023 Sum_probs=89.9
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|.+||+++++...+........+..++|+|||+. |+..+ .+..|.++|+
T Consensus 149 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~----lasg~---------------~dg~i~iwd~---------- 199 (343)
T 3lrv_A 149 GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL----LALYS---------------PDGILDVYNL---------- 199 (343)
T ss_dssp CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE----EEEEC---------------TTSCEEEEES----------
T ss_pred CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE----EEEEc---------------CCCEEEEEEC----------
Confidence 569999999988755421222335778999999986 55433 2236888887
Q ss_pred hhhccCCCCCCc--eecCC-CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC-Ccccceeeeee
Q 005093 242 ELKESSSEDLPV--VNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIP 317 (715)
Q Consensus 242 ~~~~~~~~~~~~--~~lt~-~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~ 317 (715)
.+++. ..+.. +...+....|||||++|+..+.. .|.++|+.+.+.. .+..-..
T Consensus 200 -------~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~------------~v~iwd~~~~~~~~~~~~~~~---- 256 (343)
T 3lrv_A 200 -------SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ------------TVVCFDLRKDVGTLAYPTYTI---- 256 (343)
T ss_dssp -------SCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS------------BEEEEETTSSTTCBSSCCCBC----
T ss_pred -------CCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC------------eEEEEEcCCCCcceeeccccc----
Confidence 44443 35555 56778999999999998877722 4888998775532 1111000
Q ss_pred ceecCCCCCccccccCCCC--CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 005093 318 VVQCAEGDCFPGLYSSSIL--SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 370 (715)
Q Consensus 318 ~~~~~~~~~~~g~~~~~~~--~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 370 (715)
.. .... .++|+|+|+.++..+..++..++|.++.......
T Consensus 257 -------~~------~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 257 -------PE------FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp ------------------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred -------cc------ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence 00 0112 3789999996655444366677777765444433
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-07 Score=95.71 Aligned_cols=263 Identities=7% Similarity=-0.113 Sum_probs=141.0
Q ss_pred ceEEEEEEEeecCCCC--ccccccCCCccccccceEEeeCCCCc-eEEEEecCCCCCCeEEEEe-c-CCccEEEEecCcc
Q 005093 14 RKKFMLSTVISKENEN--SVTFQWAPFPVEMTGASAVVPSPSGS-KLLVVRNPENESPIQFELW-S-QSQLEKEFHVPQT 88 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Spdg~-~la~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 88 (715)
....|+++++...... ...+. .....+...+|||||+ .|+.....+ ...+| . .+.....+.. ..
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~-~~ 99 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSL-----RYKHPLLCCNFIDNTDLQIYVGTVQG-----EILKVDLIGSPSFQALTN-NE 99 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEE-----ECSSCEEEEEEEESSSEEEEEEETTS-----CEEEECSSSSSSEEECBS-CC
T ss_pred CCCeEEEEEeCCCCccccceeee-----ecCCceEEEEECCCCCcEEEEEcCCC-----eEEEEEeccCCceEeccc-cC
Confidence 4456777777766411 12121 2236689999999999 888765442 23344 3 3322221111 00
Q ss_pred ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEE
Q 005093 89 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 168 (715)
Q Consensus 89 ~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (715)
.. ..+..+.|+| ++.|+..+. ...|.+||
T Consensus 100 ~~------~~v~~l~~~~-~~~l~s~~~--------------------------------------------d~~i~iwd 128 (342)
T 1yfq_A 100 AN------LGICRICKYG-DDKLIAASW--------------------------------------------DGLIEVID 128 (342)
T ss_dssp CC------SCEEEEEEET-TTEEEEEET--------------------------------------------TSEEEEEC
T ss_pred CC------CceEEEEeCC-CCEEEEEcC--------------------------------------------CCeEEEEc
Confidence 11 1237899999 887776532 25689999
Q ss_pred ccC---------CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 169 INS---------GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 169 ~~~---------g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
+.+ ++.... ......+..+.|+|++ ++... ....|.++|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~------l~~~~---------------~d~~i~i~d~-------- 177 (342)
T 1yfq_A 129 PRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR------LIVGM---------------NNSQVQWFRL-------- 177 (342)
T ss_dssp HHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE------EEEEE---------------STTEEEEEES--------
T ss_pred ccccccccccccCCeeeE--EeeCCceEEEEecCCc------EEEEe---------------CCCeEEEEEC--------
Confidence 876 543332 2234456788898865 33333 2236888887
Q ss_pred hhhhhccCCCC-CCc---eecCCCCccccceeEcC-CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceee
Q 005093 240 ELELKESSSED-LPV---VNLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 314 (715)
Q Consensus 240 ~~~~~~~~~~~-~~~---~~lt~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~ 314 (715)
.. +.. .........+..+.|+| ||+.|+..+.+. .+.++++...+..........
T Consensus 178 ---------~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-----------~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 178 ---------PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG-----------RVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp ---------SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS-----------EEEEEECCTTCCSTTCTTCEE
T ss_pred ---------CccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC-----------cEEEEEEcCCCccccccccee
Confidence 33 221 13334455688899999 999888776542 366666655410000000000
Q ss_pred eeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeEEEeecCCEEEE
Q 005093 315 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIA 393 (715)
Q Consensus 315 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~~~~~l~~ 393 (715)
.. ..........+...+..+.|+|+++.|+ +...++ .|..+|+.+++........ . .....+++++..|+.
T Consensus 238 -~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~l~s 309 (342)
T 1yfq_A 238 -FR---CHRLNLKDTNLAYPVNSIEFSPRHKFLY-TAGSDG--IISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCL 309 (342)
T ss_dssp -EE---CCCCCTTCCSSCCCEEEEEECTTTCCEE-EEETTS--CEEEEETTTTEEEEECCCCSS-SEEEEEEECSSEEEE
T ss_pred -ee---cccccccccccceeEEEEEEcCCCCEEE-EecCCc--eEEEEcCccHhHhhhhhcccC-CCceEecCCCCeEEE
Confidence 00 0000000000011345678999998654 444343 5667788888866554432 2 122333477777666
Q ss_pred EEeC
Q 005093 394 VSSS 397 (715)
Q Consensus 394 ~~~~ 397 (715)
....
T Consensus 310 ~s~D 313 (342)
T 1yfq_A 310 ATSD 313 (342)
T ss_dssp EEEC
T ss_pred EecC
Confidence 5543
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.85 E-value=5.6e-09 Score=106.44 Aligned_cols=211 Identities=14% Similarity=0.115 Sum_probs=112.6
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHH-HHHHHcCCCCCce
Q 005093 483 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANPSK 561 (715)
Q Consensus 483 ~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i-~~l~~~~~~d~~~ 561 (715)
.|+++||.+.......|..++..|. .++.|+++|++| +|.+... ........++++.+.+ +.+... ....+
T Consensus 91 ~l~~~hg~g~~~~~~~~~~l~~~L~-~~~~v~~~d~~G---~g~~~~~--~~~~~~~~~~~~a~~~~~~i~~~--~~~~p 162 (319)
T 2hfk_A 91 VLVGCTGTAANGGPHEFLRLSTSFQ-EERDFLAVPLPG---YGTGTGT--GTALLPADLDTALDAQARAILRA--AGDAP 162 (319)
T ss_dssp EEEEECCCCTTCSTTTTHHHHHTTT-TTCCEEEECCTT---CCBC-----CBCCEESSHHHHHHHHHHHHHHH--HTTSC
T ss_pred cEEEeCCCCCCCcHHHHHHHHHhcC-CCCceEEecCCC---CCCCccc--ccCCCCCCHHHHHHHHHHHHHHh--cCCCC
Confidence 7999997211112446677777775 789999999999 4432000 0001112244443332 222222 12467
Q ss_pred EEEEEeChhHHHHHHHHhhC----CCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhH---HH
Q 005093 562 VTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDL---TR 634 (715)
Q Consensus 562 i~l~G~S~GG~~a~~~a~~~----p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 634 (715)
+.++|||+||.++..+|.+. ++.+++++++++........ ...+. ..+................. ..
T Consensus 163 ~~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~~~~~~~~----~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (319)
T 2hfk_A 163 VVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEP----IEVWS--RQLGEGLFAGELEPMSDARLLAMGR 236 (319)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTSCHH----HHHTH--HHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCCCCCchhH----HHHHH--HHhhHHHHHhhccccchHHHHHHHH
Confidence 99999999999999998876 45688998887653210000 00000 00000000000000011111 11
Q ss_pred HHhcCchhhccCCCCcEEEEeeCCCCcCCchH-HHHHHHHHHHc-CCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 635 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREK-GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 635 ~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~-g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+...........+++|+++++| .|..++... ...+ ... ...++++.++ ++|.....+....+.+.|.+|+++
T Consensus 237 ~~~~~~~~~~~~i~~Pvl~i~g-~D~~~~~~~~~~~~----~~~~~~~~~~~~v~-g~H~~~~~e~~~~~~~~i~~~L~~ 310 (319)
T 2hfk_A 237 YARFLAGPRPGRSSAPVLLVRA-SEPLGDWQEERGDW----RAHWDLPHTVADVP-GDHFTMMRDHAPAVAEAVLSWLDA 310 (319)
T ss_dssp HHHHHHSCCCCCCCSCEEEEEE-SSCSSCCCGGGCCC----SCCCSSCSEEEEES-SCTTHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCCCEEEEEc-CCCCCCccccccch----hhcCCCCCEEEEeC-CCcHHHHHHhHHHHHHHHHHHHHh
Confidence 1110000123678899999999 999888764 2222 221 2347888998 488743322566788889999876
Q ss_pred h
Q 005093 713 Y 713 (715)
Q Consensus 713 ~ 713 (715)
.
T Consensus 311 ~ 311 (319)
T 2hfk_A 311 I 311 (319)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.85 E-value=3.6e-08 Score=99.97 Aligned_cols=237 Identities=14% Similarity=0.109 Sum_probs=128.0
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
..+...+|||||+.|+.....+ ...+| ..++......... + .+..+.|+|+++.|+..+.+...
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~~---~------~v~~~~~~~~~~~l~s~~~d~~i 131 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDK-----TLKIWDVSSGKCLKTLKGHS---N------YVFCCNFNPQSNLIVSGSFDESV 131 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCEEEEEECCS---S------CEEEEEECSSSSEEEEEETTSCE
T ss_pred CceEEEEEcCCCCEEEEECCCC-----EEEEEECCCCcEEEEEcCCC---C------CEEEEEEcCCCCEEEEEeCCCcE
Confidence 5688999999999998775543 34555 3444333332111 1 12689999999988877654432
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCccc-CCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
. .|....................+.|.++ +..+ .......|.+||+.+++............+..+.|+|+|+.
T Consensus 132 ~--iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 206 (312)
T 4ery_A 132 R--IWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-- 206 (312)
T ss_dssp E--EEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE--
T ss_pred E--EEECCCCEEEEEecCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE--
Confidence 1 2222211111111111222334456655 3333 23335789999998877543210223335667899999997
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCc--cccceeEc-CCCCeE
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESIS--SAFFPRFS-PDGKFL 275 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~--~~~~~~~s-pdg~~l 275 (715)
|+... .+..|.++|+ .+++ ...+..... ......++ ++|+.|
T Consensus 207 --l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 207 --ILAAT---------------LDNTLKLWDY-----------------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252 (312)
T ss_dssp --EEEEE---------------TTTEEEEEET-----------------TTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred --EEEEc---------------CCCeEEEEEC-----------------CCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence 76654 2236888887 4443 333333322 12233454 566666
Q ss_pred EEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEee-eC
Q 005093 276 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI-WG 354 (715)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~-~~ 354 (715)
+..+.+ ..|+++|+.+++......+ +...+..++|+|++..++..+. .+
T Consensus 253 ~sg~~d-----------g~i~vwd~~~~~~~~~~~~-------------------h~~~v~~~~~~p~~~~l~s~~~~~d 302 (312)
T 4ery_A 253 VSGSED-----------NLVYIWNLQTKEIVQKLQG-------------------HTDVVISTACHPTENIIASAALEND 302 (312)
T ss_dssp EECCTT-----------SCEEEEETTTCCEEEEECC-------------------CSSCEEEEEECSSSSEEEEEECTTT
T ss_pred EEECCC-----------CEEEEEECCCchhhhhhhc-------------------cCCcEEEEeecCcCCceEEEEccCC
Confidence 544433 2488899877543111000 1112345679999985544432 34
Q ss_pred CeeEEEEE
Q 005093 355 SSQVIISV 362 (715)
Q Consensus 355 ~~~~l~~~ 362 (715)
+...+|..
T Consensus 303 ~~i~~W~~ 310 (312)
T 4ery_A 303 KTIKLWKS 310 (312)
T ss_dssp CCEEEEEC
T ss_pred ccEEEecC
Confidence 55566654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.84 E-value=4.9e-07 Score=94.86 Aligned_cols=249 Identities=12% Similarity=0.081 Sum_probs=140.7
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCc------cEEEEe-cCccccccccCCCcccceeecCC----C-
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQ------LEKEFH-VPQTVHGSVYADGWFEGISWNSD----E- 108 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~wSpD----g- 108 (715)
+.+...+|+| +.|+.....+ ...+| ..++ ...... .... +..+.|+|+ |
T Consensus 17 ~~i~~~~~~~--~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~g~ 79 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCSGDG-----YLKVWDNKLLDNENPKDKSYSHFVHKSG----------LHHVDVLQAIERDAF 79 (397)
T ss_dssp SCEEEEEECS--SEEEEEETTS-----EEEEEESBCCTTCCGGGGEEEEECCTTC----------EEEEEEEEEEETTTE
T ss_pred cCeEEEEecC--CeEEEEcCCC-----EEEEEECCCcccccCCCcceEEecCCCc----------EEEEEEecccccCCc
Confidence 6789999999 5666554432 33445 3333 222222 1222 379999999 8
Q ss_pred --CeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc------eEeecCC
Q 005093 109 --TLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE------VQAVKGI 180 (715)
Q Consensus 109 --~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~------~~~l~~~ 180 (715)
+.|+..+. ...|++|++++++ ...+...
T Consensus 80 ~~~~l~s~~~--------------------------------------------dg~i~iw~~~~~~~~~~~~~~~~~~~ 115 (397)
T 1sq9_A 80 ELCLVATTSF--------------------------------------------SGDLLFYRITREDETKKVIFEKLDLL 115 (397)
T ss_dssp EEEEEEEEET--------------------------------------------TSCEEEEEEEECTTTCCEEEEEECCS
T ss_pred cccEEEEEcC--------------------------------------------CCCEEEEEccCCcccccccceeeccc
Confidence 87776532 2569999998887 5555211
Q ss_pred CC---CCccceEEEe----cCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc
Q 005093 181 PK---SLSVGQVVWA----PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 253 (715)
Q Consensus 181 ~~---~~~~~~~~~s----pdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (715)
.. ...+..+.|+ |+++. +++++..+ ..|+++|+......+. ....
T Consensus 116 ~~~~~~~~v~~~~~~~~~~~~~~~----~l~~~~~d--------------g~i~iwd~~~~~~~~~----------~~~~ 167 (397)
T 1sq9_A 116 DSDMKKHSFWALKWGASNDRLLSH----RLVATDVK--------------GTTYIWKFHPFADESN----------SLTL 167 (397)
T ss_dssp CTTGGGSCEEEEEEECCC----CE----EEEEEETT--------------SCEEEEEEESSSSHHH----------HTTT
T ss_pred ccccCCCcEEEEEEeeccCCCCce----EEEEEeCC--------------CcEEEEeCCccccccc----------ccee
Confidence 11 2567889999 99884 47766322 3577777610000000 1222
Q ss_pred e-----ec-------CCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceec
Q 005093 254 V-----NL-------TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 321 (715)
Q Consensus 254 ~-----~l-------t~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~ 321 (715)
. .+ ......+....|+|+| .|+..+.+ ..|+++|+.+++.... +..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----------g~i~i~d~~~~~~~~~----------~~~ 225 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----------GTVQISELSTLRPLYN----------FES 225 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----------SEEEEEETTTTEEEEE----------EEC
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----------CcEEEEECCCCceeEE----------Eec
Confidence 2 33 2345567889999999 66655443 2488889876432111 000
Q ss_pred CCCCCccccc---cCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC--------------CCCceeEEE
Q 005093 322 AEGDCFPGLY---SSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--------------ESNFSWSLL 384 (715)
Q Consensus 322 ~~~~~~~g~~---~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~--------------~~~~~~~~~ 384 (715)
.. .+ ...+..+.|+|+++.|+..+.+.....|..+|+.+++....... ...+....|
T Consensus 226 ~~------~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 226 QH------SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 299 (397)
T ss_dssp CC---------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred cc------cccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEE
Confidence 00 00 11345678999999776655543336788889988876554432 333445577
Q ss_pred eecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 385 TLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 385 s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+++++.|+.... -..|.+.++.++
T Consensus 300 ~~~~~~l~~~~~----dg~i~iwd~~~~ 323 (397)
T 1sq9_A 300 NDSGETLCSAGW----DGKLRFWDVKTK 323 (397)
T ss_dssp CSSSSEEEEEET----TSEEEEEETTTT
T ss_pred CCCCCEEEEEeC----CCeEEEEEcCCC
Confidence 888876655432 235667776543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.84 E-value=4.2e-07 Score=92.95 Aligned_cols=204 Identities=14% Similarity=0.088 Sum_probs=114.3
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecC--CCCeEEEEeecCC
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEPS 119 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSp--Dg~~la~~~~~~~ 119 (715)
.+.+...+|||||++||..... +.-.+|.+..+....++...-....+ .+..+.|+| |++.|+..+.+
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~d~~~l~s~~~d-- 80 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSD--QHIKVFKLDKDTSNWELSDSWRAHDS------SIVAIDWASPEYGRIIASASYD-- 80 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETT--SEEEEEEECSSSCCEEEEEEEECCSS------CEEEEEECCGGGCSEEEEEETT--
T ss_pred ccceeEEEEcCCCCEEEEeeCC--CeEEEEECCCCCCcceecceeccCCC------cEEEEEEcCCCCCCEEEEEcCC--
Confidence 3678999999999999877554 22233333322222222211111111 237999999 68888775332
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc----------eEeecCCCCCCccceE
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----------VQAVKGIPKSLSVGQV 189 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~l~~~~~~~~~~~~ 189 (715)
..|.+||+++++ ...+ ......+..+
T Consensus 81 ------------------------------------------g~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~ 116 (351)
T 3f3f_A 81 ------------------------------------------KTVKLWEEDPDQEECSGRRWNKLCTL--NDSKGSLYSV 116 (351)
T ss_dssp ------------------------------------------SCEEEEEECTTSCTTSSCSEEEEEEE--CCCSSCEEEE
T ss_pred ------------------------------------------CeEEEEecCCCcccccccCcceeeee--cccCCceeEE
Confidence 568999998763 2333 2334567789
Q ss_pred EEecC--CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eec----------
Q 005093 190 VWAPL--NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL---------- 256 (715)
Q Consensus 190 ~~spd--g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l---------- 256 (715)
.|+|+ ++. |+..+ .+..|.++|+ .+++. ..+
T Consensus 117 ~~~~~~~~~~----l~~~~---------------~dg~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 117 KFAPAHLGLK----LACLG---------------NDGILRLYDA-----------------LEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp EECCGGGCSE----EEEEE---------------TTCEEEEEEC-----------------SSTTCTTCCEEEEEEESCS
T ss_pred EEcCCCCCcE----EEEec---------------CCCcEEEecC-----------------CChHHhccccccccccccc
Confidence 99999 876 66544 2236777776 22221 111
Q ss_pred ---CCCCccccceeEcCC---CCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccc
Q 005093 257 ---TESISSAFFPRFSPD---GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 330 (715)
Q Consensus 257 ---t~~~~~~~~~~~spd---g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~ 330 (715)
...........|+|+ ++.|+..+.+. .+...+...+....+. . . .+
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~-------~---~------~~- 212 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----------AIIYQRGKDGKLHVAA-------K---L------PG- 212 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----------EEEEEECTTSCEEEEE-------E---C------CC-
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCC-----------cEEEEccCCCceeeee-------e---c------CC-
Confidence 123345778899998 88777666542 2333333332211010 0 0 00
Q ss_pred ccCCCCCCccccCCC---EEEEEeeeCCeeEEEEEE
Q 005093 331 YSSSILSNPWLSDGC---TMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 331 ~~~~~~~~~~~~dg~---~l~~~~~~~~~~~l~~~d 363 (715)
+...+..+.|+|++. .++++...++...+|.+.
T Consensus 213 h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 112345678999983 466777767766676655
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.9e-07 Score=93.48 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=74.6
Q ss_pred cccccceEEeeCCC---CceEEEEecCCCCCCeEEEEecCCccE-EEEe-cCccccccccCCCcccceeecCCCCeEEEE
Q 005093 40 VEMTGASAVVPSPS---GSKLLVVRNPENESPIQFELWSQSQLE-KEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYV 114 (715)
Q Consensus 40 ~~~~~~~~~~~Spd---g~~la~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~wSpDg~~la~~ 114 (715)
.+.+.+...+|||| |+.|+..... +.-.+|.+...+... .... .... +..+.|+|||++|+..
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWA--NDVRCWEVQDSGQTIPKAQQMHTGP----------VLDVCWSDDGSKVFTA 104 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETT--SEEEEEEECTTSCEEEEEEEECSSC----------EEEEEECTTSSEEEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCC--CcEEEEEcCCCCceeEEEeccccCC----------EEEEEECcCCCEEEEE
Confidence 34477999999999 5888776554 222233332323332 2222 2222 2799999999998875
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEE--e
Q 005093 115 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW--A 192 (715)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~--s 192 (715)
+. ...|.+||+++++...+ ......+..+.| +
T Consensus 105 ~~--------------------------------------------dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~ 138 (368)
T 3mmy_A 105 SC--------------------------------------------DKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKA 138 (368)
T ss_dssp ET--------------------------------------------TSEEEEEETTTTEEEEE--EECSSCEEEEEEEEC
T ss_pred cC--------------------------------------------CCcEEEEEcCCCCceee--ccccCceEEEEEEeC
Confidence 32 26799999999987776 344456778899 8
Q ss_pred cCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEec
Q 005093 193 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 231 (715)
Q Consensus 193 pdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 231 (715)
|+++. |+... .+..|.++|+
T Consensus 139 ~~~~~----l~~~~---------------~dg~i~vwd~ 158 (368)
T 3mmy_A 139 PNYSC----VMTGS---------------WDKTLKFWDT 158 (368)
T ss_dssp SSCEE----EEEEE---------------TTSEEEEECS
T ss_pred CCCCE----EEEcc---------------CCCcEEEEEC
Confidence 88886 55544 2236777776
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-07 Score=97.89 Aligned_cols=205 Identities=11% Similarity=0.096 Sum_probs=120.2
Q ss_pred cccceEEeeCCC--CceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCC--CCeEEEEeec
Q 005093 42 MTGASAVVPSPS--GSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEE 117 (715)
Q Consensus 42 ~~~~~~~~~Spd--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpD--g~~la~~~~~ 117 (715)
.+.+...+|||+ ++.|+..... +.-.+|.+ ..++...+..... ... .+..+.|+|+ |+.|+..+.
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~d--g~v~iwd~-~~~~~~~~~~~~~-~~~------~v~~~~~~~~~~~~~l~~~~~- 123 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYD--GKVLIWKE-ENGRWSQIAVHAV-HSA------SVNSVQWAPHEYGPLLLVASS- 123 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETT--SCEEEEEE-ETTEEEEEEEECC-CSS------CEEEEEECCGGGCSEEEEEET-
T ss_pred CCcEEEEEeCCCCCCCEEEEeccC--CEEEEEEc-CCCceeEeeeecC-CCc------ceEEEEeCCCCCCCEEEEecC-
Confidence 367899999988 8888876554 32233332 3343222222211 111 2379999999 888877532
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce---EeecCCCCCCccceEEEec-
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAP- 193 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---~~l~~~~~~~~~~~~~~sp- 193 (715)
...|.+||+.++.. ..+ ......+..+.|+|
T Consensus 124 -------------------------------------------d~~i~v~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 124 -------------------------------------------DGKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPA 158 (379)
T ss_dssp -------------------------------------------TSEEEEEECCTTSCCCEEEE--ECCTTCEEEEEECCC
T ss_pred -------------------------------------------CCcEEEEecCCCCceeeEEe--cCCCCceEEEEEcCc
Confidence 25689999987732 223 23344677899999
Q ss_pred ------------CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-----ceec
Q 005093 194 ------------LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----VVNL 256 (715)
Q Consensus 194 ------------dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l 256 (715)
|++. |+... .+..|.++|+ .++. ...+
T Consensus 159 ~~~~~~~~~~~~~~~~----l~~~~---------------~dg~i~i~d~-----------------~~~~~~~~~~~~~ 202 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRK----FVTGG---------------ADNLVKIWKY-----------------NSDAQTYVLESTL 202 (379)
T ss_dssp C----------CTTCE----EEEEE---------------TTSCEEEEEE-----------------ETTTTEEEEEEEE
T ss_pred cccccccccCCCCCCE----EEEEe---------------CCCeEEEEEe-----------------cCCCcceeeEEEE
Confidence 5775 55544 2235777775 2222 1344
Q ss_pred CCCCccccceeEcCC---CCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccC
Q 005093 257 TESISSAFFPRFSPD---GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 333 (715)
Q Consensus 257 t~~~~~~~~~~~spd---g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~ 333 (715)
..+...+..++|+|| |+.|+..+.+. .|.++|+.++...... .+... . .+..
T Consensus 203 ~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~-------~~~~~---~----~~~~ 257 (379)
T 3jrp_A 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDR-----------TCIIWTQDNEQGPWKK-------TLLKE---E----KFPD 257 (379)
T ss_dssp CCCSSCEEEEEECCCCSSSEEEEEEETTS-----------CEEEEEESSTTSCCEE-------EESSS---S----CCSS
T ss_pred ecccCcEeEEEECCCCCCCCeEEEEeCCC-----------EEEEEeCCCCCcccee-------eeecc---c----cCCC
Confidence 555667889999999 77777666542 3778887765421100 00000 0 0111
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 005093 334 SILSNPWLSDGCTMLLSSIWGSSQVIISVNV 364 (715)
Q Consensus 334 ~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~ 364 (715)
.+..+.|+|||+.|+.. ..++...+|.++.
T Consensus 258 ~v~~~~~s~~g~~l~~~-~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 258 VLWRASWSLSGNVLALS-GGDNKVTLWKENL 287 (379)
T ss_dssp CEEEEEECSSSCCEEEE-ESSSSEEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEe-cCCCcEEEEeCCC
Confidence 34567899999866544 4466677777764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-07 Score=97.04 Aligned_cols=240 Identities=8% Similarity=0.028 Sum_probs=134.2
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEec--CccccccccCCCcccceeecCC---CCeEEEEe
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSD---ETLIAYVA 115 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~wSpD---g~~la~~~ 115 (715)
+.+...+|||||+.++.....+ .......+| .+++...+... ...+ ..+.|+|+ |+.|+..+
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFA-RGTGVIQLYEIQHGDLKLLREIEKAKPI----------KCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEESSCE----------EEEECTTCCTTTCCEEEEE
T ss_pred CceEEEEEcCCCceEEEecCcc-CCCcEEEEEeCCCCcccceeeecccCcE----------EEEEEcCCCCCCceEEEec
Confidence 5689999999999888775431 111334455 44444433322 2222 79999999 67777653
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc--eEeecCCCCCCccceE----
Q 005093 116 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQV---- 189 (715)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~--~~~l~~~~~~~~~~~~---- 189 (715)
. ...|.+||+.+++ ...+ ......+..+
T Consensus 88 ~--------------------------------------------dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~ 121 (357)
T 3i2n_A 88 F--------------------------------------------GGNLHIWNLEAPEMPVYSV--KGHKEIINAIDGIG 121 (357)
T ss_dssp T--------------------------------------------TSCEEEECTTSCSSCSEEE--CCCSSCEEEEEEES
T ss_pred C--------------------------------------------CCeEEEEeCCCCCccEEEE--EecccceEEEeecc
Confidence 2 2568999998776 3444 2233345555
Q ss_pred --EEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC--CceecCCCCc----
Q 005093 190 --VWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESIS---- 261 (715)
Q Consensus 190 --~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lt~~~~---- 261 (715)
+|+||++. |+... .+..|.++|+ ..+ ....+....+
T Consensus 122 ~~~~s~~~~~----l~~~~---------------~d~~i~vwd~-----------------~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 122 GLGIGEGAPE----IVTGS---------------RDGTVKVWDP-----------------RQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp GGGCC-CCCE----EEEEE---------------TTSCEEEECT-----------------TSCSSCSEEECCCTTSCCC
T ss_pred ccccCCCccE----EEEEe---------------CCCeEEEEeC-----------------CCCCCcceeccccCCCCCC
Confidence 45789987 66554 2236888886 333 2344433222
Q ss_pred ccccee----EcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCC
Q 005093 262 SAFFPR----FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 337 (715)
Q Consensus 262 ~~~~~~----~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 337 (715)
.+.... |+|+|+.|+..+.+. .|+++|+.+++...... ....+..
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~--------------------~~~~v~~ 214 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNG-----------DIKLFDLRNMALRWETN--------------------IKNGVCS 214 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTS-----------EEEEEETTTTEEEEEEE--------------------CSSCEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCC-----------eEEEEECccCceeeecC--------------------CCCceEE
Confidence 334444 899999888776542 48889987755321110 0113456
Q ss_pred Ccccc---CCCEEEEEeeeCCeeEEEEEECCCCcEE------EecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 005093 338 NPWLS---DGCTMLLSSIWGSSQVIISVNVSSGELL------RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 408 (715)
Q Consensus 338 ~~~~~---dg~~l~~~~~~~~~~~l~~~d~~tg~~~------~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~ 408 (715)
+.|+| +++.++. ...++...+| |+.+++.. .+......+....|++++..++++.+.-. .|.+.+
T Consensus 215 ~~~~~~~~~~~~l~~-~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd 288 (357)
T 3i2n_A 215 LEFDRKDISMNKLVA-TSLEGKFHVF--DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG---GLHLWK 288 (357)
T ss_dssp EEESCSSSSCCEEEE-EESTTEEEEE--EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS---EEEEEE
T ss_pred EEcCCCCCCCCEEEE-ECCCCeEEEE--eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC---cEEEee
Confidence 67998 8875544 4545544555 44333211 11133333444577887765655554332 466666
Q ss_pred eccc
Q 005093 409 FVDK 412 (715)
Q Consensus 409 ~~~~ 412 (715)
+...
T Consensus 289 ~~~~ 292 (357)
T 3i2n_A 289 YEYP 292 (357)
T ss_dssp EECC
T ss_pred cCCC
Confidence 6543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.3e-06 Score=87.71 Aligned_cols=261 Identities=13% Similarity=0.075 Sum_probs=140.2
Q ss_pred ccccceEEeeCC-CCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCC---eEEEE
Q 005093 41 EMTGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET---LIAYV 114 (715)
Q Consensus 41 ~~~~~~~~~~Sp-dg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~---~la~~ 114 (715)
..+.+...+|+| +++.|+.....+ ...+| .+++........... ..+.|+|++. .|+..
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 162 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDK-----TLKVWDTNTLQTADVFNFEETV----------YSHHMSPVSTKHCLVAVG 162 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTS-----EEEEEETTTTEEEEEEECSSCE----------EEEEECSSCSSCCEEEEE
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCC-----eEEEeeCCCCccceeccCCCce----------eeeEeecCCCCCcEEEEE
Confidence 336689999999 666666554332 34555 455555555443333 6788888543 55553
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecC
Q 005093 115 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 194 (715)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spd 194 (715)
.. ...|.+||+.+++..... ......+..+.|+|+
T Consensus 163 ~~--------------------------------------------~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 163 TR--------------------------------------------GPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPR 197 (408)
T ss_dssp ES--------------------------------------------SSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSS
T ss_pred cC--------------------------------------------CCeEEEEeCCCcceeeee-cCCCCcEEEEEECCC
Confidence 22 256999999887654331 334446778999999
Q ss_pred CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCe
Q 005093 195 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 274 (715)
Q Consensus 195 g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~ 274 (715)
++. +++++..+ ..|.++|+......-..+.....................+....|+|||+.
T Consensus 198 ~~~----ll~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (408)
T 4a11_B 198 YDY----ILATASAD--------------SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259 (408)
T ss_dssp CTT----EEEEEETT--------------SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred CCc----EEEEEcCC--------------CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence 998 77776332 357777761000000000000000000001111334556788999999999
Q ss_pred EEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccc-cCCCEEEEEeee
Q 005093 275 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIW 353 (715)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~dg~~l~~~~~~ 353 (715)
|+..+.+. .|.++|+.+++.......... ... .....+.+. ..+..+++...
T Consensus 260 l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~---------~~~------~~~~~~~~~~~~~~~~~~~~~- 312 (408)
T 4a11_B 260 LLTVGTDN-----------RMRLWNSSNGENTLVNYGKVC---------NNS------KKGLKFTVSCGCSSEFVFVPY- 312 (408)
T ss_dssp EEEEETTS-----------CEEEEETTTCCBCCCCCCCCC---------CCC------SSCCCCEECCSSSSCEEEEEE-
T ss_pred EEEecCCC-----------eEEEEECCCCccceecccccc---------ccc------cccceeEEecCCCceEEEEec-
Confidence 98776552 488889887654322111000 000 001111121 22333444433
Q ss_pred CCeeEEEEEECCCCcEEEecC-CCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 354 GSSQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 354 ~~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+ ..+..+|+.+++...... ....+....|++++..|+....+ ..|.+.++.+.
T Consensus 313 ~--~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~ 366 (408)
T 4a11_B 313 G--STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD----CNILAWVPSLY 366 (408)
T ss_dssp T--TEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT----SCEEEEEECC-
T ss_pred C--CEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC----CeEEEEeCCCC
Confidence 3 367778988888666544 33345556788888776644322 24666666544
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-09 Score=112.20 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=77.1
Q ss_pred CCCCcEEEEEcCCCCCCCCccchH-HHHHH-HhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSK-SLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 555 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~-~~~~l-a~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~ 555 (715)
+...|+||++||..... ...|.. ++..| +..+|.|+++|++| +|.+.......+ .....+++.+++++|.++.
T Consensus 66 ~~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g---~g~s~y~~~~~~-~~~v~~~la~ll~~L~~~~ 140 (449)
T 1hpl_A 66 NTGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKS---GSRTAYSQASQN-VRIVGAEVAYLVGVLQSSF 140 (449)
T ss_dssp CTTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHH---HHSSCHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCc---ccCCccHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 34579999999955432 234554 44554 56799999999998 333211000000 0011346667777776443
Q ss_pred CCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 556 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 556 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
.++.+++.|+||||||.+|..++.++|+++++++++.|..
T Consensus 141 g~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa~ 180 (449)
T 1hpl_A 141 DYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAE 180 (449)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCccc
Confidence 3567899999999999999999999999999999888754
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-08 Score=105.82 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=74.0
Q ss_pred CCCcEEEEEcCCCCCCCCccc--hHHHHHH-HhCCcEEEEEcCCCCCCCchhhhhc--C---CCCCC----ccchhhHHH
Q 005093 479 SCDPLIVVLHGGPHSVSLSSY--SKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQS--L---PGKVG----SQDVNDVLT 546 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~--~~~~~~l-a~~G~~vi~~d~rG~~~~g~~~~~~--~---~~~~~----~~~~~d~~~ 546 (715)
...| ||++|||.+.... .+ ......+ .+.|+.|+++|+|| ||++.... . ..+.. ...++|+..
T Consensus 37 ~g~P-i~l~~Ggeg~~~~-~~~~~g~~~~lA~~~~~~Vi~~DhRg---~G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~ 111 (446)
T 3n2z_B 37 NGGS-ILFYTGNEGDIIW-FCNNTGFMWDVAEELKAMLVFAEHRY---YGESLPFGDNSFKDSRHLNFLTSEQALADFAE 111 (446)
T ss_dssp TTCE-EEEEECCSSCHHH-HHHHCHHHHHHHHHHTEEEEEECCTT---STTCCTTGGGGGSCTTTSTTCSHHHHHHHHHH
T ss_pred CCCC-EEEEeCCCCcchh-hhhcccHHHHHHHHhCCcEEEEecCC---CCCCCCCCccccccchhhccCCHHHHHHHHHH
Confidence 3456 5667887765311 11 1223334 34589999999999 66653211 0 11222 223678888
Q ss_pred HHHHHHHcC-CCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCc
Q 005093 547 AIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594 (715)
Q Consensus 547 ~i~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 594 (715)
.++++.... .....++.++||||||.++++++.++|+++.++|+.+++
T Consensus 112 ~~~~l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssap 160 (446)
T 3n2z_B 112 LIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAP 160 (446)
T ss_dssp HHHHHHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCC
T ss_pred HHHHHHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEeccc
Confidence 888887652 234468999999999999999999999999999987653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-07 Score=107.41 Aligned_cols=232 Identities=12% Similarity=0.119 Sum_probs=135.3
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCC--CCeEEEEeec
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEE 117 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpD--g~~la~~~~~ 117 (715)
.+.+...+|||||++|+..... + ...+| .++....+..+. +..+ .+..+.|+|+ |+.|+..+.+
T Consensus 9 ~~~V~~l~~s~dg~~latg~~d--g---~I~vwd~~~~~~~~~~~l~-~h~~------~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSD--K---TIKIFEVEGETHKLIDTLT-GHEG------PVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETT--T---EEEEEEEETTEEEEEEEEC-CCSS------CEEEEEECCTTSCSEEEEEETT
T ss_pred cceeEEEEECCCCCeEEEEECC--C---cEEEEecCCCCCccceecc-CCcC------ceEEEEecCCCCCCEEEEEeCC
Confidence 3678999999999999877554 2 33444 222222222221 1112 2378999998 8888775432
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec-CCCCCCccceEEEecC--
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPL-- 194 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~-~~~~~~~~~~~~~spd-- 194 (715)
..|.+||+.+++...+. -......+..+.|+|+
T Consensus 77 --------------------------------------------g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~ 112 (753)
T 3jro_A 77 --------------------------------------------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY 112 (753)
T ss_dssp --------------------------------------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG
T ss_pred --------------------------------------------CeEEEEECCCCcccccccccCCCCCeEEEEECCCCC
Confidence 56999999998632221 0334456888999999
Q ss_pred CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC---CceecCCCCccccceeEcC-
Q 005093 195 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSP- 270 (715)
Q Consensus 195 g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~~~~sp- 270 (715)
|+. ++..+ .+..|.++|+ ..+ ....+......+....|+|
T Consensus 113 ~~~----l~sgs---------------~dg~I~vwdl-----------------~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 113 GPL----LLVAS---------------SDGKVSVVEF-----------------KENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp CSE----EEEEE---------------TTSEEEEEEC-----------------CSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred CCE----EEEEe---------------CCCcEEEEEe-----------------ecCCCcceeEeecCCCceEEEEecCc
Confidence 775 55544 2346778886 333 2334455666788899999
Q ss_pred ------------CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCC
Q 005093 271 ------------DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 338 (715)
Q Consensus 271 ------------dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 338 (715)
||+.|+..+.+. .|.++|+.++.... ....... .+...+..+
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg-----------~I~iwd~~~~~~~~------~~~~~~~---------~h~~~V~~l 210 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADN-----------LVKIWKYNSDAQTY------VLESTLE---------GHSDWVRDV 210 (753)
T ss_dssp C---------CGGGCCEEEEETTS-----------CEEEEEEETTTTEE------EEEEEEC---------CCSSCEEEE
T ss_pred ccccccccccCCCCCEEEEEECCC-----------eEEEEeccCCcccc------eeeeeec---------CCCCcEEEE
Confidence 588887766553 37788876643210 0000000 011234567
Q ss_pred ccccC---CCEEEEEeeeCCeeEEEEEECCCCcE---EEecC---CCCCceeEEEeecCCEEEEE
Q 005093 339 PWLSD---GCTMLLSSIWGSSQVIISVNVSSGEL---LRITP---AESNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 339 ~~~~d---g~~l~~~~~~~~~~~l~~~d~~tg~~---~~l~~---~~~~~~~~~~s~~~~~l~~~ 394 (715)
.|+|+ ++ ++++...++...+| |+.+++. ..+.. ....+....|++++..++..
T Consensus 211 ~~sp~~~~~~-~l~s~s~Dg~I~iw--d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 211 AWSPTVLLRS-YLASVSQDRTCIIW--TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (753)
T ss_dssp EECCCCSSSE-EEEEEESSSCEEEE--EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred EeccCCCCCC-EEEEEecCCEEEEe--cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence 89999 65 55666656655555 5555431 11111 22233445788888766543
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.1e-09 Score=109.58 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=80.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCc---EEEEEcCCCCCCCchhh-------------hh-----c------
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY---SLLIVNYRGSLGFGEEA-------------LQ-----S------ 531 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~---~vi~~d~rG~~~~g~~~-------------~~-----~------ 531 (715)
...|.||++||.+.. ...|..++..|+++|| .|+++|++| +|.+. .. .
T Consensus 20 ~~~ppVVLlHG~g~s--~~~w~~la~~La~~Gy~~~~Via~DlpG---~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~~ 94 (484)
T 2zyr_A 20 EDFRPVVFVHGLAGS--AGQFESQGMRFAANGYPAEYVKTFEYDT---ISWALVVETDMLFSGLGSEFGLNISQIIDPET 94 (484)
T ss_dssp -CCCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEEECCCH---HHHHHHTTTSTTTTTGGGHHHHHHGGGSCHHH
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHHHHHcCCCcceEEEEECCC---CCcccccccccccccccccccccccccccccc
Confidence 456779999996554 5678889999999999 799999998 55430 00 0
Q ss_pred -----CCC--CCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCC---CceeEEEecCCcch
Q 005093 532 -----LPG--KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 596 (715)
Q Consensus 532 -----~~~--~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~~ 596 (715)
... .......+++.+.++.+.+.. ..+++.|+||||||.+++.++.++| ++++++|+++|...
T Consensus 95 l~~v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 95 LDKILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred ccccccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 000 001123567777777777763 3478999999999999999999887 48999999998654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-07 Score=99.88 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=89.7
Q ss_pred ceEEEEEccCCc----eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 162 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 162 ~~l~~~~~~~g~----~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
..|++||+.++. ...+ ......+..++|+|+++. ++.++.. ...|.++|+.
T Consensus 254 g~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~~p~~~~----~l~tg~~--------------dg~v~vwd~~----- 308 (430)
T 2xyi_A 254 QKLMIWDTRNNNTSKPSHTV--DAHTAEVNCLSFNPYSEF----ILATGSA--------------DKTVALWDLR----- 308 (430)
T ss_dssp SEEEEEETTCSCSSSCSEEE--ECCSSCEEEEEECSSCTT----EEEEEET--------------TSEEEEEETT-----
T ss_pred CeEEEEECCCCCCCcceeEe--ecCCCCeEEEEeCCCCCC----EEEEEeC--------------CCeEEEEeCC-----
Confidence 679999998763 2233 233446778999999998 7777632 2368888871
Q ss_pred hhhhhhhccCCC-CCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccc-eeee
Q 005093 238 ASELELKESSSE-DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK-IVDV 315 (715)
Q Consensus 238 ~~~~~~~~~~~~-~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~-~~~~ 315 (715)
. ......+......+....|+|+|+.++.+...+ ..|.++|+...+....... .+..
T Consensus 309 -----------~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~ 367 (430)
T 2xyi_A 309 -----------NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD----------RRLHVWDLSKIGEEQSTEDAEDGP 367 (430)
T ss_dssp -----------CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT----------SCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred -----------CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC----------CcEEEEeCCCCccccCccccccCC
Confidence 2 233455666677789999999998766555443 2477888766332111000 0000
Q ss_pred eeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 005093 316 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 316 ~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d 363 (715)
..+... +. .+...+..+.|+|++..++++....+...+|.++
T Consensus 368 ~~~~~~-----~~-~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 368 PELLFI-----HG-GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TTEEEE-----CC-CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cceEEE-----cC-CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 000000 00 0112356778999998677777767766777664
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4e-07 Score=92.45 Aligned_cols=231 Identities=9% Similarity=0.052 Sum_probs=122.7
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCC--CCeEEEEeec
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEE 117 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpD--g~~la~~~~~ 117 (715)
.+.+...+|||||++||-.... + ...+| ..+....+..+. +..+. +..+.|+|+ |+.|+-.+.+
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D--~---~v~lwd~~~~~~~~~~~l~-gH~~~------V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSD--R---SVKIFDVRNGGQILIADLR-GHEGP------VWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETT--T---EEEEEEEETTEEEEEEEEE-CCSSC------EEEEEECCGGGSSCEEEEETT
T ss_pred cCeEEEeeEcCCCCEEEEEeCC--C---eEEEEEecCCCcEEEEEEc-CCCcc------EEEEEeCCCCCCCEEEEEECC
Confidence 3668999999999999876544 2 33444 233322222221 11122 278999874 7777765322
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce---EeecCCCCCCccceEEEecC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPL 194 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---~~l~~~~~~~~~~~~~~spd 194 (715)
..|.+||+.+++. ..+ ......+..++|+||
T Consensus 81 --------------------------------------------~~v~iWd~~~~~~~~~~~~--~~h~~~V~~v~~~p~ 114 (316)
T 3bg1_A 81 --------------------------------------------RKVIIWREENGTWEKSHEH--AGHDSSVNSVCWAPH 114 (316)
T ss_dssp --------------------------------------------SCEEEECCSSSCCCEEEEE--CCCSSCCCEEEECCT
T ss_pred --------------------------------------------CEEEEEECCCCcceEEEEc--cCCCCceEEEEECCC
Confidence 5588999988742 223 223346778999998
Q ss_pred --CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-Cc---eecCCCCccccceeE
Q 005093 195 --NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PV---VNLTESISSAFFPRF 268 (715)
Q Consensus 195 --g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~lt~~~~~~~~~~~ 268 (715)
|.. |+..+ .+..|.++|+ .++ .. ..+..+...+....|
T Consensus 115 ~~g~~----lasgs---------------~D~~i~lwd~-----------------~~~~~~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 115 DYGLI----LACGS---------------SDGAISLLTY-----------------TGEGQWEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp TTCSC----EEEEC---------------SSSCEEEEEE-----------------CSSSCEEECCBTTSSSSCBCCCEE
T ss_pred CCCcE----EEEEc---------------CCCCEEEEec-----------------CCCCCcceeeeeccccCCcceEEE
Confidence 655 55443 2235666665 322 21 223334455778899
Q ss_pred cCCC-----------------CeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccc
Q 005093 269 SPDG-----------------KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 331 (715)
Q Consensus 269 spdg-----------------~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~ 331 (715)
+|++ +.|+-.+.+ ..|.++|+.+++.... .. .+.+ +
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D-----------~~v~lWd~~~~~~~~~-------~~--------~l~~-h 211 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCD-----------NLIKLWKEEEDGQWKE-------EQ--------KLEA-H 211 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBTT-----------SBCCEEEECTTSCEEE-------EE--------CCBC-C
T ss_pred ccccCCccccccccccCccccceEEEecCC-----------CeEEEEEeCCCCccce-------ee--------eccc-C
Confidence 9984 444432222 2366666643221000 00 0000 1
Q ss_pred cCCCCCCccccCC---CEEEEEeeeCCeeEEEEEECCCC---c--EEEecCCCCCceeEEEeecCCEEEEEE
Q 005093 332 SSSILSNPWLSDG---CTMLLSSIWGSSQVIISVNVSSG---E--LLRITPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 332 ~~~~~~~~~~~dg---~~l~~~~~~~~~~~l~~~d~~tg---~--~~~l~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
...+..++|+|++ ..++++...++..+|| ++.++ + .+.+......+....|++++..|+...
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw--~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~ 281 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW--TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSG 281 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEEE--ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEEE--EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEc
Confidence 1234567899986 2366666666655665 44431 1 122222223344467888877665443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-07 Score=92.40 Aligned_cols=270 Identities=14% Similarity=0.115 Sum_probs=146.7
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEec-CccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
+.+...+| |||++|+.....+ ...+| .+++....... ... +..+.|+|||+.|+....+..
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDG-----TVRLWSKDDQWLGTVVYTGQGF----------LNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTS-----EEEEEEESSSEEEEEEEECSSC----------EEEEEEETTTTEEEEEETTSC
T ss_pred CCcEEEEe-cCCCEEEEEEcCC-----cEEEEECCCCEEEEEeecCCcc----------EEEEEECCCCCEEEEecCCCe
Confidence 66888899 9999988765542 34455 34443333322 222 379999999999988765543
Q ss_pred CCCCCccCCCCCCCCC---CcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEec-CC
Q 005093 120 PSKPTFSLGSTKGGSS---DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LN 195 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~sp-dg 195 (715)
.. .+.......... ..........+.|.. ...+.......|.+|| .......+ ......+..+.|+| ++
T Consensus 83 i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d~~i~~~d-~~~~~~~~--~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 83 IN--GVPLFATSGEDPLYTLIGHQGNVCSLSFQD--GVVISGSWDKTAKVWK-EGSLVYNL--QAHNASVWDAKVVSFSE 155 (313)
T ss_dssp EE--EEETTCCTTSCC-CEECCCSSCEEEEEEET--TEEEEEETTSEEEEEE-TTEEEEEE--ECCSSCEEEEEEEETTT
T ss_pred EE--EEEeeecCCCCcccchhhcccCEEEEEecC--CEEEEEeCCCCEEEEc-CCcEEEec--ccCCCceeEEEEccCCC
Confidence 21 111111111111 111111222233321 1122223347899999 23333344 23344677888988 77
Q ss_pred CCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC-CCccccceeEcCCCCe
Q 005093 196 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKF 274 (715)
Q Consensus 196 ~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~~~~spdg~~ 274 (715)
+. ++... .+..|..+|. ......+.. ....+....|+|+|+
T Consensus 156 ~~----l~~~~---------------~d~~i~i~d~------------------~~~~~~~~~~~~~~i~~~~~~~~~~- 197 (313)
T 3odt_A 156 NK----FLTAS---------------ADKTIKLWQN------------------DKVIKTFSGIHNDVVRHLAVVDDGH- 197 (313)
T ss_dssp TE----EEEEE---------------TTSCEEEEET------------------TEEEEEECSSCSSCEEEEEEEETTE-
T ss_pred CE----EEEEE---------------CCCCEEEEec------------------CceEEEEeccCcccEEEEEEcCCCe-
Confidence 65 55443 2235777774 233334444 556788899999998
Q ss_pred EEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeC
Q 005093 275 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 354 (715)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~ 354 (715)
|+..+.+ ..|+++|+.+++...... . +...+..+.|+|++. ++ +...+
T Consensus 198 ~~~~~~d-----------g~i~i~d~~~~~~~~~~~----------~---------~~~~i~~~~~~~~~~-l~-~~~~d 245 (313)
T 3odt_A 198 FISCSND-----------GLIKLVDMHTGDVLRTYE----------G---------HESFVYCIKLLPNGD-IV-SCGED 245 (313)
T ss_dssp EEEEETT-----------SEEEEEETTTCCEEEEEE----------C---------CSSCEEEEEECTTSC-EE-EEETT
T ss_pred EEEccCC-----------CeEEEEECCchhhhhhhh----------c---------CCceEEEEEEecCCC-EE-EEecC
Confidence 6544433 258889987654311100 0 111345677999994 43 44433
Q ss_pred CeeEEEEEECCCCcEEEecC-CCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 355 SSQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 355 ~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
..|..+|+.+++...... ....+....|++++. ++. .+. -..|.+.++.++
T Consensus 246 --g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~~---dg~i~iw~~~~~ 297 (313)
T 3odt_A 246 --RTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIV-GSS---DNLVRIFSQEKS 297 (313)
T ss_dssp --SEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEE-EET---TSCEEEEESCGG
T ss_pred --CEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEE-EeC---CCcEEEEeCCCC
Confidence 357777888887665443 333444557788876 333 222 234666666544
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4e-09 Score=111.12 Aligned_cols=112 Identities=11% Similarity=0.086 Sum_probs=75.0
Q ss_pred CCCCcEEEEEcCCCCCCCCccchH-HHHHHHh-CCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 555 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~-~~~~la~-~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~ 555 (715)
+...|+||++||..... ...|.. +...|.+ .+|.|+++|++|. |.+...... .......+++.+++++|.++.
T Consensus 67 ~~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~---g~s~y~~~~-~~~~~~a~~l~~ll~~L~~~~ 141 (450)
T 1rp1_A 67 QTDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKG---SQTSYTQAA-NNVRVVGAQVAQMLSMLSANY 141 (450)
T ss_dssp CTTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHH---HSSCHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccc---cCCcchHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 34579999999955432 224554 4455544 5899999999983 322100000 000111456667777776443
Q ss_pred CCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 556 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 556 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
.++.+++.|+||||||.+|..++.++|+ +.+++++.|..
T Consensus 142 g~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa~ 180 (450)
T 1rp1_A 142 SYSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPVE 180 (450)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCCC
T ss_pred CCChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCccc
Confidence 3567899999999999999999999998 99999887754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-06 Score=89.00 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=72.4
Q ss_pred ceeEc-CCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccC
Q 005093 265 FPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 343 (715)
Q Consensus 265 ~~~~s-pdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 343 (715)
.+.|. +||+ ++|.+.. .++|++|+.++....+. ... +... ...+.+-.| .+...+..+++
T Consensus 230 ~~~~~~~dG~-~~~vs~~-----------g~V~v~d~~~~~~~v~~-~~~-~~~~-~~~~~g~~p----~g~q~~a~~~~ 290 (386)
T 3sjl_D 230 HPAYSQKAGR-LVWPTYT-----------GKIHQIDLSSGDAKFLP-AVE-ALTE-AERADGWRP----GGWQQVAYHRA 290 (386)
T ss_dssp CCEEETTTTE-EEEEBTT-----------SEEEEEECTTSSCEECC-CEE-SSCH-HHHHTTEEE----CSSSCEEEETT
T ss_pred cceeEcCCCc-EEEEeCC-----------CEEEEEECCCCcceeec-cee-cccc-ccccccccC----CCcceeeECCC
Confidence 36775 6774 7777753 25999998775532111 000 0000 000000011 13345667889
Q ss_pred CCEEEEEeeeC-------CeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 344 GCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 344 g~~l~~~~~~~-------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
++++|+....+ ...+++.+|++|+++..-...........+++|++.++++... ....|.++|..+++
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~--~~~~VsViD~~t~k 365 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESGE 365 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET--TTTEEEEEETTTCC
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC--CCCeEEEEECCCCc
Confidence 99998876532 3478999999998876543322223346789998744444432 34468888876553
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.5e-07 Score=93.60 Aligned_cols=232 Identities=13% Similarity=0.058 Sum_probs=125.8
Q ss_pred cccceEEeeCC-CCceEEEEecCCCCCCeEEEEecCCccEEEEecCc----cccccccCCCcccceeecC-CCCeEEEEe
Q 005093 42 MTGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQ----TVHGSVYADGWFEGISWNS-DETLIAYVA 115 (715)
Q Consensus 42 ~~~~~~~~~Sp-dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~wSp-Dg~~la~~~ 115 (715)
.+.+...+||| ||+.||..... +.-.+|.+. +++......... .....-.....+..+.|+| +++.|+..+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~d--g~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSD--GVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETT--SCEEEEECC-CCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred CCcEEEEEEecCCCCEEEEEcCC--CeEEEEECC-CCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 36789999999 99999877554 322333332 222221111000 0000000112347999999 555555532
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCC
Q 005093 116 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLN 195 (715)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg 195 (715)
. ...|.+||+.+++.... ...........|+|.+
T Consensus 120 ~--------------------------------------------d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~ 153 (408)
T 4a11_B 120 F--------------------------------------------DKTLKVWDTNTLQTADV--FNFEETVYSHHMSPVS 153 (408)
T ss_dssp T--------------------------------------------TSEEEEEETTTTEEEEE--EECSSCEEEEEECSSC
T ss_pred C--------------------------------------------CCeEEEeeCCCCcccee--ccCCCceeeeEeecCC
Confidence 1 26799999999887665 2334456678888854
Q ss_pred CCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeE
Q 005093 196 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 275 (715)
Q Consensus 196 ~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l 275 (715)
.. ...++... ....|.++|+. .......+......+....|+|+|+++
T Consensus 154 ~~-~~~~~~~~---------------~~~~v~~~d~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l 201 (408)
T 4a11_B 154 TK-HCLVAVGT---------------RGPKVQLCDLK----------------SGSCSHILQGHRQEILAVSWSPRYDYI 201 (408)
T ss_dssp SS-CCEEEEEE---------------SSSSEEEEESS----------------SSCCCEEECCCCSCEEEEEECSSCTTE
T ss_pred CC-CcEEEEEc---------------CCCeEEEEeCC----------------CcceeeeecCCCCcEEEEEECCCCCcE
Confidence 41 00044433 23468888871 333455666667778899999999975
Q ss_pred EEEecCCCCCCCCccccceeEeeecCCCCCCCccc--ceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee
Q 005093 276 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE--KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 353 (715)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~ 353 (715)
+++...+ ..|.++|+.++....... ......... ...+. .+...+..+.|+|+++.++.. ..
T Consensus 202 l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~ 265 (408)
T 4a11_B 202 LATASAD----------SRVKLWDVRRASGCLITLDQHNGKKSQAV----ESANT-AHNGKVNGLCFTSDGLHLLTV-GT 265 (408)
T ss_dssp EEEEETT----------SCEEEEETTCSSCCSEECCTTTTCSCCCT----TTSSC-SCSSCEEEEEECTTSSEEEEE-ET
T ss_pred EEEEcCC----------CcEEEEECCCCCcccccccccccccceee----ccccc-cccCceeEEEEcCCCCEEEEe-cC
Confidence 5555443 247888887654211100 000000000 00000 112234567899999866544 33
Q ss_pred CCeeEEEEEECCCCcEEEe
Q 005093 354 GSSQVIISVNVSSGELLRI 372 (715)
Q Consensus 354 ~~~~~l~~~d~~tg~~~~l 372 (715)
++ .|..+|+.+++....
T Consensus 266 dg--~i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 266 DN--RMRLWNSSNGENTLV 282 (408)
T ss_dssp TS--CEEEEETTTCCBCCC
T ss_pred CC--eEEEEECCCCcccee
Confidence 33 466678877765443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.77 E-value=6.5e-07 Score=90.00 Aligned_cols=232 Identities=10% Similarity=0.103 Sum_probs=126.3
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCC--CceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTV 89 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spd--g~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 89 (715)
....+.++++.+...+.. ..+..+.+.+...+|||+ |+.||-.+.++ ...+| .+++...+.... ..
T Consensus 29 ~D~~v~iw~~~~~~~~~~----~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~~-~h 98 (297)
T 2pm7_B 29 SDKTIKIFEVEGETHKLI----DTLTGHEGPVWRVDWAHPKFGTILASCSYDG-----KVMIWKEENGRWSQIAVHA-VH 98 (297)
T ss_dssp TTSCEEEEEBCSSCBCCC----EEECCCSSCEEEEEECCGGGCSEEEEEETTT-----EEEEEEBSSSCBCCCEEEC-CC
T ss_pred CCCEEEEEecCCCCcEEE----EEEccccCCeEEEEecCCCcCCEEEEEcCCC-----EEEEEEcCCCceEEEEEee-cC
Confidence 445566666764322111 112233467899999975 88887665542 34566 333322222111 11
Q ss_pred cccccCCCcccceeecCC--CCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEE
Q 005093 90 HGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVI 167 (715)
Q Consensus 90 ~~~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 167 (715)
. ..+..+.|+|+ |+.|+..+. ...|.+|
T Consensus 99 ~------~~v~~v~~~p~~~g~~l~s~s~--------------------------------------------d~~v~~w 128 (297)
T 2pm7_B 99 S------ASVNSVQWAPHEYGPMLLVASS--------------------------------------------DGKVSVV 128 (297)
T ss_dssp S------SCEEEEEECCGGGCSEEEEEET--------------------------------------------TSEEEEE
T ss_pred C------CceeEEEeCcCCCCcEEEEEEC--------------------------------------------CCcEEEE
Confidence 1 12378999998 777766432 2568889
Q ss_pred EccCCc---eEeecCCCCCCccceEEEecCC-------------CCCccEEEEEeecCccceeeeeeeecCCceEEEEec
Q 005093 168 NINSGE---VQAVKGIPKSLSVGQVVWAPLN-------------EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 231 (715)
Q Consensus 168 ~~~~g~---~~~l~~~~~~~~~~~~~~spdg-------------~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 231 (715)
|+.++. ...+ ......+..+.|+|++ +. |+..+ .+..|.++|+
T Consensus 129 d~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~----l~sgs---------------~D~~v~lwd~ 187 (297)
T 2pm7_B 129 EFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVTGG---------------ADNLVKIWKY 187 (297)
T ss_dssp EBCSSSCBCCEEE--ECCSSCEEEEEECCCC------------CCE----EEEEE---------------TTSCEEEEEE
T ss_pred EecCCCceeeeee--ecccCccceEeecCCcccccccCCCCCCcce----EEEEc---------------CCCcEEEEEE
Confidence 987653 2223 2233456788999974 33 44332 2224555565
Q ss_pred ccccchhhhhhhhccCCCCCC-----ceecCCCCccccceeEcCCC---CeEEEEecCCCCCCCCccccceeEeeecCCC
Q 005093 232 SLYKSEASELELKESSSEDLP-----VVNLTESISSAFFPRFSPDG---KFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 303 (715)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~-----~~~lt~~~~~~~~~~~spdg---~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 303 (715)
.++. ...+..+...+...+|||++ +.|+-.+.+. .|.++|+.+.
T Consensus 188 -----------------~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~-----------~v~iWd~~~~ 239 (297)
T 2pm7_B 188 -----------------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR-----------TCIIWTQDNE 239 (297)
T ss_dssp -----------------ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-----------CEEEEEESST
T ss_pred -----------------cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC-----------cEEEEEeCCC
Confidence 2222 23456667778999999996 6666555542 3677776653
Q ss_pred CCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 005093 304 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 370 (715)
Q Consensus 304 ~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 370 (715)
..... ..+... .. +...+..++|+|||+.| ++...++..+||..+.. |...
T Consensus 240 ~~~~~-------~~~~~~---~~----~~~~v~~~~~s~~g~~l-as~~~D~~v~lw~~~~~-g~w~ 290 (297)
T 2pm7_B 240 QGPWK-------KTLLKE---EK----FPDVLWRASWSLSGNVL-ALSGGDNKVTLWKENLE-GKWE 290 (297)
T ss_dssp TSCCE-------EEESSS---SC----CSSCEEEEEECSSSCCE-EEEETTSCEEEEEECTT-SCEE
T ss_pred CCccc-------eeeeec---cc----CCCcEEEEEECCCCCEE-EEEcCCCcEEEEEECCC-CcEE
Confidence 21100 000000 00 11134467899999855 55555677788877653 4433
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.2e-07 Score=95.75 Aligned_cols=160 Identities=8% Similarity=0.099 Sum_probs=96.2
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEec---CCccEEEEecCc---cccccccCCCcccceeecCCC-CeEEEE
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDE-TLIAYV 114 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~wSpDg-~~la~~ 114 (715)
...+...+|||||+.|+.. .. ....+|+ +++...+..... ..| ...+..+.|+|+| +.|+..
T Consensus 177 ~~~v~~~~~~~~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~s~ 245 (447)
T 3dw8_B 177 TYHINSISINSDYETYLSA-DD-----LRINLWHLEITDRSFNIVDIKPANMEEL-----TEVITAAEFHPNSCNTFVYS 245 (447)
T ss_dssp SSCCCEEEECTTSSEEEEE-CS-----SEEEEEETTEEEEEEEEEECCCSSGGGC-----CCCEEEEEECSSCTTEEEEE
T ss_pred CcceEEEEEcCCCCEEEEe-CC-----CeEEEEECCCCCceeeeeeccccccccc-----CcceEEEEECCCCCcEEEEE
Confidence 3568899999999998865 32 2345552 233333332110 011 1234799999999 666664
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce-----EeecCCCCCC-----
Q 005093 115 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-----QAVKGIPKSL----- 184 (715)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-----~~l~~~~~~~----- 184 (715)
+. ...|.+||+.+++. ..+. ....
T Consensus 246 ~~--------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~ 279 (447)
T 3dw8_B 246 SS--------------------------------------------KGTIRLCDMRASALCDRHSKLFE--EPEDPSNRS 279 (447)
T ss_dssp ET--------------------------------------------TSCEEEEETTTCSSSCTTCEEEC--CC-----CC
T ss_pred eC--------------------------------------------CCeEEEEECcCCccccceeeEec--cCCCccccc
Confidence 32 25699999988774 4442 2221
Q ss_pred -------ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCC-CCCceec
Q 005093 185 -------SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE-DLPVVNL 256 (715)
Q Consensus 185 -------~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 256 (715)
.+..+.|+|||+. |+... . ..|.++|+. . +.....+
T Consensus 280 ~~~~~~~~v~~~~~s~~g~~----l~~~~---------------~-~~v~iwd~~----------------~~~~~~~~~ 323 (447)
T 3dw8_B 280 FFSEIISSISDVKFSHSGRY----MMTRD---------------Y-LSVKVWDLN----------------MENRPVETY 323 (447)
T ss_dssp HHHHHTTCEEEEEECTTSSE----EEEEE---------------S-SEEEEEETT----------------CCSSCSCCE
T ss_pred cccccCceEEEEEECCCCCE----EEEee---------------C-CeEEEEeCC----------------CCcccccee
Confidence 5778999999997 66543 1 367788861 2 2223333
Q ss_pred CCCCcc---------------ccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 257 TESISS---------------AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 257 t~~~~~---------------~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
...... .....|||||++|+..+.+ ..|+++|+.+++.
T Consensus 324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d-----------g~v~iwd~~~~~~ 376 (447)
T 3dw8_B 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN-----------NFFRMFDRNTKRD 376 (447)
T ss_dssp ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST-----------TEEEEEETTTCCE
T ss_pred eccccccccccccccccccccceEEEECCCCCEEEEeccC-----------CEEEEEEcCCCcc
Confidence 332211 1238999999998655544 2488888887654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-06 Score=89.46 Aligned_cols=211 Identities=15% Similarity=0.161 Sum_probs=112.9
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEecCC----ccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS----QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
.+.+...+|||||+.||-.... +.-.+|.+.... ....+..+ .+..+ .+..+.|||||++|+..+.+
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D--~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~------~V~~v~~sp~g~~las~s~D 128 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFD--STVSIWAKEESADRTFEMDLLAII-EGHEN------EVKGVAWSNDGYYLATCSRD 128 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETT--SCEEEEEC-------CCCEEEEEE-C----------CEEEEEECTTSCEEEEEETT
T ss_pred cCCEEEEEECCCCCEEEEEeCC--CcEEEEEcccCcCccccceeEEEE-cCCCC------cEEEEEECCCCCEEEEEeCC
Confidence 3568999999999998876554 332333322110 11111111 11112 23789999999988875432
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc-CCc----eEeecCCCCCCccceEEEe
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGE----VQAVKGIPKSLSVGQVVWA 192 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~----~~~l~~~~~~~~~~~~~~s 192 (715)
..|.+||+. +++ ...+ ......+..+.|+
T Consensus 129 --------------------------------------------~~v~iwd~~~~~~~~~~~~~~--~~h~~~v~~v~~~ 162 (330)
T 2hes_X 129 --------------------------------------------KSVWIWETDESGEEYECISVL--QEHSQDVKHVIWH 162 (330)
T ss_dssp --------------------------------------------SCEEEEECCTTCCCCEEEEEE--CCCSSCEEEEEEC
T ss_pred --------------------------------------------CEEEEEeccCCCCCeEEEEEe--ccCCCceEEEEEC
Confidence 558899984 322 2233 2333467789999
Q ss_pred cCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC---CceecCCCCccccceeEc
Q 005093 193 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFS 269 (715)
Q Consensus 193 pdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~~~~s 269 (715)
||++. |+..+ . +..|.++|+ ..+ ....+..+...+....|+
T Consensus 163 p~~~~----l~s~s-~--------------D~~i~iW~~-----------------~~~~~~~~~~~~~h~~~v~~~~~~ 206 (330)
T 2hes_X 163 PSEAL----LASSS-Y--------------DDTVRIWKD-----------------YDDDWECVAVLNGHEGTVWSSDFD 206 (330)
T ss_dssp SSSSE----EEEEE-T--------------TSCEEEEEE-----------------ETTEEEEEEEECCCSSCEEEEEEC
T ss_pred CCCCE----EEEEc-C--------------CCeEEEEEC-----------------CCCCeeEEEEccCCCCcEEEEEec
Confidence 99986 66554 1 124555554 222 234556666778889999
Q ss_pred CC--CCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEE
Q 005093 270 PD--GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 347 (715)
Q Consensus 270 pd--g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l 347 (715)
|+ +..|+-.+.+. .|.++++.++.... ......... +++.+...+..++|++++ +
T Consensus 207 ~~~~~~~l~s~s~D~-----------~v~iw~~~~~~~~~--~~~~~~~~~--------~~~~h~~~v~~v~~s~~~--~ 263 (330)
T 2hes_X 207 KTEGVFRLCSGSDDS-----------TVRVWKYMGDDEDD--QQEWVCEAI--------LPDVHKRQVYNVAWGFNG--L 263 (330)
T ss_dssp CSSSSCEEEEEETTS-----------CEEEEEEEEECTTS--CEEEEEEEE--------CCSCCSSCEEEEEECTTS--C
T ss_pred CCCCeeEEEEEeCCC-----------eEEEEEecCCCccc--cceeEEeee--------cccccccceEEEEEcCCC--E
Confidence 99 56666555442 36666665432110 000000000 001112234567788665 4
Q ss_pred EEEeeeCCeeEEEEEECCCCc
Q 005093 348 LLSSIWGSSQVIISVNVSSGE 368 (715)
Q Consensus 348 ~~~~~~~~~~~l~~~d~~tg~ 368 (715)
+++...++..+||.. .+++
T Consensus 264 l~s~~~dg~v~iw~~--~~~~ 282 (330)
T 2hes_X 264 IASVGADGVLAVYEE--VDGE 282 (330)
T ss_dssp EEEEETTSCEEEEEE--ETTE
T ss_pred EEEEeCCCEEEEEEc--CCCc
Confidence 455555666666654 4564
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.73 E-value=6e-07 Score=92.82 Aligned_cols=231 Identities=8% Similarity=0.017 Sum_probs=117.9
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
+.+...+|||||+.||..... . +.+| ..++....... .+. ..+.|+++++.+++++....
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~-----~-~~iw~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~d~- 81 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLK-----S-FEIYNVHPVAHIMSQEM-RHL----------SKVRMLHRTNYVAFVTGVKE- 81 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSS-----E-EEEEEETTEEEEEEEEC-SCC----------CEEEECTTSSEEEEECSSTT-
T ss_pred CceEEEEECCCCCEEEEEcCC-----E-EEEEecCCcceeeeeec-CCe----------EEEEEcCCCCEEEEEECCcc-
Confidence 668999999999998865332 2 3456 22222211111 122 67889999988877654321
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC-ceEeecCCCCCCccceEEEecCCCCCc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVKGIPKSLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~l~~~~~~~~~~~~~~spdg~~~~ 199 (715)
....|.......... .........+.+.++ .+.......|++||+.++ +.... ... ......++| ..
T Consensus 82 ~v~iWd~~~~~~~~~-~~~~~~v~~v~~~~~---~~~~~~~~~i~i~d~~~~~~~~~~--~~~--~~~~~~~s~--~~-- 149 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSR-IKVDAPVKDLFLSRE---FIVVSYGDVISVFKFGNPWKRITD--DIR--FGGVCEFSN--GL-- 149 (355)
T ss_dssp EEEEEETTTTEEEEE-EECSSCEEEEEECSS---EEEEEETTEEEEEESSTTCCBSSC--CEE--EEEEEEEET--TE--
T ss_pred EEEEEECCCCcEEEE-EECCCceEEEEEcCC---EEEEEEcCEEEEEECCCCceeeEE--ecc--CCceEEEEc--cE--
Confidence 111222111100000 000111112222222 111112356777777665 22111 011 233445666 33
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-----------------ceecCCCCcc
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----------------VVNLTESISS 262 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~lt~~~~~ 262 (715)
+++.+. .....|.++|+ .++. ...+..+...
T Consensus 150 --la~~sg-------------~~~g~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~ 197 (355)
T 3vu4_A 150 --LVYSNE-------------FNLGQIHITKL-----------------QSSGSATTQDQGVQQKAILGKGVLIKAHTNP 197 (355)
T ss_dssp --EEEEES-------------SCTTCEEEEEC-----------------CC------------------CCEEECCCSSC
T ss_pred --EEEeCC-------------CcCcEEEEEEC-----------------CCCCccccccccccccccCcccEEEEccCCc
Confidence 565521 12235777776 3322 4566777778
Q ss_pred ccceeEcCCCCeEEEEecCCCCCCCCccccce-eEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCcc
Q 005093 263 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDS-LHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 340 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~-l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 340 (715)
+...+|||||+.|+-.+.+. . +.++|+.+++... +.. |.+...+..++|
T Consensus 198 v~~~~~s~~g~~l~s~s~d~-----------~~v~iwd~~~~~~~~~~~~------------------g~h~~~v~~~~~ 248 (355)
T 3vu4_A 198 IKMVRLNRKSDMVATCSQDG-----------TIIRVFKTEDGVLVREFRR------------------GLDRADVVDMKW 248 (355)
T ss_dssp EEEEEECTTSSEEEEEETTC-----------SEEEEEETTTCCEEEEEEC------------------TTCCSCEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCC-----------CEEEEEECCCCcEEEEEEc------------------CCCCCcEEEEEE
Confidence 89999999999888766552 4 7788887754311 110 001123557789
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCC
Q 005093 341 LSDGCTMLLSSIWGSSQVIISVNVSSG 367 (715)
Q Consensus 341 ~~dg~~l~~~~~~~~~~~l~~~d~~tg 367 (715)
+|||+.| ++...++..+|| |+..+
T Consensus 249 s~~~~~l-~s~s~d~~v~iw--~~~~~ 272 (355)
T 3vu4_A 249 STDGSKL-AVVSDKWTLHVF--EIFND 272 (355)
T ss_dssp CTTSCEE-EEEETTCEEEEE--ESSCC
T ss_pred CCCCCEE-EEEECCCEEEEE--EccCC
Confidence 9999855 455545544554 55443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.5e-06 Score=90.58 Aligned_cols=248 Identities=10% Similarity=0.027 Sum_probs=137.2
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEec---CCccEEEEecCccccccccCCCcccceeec----CCCCeEEEEeec
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWN----SDETLIAYVAEE 117 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~wS----pDg~~la~~~~~ 117 (715)
...+++||||++|+... .+ + .+..++. +++....+...... ..+.+| |||++++.....
T Consensus 199 p~~v~~SpDGr~lyv~~-~d-g--~V~viD~~~~t~~~v~~i~~G~~P----------~~ia~s~~~~pDGk~l~v~n~~ 264 (567)
T 1qks_A 199 VHISRLSASGRYLFVIG-RD-G--KVNMIDLWMKEPTTVAEIKIGSEA----------RSIETSKMEGWEDKYAIAGAYW 264 (567)
T ss_dssp EEEEEECTTSCEEEEEE-TT-S--EEEEEETTSSSCCEEEEEECCSEE----------EEEEECCSTTCTTTEEEEEEEE
T ss_pred ccceEECCCCCEEEEEc-CC-C--eEEEEECCCCCCcEeEEEecCCCC----------ceeEEccccCCCCCEEEEEEcc
Confidence 45789999999876543 32 2 5666663 44444333332232 588999 799988776443
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCC----------CCccc
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK----------SLSVG 187 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~----------~~~~~ 187 (715)
. .++.++|..+.++.....+.+ ...+.
T Consensus 265 ~-------------------------------------------~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 265 P-------------------------------------------PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp T-------------------------------------------TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred C-------------------------------------------CeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence 2 668888988877654311111 11234
Q ss_pred eEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecC--CCCccccc
Q 005093 188 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--ESISSAFF 265 (715)
Q Consensus 188 ~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~ 265 (715)
.+..|+++.. +++... ....|+.+|. .......++ ........
T Consensus 302 ~i~~s~~~~~----~vv~~~--------------~~g~v~~vd~-----------------~~~~~~~v~~i~~~~~~~d 346 (567)
T 1qks_A 302 AILASHYRPE----FIVNVK--------------ETGKILLVDY-----------------TDLNNLKTTEISAERFLHD 346 (567)
T ss_dssp EEEECSSSSE----EEEEET--------------TTTEEEEEET-----------------TCSSEEEEEEEECCSSEEE
T ss_pred EEEEcCCCCE----EEEEec--------------CCCeEEEEec-----------------CCCccceeeeeeccccccC
Confidence 5667888776 555542 2247999996 322211111 11223456
Q ss_pred eeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceec-CCCCCccccccCCCCCCc-cccC
Q 005093 266 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC-AEGDCFPGLYSSSILSNP-WLSD 343 (715)
Q Consensus 266 ~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~-~~~d 343 (715)
..|+|||++++.+.+.+ ..|.++|+.+++.. ..+.. .. ...|| .... +.|+
T Consensus 347 ~~~~pdgr~~~va~~~s----------n~V~ViD~~t~kl~----------~~i~vgg~-~Phpg------~g~~~~~p~ 399 (567)
T 1qks_A 347 GGLDGSHRYFITAANAR----------NKLVVIDTKEGKLV----------AIEDTGGQ-TPHPG------RGANFVHPT 399 (567)
T ss_dssp EEECTTSCEEEEEEGGG----------TEEEEEETTTTEEE----------EEEECSSS-SBCCT------TCEEEEETT
T ss_pred ceECCCCCEEEEEeCCC----------CeEEEEECCCCcEE----------EEEeccCc-CCCCc------cceeeECCC
Confidence 78999999887666543 45999998875431 11111 11 01111 1222 3677
Q ss_pred CCEEEEEeeeCCeeEEEEEECCC-------CcE-EEecCCCCCceeEEEeecCCEEEEEEe-CCC--CCCeEEEEeeccc
Q 005093 344 GCTMLLSSIWGSSQVIISVNVSS-------GEL-LRITPAESNFSWSLLTLDGDNIIAVSS-SPV--DVPQVKYGYFVDK 412 (715)
Q Consensus 344 g~~l~~~~~~~~~~~l~~~d~~t-------g~~-~~l~~~~~~~~~~~~s~~~~~l~~~~~-~~~--~p~~l~~~~~~~~ 412 (715)
+..++++.. .+...+..+|.++ -+. +.+......-.....++++.++++... +++ ....|.++|+.+.
T Consensus 400 ~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 400 FGPVWATSH-MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCcEEEeCC-CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 776765544 3445678888876 223 444322111112456788887775431 221 1236888887644
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.1e-06 Score=82.80 Aligned_cols=244 Identities=14% Similarity=0.067 Sum_probs=142.7
Q ss_pred eEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 005093 46 SAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 123 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 123 (715)
....|||++ .||...+ ....+| .+|+..++...... .. .+..+.|+|||++|+..+.
T Consensus 29 ~~l~WS~~~-~lAvg~D------~tV~iWd~~tg~~~~~~~~~~~-~~------~V~~v~~~~~~~~l~sgs~------- 87 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALD------NSVYLWSASSGDILQLLQMEQP-GE------YISSVAWIKEGNYLAVGTS------- 87 (318)
T ss_dssp BCEEECTTS-EEEEEET------TEEEEEETTTCCEEEEEECCST-TC------CEEEEEECTTSSEEEEEET-------
T ss_pred eEEEECCCC-EEEEEeC------CEEEEEECCCCCEEEEEEecCC-CC------eEEEEEECCCCCEEEEEEC-------
Confidence 457899997 6775432 134567 56666666554221 11 2378999999998887532
Q ss_pred CccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEE
Q 005093 124 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 203 (715)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~ 203 (715)
...|.+|++++++..... .. .......++++++. ++
T Consensus 88 -------------------------------------Dg~v~iw~~~~~~~~~~~--~~-h~~~~~~~~~~~~~----l~ 123 (318)
T 4ggc_A 88 -------------------------------------SAEVQLWDVQQQKRLRNM--TS-HSARVGSLSWNSYI----LS 123 (318)
T ss_dssp -------------------------------------TSEEEEEETTTTEEEEEE--EC-CSSCEEEEEEETTE----EE
T ss_pred -------------------------------------CCcEEEeecCCceeEEEe--cC-ccceEEEeecCCCE----EE
Confidence 266999999998765431 11 12233467777774 44
Q ss_pred EEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCC
Q 005093 204 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 283 (715)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~ 283 (715)
... . ...+...+.. ........+...........|+++|+.|+..+.+.
T Consensus 124 s~~-~--------------~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~- 172 (318)
T 4ggc_A 124 SGS-R--------------SGHIHHHDVR---------------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN- 172 (318)
T ss_dssp EEE-T--------------TSEEEEEETT---------------SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred EEe-c--------------CCceEeeecC---------------CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCc-
Confidence 333 1 1234455531 01223344555566778889999999887666542
Q ss_pred CCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 005093 284 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 363 (715)
Q Consensus 284 ~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d 363 (715)
.|.++|+.+++.......... .....+....|++++..++..........+..+|
T Consensus 173 ----------~i~iwd~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 173 ----------LVNVWPSAPGEGGWVPLQTFT---------------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp ----------CEEEEESSCBTTBSCCSEEEC---------------CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred ----------ceeEEECCCCcccccceeeec---------------ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 377888877554221111000 0011233456777777676655544455677778
Q ss_pred CCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 364 VSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 364 ~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
..++...........+....++++++.++......+ ..|.+.++.++
T Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d--~~i~iwd~~~~ 274 (318)
T 4ggc_A 228 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ--NQLVIWKYPTM 274 (318)
T ss_dssp TTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTT--CCEEEEETTTC
T ss_pred cccccccccccceeeeeeeeecccccceEEEEEcCC--CEEEEEECCCC
Confidence 887777666555554555678888888876553332 23666665443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.4e-07 Score=103.05 Aligned_cols=215 Identities=8% Similarity=0.079 Sum_probs=121.3
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
+.+...+|||||+.||.....+ ...+|.......+..... . ..+..+.|+| |++|+-.+.
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg-----~I~lw~~~~~~~~~~~~~--~------~~V~~l~fsp-g~~L~S~s~------ 77 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTG-----EVHIYGQQQVEVVIKLED--R------SAIKEMRFVK-GIYLVVINA------ 77 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTS-----EEEEECSTTCEEEEECSS--C------CCEEEEEEET-TTEEEEEET------
T ss_pred CCcEEEEECCCCCEEEEEeCCC-----EEEEEeCCCcEEEEEcCC--C------CCEEEEEEcC-CCEEEEEEC------
Confidence 5688999999999999776543 445663222222222221 1 1337999999 886665432
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 202 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i 202 (715)
...|.+||+++++.... ......+..++|+|||+. |
T Consensus 78 --------------------------------------D~~v~lWd~~~~~~~~~--~~~~~~V~~v~~sp~g~~----l 113 (902)
T 2oaj_A 78 --------------------------------------KDTVYVLSLYSQKVLTT--VFVPGKITSIDTDASLDW----M 113 (902)
T ss_dssp --------------------------------------TCEEEEEETTTCSEEEE--EECSSCEEEEECCTTCSE----E
T ss_pred --------------------------------------cCeEEEEECCCCcEEEE--EcCCCCEEEEEECCCCCE----E
Confidence 26799999998875433 122345778999999996 6
Q ss_pred EEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce------------ecCCCCccccceeEcC
Q 005093 203 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV------------NLTESISSAFFPRFSP 270 (715)
Q Consensus 203 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~lt~~~~~~~~~~~sp 270 (715)
+... .+..|.++|+ .++... .+..+...+...+|+|
T Consensus 114 ~sgs---------------~dg~V~lwd~-----------------~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 114 LIGL---------------QNGSMIVYDI-----------------DRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp EEEE---------------TTSCEEEEET-----------------TTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred EEEc---------------CCCcEEEEEC-----------------CCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 5543 2236777786 333321 2233445688899999
Q ss_pred CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCC--CccccccCCCCCCccccCCCEE
Q 005093 271 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGD--CFPGLYSSSILSNPWLSDGCTM 347 (715)
Q Consensus 271 dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~dg~~l 347 (715)
++..++.+...+ ..+ ++|+.+++... +.... +.-...... .....+...+..++|+|||+.|
T Consensus 162 ~~~~~l~~g~~d----------g~v-lWd~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 162 RDIGTVLISYEY----------VTL-TYSLVENEIKQSFIYEL----PPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp TEEEEEEEECSS----------CEE-EEETTTTEEEEEECCCB----CTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred CCCCEEEEEeCC----------CcE-EEECCCCceEEEEeccc----CCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 754444444332 247 88887754311 11000 000000000 0000011235577899999854
Q ss_pred EEEeeeCCeeEEEEEECCCCcEEE
Q 005093 348 LLSSIWGSSQVIISVNVSSGELLR 371 (715)
Q Consensus 348 ~~~~~~~~~~~l~~~d~~tg~~~~ 371 (715)
++...++ .|..+|+.+++...
T Consensus 227 -asgs~Dg--~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 227 -ITIHEDN--SLVFWDANSGHMIM 247 (902)
T ss_dssp -EEEETTC--CEEEEETTTCCEEE
T ss_pred -EEEECCC--eEEEEECCCCcEEE
Confidence 4555444 45666888887654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-06 Score=89.07 Aligned_cols=247 Identities=11% Similarity=0.060 Sum_probs=139.6
Q ss_pred EEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccc
Q 005093 16 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 93 (715)
..++++|+.++.. .++.. +..+...+...+|||||++||.....+ ...+| ..++..+.... ...
T Consensus 125 ~tV~lWd~~tg~~--~~~~~--~~~~~~~V~sv~fspdg~~lasgs~Dg-----~v~iWd~~~~~~~~~~~~---h~~-- 190 (420)
T 4gga_A 125 NSVYLWSASSGDI--LQLLQ--MEQPGEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMTS---HSA-- 190 (420)
T ss_dssp TEEEEEETTTCCE--EEEEE--CCSTTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC---CSS--
T ss_pred CEEEEEECCCCCE--EEEEE--ecCCCCcEEEEEECCCCCEEEEEECCC-----eEEEEEcCCCcEEEEEeC---CCC--
Confidence 4566666765532 22211 111224589999999999998765543 34556 34433332221 111
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 173 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 173 (715)
....+++|++.|+..+. ...++++|.....
T Consensus 191 ------~v~~~s~~~~~l~sgs~--------------------------------------------d~~i~~~d~~~~~ 220 (420)
T 4gga_A 191 ------RVGSLSWNSYILSSGSR--------------------------------------------SGHIHHHDVRVAE 220 (420)
T ss_dssp ------CEEEEEEETTEEEEEET--------------------------------------------TSEEEEEETTSSS
T ss_pred ------ceEEEeeCCCEEEEEeC--------------------------------------------CCceeEeeecccc
Confidence 12344556666655322 2567888876544
Q ss_pred eE--eecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC
Q 005093 174 VQ--AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 251 (715)
Q Consensus 174 ~~--~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (715)
.. .+ ......+....|+|+|+. ++... .+..+.++++ ..+
T Consensus 221 ~~~~~~--~~h~~~~~~~~~~~~g~~----l~s~~---------------~D~~v~i~~~-----------------~~~ 262 (420)
T 4gga_A 221 HHVATL--SGHSQEVCGLRWAPDGRH----LASGG---------------NDNLVNVWPS-----------------APG 262 (420)
T ss_dssp CEEEEE--ECCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEES-----------------SCC
T ss_pred eeeEEe--cccccceeeeeecCCCCe----eeeee---------------ccccceEEee-----------------ccc
Confidence 32 23 223335667899999997 66554 2235666665 322
Q ss_pred C-----ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCC
Q 005093 252 P-----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC 326 (715)
Q Consensus 252 ~-----~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~ 326 (715)
+ ..........+....|+|++..++.+.... ....|.++|+.++....... .
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs--------~D~~I~iwd~~t~~~~~~~~----------~----- 319 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT--------SDRHIRIWNVCSGACLSAVD----------A----- 319 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT--------TTCEEEEEETTTTEEEEEEE----------C-----
T ss_pred cccceeeeeecccCCceeeeeeCCCcccEEEEEeec--------CCCEEEEEeCCccccceeec----------c-----
Confidence 2 233444556688899999988877654321 12358888987754321100 0
Q ss_pred ccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cCCCCCceeEEEeecCCEEEE
Q 005093 327 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIA 393 (715)
Q Consensus 327 ~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~~~~~l~~ 393 (715)
...+....|+++++.++..+. .....|..+|+.+++.... ......+....|++++..|+.
T Consensus 320 -----~~~v~~~~~~~~~~~lv~~sg-~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 320 -----HSQVCSILWSPHYKELISGHG-FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp -----SSCEEEEEEETTTTEEEEEEC-TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred -----ccceeeeeecCCCCeEEEEEe-cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 012345568999997766543 2234577778888776554 333344555678888876654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.65 E-value=8.9e-07 Score=91.48 Aligned_cols=126 Identities=14% Similarity=0.054 Sum_probs=76.1
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceEEeeCCC----CceEEEEecCCCCCCeEEEEe--cCCccEEEEe-cCccc
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPS----GSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQTV 89 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spd----g~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~ 89 (715)
.|.++++.+... ...+.....+...+.+...+|||+ |+.|+.....+ ...+| ..++....+. ....
T Consensus 45 ~v~vw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~~- 117 (366)
T 3k26_A 45 RVTLYECHSQGE-IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG-----IIRIINPITMQCIKHYVGHGNA- 117 (366)
T ss_dssp EEEEEEECGGGC-EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC-----EEEEECTTTCCEEEEEESCCSC-
T ss_pred EEEEEEcCCCcE-EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC-----EEEEEEchhceEeeeecCCCCc-
Confidence 566666765432 222322221122356889999999 56777665442 44555 4444444333 1222
Q ss_pred cccccCCCcccceeecC-CCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEE
Q 005093 90 HGSVYADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 168 (715)
Q Consensus 90 ~~~~~~~~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (715)
+..+.|+| +++.|+..+. ...|.+||
T Consensus 118 ---------i~~~~~~~~~~~~l~s~~~--------------------------------------------dg~i~iwd 144 (366)
T 3k26_A 118 ---------INELKFHPRDPNLLLSVSK--------------------------------------------DHALRLWN 144 (366)
T ss_dssp ---------EEEEEECSSCTTEEEEEET--------------------------------------------TSCEEEEE
T ss_pred ---------EEEEEECCCCCCEEEEEeC--------------------------------------------CCeEEEEE
Confidence 37999999 8887776532 25699999
Q ss_pred ccCCceEeecC--CCCCCccceEEEecCCCCCccEEEEEe
Q 005093 169 INSGEVQAVKG--IPKSLSVGQVVWAPLNEGLHQYLVFVG 206 (715)
Q Consensus 169 ~~~g~~~~l~~--~~~~~~~~~~~~spdg~~~~~~i~~~~ 206 (715)
+.+++...... ......+..+.|+|||+. |+...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~ 180 (366)
T 3k26_A 145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEK----IMSCG 180 (366)
T ss_dssp TTTTEEEEEECSTTSCSSCEEEEEECTTSSE----EEEEE
T ss_pred eecCeEEEEecccccccCceeEEEECCCCCE----EEEec
Confidence 99887655410 123446788999999987 66554
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-06 Score=87.73 Aligned_cols=276 Identities=14% Similarity=0.108 Sum_probs=136.9
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHG 91 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 91 (715)
.+..|.++|+......... ....+......+....|||||+.|+.....+ ...+| ..+...........
T Consensus 59 ~D~~i~vWd~~~~~~~~~~-~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~~~~--- 129 (340)
T 4aow_A 59 RDKTIIMWKLTRDETNYGI-PQRALRGHSHFVSDVVISSDGQFALSGSWDG-----TLRLWDLTTGTTTRRFVGHTK--- 129 (340)
T ss_dssp TTSCEEEEEECCSSSCSEE-EEEEECCCSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSS---
T ss_pred CCCeEEEEECCCCCcccce-eeEEEeCCCCCEEEEEECCCCCEEEEEcccc-----cceEEeecccceeeeecCCCC---
Confidence 4445666667655422111 0111222336689999999999998765543 33344 23222222221111
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCC-CCCCcCCCCCCCCCcccCCcCccc--CCccCceEEEEE
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GSSDKDCNSWKGQGDWEEDWGETY--AGKRQPSLFVIN 168 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~l~~~~ 168 (715)
......++|+++.|+..+.+.... .+....... ...............+.++....+ .......|.+||
T Consensus 130 ------~~~~~~~~~~~~~l~s~s~d~~~~--~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d 201 (340)
T 4aow_A 130 ------DVLSVAFSSDNRQIVSGSRDKTIK--LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201 (340)
T ss_dssp ------CEEEEEECTTSSCEEEEETTSCEE--EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred ------ceeEEEEeecCccceeecCCCeEE--EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEE
Confidence 125778999999887765443221 111100000 000000111111222332211111 122346799999
Q ss_pred ccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCC
Q 005093 169 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 248 (715)
Q Consensus 169 ~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (715)
+.+++..... ......+..++|+|||+. |+..+ .+..|.++|+
T Consensus 202 ~~~~~~~~~~-~~h~~~v~~~~~s~~~~~----l~s~s---------------~Dg~i~iwd~----------------- 244 (340)
T 4aow_A 202 LANCKLKTNH-IGHTGYLNTVTVSPDGSL----CASGG---------------KDGQAMLWDL----------------- 244 (340)
T ss_dssp TTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTCEEEEEET-----------------
T ss_pred CCCCceeeEe-cCCCCcEEEEEECCCCCE----EEEEe---------------CCCeEEEEEe-----------------
Confidence 9988765441 233446778999999986 66543 2236778886
Q ss_pred CCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcc
Q 005093 249 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 328 (715)
Q Consensus 249 ~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~ 328 (715)
.+............+....|+|++..++ .+.+ ..|.++|+.++......... ... ....
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d-----------~~i~iwd~~~~~~~~~~~~~--~~~-------~~~~ 303 (340)
T 4aow_A 245 NEGKHLYTLDGGDIINALCFSPNRYWLC-AATG-----------PSIKIWDLEGKIIVDELKQE--VIS-------TSSK 303 (340)
T ss_dssp TTTEEEEEEECSSCEEEEEECSSSSEEE-EEET-----------TEEEEEETTTTEEEEEECCC----------------
T ss_pred ccCceeeeecCCceEEeeecCCCCceee-ccCC-----------CEEEEEECCCCeEEEecccc--cee-------eecc
Confidence 4444333333344577889999987554 3322 24788887764321100000 000 0000
Q ss_pred ccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 005093 329 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 368 (715)
Q Consensus 329 g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~ 368 (715)
.+...+..++|+|||+.| ++...++..+|| |+.+|.
T Consensus 304 -~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW--~~~tGt 339 (340)
T 4aow_A 304 -AEPPQCTSLAWSADGQTL-FAGYTDNLVRVW--QVTIGT 339 (340)
T ss_dssp -CCCCCEEEEEECTTSSEE-EEEETTSCEEEE--EEEC--
T ss_pred -CCCCCEEEEEECCCCCEE-EEEeCCCEEEEE--eCCCcC
Confidence 011234567899999854 555555555555 555664
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-08 Score=98.89 Aligned_cols=97 Identities=11% Similarity=0.011 Sum_probs=67.4
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
+..|.||++||.+.. ...|..++..|. +.|+++|+++.. ....++++.+.+..++... ..
T Consensus 22 ~~~~~l~~~hg~~~~--~~~~~~~~~~L~---~~v~~~d~~~~~--------------~~~~~~~~a~~~~~~i~~~-~~ 81 (283)
T 3tjm_A 22 SSERPLFLVHPIEGS--TTVFHSLASRLS---IPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQV-QP 81 (283)
T ss_dssp SSSCCEEEECCTTCC--SGGGHHHHHHCS---SCEEEECCCTTS--------------CCSCHHHHHHHHHHHHTTT-CC
T ss_pred CCCCeEEEECCCCCC--HHHHHHHHHhcC---ceEEEEecCCCC--------------CCCCHHHHHHHHHHHHHHh-CC
Confidence 345678999996654 457777777775 999999996521 1123555555444444332 12
Q ss_pred CceEEEEEeChhHHHHHHHHhhC---CCcee---EEEecCCcc
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQA---PDKFV---AAAARNPLC 595 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~---p~~~~---~~v~~~~~~ 595 (715)
..++.|+||||||.+++.+|.+. |+++. +++++++..
T Consensus 82 ~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~~ 124 (283)
T 3tjm_A 82 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGSP 124 (283)
T ss_dssp SSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCCT
T ss_pred CCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCCc
Confidence 36899999999999999998865 77888 888887643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-06 Score=87.64 Aligned_cols=237 Identities=11% Similarity=0.099 Sum_probs=126.9
Q ss_pred cceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCC--CceEEEEecCCCCCCeEEEEe--cCCccEEEEecCcc
Q 005093 13 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQT 88 (715)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spd--g~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 88 (715)
.....+.++|+.++..... ..+..+.+.+...+|||+ |+.||-.+..+ ...+| ..++...+..+. +
T Consensus 32 s~D~~v~lwd~~~~~~~~~----~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~~-~ 101 (316)
T 3bg1_A 32 SSDRSVKIFDVRNGGQILI----ADLRGHEGPVWQVAWAHPMYGNILASCSYDR-----KVIIWREENGTWEKSHEHA-G 101 (316)
T ss_dssp ETTTEEEEEEEETTEEEEE----EEEECCSSCEEEEEECCGGGSSCEEEEETTS-----CEEEECCSSSCCCEEEEEC-C
T ss_pred eCCCeEEEEEecCCCcEEE----EEEcCCCccEEEEEeCCCCCCCEEEEEECCC-----EEEEEECCCCcceEEEEcc-C
Confidence 3455666767765432111 112233467899999874 88887665442 34556 333322222221 1
Q ss_pred ccccccCCCcccceeecCC--CCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEE
Q 005093 89 VHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV 166 (715)
Q Consensus 89 ~~~~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (715)
..+ .+..+.|+|| |+.|+..+. ...|.+
T Consensus 102 h~~------~V~~v~~~p~~~g~~lasgs~--------------------------------------------D~~i~l 131 (316)
T 3bg1_A 102 HDS------SVNSVCWAPHDYGLILACGSS--------------------------------------------DGAISL 131 (316)
T ss_dssp CSS------CCCEEEECCTTTCSCEEEECS--------------------------------------------SSCEEE
T ss_pred CCC------ceEEEEECCCCCCcEEEEEcC--------------------------------------------CCCEEE
Confidence 111 2379999998 666666432 256888
Q ss_pred EEccCCceEe-ec-CCCCCCccceEEEecCC-----------------CCCccEEEEEeecCccceeeeeeeecCCceEE
Q 005093 167 ININSGEVQA-VK-GIPKSLSVGQVVWAPLN-----------------EGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 227 (715)
Q Consensus 167 ~~~~~g~~~~-l~-~~~~~~~~~~~~~spdg-----------------~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~ 227 (715)
||+.++.... .. -......+..+.|+|++ +. |+..+ .+..|.
T Consensus 132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~sgs---------------~D~~v~ 192 (316)
T 3bg1_A 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR----FASGG---------------CDNLIK 192 (316)
T ss_dssp EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCB----EECCB---------------TTSBCC
T ss_pred EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccce----EEEec---------------CCCeEE
Confidence 9987763221 11 01223356678999984 22 33221 222455
Q ss_pred EEecccccchhhhhhhhccCCCCC---CceecCCCCccccceeEcCCC----CeEEEEecCCCCCCCCccccceeEeeec
Q 005093 228 AVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSPDG----KFLVFLSAKSSVDSGAHSATDSLHRIDW 300 (715)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~~~~spdg----~~l~~~~~~~~~~~g~~~~~~~l~~~~~ 300 (715)
++|+. ..+ ....+..+...+...+|+|++ +.|+-.+.+. .|.++++
T Consensus 193 lWd~~----------------~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~-----------~v~iw~~ 245 (316)
T 3bg1_A 193 LWKEE----------------EDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG-----------RVFIWTC 245 (316)
T ss_dssp EEEEC----------------TTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC-----------EEEEEEC
T ss_pred EEEeC----------------CCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC-----------eEEEEEc
Confidence 55541 222 233455566678899999997 6676555542 4777777
Q ss_pred CCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 005093 301 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 372 (715)
Q Consensus 301 ~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 372 (715)
.+......... ... .+...+..++|+|||+.| ++...++..+||..+.. |+...+
T Consensus 246 ~~~~~~~~~~~---~~~------------~~~~~v~~v~~sp~g~~l-as~~~D~~v~lw~~~~~-g~~~~~ 300 (316)
T 3bg1_A 246 DDASSNTWSPK---LLH------------KFNDVVWHVSWSITANIL-AVSGGDNKVTLWKESVD-GQWVCI 300 (316)
T ss_dssp SSTTCCCCBCC---EEE------------ECSSCEEEEEECTTTCCE-EEEESSSCEEEEEECTT-SCEEEE
T ss_pred cCccccchhhh---hhh------------cCCCcEEEEEEcCCCCEE-EEEcCCCeEEEEEECCC-CcEEEe
Confidence 65221000000 000 011234567899999854 55556677788877653 444433
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.8e-06 Score=92.92 Aligned_cols=240 Identities=8% Similarity=-0.021 Sum_probs=140.6
Q ss_pred eEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 46 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
..+.|+.|...++|+.+.+ ...+..++ .+++....+...... ..+.+||||++|+.. ..
T Consensus 157 ~~~~~~~d~~~~~~V~~~~--~~~V~viD~~t~~v~~~i~~g~~p----------~~v~~SpDGr~lyv~-~~------- 216 (567)
T 1qks_A 157 TQQMNDWDLENLFSVTLRD--AGQIALIDGSTYEIKTVLDTGYAV----------HISRLSASGRYLFVI-GR------- 216 (567)
T ss_dssp SSCCSCCCGGGEEEEEETT--TTEEEEEETTTCCEEEEEECSSCE----------EEEEECTTSCEEEEE-ET-------
T ss_pred cccccccCCCceEEEEeCC--CCeEEEEECCCCeEEEEEeCCCCc----------cceEECCCCCEEEEE-cC-------
Confidence 3456788877788887763 44788888 666665555544444 588999999987654 21
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc--CCceE-eecCCCCCCccceEEEe----cCCCC
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--SGEVQ-AVKGIPKSLSVGQVVWA----PLNEG 197 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~g~~~-~l~~~~~~~~~~~~~~s----pdg~~ 197 (715)
...|.++|+. +++.. .+ ........+.|| |||+.
T Consensus 217 ------------------------------------dg~V~viD~~~~t~~~v~~i---~~G~~P~~ia~s~~~~pDGk~ 257 (567)
T 1qks_A 217 ------------------------------------DGKVNMIDLWMKEPTTVAEI---KIGSEARSIETSKMEGWEDKY 257 (567)
T ss_dssp ------------------------------------TSEEEEEETTSSSCCEEEEE---ECCSEEEEEEECCSTTCTTTE
T ss_pred ------------------------------------CCeEEEEECCCCCCcEeEEE---ecCCCCceeEEccccCCCCCE
Confidence 1469999995 55443 33 223345688999 79996
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceec-CCC-----------Cccccc
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TES-----------ISSAFF 265 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~-----------~~~~~~ 265 (715)
++... . ....+.++|. .+.+.... ... ......
T Consensus 258 ----l~v~n-~-------------~~~~v~ViD~-----------------~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 258 ----AIAGA-Y-------------WPPQYVIMDG-----------------ETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp ----EEEEE-E-------------ETTEEEEEET-----------------TTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred ----EEEEE-c-------------cCCeEEEEEC-----------------CCCcEEEEEeccccccccccccCCCceEE
Confidence 55443 2 2236778886 44443322 111 112345
Q ss_pred eeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCC
Q 005093 266 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 345 (715)
Q Consensus 266 ~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~ 345 (715)
...|+++..+++.... ..+|+++|........++ .+ . .+.+ .....|++||+
T Consensus 303 i~~s~~~~~~vv~~~~----------~g~v~~vd~~~~~~~~v~-------~i-~---~~~~-------~~d~~~~pdgr 354 (567)
T 1qks_A 303 ILASHYRPEFIVNVKE----------TGKILLVDYTDLNNLKTT-------EI-S---AERF-------LHDGGLDGSHR 354 (567)
T ss_dssp EEECSSSSEEEEEETT----------TTEEEEEETTCSSEEEEE-------EE-E---CCSS-------EEEEEECTTSC
T ss_pred EEEcCCCCEEEEEecC----------CCeEEEEecCCCccceee-------ee-e---cccc-------ccCceECCCCC
Confidence 6678888766555433 236899997664321111 10 0 0111 12446999999
Q ss_pred EEEEEeeeCCeeEEEEEECCCCcEEEecCC-CC-Cc--eeEE-EeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 346 TMLLSSIWGSSQVIISVNVSSGELLRITPA-ES-NF--SWSL-LTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 346 ~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~-~~--~~~~-~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
+++..... ...|..+|++++++...... .. .+ .... +.++++.++++..-. ...|.+++..+
T Consensus 355 ~~~va~~~--sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g--~~~Vsvid~~~ 421 (567)
T 1qks_A 355 YFITAANA--RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG--DDSVALIGTDP 421 (567)
T ss_dssp EEEEEEGG--GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCT
T ss_pred EEEEEeCC--CCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC--CCeEEEecCCC
Confidence 77765543 45688899999987765443 21 11 1222 456667776554322 23477777654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=7.7e-06 Score=80.58 Aligned_cols=180 Identities=8% Similarity=-0.042 Sum_probs=109.4
Q ss_pred ceEEEEEccCCceEeecCCCCC-CccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~-~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
..|++++++++....+ .... .....++++|++.. |+++.. ....|+++++
T Consensus 58 ~~I~~~~~~g~~~~~~--~~~~~~~p~~ia~d~~~~~----lyv~d~--------------~~~~I~~~~~--------- 108 (267)
T 1npe_A 58 PSIGRASLHGGEPTTI--IRQDLGSPEGIALDHLGRT----IFWTDS--------------QLDRIEVAKM--------- 108 (267)
T ss_dssp TEEEEEESSSCCCEEE--ECTTCCCEEEEEEETTTTE----EEEEET--------------TTTEEEEEET---------
T ss_pred CEEEEEecCCCCcEEE--EECCCCCccEEEEEecCCe----EEEEEC--------------CCCEEEEEEc---------
Confidence 6799999988766555 2222 34667889998876 666541 2247899986
Q ss_pred hhhhccCCCCCCceecCCC-CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 241 LELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 241 ~~~~~~~~~~~~~~~lt~~-~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
++...+.+... .......+++|++.+|+++.... ....|+++++++...+.+..
T Consensus 109 --------~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~--------~~~~I~~~~~dg~~~~~~~~--------- 163 (267)
T 1npe_A 109 --------DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--------DNPKIETSHMDGTNRRILAQ--------- 163 (267)
T ss_dssp --------TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--------SSCEEEEEETTSCCCEEEEC---------
T ss_pred --------CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC--------CCcEEEEEecCCCCcEEEEE---------
Confidence 44443333322 23467788999988898876431 12468888876533211110
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCC
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 399 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~ 399 (715)
. ... .+..++++++++.||++.. +...|+++|++++..+.+..... .-..++.+++.++++....
T Consensus 164 -~--~~~-------~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d~~~lyva~~~~- 228 (267)
T 1npe_A 164 -D--NLG-------LPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSYGKNLYYTDWKT- 228 (267)
T ss_dssp -T--TCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCC--SEEEEEEETTEEEEEETTT-
T ss_pred -C--CCC-------CCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCC--CceEEEEeCCEEEEEECCC-
Confidence 0 000 2345678888888887654 34589999997666555543322 1234566778887755332
Q ss_pred CCCeEEEEeeccc
Q 005093 400 DVPQVKYGYFVDK 412 (715)
Q Consensus 400 ~p~~l~~~~~~~~ 412 (715)
.+|++++..++
T Consensus 229 --~~v~~~d~~~g 239 (267)
T 1npe_A 229 --NSVIAMDLAIS 239 (267)
T ss_dssp --TEEEEEETTTT
T ss_pred --CeEEEEeCCCC
Confidence 35888776543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.7e-06 Score=85.27 Aligned_cols=221 Identities=11% Similarity=0.036 Sum_probs=124.9
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
+......+|+|+|+ | |+.+. ....++.++ .++....+....... . +.|+|+|+.|+.....
T Consensus 130 ~~~P~~la~d~~g~-l-yv~d~--~~~~I~~id~~~g~~~~~~~~~~~~----------~-ia~~~~g~~l~~~d~~--- 191 (409)
T 3hrp_A 130 FKYMWGIAAVGNNT-V-LAYQR--DDPRVRLISVDDNKVTTVHPGFKGG----------K-PAVTKDKQRVYSIGWE--- 191 (409)
T ss_dssp CCCEEEEEECSTTE-E-EEEET--TTTEEEEEETTTTEEEEEEETCCBC----------B-CEECTTSSEEEEEBSS---
T ss_pred cCCceEEEEeCCCC-E-EEEec--CCCcEEEEECCCCEEEEeeccCCCC----------c-eeEecCCCcEEEEecC---
Confidence 35677889999997 4 44443 334677777 556655554432222 4 9999999977664221
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE-eecC-CC-CCCccceEEEecCCCC
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKG-IP-KSLSVGQVVWAPLNEG 197 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~l~~-~~-~~~~~~~~~~spdg~~ 197 (715)
....|++++.+++... .+.. .. .......++++|++..
T Consensus 192 ---------------------------------------~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~ 232 (409)
T 3hrp_A 192 ---------------------------------------GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW 232 (409)
T ss_dssp ---------------------------------------TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE
T ss_pred ---------------------------------------CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe
Confidence 1137999999876542 2200 11 2234567899996665
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceec----CCC-Cccc-c-ceeEcC
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL----TES-ISSA-F-FPRFSP 270 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----t~~-~~~~-~-~~~~sp 270 (715)
|++.. ....|+++|+ +++....+ ... .... . ..+|+|
T Consensus 233 ----lyv~d---------------~~~~I~~~d~-----------------~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 233 ----LYFVD---------------SNKNFGRFNV-----------------KTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp ----EEEEC---------------TTCEEEEEET-----------------TTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred ----EEEEE---------------CCCcEEEEEC-----------------CCCCEEEEecccccCCCCCCccccEEEeC
Confidence 66632 1236999996 55554443 221 1222 3 789999
Q ss_pred CCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee-cCCCCCccccccCCCCCCccccCCCEEEE
Q 005093 271 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ-CAEGDCFPGLYSSSILSNPWLSDGCTMLL 349 (715)
Q Consensus 271 dg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~dg~~l~~ 349 (715)
++..|+++.... ..|++++.++. ...+.... ....... ......| ..+..++++++|+ ||+
T Consensus 277 ~~g~lyv~d~~~----------~~I~~~~~~g~-~~~~~g~~-~~~g~~dg~~~~~~~-----~~P~gia~d~dG~-lyv 338 (409)
T 3hrp_A 277 VDSNFYMSDQNL----------SSVYKITPDGE-CEWFCGSA-TQKTVQDGLREEALF-----AQPNGMTVDEDGN-FYI 338 (409)
T ss_dssp TTTEEEEEETTT----------TEEEEECTTCC-EEEEEECT-TCCSCBCEEGGGCBC-----SSEEEEEECTTCC-EEE
T ss_pred CCCEEEEEeCCC----------CEEEEEecCCC-EEEEEeCC-CCCCcCCCcccccEe-----CCCeEEEEeCCCC-EEE
Confidence 878887765442 36888886653 11110000 0000000 0000001 1234677899998 666
Q ss_pred EeeeC-CeeEEEEEECCCCcEEEecCC
Q 005093 350 SSIWG-SSQVIISVNVSSGELLRITPA 375 (715)
Q Consensus 350 ~~~~~-~~~~l~~~d~~tg~~~~l~~~ 375 (715)
+- . +..+|.++++.+|++..+...
T Consensus 339 ad--~~~~~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 339 VD--GFKGYCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp EE--TTTTCEEEEEETTTTEEEEEEEC
T ss_pred Ee--CCCCCEEEEEECCCCEEEEEeCC
Confidence 53 3 556899999878888777543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.4e-06 Score=87.26 Aligned_cols=91 Identities=9% Similarity=0.048 Sum_probs=49.2
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCC--CCceEEEEecCCCCCCeEEEEecCCc-----c-EEEEec
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP--SGSKLLVVRNPENESPIQFELWSQSQ-----L-EKEFHV 85 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp--dg~~la~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~ 85 (715)
....|.++++.........+ ..+....+.+...+|+| ||+.|+..... +.-.+|.+..+.. . ..+...
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d--g~v~vwd~~~~~~~~~~~~~~~~~~~ 106 (351)
T 3f3f_A 31 SDQHIKVFKLDKDTSNWELS--DSWRAHDSSIVAIDWASPEYGRIIASASYD--KTVKLWEEDPDQEECSGRRWNKLCTL 106 (351)
T ss_dssp TTSEEEEEEECSSSCCEEEE--EEEECCSSCEEEEEECCGGGCSEEEEEETT--SCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred CCCeEEEEECCCCCCcceec--ceeccCCCcEEEEEEcCCCCCCEEEEEcCC--CeEEEEecCCCcccccccCcceeeee
Confidence 44567777777654321111 11222336789999999 69988876554 3333444332211 0 222222
Q ss_pred CccccccccCCCcccceeecCC--CCeEEEEe
Q 005093 86 PQTVHGSVYADGWFEGISWNSD--ETLIAYVA 115 (715)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~wSpD--g~~la~~~ 115 (715)
. ...+ .+..+.|+|+ ++.|+..+
T Consensus 107 ~-~~~~------~v~~~~~~~~~~~~~l~~~~ 131 (351)
T 3f3f_A 107 N-DSKG------SLYSVKFAPAHLGLKLACLG 131 (351)
T ss_dssp C-CCSS------CEEEEEECCGGGCSEEEEEE
T ss_pred c-ccCC------ceeEEEEcCCCCCcEEEEec
Confidence 1 1111 2378999999 88887753
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-05 Score=81.93 Aligned_cols=200 Identities=12% Similarity=0.038 Sum_probs=109.7
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCcc-ccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
+.+....|||+ .||-.... + ...+| ..+....+..+... ..+ .+..++|||||+.|+..+.+
T Consensus 15 ~~v~~~~~s~~--~las~~~D--~---~i~lw~~~~~~~~~~~~~~~~~h~~------~v~~v~~sp~~~~las~s~D-- 79 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTD--R---KIKLVSVKYDDFTLIDVLDETAHKK------AIRSVAWRPHTSLLAAGSFD-- 79 (330)
T ss_dssp SCEEEEEEETT--EEEEEESS--S---CEEEEECSSSCCEEEEEECTTCCCS------CEEEEEECTTSSEEEEEETT--
T ss_pred CceeeeccCCC--EEEEEcCC--C---EEEEEEecCCCeEEEEEEecCCccC------CEEEEEECCCCCEEEEEeCC--
Confidence 56788899998 56554433 2 23444 23222222222112 212 23789999999988775432
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc--------eEeecCCCCCCccceEEE
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--------VQAVKGIPKSLSVGQVVW 191 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~--------~~~l~~~~~~~~~~~~~~ 191 (715)
..|.+|+++++. ...+ ......+..++|
T Consensus 80 ------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~ 115 (330)
T 2hes_X 80 ------------------------------------------STVSIWAKEESADRTFEMDLLAII--EGHENEVKGVAW 115 (330)
T ss_dssp ------------------------------------------SCEEEEEC-------CCCEEEEEE--C----CEEEEEE
T ss_pred ------------------------------------------CcEEEEEcccCcCccccceeEEEE--cCCCCcEEEEEE
Confidence 457777774321 1223 222345778999
Q ss_pred ecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC----CceecCCCCcccccee
Q 005093 192 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL----PVVNLTESISSAFFPR 267 (715)
Q Consensus 192 spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lt~~~~~~~~~~ 267 (715)
+|||+. |+..+ .+..|.++|+. ..+ ....+..+...+....
T Consensus 116 sp~g~~----las~s---------------~D~~v~iwd~~----------------~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 116 SNDGYY----LATCS---------------RDKSVWIWETD----------------ESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CTTSCE----EEEEE---------------TTSCEEEEECC----------------TTCCCCEEEEEECCCSSCEEEEE
T ss_pred CCCCCE----EEEEe---------------CCCEEEEEecc----------------CCCCCeEEEEEeccCCCceEEEE
Confidence 999997 66554 22356666751 121 1234555666788999
Q ss_pred EcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCC-E
Q 005093 268 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC-T 346 (715)
Q Consensus 268 ~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~-~ 346 (715)
|+|||+.|+-.+.+. .|.++|..++....+ ... .+ +...+..+.|+|++. .
T Consensus 161 ~~p~~~~l~s~s~D~-----------~i~iW~~~~~~~~~~--------~~~--------~~-h~~~v~~~~~~~~~~~~ 212 (330)
T 2hes_X 161 WHPSEALLASSSYDD-----------TVRIWKDYDDDWECV--------AVL--------NG-HEGTVWSSDFDKTEGVF 212 (330)
T ss_dssp ECSSSSEEEEEETTS-----------CEEEEEEETTEEEEE--------EEE--------CC-CSSCEEEEEECCSSSSC
T ss_pred ECCCCCEEEEEcCCC-----------eEEEEECCCCCeeEE--------EEc--------cC-CCCcEEEEEecCCCCee
Confidence 999999888766553 366666544321100 000 00 111334567888832 3
Q ss_pred EEEEeeeCCeeEEEEEEC
Q 005093 347 MLLSSIWGSSQVIISVNV 364 (715)
Q Consensus 347 l~~~~~~~~~~~l~~~d~ 364 (715)
.+++...++..+||.+..
T Consensus 213 ~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 213 RLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EEEEEETTSCEEEEEEEE
T ss_pred EEEEEeCCCeEEEEEecC
Confidence 556666677777876653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.2e-06 Score=86.59 Aligned_cols=204 Identities=13% Similarity=0.069 Sum_probs=114.7
Q ss_pred cccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEec--CccccccccCCCcccceeecC-CCCeEEEE
Q 005093 40 VEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV--PQTVHGSVYADGWFEGISWNS-DETLIAYV 114 (715)
Q Consensus 40 ~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~wSp-Dg~~la~~ 114 (715)
.+.+.+....|+|++...++....+ ....+| ..++....... ..+... .+..+.|+| +++.|+..
T Consensus 155 gh~~~v~~~~~~~~~~~~l~s~s~D----~~i~~wd~~~~~~~~~~~~~~~~~h~~------~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 155 GHKGYASSCQYVPDQETRLITGSGD----QTCVLWDVTTGQRISIFGSEFPSGHTA------DVLSLSINSLNANMFISG 224 (380)
T ss_dssp CCSSCCCCCBCCSSSSSCEEEECTT----SCEEEECTTTCCEEEEECCCSSSSCCS------CEEEEEECSSSCCEEEEE
T ss_pred CCCcceEEEEEecCCCCEEEEECCC----CcEEEEEcCCCcEEEEeecccCCCCcc------CeEEEEeecCCCCEEEEE
Confidence 3446677889999866544443332 234566 34444443321 112211 226788877 66666554
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC-Cc-eEeecCCCCCCccceEEEe
Q 005093 115 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GE-VQAVKGIPKSLSVGQVVWA 192 (715)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-g~-~~~l~~~~~~~~~~~~~~s 192 (715)
+. ...|.+||+.. ++ ...+ ......+..+.|+
T Consensus 225 s~--------------------------------------------D~~v~~wd~~~~~~~~~~~--~~h~~~v~~v~~~ 258 (380)
T 3iz6_a 225 SC--------------------------------------------DTTVRLWDLRITSRAVRTY--HGHEGDINSVKFF 258 (380)
T ss_dssp ET--------------------------------------------TSCEEEEETTTTCCCCEEE--CCCSSCCCEEEEC
T ss_pred EC--------------------------------------------CCeEEEEECCCCCcceEEE--CCcCCCeEEEEEe
Confidence 22 25689999863 33 3344 2334467889999
Q ss_pred cCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-ecCCC-------Ccccc
Q 005093 193 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-------ISSAF 264 (715)
Q Consensus 193 pdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~-------~~~~~ 264 (715)
|||+. |+..+ .+..|.++|+ .++... .+... ...+.
T Consensus 259 p~~~~----l~s~s---------------~D~~i~lwd~-----------------~~~~~~~~~~~~~~~~~~~~~~v~ 302 (380)
T 3iz6_a 259 PDGQR----FGTGS---------------DDGTCRLFDM-----------------RTGHQLQVYNREPDRNDNELPIVT 302 (380)
T ss_dssp TTSSE----EEEEC---------------SSSCEEEEET-----------------TTTEEEEEECCCCSSSCCSSCSCS
T ss_pred cCCCe----EEEEc---------------CCCeEEEEEC-----------------CCCcEEEEecccccccccccCceE
Confidence 99997 66554 2235777776 443322 22211 11367
Q ss_pred ceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCC
Q 005093 265 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 344 (715)
Q Consensus 265 ~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg 344 (715)
..+|||||+.|+-.+.+ ..|+++|+.+++.... +.. ....+...+..++|+|||
T Consensus 303 ~~~~s~~g~~l~~g~~d-----------g~i~vwd~~~~~~~~~---------~~~------~~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 303 SVAFSISGRLLFAGYSN-----------GDCYVWDTLLAEMVLN---------LGT------LQNSHEGRISCLGLSSDG 356 (380)
T ss_dssp EEEECSSSSEEEEECTT-----------SCEEEEETTTCCEEEE---------ECC------SCSSCCCCCCEEEECSSS
T ss_pred EEEECCCCCEEEEEECC-----------CCEEEEECCCCceEEE---------Eec------ccCCCCCceEEEEECCCC
Confidence 78999999988755543 2488888766443110 000 000122245677899999
Q ss_pred CEEEEEeeeCCeeEEEEE
Q 005093 345 CTMLLSSIWGSSQVIISV 362 (715)
Q Consensus 345 ~~l~~~~~~~~~~~l~~~ 362 (715)
+. +++...++...||.+
T Consensus 357 ~~-l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 357 SA-LCTGSWDKNLKIWAF 373 (380)
T ss_dssp SE-EEEECTTSCEEEEEC
T ss_pred CE-EEEeeCCCCEEEEec
Confidence 84 456666665666643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-06 Score=98.93 Aligned_cols=229 Identities=10% Similarity=0.067 Sum_probs=130.4
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCC--CceEEEEecCCCCCCeEEEEecCCccEEEEecCccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHG 91 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spd--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (715)
....|.++|+.++..... ..+..+.+.+...+|||+ |+.|+.....+ .-.+|.+ .+++...+.... ....
T Consensus 29 ~dg~I~vwd~~~~~~~~~----~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg--~I~vwd~-~~~~~~~~~~~~-~h~~ 100 (753)
T 3jro_A 29 SDKTIKIFEVEGETHKLI----DTLTGHEGPVWRVDWAHPKFGTILASCSYDG--KVLIWKE-ENGRWSQIAVHA-VHSA 100 (753)
T ss_dssp TTTEEEEEEEETTEEEEE----EEECCCSSCEEEEEECCTTSCSEEEEEETTS--CEEEEEE-ETTEEEEEEEEC-CCSS
T ss_pred CCCcEEEEecCCCCCccc----eeccCCcCceEEEEecCCCCCCEEEEEeCCC--eEEEEEC-CCCccccccccc-CCCC
Confidence 445666666764332111 112223367899999999 99888776542 2233332 344322222221 1111
Q ss_pred cccCCCcccceeecCC--CCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEc
Q 005093 92 SVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 169 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 169 (715)
.+..+.|+|+ |+.|+..+. ...|.+||+
T Consensus 101 ------~V~~v~~sp~~~~~~l~sgs~--------------------------------------------dg~I~vwdl 130 (753)
T 3jro_A 101 ------SVNSVQWAPHEYGPLLLVASS--------------------------------------------DGKVSVVEF 130 (753)
T ss_dssp ------CEEEEEECCGGGCSEEEEEET--------------------------------------------TSEEEEEEC
T ss_pred ------CeEEEEECCCCCCCEEEEEeC--------------------------------------------CCcEEEEEe
Confidence 2379999999 888877532 266999999
Q ss_pred cCCce---EeecCCCCCCccceEEEec-------------CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEeccc
Q 005093 170 NSGEV---QAVKGIPKSLSVGQVVWAP-------------LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 233 (715)
Q Consensus 170 ~~g~~---~~l~~~~~~~~~~~~~~sp-------------dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 233 (715)
.++.. ..+ ......+..+.|+| ||+. ++..+ .+..|.++|+
T Consensus 131 ~~~~~~~~~~~--~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~----l~sgs---------------~dg~I~iwd~-- 187 (753)
T 3jro_A 131 KENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVTGG---------------ADNLVKIWKY-- 187 (753)
T ss_dssp CSSSCCCCEEE--ECCSSCEEEEEECCCC---------CGGGCC----EEEEE---------------TTSCEEEEEE--
T ss_pred ecCCCcceeEe--ecCCCceEEEEecCcccccccccccCCCCCE----EEEEE---------------CCCeEEEEec--
Confidence 87732 223 23344677889999 5776 66554 2235666665
Q ss_pred ccchhhhhhhhccCCCCC-----CceecCCCCccccceeEcCC---CCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 234 YKSEASELELKESSSEDL-----PVVNLTESISSAFFPRFSPD---GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~-----~~~~lt~~~~~~~~~~~spd---g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
.++ ....+..+...+..++|+|+ |+.|+..+.+. .|.++|+.++..
T Consensus 188 ---------------~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-----------~I~iwd~~~~~~ 241 (753)
T 3jro_A 188 ---------------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-----------TCIIWTQDNEQG 241 (753)
T ss_dssp ---------------ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS-----------CEEEEEESSSSS
T ss_pred ---------------cCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC-----------EEEEecCCCCCC
Confidence 222 12344556677899999999 78777666542 378888877542
Q ss_pred CCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 005093 306 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 366 (715)
Q Consensus 306 ~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~t 366 (715)
.....-. .. . .+...+..++|+|||+.++ +...++...+| ++.+
T Consensus 242 ~~~~~~~-------~~---~----~~~~~v~~l~~spdg~~l~-s~s~Dg~I~vw--d~~~ 285 (753)
T 3jro_A 242 PWKKTLL-------KE---E----KFPDVLWRASWSLSGNVLA-LSGGDNKVTLW--KENL 285 (753)
T ss_dssp CCBCCBS-------SS---S----CCSSCCCCEEECTTTCCEE-EECSSSCEECC--BCCS
T ss_pred cceeEEe-------cc---C----CCCCceEEEEEcCCCCEEE-EEcCCCEEEEE--ecCC
Confidence 1111000 00 0 0122456788999998554 44445544444 5543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.4e-06 Score=83.96 Aligned_cols=287 Identities=13% Similarity=-0.004 Sum_probs=150.1
Q ss_pred CccccccccccccceEEEEEEEeecCCCCccccccCCCcccccc-ceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCc
Q 005093 1 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTG-ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQ 78 (715)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~ 78 (715)
+|++.+..+..+ ...|-.+|.++..-. ..+-...-....+. .....+ ++.+|..+... ...+..++ .+++
T Consensus 4 ~~v~neg~~g~~--~~~l~~~d~~t~~~~-~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~~---~~~v~viD~~t~~ 75 (328)
T 3dsm_A 4 LFITNEGNFQYS--NATLSYYDPATCEVE-NEVFYRANGFKLGDVAQSMVI--RDGIGWIVVNN---SHVIFAIDINTFK 75 (328)
T ss_dssp EEEEECCCTTSC--CBEEEEEETTTTEEE-CSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEGG---GTEEEEEETTTCC
T ss_pred EEEEecCCCCCC--CceEEEEECCCCEEh-hhhHhhhcCcccCccceEEEE--ECCEEEEEEcC---CCEEEEEECcccE
Confidence 356666666544 456666555544311 11100000001121 233344 56676555442 23577777 5566
Q ss_pred cEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCC
Q 005093 79 LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAG 158 (715)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 158 (715)
....+...... ..+.++||| +|+. +...
T Consensus 76 ~~~~i~~~~~p----------~~i~~~~~g-~lyv-~~~~---------------------------------------- 103 (328)
T 3dsm_A 76 EVGRITGFTSP----------RYIHFLSDE-KAYV-TQIW---------------------------------------- 103 (328)
T ss_dssp EEEEEECCSSE----------EEEEEEETT-EEEE-EEBS----------------------------------------
T ss_pred EEEEcCCCCCC----------cEEEEeCCC-eEEE-EECC----------------------------------------
Confidence 54433322222 688999998 5544 3311
Q ss_pred ccCceEEEEEccCCceEe-ecCCCCC----CccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEeccc
Q 005093 159 KRQPSLFVININSGEVQA-VKGIPKS----LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 233 (715)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~-l~~~~~~----~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 233 (715)
...|+++|+++++... +. .... .....+.+ ++.+ ++.+.+. ....|+++|+
T Consensus 104 --~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~--~~~~----lyv~~~~-------------~~~~v~viD~-- 159 (328)
T 3dsm_A 104 --DYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQ--YGKY----VYVNCWS-------------YQNRILKIDT-- 159 (328)
T ss_dssp --CSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEE--ETTE----EEEEECT-------------TCCEEEEEET--
T ss_pred --CCeEEEEECCCCeEEEEEE-cCCccccCCCcceEEE--ECCE----EEEEcCC-------------CCCEEEEEEC--
Confidence 2679999999988653 31 1110 03445566 4554 5444310 1237999997
Q ss_pred ccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCccccee
Q 005093 234 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 313 (715)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~ 313 (715)
++++...............++|||+ +++.................|+++|..+++...
T Consensus 160 ---------------~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~------ 217 (328)
T 3dsm_A 160 ---------------ETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK------ 217 (328)
T ss_dssp ---------------TTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE------
T ss_pred ---------------CCCeEEEEEEcCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEE------
Confidence 5555433222233456788999997 655654321000000112579999987754311
Q ss_pred eeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE--ecCC-CCCceeEEEeecCCE
Q 005093 314 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR--ITPA-ESNFSWSLLTLDGDN 390 (715)
Q Consensus 314 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~--l~~~-~~~~~~~~~s~~~~~ 390 (715)
.+.... + ..+..++++||++.+|+... .++.+|+++++... +... ........++++++.
T Consensus 218 ----~~~~~~-g-------~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~ 280 (328)
T 3dsm_A 218 ----QFKFKL-G-------DWPSEVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGE 280 (328)
T ss_dssp ----EEECCT-T-------CCCEEEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCC
T ss_pred ----EEecCC-C-------CCceeEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCe
Confidence 010000 0 02346789999998877543 79999999888632 1111 112233456776777
Q ss_pred EEEEE-eCCCCCCeEEEEeec
Q 005093 391 IIAVS-SSPVDVPQVKYGYFV 410 (715)
Q Consensus 391 l~~~~-~~~~~p~~l~~~~~~ 410 (715)
|+++. .+......|++++..
T Consensus 281 lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 281 VYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEEECTTSSSEEEEEEECTT
T ss_pred EEEEcccccccCCEEEEECCC
Confidence 77664 223345678887765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.9e-05 Score=80.38 Aligned_cols=255 Identities=13% Similarity=0.072 Sum_probs=129.8
Q ss_pred eeCCCCceEEEEecC-CCCCC-eEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCc
Q 005093 49 VPSPSGSKLLVVRNP-ENESP-IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 125 (715)
Q Consensus 49 ~~Spdg~~la~~~~~-~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 125 (715)
..+||+++ +|+.+. +.+.. .++.++ .+++....+. .+. . ..+.+||||++|++........
T Consensus 27 ~~~~~~~~-~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~--~g~--------~-p~i~~spDg~~lyv~n~~~~~~---- 90 (373)
T 2mad_H 27 APGADGRR-SYINLPAHHSAIIQQWVLDAGSGSILGHVN--GGF--------L-PNPVAAHSGSEFALASTSFSRI---- 90 (373)
T ss_pred cCCCCCCE-EEEeCCcccCCccEEEEEECCCCeEEEEec--CCC--------C-CCeEECCCCCEEEEEecccccc----
Confidence 44689965 677665 32222 667777 5555443332 222 1 3899999999998864321000
Q ss_pred cCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCC--C----CCccceEEEecCCCCCc
Q 005093 126 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP--K----SLSVGQVVWAPLNEGLH 199 (715)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~--~----~~~~~~~~~spdg~~~~ 199 (715)
..|+ ....|.++|+++.++..-.... . ......+.|||||++
T Consensus 91 -------------------------~rg~-----~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~-- 138 (373)
T 2mad_H 91 -------------------------AKGK-----RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD-- 138 (373)
T ss_pred -------------------------ccCC-----CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE--
Confidence 0011 2367889999887654321011 0 123457899999998
Q ss_pred cEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEe
Q 005093 200 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 200 ~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~ 279 (715)
|++.... ....|+++| . .......+..-.+ .+.+.|+|+..++..
T Consensus 139 --l~v~n~~-------------~~~~v~viD-~----------------t~~~~~~~i~~~~---~~~~~~~~~~~~~~~ 183 (373)
T 2mad_H 139 --LLFFQFA-------------AGPAVGLVV-Q----------------GGSSDDQLLSSPT---CYHIHPGAPSTFYLL 183 (373)
T ss_pred --EEEEecC-------------CCCeEEEEE-C----------------CCCEEeEEcCCCc---eEEEEeCCCceEEEE
Confidence 6665421 123688887 4 2222223022111 145667777665443
Q ss_pred cCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 005093 280 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359 (715)
Q Consensus 280 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l 359 (715)
..+ ..+..+++ +++..... ...... ..... ....+.+++++..+++.+. . ..+
T Consensus 184 ~~d----------g~~~~vd~-~g~~~~~~----~~~~~~-~~~~p--------~~~~~~~~~~~~~~~~~~~-~--~~v 236 (373)
T 2mad_H 184 CAQ----------GGLAKTDH-AGGAAGAG----LVGAML-TAAQN--------LLTQPAQANKSGRIVWPVY-S--GKI 236 (373)
T ss_pred cCC----------CCEEEEEC-CCcEEEEE----eccccc-cCCcc--------eeecceeEecCCEEEEEcC-C--ceE
Confidence 332 23666666 44331000 000000 00000 0112345667776777653 2 378
Q ss_pred EEEECCCCcEEEecC-----C--------CCCceeEEEeecCCEEEEEEeCCC------CCCeEEEEeecccC
Q 005093 360 ISVNVSSGELLRITP-----A--------ESNFSWSLLTLDGDNIIAVSSSPV------DVPQVKYGYFVDKA 413 (715)
Q Consensus 360 ~~~d~~tg~~~~l~~-----~--------~~~~~~~~~s~~~~~l~~~~~~~~------~p~~l~~~~~~~~~ 413 (715)
+.+|+.++..+.+.. . ........++++++++|+...... ....|+++|+.+.+
T Consensus 237 ~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~ 309 (373)
T 2mad_H 237 LQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ 309 (373)
T ss_pred EEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE
Confidence 889987664332211 0 001122457788888887664321 23468888876543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.9e-06 Score=87.14 Aligned_cols=258 Identities=13% Similarity=0.032 Sum_probs=136.7
Q ss_pred EEeeCCCCceEEEEecC------CCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 47 AVVPSPSGSKLLVVRNP------ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 47 ~~~~Spdg~~la~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
.+++||||++|+..... +.....+..++ .+++....+.++...+- . ......++.+||||++|+......
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~-~-~g~~P~~ia~SpDGk~lyVan~~~- 145 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-S-VGPRVHIIGNCASSACLLFFLFGS- 145 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC-C-BSCCTTSEEECTTSSCEEEEECSS-
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc-c-cCCCcceEEEcCCCCEEEEEccCC-
Confidence 78999999998765421 11223566666 56666665555411000 0 000126899999999987753221
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEE--EEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV--ININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
...+.+ +|+.+ ...+. ..+. +...|+|++
T Consensus 146 -----------------------------------------~~~v~V~~iD~~t--v~~i~-v~~~-----~~~~p~g~~ 176 (368)
T 1mda_H 146 -----------------------------------------SAAAGLSVPGASD--DQLTK-SASC-----FHIHPGAAA 176 (368)
T ss_dssp -----------------------------------------SCEEEEEETTTEE--EEEEE-CSSC-----CCCEEEETT
T ss_pred -----------------------------------------CCeEEEEEEchhh--ceEEE-CCCc-----eEEccCCCe
Confidence 145666 77776 44442 1111 234678887
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC-----CCcee-cCCCCccccceeEcCC
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-----LPVVN-LTESISSAFFPRFSPD 271 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-lt~~~~~~~~~~~spd 271 (715)
.++... ..+.+..+++ ++ ++... .+........|..+++
T Consensus 177 ----~~~~~~--------------~dg~~~~vd~-----------------~~~~~~~~~v~~~~t~~i~vg~~P~~~~~ 221 (368)
T 1mda_H 177 ----THYLGS--------------CPASLAASDL-----------------AAAPAAAGIVGAQCTGAQNCSSQAAQANY 221 (368)
T ss_dssp ----EEECCC--------------CTTSCEEEEC-----------------CSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred ----EEEEEc--------------CCCCEEEEEC-----------------ccccccCCeEEEEeeeeeeCCCCcccccc
Confidence 655332 1224566775 32 22211 0000000122323888
Q ss_pred CCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCC-CccccccCCCCCCccccCCCEEEEE
Q 005093 272 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD-CFPGLYSSSILSNPWLSDGCTMLLS 350 (715)
Q Consensus 272 g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~dg~~l~~~ 350 (715)
++.++|.+. . .++++|+.++....+ ..+...... ...+....+...+.+++|++++|+.
T Consensus 222 ~~~~~~vs~-~-----------~V~viD~~~~~~~v~--------~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 222 PGMLVWAVA-S-----------SILQGDIPAAGATMK--------AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp TTEEEECBS-S-----------CCEEEECCSSCCEEE--------CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred CCEEEEEcC-C-----------EEEEEECCCCcceEE--------EEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 999999886 3 388899865432111 000000000 0000000122335689999988876
Q ss_pred eeeC-C-----eeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 351 SIWG-S-----SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 351 ~~~~-~-----~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
.... + ...+..+|++++++..-...........+++|++.++++... ....|.++|+.+.+
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~--~~~~VsVID~~t~k 348 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA--GTEVLDIYDAASDQ 348 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET--TTTEEEEEESSSCE
T ss_pred eccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccC--CCCeEEEEECCCCc
Confidence 5523 2 334558999998865543322222345788999888776651 13458888876543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-06 Score=89.76 Aligned_cols=197 Identities=15% Similarity=0.047 Sum_probs=86.4
Q ss_pred ceEEEEEccCCceE-eecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 162 PSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 162 ~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
..|.+||+.++... .+ ......+..++|+|++.. ++.++..+ ..|.++|+..... ...
T Consensus 166 ~tv~~Wd~~~~~~~~~~--~~~~~~v~~v~~~p~~~~----~l~~~~~d--------------~~v~~wd~~t~~~-~~~ 224 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAG--YPLSSPGISVQFRPSNPN----QLIVGERN--------------GNIRIFDWTLNLS-AEE 224 (393)
T ss_dssp SEEEEEEEETTEEEEEE--EECSSCEEEEEEETTEEE----EEEEEETT--------------SEEEEEETTCCC-----
T ss_pred CeEEEEECCCCceeeee--cCCCCCcEEEEECCCCCc----eEEecCCC--------------CEEEEEECCCCcc-ccc
Confidence 67999999776543 33 233345678999999976 66655322 2455666510000 000
Q ss_pred hhhhccCC----------CCCCceecCCCCccccceeEc-CCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC-Cc
Q 005093 241 LELKESSS----------EDLPVVNLTESISSAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SS 308 (715)
Q Consensus 241 ~~~~~~~~----------~~~~~~~lt~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~l 308 (715)
........ ...................|+ |||+.|+-.+.+. .+.++|+.++... .+
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~-----------~i~vwd~~~~~~~~~l 293 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG-----------AWLRWNLFANNDYNEI 293 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS-----------EEEEEEC---------
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCC-----------CEEEEECccCCCCceE
Confidence 00000000 000000111223345566775 8999887665442 4667777654431 11
Q ss_pred ccceeeeeeceecCCCCCccccc-cCCCCCCcccc-CCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cCCCCCceeEEEe
Q 005093 309 LEKIVDVIPVVQCAEGDCFPGLY-SSSILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLT 385 (715)
Q Consensus 309 t~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s 385 (715)
......+ ..... .....+.- ........|.+ .++.++.+...++ .+..+|..+++.... ......+....|+
T Consensus 294 ~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg--~V~lwd~~~~~~~~~~~~~~~~V~svafs 368 (393)
T 4gq1_A 294 SDSTMKL-GPKNL--LPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG--LIQLINTYEKDSNSIPIQLGMPIVDFCWH 368 (393)
T ss_dssp -----------CC--SCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT--EEEEEETTCTTCCEEEEECSSCEEEEEEC
T ss_pred eeecCcc-ccEEE--ccccccccccCcceeEEEccCCCCEEEEEECCCC--EEEEEECCCCcEEEEecCCCCcEEEEEEc
Confidence 1111000 00000 00000000 00112233433 3444555544444 556668877765443 3333345556899
Q ss_pred ecCCEEEEEE
Q 005093 386 LDGDNIIAVS 395 (715)
Q Consensus 386 ~~~~~l~~~~ 395 (715)
++|+.|+...
T Consensus 369 pdG~~LA~as 378 (393)
T 4gq1_A 369 QDGSHLAIAT 378 (393)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999887654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-05 Score=76.96 Aligned_cols=232 Identities=9% Similarity=0.084 Sum_probs=134.1
Q ss_pred EEEEEEEeecCCCCccccccCC-CccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccc
Q 005093 16 KFMLSTVISKENENSVTFQWAP-FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 93 (715)
..|+.+++++... .++...+ +.........++|+|+++.|+++.. ....++.+. .++....+.... .
T Consensus 10 ~~I~~~~~~g~~~--~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~---~~~~I~~~~~~g~~~~~~~~~~--~---- 78 (267)
T 1npe_A 10 GKIERLPLERNTM--KKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI---SEPSIGRASLHGGEPTTIIRQD--L---- 78 (267)
T ss_dssp EEEEEEEESSSCB--CGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET---TTTEEEEEESSSCCCEEEECTT--C----
T ss_pred CeEEEEEecCccc--ccccceeeecCCCCcEEEEEEecCCCEEEEEEC---CCCEEEEEecCCCCcEEEEECC--C----
Confidence 3688888776543 1111011 1111234678899999998877644 334677777 444444333211 1
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 173 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 173 (715)
....++.++|++++|++... ....|+++++++..
T Consensus 79 ---~~p~~ia~d~~~~~lyv~d~-------------------------------------------~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 79 ---GSPEGIALDHLGRTIFWTDS-------------------------------------------QLDRIEVAKMDGTQ 112 (267)
T ss_dssp ---CCEEEEEEETTTTEEEEEET-------------------------------------------TTTEEEEEETTSCS
T ss_pred ---CCccEEEEEecCCeEEEEEC-------------------------------------------CCCEEEEEEcCCCC
Confidence 01268899999888876521 12678999998765
Q ss_pred eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc
Q 005093 174 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 253 (715)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (715)
.+.+. ...-.....++++|++.. |+++.... ....|+++++ ++...
T Consensus 113 ~~~~~-~~~~~~P~~i~vd~~~g~----lyv~~~~~------------~~~~I~~~~~-----------------dg~~~ 158 (267)
T 1npe_A 113 RRVLF-DTGLVNPRGIVTDPVRGN----LYWTDWNR------------DNPKIETSHM-----------------DGTNR 158 (267)
T ss_dssp CEEEE-CSSCSSEEEEEEETTTTE----EEEEECCS------------SSCEEEEEET-----------------TSCCC
T ss_pred EEEEE-ECCCCCccEEEEeeCCCE----EEEEECCC------------CCcEEEEEec-----------------CCCCc
Confidence 55442 112134567889998876 66654210 1247888886 44443
Q ss_pred eecC-CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccccc
Q 005093 254 VNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 332 (715)
Q Consensus 254 ~~lt-~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~ 332 (715)
+.+. .........+++||+++|+++.... ..|+++++++...+.+ .. ....|
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~----------~~I~~~~~~g~~~~~~----------~~---~~~~P---- 211 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGT----------HRAECLNPAQPGRRKV----------LE---GLQYP---- 211 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTT----------TEEEEEETTEEEEEEE----------EE---CCCSE----
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEECCC----------CEEEEEecCCCceEEE----------ec---CCCCc----
Confidence 3332 2333567789999999998877553 4689999875322111 10 01111
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 005093 333 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 372 (715)
Q Consensus 333 ~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 372 (715)
.. ...|+..+|++.. +...|+++|.++|+....
T Consensus 212 ---~g--i~~d~~~lyva~~--~~~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 212 ---FA--VTSYGKNLYYTDW--KTNSVIAMDLAISKEMDT 244 (267)
T ss_dssp ---EE--EEEETTEEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred ---eE--EEEeCCEEEEEEC--CCCeEEEEeCCCCCceEE
Confidence 12 2345666777433 335789999988876544
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.9e-06 Score=88.57 Aligned_cols=231 Identities=10% Similarity=0.024 Sum_probs=121.0
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCcccccccc----CCCccccee--ecCCCCeEEEE
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVY----ADGWFEGIS--WNSDETLIAYV 114 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--wSpDg~~la~~ 114 (715)
+.+...+|+|+++.|+..... +.-.+|.+. ..++..+..... .++...+ ..+.+..+. |+||++.|+..
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKD--GQIIVLKVNHYQQESEVKFLNCE-CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETT--SEEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCC--CEEEEEEeccccCCceeeccccc-eeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 668999999999999876554 333455443 234333322211 1100000 001112333 66777766664
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEe-ecCCCCCCccceEEEec
Q 005093 115 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAP 193 (715)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~~~~~~~~~~sp 193 (715)
+. ...|.+||+.+++... +........+..++|+|
T Consensus 189 ~~--------------------------------------------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~ 224 (437)
T 3gre_A 189 TN--------------------------------------------LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE 224 (437)
T ss_dssp ET--------------------------------------------TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT
T ss_pred eC--------------------------------------------CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC
Confidence 32 2679999998887644 32111334678899999
Q ss_pred CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecC-CCCccccce----e
Q 005093 194 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT-ESISSAFFP----R 267 (715)
Q Consensus 194 dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt-~~~~~~~~~----~ 267 (715)
||+. |+..+ .+..|.++|+ ..++. ..+. .....+... .
T Consensus 225 ~~~~----l~s~~---------------~dg~i~iwd~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 225 ECCV----LILGT---------------TRGIIDIWDI-----------------RFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp TSCE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred CCCE----EEEEc---------------CCCeEEEEEc-----------------CCccEEEEEecCCCCceEEEEeccc
Confidence 9986 66544 2236888887 44443 3332 334445555 6
Q ss_pred EcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCC------CCccc-cccCCCCCCc
Q 005093 268 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEG------DCFPG-LYSSSILSNP 339 (715)
Q Consensus 268 ~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~------~~~~g-~~~~~~~~~~ 339 (715)
|+|||+.|+-.+.+ ..|.++|+.+++... +......+ .......+ ..+.+ .+...+..++
T Consensus 269 ~s~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 269 YGKNSVIVVGGSSK-----------TFLTIWNFVKGHCQYAFINSDEQP-SMEHFLPIEKGLEELNFCGIRSLNALSTIS 336 (437)
T ss_dssp TCTTEEEEEEESTT-----------EEEEEEETTTTEEEEEEESSSSCC-CGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred cCCCccEEEEEcCC-----------CcEEEEEcCCCcEEEEEEcCCCCC-ccceecccccccccceecccccCCceEEEE
Confidence 66788777655443 248888887654311 11000000 00000000 00111 1222456778
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 005093 340 WLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 372 (715)
Q Consensus 340 ~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 372 (715)
|+ +++ ++++...++ .|..+|+.+++....
T Consensus 337 ~~-~~~-~l~s~~~d~--~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 337 VS-NDK-ILLTDEATS--SIVMFSLNELSSSKA 365 (437)
T ss_dssp EE-TTE-EEEEEGGGT--EEEEEETTCGGGCEE
T ss_pred EC-Cce-EEEecCCCC--eEEEEECCCcccceE
Confidence 88 665 555555444 677778888775443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-05 Score=86.30 Aligned_cols=157 Identities=10% Similarity=0.018 Sum_probs=86.7
Q ss_pred EEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-CceecCCCCccccceeE
Q 005093 190 VWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRF 268 (715)
Q Consensus 190 ~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~ 268 (715)
.++|+++. ++... .+..|.++|+ .++ ....+......+....|
T Consensus 275 ~~~~~~~~----l~~~~---------------~d~~i~vwd~-----------------~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 275 TVSGHGNI----VVSGS---------------YDNTLIVWDV-----------------AQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp EEEEETTE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCEEEEEE
T ss_pred EEcCCCCE----EEEEe---------------CCCeEEEEEC-----------------CCCcEEEEecCCCCCEEEEEE
Confidence 45788876 55544 2346888887 444 34455556677889999
Q ss_pred cCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC-------------------CcccceeeeeeceecCCCCC-cc
Q 005093 269 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-------------------SSLEKIVDVIPVVQCAEGDC-FP 328 (715)
Q Consensus 269 spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-------------------~lt~~~~~~~~~~~~~~~~~-~~ 328 (715)
+|||+.|+..+.+. .|.++|+.+++.. .++...+..+.+|+...... +.
T Consensus 319 ~~~~~~l~sg~~dg-----------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 387 (464)
T 3v7d_B 319 DHERKRCISASMDT-----------TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS 387 (464)
T ss_dssp ETTTTEEEEEETTS-----------CEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cCCCCEEEEEeCCC-----------cEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeee
Confidence 99999888666553 2555565543321 11222223344444333221 11
Q ss_pred ccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeC
Q 005093 329 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 397 (715)
Q Consensus 329 g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~ 397 (715)
...........|+++++.++. .. + ..+..+|+.+|+...............++.+++.+++..+.
T Consensus 388 ~~~~~~~~~~~~~~~~~~l~~-~~-d--g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 388 YHHTNLSAITTFYVSDNILVS-GS-E--NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp EECTTCCCEEEEEECSSEEEE-EE-T--TEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEE
T ss_pred ecCCCCccEEEEEeCCCEEEE-ec-C--CeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEe
Confidence 111122344578899885544 33 3 36777899899877632222212334455567777665544
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-07 Score=82.47 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=55.3
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++| +. ...|... |+ ++|.|+++|+|| +|.+... .. . .+++.+.+..+++. .+.+
T Consensus 22 ~~~vv~~H-~~----~~~~~~~---l~-~~~~v~~~d~~G---~G~s~~~---~~--~--~~~~~~~~~~~~~~--~~~~ 80 (131)
T 2dst_A 22 GPPVLLVA-EE----ASRWPEA---LP-EGYAFYLLDLPG---YGRTEGP---RM--A--PEELAHFVAGFAVM--MNLG 80 (131)
T ss_dssp SSEEEEES-SS----GGGCCSC---CC-TTSEEEEECCTT---STTCCCC---CC--C--HHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEEc-CC----HHHHHHH---Hh-CCcEEEEECCCC---CCCCCCC---CC--C--HHHHHHHHHHHHHH--cCCC
Confidence 47899999 22 2223222 54 459999999999 5544211 11 1 55555555555554 2456
Q ss_pred eEEEEEeChhHHHHHHHHhhCCC
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPD 583 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~ 583 (715)
++.++|||+||.+++.++.++|.
T Consensus 81 ~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 81 APWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp SCEEEECGGGGGGHHHHHHTTCC
T ss_pred ccEEEEEChHHHHHHHHHhcCCc
Confidence 89999999999999999999885
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.2e-06 Score=88.43 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=53.0
Q ss_pred ceEEEEEEEeecCCCCc-cccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCcccc
Q 005093 14 RKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVH 90 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 90 (715)
....|.++|+.+.+... ..+. .+.+.+...+|||||++|+.....+ ...+| .+++...+......+
T Consensus 62 ~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~v- 130 (368)
T 3mmy_A 62 WANDVRCWEVQDSGQTIPKAQQ-----MHTGPVLDVCWSDDGSKVFTASCDK-----TAKMWDLSSNQAIQIAQHDAPV- 130 (368)
T ss_dssp TTSEEEEEEECTTSCEEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECSSCE-
T ss_pred CCCcEEEEEcCCCCceeEEEec-----cccCCEEEEEECcCCCEEEEEcCCC-----cEEEEEcCCCCceeeccccCce-
Confidence 44566777777644322 2222 2236789999999999998765543 34555 455544444333333
Q ss_pred ccccCCCcccceee--cCCCCeEEEEeecC
Q 005093 91 GSVYADGWFEGISW--NSDETLIAYVAEEP 118 (715)
Q Consensus 91 ~~~~~~~~~~~~~w--SpDg~~la~~~~~~ 118 (715)
..+.| +|+|+.|+..+.+.
T Consensus 131 ---------~~~~~~~~~~~~~l~~~~~dg 151 (368)
T 3mmy_A 131 ---------KTIHWIKAPNYSCVMTGSWDK 151 (368)
T ss_dssp ---------EEEEEEECSSCEEEEEEETTS
T ss_pred ---------EEEEEEeCCCCCEEEEccCCC
Confidence 78999 99998888766543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-05 Score=85.86 Aligned_cols=207 Identities=9% Similarity=0.066 Sum_probs=116.6
Q ss_pred cccceEEeeCC-CCceEEEEecCCCCCCeEEEEe--cC---Cc-c--EEEEecCccccccccCCCcccceeecCCCCeEE
Q 005093 42 MTGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQ---SQ-L--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIA 112 (715)
Q Consensus 42 ~~~~~~~~~Sp-dg~~la~~~~~~~~~~~~~~~~--~~---~~-~--~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la 112 (715)
.+.+...+||| ||++||.....+ ...+| .. +. . ......... +..+.|+||++.|+
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~ 127 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQG-----VIKIWNLKEIIVGEVYSSSLTYDCSST----------VTQITMIPNFDAFA 127 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTS-----EEEEEEHHHHHTTCCCSCSEEEECSSC----------EEEEEECTTSSEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCc-----eEEEeECcccccCcccceeeeccCCCC----------EEEEEEeCCCCEEE
Confidence 36789999999 999998776542 34455 22 22 1 111122222 37999999999887
Q ss_pred EEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc---CCceEeecC---------C
Q 005093 113 YVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ---SGEVQAVKG---------I 180 (715)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~g~~~~l~~---------~ 180 (715)
..+.+ ..|.+||++ +++...... .
T Consensus 128 s~s~d--------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~ 163 (437)
T 3gre_A 128 VSSKD--------------------------------------------GQIIVLKVNHYQQESEVKFLNCECIRKINLK 163 (437)
T ss_dssp EEETT--------------------------------------------SEEEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred EEeCC--------------------------------------------CEEEEEEeccccCCceeeccccceeEEEEcc
Confidence 75432 557888874 443322200 0
Q ss_pred C--CCCccceE--EEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-cee
Q 005093 181 P--KSLSVGQV--VWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN 255 (715)
Q Consensus 181 ~--~~~~~~~~--~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 255 (715)
+ .......+ .++||++. |+... .+..|.++|+ .+++ ...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~----l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~ 207 (437)
T 3gre_A 164 NFGKNEYAVRMRAFVNEEKSL----LVALT---------------NLSRVIIFDI-----------------RTLERLQI 207 (437)
T ss_dssp GGSSCCCEEEEEEEECSSCEE----EEEEE---------------TTSEEEEEET-----------------TTCCEEEE
T ss_pred CcccccCceEEEEEEcCCCCE----EEEEe---------------CCCeEEEEeC-----------------CCCeeeEE
Confidence 0 11112222 25667765 55443 3347888887 4444 344
Q ss_pred cCC--CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cc-cceeeeeeceecCCCCCccccc
Q 005093 256 LTE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SL-EKIVDVIPVVQCAEGDCFPGLY 331 (715)
Q Consensus 256 lt~--~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt-~~~~~~~~~~~~~~~~~~~g~~ 331 (715)
+.. ....+...+|+|||+.|+..+.+. .|.++|+.++.... +. .....+..+
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~v~~~------------- 263 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRG-----------IIDIWDIRFNVLIRSWSFGDHAPITHV------------- 263 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTS-----------CEEEEETTTTEEEEEEBCTTCEEEEEE-------------
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCC-----------eEEEEEcCCccEEEEEecCCCCceEEE-------------
Confidence 444 355788899999999888776553 48888887644311 11 111111100
Q ss_pred cCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 332 SSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 332 ~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
...+.|++|+. ++++...+ ..|..+|+.+++.....
T Consensus 264 ---~~~~~~s~~~~-~l~s~~~d--g~i~iwd~~~~~~~~~~ 299 (437)
T 3gre_A 264 ---EVCQFYGKNSV-IVVGGSSK--TFLTIWNFVKGHCQYAF 299 (437)
T ss_dssp ---EECTTTCTTEE-EEEEESTT--EEEEEEETTTTEEEEEE
T ss_pred ---EeccccCCCcc-EEEEEcCC--CcEEEEEcCCCcEEEEE
Confidence 01225677876 44444433 46777788888765443
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.7e-07 Score=94.46 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=67.6
Q ss_pred CCCcEEEEEcCCCCCC------CCccch----HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCC---------CCCC--
Q 005093 479 SCDPLIVVLHGGPHSV------SLSSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP---------GKVG-- 537 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~------~~~~~~----~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~---------~~~~-- 537 (715)
+..|.||++||..... ....|. .+++.|+++||.|+++|++| +|.+...... ...+
T Consensus 50 ~~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G---~G~S~~~~~~l~~~i~~g~g~sg~~ 126 (431)
T 2hih_A 50 KNKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSA---LASNHERAVELYYYLKGGRVDYGAA 126 (431)
T ss_dssp SCSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCS---SSCHHHHHHHHHHHHHCEEEECCHH
T ss_pred CCCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCC---CCCCccchHHhhhhhhhcccccccc
Confidence 3456699999954421 123443 47888999999999999999 5544311000 0000
Q ss_pred -------ccchhhHHHHHHHHHHcCCCC-CceEEEEEeChhHHHHHHHHhh--------------------------CCC
Q 005093 538 -------SQDVNDVLTAIDHVIDMGLAN-PSKVTVVGGSHGGFLTTHLIGQ--------------------------APD 583 (715)
Q Consensus 538 -------~~~~~d~~~~i~~l~~~~~~d-~~~i~l~G~S~GG~~a~~~a~~--------------------------~p~ 583 (715)
....+|+.++++ . .. ..++.|+||||||.++..++.. +|+
T Consensus 127 ~~~~~~~~~~a~dl~~ll~----~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~ 200 (431)
T 2hih_A 127 HSEKYGHERYGKTYEGVLK----D--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDN 200 (431)
T ss_dssp HHHHHTCCSEEEEECCSCT----T--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCS
T ss_pred ccccCCHHHHHHHHHHHHH----H--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCccc
Confidence 000011111111 1 12 3789999999999999998765 688
Q ss_pred ceeEEEecCCcc
Q 005093 584 KFVAAAARNPLC 595 (715)
Q Consensus 584 ~~~~~v~~~~~~ 595 (715)
+++++|++++..
T Consensus 201 ~V~slv~i~tP~ 212 (431)
T 2hih_A 201 MVTSITTIATPH 212 (431)
T ss_dssp CEEEEEEESCCT
T ss_pred ceeEEEEECCCC
Confidence 999999988754
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=94.47 Aligned_cols=302 Identities=10% Similarity=-0.026 Sum_probs=139.8
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCC------CceEEEEecCCCCCCeEEEEecCCcc-EEEEecC
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPS------GSKLLVVRNPENESPIQFELWSQSQL-EKEFHVP 86 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spd------g~~la~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 86 (715)
....|.+++++++..... +. ..+....+.+...+|||+ ++.||-.... +.-.+|.+..+... .......
T Consensus 181 ~D~tI~iWd~~~~~~~~~-~~-~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D--gtvrlWd~~~~~~~~~~~~~~~ 256 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCV-KV-QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE--GTINFLEIIDNATDVHVFKMCE 256 (524)
T ss_dssp -CEEEEEEEEETTTCCEE-EE-EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT--SCEEEEECCCCSSSSSEEECCC
T ss_pred CCceEEEEEccCCCCCce-EE-EEEEecCCcEEEEEECCCCCCCCCCceEEEEecC--CeEEEEEcCCCccccccceeec
Confidence 455666666766542111 00 011222366888999997 5677766554 33344444322111 0000000
Q ss_pred ccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCC-CCcCCCCCCCCC--cccCCcC-cccC-CccC
Q 005093 87 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS-SDKDCNSWKGQG--DWEEDWG-ETYA-GKRQ 161 (715)
Q Consensus 87 ~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~g-~~~~-~~~~ 161 (715)
............+..+.|+|++ .|+..+.+... ..|......... ........+..+ .|.++ | ..++ ....
T Consensus 257 ~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV--~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~-g~~~laS~S~D 332 (524)
T 2j04_B 257 KPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFV--AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDF-EDTVVSTVAVD 332 (524)
T ss_dssp SCSEEECCTTTCEEEEEESSSS-EEEEEETTSEE--EEEETTBCSSCSEEEECSSSCEEEEEEECCTT-SCCEEEEEETT
T ss_pred CceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEE--EEEECCCCCCceEEeecccccEEEEEEEcCCC-CCeEEEEeccC
Confidence 0000000001234789999975 56665544322 223222111100 011122233333 34444 3 2222 2335
Q ss_pred ceEEEEEccCCceEe-ecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 162 PSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~-l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
..|.+||+.+++... +.+......+..++|+||++. ++..+ ....|.++|+
T Consensus 333 ~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~----l~s~~---------------~d~tv~lwd~--------- 384 (524)
T 2j04_B 333 GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS----YIYSD---------------GASSLRAVPS--------- 384 (524)
T ss_dssp SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE----EEEEC---------------SSSEEEEEET---------
T ss_pred CeEEEEECCCCCcccccccccccCcccceEeCCCcCe----EEEeC---------------CCCcEEEEEC---------
Confidence 789999998765322 210111113567899999987 66554 1225777786
Q ss_pred hhhhccCCCCCC-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 241 LELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 241 ~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
..+. ...+..+...+..++|||||+.|+-.+.+. .+.++|+..+-........ ...
T Consensus 385 --------~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg-----------tv~lwd~~~~~~~~~~~~~-~~~--- 441 (524)
T 2j04_B 385 --------RAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG-----------SLIITNAARRLLHGIKNSS-ATQ--- 441 (524)
T ss_dssp --------TCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT-----------EEECCBSCSSTTTCC-------C---
T ss_pred --------cccccceeeecCCCceEEEEeCCCCCeEEEEECCC-----------EEEEEechHhhccccccCc-cce---
Confidence 4433 456777777889999999999887666542 4667776442111110000 000
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCC
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD 389 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~ 389 (715)
. ...+..++|+|+|+.+-+ . + ...++.++..+.....+......+....|+|++.
T Consensus 442 -----~------~~~v~~v~~sp~g~~~~~--~-~-~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~ 496 (524)
T 2j04_B 442 -----K------SLRLWKWDYSIKDDKYRI--D-S-SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSA 496 (524)
T ss_dssp -----C------CCEEEECBCCSSSCEEEE--C-C-CCCCCC-------------CCCSCCCEEECCSTT
T ss_pred -----e------eeEEEEeccCCCCCeEEc--c-C-CceecccccCCcceeeecCCCceEEEEECCCCCC
Confidence 0 001235678999984422 1 1 1223333322333444444444455568999864
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-05 Score=81.20 Aligned_cols=217 Identities=10% Similarity=0.036 Sum_probs=121.9
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
......++|||| +| |+.+. ....++.++ .+++..+...+..... . ......+.+ ++++|+.. ..
T Consensus 84 ~~p~~i~~~~~g-~l-yv~~~--~~~~v~~iD~~t~~~~~~i~~g~~~~-~---~~~p~~i~~--~~~~lyv~-~~---- 148 (328)
T 3dsm_A 84 TSPRYIHFLSDE-KA-YVTQI--WDYRIFIINPKTYEITGYIECPDMDM-E---SGSTEQMVQ--YGKYVYVN-CW---- 148 (328)
T ss_dssp SSEEEEEEEETT-EE-EEEEB--SCSEEEEEETTTTEEEEEEECTTCCT-T---TCBCCCEEE--ETTEEEEE-EC----
T ss_pred CCCcEEEEeCCC-eE-EEEEC--CCCeEEEEECCCCeEEEEEEcCCccc-c---CCCcceEEE--ECCEEEEE-cC----
Confidence 446778889998 54 55552 123677777 5666555554433000 0 001146666 56666554 21
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccE
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~ 201 (715)
+ ....|.++|+++++.... .+.......+.++|||+
T Consensus 149 -------------------------------~------~~~~v~viD~~t~~~~~~--i~~g~~p~~i~~~~dG~----- 184 (328)
T 3dsm_A 149 -------------------------------S------YQNRILKIDTETDKVVDE--LTIGIQPTSLVMDKYNK----- 184 (328)
T ss_dssp -------------------------------T------TCCEEEEEETTTTEEEEE--EECSSCBCCCEECTTSE-----
T ss_pred -------------------------------C------CCCEEEEEECCCCeEEEE--EEcCCCccceEEcCCCC-----
Confidence 1 126799999999886543 22233456788999997
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-ecCCC-CccccceeEcCCCCeEEEEe
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-ISSAFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~-~~~~~~~~~spdg~~l~~~~ 279 (715)
+++........ ..+. .....|+++|. ++++.. .+.-+ ......++|+|||++|++..
T Consensus 185 l~v~~~~~~~~-~~~~---~~~~~v~~id~-----------------~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 185 MWTITDGGYEG-SPYG---YEAPSLYRIDA-----------------ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEEEBCCBCTT-CSSC---BCCCEEEEEET-----------------TTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred EEEEECCCccC-Cccc---cCCceEEEEEC-----------------CCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 56655321100 0000 01247999996 556544 33222 22567899999999886653
Q ss_pred cCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee--CCee
Q 005093 280 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQ 357 (715)
Q Consensus 280 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~--~~~~ 357 (715)
. .|+++|..+++..... . .. . .. ..+..++++|++..||++... ....
T Consensus 244 ~-------------~v~~~d~~t~~~~~~~--~---~~---~--~~-------~~p~gi~vdp~~g~lyva~~~~y~~~~ 293 (328)
T 3dsm_A 244 N-------------DIWRMPVEADRVPVRP--F---LE---F--RD-------TKYYGLTVNPNNGEVYVADAIDYQQQG 293 (328)
T ss_dssp S-------------SEEEEETTCSSCCSSC--S---BC---C--CS-------SCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred c-------------EEEEEECCCCceeeee--e---ec---C--CC-------CceEEEEEcCCCCeEEEEcccccccCC
Confidence 2 3899998876642110 0 00 0 00 123456788866667776421 2456
Q ss_pred EEEEEECCCCcEE
Q 005093 358 VIISVNVSSGELL 370 (715)
Q Consensus 358 ~l~~~d~~tg~~~ 370 (715)
.|+.+|++ |+..
T Consensus 294 ~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 294 IVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEEECTT-CCEE
T ss_pred EEEEECCC-CCEE
Confidence 89999987 5533
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.44 E-value=6.1e-06 Score=84.21 Aligned_cols=144 Identities=8% Similarity=0.058 Sum_probs=85.2
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|+++|+++++.+.+. ......+..+.|+|||+ +++....... ....|+++|.
T Consensus 66 ~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~dg~-----l~v~~~~~~~----------~~~~i~~~d~---------- 119 (333)
T 2dg1_A 66 GNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGR-----LFVCYLGDFK----------STGGIFAATE---------- 119 (333)
T ss_dssp CEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSC-----EEEEECTTSS----------SCCEEEEECT----------
T ss_pred CEEEEEeCCCCcEEEEe-eCCCCCcceEEECCCCc-----EEEEeCCCCC----------CCceEEEEeC----------
Confidence 57999999999877662 12334567889999997 4444321100 1136999996
Q ss_pred hhhccCCCCCCceec-CC--CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeec
Q 005093 242 ELKESSSEDLPVVNL-TE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 318 (715)
Q Consensus 242 ~~~~~~~~~~~~~~l-t~--~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~ 318 (715)
+++..+.+ .. .......+.++|||+ +++...... .......||+++..+++...+....
T Consensus 120 -------~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~------ 181 (333)
T 2dg1_A 120 -------NGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGY----STNPLGGVYYVSPDFRTVTPIIQNI------ 181 (333)
T ss_dssp -------TSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCB----TTBCCEEEEEECTTSCCEEEEEEEE------
T ss_pred -------CCCEEEEEEccCccCCcccceEECCCCC-EEEEecccc----ccCCCceEEEEeCCCCEEEEeecCC------
Confidence 66665533 21 223466789999996 555543210 0012346999987654433221110
Q ss_pred eecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 005093 319 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 365 (715)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~ 365 (715)
.....++|++||+.+++..... ..|+++|++
T Consensus 182 --------------~~~~~i~~~~dg~~l~v~~~~~--~~i~~~d~~ 212 (333)
T 2dg1_A 182 --------------SVANGIALSTDEKVLWVTETTA--NRLHRIALE 212 (333)
T ss_dssp --------------SSEEEEEECTTSSEEEEEEGGG--TEEEEEEEC
T ss_pred --------------CcccceEECCCCCEEEEEeCCC--CeEEEEEec
Confidence 0123567999998787765433 478888875
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.44 E-value=6.2e-06 Score=86.48 Aligned_cols=86 Identities=6% Similarity=-0.014 Sum_probs=48.1
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceEEeeCC--------CCceEEEEecCCCCCCeEEEEecCCccEEEEecCcc
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP--------SGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQT 88 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp--------dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (715)
.+.++|+.++.....++ ...+..+.+.+...+||| ||+.||-.+.+ +.-.+|.+..++....+......
T Consensus 112 ~v~lw~~~~~~~~~~~~-~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D--~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 112 TVRLIITKNETIITQHV-LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD--CTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp CEEEEEEETTEEEEEEE-ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT--SEEEEEEEETTEEEEEEEECSSC
T ss_pred cEEEEECCCCccceeee-ecccCCCCCceEEEEEccccccccCCCCCEEEEEECC--CeEEEEECCCCceeeeecCCCCC
Confidence 34555565543211111 123444557799999998 99999877654 22233333233333344333333
Q ss_pred ccccccCCCcccceeecCCCCeEEEEe
Q 005093 89 VHGSVYADGWFEGISWNSDETLIAYVA 115 (715)
Q Consensus 89 ~~~~~~~~~~~~~~~wSpDg~~la~~~ 115 (715)
+ ..+.|+|++..++..+
T Consensus 189 v----------~~v~~~p~~~~~l~~~ 205 (393)
T 4gq1_A 189 G----------ISVQFRPSNPNQLIVG 205 (393)
T ss_dssp E----------EEEEEETTEEEEEEEE
T ss_pred c----------EEEEECCCCCceEEec
Confidence 3 6899999997655543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.7e-06 Score=89.32 Aligned_cols=160 Identities=6% Similarity=-0.055 Sum_probs=91.7
Q ss_pred ceEEEEEccCCceE------------eecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEE
Q 005093 162 PSLFVININSGEVQ------------AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 229 (715)
Q Consensus 162 ~~l~~~~~~~g~~~------------~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~ 229 (715)
..|.+||+.+++.. .+ ......+..++|+|++ . |+..+ .+..|.++
T Consensus 235 gtvrlWd~~~~~~~~~~~~~~~~p~~~l--~~h~~~v~sv~~s~~~-~----lasgs---------------~DgtV~lW 292 (524)
T 2j04_B 235 GTINFLEIIDNATDVHVFKMCEKPSLTL--SLADSLITTFDFLSPT-T----VVCGF---------------KNGFVAEF 292 (524)
T ss_dssp SCEEEEECCCCSSSSSEEECCCSCSEEE--CCTTTCEEEEEESSSS-E----EEEEE---------------TTSEEEEE
T ss_pred CeEEEEEcCCCccccccceeecCceEEE--EcCCCCEEEEEecCCC-e----EEEEe---------------CCCEEEEE
Confidence 45788888765321 22 1223457788999864 4 55443 23468888
Q ss_pred ecccccchhhhhhhhccCCCCCC--ceecCCCCccccce--eEcCCC-CeEEEEecCCCCCCCCccccceeEeeecCCCC
Q 005093 230 RVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFP--RFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 304 (715)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~~--~~spdg-~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~ 304 (715)
|+ .++. ...+..+...+..+ .|+|+| +.|+-.+.+. .+.++|+.+++
T Consensus 293 D~-----------------~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~-----------tvklWD~~~~~ 344 (524)
T 2j04_B 293 DL-----------------TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG-----------YFYIFNPKDIA 344 (524)
T ss_dssp ET-----------------TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS-----------EEEEECGGGHH
T ss_pred EC-----------------CCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC-----------eEEEEECCCCC
Confidence 87 4332 23355556667777 679998 6666555442 47888876643
Q ss_pred CCCcccceeeeeeceecCCCCCcccccc-CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE-EEecCCCCCceeE
Q 005093 305 NFSSLEKIVDVIPVVQCAEGDCFPGLYS-SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWS 382 (715)
Q Consensus 305 ~~~lt~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~-~~l~~~~~~~~~~ 382 (715)
...... ++.. ..+..++|+|+++.+ +++...+ .+..+|+.++.. ..+......+...
T Consensus 345 ~~~~~~------------------~~~~~~~v~~v~fsp~~~~l-~s~~~d~--tv~lwd~~~~~~~~~l~gH~~~V~sv 403 (524)
T 2j04_B 345 TTKTTV------------------SRFRGSNLVPVVYCPQIYSY-IYSDGAS--SLRAVPSRAAFAVHPLVSRETTITAI 403 (524)
T ss_dssp HHCEEE------------------EECSCCSCCCEEEETTTTEE-EEECSSS--EEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred cccccc------------------cccccCcccceEeCCCcCeE-EEeCCCC--cEEEEECcccccceeeecCCCceEEE
Confidence 211000 0000 124567899999864 4444333 456668877764 4444444445556
Q ss_pred EEeecCCEEE
Q 005093 383 LLTLDGDNII 392 (715)
Q Consensus 383 ~~s~~~~~l~ 392 (715)
.|++++..|+
T Consensus 404 a~Sp~g~~l~ 413 (524)
T 2j04_B 404 GVSRLHPMVL 413 (524)
T ss_dssp ECCSSCCBCE
T ss_pred EeCCCCCeEE
Confidence 7788777554
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=90.22 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=65.6
Q ss_pred CCcEEEEEcCCCCCCCC-----ccch----HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHH
Q 005093 480 CDPLIVVLHGGPHSVSL-----SSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDH 550 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~-----~~~~----~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~ 550 (715)
..+.||++||....... ..|. .+++.|+++||.|+++|++| +|.+... ..++...++.
T Consensus 5 ~~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g---~G~s~~~----------a~~l~~~i~~ 71 (387)
T 2dsn_A 5 NDAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGP---LSSNWDR----------ACEAYAQLVG 71 (387)
T ss_dssp CCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCS---SBCHHHH----------HHHHHHHHHC
T ss_pred CCCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCC---CCCcccc----------HHHHHHHHHh
Confidence 34558999995443211 2243 34588999999999999998 5543211 1222222221
Q ss_pred --------HHHc---------------CCCCCceEEEEEeChhHHHHHHHHhh-------------------CC------
Q 005093 551 --------VIDM---------------GLANPSKVTVVGGSHGGFLTTHLIGQ-------------------AP------ 582 (715)
Q Consensus 551 --------l~~~---------------~~~d~~~i~l~G~S~GG~~a~~~a~~-------------------~p------ 582 (715)
+.+. .....+++.|+||||||.++..++.+ +|
T Consensus 72 ~~vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~ 151 (387)
T 2dsn_A 72 GTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGH 151 (387)
T ss_dssp EEEECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCC
T ss_pred hhhhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccc
Confidence 1100 00235789999999999999998872 35
Q ss_pred CceeEEEecCCcc
Q 005093 583 DKFVAAAARNPLC 595 (715)
Q Consensus 583 ~~~~~~v~~~~~~ 595 (715)
++++.+|++++..
T Consensus 152 ~~V~sLV~i~tP~ 164 (387)
T 2dsn_A 152 HFVLSVTTIATPH 164 (387)
T ss_dssp CCEEEEEEESCCT
T ss_pred cceeEEEEECCCC
Confidence 6899999888754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.9e-05 Score=78.61 Aligned_cols=143 Identities=10% Similarity=-0.011 Sum_probs=89.0
Q ss_pred ccceEEeeCC--CCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 43 TGASAVVPSP--SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 43 ~~~~~~~~Sp--dg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
+.+...+|+| +|++++.....+ ...+| ..++...+...... ..+..+.|+|||+.|+..+.
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~~~~--------~~i~~~~~~pdg~~lasg~~-- 190 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRG-----TIGFQSYEDDSQYIVHSAKSD--------VEYSSGVLHKDSLLLALYSP-- 190 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTC-----CEEEEESSSSCEEEEECCCSS--------CCCCEEEECTTSCEEEEECT--
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCC-----cEEEEECCCCcEEEEEecCCC--------CceEEEEECCCCCEEEEEcC--
Confidence 4578899999 999988766543 23445 44444333322111 12378999999998877432
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE--eecCCCCCCccceEEEecCCC
Q 005093 119 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--~l~~~~~~~~~~~~~~spdg~ 196 (715)
...|.+||+.+++.. .+. ......+..++|+|||+
T Consensus 191 ------------------------------------------dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~fs~~g~ 227 (343)
T 3lrv_A 191 ------------------------------------------DGILDVYNLSSPDQASSRFP-VDEEAKIKEVKFADNGY 227 (343)
T ss_dssp ------------------------------------------TSCEEEEESSCTTSCCEECC-CCTTSCEEEEEECTTSS
T ss_pred ------------------------------------------CCEEEEEECCCCCCCccEEe-ccCCCCEEEEEEeCCCC
Confidence 256999999988754 442 11345788999999999
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCC---CCcccc--ceeEcC
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE---SISSAF--FPRFSP 270 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~---~~~~~~--~~~~sp 270 (715)
. |+..+. ..|.++|+ ..+.. ..+.. +..... ..+|+|
T Consensus 228 ~----l~s~~~----------------~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 228 W----MVVECD----------------QTVVCFDL-----------------RKDVGTLAYPTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp E----EEEEES----------------SBEEEEET-----------------TSSTTCBSSCCCBC-----CCEEEEECT
T ss_pred E----EEEEeC----------------CeEEEEEc-----------------CCCCcceeecccccccccccceEEEECC
Confidence 7 666541 15778887 33332 22222 122233 499999
Q ss_pred CCCeEEEEec
Q 005093 271 DGKFLVFLSA 280 (715)
Q Consensus 271 dg~~l~~~~~ 280 (715)
+|++|+..+.
T Consensus 271 ~g~~l~~~s~ 280 (343)
T 3lrv_A 271 SGKNMIAYSN 280 (343)
T ss_dssp TSSEEEEEET
T ss_pred CCCEEEEecC
Confidence 9999987665
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=9.8e-06 Score=82.51 Aligned_cols=136 Identities=15% Similarity=0.096 Sum_probs=83.7
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|+++|+++++.+.+. . ...+..+.|+|||+. ++... ..|+++|+
T Consensus 71 ~~i~~~d~~~~~~~~~~--~-~~~v~~i~~~~dg~l----~v~~~-----------------~gl~~~d~---------- 116 (326)
T 2ghs_A 71 RELHELHLASGRKTVHA--L-PFMGSALAKISDSKQ----LIASD-----------------DGLFLRDT---------- 116 (326)
T ss_dssp TEEEEEETTTTEEEEEE--C-SSCEEEEEEEETTEE----EEEET-----------------TEEEEEET----------
T ss_pred CEEEEEECCCCcEEEEE--C-CCcceEEEEeCCCeE----EEEEC-----------------CCEEEEEC----------
Confidence 67999999999877662 2 234667889999985 44321 14889996
Q ss_pred hhhccCCCCCCceecCCCC-----ccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeee
Q 005093 242 ELKESSSEDLPVVNLTESI-----SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 316 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~~-----~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~ 316 (715)
.+++.+.+.... .....+.++|||+ +++...... .......||+++ +++.+.+....
T Consensus 117 -------~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~----~~~~~~~l~~~~--~g~~~~~~~~~---- 178 (326)
T 2ghs_A 117 -------ATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRK----AETGAGSIYHVA--KGKVTKLFADI---- 178 (326)
T ss_dssp -------TTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETT----CCTTCEEEEEEE--TTEEEEEEEEE----
T ss_pred -------CCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCc----CCCCceEEEEEe--CCcEEEeeCCC----
Confidence 667766554321 2356789999998 555543211 001234699998 33322221100
Q ss_pred eceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC--CC
Q 005093 317 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS--SG 367 (715)
Q Consensus 317 ~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~--tg 367 (715)
.....++|++||+.+++.... ...|+.++++ +|
T Consensus 179 ----------------~~~~~i~~s~dg~~lyv~~~~--~~~I~~~d~~~~~G 213 (326)
T 2ghs_A 179 ----------------SIPNSICFSPDGTTGYFVDTK--VNRLMRVPLDARTG 213 (326)
T ss_dssp ----------------SSEEEEEECTTSCEEEEEETT--TCEEEEEEBCTTTC
T ss_pred ----------------cccCCeEEcCCCCEEEEEECC--CCEEEEEEcccccC
Confidence 012356799999988876433 3578888875 66
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.39 E-value=3.8e-05 Score=78.70 Aligned_cols=121 Identities=18% Similarity=0.102 Sum_probs=72.7
Q ss_pred EeeCCCCceEEEEecCC--CCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 48 VVPSPSGSKLLVVRNPE--NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 48 ~~~Spdg~~la~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
....|||++++ +.+.. .....++.++ .+++....+...... .+.+||||++|+.......
T Consensus 38 ~~~~pd~~~vy-V~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-----------~va~spDG~~lyVan~~~~----- 100 (386)
T 3sjl_D 38 EAPAPDARRVY-VNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-----------NPVVADDGSFIAHASTVFS----- 100 (386)
T ss_dssp CCCCCCTTEEE-EEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-----------EEEECTTSSCEEEEEEEEE-----
T ss_pred eccCCCCCEEE-EEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-----------cEEECCCCCEEEEEccccc-----
Confidence 35579999875 44432 1234788888 666666555543333 4999999999877542100
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCC------CCccceEEEecCCCCC
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK------SLSVGQVVWAPLNEGL 198 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~------~~~~~~~~~spdg~~~ 198 (715)
...+|+ ....|.++|.+++++..-..... ......+.+||||++
T Consensus 101 ------------------------r~~~G~-----~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~- 150 (386)
T 3sjl_D 101 ------------------------RIARGE-----RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT- 150 (386)
T ss_dssp ------------------------ETTEEE-----EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE-
T ss_pred ------------------------ccccCC-----CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCE-
Confidence 000111 23679999999988654210111 124667899999996
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEec
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 231 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 231 (715)
++. ++.. ....|.++|+
T Consensus 151 ---lyV-an~~------------~~~~VsVID~ 167 (386)
T 3sjl_D 151 ---LLF-YQFS------------PAPAVGVVDL 167 (386)
T ss_dssp ---EEE-EECS------------SSCEEEEEET
T ss_pred ---EEE-EEcC------------CCCeEEEEEC
Confidence 554 4321 1237999997
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00016 Score=74.67 Aligned_cols=219 Identities=13% Similarity=-0.016 Sum_probs=104.4
Q ss_pred CceEEEEEccCCceEeecCCC--CCCccceEEEecCCCCCccEEEEEeecCc-cceeeeeeee---cCCceEEEEecccc
Q 005093 161 QPSLFVININSGEVQAVKGIP--KSLSVGQVVWAPLNEGLHQYLVFVGWSSE-TRKLGIKYCY---NRPCALYAVRVSLY 234 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~--~~~~~~~~~~spdg~~~~~~i~~~~~~~~-~~~~g~~~~~---~~~~~i~~~~~~~~ 234 (715)
...|.++|.+|+++..--... ......++.|+||++. ++.+.|... ..+.|+.... ....+|.++|+
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~----mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~--- 235 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEV----LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL--- 235 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTE----EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET---
T ss_pred CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCE----EEEccCcCccccccccchhhhhhccCCEEEEEEC---
Confidence 478999999998876441011 1122346889999995 554433110 0111221100 12457999997
Q ss_pred cchhhhhhhhccCCCCCCc-eecCCC-Cc-cccce--eEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcc
Q 005093 235 KSEASELELKESSSEDLPV-VNLTES-IS-SAFFP--RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 309 (715)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~-~~lt~~-~~-~~~~~--~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt 309 (715)
.+++. ..+.-. .+ ..... +|+|||++++....-+.. .-...|+++..+.+...
T Consensus 236 --------------~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~-----~Lss~V~v~~~d~g~~~--- 293 (462)
T 2ece_A 236 --------------RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLK-----DLSSSIWLWFYEDGKWN--- 293 (462)
T ss_dssp --------------TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETT-----TCCEEEEEEEEETTEEE---
T ss_pred --------------CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeecc-----CCCceEEEEEecCCcee---
Confidence 44432 233322 21 23333 459999977666551100 01134665554432210
Q ss_pred cceeeeeeceecCCCCCcc---ccc---cCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC-CC--cEE-EecCC----
Q 005093 310 EKIVDVIPVVQCAEGDCFP---GLY---SSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS-SG--ELL-RITPA---- 375 (715)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~-tg--~~~-~l~~~---- 375 (715)
...++.+....-....+ ..+ ......+..|+||++||++....+ .|..+|+. .+ +.. .+..+
T Consensus 294 --~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d--~VavfdV~d~~~~~lv~~I~tGG~~~ 369 (462)
T 2ece_A 294 --AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG--EVRQYDISNPFKPVLTGKVKLGGIFH 369 (462)
T ss_dssp --EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTT--EEEEEECSSTTSCEEEEEEECBTTTT
T ss_pred --EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCC--EEEEEEecCCCCcEEEEEEEeCCeec
Confidence 00111110000000010 000 013467779999998877654444 55555653 22 222 23222
Q ss_pred -------C---CCceeEEEeecCCEEEEEEe-------C---CCCCCeEEEEeeccc
Q 005093 376 -------E---SNFSWSLLTLDGDNIIAVSS-------S---PVDVPQVKYGYFVDK 412 (715)
Q Consensus 376 -------~---~~~~~~~~s~~~~~l~~~~~-------~---~~~p~~l~~~~~~~~ 412 (715)
. +.-....+++||++|+++.+ . ......++.++.+..
T Consensus 370 ~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~ 426 (462)
T 2ece_A 370 RADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPS 426 (462)
T ss_dssp CBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTT
T ss_pred cccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCC
Confidence 0 00133578999999887762 1 133455666665543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=8.3e-06 Score=95.05 Aligned_cols=202 Identities=11% Similarity=0.055 Sum_probs=121.6
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC
Q 005093 100 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 179 (715)
Q Consensus 100 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~ 179 (715)
..++|||||+.||..+. ...|++|+..+++....
T Consensus 21 ~~lafspdg~~lAsgs~--------------------------------------------Dg~I~lw~~~~~~~~~~-- 54 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATV--------------------------------------------TGEVHIYGQQQVEVVIK-- 54 (902)
T ss_dssp EEEEEETTTTEEEEEET--------------------------------------------TSEEEEECSTTCEEEEE--
T ss_pred EEEEECCCCCEEEEEeC--------------------------------------------CCEEEEEeCCCcEEEEE--
Confidence 79999999999888532 25689999887766544
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCC
Q 005093 180 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE 258 (715)
Q Consensus 180 ~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~ 258 (715)
......+..++|+| |+. |+..+ .+..|.++|+ .+++. ..+.
T Consensus 55 ~~~~~~V~~l~fsp-g~~----L~S~s---------------~D~~v~lWd~-----------------~~~~~~~~~~- 96 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIY----LVVIN---------------AKDTVYVLSL-----------------YSQKVLTTVF- 96 (902)
T ss_dssp CSSCCCEEEEEEET-TTE----EEEEE---------------TTCEEEEEET-----------------TTCSEEEEEE-
T ss_pred cCCCCCEEEEEEcC-CCE----EEEEE---------------CcCeEEEEEC-----------------CCCcEEEEEc-
Confidence 33445688999999 775 66554 2236788887 44443 3333
Q ss_pred CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCC
Q 005093 259 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 338 (715)
Q Consensus 259 ~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 338 (715)
....+....|+|||++|+..+.+. .|.++|+.++..... .+..++... .... .+...+..+
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg-----------~V~lwd~~~~~~~~~-----~i~~~~~~~--~~~~-~h~~~V~sl 157 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNG-----------SMIVYDIDRDQLSSF-----KLDNLQKSS--FFPA-ARLSPIVSI 157 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTS-----------CEEEEETTTTEEEEE-----EECCHHHHH--TCSS-SCCCCCCEE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCC-----------cEEEEECCCCccccc-----eeccccccc--cccc-cCCCCeEEE
Confidence 445688899999999988766552 488888876542100 000000000 0000 122356778
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-------------------CCceeEEEeecCCEEEEEEeCCC
Q 005093 339 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-------------------SNFSWSLLTLDGDNIIAVSSSPV 399 (715)
Q Consensus 339 ~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-------------------~~~~~~~~s~~~~~l~~~~~~~~ 399 (715)
+|+|++..++++...++ .+ .+|+.+++........ ..+....|++++..|+....+
T Consensus 158 ~~sp~~~~~l~~g~~dg--~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D-- 232 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYV--TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED-- 232 (902)
T ss_dssp EEETTEEEEEEEECSSC--EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT--
T ss_pred EEccCCCCEEEEEeCCC--cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC--
Confidence 89997654555555444 45 7798888765543321 223445788888766544422
Q ss_pred CCCeEEEEeecc
Q 005093 400 DVPQVKYGYFVD 411 (715)
Q Consensus 400 ~p~~l~~~~~~~ 411 (715)
. .|.+.++.+
T Consensus 233 g--~i~lWd~~~ 242 (902)
T 2oaj_A 233 N--SLVFWDANS 242 (902)
T ss_dssp C--CEEEEETTT
T ss_pred C--eEEEEECCC
Confidence 1 255555543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-05 Score=80.79 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=103.0
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
.+....++++++.++++...+ ....+| ..++..........+ ..+.|++++ ++...+ ..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d----~~v~iWd~~~~~~~~~~~~~~~v----------~~v~~~~~~--~~~~~~-~~-- 120 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVK----EVVHIWDDVKKQDVSRIKVDAPV----------KDLFLSREF--IVVSYG-DV-- 120 (355)
T ss_dssp CCCEEEECTTSSEEEEECSST----TEEEEEETTTTEEEEEEECSSCE----------EEEEECSSE--EEEEET-TE--
T ss_pred CeEEEEEcCCCCEEEEEECCc----cEEEEEECCCCcEEEEEECCCce----------EEEEEcCCE--EEEEEc-CE--
Confidence 467788999999998775543 245666 344444433333222 678888875 333221 11
Q ss_pred CCCccCCCC-CCCCCCcCCCCCCCCCcccCCcCcccC-CccCceEEEEEccCCc-----------------eEeecCCCC
Q 005093 122 KPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYA-GKRQPSLFVININSGE-----------------VQAVKGIPK 182 (715)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~-----------------~~~l~~~~~ 182 (715)
...|..... +....... ..+-..+.+. .-.+. ......|.+||+.+++ ...+ ...
T Consensus 121 i~i~d~~~~~~~~~~~~~---~~~~~~~s~~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~--~~h 194 (355)
T 3vu4_A 121 ISVFKFGNPWKRITDDIR---FGGVCEFSNG-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI--KAH 194 (355)
T ss_dssp EEEEESSTTCCBSSCCEE---EEEEEEEETT-EEEEEESSCTTCEEEEECCC------------------CCEEE--CCC
T ss_pred EEEEECCCCceeeEEecc---CCceEEEEcc-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE--Ecc
Confidence 111221111 00000000 0000011110 00000 2234789999998875 4445 334
Q ss_pred CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCce-EEEEecccccchhhhhhhhccCCCCCC-ceecC-C-
Q 005093 183 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA-LYAVRVSLYKSEASELELKESSSEDLP-VVNLT-E- 258 (715)
Q Consensus 183 ~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt-~- 258 (715)
...+..++|||||+. |+..+ .+.. |.++|+ .+++ ...+. .
T Consensus 195 ~~~v~~~~~s~~g~~----l~s~s---------------~d~~~v~iwd~-----------------~~~~~~~~~~~g~ 238 (355)
T 3vu4_A 195 TNPIKMVRLNRKSDM----VATCS---------------QDGTIIRVFKT-----------------EDGVLVREFRRGL 238 (355)
T ss_dssp SSCEEEEEECTTSSE----EEEEE---------------TTCSEEEEEET-----------------TTCCEEEEEECTT
T ss_pred CCceEEEEECCCCCE----EEEEe---------------CCCCEEEEEEC-----------------CCCcEEEEEEcCC
Confidence 456788999999986 66554 2235 777786 4444 34454 2
Q ss_pred CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCC
Q 005093 259 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 304 (715)
Q Consensus 259 ~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~ 304 (715)
....+...+|||||++|+..+.+. .|.++|+..+.
T Consensus 239 h~~~v~~~~~s~~~~~l~s~s~d~-----------~v~iw~~~~~~ 273 (355)
T 3vu4_A 239 DRADVVDMKWSTDGSKLAVVSDKW-----------TLHVFEIFNDQ 273 (355)
T ss_dssp CCSCEEEEEECTTSCEEEEEETTC-----------EEEEEESSCCS
T ss_pred CCCcEEEEEECCCCCEEEEEECCC-----------EEEEEEccCCC
Confidence 566788999999999998777653 47778876543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.6e-05 Score=79.50 Aligned_cols=85 Identities=18% Similarity=0.081 Sum_probs=48.9
Q ss_pred cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCC---------CCcccccc
Q 005093 262 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG---------DCFPGLYS 332 (715)
Q Consensus 262 ~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~---------~~~~g~~~ 332 (715)
....+.+||||++| |++++. ...|.++|+.......+. ..+..... ....
T Consensus 322 ~pa~I~lS~DGrfL-YVSnrg---------~d~VavfdV~d~~~~~lv-------~~I~tGG~~~~~~~~~G~~~~---- 380 (462)
T 2ece_A 322 LVTDIDISLDDKFL-YLSLWG---------IGEVRQYDISNPFKPVLT-------GKVKLGGIFHRADHPAGHKLT---- 380 (462)
T ss_dssp CCCCEEECTTSCEE-EEEETT---------TTEEEEEECSSTTSCEEE-------EEEECBTTTTCBCCTTSCCCC----
T ss_pred ceeEEEECCCCCEE-EEEeCC---------CCEEEEEEecCCCCcEEE-------EEEEeCCeeccccccccccCC----
Confidence 46778999999977 566653 235888887533221111 11111100 0111
Q ss_pred CCCCCCccccCCCEEEEEee-----------eCCeeEEEEE--ECCCC
Q 005093 333 SSILSNPWLSDGCTMLLSSI-----------WGSSQVIISV--NVSSG 367 (715)
Q Consensus 333 ~~~~~~~~~~dg~~l~~~~~-----------~~~~~~l~~~--d~~tg 367 (715)
.....+.+++||++||++.. +.....++++ |.++|
T Consensus 381 ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G 428 (462)
T 2ece_A 381 GAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG 428 (462)
T ss_dssp SCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC
T ss_pred CCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC
Confidence 13567889999999988772 2234466655 66667
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.3e-05 Score=80.66 Aligned_cols=251 Identities=13% Similarity=0.079 Sum_probs=131.1
Q ss_pred CCCCceEEEEecCCCCC--CeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccC
Q 005093 51 SPSGSKLLVVRNPENES--PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 127 (715)
Q Consensus 51 Spdg~~la~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 127 (715)
.||++++ |+.+.+... ..+..++ .+++....+.+... .++.+||||++|+.........
T Consensus 81 ~~~~~~v-yV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~-----------Pgia~SpDgk~lyVan~~~~~~------ 142 (426)
T 3c75_H 81 APDARRV-YIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL-----------PHPVAAEDGSFFAQASTVFERI------ 142 (426)
T ss_dssp CCCTTEE-EEEECTTTCSSEEEEEEETTTTEEEEEEEECSS-----------CEEEECTTSSCEEEEEEEEEET------
T ss_pred CCCCCEE-EEECCCcCCCCCeEEEEECCCCEEEEEEECCCC-----------CceEECCCCCEEEEEecccccc------
Confidence 4788775 565543211 4788888 66666555544222 2799999999987764211000
Q ss_pred CCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEe-ecCCC--C----CCccceEEEecCCCCCcc
Q 005093 128 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIP--K----SLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-l~~~~--~----~~~~~~~~~spdg~~~~~ 200 (715)
. .|+ ....|.++|..++++.. +. .. . ......+.+||||++
T Consensus 143 --------------------~---~G~-----~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--- 190 (426)
T 3c75_H 143 --------------------A---RGK-----RTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--- 190 (426)
T ss_dssp --------------------T---EEE-----EEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE---
T ss_pred --------------------c---cCC-----CCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE---
Confidence 0 011 23679999999987653 31 11 1 124567899999996
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce-ecCCCCccccceeEcCCCCeEEEEe
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~spdg~~l~~~~ 279 (715)
++.+. .. ..+.|.++|+ ++++.. .+.-... ....|+|+..++..
T Consensus 191 -lyV~n-~~------------~~~~VsVID~-----------------~t~kvv~~I~v~g~----~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 191 -LLFYQ-FS------------PAPAVGVVDL-----------------EGKTFDRMLDVPDC----YHIFPASPTVFYMN 235 (426)
T ss_dssp -EEEEE-CS------------SSCEEEEEET-----------------TTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred -EEEEe-cC------------CCCeEEEEEC-----------------CCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence 55443 21 1247999997 555443 3322111 22334444333322
Q ss_pred cCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 005093 280 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359 (715)
Q Consensus 280 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l 359 (715)
..+ ..+..+++.+++..... ...+...... ....+.++++++.+++.+. . ..+
T Consensus 236 ~~d----------G~~~~V~~~~~~v~~~~------~~~~~v~~~p--------~~~~~~~~~dg~~~~~~s~-~--g~V 288 (426)
T 3c75_H 236 CRD----------GSLARVDFADGETKVTN------TEVFHTEDEL--------LINHPAFSLRSGRLVWPTY-T--GKI 288 (426)
T ss_dssp ETT----------SSEEEEECCTTCCEEEE------CCCCSCTTSC--------BCSCCEECTTTCEEEEEBT-T--SEE
T ss_pred cCC----------CCEEEEECCCCcEEEEe------eeeeccCCCc--------eeeEeeecCCCCEEEEEeC-C--CcE
Confidence 221 12333343222211000 0000000000 0123457889998888764 2 379
Q ss_pred EEEECCCCcEEEecC-----CC--------CCceeEEEeecCCEEEEEEeCCC------CCCeEEEEeecccC
Q 005093 360 ISVNVSSGELLRITP-----AE--------SNFSWSLLTLDGDNIIAVSSSPV------DVPQVKYGYFVDKA 413 (715)
Q Consensus 360 ~~~d~~tg~~~~l~~-----~~--------~~~~~~~~s~~~~~l~~~~~~~~------~p~~l~~~~~~~~~ 413 (715)
+.+|+.++....+.. .. .......++++++++|+...+.. ....|.++|+.+.+
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 999997666543321 00 01112478899999888765321 13468888876543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.3e-05 Score=77.22 Aligned_cols=216 Identities=10% Similarity=-0.028 Sum_probs=118.2
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec-CCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE-PSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~-~~~ 120 (715)
..+...+++|||+.++. .. +...++.+. .+|+.+.+........ ...+..+.++|||+ |++.... ...
T Consensus 69 ~~~~~l~~~~dg~l~v~--~~--~~~~i~~~d~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~~G~-l~vtd~~~g~~ 138 (296)
T 3e5z_A 69 HHQNGHCLNKQGHLIAC--SH--GLRRLERQREPGGEWESIADSFEGKK-----LNSPNDVCLAPDGS-LWFSDPTYGID 138 (296)
T ss_dssp SSEEEEEECTTCCEEEE--ET--TTTEEEEECSTTCCEEEEECEETTEE-----CCCCCCEEECTTSC-EEEEECSHHHH
T ss_pred CCcceeeECCCCcEEEE--ec--CCCeEEEEcCCCCcEEEEeeccCCCC-----CCCCCCEEECCCCC-EEEECCccccc
Confidence 45678899999985432 22 223577666 4676655543211110 01125799999996 5443110 000
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCcc
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~ 200 (715)
.. ... ...........||.++.+ ++.+.+ .........++|+|||+.
T Consensus 139 ~~--~~~-------------------------~~~~~~~~~~~l~~~~~~-g~~~~~--~~~~~~~~gi~~s~dg~~--- 185 (296)
T 3e5z_A 139 KP--EEG-------------------------YGGEMELPGRWVFRLAPD-GTLSAP--IRDRVKPNGLAFLPSGNL--- 185 (296)
T ss_dssp CG--GGS-------------------------SCCCCCSSSCEEEEECTT-SCEEEE--ECCCSSEEEEEECTTSCE---
T ss_pred cc--ccc-------------------------ccccccCCCcEEEEECCC-CCEEEe--ecCCCCCccEEECCCCCE---
Confidence 00 000 000000123579999987 666665 233334567899999997
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc----eecCCCCccccceeEcCCCCeEE
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~lt~~~~~~~~~~~spdg~~l~ 276 (715)
+ ++.. ....|+++++. ..+.. +.+..........++++||+ |+
T Consensus 186 -l-v~~~--------------~~~~i~~~~~~----------------~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~ 232 (296)
T 3e5z_A 186 -L-VSDT--------------GDNATHRYCLN----------------ARGETEYQGVHFTVEPGKTDGLRVDAGGL-IW 232 (296)
T ss_dssp -E-EEET--------------TTTEEEEEEEC----------------SSSCEEEEEEEECCSSSCCCSEEEBTTSC-EE
T ss_pred -E-EEeC--------------CCCeEEEEEEC----------------CCCcCcCCCeEeeCCCCCCCeEEECCCCC-EE
Confidence 6 5431 22478888861 23433 22222233456789999997 54
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCcc-ccCCCEEEEEeeeCC
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW-LSDGCTMLLSSIWGS 355 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~dg~~l~~~~~~~~ 355 (715)
... . ..|++++..+.....+... . .+..++| ++|++.|++++.
T Consensus 233 v~~-~-----------~~v~~~~~~g~~~~~~~~~--------------------~-~~~~~~f~~~d~~~L~v~t~--- 276 (296)
T 3e5z_A 233 ASA-G-----------DGVHVLTPDGDELGRVLTP--------------------Q-TTSNLCFGGPEGRTLYMTVS--- 276 (296)
T ss_dssp EEE-T-----------TEEEEECTTSCEEEEEECS--------------------S-CCCEEEEESTTSCEEEEEET---
T ss_pred EEc-C-----------CeEEEECCCCCEEEEEECC--------------------C-CceeEEEECCCCCEEEEEcC---
Confidence 444 2 2488888653211111100 0 1345567 588888887664
Q ss_pred eeEEEEEECCCCcEEE
Q 005093 356 SQVIISVNVSSGELLR 371 (715)
Q Consensus 356 ~~~l~~~d~~tg~~~~ 371 (715)
..||++++++++++.
T Consensus 277 -~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 277 -TEFWSIETNVRGLEH 291 (296)
T ss_dssp -TEEEEEECSCCBCCC
T ss_pred -CeEEEEEcccccccc
Confidence 379999998887653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00011 Score=73.78 Aligned_cols=249 Identities=11% Similarity=0.043 Sum_probs=137.0
Q ss_pred EEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccc
Q 005093 16 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 93 (715)
..|+++|+.++.. ...++ +..+...+...+|||+|++||-....+ ...+| .+++..+..... ..
T Consensus 45 ~tV~iWd~~tg~~-~~~~~---~~~~~~~V~~v~~~~~~~~l~sgs~Dg-----~v~iw~~~~~~~~~~~~~h-~~---- 110 (318)
T 4ggc_A 45 NSVYLWSASSGDI-LQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMTSH-SA---- 110 (318)
T ss_dssp TEEEEEETTTCCE-EEEEE---CCSTTCCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECC-SS----
T ss_pred CEEEEEECCCCCE-EEEEE---ecCCCCeEEEEEECCCCCEEEEEECCC-----cEEEeecCCceeEEEecCc-cc----
Confidence 4566666765532 11121 111224588999999999998765543 45566 344433332211 11
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 173 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 173 (715)
....++++++.|+..+.. ..+.+++..++.
T Consensus 111 ------~~~~~~~~~~~l~s~~~~--------------------------------------------~~~~~~~~~~~~ 140 (318)
T 4ggc_A 111 ------RVGSLSWNSYILSSGSRS--------------------------------------------GHIHHHDVRVAE 140 (318)
T ss_dssp ------CEEEEEEETTEEEEEETT--------------------------------------------SEEEEEETTSSS
T ss_pred ------eEEEeecCCCEEEEEecC--------------------------------------------CceEeeecCCCc
Confidence 245677777766654321 445666665543
Q ss_pred eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc
Q 005093 174 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 253 (715)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (715)
....+-...........|+++|+. ++... .+..|.++|+ .+++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~----l~s~~---------------~d~~i~iwd~-----------------~~~~~ 184 (318)
T 4ggc_A 141 HHVATLSGHSQEVCGLRWAPDGRH----LASGG---------------NDNLVNVWPS-----------------APGEG 184 (318)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEES-----------------SCBTT
T ss_pred eeEEEEcCccCceEEEEEcCCCCE----EEEEe---------------cCcceeEEEC-----------------CCCcc
Confidence 322110222334667789999986 66543 2235777776 33321
Q ss_pred -----eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcc
Q 005093 254 -----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 328 (715)
Q Consensus 254 -----~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~ 328 (715)
.........+....++|++..++...... ....|.+++...........
T Consensus 185 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~i~lwd~~~~~~~~~~~------------------ 238 (318)
T 4ggc_A 185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT--------SDRHIRIWNVCSGACLSAVD------------------ 238 (318)
T ss_dssp BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT--------TTCEEEEEETTTCCEEEEEE------------------
T ss_pred cccceeeecccCCceEEEEecCCCCcEEEEEecC--------CCCEEEEEeccccccccccc------------------
Confidence 22333445677889999988887655432 12357777766543311100
Q ss_pred ccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-CCCCceeEEEeecCCEEEE
Q 005093 329 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIA 393 (715)
Q Consensus 329 g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~~~~~l~~ 393 (715)
....+....|+++++.++..+. .....|..+|+.+++...... ....+....|++++..|+.
T Consensus 239 --~~~~v~~~~~~~~~~~~~~~sg-~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S 301 (318)
T 4ggc_A 239 --AHSQVCSILWSPHYKELISGHG-FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301 (318)
T ss_dssp --CSSCEEEEEEETTTTEEEEEEC-TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred --ceeeeeeeeecccccceEEEEE-cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 0012334568888887766543 223457777988887665443 3344445577888776553
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=2e-06 Score=86.68 Aligned_cols=259 Identities=7% Similarity=-0.033 Sum_probs=132.1
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecC--CccEEEEecCccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHG 91 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 91 (715)
....|.++|+.+... ...+.. ..+.+...+|||||+.|+..... +.-.+|.++.. ++...... ....
T Consensus 37 ~dg~v~vw~~~~~~~-~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~~~~~~~~~~~~~~~~---~~~~ 105 (313)
T 3odt_A 37 RDGTVRLWSKDDQWL-GTVVYT-----GQGFLNSVCYDSEKELLLFGGKD--TMINGVPLFATSGEDPLYTLI---GHQG 105 (313)
T ss_dssp TTSEEEEEEESSSEE-EEEEEE-----CSSCEEEEEEETTTTEEEEEETT--SCEEEEETTCCTTSCC-CEEC---CCSS
T ss_pred cCCcEEEEECCCCEE-EEEeec-----CCccEEEEEECCCCCEEEEecCC--CeEEEEEeeecCCCCcccchh---hccc
Confidence 445566666744321 121222 23668999999999999877654 33344444422 22222221 1111
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCccc-CCccCceEEEEEcc
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININ 170 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~ 170 (715)
.+..+.| +++.|+..+.+.... .|. ...................+.+..+..+ .......|.+||..
T Consensus 106 ------~i~~~~~--~~~~l~~~~~d~~i~--~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 173 (313)
T 3odt_A 106 ------NVCSLSF--QDGVVISGSWDKTAK--VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND 173 (313)
T ss_dssp ------CEEEEEE--ETTEEEEEETTSEEE--EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ------CEEEEEe--cCCEEEEEeCCCCEE--EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC
Confidence 1256667 566666654433211 111 0000000001111122223333112222 22234679999842
Q ss_pred CCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC
Q 005093 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 250 (715)
Q Consensus 171 ~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (715)
.....+. ......+..+.|+|+++ ++... .+..|.++|+ .+
T Consensus 174 -~~~~~~~-~~~~~~i~~~~~~~~~~-----~~~~~---------------~dg~i~i~d~-----------------~~ 214 (313)
T 3odt_A 174 -KVIKTFS-GIHNDVVRHLAVVDDGH-----FISCS---------------NDGLIKLVDM-----------------HT 214 (313)
T ss_dssp -EEEEEEC-SSCSSCEEEEEEEETTE-----EEEEE---------------TTSEEEEEET-----------------TT
T ss_pred -ceEEEEe-ccCcccEEEEEEcCCCe-----EEEcc---------------CCCeEEEEEC-----------------Cc
Confidence 2233331 22455678899999986 44433 2246888887 43
Q ss_pred C-CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccc
Q 005093 251 L-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 329 (715)
Q Consensus 251 ~-~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g 329 (715)
+ ....+......+....|+||| +|+..+.+ ..|+++|+.+++..... ..
T Consensus 215 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----------g~v~iwd~~~~~~~~~~----------~~-------- 264 (313)
T 3odt_A 215 GDVLRTYEGHESFVYCIKLLPNG-DIVSCGED-----------RTVRIWSKENGSLKQVI----------TL-------- 264 (313)
T ss_dssp CCEEEEEECCSSCEEEEEECTTS-CEEEEETT-----------SEEEEECTTTCCEEEEE----------EC--------
T ss_pred hhhhhhhhcCCceEEEEEEecCC-CEEEEecC-----------CEEEEEECCCCceeEEE----------ec--------
Confidence 4 344555566778899999999 46655443 25888998775432110 00
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 005093 330 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 369 (715)
Q Consensus 330 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~ 369 (715)
....+..+.|++|++ ++ +...++ .|..+|+.+++.
T Consensus 265 -~~~~i~~~~~~~~~~-~~-~~~~dg--~i~iw~~~~~~~ 299 (313)
T 3odt_A 265 -PAISIWSVDCMSNGD-II-VGSSDN--LVRIFSQEKSRW 299 (313)
T ss_dssp -SSSCEEEEEECTTSC-EE-EEETTS--CEEEEESCGGGC
T ss_pred -cCceEEEEEEccCCC-EE-EEeCCC--cEEEEeCCCCce
Confidence 011345677999998 43 344444 455567666553
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-05 Score=81.12 Aligned_cols=99 Identities=14% Similarity=0.044 Sum_probs=56.6
Q ss_pred ceeEcCCCCeEEEEecCCCCCCCCc-cccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccC
Q 005093 265 FPRFSPDGKFLVFLSAKSSVDSGAH-SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 343 (715)
Q Consensus 265 ~~~~spdg~~l~~~~~~~~~~~g~~-~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 343 (715)
..+++|||++++.....+.. .+.+ .....|+++|+.+++... .+... ....+.|+||
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~-~~~~~~~~~~v~viD~~t~~~v~----------~i~~~-----------~p~~ia~spd 315 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGK-EGTHKFPAAEIWVMDTKTKQRVA----------RIPGR-----------DALSMTIDQQ 315 (361)
T ss_dssp CEEEETTTTEEEEEEESSCC-TTCTTCCCSEEEEEETTTTEEEE----------EEECT-----------TCCEEEEETT
T ss_pred EEEEecCCCeEEEEEccCCC-cccccCCCceEEEEECCCCcEEE----------EEecC-----------CeeEEEECCC
Confidence 36899999988655431110 0111 123479999988755311 00000 1346679999
Q ss_pred CCEEEEEeeeCCeeEEEEEECCCC--cEEEec-CCCCCceeEEEeecCC
Q 005093 344 GCTMLLSSIWGSSQVIISVNVSSG--ELLRIT-PAESNFSWSLLTLDGD 389 (715)
Q Consensus 344 g~~l~~~~~~~~~~~l~~~d~~tg--~~~~l~-~~~~~~~~~~~s~~~~ 389 (715)
|+.||.+ .. ..|..+|++++ +..... .....-....++|+|+
T Consensus 316 g~~l~v~-n~---~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 316 RNLMLTL-DG---GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTEEEEE-CS---SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCEEEEe-CC---CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9966644 33 57778899999 655442 2222223456677765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00012 Score=73.59 Aligned_cols=264 Identities=11% Similarity=0.034 Sum_probs=136.9
Q ss_pred ccceEEeeCCCCceEEEEec----CCCCCCeEEEEe-cCCccEEEEecC-ccccccccCCCcccceeecCCCCeEEEEee
Q 005093 43 TGASAVVPSPSGSKLLVVRN----PENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAE 116 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wSpDg~~la~~~~ 116 (715)
.....++|+|+|+ |+++.. .+.....++.+. .+++...+.... .+... ....+.++||+.+|++...
T Consensus 18 ~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~------~~~~i~~~~~~g~l~v~~~ 90 (314)
T 1pjx_A 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGG------IPAGCQCDRDANQLFVADM 90 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEEC------CEEEEEECSSSSEEEEEET
T ss_pred CCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCC------CCceEEEecCCCcEEEEEC
Confidence 4567899999995 544410 000223577666 566655443200 00101 1268889999334555321
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEee-cCCCC---CCccceEEEe
Q 005093 117 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPK---SLSVGQVVWA 192 (715)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l-~~~~~---~~~~~~~~~s 192 (715)
...|+++|++ |+.+.+ ..... ......+.++
T Consensus 91 --------------------------------------------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d 125 (314)
T 1pjx_A 91 --------------------------------------------RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD 125 (314)
T ss_dssp --------------------------------------------TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC
T ss_pred --------------------------------------------CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC
Confidence 1358999998 776654 31111 1235678999
Q ss_pred cCCCCCccEEEEEeecCccceeeee-eeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEc--
Q 005093 193 PLNEGLHQYLVFVGWSSETRKLGIK-YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFS-- 269 (715)
Q Consensus 193 pdg~~~~~~i~~~~~~~~~~~~g~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~s-- 269 (715)
|||+ |++...........+. ........|++++. . ++.+.+..........+|+
T Consensus 126 ~~g~-----l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~-g~~~~~~~~~~~~~~i~~~~~ 182 (314)
T 1pjx_A 126 YEGN-----LWITAPAGEVAPADYTRSMQEKFGSIYCFTT-----------------D-GQMIQVDTAFQFPNGIAVRHM 182 (314)
T ss_dssp TTSC-----EEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----------------T-SCEEEEEEEESSEEEEEEEEC
T ss_pred CCCC-----EEEEecCcccccccccccccCCCCeEEEECC-----------------C-CCEEEeccCCCCcceEEEecc
Confidence 9986 6665422100000000 00011246888885 4 5554443333345678899
Q ss_pred --CCCCeEEEEecCCCCCCCCccccceeEeeecC-CCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCE
Q 005093 270 --PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP-TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 346 (715)
Q Consensus 270 --pdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~-~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~ 346 (715)
|||+.|++..... ..|+++++. ++.... .... ....... + ..+..++++++|+
T Consensus 183 ~d~dg~~l~v~~~~~----------~~i~~~~~~~~g~~~~-----~~~~--~~~~~~~-~-----~~p~~i~~d~~G~- 238 (314)
T 1pjx_A 183 NDGRPYQLIVAETPT----------KKLWSYDIKGPAKIEN-----KKVW--GHIPGTH-E-----GGADGMDFDEDNN- 238 (314)
T ss_dssp TTSCEEEEEEEETTT----------TEEEEEEEEETTEEEE-----EEEE--EECCCCS-S-----CEEEEEEEBTTCC-
T ss_pred cCCCCCEEEEEECCC----------CeEEEEECCCCCcccc-----ceEE--EECCCCC-C-----CCCCceEECCCCC-
Confidence 9998777665432 358888865 222100 0000 0000000 0 0123466888886
Q ss_pred EEEEeeeCCeeEEEEEECCCCcE-EEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 347 MLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 347 l~~~~~~~~~~~l~~~d~~tg~~-~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
+++.... ...|+++|+++++. ..+...........++++++.|++.... ...|+++++.
T Consensus 239 l~v~~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~l~~~~~~ 298 (314)
T 1pjx_A 239 LLVANWG--SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFEWQ 298 (314)
T ss_dssp EEEEEET--TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEEECS
T ss_pred EEEEEcC--CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC---CCeEEEEeCC
Confidence 6555432 24788899986654 3333222223334567787777766533 2468887765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.33 E-value=5.1e-05 Score=80.46 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=61.2
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|.+||+.++...... ......+..++|||||+. |+... .+..|.++|+
T Consensus 172 g~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~----lasgs---------------~dg~v~iwd~---------- 221 (434)
T 2oit_A 172 GSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQ----LAVGK---------------QNGTVVQYLP---------- 221 (434)
T ss_dssp SCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSC----EEEEE---------------TTSCEEEECT----------
T ss_pred CeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCE----EEEEc---------------CCCcEEEEcc----------
Confidence 56999999888543221 122345778999999998 77654 2236778885
Q ss_pred hhhccCCCCCCceecCCC-------CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCC
Q 005093 242 ELKESSSEDLPVVNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 303 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 303 (715)
.+.....+... ...+....|++++..++..+..+ |.......++++++...
T Consensus 222 -------~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d----g~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 222 -------TLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD----GTLETSPDVVMALLPKK 279 (434)
T ss_dssp -------TCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT----CCSSSCCEEEEEECCCT
T ss_pred -------CCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC----CccCCCCceEEEEeccC
Confidence 32222222221 22577899999998876555443 11122345777777654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-05 Score=79.32 Aligned_cols=201 Identities=11% Similarity=0.031 Sum_probs=114.2
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC
Q 005093 100 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 179 (715)
Q Consensus 100 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~ 179 (715)
.++.|+|+++.|+++.. ....|+++|+++++.+.+.
T Consensus 16 Egp~w~~~~~~l~~~d~-------------------------------------------~~~~i~~~d~~~~~~~~~~- 51 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDI-------------------------------------------PAKKVCRWDSFTKQVQRVT- 51 (297)
T ss_dssp EEEEEETTTTEEEEEET-------------------------------------------TTTEEEEEETTTCCEEEEE-
T ss_pred cCCeEECCCCEEEEEEC-------------------------------------------CCCEEEEEECCCCcEEEEe-
Confidence 58999999999988632 1267999999998876552
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCC
Q 005093 180 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 259 (715)
Q Consensus 180 ~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 259 (715)
. ...+..+.++|||+. +... ...|+++|+ ++++.+.+...
T Consensus 52 -~-~~~~~~i~~~~dG~l-----~v~~----------------~~~l~~~d~-----------------~~g~~~~~~~~ 91 (297)
T 3g4e_A 52 -M-DAPVSSVALRQSGGY-----VATI----------------GTKFCALNW-----------------KEQSAVVLATV 91 (297)
T ss_dssp -C-SSCEEEEEEBTTSSE-----EEEE----------------TTEEEEEET-----------------TTTEEEEEEEC
T ss_pred -C-CCceEEEEECCCCCE-----EEEE----------------CCeEEEEEC-----------------CCCcEEEEEec
Confidence 2 234667899999984 4332 126888986 66666555332
Q ss_pred -----CccccceeEcCCCCeEEEEecCCCCCC-CCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccC
Q 005093 260 -----ISSAFFPRFSPDGKFLVFLSAKSSVDS-GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 333 (715)
Q Consensus 260 -----~~~~~~~~~spdg~~l~~~~~~~~~~~-g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~ 333 (715)
........++|||+ |++......... ........||+++..+ ....+.... .
T Consensus 92 ~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~-------------~------- 149 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQV-------------D------- 149 (297)
T ss_dssp CTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEE-------------S-------
T ss_pred CCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecc-------------c-------
Confidence 12356788999998 656553321000 0001234688887542 221111000 0
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEEC--CCCcEE--E-ecC---CCCCceeEEEeecCCEEEEEEeCCCCCCeEE
Q 005093 334 SILSNPWLSDGCTMLLSSIWGSSQVIISVNV--SSGELL--R-ITP---AESNFSWSLLTLDGDNIIAVSSSPVDVPQVK 405 (715)
Q Consensus 334 ~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~--~tg~~~--~-l~~---~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~ 405 (715)
....++|+|||+.+|+.....+ .|+++++ .+|... + +.. ..+......++++| .|++..... ..|+
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~--~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~---~~v~ 223 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSY--SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNG---GRVI 223 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGT--EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETT---TEEE
T ss_pred cccceEEcCCCCEEEEecCCCC--cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCC---CEEE
Confidence 1245689999998887765444 5666654 577642 2 211 11111223445555 455444332 3477
Q ss_pred EEeeccc
Q 005093 406 YGYFVDK 412 (715)
Q Consensus 406 ~~~~~~~ 412 (715)
+++..++
T Consensus 224 ~~d~~tG 230 (297)
T 3g4e_A 224 RLDPVTG 230 (297)
T ss_dssp EECTTTC
T ss_pred EEcCCCc
Confidence 7775433
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00016 Score=75.20 Aligned_cols=178 Identities=11% Similarity=-0.006 Sum_probs=109.8
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|++++++++..+.+. ...-.....+++.+.+.. |+++.. ....|+++++
T Consensus 138 ~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~----lY~~d~--------------~~~~I~~~~~---------- 188 (386)
T 3v65_B 138 DRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDK----LYWTDS--------------GTSRIEVANL---------- 188 (386)
T ss_dssp TEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTTTE----EEEEET--------------TTTEEEECBT----------
T ss_pred CcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCCCe----EEEEcC--------------CCCeEEEEeC----------
Confidence 67999999988766552 222224557788888877 777642 2237888886
Q ss_pred hhhccCCCCCCceecCC-CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 242 ELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~-~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
++...+.+.. ........+++|++..|+|+.... ...|+++++++...+.+....
T Consensus 189 -------dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~~-------- 244 (386)
T 3v65_B 189 -------DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---------TPRIEASSMDGSGRRIIADTH-------- 244 (386)
T ss_dssp -------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEEEECSS--------
T ss_pred -------CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC---------CCEEEEEeCCCCCcEEEEECC--------
Confidence 5544444433 334567789999999998886442 246999998764432221100
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCC
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 400 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~ 400 (715)
.. .+..++|++++..||++-. ....|+++|++++..+.+...... .-..++.+++.||++.. .
T Consensus 245 ----~~-------~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav~~~~ly~td~---~ 307 (386)
T 3v65_B 245 ----LF-------WPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLP-HPFAITVFEDSLYWTDW---H 307 (386)
T ss_dssp ----CS-------CEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEEECSSCS-SEEEEEEETTEEEEEET---T
T ss_pred ----CC-------CeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEEECCCC-CceEEEEECCEEEEeeC---C
Confidence 00 1345678888888888643 446899999976655555433221 22344556777777653 3
Q ss_pred CCeEEEEee
Q 005093 401 VPQVKYGYF 409 (715)
Q Consensus 401 p~~l~~~~~ 409 (715)
...|.+++.
T Consensus 308 ~~~V~~~~~ 316 (386)
T 3v65_B 308 TKSINSANK 316 (386)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEEEC
Confidence 345777763
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00052 Score=70.23 Aligned_cols=178 Identities=11% Similarity=-0.007 Sum_probs=109.5
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|++++++++..+.+. ...-.....+++.+.+.. |+++.. ....|+++++
T Consensus 95 ~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~----ly~~d~--------------~~~~I~~~~~---------- 145 (349)
T 3v64_C 95 DRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDK----LYWTDS--------------GTSRIEVANL---------- 145 (349)
T ss_dssp TEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET----------
T ss_pred CceEEEecCCCCceEEE-eCCCCCccEEEEecCCCe----EEEEcC--------------CCCeEEEEcC----------
Confidence 67999999988766652 122223457788887777 777642 2237999997
Q ss_pred hhhccCCCCCCceecCC-CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 242 ELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~-~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
++...+.+.. ........+++|++..|+|+.... ...|+++++++...+.+....
T Consensus 146 -------dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~~-------- 201 (349)
T 3v64_C 146 -------DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---------TPRIEASSMDGSGRRIIADTH-------- 201 (349)
T ss_dssp -------TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEESCCSS--------
T ss_pred -------CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC---------CCEEEEEeCCCCCcEEEEECC--------
Confidence 5544444433 334567789999988898887542 246999998775443221100
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCC
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 400 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~ 400 (715)
.. .+..+++++++..||++-. +...|+++|++++..+.+...... .-..++.+++.|+++...
T Consensus 202 ----~~-------~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav~~~~ly~td~~--- 264 (349)
T 3v64_C 202 ----LF-------WPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLP-HPFAITVFEDSLYWTDWH--- 264 (349)
T ss_dssp ----CS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCS-SEEEEEEETTEEEEEETT---
T ss_pred ----CC-------CcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEEeCCCC-CceEEEEECCEEEEecCC---
Confidence 00 1345678888888888643 446899999976655555433221 122344466777776532
Q ss_pred CCeEEEEee
Q 005093 401 VPQVKYGYF 409 (715)
Q Consensus 401 p~~l~~~~~ 409 (715)
...|.+++.
T Consensus 265 ~~~V~~~~~ 273 (349)
T 3v64_C 265 TKSINSANK 273 (349)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEEEc
Confidence 335777663
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00025 Score=71.51 Aligned_cols=230 Identities=8% Similarity=-0.044 Sum_probs=133.9
Q ss_pred eEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCC
Q 005093 56 KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 134 (715)
Q Consensus 56 ~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 134 (715)
.|+|.... .+..++ .+++...+....... .++.|++++++|++.-.
T Consensus 3 ~ll~~~~~-----~I~~i~~~~~~~~~~~~~~~~p----------~g~~~d~~~~~ly~~D~------------------ 49 (316)
T 1ijq_A 3 YLFFTNRH-----EVRKMTLDRSEYTSLIPNLRNV----------VALDTEVASNRIYWSDL------------------ 49 (316)
T ss_dssp EEEEECBS-----SEEEEETTSCCCEEEECSCSSE----------EEEEEETTTTEEEEEET------------------
T ss_pred EEEEECCC-----eEEEEECCCcceEehhcCCCce----------EEEEEEeCCCEEEEEEC------------------
Confidence 45555333 477777 555555544322222 58999999988877521
Q ss_pred CCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC----CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCc
Q 005093 135 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS----GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 210 (715)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~ 210 (715)
....|+++++++ .....+. ...-.....+++.+.+.. |+++..
T Consensus 50 -------------------------~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavd~~~~~----ly~~d~--- 96 (316)
T 1ijq_A 50 -------------------------SQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--- 96 (316)
T ss_dssp -------------------------TTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTE----EEEEET---
T ss_pred -------------------------CCCcEEEEECCCCCCCcccEEEE-eCCCCCcCEEEEeecCCe----EEEEEC---
Confidence 126799999886 3333331 111123557788887776 776642
Q ss_pred cceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC-CCccccceeEcCCCCeEEEEecCCCCCCCCc
Q 005093 211 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 289 (715)
Q Consensus 211 ~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~ 289 (715)
....|.++++ ++...+.+.. ........+++|++.+|+|+....
T Consensus 97 -----------~~~~I~~~~~-----------------~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~------- 141 (316)
T 1ijq_A 97 -----------VLGTVSVADT-----------------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------- 141 (316)
T ss_dssp -----------TTTEEEEEET-----------------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-------
T ss_pred -----------CCCEEEEEeC-----------------CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC-------
Confidence 2247889996 5554444433 334567788999888898876431
Q ss_pred cccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 005093 290 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 369 (715)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~ 369 (715)
...|+++++++...+.+... ... .+..++|++++..||++-. ...+|+++|+++...
T Consensus 142 --~~~I~~~~~dG~~~~~~~~~------------~~~-------~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~~ 198 (316)
T 1ijq_A 142 --PAKIKKGGLNGVDIYSLVTE------------NIQ-------WPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNR 198 (316)
T ss_dssp --SCEEEEEETTSCCEEEEECS------------SCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSC
T ss_pred --CCeEEEEcCCCCCeEEEEEC------------CCC-------CceEEEEeccCCEEEEEEC--CCCeEEEEecCCCce
Confidence 24699998876432211100 000 2346678888888888643 446899999987666
Q ss_pred EEecCCC-CCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 370 LRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 370 ~~l~~~~-~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+.+.... ....-..++.+++.++++.. ...+|++++..++
T Consensus 199 ~~~~~~~~~~~~P~giav~~~~ly~~d~---~~~~V~~~~~~~g 239 (316)
T 1ijq_A 199 KTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTG 239 (316)
T ss_dssp EEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTC
T ss_pred EEEeecCCccCCcEEEEEECCEEEEEEC---CCCeEEEEeCCCC
Confidence 6554322 11112345556778877652 3356888775444
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.21 E-value=4.2e-05 Score=81.89 Aligned_cols=115 Identities=10% Similarity=0.066 Sum_probs=68.7
Q ss_pred ccceEEeeCC-----CCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceee-c-CCCCeEEEE
Q 005093 43 TGASAVVPSP-----SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW-N-SDETLIAYV 114 (715)
Q Consensus 43 ~~~~~~~~Sp-----dg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-S-pDg~~la~~ 114 (715)
|..-.|..|. ||++|. +.+. .+..+..|+ +..+..+++.++.+. ...++++ + ||+++++..
T Consensus 85 gd~hh~~~s~t~g~~DG~~lf-Vnd~--~~~rVavIdl~t~~~~~ii~ip~g~--------~phg~~~~~~p~~~~v~~~ 153 (595)
T 1fwx_A 85 GDLHHVHMSFTEGKYDGRFLF-MNDK--ANTRVARVRCDVMKCDAILEIPNAK--------GIHGLRPQKWPRSNYVFCN 153 (595)
T ss_dssp CCBCCEEEEEETTEEEEEEEE-EEET--TTTEEEEEETTTTEEEEEEECSSCC--------SEEEEEECCSSBCSEEEEE
T ss_pred CCCCccccCCCCCCcCCCEEE-EEcC--CCCEEEEEECCCceEeeEEeCCCCC--------CCcceeeeecCCCcEEEEe
Confidence 5566688888 998875 5332 566788888 666777777765432 1147776 6 999998554
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEe-ecCCCCCCccceEEEec
Q 005093 115 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAP 193 (715)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~~~~~~~~~~sp 193 (715)
.+...+- .+. +...+.++ .....+-++|.++.++.. +. ..+ .......||
T Consensus 154 ~~~~~p~--------~~d-----------g~~l~~~~-------~~~~~vtvID~~t~~v~~qI~-Vgg--~pd~~~~sp 204 (595)
T 1fwx_A 154 GEDETPL--------VND-----------GTNMEDVA-------NYVNVFTAVDADKWEVAWQVL-VSG--NLDNCDADY 204 (595)
T ss_dssp ECSCEES--------SCS-----------SSSTTCGG-------GEEEEEEEEETTTTEEEEEEE-ESS--CCCCEEECS
T ss_pred ccccccc--------CCC-----------Cccccccc-------ccCceEEEEECCCCeEEEEEE-eCC--CccceEECC
Confidence 3322100 000 11111111 134679999999887643 31 122 355678999
Q ss_pred CCCC
Q 005093 194 LNEG 197 (715)
Q Consensus 194 dg~~ 197 (715)
||+.
T Consensus 205 dGk~ 208 (595)
T 1fwx_A 205 EGKW 208 (595)
T ss_dssp SSSE
T ss_pred CCCE
Confidence 9995
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00021 Score=70.05 Aligned_cols=237 Identities=7% Similarity=-0.022 Sum_probs=124.3
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 123 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 123 (715)
.....+++|||+ |+++... ....++.+..++.......... . .....+.++|||+ |++. ..
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~--~~~~i~~~~~~~~~~~~~~~~~-~-------~~p~~i~~~~~g~-l~v~-~~------ 85 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEG--MYGRVVKLATGSTGTTVLPFNG-L-------YQPQGLAVDGAGT-VYVT-DF------ 85 (270)
T ss_dssp CEEEEEECTTCC-EEEEECS--SSCEEEEECC-----EECCCCS-C-------CSCCCEEECTTCC-EEEE-ET------
T ss_pred CccceEECCCCC-EEEEccC--CCCcEEEecCCCcccceEeeCC-c-------CCcceeEECCCCC-EEEE-cC------
Confidence 567889999997 5441433 2235666653332222221111 0 1226889999997 5443 21
Q ss_pred CccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEE
Q 005093 124 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 203 (715)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~ 203 (715)
...|+++|.+++....+. .........+.++|+|+ |+
T Consensus 86 -------------------------------------~~~i~~~d~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----l~ 122 (270)
T 1rwi_B 86 -------------------------------------NNRVVTLAAGSNNQTVLP-FDGLNYPEGLAVDTQGA-----VY 122 (270)
T ss_dssp -------------------------------------TTEEEEECTTCSCCEECC-CCSCSSEEEEEECTTCC-----EE
T ss_pred -------------------------------------CCEEEEEeCCCceEeeee-cCCcCCCcceEECCCCC-----EE
Confidence 146888998877665552 12223456788999886 55
Q ss_pred EEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC-CCccccceeEcCCCCeEEEEecCC
Q 005093 204 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
++.. ....|++++. .+........ ........+++|||+ |+++...
T Consensus 123 v~~~--------------~~~~i~~~~~-----------------~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~- 169 (270)
T 1rwi_B 123 VADR--------------GNNRVVKLAA-----------------GSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD- 169 (270)
T ss_dssp EEEG--------------GGTEEEEECT-----------------TCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGG-
T ss_pred EEEC--------------CCCEEEEEEC-----------------CCceeEeeccccCCCceeEEEeCCCC-EEEEECC-
Confidence 5431 1236888874 3333222222 223467789999997 5554432
Q ss_pred CCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 005093 283 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 362 (715)
Q Consensus 283 ~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~ 362 (715)
...|++++..+......... .+ ..+..+++.++|. ++++... ...|+++
T Consensus 170 ---------~~~i~~~~~~~~~~~~~~~~--------------~~-----~~p~~i~~d~~g~-l~v~~~~--~~~v~~~ 218 (270)
T 1rwi_B 170 ---------NNRVVKLEAESNNQVVLPFT--------------DI-----TAPWGIAVDEAGT-VYVTEHN--TNQVVKL 218 (270)
T ss_dssp ---------GTEEEEECTTTCCEEECCCS--------------SC-----CSEEEEEECTTCC-EEEEETT--TSCEEEE
T ss_pred ---------CCEEEEEecCCCceEeeccc--------------CC-----CCceEEEECCCCC-EEEEECC--CCcEEEE
Confidence 23588898766432111000 00 0233556788884 6665432 3468888
Q ss_pred ECCCCcEEEecCCC-CCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 363 NVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 363 d~~tg~~~~l~~~~-~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
++++.....+.... .......++++|+ ++++.... ..|.++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~---~~v~~~~~~ 263 (270)
T 1rwi_B 219 LAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGN---DRVVKLTSL 263 (270)
T ss_dssp CTTCSCCEECCCCSCSCEEEEEECTTCC-EEEEEGGG---TEEEEECCC
T ss_pred cCCCCcceeeccCCCCCceeEEECCCCC-EEEEECCC---CEEEEEcCC
Confidence 98766555443222 1122234555553 55444322 245555543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0002 Score=73.44 Aligned_cols=162 Identities=9% Similarity=0.052 Sum_probs=106.0
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
.....++|+|.+..|+++.. ....|+.+. .++..+.+...... ...++++.+.+..|++.-.
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~---~~~~I~r~~~~g~~~~~~~~~~~~---------~p~glavd~~~g~ly~~d~----- 135 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDV---TLDRILRANLNGSNVEEVVSTGLE---------SPGGLAVDWVHDKLYWTDS----- 135 (349)
T ss_dssp SCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSCS---------CCCEEEEETTTTEEEEEET-----
T ss_pred CceEEEEEeccccEEEEEec---cCCceEEEecCCCCceEEEeCCCC---------CccEEEEecCCCeEEEEcC-----
Confidence 45678899999888877643 234677777 55454444332111 1158889888888877521
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccE
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~ 201 (715)
....|+++++++...+.+. ...-.....+++.|++..
T Consensus 136 --------------------------------------~~~~I~~~~~dG~~~~~l~-~~~l~~P~~iavdp~~g~---- 172 (349)
T 3v64_C 136 --------------------------------------GTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGT---- 172 (349)
T ss_dssp --------------------------------------TTTEEEEEETTSCSCEEEE-CTTCSCEEEEEEETTTTE----
T ss_pred --------------------------------------CCCeEEEEcCCCCceEEEE-eCCCCCcceEEEecCcCe----
Confidence 1267999999887666552 122234567889998876
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC-CCccccceeEcCCCCeEEEEec
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~~~~spdg~~l~~~~~ 280 (715)
|+++.+.. ...|+++++ ++...+.+.. .......++++|++++|+|+..
T Consensus 173 ly~td~~~-------------~~~I~r~~~-----------------dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 173 IYWTDWGN-------------TPRIEASSM-----------------DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp EEEEECSS-------------SCEEEEEET-----------------TSCSCEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEeccCC-------------CCEEEEEeC-----------------CCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence 77765321 247999997 5555555433 3334678999999999998875
Q ss_pred CCCCCCCCccccceeEeeecCCCC
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNG 304 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~ 304 (715)
.. ..|+++++++..
T Consensus 223 ~~----------~~I~~~~~dG~~ 236 (349)
T 3v64_C 223 KH----------HVIERANLDGSH 236 (349)
T ss_dssp TT----------TEEEEEETTSCS
T ss_pred CC----------CEEEEEeCCCCc
Confidence 43 469999987643
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00029 Score=70.98 Aligned_cols=185 Identities=9% Similarity=0.029 Sum_probs=113.8
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCcc-EEEEecC-ccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL-EKEFHVP-QTVHG 91 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~~ 91 (715)
...|+.+++++...+.+.+ ...........|.+.++.|+++.. ....|+.+. .++.. ..+.... ...
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-----~~~~~~~~~ld~d~~~~~lyw~D~---~~~~I~r~~~~g~~~~~~~~~~~l~~p-- 81 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-----VGGLEDAAAVDFVFSHGLIYWSDV---SEEAIKRTEFNKTESVQNVVVSGLLSP-- 81 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-----EEEEEEEEEEEEEGGGTEEEEEET---TTTEEEEEETTSSSCCCEEEEECCSCC--
T ss_pred cCeEEEEECCCCceEEEEE-----ecCCCccEEEEEEeCCCEEEEEEC---CCCcEEEEEccCCCceEEEEcCCCCCc--
Confidence 4578887776654221111 112244667889998888877643 234677777 44422 2222211 122
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
.++++.+.+..|++. +. ....|.++++++
T Consensus 82 --------~glavd~~~g~ly~~-d~------------------------------------------~~~~I~~~~~dG 110 (318)
T 3sov_A 82 --------DGLACDWLGEKLYWT-DS------------------------------------------ETNRIEVSNLDG 110 (318)
T ss_dssp --------CEEEEETTTTEEEEE-ET------------------------------------------TTTEEEEEETTS
T ss_pred --------cEEEEEcCCCeEEEE-EC------------------------------------------CCCEEEEEECCC
Confidence 578888888888764 21 126799999988
Q ss_pred CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC
Q 005093 172 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 251 (715)
Q Consensus 172 g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (715)
...+.+. ...-.....++..|++.. |+++.+. ....|+++++ ++.
T Consensus 111 ~~~~~l~-~~~~~~P~giavdp~~g~----ly~td~~-------------~~~~I~r~~~-----------------dG~ 155 (318)
T 3sov_A 111 SLRKVLF-WQELDQPRAIALDPSSGF----MYWTDWG-------------EVPKIERAGM-----------------DGS 155 (318)
T ss_dssp CSCEEEE-CSSCSSEEEEEEEGGGTE----EEEEECS-------------SSCEEEEEET-----------------TSC
T ss_pred CcEEEEE-eCCCCCccEEEEeCCCCE----EEEEecC-------------CCCEEEEEEc-----------------CCC
Confidence 7666552 122224567788888776 7766421 2247999997 554
Q ss_pred Cceec-CCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 252 PVVNL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 252 ~~~~l-t~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
..+.+ .........++|+|++++|+|+.... ..|+++++++...
T Consensus 156 ~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~----------~~I~~~d~dG~~~ 200 (318)
T 3sov_A 156 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKL----------NFIHKSNLDGTNR 200 (318)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTT----------TEEEEEETTSCSC
T ss_pred CeEEEEECCCCCccEEEEeccCCEEEEEECCC----------CEEEEEcCCCCce
Confidence 44444 33334567899999999999987553 4699999876443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00011 Score=76.45 Aligned_cols=161 Identities=9% Similarity=0.062 Sum_probs=104.8
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
.....++|.+++.+|+++.. ....|+.+. .++..+.+...... ...++++.+.+..|++.-.
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~---~~~~I~r~~~~g~~~~~~~~~~~~---------~p~glavd~~~g~lY~~d~----- 178 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDV---TLDRILRANLNGSNVEEVVSTGLE---------SPGGLAVDWVHDKLYWTDS----- 178 (386)
T ss_dssp SCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCEEEEECSSCS---------CCCCEEEETTTTEEEEEET-----
T ss_pred CccEEEEEecCCCeEEEEeC---CCCcEEEEecCCCCcEEEEeCCCC---------CccEEEEEeCCCeEEEEcC-----
Confidence 55778899999888877643 234677777 44444444322111 1157889988888877521
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCC-CccceEEEecCCCCCcc
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~~~~~~spdg~~~~~ 200 (715)
....|+++++++...+.+ .... .....+++.|++..
T Consensus 179 --------------------------------------~~~~I~~~~~dg~~~~~l--~~~~l~~P~giavdp~~g~--- 215 (386)
T 3v65_B 179 --------------------------------------GTSRIEVANLDGAHRKVL--LWQSLEKPRAIALHPMEGT--- 215 (386)
T ss_dssp --------------------------------------TTTEEEECBTTSCSCEEE--ECSSCSCEEEEEEETTTTE---
T ss_pred --------------------------------------CCCeEEEEeCCCCceEEe--ecCCCCCCcEEEEEcCCCe---
Confidence 125688888887765555 2222 34567889998887
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecC-CCCccccceeEcCCCCeEEEEe
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~~~~spdg~~l~~~~ 279 (715)
|+++.+.. ...|+++++ ++...+.+. ........++|+|++++|+|+.
T Consensus 216 -ly~td~~~-------------~~~I~r~~~-----------------dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 216 -IYWTDWGN-------------TPRIEASSM-----------------DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp -EEEEECSS-------------SCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred -EEEeccCC-------------CCEEEEEeC-----------------CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE
Confidence 77764311 247999997 554444443 3333567899999999999887
Q ss_pred cCCCCCCCCccccceeEeeecCCCC
Q 005093 280 AKSSVDSGAHSATDSLHRIDWPTNG 304 (715)
Q Consensus 280 ~~~~~~~g~~~~~~~l~~~~~~~~~ 304 (715)
... ..|+++++++..
T Consensus 265 ~~~----------~~I~~~d~dG~~ 279 (386)
T 3v65_B 265 AKH----------HVIERANLDGSH 279 (386)
T ss_dssp TTT----------TEEEEECTTSCS
T ss_pred CCC----------CEEEEEeCCCCe
Confidence 553 469999987643
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00078 Score=67.52 Aligned_cols=228 Identities=13% Similarity=0.115 Sum_probs=119.1
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
...++|+|+|+ |+++ +. ....++.+...+............ .++.++|||+ | |+++..
T Consensus 34 pegia~~~~g~-lyv~-d~--~~~~I~~~d~~g~~~~~~~~~~~p----------~gia~~~dG~-l-~vad~~------ 91 (306)
T 2p4o_A 34 LENLASAPDGT-IFVT-NH--EVGEIVSITPDGNQQIHATVEGKV----------SGLAFTSNGD-L-VATGWN------ 91 (306)
T ss_dssp EEEEEECTTSC-EEEE-ET--TTTEEEEECTTCCEEEEEECSSEE----------EEEEECTTSC-E-EEEEEC------
T ss_pred cceEEECCCCC-EEEE-eC--CCCeEEEECCCCceEEEEeCCCCc----------eeEEEcCCCc-E-EEEecc------
Confidence 46789999987 5444 43 233678777445544444443333 6899999998 5 444321
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEE
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 204 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~ 204 (715)
. ....|+.++..+|+.+.+...+...........+++ . ++
T Consensus 92 -----------------------------~-----~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~----~~- 131 (306)
T 2p4o_A 92 -----------------------------A-----DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-Q----YL- 131 (306)
T ss_dssp -----------------------------T-----TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-E----EE-
T ss_pred -----------------------------C-----CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-c----EE-
Confidence 0 114588888888887665211111112233333333 2 33
Q ss_pred EeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC--ce---------ecCCCCccccceeEcCCCC
Q 005093 205 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VV---------NLTESISSAFFPRFSPDGK 273 (715)
Q Consensus 205 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~lt~~~~~~~~~~~spdg~ 273 (715)
.... ....||++|. .++. .. ...........+ +|||+
T Consensus 132 v~d~-------------~~g~i~~~d~-----------------~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~ 179 (306)
T 2p4o_A 132 TADS-------------YRGAIWLIDV-----------------VQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN 179 (306)
T ss_dssp EEET-------------TTTEEEEEET-----------------TTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred EEEC-------------CCCeEEEEeC-----------------CCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence 3321 2347888885 3221 11 000111112223 89999
Q ss_pred eEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeee
Q 005093 274 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 353 (715)
Q Consensus 274 ~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~ 353 (715)
+|+++.... ..|+++++++.+. +... ...... ..+..+++.+||+ ||+...
T Consensus 180 ~lyv~d~~~----------~~I~~~~~~~~g~--~~~~-~~~~~~--------------~~P~gi~vd~dG~-l~va~~- 230 (306)
T 2p4o_A 180 FLYVSNTEK----------MLLLRIPVDSTDK--PGEP-EIFVEQ--------------TNIDDFAFDVEGN-LYGATH- 230 (306)
T ss_dssp EEEEEETTT----------TEEEEEEBCTTSC--BCCC-EEEEES--------------CCCSSEEEBTTCC-EEEECB-
T ss_pred EEEEEeCCC----------CEEEEEEeCCCCC--CCcc-EEEecc--------------CCCCCeEECCCCC-EEEEeC-
Confidence 887766442 4699999875221 1100 000000 1245677888996 555433
Q ss_pred CCeeEEEEEECCCCcEEEe---cCCCCCceeEEEe---ecCCEEEEEEeC
Q 005093 354 GSSQVIISVNVSSGELLRI---TPAESNFSWSLLT---LDGDNIIAVSSS 397 (715)
Q Consensus 354 ~~~~~l~~~d~~tg~~~~l---~~~~~~~~~~~~s---~~~~~l~~~~~~ 397 (715)
+..+|.+++.+ |+...+ ...........|. ++++.||++...
T Consensus 231 -~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 231 -IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp -TTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred -CCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 23468889985 665443 2221112334555 677888877654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00016 Score=69.98 Aligned_cols=179 Identities=17% Similarity=0.120 Sum_probs=102.5
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|.++|+++|++..-...... .....++++|++ |+...+ ....++++|.
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~--~fgeGi~~~g~~----lyv~t~--------------~~~~v~viD~---------- 93 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDS--YFGEGLTLLNEK----LYQVVW--------------LKNIGFIYDR---------- 93 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTT--CCEEEEEEETTE----EEEEET--------------TCSEEEEEET----------
T ss_pred CEEEEEECCCCCEEEEEecCCC--cceEEEEEeCCE----EEEEEe--------------cCCEEEEEEC----------
Confidence 7899999999987654111221 122235556776 666654 2237999996
Q ss_pred hhhccCCCCCCc-eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC-Ccccceeeeeece
Q 005093 242 ELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVV 319 (715)
Q Consensus 242 ~~~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~ 319 (715)
++.+. ..+.-. .......++||++|+ .++.+ ..|+++|..+.+.. .+.-+.
T Consensus 94 -------~t~~v~~~i~~g--~~~g~glt~Dg~~l~-vs~gs----------~~l~viD~~t~~v~~~I~Vg~------- 146 (266)
T 2iwa_A 94 -------RTLSNIKNFTHQ--MKDGWGLATDGKILY-GSDGT----------SILYEIDPHTFKLIKKHNVKY------- 146 (266)
T ss_dssp -------TTTEEEEEEECC--SSSCCEEEECSSSEE-EECSS----------SEEEEECTTTCCEEEEEECEE-------
T ss_pred -------CCCcEEEEEECC--CCCeEEEEECCCEEE-EECCC----------CeEEEEECCCCcEEEEEEECC-------
Confidence 55433 334322 112244788999886 45432 36999998775431 111110
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC--------------CCceeEEEe
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--------------SNFSWSLLT 385 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~--------------~~~~~~~~s 385 (715)
.+ .+ ...+..+.|. || .+|... + ....|..+|++++++.....-. .......++
T Consensus 147 ----~~-~p---~~~~nele~~-dg-~lyvn~-~-~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~ 214 (266)
T 2iwa_A 147 ----NG-HR---VIRLNELEYI-NG-EVWANI-W-QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD 214 (266)
T ss_dssp ----TT-EE---CCCEEEEEEE-TT-EEEEEE-T-TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred ----CC-cc---cccceeEEEE-CC-EEEEec-C-CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc
Confidence 00 00 0012234566 66 466443 2 2458999999999976544321 112345788
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 386 LDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 386 ~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+++++++++.... +.++.+++.+.
T Consensus 215 ~~~~~lfVTgk~~---~~v~~i~l~~~ 238 (266)
T 2iwa_A 215 QENKRIFVTGKLW---PKLFEIKLHLV 238 (266)
T ss_dssp TTTTEEEEEETTC---SEEEEEEEEEC
T ss_pred CCCCEEEEECCCC---CeEEEEEEecc
Confidence 8999988877443 56888887643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.13 E-value=4.3e-05 Score=81.10 Aligned_cols=94 Identities=15% Similarity=0.090 Sum_probs=57.9
Q ss_pred ceEEEEEccCC-----ce-E---eecC-CCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEec
Q 005093 162 PSLFVININSG-----EV-Q---AVKG-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 231 (715)
Q Consensus 162 ~~l~~~~~~~g-----~~-~---~l~~-~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 231 (715)
..|.+||++++ +. + .+.. ......+..++|+|++.. ++.++.. +..|.++|+
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~----~las~s~--------------Dg~v~iwD~ 179 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS----MVAVCLA--------------DGSIAVLQV 179 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT----EEEEEET--------------TSCEEEEEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC----EEEEEEC--------------CCeEEEEEc
Confidence 67999999765 11 0 1110 112345778999999555 5555422 235777786
Q ss_pred ccccchhhhhhhhccCCCCCCce-ecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecC
Q 005093 232 SLYKSEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 301 (715)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~ 301 (715)
.++... ........+...+|||||++|+..+.+. .|.++|..
T Consensus 180 -----------------~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg-----------~v~iwd~~ 222 (434)
T 2oit_A 180 -----------------TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNG-----------TVVQYLPT 222 (434)
T ss_dssp -----------------SSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTS-----------CEEEECTT
T ss_pred -----------------CCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCC-----------cEEEEccC
Confidence 444322 2222344678899999999998777542 47788876
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00071 Score=68.65 Aligned_cols=116 Identities=11% Similarity=0.051 Sum_probs=61.1
Q ss_pred ccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCcccc
Q 005093 263 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 342 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 342 (715)
...++++||+..|+++.... ..|.+++..+++.... +...... ..+..+.++|
T Consensus 198 p~gia~d~~~g~l~v~d~~~----------~~I~~~~~~~G~~~~~----------~~~~~~~-------~~~~~~~~~p 250 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADREN----------GRIQCFKTDTKEFVRE----------IKHASFG-------RNVFAISYIP 250 (329)
T ss_dssp EEEEEEETTTTEEEEEETTT----------TEEEEEETTTCCEEEE----------ECCTTTT-------TCEEEEEEET
T ss_pred CcEEEEECCCCEEEEEECCC----------CEEEEEECCCCcEEEE----------EeccccC-------CCcceeeecC
Confidence 56788999977776665442 3688888875443110 0000000 0122344566
Q ss_pred CCCEEEEEee-----eCCeeEEEEEECCCCcEEEecCC----CCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 343 DGCTMLLSSI-----WGSSQVIISVNVSSGELLRITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 343 dg~~l~~~~~-----~~~~~~l~~~d~~tg~~~~l~~~----~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
+ .++.... ......++.+|+.+|+....... ........++++| .|+++..... +|.++++..
T Consensus 251 -g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~---~I~~~~~~~ 322 (329)
T 3fvz_A 251 -G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTN---TVWKFTLTE 322 (329)
T ss_dssp -T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSC---CEEEEEEEE
T ss_pred -C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCC---EEEEEeCCc
Confidence 3 2222211 12344788999888887766421 1122334566766 6665553332 577777653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00065 Score=70.91 Aligned_cols=182 Identities=8% Similarity=-0.056 Sum_probs=108.8
Q ss_pred ceEEEEEccCC----ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 162 PSLFVININSG----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 162 ~~l~~~~~~~g----~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
..|+.+++++. ....+. ...-.....+++.+.+.. |+++.. ....|.++++
T Consensus 134 ~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~~~----lY~~d~--------------~~~~I~~~~~------ 188 (400)
T 3p5b_L 134 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 188 (400)
T ss_dssp TEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTTTE----EEEEET--------------TTTEEEEECT------
T ss_pred CeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecCCc----eEEEEC--------------CCCeEEEEeC------
Confidence 56888888762 233331 222224556777776776 776642 2247889997
Q ss_pred hhhhhhhccCCCCCCceecCC-CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeee
Q 005093 238 ASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 316 (715)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~lt~-~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~ 316 (715)
++...+.+.. .......+++.|.+.+|+|+.... ...|+++++++...+.+....
T Consensus 189 -----------~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~---------~~~I~~~~~dG~~~~~~~~~~---- 244 (400)
T 3p5b_L 189 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTEN---- 244 (400)
T ss_dssp -----------TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS---------SCCEEEEETTSCSCEEEECSS----
T ss_pred -----------CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC---------CCEEEEEeCCCCccEEEEECC----
Confidence 5555555543 333467789999888898887432 135999998775443221100
Q ss_pred eceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeEEEeecCCEEEEEE
Q 005093 317 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 317 ~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~~~~~l~~~~ 395 (715)
.. .+..+++++++..||++- .....|+++|++++..+.+..... ...-..++.+++.||++.
T Consensus 245 --------l~-------~P~glavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd 307 (400)
T 3p5b_L 245 --------IQ-------WPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 307 (400)
T ss_dssp --------CS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEE
T ss_pred --------CC-------ceEEEEEEeCCCEEEEEE--CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEec
Confidence 00 234567888888888864 345689999998776666654322 112235666788888776
Q ss_pred eCCCCCCeEEEEeeccc
Q 005093 396 SSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 396 ~~~~~p~~l~~~~~~~~ 412 (715)
.. ...|++++..++
T Consensus 308 ~~---~~~V~~~~~~~G 321 (400)
T 3p5b_L 308 II---NEAIFSANRLTG 321 (400)
T ss_dssp SS---SCSEEEEESSSC
T ss_pred CC---CCeEEEEEcCCC
Confidence 32 345777774444
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00031 Score=70.29 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=27.5
Q ss_pred cCceEEEEEccCCceE-eecCCC-CCCccceEEEecCCCCCccEEEEEe
Q 005093 160 RQPSLFVININSGEVQ-AVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVG 206 (715)
Q Consensus 160 ~~~~l~~~~~~~g~~~-~l~~~~-~~~~~~~~~~spdg~~~~~~i~~~~ 206 (715)
....|.+||+++|+.. .+.+.. ....+...+|||||+. ++...
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~----lvs~s 245 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL----FIVLS 245 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEE----EEEEC
T ss_pred CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCE----EEEec
Confidence 3588999999999854 442111 1123445689999997 76544
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00052 Score=69.21 Aligned_cols=181 Identities=9% Similarity=0.098 Sum_probs=109.7
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cC----CccEEEEecCccccc
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ----SQLEKEFHVPQTVHG 91 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~ 91 (715)
.|..+|+++... ..+. ........+.|++++++|+++... ...|+.+. .+ +....+.. ...
T Consensus 11 ~I~~i~~~~~~~--~~~~-----~~~~~p~g~~~d~~~~~ly~~D~~---~~~I~~~~~~g~~~~~~~~~~~~--~~~-- 76 (316)
T 1ijq_A 11 EVRKMTLDRSEY--TSLI-----PNLRNVVALDTEVASNRIYWSDLS---QRMICSTQLDRAHGVSSYDTVIS--RDI-- 76 (316)
T ss_dssp SEEEEETTSCCC--EEEE-----CSCSSEEEEEEETTTTEEEEEETT---TTEEEEEEC--------CEEEEC--SSC--
T ss_pred eEEEEECCCcce--Eehh-----cCCCceEEEEEEeCCCEEEEEECC---CCcEEEEECCCCCCCcccEEEEe--CCC--
Confidence 466766655432 2221 123567889999999888777442 34677777 33 22233322 111
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 171 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 171 (715)
....++++.+.++.|++.-. ....|.++++++
T Consensus 77 -----~~p~glavd~~~~~ly~~d~-------------------------------------------~~~~I~~~~~~g 108 (316)
T 1ijq_A 77 -----QAPDGLAVDWIHSNIYWTDS-------------------------------------------VLGTVSVADTKG 108 (316)
T ss_dssp -----SCCCEEEEETTTTEEEEEET-------------------------------------------TTTEEEEEETTS
T ss_pred -----CCcCEEEEeecCCeEEEEEC-------------------------------------------CCCEEEEEeCCC
Confidence 01268888888888866421 126789999987
Q ss_pred CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC
Q 005093 172 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 251 (715)
Q Consensus 172 g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (715)
...+.+. ...-.....++..|++.. |+++.+. ....|+++++ ++.
T Consensus 109 ~~~~~~~-~~~~~~P~~iavdp~~g~----ly~~d~~-------------~~~~I~~~~~-----------------dG~ 153 (316)
T 1ijq_A 109 VKRKTLF-RENGSKPRAIVVDPVHGF----MYWTDWG-------------TPAKIKKGGL-----------------NGV 153 (316)
T ss_dssp SSEEEEE-ECTTCCEEEEEEETTTTE----EEEEECS-------------SSCEEEEEET-----------------TSC
T ss_pred CceEEEE-ECCCCCcceEEeCCCCCE----EEEEccC-------------CCCeEEEEcC-----------------CCC
Confidence 7665552 112224567788998876 7766421 1247999996 444
Q ss_pred CceecC-CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCC
Q 005093 252 PVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 304 (715)
Q Consensus 252 ~~~~lt-~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~ 304 (715)
..+.+. ........++|+|++++|+|+.... ..|+++++++..
T Consensus 154 ~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~----------~~I~~~d~dg~~ 197 (316)
T 1ijq_A 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL----------HSISSIDVNGGN 197 (316)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETTT----------TEEEEEETTSCS
T ss_pred CeEEEEECCCCCceEEEEeccCCEEEEEECCC----------CeEEEEecCCCc
Confidence 444443 2334567789999999999887553 469999987643
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.4e-05 Score=76.08 Aligned_cols=174 Identities=11% Similarity=0.044 Sum_probs=107.5
Q ss_pred CCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC
Q 005093 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 250 (715)
Q Consensus 171 ~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (715)
+.+++.+ .........+.|+|||+. |+|+.. ....|++++. +
T Consensus 34 ~~~~~~l--~~~~~~~egp~~~~~g~~----l~~~d~--------------~~~~i~~~~~------------------~ 75 (305)
T 3dr2_A 34 DARLLTL--YDQATWSEGPAWWEAQRT----LVWSDL--------------VGRRVLGWRE------------------D 75 (305)
T ss_dssp TCCCEEE--ECCCSSEEEEEEEGGGTE----EEEEET--------------TTTEEEEEET------------------T
T ss_pred CCceEEE--ecCCcCccCCeEeCCCCE----EEEEEC--------------CCCEEEEEeC------------------C
Confidence 4566666 344445678999999998 888762 2346888884 3
Q ss_pred CCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccc
Q 005093 251 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 330 (715)
Q Consensus 251 ~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~ 330 (715)
++.+.+.........+.+++||+ |+..... ...|++++.+ +..+.+.... ...
T Consensus 76 g~~~~~~~~~~~~~gl~~d~dG~-l~v~~~~----------~~~v~~~~~~-g~~~~~~~~~----------~~~----- 128 (305)
T 3dr2_A 76 GTVDVLLDATAFTNGNAVDAQQR-LVHCEHG----------RRAITRSDAD-GQAHLLVGRY----------AGK----- 128 (305)
T ss_dssp SCEEEEEESCSCEEEEEECTTSC-EEEEETT----------TTEEEEECTT-SCEEEEECEE----------TTE-----
T ss_pred CCEEEEeCCCCccceeeECCCCC-EEEEECC----------CCEEEEECCC-CCEEEEEecc----------CCC-----
Confidence 45555555555677889999998 4444332 1358888865 3332221110 000
Q ss_pred ccCCCCCCccccCCCEEEEEee---------------eCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEE
Q 005093 331 YSSSILSNPWLSDGCTMLLSSI---------------WGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 331 ~~~~~~~~~~~~dg~~l~~~~~---------------~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
-...+..+.+.+||+ ++++.. ..+...||++|+++|+.+.+. .........++++++.|+++.
T Consensus 129 ~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~ 206 (305)
T 3dr2_A 129 RLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQ 206 (305)
T ss_dssp ECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEE
T ss_pred ccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEe
Confidence 011345678899997 767521 012468999999889888776 322223457889998887765
Q ss_pred eCC--CCCCeEEEEeecc
Q 005093 396 SSP--VDVPQVKYGYFVD 411 (715)
Q Consensus 396 ~~~--~~p~~l~~~~~~~ 411 (715)
... .....|+++++..
T Consensus 207 ~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 207 TPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp CCC---CCCEEEEEEEET
T ss_pred cCCcCCCCCEEEEEEecC
Confidence 431 1235788888753
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.002 Score=65.68 Aligned_cols=111 Identities=9% Similarity=-0.022 Sum_probs=57.4
Q ss_pred ccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCcccc
Q 005093 263 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 342 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 342 (715)
...++|||||+.|++..... ..||+++........++.. .+...+.. .| .......+++++
T Consensus 197 ~~gia~s~dg~~ly~~~~~~----------~~l~~~~~~~~~~~~~~~~--~~~~~~~~------~g-~~g~pdgia~d~ 257 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHS----------TSMYRIKSADLSNLQLTDA--ELGSKIER------YS-EKPICDGISIDK 257 (343)
T ss_dssp EEEEEECTTSCEEEEEESSC----------SEEEEEEHHHHTCTTCCHH--HHHTTCEE------EE-ECCSCSCEEECT
T ss_pred cceeEeccCCCEEEEEeCCC----------CeEEEEEHHHhcCCCCChh--hhhcceEe------cc-cCCCCceEEECC
Confidence 45689999999998876542 3688887532110011100 00000000 00 001234677888
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeEEEeecCCEEEEEEe
Q 005093 343 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSS 396 (715)
Q Consensus 343 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~~~~~l~~~~~ 396 (715)
+|+ +|++... ...|.++|.++|+...+..... ......++++ +.++++.+
T Consensus 258 ~G~-l~va~~~--~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~-g~l~v~~~ 309 (343)
T 2qe8_A 258 DHN-IYVGDLA--HSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD-GYLYFDCN 309 (343)
T ss_dssp TCC-EEEEEGG--GTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT-SCEEEEEC
T ss_pred CCC-EEEEccC--CCeEEEEECCCCCEEEEEECCceecCCeeEECCC-CcEEEEeC
Confidence 986 6665432 3589999986677766654321 1122345554 45665554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00029 Score=73.62 Aligned_cols=164 Identities=10% Similarity=0.112 Sum_probs=103.1
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cC----CccEEEEecCccccccccCCCcccceeecCCCCeEEEEee
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ----SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 116 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~ 116 (715)
+......+|++.+..|+++... ...|+.+. .+ +....+... ... ...++++.+.++.|++. +
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~---~~~I~~~~~~g~~~~~~~~~~~~~--~~~-------~p~glavD~~~~~lY~~-d 177 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLS---QRMICSTQLDRAHGVSSYDTVISR--DIQ-------APDGLAVDWIHSNIYWT-D 177 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETT---TTEEEEEEC------CCCEEEECS--SCS-------CEEEEEEETTTTEEEEE-E
T ss_pred cCcceEEeeeeccCceEEEecC---CCeEEEEEcccCCCCCcceEEEeC--CCC-------CcccEEEEecCCceEEE-E
Confidence 3567888999988888776432 23577666 33 122333321 110 11577888877777664 2
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCC
Q 005093 117 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~ 196 (715)
. ....|.++++++...+.+. ...-.....++..|.+.
T Consensus 178 ~------------------------------------------~~~~I~~~~~~g~~~~~l~-~~~~~~P~~iavdp~~g 214 (400)
T 3p5b_L 178 S------------------------------------------VLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHG 214 (400)
T ss_dssp T------------------------------------------TTTEEEEECTTTCSEEEEE-ECSSCCEEEEEEETTTT
T ss_pred C------------------------------------------CCCeEEEEeCCCCceEEEE-eCCCCCcceEEEecccC
Confidence 1 1267899999887766652 11222356778899877
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecC-CCCccccceeEcCCCCeE
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFL 275 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~~~~spdg~~l 275 (715)
. |+++.+. ....|+++++ ++...+.+. ........++++|++++|
T Consensus 215 ~----ly~td~~-------------~~~~I~~~~~-----------------dG~~~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 215 F----MYWTDWG-------------TPAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp E----EEEEECS-------------SSCCEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred e----EEEEeCC-------------CCCEEEEEeC-----------------CCCccEEEEECCCCceEEEEEEeCCCEE
Confidence 6 7776431 1247999997 555554443 333457789999999999
Q ss_pred EEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 276 VFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
+|+.... ..|+++++++...
T Consensus 261 Y~aD~~~----------~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 261 YWVDSKL----------HSISSIDVNGGNR 280 (400)
T ss_dssp EEEETTT----------TEEEEEETTSCCC
T ss_pred EEEECCC----------CEEEEEeCCCCcc
Confidence 9987543 4699999876443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00025 Score=68.59 Aligned_cols=206 Identities=9% Similarity=-0.013 Sum_probs=116.5
Q ss_pred eEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 46 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
....++||| + +|+++...+...+..++ .+|+..+.+.++... ....++++|++|+.....
T Consensus 24 ~Gl~~~~dg-~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~----------fgeGi~~~g~~lyv~t~~------- 84 (266)
T 2iwa_A 24 QGLVYAEND-T-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSY----------FGEGLTLLNEKLYQVVWL------- 84 (266)
T ss_dssp EEEEECSTT-E-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTC----------CEEEEEEETTEEEEEETT-------
T ss_pred ccEEEeCCC-e-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCc----------ceEEEEEeCCEEEEEEec-------
Confidence 456889996 4 56655322566888899 778877766654433 233455567777765331
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEE
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 204 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~ 204 (715)
...++++|.++.++..- .+.. .......++||++ ++.
T Consensus 85 ------------------------------------~~~v~viD~~t~~v~~~--i~~g-~~~g~glt~Dg~~----l~v 121 (266)
T 2iwa_A 85 ------------------------------------KNIGFIYDRRTLSNIKN--FTHQ-MKDGWGLATDGKI----LYG 121 (266)
T ss_dssp ------------------------------------CSEEEEEETTTTEEEEE--EECC-SSSCCEEEECSSS----EEE
T ss_pred ------------------------------------CCEEEEEECCCCcEEEE--EECC-CCCeEEEEECCCE----EEE
Confidence 27799999998876543 1111 1234568899998 665
Q ss_pred EeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCCC--c---cccceeEcCCCCeEEEE
Q 005093 205 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESI--S---SAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 205 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~--~---~~~~~~~spdg~~l~~~ 278 (715)
+ + ....|+.+|. ++.+. ..+.-.. . ......|. || +| |+
T Consensus 122 s-~--------------gs~~l~viD~-----------------~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~l-yv 166 (266)
T 2iwa_A 122 S-D--------------GTSILYEIDP-----------------HTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EV-WA 166 (266)
T ss_dssp E-C--------------SSSEEEEECT-----------------TTCCEEEEEECEETTEECCCEEEEEEE-TT-EE-EE
T ss_pred E-C--------------CCCeEEEEEC-----------------CCCcEEEEEEECCCCcccccceeEEEE-CC-EE-EE
Confidence 4 2 1237999996 55443 3333211 1 23455677 66 45 44
Q ss_pred ecCCCCCCCCccccceeEeeecCCCCCC-CcccceeeeeeceecC-CCCCccccccCCCCCCccccCCCEEEEEeeeCCe
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCA-EGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 356 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~ 356 (715)
.... ..+|.++|..+++.. .+... .+.... ... .+ -......++|+++++++|++.. ..
T Consensus 167 n~~~---------~~~V~vID~~tg~V~~~I~~~-----g~~~~~~~~~-~~--~~~v~nGIa~~~~~~~lfVTgk--~~ 227 (266)
T 2iwa_A 167 NIWQ---------TDCIARISAKDGTLLGWILLP-----NLRKKLIDEG-FR--DIDVLNGIAWDQENKRIFVTGK--LW 227 (266)
T ss_dssp EETT---------SSEEEEEETTTCCEEEEEECH-----HHHHHHHHTT-CT--TCCCEEEEEEETTTTEEEEEET--TC
T ss_pred ecCC---------CCeEEEEECCCCcEEEEEECC-----Cccccccccc-cc--ccCceEEEEEcCCCCEEEEECC--CC
Confidence 4332 247999999887652 11100 000000 000 00 0012346789999998877653 44
Q ss_pred eEEEEEECCCC
Q 005093 357 QVIISVNVSSG 367 (715)
Q Consensus 357 ~~l~~~d~~tg 367 (715)
..|+.+++.+.
T Consensus 228 ~~v~~i~l~~~ 238 (266)
T 2iwa_A 228 PKLFEIKLHLV 238 (266)
T ss_dssp SEEEEEEEEEC
T ss_pred CeEEEEEEecc
Confidence 68888887543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00019 Score=76.74 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=57.6
Q ss_pred eEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCE
Q 005093 267 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 346 (715)
Q Consensus 267 ~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~ 346 (715)
.++++|+.|+..+.+. .|.++|+.+++....... +...+..+.|+++++.
T Consensus 275 ~~~~~~~~l~~~~~d~-----------~i~vwd~~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 275 TVSGHGNIVVSGSYDN-----------TLIVWDVAQMKCLYILSG-------------------HTDRIYSTIYDHERKR 324 (464)
T ss_dssp EEEEETTEEEEEETTS-----------CEEEEETTTTEEEEEECC-------------------CSSCEEEEEEETTTTE
T ss_pred EEcCCCCEEEEEeCCC-----------eEEEEECCCCcEEEEecC-------------------CCCCEEEEEEcCCCCE
Confidence 4578899887776553 488888876443111000 1113456779999986
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 347 MLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 347 l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
++ +...++ .|..+|+.+++......... .....++.+++.++....+ ..|.+.++.
T Consensus 325 l~-sg~~dg--~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~l~s~s~d----g~v~vwd~~ 380 (464)
T 3v7d_B 325 CI-SASMDT--TIRIWDLENGELMYTLQGHT-ALVGLLRLSDKFLVSAAAD----GSIRGWDAN 380 (464)
T ss_dssp EE-EEETTS--CEEEEETTTTEEEEEECCCS-SCEEEEEECSSEEEEEETT----SEEEEEETT
T ss_pred EE-EEeCCC--cEEEEECCCCcEEEEEeCCC-CcEEEEEEcCCEEEEEeCC----CcEEEEECC
Confidence 54 444444 46667888887665443322 1223344445544433321 235555554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00038 Score=73.00 Aligned_cols=158 Identities=11% Similarity=0.184 Sum_probs=90.7
Q ss_pred EeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEE-ecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCc
Q 005093 48 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 125 (715)
Q Consensus 48 ~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 125 (715)
++|+|+|+.|+..... +...++.+. .++...+.. ...... ......++++|++.+|++ +..
T Consensus 176 ia~~~~g~~l~~~d~~--~~~~I~~~d~~~~~~~~~~g~~~~~~------~~~p~~iav~p~~g~lyv-~d~-------- 238 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWE--GTHTVYVYMKASGWAPTRIGQLGSTF------SGKIGAVALDETEEWLYF-VDS-------- 238 (409)
T ss_dssp CEECTTSSEEEEEBSS--TTCEEEEEEGGGTTCEEEEEECCTTS------CSCCCBCEECTTSSEEEE-ECT--------
T ss_pred eeEecCCCcEEEEecC--CCceEEEEEcCCCceeEEeeeccchh------cCCcEEEEEeCCCCeEEE-EEC--------
Confidence 8999999987655432 222677777 444332222 111101 012368999997777877 221
Q ss_pred cCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecC--CCCCCcc--c-eEEEecCCCCCcc
Q 005093 126 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG--IPKSLSV--G-QVVWAPLNEGLHQ 200 (715)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~--~~~~~~~--~-~~~~spdg~~~~~ 200 (715)
...|+++|++++....+.+ ....... . .++|+|++..
T Consensus 239 -----------------------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~--- 280 (409)
T 3hrp_A 239 -----------------------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN--- 280 (409)
T ss_dssp -----------------------------------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE---
T ss_pred -----------------------------------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE---
Confidence 1569999998887655410 1111111 2 8899997765
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCC---------------Cccccc
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---------------ISSAFF 265 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~---------------~~~~~~ 265 (715)
|+++. . ....|++++. .+ ....+... ......
T Consensus 281 -lyv~d-~-------------~~~~I~~~~~-----------------~g-~~~~~~g~~~~~g~~dg~~~~~~~~~P~g 327 (409)
T 3hrp_A 281 -FYMSD-Q-------------NLSSVYKITP-----------------DG-ECEWFCGSATQKTVQDGLREEALFAQPNG 327 (409)
T ss_dssp -EEEEE-T-------------TTTEEEEECT-----------------TC-CEEEEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred -EEEEe-C-------------CCCEEEEEec-----------------CC-CEEEEEeCCCCCCcCCCcccccEeCCCeE
Confidence 66553 1 2346888885 22 22222211 123567
Q ss_pred eeEcCCCCeEEEEec-CCCCCCCCccccceeEeeecCCCC
Q 005093 266 PRFSPDGKFLVFLSA-KSSVDSGAHSATDSLHRIDWPTNG 304 (715)
Q Consensus 266 ~~~spdg~~l~~~~~-~~~~~~g~~~~~~~l~~~~~~~~~ 304 (715)
.+++|||+ |+++.. . ...|+++++.++.
T Consensus 328 ia~d~dG~-lyvad~~~----------~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 328 MTVDEDGN-FYIVDGFK----------GYCLRKLDILDGY 356 (409)
T ss_dssp EEECTTCC-EEEEETTT----------TCEEEEEETTTTE
T ss_pred EEEeCCCC-EEEEeCCC----------CCEEEEEECCCCE
Confidence 88999998 666654 3 2468888866554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0013 Score=66.20 Aligned_cols=180 Identities=11% Similarity=0.003 Sum_probs=109.9
Q ss_pred ceEEEEEccCCce--EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 162 PSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 162 ~~l~~~~~~~g~~--~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
..|++++++++.. ..+ ...-.....+++.+.+.. |+++.. ....|.++++
T Consensus 57 ~~I~r~~~~g~~~~~~~~--~~~l~~p~glavd~~~g~----ly~~d~--------------~~~~I~~~~~-------- 108 (318)
T 3sov_A 57 EAIKRTEFNKTESVQNVV--VSGLLSPDGLACDWLGEK----LYWTDS--------------ETNRIEVSNL-------- 108 (318)
T ss_dssp TEEEEEETTSSSCCCEEE--EECCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET--------
T ss_pred CcEEEEEccCCCceEEEE--cCCCCCccEEEEEcCCCe----EEEEEC--------------CCCEEEEEEC--------
Confidence 6789999987742 222 111123456788887776 776642 2247999997
Q ss_pred hhhhhccCCCCCCceecC-CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeec
Q 005093 240 ELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 318 (715)
Q Consensus 240 ~~~~~~~~~~~~~~~~lt-~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~ 318 (715)
++...+.+. .........++.|++..|+|+.... ...|+++++++...+.+...
T Consensus 109 ---------dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~------- 163 (318)
T 3sov_A 109 ---------DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE---------VPKIERAGMDGSSRFIIINS------- 163 (318)
T ss_dssp ---------TSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSS---------SCEEEEEETTSCSCEEEECS-------
T ss_pred ---------CCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCC---------CCEEEEEEcCCCCeEEEEEC-------
Confidence 555544443 3334567788999888898876432 24699999876443222110
Q ss_pred eecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCC
Q 005093 319 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 398 (715)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~ 398 (715)
+.. .+..+++++++..||++-. ....|+++|++++..+.+..... ..-..++.+++.+|.+..
T Consensus 164 -----~l~-------~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~-~~P~glav~~~~lywtd~-- 226 (318)
T 3sov_A 164 -----EIY-------WPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSL-PHPFALTLFEDILYWTDW-- 226 (318)
T ss_dssp -----SCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSCC-SCEEEEEEETTEEEEEET--
T ss_pred -----CCC-------CccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecCCC-CCceEEEEeCCEEEEEec--
Confidence 000 2346778888888888643 45689999998766666654222 122345567778877642
Q ss_pred CCCCeEEEEeeccc
Q 005093 399 VDVPQVKYGYFVDK 412 (715)
Q Consensus 399 ~~p~~l~~~~~~~~ 412 (715)
....|++++..++
T Consensus 227 -~~~~V~~~~~~~G 239 (318)
T 3sov_A 227 -STHSILACNKYTG 239 (318)
T ss_dssp -TTTEEEEEETTTC
T ss_pred -CCCeEEEEECCCC
Confidence 3446888876444
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00055 Score=68.45 Aligned_cols=41 Identities=10% Similarity=-0.081 Sum_probs=27.2
Q ss_pred ceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCCcc-ccceeEcCCCCeEEEEecC
Q 005093 224 CALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISS-AFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~-~~~~~~spdg~~l~~~~~~ 281 (715)
..|.+.|+ .+++ ...|..+... ....+|||||++|+-.+.+
T Consensus 305 gTIkIWDl-----------------~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D 347 (356)
T 2w18_A 305 GTIAIWDL-----------------LLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKD 347 (356)
T ss_dssp SCEEEEET-----------------TTCSEEEEECCC--CCCCEEEECSSSSEEEEECTT
T ss_pred CcEEEEEC-----------------CCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECC
Confidence 36888887 5555 4456555443 3458999999999866654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0013 Score=64.69 Aligned_cols=180 Identities=12% Similarity=0.111 Sum_probs=96.6
Q ss_pred CeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCC
Q 005093 68 PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 146 (715)
Q Consensus 68 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (715)
..++.++ ++|+..+.+...... ....+.++|||+.|+ . .
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~--------~~~~~~~~pdG~ilv-s-~------------------------------ 54 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGW--------ECNSVAATKAGEILF-S-Y------------------------------ 54 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTC--------CCCEEEECTTSCEEE-E-C------------------------------
T ss_pred CEEEEEECCCCeEEEEeCCCccC--------CCcCeEECCCCCEEE-e-C------------------------------
Confidence 4666666 477776665543210 126889999998555 2 1
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceE
Q 005093 147 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 226 (715)
Q Consensus 147 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i 226 (715)
...|+.+|+++..+..+. .........+.++|||+. ++-... .+..|
T Consensus 55 --------------~~~V~~~d~~G~~~W~~~-~~~~~~~~~~~~~~dG~~----lv~~~~--------------~~~~v 101 (276)
T 3no2_A 55 --------------SKGAKMITRDGRELWNIA-APAGCEMQTARILPDGNA----LVAWCG--------------HPSTI 101 (276)
T ss_dssp --------------BSEEEEECTTSCEEEEEE-CCTTCEEEEEEECTTSCE----EEEEES--------------TTEEE
T ss_pred --------------CCCEEEECCCCCEEEEEc-CCCCccccccEECCCCCE----EEEecC--------------CCCEE
Confidence 145888888444445552 222234567789999985 444331 02245
Q ss_pred EEEecccccchhhhhhhhccCCCCCCceecC------CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeec
Q 005093 227 YAVRVSLYKSEASELELKESSSEDLPVVNLT------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 300 (715)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt------~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~ 300 (715)
+.+|. ++.....+. ..........+++||+.|+..... ..|+.+|.
T Consensus 102 ~~vd~-----------------~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~-----------~~v~~~d~ 153 (276)
T 3no2_A 102 LEVNM-----------------KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT-----------SEVREIAP 153 (276)
T ss_dssp EEECT-----------------TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT-----------TEEEEECT
T ss_pred EEEeC-----------------CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCC-----------CEEEEECC
Confidence 55553 222222211 111123455788999977543322 35888887
Q ss_pred CCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 005093 301 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 372 (715)
Q Consensus 301 ~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 372 (715)
. ++...- .... ..+......++|+.+ +..... .+|+.+|+++|+...-
T Consensus 154 ~-G~~~w~------------~~~~--------~~~~~~~~~~~g~~~-v~~~~~--~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 154 N-GQLLNS------------VKLS--------GTPFSSAFLDNGDCL-VACGDA--HCFVQLNLESNRIVRR 201 (276)
T ss_dssp T-SCEEEE------------EECS--------SCCCEEEECTTSCEE-EECBTT--SEEEEECTTTCCEEEE
T ss_pred C-CCEEEE------------EECC--------CCccceeEcCCCCEE-EEeCCC--CeEEEEeCcCCcEEEE
Confidence 6 443110 0000 012233456788744 443332 4699999998887544
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5.1e-05 Score=80.68 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=77.5
Q ss_pred CCCcEEEEEcCCCCCCCCc--cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhh----c----CCCCCCccchhhHHHHH
Q 005093 479 SCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ----S----LPGKVGSQDVNDVLTAI 548 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~--~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~----~----~~~~~~~~~~~d~~~~i 548 (715)
+..|++|++-| -+..... .-..+.+...+.|-.++.+.+|- ||.+..- . +..-...+.+.|++.++
T Consensus 41 ~~gPIfl~~gG-Eg~~~~~~~~~g~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~st~~~nL~yLt~eQALaD~a~fi 116 (472)
T 4ebb_A 41 GEGPIFFYTGN-EGDVWAFANNSAFVAELAAERGALLVFAEHRY---YGKSLPFGAQSTQRGHTELLTVEQALADFAELL 116 (472)
T ss_dssp TTCCEEEEECC-SSCHHHHHHHCHHHHHHHHHHTCEEEEECCTT---STTCCTTGGGGGSTTSCTTCSHHHHHHHHHHHH
T ss_pred CCCcEEEEECC-CccccccccCccHHHHHHHHhCCeEEEEeccc---ccCCcCCCCCCccccccccCCHHHHHHHHHHHH
Confidence 34788888754 2221100 01112344567899999999997 6665421 0 11112234478888888
Q ss_pred HHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 549 DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 549 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
.++.........+++++|.|+||.+|+++-.++|+++.++++.|+++
T Consensus 117 ~~~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSApv 163 (472)
T 4ebb_A 117 RALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPV 163 (472)
T ss_dssp HHHHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCCT
T ss_pred HHHHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccce
Confidence 88887755566799999999999999999999999999988877654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.92 E-value=9.8e-05 Score=83.07 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=87.4
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|+++++++...+.+. ...-.....+++.|++.. |+++.+. ....|+++++
T Consensus 475 ~~I~v~d~dg~~~~~l~-~~~~~~P~giavDp~~g~----ly~td~~-------------~~~~I~~~~~---------- 526 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLF-REQGSKPRAIVVDPVHGF----MYWTDWG-------------TPAKIKKGGL---------- 526 (699)
T ss_dssp SCEEEEBSSSCCEEEEC-CCSSCCCCCEECCSSSSC----CEECCCS-------------SSCCEEBCCS----------
T ss_pred CeEEEEecCCCceEEEE-eCCCCCcceEEEccCCCc----EEEcccC-------------CCCeEEEEeC----------
Confidence 66899999887766662 112234567889998887 7765421 1236888886
Q ss_pred hhhccCCCCCCceecC-CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 242 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt-~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
.+...+.+. ........++|+|++++|+|+.... ..|+++++.+...+.+....
T Consensus 527 -------dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~----------~~I~~~d~dG~~~~~~~~~~-------- 581 (699)
T 1n7d_A 527 -------NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL----------HSISSIDVNGGNRKTILEDE-------- 581 (699)
T ss_dssp -------SSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTT----------TEEEEECSSSSCCEEECCCS--------
T ss_pred -------CCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCC----------CeEEEEccCCCceEEEEecC--------
Confidence 444443333 3334567799999999999887543 46999998764332221100
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
..++ .+..+.+ +++.||++. ....+|+++|..+|+.....
T Consensus 582 ----~~~~-----~P~glav--d~~~lywtd--~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 582 ----KRLA-----HPFSLAV--FEDKVFWTD--IINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp ----SSCS-----SCCCCEE--ETTEEEEEC--STTTCEEEEETTTEEEEECC
T ss_pred ----CcCC-----CceEeEE--ECCEEEEEe--CCCCeEEEEEccCCCceEEe
Confidence 0000 1223333 445677655 23457888888777766544
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00095 Score=67.44 Aligned_cols=194 Identities=11% Similarity=-0.021 Sum_probs=99.6
Q ss_pred eEEEEEccCCceEeecCCCCC---CccceEEEec-CCCCCccEEEEEeecCccceeeee---eeecCCceEEEEeccccc
Q 005093 163 SLFVININSGEVQAVKGIPKS---LSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIK---YCYNRPCALYAVRVSLYK 235 (715)
Q Consensus 163 ~l~~~~~~~g~~~~l~~~~~~---~~~~~~~~sp-dg~~~~~~i~~~~~~~~~~~~g~~---~~~~~~~~i~~~~~~~~~ 235 (715)
.|+++|+++++.+.+...... .....+.+.| ||+ |+++.....-....+. ........|+++|.
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-----l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~---- 172 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-----VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP---- 172 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-----EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET----
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-----EEEECCcccccccccceehcccCCCceEEEEeC----
Confidence 377788777765554211111 1245678899 885 6665421100000000 00012246999995
Q ss_pred chhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeee
Q 005093 236 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 315 (715)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~ 315 (715)
.+++.+.+.........++|+|||+.|+++... ...|+++++.+..... ....
T Consensus 173 -------------~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~----------~~~I~~~~~~~~~~~~----~~~~ 225 (322)
T 2fp8_A 173 -------------STKETTLLLKELHVPGGAEVSADSSFVLVAEFL----------SHQIVKYWLEGPKKGT----AEVL 225 (322)
T ss_dssp -------------TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG----------GTEEEEEESSSTTTTC----EEEE
T ss_pred -------------CCCEEEEeccCCccCcceEECCCCCEEEEEeCC----------CCeEEEEECCCCcCCc----cceE
Confidence 556555443322345668999999988776543 2468999987532111 0000
Q ss_pred eeceecCCCCCccccccCCCCCCccccCCCEEEEEeee--------CCeeEEEEEECCCCcEEEecCCCCC-ce-eEEEe
Q 005093 316 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--------GSSQVIISVNVSSGELLRITPAESN-FS-WSLLT 385 (715)
Q Consensus 316 ~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~--------~~~~~l~~~d~~tg~~~~l~~~~~~-~~-~~~~s 385 (715)
.. .+ ++..++..++|+ |+++... .....|+++|.++.....+....+. +. ...+.
T Consensus 226 ~~---------~~-----gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~ 290 (322)
T 2fp8_A 226 VK---------IP-----NPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQ 290 (322)
T ss_dssp EE---------CS-----SEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEE
T ss_pred Ee---------CC-----CCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEE
Confidence 00 00 023456778887 6665543 2246799999864444455433321 11 12233
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 386 LDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 386 ~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
..++.|++... ....|.++++.
T Consensus 291 ~~~g~L~v~~~---~~~~i~~~~~~ 312 (322)
T 2fp8_A 291 EHDGLLYIGTL---FHGSVGILVYD 312 (322)
T ss_dssp EETTEEEEECS---SCSEEEEEEC-
T ss_pred EeCCEEEEeec---CCCceEEEecc
Confidence 35667776542 33457777764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0072 Score=59.50 Aligned_cols=175 Identities=6% Similarity=-0.040 Sum_probs=93.1
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|++++.++.....+. .........++++|||+ ++++.. ....|+++|.
T Consensus 100 ~~i~~~d~~g~~~~~~~-~~~~~~~~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 149 (286)
T 1q7f_A 100 HQIQIYNQYGQFVRKFG-ATILQHPRGVTVDNKGR-----IIVVEC--------------KVMRVIIFDQ---------- 149 (286)
T ss_dssp CEEEEECTTSCEEEEEC-TTTCSCEEEEEECTTSC-----EEEEET--------------TTTEEEEECT----------
T ss_pred CEEEEECCCCcEEEEec-CccCCCceEEEEeCCCC-----EEEEEC--------------CCCEEEEEcC----------
Confidence 56888986555444452 22223456788999985 555431 2236888884
Q ss_pred hhhccCCCCCCceecC--CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 242 ELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt--~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
.+.....+. ........++++|||+ |+++... ...|++++..+.....+..
T Consensus 150 -------~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----------~~~i~~~~~~g~~~~~~~~--------- 202 (286)
T 1q7f_A 150 -------NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR----------AHCVKVFNYEGQYLRQIGG--------- 202 (286)
T ss_dssp -------TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG----------GTEEEEEETTCCEEEEESC---------
T ss_pred -------CCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECC----------CCEEEEEcCCCCEEEEEcc---------
Confidence 433333332 1223467789999997 5444432 2358888865422111110
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCC--ceeEEEeecCCEEEEEEeC
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN--FSWSLLTLDGDNIIAVSSS 397 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~--~~~~~~s~~~~~l~~~~~~ 397 (715)
.+.+ ..+..++++++|+ ++++.... ...|..+|.++.....+...... .....++++| .++++ +.
T Consensus 203 ----~g~~-----~~p~~i~~d~~G~-l~v~~~~~-~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~ 269 (286)
T 1q7f_A 203 ----EGIT-----NYPIGVGINSNGE-ILIADNHN-NFNLTIFTQDGQLISALESKVKHAQCFDVALMDDG-SVVLA-SK 269 (286)
T ss_dssp ----TTTS-----CSEEEEEECTTCC-EEEEECSS-SCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTT-EEEEE-ET
T ss_pred ----CCcc-----CCCcEEEECCCCC-EEEEeCCC-CEEEEEECCCCCEEEEEcccCCCCcceeEEECCCC-cEEEE-CC
Confidence 0000 0234567888986 65554322 23788888765555555433221 2234566665 56555 32
Q ss_pred CCCCCeEEEEee
Q 005093 398 PVDVPQVKYGYF 409 (715)
Q Consensus 398 ~~~p~~l~~~~~ 409 (715)
+ ..|.+.+.
T Consensus 270 -~--~~v~v~~~ 278 (286)
T 1q7f_A 270 -D--YRLYIYRY 278 (286)
T ss_dssp -T--TEEEEEEC
T ss_pred -C--CeEEEEEc
Confidence 2 45666554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0032 Score=71.23 Aligned_cols=182 Identities=8% Similarity=-0.060 Sum_probs=108.9
Q ss_pred ceEEEEEccCC----ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 162 PSLFVININSG----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 162 ~~l~~~~~~~g----~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
..|+++++++. ..+.+. ...-.....+++.+.++. |+++-. ....|+++++
T Consensus 446 ~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~~~----LY~tD~--------------~~~~I~v~~l------ 500 (791)
T 3m0c_C 446 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 500 (791)
T ss_dssp TEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET------
T ss_pred eeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecCCc----EEEEec--------------CCCeEEEEeC------
Confidence 56888888763 333331 112234557888888887 777642 2347999997
Q ss_pred hhhhhhhccCCCCCCceecCC-CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeee
Q 005093 238 ASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 316 (715)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~lt~-~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~ 316 (715)
++...+.|.. .......+++.|.+.+|+|+.... ...|+++++++...+.+....
T Consensus 501 -----------dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~---------~~~I~~~~~dG~~~~~lv~~~---- 556 (791)
T 3m0c_C 501 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTEN---- 556 (791)
T ss_dssp -----------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCCEEEEECSS----
T ss_pred -----------CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC---------CCeEEEEecCCCceEEEEeCC----
Confidence 5555555543 333467889999988899887432 146999998765432221100
Q ss_pred eceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeEEEeecCCEEEEEE
Q 005093 317 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 317 ~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~~~~~l~~~~ 395 (715)
.. .+..++..+.+..||++- .....|+++++++...+.+..... ......++..+++||++-
T Consensus 557 --------l~-------~P~GLavD~~~~~LYwaD--~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD 619 (791)
T 3m0c_C 557 --------IQ-------WPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 619 (791)
T ss_dssp --------CS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred --------CC-------CceEEEEecCCCeEEEEe--CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEE
Confidence 00 123455666677788863 345689999998777776654422 112245666777887765
Q ss_pred eCCCCCCeEEEEeeccc
Q 005093 396 SSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 396 ~~~~~p~~l~~~~~~~~ 412 (715)
. ....|++++..++
T Consensus 620 ~---~~~~I~~~dk~tG 633 (791)
T 3m0c_C 620 I---INEAIFSANRLTG 633 (791)
T ss_dssp T---TTTEEEEEETTTC
T ss_pred C---CCCEEEEEeCCCC
Confidence 3 3355777764444
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0024 Score=67.75 Aligned_cols=69 Identities=9% Similarity=-0.032 Sum_probs=37.4
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec------CCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 337 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT------PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 337 ~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~------~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
.+.| +++ ++++...++ .|..+|+.+++..... ...+.+....|++++..++....+...+..|++.++.
T Consensus 367 ~~~~--~~~-~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 367 CLQF--NKN-FVITSSDDG--TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEE--CSS-EEEEEETTS--EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred EEEE--CCC-EEEEEeCCC--eEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 3445 455 445555444 5666688888765433 1222233345666654444444444446778887765
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0015 Score=73.98 Aligned_cols=163 Identities=9% Similarity=0.084 Sum_probs=103.0
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCC-----ccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
.....+++++.+.+|+++... ...|+.+...| ....++.. .. ....++++.+.+++|++. +.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~---~~~I~~~~l~g~~~~~~~~~vi~~--~l-------~~P~GLAvD~~~~~LY~t-D~ 490 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLS---QRMICSTQLDRAHGVSSYDTVISR--DI-------QAPDGLAVDWIHSNIYWT-DS 490 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETT---TTEEEEEEC--------CEEEECS--SC-------SCCCEEEEETTTTEEEEE-ET
T ss_pred CceEEEeecccCCeeEEeecc---ceeEEEEeccCCCCCcceeEEEec--CC-------CCcceeeeeecCCcEEEE-ec
Confidence 556778888888887666432 33577666322 22333321 11 112688888888888764 21
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
....|+++++++...+.+. ...-.....++..|.+..
T Consensus 491 ------------------------------------------~~~~I~v~~ldG~~~~~l~-~~~l~~P~gIaVDp~~g~ 527 (791)
T 3m0c_C 491 ------------------------------------------VLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGF 527 (791)
T ss_dssp ------------------------------------------TTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTTTE
T ss_pred ------------------------------------------CCCeEEEEeCCCCeEEEEE-eCCCCCcceEEEecCCCC
Confidence 2367999999988776662 112224567888998776
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC-CCccccceeEcCCCCeEE
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~~~~spdg~~l~ 276 (715)
|+++-+. ....|+++++ ++...+.+.. .......+++++++++|+
T Consensus 528 ----LYwtD~g-------------~~~~I~~~~~-----------------dG~~~~~lv~~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 528 ----MYWTDWG-------------TPAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp ----EEEEECS-------------SSCEEEEEET-----------------TSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred ----EEEecCC-------------CCCeEEEEec-----------------CCCceEEEEeCCCCCceEEEEecCCCeEE
Confidence 7776531 1247999997 5555544443 334577789999999999
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
|+.... ..|+++++.+...
T Consensus 574 waD~~~----------~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 574 WVDSKL----------HSISSIDVNGGNR 592 (791)
T ss_dssp EEETTT----------TEEEEEETTSCSC
T ss_pred EEeCCC----------CcEEEEecCCCce
Confidence 986542 4699999877544
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00019 Score=80.75 Aligned_cols=182 Identities=8% Similarity=-0.055 Sum_probs=104.8
Q ss_pred ceEEEEEccC----CceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 162 PSLFVININS----GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 162 ~~l~~~~~~~----g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
..|+++++++ .....+. ...-.....+++.+.+.. |+++.. ....|+++++
T Consensus 428 ~~I~~~~~~g~~~~~~~~~~i-~~~~~~P~glavD~~~g~----LY~tD~--------------~~~~I~v~d~------ 482 (699)
T 1n7d_A 428 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 482 (699)
T ss_dssp TSBEEEESCCCCC-CCCCCBC-CSCC--CCCEECCCSSSB----CEECCT--------------TTSCEEEEBS------
T ss_pred CeEEEEecCCCCCCcceEEEE-eCCCCCcceEEEEeeCCc----EEEEec--------------cCCeEEEEec------
Confidence 5688888875 2322221 111123445677766666 665431 2246889986
Q ss_pred hhhhhhhccCCCCCCceecCCC-CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeee
Q 005093 238 ASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 316 (715)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~lt~~-~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~ 316 (715)
.+...+.+... ......++++|++.+|+|+.... ...|+++++++...+.+...
T Consensus 483 -----------dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~---------~~~I~~~~~dG~~~~~l~~~----- 537 (699)
T 1n7d_A 483 -----------KGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTE----- 537 (699)
T ss_dssp -----------SSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS---------SCCEEBCCSSSCCCCEESCS-----
T ss_pred -----------CCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC---------CCeEEEEeCCCCCeeEEEeC-----
Confidence 55555555433 33467789999988888776432 14588888776443222110
Q ss_pred eceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeEEEeecCCEEEEEE
Q 005093 317 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 317 ~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~~~~~l~~~~ 395 (715)
.. ..+..++|++++..||++-. ...+|+++++++...+.+..... ......++.+++.||++.
T Consensus 538 -------~l-------~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd 601 (699)
T 1n7d_A 538 -------NI-------QWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 601 (699)
T ss_dssp -------SC-------SSCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEEC
T ss_pred -------CC-------CCccEEEEeccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEe
Confidence 00 02457789988888888653 45689999997666666554221 111224555677777665
Q ss_pred eCCCCCCeEEEEeeccc
Q 005093 396 SSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 396 ~~~~~p~~l~~~~~~~~ 412 (715)
. ....|.+++..++
T Consensus 602 ~---~~~~V~~~d~~~G 615 (699)
T 1n7d_A 602 I---INEAIFSANRLTG 615 (699)
T ss_dssp S---TTTCEEEEETTTE
T ss_pred C---CCCeEEEEEccCC
Confidence 2 3346888775443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0011 Score=63.30 Aligned_cols=177 Identities=14% Similarity=0.189 Sum_probs=100.5
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|.++|+++|++..-...+. .....-.+++|++ |+...|. ...++++|.
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~----ly~ltw~--------------~~~v~v~D~---------- 114 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDK----IVGLTWK--------------NGLGFVWNI---------- 114 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTE----EEEEESS--------------SSEEEEEET----------
T ss_pred ceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCE----EEEEEee--------------CCEEEEEEC----------
Confidence 689999999998765411222 2222335667887 7666542 247999997
Q ss_pred hhhccCCCCCCc-eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 242 ELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 242 ~~~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
++.+. .++.-+ . ..-..++||++|+ .++.+ ..|+++|..+.+... .+++-.
T Consensus 115 -------~t~~~~~ti~~~-~--eG~glt~dg~~L~-~SdGs----------~~i~~iDp~T~~v~~-------~I~V~~ 166 (262)
T 3nol_A 115 -------RNLRQVRSFNYD-G--EGWGLTHNDQYLI-MSDGT----------PVLRFLDPESLTPVR-------TITVTA 166 (262)
T ss_dssp -------TTCCEEEEEECS-S--CCCCEEECSSCEE-ECCSS----------SEEEEECTTTCSEEE-------EEECEE
T ss_pred -------ccCcEEEEEECC-C--CceEEecCCCEEE-EECCC----------CeEEEEcCCCCeEEE-------EEEecc
Confidence 55443 333322 1 2234567898775 44332 359999987754310 011100
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-------------CceeEEEeec
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-------------NFSWSLLTLD 387 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-------------~~~~~~~s~~ 387 (715)
....+ ..+..+.|. ||+ ||... +. ...|.++|+++|++.......+ ......++++
T Consensus 167 --~g~~~-----~~lNELe~~-~G~-lyan~-w~-~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~ 235 (262)
T 3nol_A 167 --HGEEL-----PELNELEWV-DGE-IFANV-WQ-TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE 235 (262)
T ss_dssp --TTEEC-----CCEEEEEEE-TTE-EEEEE-TT-SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred --CCccc-----cccceeEEE-CCE-EEEEE-cc-CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence 00000 011234565 664 66443 32 3589999999999876543321 1233577888
Q ss_pred CCEEEEEEeCCCCCCeEEEEeec
Q 005093 388 GDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 388 ~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
+++|+++.-.. |.+|.+.+.
T Consensus 236 ~~~lfVTGK~W---p~~~ev~~~ 255 (262)
T 3nol_A 236 HHRLFVTGKLW---PKVFEITLT 255 (262)
T ss_dssp TTEEEEEETTC---SEEEEEEEE
T ss_pred CCEEEEECCCC---CceEEEEEe
Confidence 88888877555 557766654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0025 Score=62.11 Aligned_cols=174 Identities=5% Similarity=-0.053 Sum_probs=92.2
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|++++.+++....+. .........++++|||+ |++... ...|+++|.
T Consensus 46 ~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----l~v~~~---------------~~~i~~~d~---------- 94 (270)
T 1rwi_B 46 GRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGAGT-----VYVTDF---------------NNRVVTLAA---------- 94 (270)
T ss_dssp CEEEEECC-----EECC-CCSCCSCCCEEECTTCC-----EEEEET---------------TTEEEEECT----------
T ss_pred CcEEEecCCCcccceEe-eCCcCCcceeEECCCCC-----EEEEcC---------------CCEEEEEeC----------
Confidence 56888888776655442 12223456788999886 555431 236889986
Q ss_pred hhhccCCCCCCceecCCC-CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 242 ELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~-~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
.++....+... .......+++|||+ |+++... ...|++++..+........
T Consensus 95 -------~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----------~~~i~~~~~~~~~~~~~~~---------- 146 (270)
T 1rwi_B 95 -------GSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRG----------NNRVVKLAAGSKTQTVLPF---------- 146 (270)
T ss_dssp -------TCSCCEECCCCSCSSEEEEEECTTCC-EEEEEGG----------GTEEEEECTTCCSCEECCC----------
T ss_pred -------CCceEeeeecCCcCCCcceEECCCCC-EEEEECC----------CCEEEEEECCCceeEeecc----------
Confidence 55544444322 23467788999997 5554432 2358888643322111000
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeEEEeecCCEEEEEEeCCC
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPV 399 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~~~~~l~~~~~~~~ 399 (715)
..+ ..+..++++++|+ +|++... ...|+++|.+++......... .......++++| .++++...
T Consensus 147 ----~~~-----~~p~~i~~~~~g~-l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~-- 211 (270)
T 1rwi_B 147 ----TGL-----NDPDGVAVDNSGN-VYVTDTD--NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHN-- 211 (270)
T ss_dssp ----CSC-----CSCCCEEECTTCC-EEEEEGG--GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETT--
T ss_pred ----ccC-----CCceeEEEeCCCC-EEEEECC--CCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECC--
Confidence 000 1245677888987 6665432 347899999877765543322 212223444444 55554432
Q ss_pred CCCeEEEEeec
Q 005093 400 DVPQVKYGYFV 410 (715)
Q Consensus 400 ~p~~l~~~~~~ 410 (715)
...|++++..
T Consensus 212 -~~~v~~~~~~ 221 (270)
T 1rwi_B 212 -TNQVVKLLAG 221 (270)
T ss_dssp -TSCEEEECTT
T ss_pred -CCcEEEEcCC
Confidence 2347776654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0043 Score=68.56 Aligned_cols=229 Identities=10% Similarity=0.036 Sum_probs=138.0
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 93 (715)
...|..+++++... ..+ .++ ..+.......|++++..|+++.. ....|+.+. +++..+.+......
T Consensus 14 ~~~I~~i~l~~~~~--~~~--~~~-~~~~~~~~l~~d~~~~~lywtD~---~~~~I~r~~~~g~~~~~v~~~g~~----- 80 (628)
T 4a0p_A 14 RADIRRISLETNNN--NVA--IPL-TGVKEASALDFDVTDNRIYWTDI---SLKTISRAFMNGSALEHVVEFGLD----- 80 (628)
T ss_dssp TTEEEEEESSCTTC--EEE--CCC-CSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSCS-----
T ss_pred CCcEEEEECCCCCc--ceE--EEc-CCCCceEEEEEECCCCEEEEEEC---CCCeEEEEECCCCCcEEEEeCCCC-----
Confidence 44677777765432 111 122 12345778899999988877643 234677777 55445544432211
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 173 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 173 (715)
...+++..+.+++|++. +. ....|.+.++++..
T Consensus 81 ----~P~GlAvD~~~~~LY~t-D~------------------------------------------~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 81 ----YPEGMAVDWLGKNLYWA-DT------------------------------------------GTNRIEVSKLDGQH 113 (628)
T ss_dssp ----CCCEEEEETTTTEEEEE-ET------------------------------------------TTTEEEEEETTSTT
T ss_pred ----CcceEEEEeCCCEEEEE-EC------------------------------------------CCCEEEEEecCCCc
Confidence 12678888888888774 21 12679999998877
Q ss_pred eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc
Q 005093 174 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 253 (715)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (715)
.+.+. ...-.....++..|.... |+++.+. ....|+++++ ++...
T Consensus 114 ~~~l~-~~~l~~P~~iavdp~~G~----lY~tD~g-------------~~~~I~r~~~-----------------dG~~~ 158 (628)
T 4a0p_A 114 RQVLV-WKDLDSPRALALDPAEGF----MYWTEWG-------------GKPKIDRAAM-----------------DGSER 158 (628)
T ss_dssp CEEEE-CSSCCCEEEEEEETTTTE----EEEEECS-------------SSCEEEEEET-----------------TSCSC
T ss_pred EEEEE-eCCCCCcccEEEccCCCe----EEEeCCC-------------CCCEEEEEeC-----------------CCCce
Confidence 66652 122224567788886665 7776531 1347999997 66666
Q ss_pred eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccC
Q 005093 254 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 333 (715)
Q Consensus 254 ~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~ 333 (715)
+.+.........+++++++++|+|+.... ..|+++++++...+.+... ..
T Consensus 159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~----------~~I~~~d~dG~~~~v~~~~-------------l~------- 208 (628)
T 4a0p_A 159 TTLVPNVGRANGLTIDYAKRRLYWTDLDT----------NLIESSNMLGLNREVIADD-------------LP------- 208 (628)
T ss_dssp EEEECSCSSEEEEEEETTTTEEEEEETTT----------TEEEEEETTSCSCEEEEEC-------------CS-------
T ss_pred EEEECCCCCcceEEEccccCEEEEEECCC----------CEEEEEcCCCCceEEeecc-------------CC-------
Confidence 66655555677899999999999988653 3699999877443211100 00
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 005093 334 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 372 (715)
Q Consensus 334 ~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 372 (715)
.+..++. ++..||++. .....|+++|..+|+.+.+
T Consensus 209 ~P~glav--~~~~ly~tD--~~~~~I~~~dk~tg~~~~~ 243 (628)
T 4a0p_A 209 HPFGLTQ--YQDYIYWTD--WSRRSIERANKTSGQNRTI 243 (628)
T ss_dssp CEEEEEE--ETTEEEEEE--TTTTEEEEEETTTCCSCEE
T ss_pred CceEEEE--ECCEEEEec--CCCCEEEEEECCCCCceEE
Confidence 0112223 334576654 2345788889777764433
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0013 Score=70.40 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=55.7
Q ss_pred ceEEEEEccC--Cce--EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 162 PSLFVININS--GEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 162 ~~l~~~~~~~--g~~--~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
..+-++|.++ ++. ..+ +.......+.+||||+. ++.+. . ....+.++|+...+.
T Consensus 254 ~~V~VID~~~~~~~~~~~~I---pvg~~PhGv~~sPDGk~----v~V~~-~-------------~s~~VsVid~~~~~~- 311 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYI---PIANNPHGCNMAPDKKH----LCVAG-K-------------LSPTVTVLDVTRFDA- 311 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEE---EEESSCCCEEECTTSSE----EEEEC-T-------------TSSBEEEEEGGGHHH-
T ss_pred CcEEEEeCcccCCceeEEEE---ecCCCceEEEEcCCCCE----EEEeC-C-------------CCCeEEEEECccccc-
Confidence 4589999987 433 233 22335567899999996 55443 2 224799999721000
Q ss_pred hhhhhhhccCCCCC-Cc-eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCC
Q 005093 238 ASELELKESSSEDL-PV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 238 ~~~~~~~~~~~~~~-~~-~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
..+.+..-. .. ..+ .........+|+||| . +|++..- ..++-++|+++
T Consensus 312 -----~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~-aY~t~~l---------dsqV~kwdi~~ 361 (595)
T 1fwx_A 312 -----VFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-N-AYTSLFL---------DSQVVKWNIED 361 (595)
T ss_dssp -----HHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-E-EEEEETT---------TTEEEEEEHHH
T ss_pred -----ccccccCcccceEEEc-CCCCCcceEEECCCC-e-EEEEEec---------CCcEEEEEhhH
Confidence 000000100 11 111 112246778999999 5 5666543 24577788765
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0048 Score=59.26 Aligned_cols=210 Identities=13% Similarity=0.110 Sum_probs=117.3
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
...+..+|.|++++|+.+.+. ...++.++..|+..+...+... .-..++++.++|+ ++.+ .+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~---~~~I~~ld~~g~v~~~i~l~g~--------~D~EGIa~~~~g~-~~vs-~E~---- 89 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINK---PAAIVEMTTNGDLIRTIPLDFV--------KDLETIEYIGDNQ-FVIS-DER---- 89 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEET---TEEEEEEETTCCEEEEEECSSC--------SSEEEEEECSTTE-EEEE-ETT----
T ss_pred cCcceeEEeCCCCEEEEEECC---CCeEEEEeCCCCEEEEEecCCC--------CChHHeEEeCCCE-EEEE-ECC----
Confidence 567889999999988877664 4579999955776666554321 1126888988884 3333 321
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce----Eeec----CCCCCCccceEEEecC
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV----QAVK----GIPKSLSVGQVVWAPL 194 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~----~~l~----~~~~~~~~~~~~~spd 194 (715)
...|+++++..... .... ..+.+.....++|+|+
T Consensus 90 --------------------------------------~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~ 131 (255)
T 3qqz_A 90 --------------------------------------DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ 131 (255)
T ss_dssp --------------------------------------TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT
T ss_pred --------------------------------------CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC
Confidence 24466665543221 1111 1234556789999999
Q ss_pred CCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecC-------CCCcccccee
Q 005093 195 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-------ESISSAFFPR 267 (715)
Q Consensus 195 g~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt-------~~~~~~~~~~ 267 (715)
+++ |+.+.... + ..||.++- . ..+...+.+. ..-......+
T Consensus 132 ~~~----L~va~E~~-p------------~~i~~~~g-~--------------~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 132 DHT----FWFFKEKN-P------------IEVYKVNG-L--------------LSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTE----EEEEEESS-S------------EEEEEEES-T--------------TCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCE----EEEEECcC-C------------ceEEEEcc-c--------------ccCCceeeecchhhccccccCCceeEE
Confidence 987 66654221 1 25777661 0 0111111110 0112357788
Q ss_pred EcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC--CcccceeeeeeceecCCCCCccccccCCCCCCccccCCC
Q 005093 268 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF--SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 345 (715)
Q Consensus 268 ~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~--~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~ 345 (715)
+.|....|+.++... ..|..+|.++.-.. .|..+... ....++ ....+++.++|+
T Consensus 180 ~dp~tg~lliLS~~s----------~~L~~~d~~g~~~~~~~L~~g~~~--------l~~~~~-----qpEGia~d~~G~ 236 (255)
T 3qqz_A 180 FNQQKNTLLVLSHES----------RALQEVTLVGEVIGEMSLTKGSRG--------LSHNIK-----QAEGVAMDASGN 236 (255)
T ss_dssp EETTTTEEEEEETTT----------TEEEEECTTCCEEEEEECSTTGGG--------CSSCCC-----SEEEEEECTTCC
T ss_pred EcCCCCeEEEEECCC----------CeEEEEcCCCCEEEEEEcCCccCC--------cccccC-----CCCeeEECCCCC
Confidence 999888898888764 35778886653111 11111100 001111 234677899997
Q ss_pred EEEEEeeeCCeeEEEEEECCC
Q 005093 346 TMLLSSIWGSSQVIISVNVSS 366 (715)
Q Consensus 346 ~l~~~~~~~~~~~l~~~d~~t 366 (715)
+|+++.. +.+|++...+
T Consensus 237 -lyIvsE~---n~~y~f~~~~ 253 (255)
T 3qqz_A 237 -IYIVSEP---NRFYRFTPQS 253 (255)
T ss_dssp -EEEEETT---TEEEEEEC--
T ss_pred -EEEEcCC---ceEEEEEecC
Confidence 7776543 3888887543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0064 Score=67.14 Aligned_cols=230 Identities=10% Similarity=0.038 Sum_probs=132.1
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCcc--EEEEecCcccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL--EKEFHVPQTVHGS 92 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 92 (715)
...|..+++++...+.+. +...........+++++.+|.++.- ....|+.+...|.. +.+... +.
T Consensus 17 ~~~I~~i~~~~~~~~~~~-----~~~~~~~~~~ld~~~~~~~ly~sD~---~~~~I~r~~~~g~~~~~~v~~~--~~--- 83 (619)
T 3s94_A 17 RRDLRLVDATNGKENATI-----VVGGLEDAAAVDFVFSHGLIYWSDV---SEEAIKRTEFNKTESVQNVVVS--GL--- 83 (619)
T ss_dssp SSBEEEECCC--------------CBCCSCEEEEEEETTTTEEEEEET---TTTEEEEEEC-----CEEEECS--SC---
T ss_pred cccEEEEeCCCCcceEEE-----EEcCCCceEEEEEEeCCCEEEEEEC---CCCeEEEEEccCCCceEEEEeC--CC---
Confidence 446778777655321111 1122356778899999988876643 23367776633322 222221 11
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 172 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 172 (715)
....+++..+.+++|++. +. ....|.+.++++.
T Consensus 84 ----~~P~GlAvD~~~~~ly~~-d~------------------------------------------~~~~I~v~~~dG~ 116 (619)
T 3s94_A 84 ----LSPDGLACDWLGEKLYWT-DS------------------------------------------ETNRIEVSNLDGS 116 (619)
T ss_dssp ----SCEEEEEEETTTTEEEEE-ET------------------------------------------TTTEEEEEETTSC
T ss_pred ----CCcCeEEEEecCCEEEEE-eC------------------------------------------CCCEEEEEECCCC
Confidence 112688899988888764 21 1367999999887
Q ss_pred ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 173 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
..+.+. ...-.....+++.|.+.. |+|+.+. ....|+++++ ++..
T Consensus 117 ~~~~l~-~~~l~~P~~Iavdp~~g~----ly~tD~g-------------~~~~I~r~~~-----------------dG~~ 161 (619)
T 3s94_A 117 LRKVLF-WQELDQPRAIALDPSSGF----MYWTDWG-------------EVPKIERAGM-----------------DGSS 161 (619)
T ss_dssp SCEEEE-CSSCSCCCCEEEETTTTE----EEEEECS-------------SSCEEEEEET-----------------TSCS
T ss_pred CEEEEE-eCCCCCCceEEEecCCCe----EEEeccC-------------CCCEEEEEEC-----------------CCCc
Confidence 766662 122224567889998776 7777532 1247999997 5555
Q ss_pred ceecC-CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccc
Q 005093 253 VVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 331 (715)
Q Consensus 253 ~~~lt-~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~ 331 (715)
.+.+. .........++++++++|+|+.... ..|+++++++...+.+.... +.
T Consensus 162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~----------~~I~~~~~dG~~~~~~~~~~--------------~~--- 214 (619)
T 3s94_A 162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKL----------NFIHKSNLDGTNRQAVVKGS--------------LP--- 214 (619)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEETTT----------CCEEEESSSCCEEC-------------------------
T ss_pred eEEEEeCCCCCCcEEEEEccCCEEEEEeCCC----------CeEEEecCCCCccEEEEeCC--------------CC---
Confidence 54443 3344567789999999999887542 46999998875543332110 00
Q ss_pred cCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 005093 332 SSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 372 (715)
Q Consensus 332 ~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 372 (715)
.+..+++. +..||++. -....|+++|..+|+....
T Consensus 215 --~P~gi~~~--~~~ly~td--~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 215 --HPFALTLF--EDILYWTD--WSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp ---CCCEEES--SSEEEEEC--TTTCSEEEEESSSCCCCEE
T ss_pred --CceEEEEe--CCEEEEec--CCCCEEEEEECCCCcccEE
Confidence 12334443 33576653 3345799999988765443
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00027 Score=67.32 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=78.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHH-----------HH------HhCCcEEEEEcCCCCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLA-----------FL------SSVGYSLLIVNYRGSLG 523 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~-----------~l------a~~G~~vi~~d~rG~~~ 523 (715)
.+..+.-|++.... .....|+||+++|||+.+... +..+.+ .+ =.+-..++.+|.+-..|
T Consensus 30 ~~~~lFywf~es~~--~~~~~Pl~lwlnGGPGcSS~~-~g~~~E~GP~~v~~~~~~l~~N~~sW~~~anvlfiDqPvGtG 106 (255)
T 1whs_A 30 AGRSLFYLLQEAPE--DAQPAPLVLWLNGGPGCSSVA-YGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVG 106 (255)
T ss_dssp TTEEEEEEEECCCG--GGCSCCEEEEECCTTTBCTTT-THHHHTSSSEEECGGGCCEEECTTCGGGTSEEEEECCSTTST
T ss_pred CCcEEEEEEEEecC--CCCCCCEEEEECCCCchHHHH-HHHHhccCCeEecCCCCeeeeCcccccccCCEEEEecCCCCc
Confidence 45677777775432 345789999999999865322 011100 00 01236799999653333
Q ss_pred CchhhhhcCCCCCC-ccchhhHHHHHHHHHH-cCCCCCceEEEEEeChhHHHHHHHHhhC------CCceeEEEecCCcc
Q 005093 524 FGEEALQSLPGKVG-SQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLC 595 (715)
Q Consensus 524 ~g~~~~~~~~~~~~-~~~~~d~~~~i~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~~~v~~~~~~ 595 (715)
+............. ....+|+..+++...+ .+.....++.|+|.|+||..+..+|..- .-.++++++.+|++
T Consensus 107 fSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inLkGi~ign~~~ 186 (255)
T 1whs_A 107 FSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVGNGLI 186 (255)
T ss_dssp TCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEEEEEEEEEECC
T ss_pred cCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCcccccceEEecCCcc
Confidence 43221110000011 1234555566553333 3345567899999999999888776421 23589999999988
Q ss_pred hhh
Q 005093 596 NLA 598 (715)
Q Consensus 596 ~~~ 598 (715)
+..
T Consensus 187 d~~ 189 (255)
T 1whs_A 187 DDY 189 (255)
T ss_dssp BHH
T ss_pred CHH
Confidence 754
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.013 Score=64.70 Aligned_cols=180 Identities=9% Similarity=-0.041 Sum_probs=112.2
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|++++++++..+.+. ..+-.....++..+.+.. |+++.. ....|.++++
T Consensus 59 ~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~~~----LY~tD~--------------~~~~I~v~~~---------- 109 (628)
T 4a0p_A 59 KTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLGKN----LYWADT--------------GTNRIEVSKL---------- 109 (628)
T ss_dssp TEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET----------
T ss_pred CeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCCCE----EEEEEC--------------CCCEEEEEec----------
Confidence 67999999887666552 222224567788888887 777642 2247999997
Q ss_pred hhhccCCCCCCceecC-CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 242 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt-~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
++...+.|. ..-......++.|....|+|+.... ..+|+++++++...+.+...
T Consensus 110 -------dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~---------~~~I~r~~~dG~~~~~l~~~--------- 164 (628)
T 4a0p_A 110 -------DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG---------KPKIDRAAMDGSERTTLVPN--------- 164 (628)
T ss_dssp -------TSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEEEECS---------
T ss_pred -------CCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC---------CCEEEEEeCCCCceEEEECC---------
Confidence 555555554 3333567888999878898886432 24699999887554332210
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCC
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 400 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~ 400 (715)
.. .+..+++.++++.||++-. ....|+++|++++..+.+..... .-..++.+++.+|++. ..
T Consensus 165 ----~~-------~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~--~P~glav~~~~ly~tD---~~ 226 (628)
T 4a0p_A 165 ----VG-------RANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLP--HPFGLTQYQDYIYWTD---WS 226 (628)
T ss_dssp ----CS-------SEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCS--CEEEEEEETTEEEEEE---TT
T ss_pred ----CC-------CcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCC--CceEEEEECCEEEEec---CC
Confidence 00 1235667787888888654 44589999997766644432221 2235566677887765 23
Q ss_pred CCeEEEEeecccC
Q 005093 401 VPQVKYGYFVDKA 413 (715)
Q Consensus 401 p~~l~~~~~~~~~ 413 (715)
...|++++..+++
T Consensus 227 ~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 227 RRSIERANKTSGQ 239 (628)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCEEEEEECCCCC
Confidence 4468888755443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.02 Score=56.34 Aligned_cols=172 Identities=10% Similarity=-0.012 Sum_probs=91.2
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|+++|+ +++...+...........+.++|||+ +++... ....|+++|.
T Consensus 120 ~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 169 (299)
T 2z2n_A 120 NRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-----LWFTEN--------------QNNAIGRITE---------- 169 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-----EEEEET--------------TTTEEEEECT----------
T ss_pred ceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-----EEEEeC--------------CCCEEEEEcC----------
Confidence 56888888 55555442111223456778899885 665541 2236888883
Q ss_pred hhhccCCCCCCceec--CCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 242 ELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 242 ~~~~~~~~~~~~~~l--t~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
+++...+ ...........++++|+ |++..... ..|++++. ++....+.
T Consensus 170 --------~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~----------~~i~~~~~-~g~~~~~~---------- 219 (299)
T 2z2n_A 170 --------SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIG----------NKIGRITT-SGEITEFK---------- 219 (299)
T ss_dssp --------TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTT----------TEEEEECT-TCCEEEEE----------
T ss_pred --------CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCC----------ceEEEECC-CCcEEEEE----------
Confidence 3444332 22233456788899987 54444321 35888887 43321110
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC--CCceeEEEeecCCEEEEEEeC
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSS 397 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~--~~~~~~~~s~~~~~l~~~~~~ 397 (715)
..... ..+..+.++++|+ +++... ....|+++|+ +++...+.... .......+ .++.+++...
T Consensus 220 -~~~~~-------~~~~~i~~~~~g~-l~v~~~--~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~--~~g~l~v~~~- 284 (299)
T 2z2n_A 220 -IPTPN-------ARPHAITAGAGID-LWFTEW--GANKIGRLTS-NNIIEEYPIQIKSAEPHGICF--DGETIWFAME- 284 (299)
T ss_dssp -CSSTT-------CCEEEEEECSTTC-EEEEET--TTTEEEEEET-TTEEEEEECSSSSCCEEEEEE--CSSCEEEEET-
T ss_pred -CCCCC-------CCceeEEECCCCC-EEEecc--CCceEEEECC-CCceEEEeCCCCCCccceEEe--cCCCEEEEec-
Confidence 00000 0233456778887 666542 2357889998 57766653222 11222233 4445655442
Q ss_pred CCCCCeEEEEeecc
Q 005093 398 PVDVPQVKYGYFVD 411 (715)
Q Consensus 398 ~~~p~~l~~~~~~~ 411 (715)
...|+++++.+
T Consensus 285 ---~~~l~~~~~~~ 295 (299)
T 2z2n_A 285 ---CDKIGKLTLIK 295 (299)
T ss_dssp ---TTEEEEEEEC-
T ss_pred ---CCcEEEEEcCc
Confidence 24677777643
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.011 Score=56.65 Aligned_cols=205 Identities=10% Similarity=0.118 Sum_probs=111.2
Q ss_pred ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec
Q 005093 99 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 178 (715)
Q Consensus 99 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~ 178 (715)
+++++|.||++.|+.+.+. ...|+.+|+++...+.+.
T Consensus 29 lSGla~~~~~~~L~aV~d~-------------------------------------------~~~I~~ld~~g~v~~~i~ 65 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINK-------------------------------------------PAAIVEMTTNGDLIRTIP 65 (255)
T ss_dssp EEEEEEETTTTEEEEEEET-------------------------------------------TEEEEEEETTCCEEEEEE
T ss_pred cceeEEeCCCCEEEEEECC-------------------------------------------CCeEEEEeCCCCEEEEEe
Confidence 3899999999888877553 267999999844444542
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc---ee
Q 005093 179 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VN 255 (715)
Q Consensus 179 ~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 255 (715)
..+......+++.++|. ++.+. + ++..|++++++ ..++. ..
T Consensus 66 -l~g~~D~EGIa~~~~g~-----~~vs~-E-------------~~~~l~~~~v~----------------~~~~i~~~~~ 109 (255)
T 3qqz_A 66 -LDFVKDLETIEYIGDNQ-----FVISD-E-------------RDYAIYVISLT----------------PNSEVKILKK 109 (255)
T ss_dssp -CSSCSSEEEEEECSTTE-----EEEEE-T-------------TTTEEEEEEEC----------------TTCCEEEEEE
T ss_pred -cCCCCChHHeEEeCCCE-----EEEEE-C-------------CCCcEEEEEcC----------------CCCeeeeeee
Confidence 22223456777777664 33332 1 22467777652 11211 11
Q ss_pred c------CCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccc
Q 005093 256 L------TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 329 (715)
Q Consensus 256 l------t~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g 329 (715)
. ..........+|+|++++|+.+..+. ...||.++--. ....++... + +.+....
T Consensus 110 ~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~---------p~~i~~~~g~~-~~~~l~i~~-~--~~~~~~~------ 170 (255)
T 3qqz_A 110 IKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN---------PIEVYKVNGLL-SSNELHISK-D--KALQRQF------ 170 (255)
T ss_dssp EECCCSSCCCSSCCEEEEEETTTTEEEEEEESS---------SEEEEEEESTT-CSSCCEEEE-C--HHHHHTC------
T ss_pred eccccccccccCCcceEEEeCCCCEEEEEECcC---------CceEEEEcccc-cCCceeeec-c--hhhcccc------
Confidence 1 12233468899999999998777653 23688887100 001111100 0 0000000
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC---------CceeEEEeecCCEEEEEEeCCCC
Q 005093 330 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES---------NFSWSLLTLDGDNIIAVSSSPVD 400 (715)
Q Consensus 330 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~---------~~~~~~~s~~~~~l~~~~~~~~~ 400 (715)
.......+.+.|....+|+.+... ..|..+|.++..+..+....+ ......++++|+ ||+++ .
T Consensus 171 -~~~d~S~l~~dp~tg~lliLS~~s--~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvs----E 242 (255)
T 3qqz_A 171 -TLDDVSGAEFNQQKNTLLVLSHES--RALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVS----E 242 (255)
T ss_dssp -CSSCCCEEEEETTTTEEEEEETTT--TEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEE----T
T ss_pred -ccCCceeEEEcCCCCeEEEEECCC--CeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEc----C
Confidence 011345566777777788876543 588889986553333333322 123346666664 66553 3
Q ss_pred CCeEEEEee
Q 005093 401 VPQVKYGYF 409 (715)
Q Consensus 401 p~~l~~~~~ 409 (715)
|..+|++..
T Consensus 243 ~n~~y~f~~ 251 (255)
T 3qqz_A 243 PNRFYRFTP 251 (255)
T ss_dssp TTEEEEEEC
T ss_pred CceEEEEEe
Confidence 446777653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.003 Score=64.58 Aligned_cols=103 Identities=11% Similarity=-0.079 Sum_probs=61.3
Q ss_pred CCceEEEEecCCCC-CC-eEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 005093 53 SGSKLLVVRNPENE-SP-IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 129 (715)
Q Consensus 53 dg~~la~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~ 129 (715)
+..+ +|+.+.+.+ -. .+..++ .+++....+..... -++.+||||++|+.........
T Consensus 30 ~~~~-~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-----------P~i~~spDg~~lyVan~~~~r~-------- 89 (368)
T 1mda_H 30 ISRR-SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-----------SLAVAGHSGSDFALASTSFARS-------- 89 (368)
T ss_dssp CTTE-EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-----------CEEEECTTSSCEEEEEEEETTT--------
T ss_pred CCCe-EEEECCccCCccceEEEEECCCCeEEEEEeCCCC-----------CceEECCCCCEEEEEccccccc--------
Confidence 3344 677665422 12 677788 66666655554332 2799999999987764311000
Q ss_pred CCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCC--C----CCccceEEEecCCCCCccEEE
Q 005093 130 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP--K----SLSVGQVVWAPLNEGLHQYLV 203 (715)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~--~----~~~~~~~~~spdg~~~~~~i~ 203 (715)
..|+ ....|.++|+.++++..-.... . ......+.+||||++ ++
T Consensus 90 ---------------------~~G~-----~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~----ly 139 (368)
T 1mda_H 90 ---------------------AKGK-----RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC----LL 139 (368)
T ss_dssp ---------------------TSSS-----EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC----EE
T ss_pred ---------------------ccCC-----CCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCE----EE
Confidence 0022 3478999999998865431011 1 123568899999997 55
Q ss_pred EE
Q 005093 204 FV 205 (715)
Q Consensus 204 ~~ 205 (715)
..
T Consensus 140 Va 141 (368)
T 1mda_H 140 FF 141 (368)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00036 Score=73.29 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=74.4
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHH------------H------HhCCcEEEEEcC-CCCC
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAF------------L------SSVGYSLLIVNY-RGSL 522 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~------------l------a~~G~~vi~~d~-rG~~ 522 (715)
+..+..|++...+ .....|+||++||||+.... + ..+.. + =.+-..++.+|. +|.|
T Consensus 31 ~~~lfy~f~~s~~--~~~~~Pl~lwlnGGPG~Ss~--~-g~~~e~GP~~~~~~~~~l~~n~~sw~~~~~~lfiDqP~GtG 105 (452)
T 1ivy_A 31 SKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSL--D-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVG 105 (452)
T ss_dssp TEEEEEEEECCSS--CGGGSCEEEEECCTTTBCTH--H-HHHTTTSSEEECTTSSCEEECTTCGGGSSEEEEECCSTTST
T ss_pred CCeEEEEEEEcCC--CCCCCCEEEEECCCCcHHHH--H-HHHHhcCCcEEeCCCceeeeCCCcccccccEEEEecCCCCC
Confidence 4567766665432 33568999999999987432 1 11100 0 013467999996 5643
Q ss_pred CCchhhhhcCCCCCCc---cchhhHHHHH-HHHHHcCCCCCceEEEEEeChhHHHHHHHHhh----CCCceeEEEecCCc
Q 005093 523 GFGEEALQSLPGKVGS---QDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPL 594 (715)
Q Consensus 523 ~~g~~~~~~~~~~~~~---~~~~d~~~~i-~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~----~p~~~~~~v~~~~~ 594 (715)
+.... ...+.. ....|...++ +|+...+.....++.|+|+|+||..+..+|.. .+-.++++++.+|+
T Consensus 106 -fS~~~----~~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~g~~ign~~ 180 (452)
T 1ivy_A 106 -FSYSD----DKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGL 180 (452)
T ss_dssp -TCEES----SCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCC
T ss_pred -cCCcC----CCCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccceEEecCCc
Confidence 32211 111111 1234444443 44444334556889999999999966655542 34578999999998
Q ss_pred chh
Q 005093 595 CNL 597 (715)
Q Consensus 595 ~~~ 597 (715)
++.
T Consensus 181 ~d~ 183 (452)
T 1ivy_A 181 SSY 183 (452)
T ss_dssp SBH
T ss_pred cCh
Confidence 764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.42 E-value=0.011 Score=58.91 Aligned_cols=160 Identities=12% Similarity=0.190 Sum_probs=93.1
Q ss_pred cceEEeeCCCCceEEEEecCCC------------CCCeEEEEecCCccEEEEecCccccccccCCCcccceeec----CC
Q 005093 44 GASAVVPSPSGSKLLVVRNPEN------------ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN----SD 107 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wS----pD 107 (715)
.+...+++|||+ |++.....+ ....++.+...++...+....... ..+.|+ ||
T Consensus 118 ~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~----------~~i~~~~~~d~d 186 (314)
T 1pjx_A 118 GCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFP----------NGIAVRHMNDGR 186 (314)
T ss_dssp CCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSE----------EEEEEEECTTSC
T ss_pred CCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCc----------ceEEEecccCCC
Confidence 467789999996 444432210 123577776445554443221122 578999 99
Q ss_pred CCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc-CCceE---eecCCCCC
Q 005093 108 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQ---AVKGIPKS 183 (715)
Q Consensus 108 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~---~l~~~~~~ 183 (715)
|+.|++.... ...|++++++ +++.. .+......
T Consensus 187 g~~l~v~~~~-------------------------------------------~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 187 PYQLIVAETP-------------------------------------------TKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp EEEEEEEETT-------------------------------------------TTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred CCEEEEEECC-------------------------------------------CCeEEEEECCCCCccccceEEEECCCC
Confidence 9877664221 2568888876 45422 11001111
Q ss_pred --CccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC-ceecCCCC
Q 005093 184 --LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI 260 (715)
Q Consensus 184 --~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~ 260 (715)
.....+.+++||+ |++... ....|+++|. ++++ ...+..+.
T Consensus 224 ~~~~p~~i~~d~~G~-----l~v~~~--------------~~~~i~~~d~-----------------~~g~~~~~~~~~~ 267 (314)
T 1pjx_A 224 HEGGADGMDFDEDNN-----LLVANW--------------GSSHIEVFGP-----------------DGGQPKMRIRCPF 267 (314)
T ss_dssp SSCEEEEEEEBTTCC-----EEEEEE--------------TTTEEEEECT-----------------TCBSCSEEEECSS
T ss_pred CCCCCCceEECCCCC-----EEEEEc--------------CCCEEEEEcC-----------------CCCcEeEEEeCCC
Confidence 2355688999985 555432 2236889986 5333 33443333
Q ss_pred ccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCC
Q 005093 261 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 303 (715)
Q Consensus 261 ~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 303 (715)
.....++++|||+.|++..... ..|+++++...
T Consensus 268 ~~~~~i~~~~dg~~l~v~~~~~----------~~l~~~~~~~~ 300 (314)
T 1pjx_A 268 EKPSNLHFKPQTKTIFVTEHEN----------NAVWKFEWQRN 300 (314)
T ss_dssp SCEEEEEECTTSSEEEEEETTT----------TEEEEEECSSC
T ss_pred CCceeEEECCCCCEEEEEeCCC----------CeEEEEeCCCC
Confidence 4577889999999887666442 35888887653
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00052 Score=69.22 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=61.6
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
+..+.++++||.+.. ...|..+...|. +.|+.+|+++.. + ...++++.+.+...+... ..
T Consensus 44 ~~~~~l~~~hg~~g~--~~~~~~~~~~l~---~~v~~~~~~~~~----------~----~~~~~~~a~~~~~~i~~~-~~ 103 (316)
T 2px6_A 44 SSERPLFLVHPIEGS--TTVFHSLASRLS---IPTYGLQCTRAA----------P----LDSIHSLAAYYIDCIRQV-QP 103 (316)
T ss_dssp CSSCCEEEECCTTCC--SGGGHHHHHHCS---SCEEEECCCTTS----------C----TTCHHHHHHHHHHHHTTT-CS
T ss_pred CCCCeEEEECCCCCC--HHHHHHHHHhcC---CCEEEEECCCCC----------C----cCCHHHHHHHHHHHHHHh-CC
Confidence 345679999996654 446666666663 899999998310 1 123555554443333332 12
Q ss_pred CceEEEEEeChhHHHHHHHHhhCC---Cc---eeEEEecCCc
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAP---DK---FVAAAARNPL 594 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p---~~---~~~~v~~~~~ 594 (715)
..++.++||||||.++..++.+.+ .. ++.++++++.
T Consensus 104 ~~~~~l~G~S~Gg~va~~~a~~l~~~g~~~p~v~~l~li~~~ 145 (316)
T 2px6_A 104 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 145 (316)
T ss_dssp SCCCEEEEETHHHHHHHHHHHHHHHHC---CCCCEEEEESCS
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHcCCcccccceEEEEcCC
Confidence 367999999999999999887653 34 7778776654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0091 Score=62.96 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=90.9
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|.+||+++++..... ......+..+.|++ .. ++..+ .+..|.++|+
T Consensus 193 g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~--~~----l~s~s---------------~dg~i~vwd~---------- 240 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTL-IHHCEAVLHLRFNN--GM----MVTCS---------------KDRSIAVWDM---------- 240 (435)
T ss_dssp SCEEEEESSSCCEEEEE-CCCCSCEEEEECCT--TE----EEEEE---------------TTSCEEEEEC----------
T ss_pred CeEEEEECCCCcEEEEE-cCCCCcEEEEEEcC--CE----EEEee---------------CCCcEEEEeC----------
Confidence 56999999988765431 22333566677753 34 54443 2236778886
Q ss_pred hhhccCCCCCCc----eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeee
Q 005093 242 ELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 317 (715)
Q Consensus 242 ~~~~~~~~~~~~----~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~ 317 (715)
.++.. ..+......+....| +|+.|+..+.+. .|.++|+.+++......
T Consensus 241 -------~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~~------- 293 (435)
T 1p22_A 241 -------ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR-----------TIKVWNTSTCEFVRTLN------- 293 (435)
T ss_dssp -------SSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS-----------EEEEEETTTCCEEEEEE-------
T ss_pred -------CCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC-----------eEEEEECCcCcEEEEEc-------
Confidence 33332 344455556666666 788887666542 48888987754311100
Q ss_pred ceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeC
Q 005093 318 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 397 (715)
Q Consensus 318 ~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~ 397 (715)
. +...+..+.| +++ ++++...++ .|..+|+.+++......... .....++.+++.++....+
T Consensus 294 ---~---------~~~~v~~~~~--~~~-~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~l~sg~~d 355 (435)
T 1p22_A 294 ---G---------HKRGIACLQY--RDR-LVVSGSSDN--TIRLWDIECGACLRVLEGHE-ELVRCIRFDNKRIVSGAYD 355 (435)
T ss_dssp ---C---------CSSCEEEEEE--ETT-EEEEEETTS--CEEEEETTTCCEEEEECCCS-SCEEEEECCSSEEEEEETT
T ss_pred ---C---------CCCcEEEEEe--CCC-EEEEEeCCC--eEEEEECCCCCEEEEEeCCc-CcEEEEEecCCEEEEEeCC
Confidence 0 0011223334 455 444444444 46667888887665444322 1233445566655443322
Q ss_pred CCCCCeEEEEeeccc
Q 005093 398 PVDVPQVKYGYFVDK 412 (715)
Q Consensus 398 ~~~p~~l~~~~~~~~ 412 (715)
..|.+.++.++
T Consensus 356 ----g~i~vwd~~~~ 366 (435)
T 1p22_A 356 ----GKIKVWDLVAA 366 (435)
T ss_dssp ----SCEEEEEHHHH
T ss_pred ----CcEEEEECCCC
Confidence 24666666443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.037 Score=54.40 Aligned_cols=235 Identities=11% Similarity=0.049 Sum_probs=123.2
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
..+...+++|||+ |.+. .. ....++.+...++..... .+... .....+.++|||+ |++....
T Consensus 15 ~~~~~i~~d~~g~-l~v~-~~--~~~~v~~~d~~~~~~~~~-~~~~~-------~~~~~i~~~~~g~-l~v~~~~----- 76 (299)
T 2z2n_A 15 TGPYGITVSDKGK-VWIT-QH--KANMISCINLDGKITEYP-LPTPD-------AKVMCLTISSDGE-VWFTENA----- 76 (299)
T ss_dssp CCEEEEEECTTSC-EEEE-ET--TTTEEEEECTTCCEEEEE-CSSTT-------CCEEEEEECTTSC-EEEEETT-----
T ss_pred CCccceEECCCCC-EEEE-ec--CCCcEEEEcCCCCeEEec-CCccc-------CceeeEEECCCCC-EEEeCCC-----
Confidence 4578889999997 3333 32 123566666335443322 22111 1226788999986 5443211
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 202 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i 202 (715)
...|++++.+ ++.+.+...........+.++|||+ |
T Consensus 77 --------------------------------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~-----l 112 (299)
T 2z2n_A 77 --------------------------------------ANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGD-----I 112 (299)
T ss_dssp --------------------------------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-----E
T ss_pred --------------------------------------CCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCC-----E
Confidence 2458888876 4444442011223456778888885 5
Q ss_pred EEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecC--CCCccccceeEcCCCCeEEEEec
Q 005093 203 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 203 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
++... ....|+++|. +++...+. ..........+++||+ |++...
T Consensus 113 ~v~~~--------------~~~~i~~~d~------------------~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~ 159 (299)
T 2z2n_A 113 WFTEM--------------NGNRIGRITD------------------DGKIREYELPNKGSYPSFITLGSDNA-LWFTEN 159 (299)
T ss_dssp EEEET--------------TTTEEEEECT------------------TCCEEEEECSSTTCCEEEEEECTTSC-EEEEET
T ss_pred EEEec--------------CCceEEEECC------------------CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeC
Confidence 55531 1236888883 33333322 2233467788899985 555543
Q ss_pred CCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
.. ..|++++. ++....+.. .... ..+..+.+.++|+ +++... ....|+
T Consensus 160 ~~----------~~i~~~~~-~g~~~~~~~-----------~~~~-------~~~~~i~~~~~g~-l~v~~~--~~~~i~ 207 (299)
T 2z2n_A 160 QN----------NAIGRITE-SGDITEFKI-----------PTPA-------SGPVGITKGNDDA-LWFVEI--IGNKIG 207 (299)
T ss_dssp TT----------TEEEEECT-TCCEEEEEC-----------SSTT-------CCEEEEEECTTSS-EEEEET--TTTEEE
T ss_pred CC----------CEEEEEcC-CCcEEEeeC-----------CCCC-------CcceeEEECCCCC-EEEEcc--CCceEE
Confidence 32 35888887 433221100 0000 0123456778887 666543 234789
Q ss_pred EEECCCCcEEEecCCCC--CceeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 005093 361 SVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 409 (715)
Q Consensus 361 ~~d~~tg~~~~l~~~~~--~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~ 409 (715)
++|+ +++...+..... ......++++|+ +++... ....|++++.
T Consensus 208 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~---~~~~i~~~d~ 253 (299)
T 2z2n_A 208 RITT-SGEITEFKIPTPNARPHAITAGAGID-LWFTEW---GANKIGRLTS 253 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEET---TTTEEEEEET
T ss_pred EECC-CCcEEEEECCCCCCCceeEEECCCCC-EEEecc---CCceEEEECC
Confidence 9999 787766533211 122234455544 554432 2345777665
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.065 Score=59.07 Aligned_cols=208 Identities=14% Similarity=0.078 Sum_probs=123.7
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
.......+.+.+.+|++... ....|+.+. +++..+.+...... ...++++.+.++.|++. +.
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~---~~~~I~r~~~~g~~~~~v~~~~~~---------~p~GlAvD~~~~~lY~t-D~---- 411 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDD---EVRAIRRSFIDGSGSQFVVTAQIA---------HPDGIAVDWVARNLYWT-DT---- 411 (619)
T ss_dssp SSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSCS---------CCCEEEEETTTTEEEEE-ET----
T ss_pred CccEEEEEEcCCCeEEEEeC---CCCeEEEEEcCCCccEEEEECCCC---------CcCceEEecccCcEEEE-eC----
Confidence 45677888888888877643 234677777 44444444432111 12578888778888664 21
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccE
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~ 201 (715)
....|.+.++++...+.+. ...-.....++..|....
T Consensus 412 --------------------------------------~~~~I~v~~~~G~~~~~l~-~~~l~~P~~iavdp~~G~---- 448 (619)
T 3s94_A 412 --------------------------------------GTDRIEVTRLNGTMRKILI-SEDLEEPRAIVLDPMVGY---- 448 (619)
T ss_dssp --------------------------------------TTTEEEEEETTSCSCEEEE-CTTCCSEEEEEEETTTTE----
T ss_pred --------------------------------------CCCcEEEEeCCCCeEEEEE-ECCCCCeeeEEEEcCCCc----
Confidence 2367999999887666662 112224567788887555
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC-CCccccceeEcCCCCeEEEEec
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~~~~spdg~~l~~~~~ 280 (715)
|+|+-+. ....|+++++ ++...+.+.. .-.....+++++++++|+|+..
T Consensus 449 ly~tD~g-------------~~~~I~r~~~-----------------dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~ 498 (619)
T 3s94_A 449 MYWTDWG-------------EIPKIERAAL-----------------DGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDA 498 (619)
T ss_dssp EEEEECS-------------SSCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEecCC-------------CCCEEEEEcc-----------------CCCccEEEEeCCCCCCeeeEEcccCCEEEEEEC
Confidence 7776532 1247999997 4444444433 3445677899999999998875
Q ss_pred CCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
.. ..|.++++++...+.+... .+. .+..++. ++..||++- .....|+
T Consensus 499 ~~----------~~I~~~~~dG~~~~~~~~~--------------~l~-----~P~glav--~~~~ly~tD--~~~~~I~ 545 (619)
T 3s94_A 499 KT----------DKIEVMNTDGTGRRVLVED--------------KIP-----HIFGFTL--LGDYVYWTD--WQRRSIE 545 (619)
T ss_dssp TT----------TEEEEEESSSCCCEEEEEC--------------CCC-----SSCCEEE--ETTEEEEEC--TTSSCEE
T ss_pred CC----------CEEEEEecCCCceEEEecc--------------CCC-----CcEEEEE--ECCEEEEee--cCCCeEE
Confidence 53 3688999876554322110 000 1122333 334566643 3345788
Q ss_pred EEECCCCcEEEec
Q 005093 361 SVNVSSGELLRIT 373 (715)
Q Consensus 361 ~~d~~tg~~~~l~ 373 (715)
++|..+|..+.+.
T Consensus 546 ~~~k~~g~~~~~~ 558 (619)
T 3s94_A 546 RVHKRSAEREVII 558 (619)
T ss_dssp EEESSSCCEEEEE
T ss_pred EEEcCCCceEEEe
Confidence 8888777554443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.013 Score=55.95 Aligned_cols=201 Identities=11% Similarity=0.008 Sum_probs=110.4
Q ss_pred EEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCc
Q 005093 47 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 125 (715)
Q Consensus 47 ~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 125 (715)
...++ || + +|.+....+.+.+..++ .+|+..+...++... -+-..+++|++|+.+..
T Consensus 47 GL~~~-~~-~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~----------FgeGit~~g~~ly~ltw--------- 104 (262)
T 3nol_A 47 GFFYR-NG-Y-FYESTGLNGRSSIRKVDIESGKTLQQIELGKRY----------FGEGISDWKDKIVGLTW--------- 104 (262)
T ss_dssp EEEEE-TT-E-EEEEEEETTEEEEEEECTTTCCEEEEEECCTTC----------CEEEEEEETTEEEEEES---------
T ss_pred eEEEE-CC-E-EEEECCCCCCceEEEEECCCCcEEEEEecCCcc----------ceeEEEEeCCEEEEEEe---------
Confidence 34666 55 4 45655443566788888 778777766664332 23345667888866532
Q ss_pred cCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEE
Q 005093 126 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 205 (715)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~ 205 (715)
....++++|+++.++..-. +-. ......++||+. |+.+
T Consensus 105 ----------------------------------~~~~v~v~D~~t~~~~~ti--~~~--~eG~glt~dg~~----L~~S 142 (262)
T 3nol_A 105 ----------------------------------KNGLGFVWNIRNLRQVRSF--NYD--GEGWGLTHNDQY----LIMS 142 (262)
T ss_dssp ----------------------------------SSSEEEEEETTTCCEEEEE--ECS--SCCCCEEECSSC----EEEC
T ss_pred ----------------------------------eCCEEEEEECccCcEEEEE--ECC--CCceEEecCCCE----EEEE
Confidence 1278999999988765431 111 133456789986 5544
Q ss_pred eecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCC--Cc---cccceeEcCCCCeEEEEe
Q 005093 206 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES--IS---SAFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~--~~---~~~~~~~spdg~~l~~~~ 279 (715)
. ....|+.+|. ++.+. ..+.-. .. ......|. ||+ |+ +.
T Consensus 143 d---------------Gs~~i~~iDp-----------------~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-ly-an 187 (262)
T 3nol_A 143 D---------------GTPVLRFLDP-----------------ESLTPVRTITVTAHGEELPELNELEWV-DGE-IF-AN 187 (262)
T ss_dssp C---------------SSSEEEEECT-----------------TTCSEEEEEECEETTEECCCEEEEEEE-TTE-EE-EE
T ss_pred C---------------CCCeEEEEcC-----------------CCCeEEEEEEeccCCccccccceeEEE-CCE-EE-EE
Confidence 2 2247999996 55443 233221 11 12345676 674 54 43
Q ss_pred cCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 005093 280 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359 (715)
Q Consensus 280 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l 359 (715)
.- ....|.++|..+++....- ++..+....... .+ -......++|+|+++.+|++.. .+..|
T Consensus 188 ~w---------~~~~I~vIDp~tG~V~~~I----d~~~L~~~~~~~-~~--~~~vlNGIA~dp~~~~lfVTGK--~Wp~~ 249 (262)
T 3nol_A 188 VW---------QTNKIVRIDPETGKVTGII----DLNGILAEAGPL-PS--PIDVLNGIAWDKEHHRLFVTGK--LWPKV 249 (262)
T ss_dssp ET---------TSSEEEEECTTTCBEEEEE----ECTTGGGGSCSC-CS--SCCCEEEEEEETTTTEEEEEET--TCSEE
T ss_pred Ec---------cCCeEEEEECCCCcEEEEE----ECCcCccccccc-cC--cCCceEEEEEcCCCCEEEEECC--CCCce
Confidence 32 1246999998887752110 000000000000 00 0012357889999998877653 45678
Q ss_pred EEEEC
Q 005093 360 ISVNV 364 (715)
Q Consensus 360 ~~~d~ 364 (715)
|.+.+
T Consensus 250 ~ev~~ 254 (262)
T 3nol_A 250 FEITL 254 (262)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0098 Score=58.49 Aligned_cols=94 Identities=9% Similarity=0.036 Sum_probs=53.7
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|++++.++.....+...........++++|||+ |+++.. ....|+++|.
T Consensus 142 ~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 192 (286)
T 1q7f_A 142 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-----IFISDN--------------RAHCVKVFNY---------- 192 (286)
T ss_dssp TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-----EEEEEG--------------GGTEEEEEET----------
T ss_pred CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-----EEEEEC--------------CCCEEEEEcC----------
Confidence 56888887665555442111112456788999886 444431 2236888885
Q ss_pred hhhccCCCCCCceecCCC--CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecC
Q 005093 242 ELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 301 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~--~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~ 301 (715)
.+.....+... .......+++|||+ |+.+.... ...|.+++..
T Consensus 193 -------~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~---------~~~i~~~~~~ 237 (286)
T 1q7f_A 193 -------EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHN---------NFNLTIFTQD 237 (286)
T ss_dssp -------TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSS---------SCEEEEECTT
T ss_pred -------CCCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCC---------CEEEEEECCC
Confidence 44444444332 13466788999996 54444321 1258888754
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.016 Score=58.52 Aligned_cols=145 Identities=8% Similarity=0.080 Sum_probs=73.6
Q ss_pred ceEEEEEccCCceEeec--CC-----CCC-CccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEeccc
Q 005093 162 PSLFVININSGEVQAVK--GI-----PKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 233 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~--~~-----~~~-~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 233 (715)
..|++++.++.....+. +. +.. .....++++||+.. |+.+.. .+..|.++++
T Consensus 166 ~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~----l~v~d~--------------~~~~I~~~~~-- 225 (329)
T 3fvz_A 166 SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ----LCVADR--------------ENGRIQCFKT-- 225 (329)
T ss_dssp CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTE----EEEEET--------------TTTEEEEEET--
T ss_pred CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCE----EEEEEC--------------CCCEEEEEEC--
Confidence 56788886554444441 00 011 12557889999665 555431 2347889996
Q ss_pred ccchhhhhhhhccCCCCCCc-eecCC--CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCccc
Q 005093 234 YKSEASELELKESSSEDLPV-VNLTE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 310 (715)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~-~~lt~--~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~ 310 (715)
++++. ..+.. ........+|+| | +++......... ......+++++..+++....
T Consensus 226 ---------------~~G~~~~~~~~~~~~~~~~~~~~~p-g--~~~~~~g~~~v~--~~~~~~v~~~~~~~g~~~~~-- 283 (329)
T 3fvz_A 226 ---------------DTKEFVREIKHASFGRNVFAISYIP-G--FLFAVNGKPYFG--DQEPVQGFVMNFSSGEIIDV-- 283 (329)
T ss_dssp ---------------TTCCEEEEECCTTTTTCEEEEEEET-T--EEEEEECCCCTT--CSCCCCEEEEETTTCCEEEE--
T ss_pred ---------------CCCcEEEEEeccccCCCcceeeecC-C--EEEEeCCCEEec--cCCCcEEEEEEcCCCeEEEE--
Confidence 53443 33322 122456678898 3 334433321111 12334688888777553211
Q ss_pred ceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 005093 311 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 365 (715)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~ 365 (715)
+... ...+ ..+..+++++|| .||++.... .+|+++++.
T Consensus 284 --------~~~~-~~~~-----~~p~~ia~~~dG-~lyvad~~~--~~I~~~~~~ 321 (329)
T 3fvz_A 284 --------FKPV-RKHF-----DMPHDIVASEDG-TVYIGDAHT--NTVWKFTLT 321 (329)
T ss_dssp --------ECCS-SSCC-----SSEEEEEECTTS-EEEEEESSS--CCEEEEEEE
T ss_pred --------EcCC-CCcc-----CCeeEEEECCCC-CEEEEECCC--CEEEEEeCC
Confidence 0000 0001 123466788999 577665433 356666653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.012 Score=62.15 Aligned_cols=169 Identities=16% Similarity=0.116 Sum_probs=92.6
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|.+||+++++..... ......+..+.|+ ++. ++..+ .+..|.++|+
T Consensus 179 g~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~----l~s~s---------------~dg~i~~wd~---------- 226 (445)
T 2ovr_B 179 RTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKR----VVSGS---------------RDATLRVWDI---------- 226 (445)
T ss_dssp SCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTE----EEEEE---------------TTSEEEEEES----------
T ss_pred CeEEEEECCcCcEEEEE-CCCCCcEEEEEec--CCE----EEEEe---------------CCCEEEEEEC----------
Confidence 56999999988765431 2223345566664 554 55443 3346888887
Q ss_pred hhhccCCCCCC-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeece
Q 005093 242 ELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVV 319 (715)
Q Consensus 242 ~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~ 319 (715)
.+++ ...+......+....| ||+.|+..+.+. .|.++|+.+++... +..
T Consensus 227 -------~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~--------- 277 (445)
T 2ovr_B 227 -------ETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF-----------MVKVWDPETETCLHTLQG--------- 277 (445)
T ss_dssp -------SSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS-----------CEEEEEGGGTEEEEEECC---------
T ss_pred -------CCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC-----------EEEEEECCCCcEeEEecC---------
Confidence 4443 3445555556666666 788887666542 47888876643211 100
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCC
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 399 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~ 399 (715)
+...+..+.| +++.++ +...++ .|..+|+.+++......... .....++.+++.++....+
T Consensus 278 -----------~~~~v~~~~~--~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~d-- 338 (445)
T 2ovr_B 278 -----------HTNRVYSLQF--DGIHVV-SGSLDT--SIRVWDVETGNCIHTLTGHQ-SLTSGMELKDNILVSGNAD-- 338 (445)
T ss_dssp -----------CSSCEEEEEE--CSSEEE-EEETTS--CEEEEETTTCCEEEEECCCC-SCEEEEEEETTEEEEEETT--
T ss_pred -----------CCCceEEEEE--CCCEEE-EEeCCC--eEEEEECCCCCEEEEEcCCc-ccEEEEEEeCCEEEEEeCC--
Confidence 0012233445 676554 444344 46667888887665443322 1234566677755543321
Q ss_pred CCCeEEEEeeccc
Q 005093 400 DVPQVKYGYFVDK 412 (715)
Q Consensus 400 ~p~~l~~~~~~~~ 412 (715)
..|.+.++.++
T Consensus 339 --g~i~vwd~~~~ 349 (445)
T 2ovr_B 339 --STVKIWDIKTG 349 (445)
T ss_dssp --SCEEEEETTTC
T ss_pred --CeEEEEECCCC
Confidence 24666666443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.08 Score=51.94 Aligned_cols=235 Identities=11% Similarity=0.037 Sum_probs=123.8
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
......++++||+ |.+. .. ....+..+...++.... ..+... .....+.++++|+ |++...
T Consensus 20 ~~p~~i~~d~~g~-l~v~-~~--~~~~v~~~~~~~~~~~~-~~~~~~-------~~~~~i~~~~~g~-l~v~~~------ 80 (300)
T 2qc5_A 20 SGPYGITSSEDGK-VWFT-QH--KANKISSLDQSGRIKEF-EVPTPD-------AKVMCLIVSSLGD-IWFTEN------ 80 (300)
T ss_dssp CCEEEEEECTTSC-EEEE-ET--TTTEEEEECTTSCEEEE-ECSSTT-------CCEEEEEECTTSC-EEEEET------
T ss_pred CCcceeeECCCCC-EEEE-cC--CCCeEEEECCCCceEEE-ECCCCC-------CcceeEEECCCCC-EEEEec------
Confidence 4567788899987 3333 32 22356666633544432 222111 1225788889886 544321
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 202 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i 202 (715)
....|+++|.+ ++.+.+...........+.+.|+|+ +
T Consensus 81 -------------------------------------~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-----l 117 (300)
T 2qc5_A 81 -------------------------------------GANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-----I 117 (300)
T ss_dssp -------------------------------------TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-----E
T ss_pred -------------------------------------CCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-----E
Confidence 12568888887 6555442111223456778888886 5
Q ss_pred EEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceec--CCCCccccceeEcCCCCeEEEEec
Q 005093 203 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 203 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--t~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
++... ....|++++. + ++...+ ...........++++|+ |++...
T Consensus 118 ~v~~~--------------~~~~i~~~~~-----------------~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~ 164 (300)
T 2qc5_A 118 WFTQL--------------NGDRIGKLTA-----------------D-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTEN 164 (300)
T ss_dssp EEEET--------------TTTEEEEECT-----------------T-SCEEEEECSSTTCCEEEEEECTTSS-EEEEET
T ss_pred EEEcc--------------CCCeEEEECC-----------------C-CCEEEccCCCCCCCceeEEECCCCC-EEEEec
Confidence 55431 1236888885 4 444433 22233467788899998 655543
Q ss_pred CCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
.. ..|++++. +++...+. ...... .+..+.+.++|+ +++.... ...|+
T Consensus 165 ~~----------~~i~~~~~-~g~~~~~~-----------~~~~~~-------~~~~i~~d~~g~-l~v~~~~--~~~i~ 212 (300)
T 2qc5_A 165 QN----------NSIGRITN-TGKLEEYP-----------LPTNAA-------APVGITSGNDGA-LWFVEIM--GNKIG 212 (300)
T ss_dssp TT----------TEEEEECT-TCCEEEEE-----------CSSTTC-------CEEEEEECTTSS-EEEEETT--TTEEE
T ss_pred CC----------CeEEEECC-CCcEEEee-----------CCCCCC-------CcceEEECCCCC-EEEEccC--CCEEE
Confidence 22 35888886 33321110 000000 123455677886 6665432 34788
Q ss_pred EEECCCCcEEEecCCCC--CceeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 005093 361 SVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 409 (715)
Q Consensus 361 ~~d~~tg~~~~l~~~~~--~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~ 409 (715)
++|. +++...+..... ......++++++ |++... ....|++++.
T Consensus 213 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~---~~~~i~~~~~ 258 (300)
T 2qc5_A 213 RITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTEW---GANQIGRITN 258 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEET---TTTEEEEECT
T ss_pred EEcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEecc---CCCeEEEECC
Confidence 8998 676665532211 122234455544 554442 2345777665
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.097 Score=54.92 Aligned_cols=158 Identities=9% Similarity=0.126 Sum_probs=88.0
Q ss_pred ccceEEeeCCC--CceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 43 TGASAVVPSPS--GSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 43 ~~~~~~~~Spd--g~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
.....++|+|+ +..|+ +.+.. ..++.+. .++....+....... ..++|+|||+ | |+++...
T Consensus 139 ~~P~gvavd~~s~~g~Ly-v~D~~---~~I~~id~~~g~v~~~~~~~~~P----------~giavd~dG~-l-yVad~~~ 202 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLY-WVGQR---DAFRHVDFVNQYVDIKTTNIGQC----------ADVNFTLNGD-M-VVVDDQS 202 (433)
T ss_dssp SCCCEEEECTTTTTCEEE-EECBT---SCEEEEETTTTEEEEECCCCSCE----------EEEEECTTCC-E-EEEECCS
T ss_pred CCCceEEEccccCCCEEE-EEeCC---CCEEEEECCCCEEEEeecCCCCc----------cEEEECCCCC-E-EEEcCCC
Confidence 44677899995 45554 44442 4688887 466655443311122 6899999999 5 4444221
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce--EeecCCCCCCccceEEEecCCCC
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~--~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
.. ....++.++.+++.. ..+ ..-.....+++.|++..
T Consensus 203 ~~--------------------------------------~~~gv~~~~~~~~~~~~~~~---~~~~~P~giavd~~~G~ 241 (433)
T 4hw6_A 203 SD--------------------------------------TNTGIYLFTRASGFTERLSL---CNARGAKTCAVHPQNGK 241 (433)
T ss_dssp CT--------------------------------------TSEEEEEECGGGTTCCEEEE---EECSSBCCCEECTTTCC
T ss_pred Cc--------------------------------------ccceEEEEECCCCeeccccc---cccCCCCEEEEeCCCCe
Confidence 00 012344444443322 112 11123446788995555
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCC--CccccceeEcCCCCe
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES--ISSAFFPRFSPDGKF 274 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~--~~~~~~~~~spdg~~ 274 (715)
|+++.. .+..|++++. +++.. +.+... ......++|+|||++
T Consensus 242 ----lyv~d~--------------~~~~V~~~d~-----------------~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 242 ----IYYTRY--------------HHAMISSYDP-----------------ATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp ----EEECBT--------------TCSEEEEECT-----------------TTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred ----EEEEEC--------------CCCEEEEEEC-----------------CCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 666542 2347999996 54554 333211 122335899999998
Q ss_pred EEEEecCCCCCCCCccccceeEeeecCC
Q 005093 275 LVFLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
|+++.... ..|++++.+.
T Consensus 287 LYvad~~~----------~~I~~~~~d~ 304 (433)
T 4hw6_A 287 AYIIYNGK----------HCIYRVDYNR 304 (433)
T ss_dssp EEEEETTT----------TEEEEEEBCT
T ss_pred EEEEeCCC----------CEEEEEeCCC
Confidence 88776543 4688877653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.04 Score=52.08 Aligned_cols=177 Identities=13% Similarity=0.203 Sum_probs=98.1
Q ss_pred CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 161 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
.+.|.++|+++|++..-...+.. ....-.+++|++ |+-..|. ...++++|.
T Consensus 42 ~S~v~~vD~~tgkv~~~~~l~~~--~fgeGi~~~~~~----ly~ltw~--------------~~~v~v~D~--------- 92 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAEVPPP--YFGAGIVAWRDR----LIQLTWR--------------NHEGFVYDL--------- 92 (243)
T ss_dssp SCEEEEEETTTCCEEEEEECCTT--CCEEEEEEETTE----EEEEESS--------------SSEEEEEET---------
T ss_pred CceEEEEECCCCCEEEEEeCCCC--cceeEEEEeCCE----EEEEEee--------------CCEEEEEEC---------
Confidence 37899999999987654212222 222334566776 6665542 347999997
Q ss_pred hhhhccCCCCCCc-eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCC-Ccccceeeeeec
Q 005093 241 LELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPV 318 (715)
Q Consensus 241 ~~~~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~ 318 (715)
++.+. .++.-. . ..-..++||++|+ .++.+ ..|+++|..+.+.. .+. +
T Consensus 93 --------~tl~~~~ti~~~-~--~Gwglt~dg~~L~-vSdgs----------~~l~~iDp~t~~~~~~I~--------V 142 (243)
T 3mbr_X 93 --------ATLTPRARFRYP-G--EGWALTSDDSHLY-MSDGT----------AVIRKLDPDTLQQVGSIK--------V 142 (243)
T ss_dssp --------TTTEEEEEEECS-S--CCCEEEECSSCEE-EECSS----------SEEEEECTTTCCEEEEEE--------C
T ss_pred --------CcCcEEEEEeCC-C--CceEEeeCCCEEE-EECCC----------CeEEEEeCCCCeEEEEEE--------E
Confidence 54443 333322 1 2234467888775 45432 36999997774431 111 1
Q ss_pred eecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-------------C-CceeEEE
Q 005093 319 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-------------S-NFSWSLL 384 (715)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-------------~-~~~~~~~ 384 (715)
... ...+ .....+.|. +|+ ||.. .+. ...|.++|+++|++....... . .....++
T Consensus 143 ~~~--g~~~-----~~lNeLe~~-~G~-lyan-vw~-s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~ 211 (243)
T 3mbr_X 143 TAG--GRPL-----DNLNELEWV-NGE-LLAN-VWL-TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAF 211 (243)
T ss_dssp EET--TEEC-----CCEEEEEEE-TTE-EEEE-ETT-TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEE
T ss_pred ccC--Cccc-----ccceeeEEe-CCE-EEEE-ECC-CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEE
Confidence 000 0000 011233454 664 6543 333 358999999999987653311 1 1233567
Q ss_pred eecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 385 TLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 385 s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
++++++|+.+.-.. |.+|.+.+.
T Consensus 212 d~~~~~lfVTGK~w---p~~~~v~~~ 234 (243)
T 3mbr_X 212 DAEHDRLFVTGKRW---PMLYEIRLT 234 (243)
T ss_dssp ETTTTEEEEEETTC---SEEEEEEEC
T ss_pred cCCCCEEEEECCCC---CcEEEEEEe
Confidence 77788888777444 557766654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.12 Score=52.64 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=37.7
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCC---CCeEEEEe
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD---ETLIAYVA 115 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpD---g~~la~~~ 115 (715)
++......++.|||+ | |+.+.. ..++.+. +++...+...+... -+.....++.|+|| +++|++..
T Consensus 29 ~l~~P~~ia~~pdG~-l-~V~e~~---g~I~~i~-~g~~~~~~~~~v~~----~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 29 GLEVPWALAFLPDGG-M-LIAERP---GRIRLFR-EGRLSTYAELSVYH----RGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp CCSCEEEEEECTTSC-E-EEEETT---TEEEEEE-TTEEEEEEECCCCC----STTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCCCceEEEEcCCCe-E-EEEeCC---CeEEEEE-CCCccEeecceEee----cCCCCceeEEECCCCCCCCEEEEEE
Confidence 345578899999997 4 444442 3677666 45544443332000 01123468999999 77776653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.016 Score=58.89 Aligned_cols=69 Identities=9% Similarity=0.181 Sum_probs=38.7
Q ss_pred cccceEEeeCCCCceEEEEecCC--CCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEE
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPE--NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 114 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~ 114 (715)
+..+...+++|+|+ |.++.... .....++.++ .+++..+...++.... .....+..+.++|++..+++.
T Consensus 66 ~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~---~~~~~~~~v~vd~~~g~~yvt 137 (343)
T 2qe8_A 66 FDTVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT---LSNSFVNDLAVDLIHNFVYIS 137 (343)
T ss_dssp CSCEEEEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS---CTTCCCCEEEEETTTTEEEEE
T ss_pred eeEeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc---ccccccceEEEecCCCEEEEE
Confidence 45678889999985 54443210 0134677777 5676555555432110 001123688999987665443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.12 Score=50.75 Aligned_cols=170 Identities=9% Similarity=-0.019 Sum_probs=89.1
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|++++.+ ++...+...........+.+.|+|+ |++... ....|++++.
T Consensus 125 ~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-----l~v~~~--------------~~~~i~~~~~---------- 174 (300)
T 2qc5_A 125 DRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-----LWFTEN--------------QNNSIGRITN---------- 174 (300)
T ss_dssp TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-----EEEEET--------------TTTEEEEECT----------
T ss_pred CeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-----EEEEec--------------CCCeEEEECC----------
Confidence 568888887 6655432011223456778888886 555431 1236888884
Q ss_pred hhhccCCCCCCceecC--CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 242 ELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt--~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
+++...+. ..........++++|+ |++..... ..|++++. ++.......
T Consensus 175 --------~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~----------~~i~~~~~-~g~~~~~~~--------- 225 (300)
T 2qc5_A 175 --------TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMG----------NKIGRITT-TGEISEYDI--------- 225 (300)
T ss_dssp --------TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTT----------TEEEEECT-TCCEEEEEC---------
T ss_pred --------CCcEEEeeCCCCCCCcceEEECCCCC-EEEEccCC----------CEEEEEcC-CCcEEEEEC---------
Confidence 33333332 2223456778899885 65554332 25888886 322211100
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC--CCceeEEEeecCCEEEEEEeC
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSS 397 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~--~~~~~~~~s~~~~~l~~~~~~ 397 (715)
.... ..+..+.+.++|+ |++... +...|+++|+ +++...+.... .......++++|. +++.. .
T Consensus 226 --~~~~-------~~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~-~ 290 (300)
T 2qc5_A 226 --PTPN-------ARPHAITAGKNSE-IWFTEW--GANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGS-VWFAL-K 290 (300)
T ss_dssp --SSTT-------CCEEEEEECSTTC-EEEEET--TTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSC-EEEEC-S
T ss_pred --CCCC-------CCceEEEECCCCC-EEEecc--CCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCC-EEEEc-c
Confidence 0000 0123456778887 666543 2357888998 56666553321 1222234455544 44432 2
Q ss_pred CCCCCeEEEEee
Q 005093 398 PVDVPQVKYGYF 409 (715)
Q Consensus 398 ~~~p~~l~~~~~ 409 (715)
. .|+++++
T Consensus 291 --~--~i~~~~p 298 (300)
T 2qc5_A 291 --C--KIGKLNL 298 (300)
T ss_dssp --S--EEEEEEE
T ss_pred --C--ceEEeCC
Confidence 2 6777664
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.021 Score=60.14 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=54.2
Q ss_pred ceEEEEEccCCceE----eecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 162 PSLFVININSGEVQ----AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 162 ~~l~~~~~~~g~~~----~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
..|.+||+.+++.. .+ ......+..+.| +++. |+..+ .+..|.++|+
T Consensus 233 g~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~--~~~~----l~s~~---------------~dg~i~vwd~------ 283 (435)
T 1p22_A 233 RSIAVWDMASPTDITLRRVL--VGHRAAVNVVDF--DDKY----IVSAS---------------GDRTIKVWNT------ 283 (435)
T ss_dssp SCEEEEECSSSSCCEEEEEE--CCCSSCEEEEEE--ETTE----EEEEE---------------TTSEEEEEET------
T ss_pred CcEEEEeCCCCCCceeeeEe--cCCCCcEEEEEe--CCCE----EEEEe---------------CCCeEEEEEC------
Confidence 56899999877643 22 222334555566 6775 55543 2346888887
Q ss_pred hhhhhhhccCCCCCC-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCC
Q 005093 238 ASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 304 (715)
Q Consensus 238 ~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~ 304 (715)
.+++ ...+......+....| +++.|+..+.+. .|.++|+.++.
T Consensus 284 -----------~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg-----------~i~iwd~~~~~ 327 (435)
T 1p22_A 284 -----------STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN-----------TIRLWDIECGA 327 (435)
T ss_dssp -----------TTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS-----------CEEEEETTTCC
T ss_pred -----------CcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC-----------eEEEEECCCCC
Confidence 4443 3445555555666666 567776665442 48888987754
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.023 Score=55.66 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=96.0
Q ss_pred cCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 160 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 160 ~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
....|+++|.++|+...-...........+.++|||+ |+++.. ..|+.+|.
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-----ilvs~~----------------~~V~~~d~-------- 63 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-----ILFSYS----------------KGAKMITR-------- 63 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-----EEEECB----------------SEEEEECT--------
T ss_pred CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-----EEEeCC----------------CCEEEECC--------
Confidence 4588999999888765432122113466788999998 444321 24667773
Q ss_pred hhhhhccCCCCCCceecCCCC-ccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeec
Q 005093 240 ELELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 318 (715)
Q Consensus 240 ~~~~~~~~~~~~~~~~lt~~~-~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~ 318 (715)
.+.....+..+. .....+.++|||+.|+-.+.. ...|+.++.+++....+. +
T Consensus 64 ---------~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~----------~~~v~~vd~~Gk~l~~~~--------~ 116 (276)
T 3no2_A 64 ---------DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH----------PSTILEVNMKGEVLSKTE--------F 116 (276)
T ss_dssp ---------TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST----------TEEEEEECTTSCEEEEEE--------E
T ss_pred ---------CCCEEEEEcCCCCccccccEECCCCCEEEEecCC----------CCEEEEEeCCCCEEEEEe--------c
Confidence 333333333321 245678899999977654431 134777765332111110 0
Q ss_pred eecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-CCCCceeEEEeecCCEEEEEEeC
Q 005093 319 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSS 397 (715)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~~~~~l~~~~~~ 397 (715)
. ....+.+ .....+...+||+.++ +.. ....++.+|.+ |+...-.. ....++ ....++++.++. ...
T Consensus 117 ---~--~~~~~~~-~~~~~v~~~~~G~~lv-~~~--~~~~v~~~d~~-G~~~w~~~~~~~~~~-~~~~~~g~~~v~-~~~ 184 (276)
T 3no2_A 117 ---E--TGIERPH-AQFRQINKNKKGNYLV-PLF--ATSEVREIAPN-GQLLNSVKLSGTPFS-SAFLDNGDCLVA-CGD 184 (276)
T ss_dssp ---C--CSCSSGG-GSCSCCEECTTSCEEE-EET--TTTEEEEECTT-SCEEEEEECSSCCCE-EEECTTSCEEEE-CBT
T ss_pred ---c--CCCCccc-ccccCceECCCCCEEE-Eec--CCCEEEEECCC-CCEEEEEECCCCccc-eeEcCCCCEEEE-eCC
Confidence 0 0000000 0133455788998554 332 34579999997 66554433 222222 344455555543 322
Q ss_pred CCCCCeEEEEeecccC
Q 005093 398 PVDVPQVKYGYFVDKA 413 (715)
Q Consensus 398 ~~~p~~l~~~~~~~~~ 413 (715)
..+|+.++..+++
T Consensus 185 ---~~~v~~~d~~tG~ 197 (276)
T 3no2_A 185 ---AHCFVQLNLESNR 197 (276)
T ss_dssp ---TSEEEEECTTTCC
T ss_pred ---CCeEEEEeCcCCc
Confidence 2458888866553
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.027 Score=53.83 Aligned_cols=175 Identities=13% Similarity=0.024 Sum_probs=95.3
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
.+|.++|+++|++..-. .+.. ...--.+++|++ |+...|. ...++++|.
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~--~FgeGit~~g~~----Ly~ltw~--------------~~~v~V~D~---------- 123 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGN--IFAEGLASDGER----LYQLTWT--------------EGLLFTWSG---------- 123 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTT--CCEEEEEECSSC----EEEEESS--------------SCEEEEEET----------
T ss_pred CEEEEEECCCCcEEeEE-CCCC--cceeEEEEeCCE----EEEEEcc--------------CCEEEEEEC----------
Confidence 44999999999865531 1221 112235778888 7776642 247999997
Q ss_pred hhhccCCCCCCc-eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 242 ELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 242 ~~~~~~~~~~~~-~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
++.+. .++.-. . ..-..++||++|+ .++.+ ..|+++|..+.+... .+++..
T Consensus 124 -------~Tl~~~~ti~~~-~--eGwGLt~Dg~~L~-vSdGs----------~~l~~iDp~T~~v~~-------~I~V~~ 175 (268)
T 3nok_A 124 -------MPPQRERTTRYS-G--EGWGLCYWNGKLV-RSDGG----------TMLTFHEPDGFALVG-------AVQVKL 175 (268)
T ss_dssp -------TTTEEEEEEECS-S--CCCCEEEETTEEE-EECSS----------SEEEEECTTTCCEEE-------EEECEE
T ss_pred -------CcCcEEEEEeCC-C--ceeEEecCCCEEE-EECCC----------CEEEEEcCCCCeEEE-------EEEeCC
Confidence 54443 333322 1 1234457898775 44432 369999977754311 011100
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC--------------CCceeEEEee
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--------------SNFSWSLLTL 386 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~--------------~~~~~~~~s~ 386 (715)
. ...+ .....+.|. || .||... +. ...|.+||+++|++.....-. ......++++
T Consensus 176 ~--g~~v-----~~lNeLe~~-dG-~lyanv-w~-s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp 244 (268)
T 3nok_A 176 R--GQPV-----ELINELECA-NG-VIYANI-WH-SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP 244 (268)
T ss_dssp T--TEEC-----CCEEEEEEE-TT-EEEEEE-TT-CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred C--Cccc-----ccccccEEe-CC-EEEEEE-CC-CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence 0 0000 011234565 77 466443 32 358999999999987653321 1123356677
Q ss_pred cCCEEEEEEeCCCCCCeEEEEee
Q 005093 387 DGDNIIAVSSSPVDVPQVKYGYF 409 (715)
Q Consensus 387 ~~~~l~~~~~~~~~p~~l~~~~~ 409 (715)
++++|+.+.-.+ |.+|.+.+
T Consensus 245 ~~~rlfVTGK~W---p~~~ev~~ 264 (268)
T 3nok_A 245 GSGRIFMTGKLW---PRLFEVRL 264 (268)
T ss_dssp TTCCEEEEETTC---SEEEEEEE
T ss_pred CCCEEEEeCCCC---CceEEEEE
Confidence 777777765433 44655443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.019 Score=60.31 Aligned_cols=160 Identities=15% Similarity=0.268 Sum_probs=93.5
Q ss_pred cccceEEeeCC-CCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCC
Q 005093 42 MTGASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 119 (715)
Q Consensus 42 ~~~~~~~~~Sp-dg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~ 119 (715)
+.....++++| ++..|+++ +.+ ..++.+. .++....+....... ..++|+++|++|++.-...
T Consensus 136 ~~~P~~lavdp~~~g~Lyv~-d~~---~~I~~id~~~~~v~~~~~~~~~P----------~~ia~d~~G~~lyvad~~~- 200 (430)
T 3tc9_A 136 FGGAVWLSFDPKNHNHLYLV-GEQ---HPTRLIDFEKEYVSTVYSGLSKV----------RTICWTHEADSMIITNDQN- 200 (430)
T ss_dssp CSCCCEEEEETTEEEEEEEE-EBT---EEEEEEETTTTEEEEEECCCSCE----------EEEEECTTSSEEEEEECCS-
T ss_pred CCCCCEEEECCCCCCeEEEE-eCC---CcEEEEECCCCEEEEEecCCCCc----------ceEEEeCCCCEEEEEeCCC-
Confidence 44567889999 56666555 432 4677777 454554444321222 6899999999776643211
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce--EeecCCCCCCccceEEEecCCCC
Q 005093 120 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~--~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
+. ....+++++.+++-. +.+ . .-.....++++|++..
T Consensus 201 ---------------------------------~~-----~~~~v~~~~~~g~~~~~~~l--~-~~~~p~giavdp~~g~ 239 (430)
T 3tc9_A 201 ---------------------------------NN-----DRPNNYILTRESGFKVITEL--T-KGQNCNGAETHPINGE 239 (430)
T ss_dssp ---------------------------------CT-----TSEEEEEEEGGGTSCSEEEE--E-ECSSCCCEEECTTTCC
T ss_pred ---------------------------------Cc-----ccceEEEEeCCCceeeeeee--c-cCCCceEEEEeCCCCE
Confidence 00 113456666554332 222 1 1123456789996555
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC--CCccccceeEcCCCCeE
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE--SISSAFFPRFSPDGKFL 275 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~--~~~~~~~~~~spdg~~l 275 (715)
|+++.. ....|++++. .++....+.. .......++|+|||++|
T Consensus 240 ----lyv~d~--------------~~~~V~~~~~-----------------~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 240 ----LYFNSW--------------NAGQVFRYDF-----------------TTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp ----EEEEET--------------TTTEEEEEET-----------------TTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred ----EEEEEC--------------CCCEEEEEEC-----------------CCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 777642 2347999996 5554423321 12346679999999988
Q ss_pred EEEecCCCCCCCCccccceeEeeecCC
Q 005093 276 VFLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
+++.... ..|++++.+.
T Consensus 285 yv~d~~~----------~~I~~~~~d~ 301 (430)
T 3tc9_A 285 YIVVVNQ----------HYILRSDYDW 301 (430)
T ss_dssp EEEETTT----------TEEEEEEEET
T ss_pred EEEECCC----------CEEEEEeCCc
Confidence 8776543 4588877654
|
| >1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A 1ein_A* 1dte_A 4dyh_A* 4ea6_A 1gt6_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0032 Score=61.41 Aligned_cols=112 Identities=12% Similarity=0.129 Sum_probs=70.8
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEE-EcCCCCCCCch-hhhhcCCCCCCccc
Q 005093 463 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLI-VNYRGSLGFGE-EALQSLPGKVGSQD 540 (715)
Q Consensus 463 ~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~-~d~rG~~~~g~-~~~~~~~~~~~~~~ 540 (715)
..+.++++.+. .+.-+||.+||.. . ..+.+.+.++.+.. .|.++.. ... -+... ....
T Consensus 61 ~~~~~~v~~~~-----~~~~iVva~RGT~------~---~~d~l~d~~~~~~~~~~~~~~~-~vh~Gf~~~-----~~~~ 120 (269)
T 1tib_A 61 GDVTGFLALDN-----TNKLIVLSFRGSR------S---IENWIGNLNFDLKEINDICSGC-RGHDGFTSS-----WRSV 120 (269)
T ss_dssp TTEEEEEEEET-----TTTEEEEEECCCS------C---THHHHTCCCCCEEECTTTSTTC-EEEHHHHHH-----HHHH
T ss_pred cCcEEEEEEEC-----CCCEEEEEEeCCC------C---HHHHHHhcCeeeeecCCCCCCC-EecHHHHHH-----HHHH
Confidence 45778888764 2457888999943 1 24667788888776 4555311 000 01000 0112
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC---ceeEEEecCCcch
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCN 596 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~~~~~ 596 (715)
.+++.+.++.+.++. ...++.++||||||.+|..++..... .+.+....+|.+.
T Consensus 121 ~~~~~~~~~~~~~~~--~~~~i~l~GHSLGGalA~l~a~~l~~~~~~~~~~tfg~P~vg 177 (269)
T 1tib_A 121 ADTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRVG 177 (269)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHTTSSSCEEEEEESCCCCB
T ss_pred HHHHHHHHHHHHHHC--CCceEEEecCChHHHHHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 456777777776653 23589999999999999998876542 3777777777653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 715 | ||||
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 1e-20 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 3e-18 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 9e-16 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 3e-15 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 1e-13 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 1e-12 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 1e-12 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 2e-12 | |
| d1ufoa_ | 238 | c.69.1.27 (A:) Hypothetical protein TT1662 {Thermu | 5e-11 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 7e-11 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 1e-10 | |
| d1jjia_ | 311 | c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeogl | 2e-10 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 4e-10 | |
| d1lzla_ | 317 | c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [Ta | 2e-08 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 9e-08 | |
| d1qlwa_ | 318 | c.69.1.15 (A:) A novel bacterial esterase {Alcalig | 1e-07 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 2e-07 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 1e-06 | |
| d1jkma_ | 358 | c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, | 2e-06 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 5e-06 | |
| d1u4na_ | 308 | c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus a | 8e-06 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 2e-05 | |
| d1tcaa_ | 317 | c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Cand | 3e-05 | |
| d1tqha_ | 242 | c.69.1.29 (A:) Carboxylesterase Est {Bacillus stea | 4e-05 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 6e-05 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 8e-05 | |
| d2h1ia1 | 202 | c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cer | 2e-04 | |
| d3b5ea1 | 209 | c.69.1.14 (A:7-215) Uncharacterized protein Mll837 | 3e-04 | |
| d2r8ba1 | 203 | c.69.1.14 (A:44-246) Uncharacterized protein Atu24 | 4e-04 | |
| d1jfra_ | 260 | c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [Ta | 5e-04 |
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.8 bits (221), Expect = 1e-20
Identities = 32/237 (13%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 482 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538
PL++V+ G P S S++ S +SS G ++ + RGS G + L + ++G
Sbjct: 32 PLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGL 91
Query: 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
+ D + A+ ++ + ++V V G +GG+L+T+++ + +
Sbjct: 92 LEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPI 151
Query: 599 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 658
++ + ++ + +
Sbjct: 152 TDFKLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPT-----------A 200
Query: 659 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
D ++ + + L + ++P++ H + +I +F + +
Sbjct: 201 DEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 257
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 84.4 bits (207), Expect = 3e-18
Identities = 34/253 (13%), Positives = 69/253 (27%), Gaps = 36/253 (14%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR---------------------G 520
P +V G + F S+GY +++ R
Sbjct: 83 PCVVQYIGYNGG---RGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQ 139
Query: 521 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 580
GF + + D + A++ + ++ + GGS GG + +
Sbjct: 140 YPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSAL 199
Query: 581 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 640
+ LC+ V D + + ++ +D +
Sbjct: 200 SKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVN--- 256
Query: 641 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 700
++ K P +F +G D P S ++ ++P + H
Sbjct: 257 --FAARAKIPALFSVGLMDNICPPSTVFAAYNYY---AGPKEIRIYPYNNHEGGGSFQAV 311
Query: 701 ESFLNIGLWFKKY 713
E + KK
Sbjct: 312 EQV----KFLKKL 320
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 75.6 bits (184), Expect = 9e-16
Identities = 38/234 (16%), Positives = 89/234 (38%), Gaps = 16/234 (6%)
Query: 482 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538
PL++ ++ GP S + + S+ + + RGS G++ + ++ ++G+
Sbjct: 33 PLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGT 92
Query: 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
+V D + A MG + ++ + G S+GG++T+ ++G F A P+
Sbjct: 93 FEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWE 152
Query: 599 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 658
+ +S + + + + G
Sbjct: 153 YYDSVYTERYMGLPTPEDNLDH-------------YRNSTVMSRAENFKQVEYLLIHGTA 199
Query: 659 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712
D V Q ++AL + GV+ + + + ++ HGI + + ++ + K+
Sbjct: 200 DDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ 253
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 75.2 bits (183), Expect = 3e-15
Identities = 43/248 (17%), Positives = 80/248 (32%), Gaps = 27/248 (10%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 537
P IV HG S + + GY+ + RG + ++ +G
Sbjct: 83 PAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTK 140
Query: 538 ----------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 587
D + A++ + + +++ V GGS GG LT + A
Sbjct: 141 GILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAA 200
Query: 588 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV 647
A L N + + + S+ + TE +++ L+ F ++ +V
Sbjct: 201 VADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFD---IMNLADRV 257
Query: 648 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 707
K P + +G D P S L + ++ V+ H
Sbjct: 258 KVPVLMSIGLIDKVTPPSTVFAAYNHL---ETKKELKVYRYFGHEYIPAFQT-----EKL 309
Query: 708 LWFKKYCK 715
+FK+ K
Sbjct: 310 AFFKQILK 317
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 69.8 bits (169), Expect = 1e-13
Identities = 33/242 (13%), Positives = 57/242 (23%), Gaps = 11/242 (4%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
P + +GG + +YS S +L V G E Q+
Sbjct: 37 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 96
Query: 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 601
D + K + G G L L
Sbjct: 97 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKF 156
Query: 602 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 661
I + S K F H+ + L D R
Sbjct: 157 HKYTIGHAWTTDYGCSDSKQHFEWLIKYSP---LHNVKLPEADDIQYPSMLLLTADHDDR 213
Query: 662 VPVSNGLQYARALREKGVETK-------VIVFPNDVHGIERPQSD-FESFLNIGLWFKKY 713
V + L++ L+ ++ + V HG +P + E ++ + +
Sbjct: 214 VVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARC 273
Query: 714 CK 715
Sbjct: 274 LN 275
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 67.0 bits (163), Expect = 1e-12
Identities = 20/150 (13%), Positives = 36/150 (24%), Gaps = 15/150 (10%)
Query: 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE--S 614
NP+ V+V G + GG++ L D F P C
Sbjct: 8 VNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAG-----------GPYDCARNQYY 56
Query: 615 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 674
+ + ++ + S + + G+ D V + Q L
Sbjct: 57 TSCMYNGYPSITTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQL 116
Query: 675 REK--GVETKVIVFPNDVHGIERPQSDFES 702
+ VH +
Sbjct: 117 GNFDNSANVSYVTTTGAVHTFPTDFNGAGD 146
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 66.2 bits (160), Expect = 1e-12
Identities = 26/231 (11%), Positives = 50/231 (21%), Gaps = 46/231 (19%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
P++ +L G L ++ V Y+ +L F +
Sbjct: 44 PILYMLDGNAVMDRLDDELLKQ-LSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRK 102
Query: 542 ND--------------------VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA 581
D V + + + G S+GG +
Sbjct: 103 TDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSS 162
Query: 582 PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 641
+ + +P + + ++
Sbjct: 163 SYFR-SYYSASPSLGRGYDALLSRVTAVEPLQ------------------------FCTK 197
Query: 642 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692
+ T +S L++KGV FPN HG
Sbjct: 198 HLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDKGVNAVFWDFPNLGHG 248
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 65.7 bits (158), Expect = 2e-12
Identities = 50/234 (21%), Positives = 92/234 (39%), Gaps = 14/234 (5%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
P +V++HGGP + S+ A L++ G+ +++ NYRGS G+GEE + G ++
Sbjct: 40 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 99
Query: 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 601
DV A + GLA+ + + P F A A + + M
Sbjct: 100 EDVSAAARWARESGLASELYIMGYSYGGYMT--LCALTMKPGLFKAGVAGASVVDWEEMY 157
Query: 602 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 661
+D ++E ++ S+SPI+H+ ++K P + D R
Sbjct: 158 ELSDAAFRNFIEQLTGGSRE------------IMRSRSPINHVDRIKEPLALIHPQNDSR 205
Query: 662 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
P+ L+ L +G + + P+ H I + + L + +
Sbjct: 206 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQRE 259
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Score = 61.3 bits (147), Expect = 5e-11
Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 34/238 (14%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
L++ LHG S L + G+ LL + S + +
Sbjct: 25 ALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVY 82
Query: 542 NDVLT----AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 597
L A + + + GGS G F+ L+ + A +
Sbjct: 83 RVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPM 142
Query: 598 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 657
L G + + + P + L G+
Sbjct: 143 KLPQGQVVEDPGVL---------------------ALYQAPPATRGEAYGGVPLLHLHGS 181
Query: 658 QDLRVPVSNGLQYARALREKGVETKV--IVFPNDVHGIERPQSDFESFLNIGLWFKKY 713
+D VP++ + ALR E ++ V H + + + +
Sbjct: 182 RDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTP-----LMARVGLAFLEHW 234
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 61.9 bits (149), Expect = 7e-11
Identities = 24/233 (10%), Positives = 60/233 (25%), Gaps = 22/233 (9%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
I++ G + ++ +LS+ G+ + + +G ++ G +
Sbjct: 33 NTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSL 90
Query: 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA---------RN 592
V + + ++ S + +I F+ A
Sbjct: 91 CTVYHWLQTK------GTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRDTLEK 144
Query: 593 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 652
L L + ++P+ E + + + S + ++ P I
Sbjct: 145 ALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHH---WDTLDSTLDKVANTSVPLI 201
Query: 653 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLN 705
D V + + K+ H + +F
Sbjct: 202 AFTANNDDWVKQEEVYDMLAHI--RTGHCKLYSLLGSSHDLGENLVVLRNFYQ 252
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 61.9 bits (149), Expect = 1e-10
Identities = 33/277 (11%), Positives = 71/277 (25%), Gaps = 50/277 (18%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
+ ++ P+ + + + G++ + V G+ Q +
Sbjct: 108 KELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGF-----QTSGDYQQI 162
Query: 542 NDVLTAIDHVIDMGLANPS--------------KVTVVGGSHGGFLTTHLIGQAPDKFVA 587
+ ID + A S KV + G S+ G + +
Sbjct: 163 YSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLEL 222
Query: 588 AAARNPLCNLALMV---GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR---------- 634
A + + G P E +++ + D +
Sbjct: 223 ILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLA 282
Query: 635 ----------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 678
+H ++ + + KVK + + G QD V + +AL +G
Sbjct: 283 EMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALP-EG 341
Query: 679 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715
+ H + I +F
Sbjct: 342 HAKHAFLHRGA-HIYMNSWQSIDFSETINAYFVAKLL 377
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 60.1 bits (144), Expect = 2e-10
Identities = 40/217 (18%), Positives = 69/217 (31%), Gaps = 16/217 (7%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539
P++V HGG + +L + +++ V+YR + P V
Sbjct: 80 PVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEH------KFPAAV--Y 131
Query: 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599
D D + + +PSK+ V G S GG L + A D L +
Sbjct: 132 DCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVV 191
Query: 600 MVGTTDIPDWCYVESYGSKGKDSFTES----PSVEDLTRFHSKSPISHISKVKTPTIFLL 655
+ E + + S E+ S I + P + +
Sbjct: 192 NFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIIT 251
Query: 656 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692
D G + + LR GVE ++ + +HG
Sbjct: 252 AEYD--PLRDEGEVFGQMLRRAGVEASIVRYRGVLHG 286
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 59.2 bits (142), Expect = 4e-10
Identities = 33/228 (14%), Positives = 58/228 (25%), Gaps = 22/228 (9%)
Query: 482 PLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFG---EEALQSLPGK 535
P + +L G S + + + G S+++ S + + A +
Sbjct: 35 PALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQ 94
Query: 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595
+ + P+ VVG S L P +FV A A + L
Sbjct: 95 TYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLL 154
Query: 596 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL 655
+ + +G T + G R + + T
Sbjct: 155 DPSQAMGPTL--IGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYC 212
Query: 656 GAQDLRVPVSNGL--------------QYARALREKGVETKVIVFPND 689
G N L ++ A G V FP+
Sbjct: 213 GNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDS 260
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Score = 54.1 bits (128), Expect = 2e-08
Identities = 34/144 (23%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT--------DIPD 608
+PS++ V G S GG L + +A D+ V A L L D P
Sbjct: 148 IDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTNFVDTPL 207
Query: 609 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 668
W + S ED +P P +L +L G+
Sbjct: 208 WHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTM-ELDPLRDEGI 266
Query: 669 QYARALREKGVETKVIVFPNDVHG 692
+YA L + GV ++ FP HG
Sbjct: 267 EYALRLLQAGVSVELHSFPGTFHG 290
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 9e-08
Identities = 21/229 (9%), Positives = 57/229 (24%), Gaps = 30/229 (13%)
Query: 481 DPLIVVLHGG------PHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLP 533
++ +HGG + + ++ + + Y + P
Sbjct: 31 REAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEY-----------RLSP 79
Query: 534 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 593
+++ D ++ I ++ + + +VG S G ++ D +
Sbjct: 80 EITNPRNLYDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQL 137
Query: 594 LCNLALMVGTTDIPDWC----------YVESYGSKGKDSFTESPSVEDLTRFHSKSPISH 643
L + Y E E+
Sbjct: 138 QMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKA 197
Query: 644 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692
+S+ + D + + L++ + K+ + +H
Sbjct: 198 LSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 246
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 27/235 (11%), Positives = 55/235 (23%), Gaps = 25/235 (10%)
Query: 482 PLIVVLHGGPHSVS-----LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536
I ++HG + + GYS +++ G + K+
Sbjct: 59 YPITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKL 118
Query: 537 GSQDVNDVLTAIDH-----VIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 591
G + L + + P + + Q +
Sbjct: 119 G-KAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMP 177
Query: 592 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-------FHSKSPISHI 644
P +A + D + S+ G F + P
Sbjct: 178 TPNPTVANLSKLAIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVK 237
Query: 645 SKVKTPTIFLLGAQDLRVPVSNGL-----QYARALREKGVETKVIVFPNDVHGIE 694
P + + G P + AL G + +++ P G+
Sbjct: 238 PLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPA--LGVH 290
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 50.3 bits (119), Expect = 2e-07
Identities = 27/207 (13%), Positives = 47/207 (22%), Gaps = 30/207 (14%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 540
PL V+L G + S+ L L+ V LP
Sbjct: 45 PLAVLLDGEFWAQSMPV-WPVLTSLTHRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLA 103
Query: 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 600
V L + VI + V G S GG + P++F +++
Sbjct: 104 VQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHR 163
Query: 601 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 660
G + + +S + G ++
Sbjct: 164 GGQQEGVLLEKL---------------------------KAGEVSAEGLRIVLEAGIREP 196
Query: 661 RVPVSNGLQYARALREKGVETKVIVFP 687
+ +N L
Sbjct: 197 MIMRAN-QALYAQLHPIKESIFWRQVD 222
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 48.6 bits (114), Expect = 1e-06
Identities = 15/140 (10%), Positives = 36/140 (25%), Gaps = 11/140 (7%)
Query: 463 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL 522
+ + + + + GY + + RG
Sbjct: 52 RNAPILLTRTPYNAKGR------ANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKY 105
Query: 523 GFGEE-----ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 577
G + + + D +D ++ + +V + G S+ GF
Sbjct: 106 GSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMA 165
Query: 578 IGQAPDKFVAAAARNPLCNL 597
+ AA +P+ +
Sbjct: 166 LLDPHPALKVAAPESPMVDG 185
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} Length = 358 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Score = 48.3 bits (113), Expect = 2e-06
Identities = 21/142 (14%), Positives = 36/142 (25%), Gaps = 17/142 (11%)
Query: 566 GGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTE 625
G S GG L A + A ++ + G + S ++
Sbjct: 188 GESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRLTELPSLVENDGYF 247
Query: 626 SPSV---------------EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 670
+ + + P + + D G+ +
Sbjct: 248 IENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELD--PLRDEGIAF 305
Query: 671 ARALREKGVETKVIVFPNDVHG 692
AR L GV+ V VHG
Sbjct: 306 ARRLARAGVDVAARVNIGLVHG 327
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 47.1 bits (110), Expect = 5e-06
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 14/130 (10%)
Query: 482 PLIVVLH----GGPHSVSLSSYSKSL-----AFLSSVGYSLLIVNYRGSLGFGEE----- 527
P+++ G S + K L GY + + RG G +
Sbjct: 51 PIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTR 110
Query: 528 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 587
L+ D ID ++ + KV ++G S+ GF +
Sbjct: 111 PLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKV 170
Query: 588 AAARNPLCNL 597
A +P+ +
Sbjct: 171 AVPESPMIDG 180
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Score = 46.0 bits (107), Expect = 8e-06
Identities = 35/186 (18%), Positives = 60/186 (32%), Gaps = 14/186 (7%)
Query: 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
+D D L I +P+++ V G S GG L A ++ A A L +
Sbjct: 124 EDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPS 183
Query: 599 LMVGTTDIPDWCYVESYGSKGKDSFTES------PSVEDLTRFHSKSPISHISKVKTPTI 652
P + G + S+E+LT + P
Sbjct: 184 TGYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAY 243
Query: 653 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER-----PQSDFESFLNIG 707
D G YA AL + GV+ ++ F + +HG + P + ++ + I
Sbjct: 244 IATAQYD--PLRDVGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGAT-KALVRIA 300
Query: 708 LWFKKY 713
+
Sbjct: 301 EKLRDA 306
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 44.5 bits (104), Expect = 2e-05
Identities = 27/223 (12%), Positives = 60/223 (26%), Gaps = 20/223 (8%)
Query: 481 DPLIVVLHG---GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537
+ +L GP + + ++ L+ G S++ G+ Q +
Sbjct: 27 PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPA-GGAYSMYTNWEQDGSKQWD 85
Query: 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 597
+ ++ D + P VG + GG+ L PD+F A + +
Sbjct: 86 TFLSAEL---PDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYP 142
Query: 598 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 657
+ ++ +G + +P + S +++ T
Sbjct: 143 SNTTTNG--AIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPT 200
Query: 658 QDLRVPVSNGL-----------QYARALREKGVETKVIVFPND 689
+ + + R G FP
Sbjct: 201 NPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHNGHFDFPAS 243
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Score = 44.3 bits (104), Expect = 3e-05
Identities = 27/203 (13%), Positives = 54/203 (26%), Gaps = 34/203 (16%)
Query: 484 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 543
I+++ G + S S + + +GY+ ++ + +
Sbjct: 34 ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPF-MLND----------TQVNTEY 82
Query: 544 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD------KFVAAAARNPLCNL 597
++ AI + N K+ V+ S GG + + P + +A A
Sbjct: 83 MVNAITALYAGSGNN--KLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDY----- 135
Query: 598 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 657
GT + T S L + V T ++ A
Sbjct: 136 ---KGTVLAGPLDALAVSAPSVWQQTTGSALTTALRNAGGLTQ-----IVPTTNLY--SA 185
Query: 658 QDLRVPVSNGLQYARALREKGVE 680
D V + +
Sbjct: 186 TDEIVQPQVSNSPLDSSYLFNGK 208
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Score = 43.3 bits (100), Expect = 4e-05
Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 19/221 (8%)
Query: 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
+ +++LHG + + FL S GY+ Y+G EE V +
Sbjct: 11 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKGHGVPPEE-------LVHTGP 61
Query: 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--------FVAAAARN 592
+ ++ + K+ V G S GG + L P + +
Sbjct: 62 DDWWQDVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEET 121
Query: 593 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 652
+ + E + + + H+ + PT
Sbjct: 122 MYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTF 181
Query: 653 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693
+ D + + + + + + H I
Sbjct: 182 VVQARHDEMINPDSANIIYNEIESPVKQ--IKWYEQSGHVI 220
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.0 bits (100), Expect = 6e-05
Identities = 28/229 (12%), Positives = 55/229 (24%), Gaps = 22/229 (9%)
Query: 481 DPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFG---EEALQSLPG 534
+ +L G + + + G S+++ S + + + +
Sbjct: 29 PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQN 88
Query: 535 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594
+ + +P+ VG S G L P +F AA+ +
Sbjct: 89 YTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGF 148
Query: 595 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 654
N + T + G +S S R I + T
Sbjct: 149 LNPSESWWPT--LIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVY 206
Query: 655 LGAQDLRVPVSNGL--------------QYARALREKGVETKVIVFPND 689
G + + + G V FP +
Sbjct: 207 CGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPN 255
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 42.9 bits (99), Expect = 8e-05
Identities = 20/220 (9%), Positives = 48/220 (21%), Gaps = 29/220 (13%)
Query: 482 PLIVVLHGGPHSVS---------LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 532
+ ++HGG + + + ++ ++ + G + Q
Sbjct: 56 NIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEF 115
Query: 533 PGKVGS-QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 591
V + A A+ G + GG T +++ D
Sbjct: 116 RQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPL 175
Query: 592 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT 651
+ G + + ++ SK + +
Sbjct: 176 SG----DYWYGNSPQDKANSIAEAINRSGL---------------SKREYFVFAATGSED 216
Query: 652 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 691
I + + +V P H
Sbjct: 217 IAYANMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATH 256
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 25/233 (10%), Positives = 60/233 (25%), Gaps = 49/233 (21%)
Query: 482 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ- 539
P++++LHG G + + L ++ + +SV V G F + + +
Sbjct: 15 PVLLLLHGTGGNELDLLPLAEIVDSEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIF 74
Query: 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599
++ +D + + + +G S+G + L+ + A +P+
Sbjct: 75 RTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG 134
Query: 600 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 659
M ++ + D
Sbjct: 135 MQLANLAGKSVFIAAG-----------------------------------------TND 153
Query: 660 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712
+ + L + H + + E W+ K
Sbjct: 154 PICSSAESEELKVLLENANANVTMHWENRG-HQL--TMGEVEKAKE---WYDK 200
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Score = 40.4 bits (93), Expect = 3e-04
Identities = 33/226 (14%), Positives = 58/226 (25%), Gaps = 46/226 (20%)
Query: 482 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNY-RGSLGFGEEALQSLPGKVGSQ 539
+ +LHG G +L ++ +A +++ + + G F K
Sbjct: 24 ECLFLLHGSGVDETTLVPLARRIAPTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILA 83
Query: 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599
+ + N T +G S+G L + L+ P AA P+ L
Sbjct: 84 ETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH 143
Query: 600 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 659
+ T + + GA D
Sbjct: 144 VPATDLAGIRTLI-----------------------------------------IAGAAD 162
Query: 660 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ-SDFESFL 704
L G E + P+ H I P + +L
Sbjct: 163 ETYG-PFVPALVTLLSRHGAEVDARIIPSG-HDIGDPDAAIVRQWL 206
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 40.1 bits (92), Expect = 4e-04
Identities = 33/235 (14%), Positives = 64/235 (27%), Gaps = 53/235 (22%)
Query: 482 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540
PL V+LHG G + L +++ L V G ++ G D
Sbjct: 18 PLFVLLHGTGGDENQFFDFGARLLPQATI---LSPVGDVSEHGAARFFRRTGEGVYDMVD 74
Query: 541 VNDVLTAIDHVIDMGLA--NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 598
+ + I V +G S+G + +++ + P+ F AA +PL
Sbjct: 75 LERATGKMADFIKANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFE 134
Query: 599 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 658
+ + + +
Sbjct: 135 PKISPAKPTRRVLITAG-----------------------------------------ER 153
Query: 659 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713
D PV +L+ +G + + P H I + ++ + Y
Sbjct: 154 DPICPVQLTKALEESLKAQGGTVETVWHPGG-HEI--RSGEIDAVRG---FLAAY 202
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Score = 40.4 bits (93), Expect = 5e-04
Identities = 26/237 (10%), Positives = 64/237 (27%), Gaps = 66/237 (27%)
Query: 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541
+V+ G S S + L+S G+ + ++ +L +
Sbjct: 53 GAVVISPGFTAYQS--SIAWLGPRLASQGFVVFTIDTNTTLDQPD------------SRG 98
Query: 542 NDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 597
+L+A+D++ + +++ V+G S GG
Sbjct: 99 RQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGG------------------------GG 134
Query: 598 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 657
+L + + + +++TPT+ +
Sbjct: 135 SLEAAKSRTSLKAAI---------------------PLTGWNTDKTWPELRTPTLVVGAD 173
Query: 658 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL-WFKKY 713
D PV+ + ++ + H + + W K++
Sbjct: 174 GDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTSD--TTIAKYSISWLKRF 228
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 715 | |||
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 100.0 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.97 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.97 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.93 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.92 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.91 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.9 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.89 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.88 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.87 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.87 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.87 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.85 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.85 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.84 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.84 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.83 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.82 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.82 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.82 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.81 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.8 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.8 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.8 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.8 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.79 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.79 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.79 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.79 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.78 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.78 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.78 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.78 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.78 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.77 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.76 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.76 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.76 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.76 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.75 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.75 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.75 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.74 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.74 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.74 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.74 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.73 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.73 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.73 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.73 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.72 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.72 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.72 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.71 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.7 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.7 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.7 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.69 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.69 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.69 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.69 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.68 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.67 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.65 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.64 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.63 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.61 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.56 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.56 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.53 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.49 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.47 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.45 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.45 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 99.44 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.43 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.39 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 99.37 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.32 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.31 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.25 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.25 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 99.24 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 99.23 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.21 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 99.21 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.2 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.19 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.18 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.15 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 99.14 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.14 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 99.09 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 99.08 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.06 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.05 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 99.04 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.04 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.04 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.01 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 99.0 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.98 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.96 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.95 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.95 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.92 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.9 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.89 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.89 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.86 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.84 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.84 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.83 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.79 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.74 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.73 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.71 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.7 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.7 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.69 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.68 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.68 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.65 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.64 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.64 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 98.63 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.59 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.58 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.57 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.55 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.55 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.5 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.49 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.48 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.48 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.42 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.41 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.41 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.35 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.33 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.29 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 98.19 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 98.14 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.12 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 98.08 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.94 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.92 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.87 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.84 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.8 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.77 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.73 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.66 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.66 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.64 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 97.63 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.62 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.55 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.48 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.48 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 97.39 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.32 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 97.16 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.14 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.08 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.01 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.89 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 96.71 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.66 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 96.52 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.36 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.39 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 95.33 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 95.29 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 94.86 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.67 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 94.49 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 92.16 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 91.76 | |
| d1cexa_ | 197 | Cutinase {Fungus (Fusarium solani), subsp. pisi [T | 91.11 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 90.84 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 90.75 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 90.53 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 90.3 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 88.07 | |
| d1qoza_ | 207 | Acetylxylan esterase {Trichoderma reesei [TaxId: 5 | 84.0 | |
| d1g66a_ | 207 | Acetylxylan esterase {Penicillium purpurogenum [Ta | 80.48 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 80.09 |
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=6e-33 Score=274.38 Aligned_cols=244 Identities=23% Similarity=0.357 Sum_probs=207.9
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
.+++.||.+|+++++.|++ ..++.|+||++|||++......|...++.|+++||+|+++|+|+.+++|.++.......
T Consensus 16 ~~~s~dG~~i~~~l~~p~~--~~~~~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~~~g~~~~~~~~~~ 93 (260)
T d2hu7a2 16 WVESFDGSRVPTYVLESGR--APTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGD 93 (260)
T ss_dssp EEECTTSCEEEEEEEEETT--SCSSEEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCSSSCHHHHHTTTTC
T ss_pred EEECCCCCEEEEEEEeCCC--CCCCceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeeccccccccccccccc
Confidence 5677899999999999975 45788999999998887767778888999999999999999999999999988777777
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeecc
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 615 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (715)
++..+++|+.++++++.++. +.++++|+|+|+||.+++.++..+|+.+++++..+|..++..+..........+...
T Consensus 94 ~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (260)
T d2hu7a2 94 PCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQ- 170 (260)
T ss_dssp TTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHTCCHHHHHHHHH-
T ss_pred cchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhccccccccccccc-
Confidence 77778999999999999985 678999999999999999999999999999999999988765543322110000000
Q ss_pred CCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCC
Q 005093 616 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 695 (715)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 695 (715)
......+.+...+|+..++++++|+|++||+.|.+||+.++.+++++|+++++++++++||+++|++..
T Consensus 171 -----------~~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~~ 239 (260)
T d2hu7a2 171 -----------LTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINT 239 (260)
T ss_dssp -----------HHCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSCSHHHHHHHHHHHHTTCCEEEEEETTCCSSCCB
T ss_pred -----------ccccccccccccchhhcccccCCCceeeecccCceecHHHHHHHHHHHHHCCCCeEEEEECcCCCCCCC
Confidence 011345667788999999999999999999999999999999999999999999999999999999988
Q ss_pred CCchHHHHHHHHHHHHHhcC
Q 005093 696 PQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 696 ~~~~~~~~~~i~~wl~~~l~ 715 (715)
.++..+++..+++||.+|||
T Consensus 240 ~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 240 MEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHhc
Confidence 78888899999999999985
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=2.8e-31 Score=262.17 Aligned_cols=246 Identities=17% Similarity=0.302 Sum_probs=201.0
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc---cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 532 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~---~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~ 532 (715)
.+...+|.++.+++++|+++++.+++|+||++|||++..... .+......++++||+|+.+|+||+++++..+....
T Consensus 7 ~~~~~~~~~~~~~l~lP~~~~~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~~~~~~~~~ 86 (258)
T d2bgra2 7 DFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAI 86 (258)
T ss_dssp EEEEETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGG
T ss_pred EEEEeCCcEEEEEEEECCCcCCCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCcchHHHHhh
Confidence 445568999999999999998889999999999975443222 33345556789999999999999998998888888
Q ss_pred CCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceee
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 612 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 612 (715)
..+++..+..++.++++++.++..+|+++|+++|+|+||.+++.++..+|+++++++..++........... ..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 160 (258)
T d2bgra2 87 NRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVY------TE 160 (258)
T ss_dssp TTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHHH------HH
T ss_pred hhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeecccccccccccc------cc
Confidence 888888888999999999999999999999999999999999999999999999998888765433221000 00
Q ss_pred eccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCC-CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 005093 613 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 691 (715)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 691 (715)
...+ ........+.....+|+..+.+++ +|+|++||++|.+||+.++.+++++|+++|+++++++||+++|
T Consensus 161 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~~~~~~~~g~~H 232 (258)
T d2bgra2 161 RYMG--------LPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 232 (258)
T ss_dssp HHHC--------CCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEETTCCT
T ss_pred hhcc--------cccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHHCCCCEEEEEECCCCC
Confidence 0000 011234456677788888888875 7999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhcC
Q 005093 692 GIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
++........+.+.+.+||+++|.
T Consensus 233 ~~~~~~~~~~~~~~i~~fl~~~l~ 256 (258)
T d2bgra2 233 GIASSTAHQHIYTHMSHFIKQCFS 256 (258)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccHHHHHHHHHHHHHHHhc
Confidence 988777777889999999999874
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.3e-32 Score=268.79 Aligned_cols=240 Identities=17% Similarity=0.256 Sum_probs=188.3
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-Cccc--hHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSY--SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~~~--~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
.+|.+|+++++.|+++++++++|+||++|||++... ...| ......|+++||+|+++|+||++++|..+......++
T Consensus 10 ~dg~~l~~~l~~P~~~~~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~~~~ 89 (258)
T d1xfda2 10 IDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRL 89 (258)
T ss_dssp ETTEEECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCT
T ss_pred eCCeEEEEEEEECCCcCCCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhhccc
Confidence 489999999999999888899999999999865432 2233 3456678999999999999999999998888777788
Q ss_pred CccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC----ceeEEEecCCcchhhhhccCCCCCCceee
Q 005093 537 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYV 612 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 612 (715)
+..++.|+.++++++.+++.+|++||+++|+|+||++++.++...++ .+++.+..+++........ ....
T Consensus 90 g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 163 (258)
T d1xfda2 90 GLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYAS------AFSE 163 (258)
T ss_dssp TTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBH------HHHH
T ss_pred hhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecccc------cccc
Confidence 88889999999999999999999999999999999999988776554 5667666666543211100 0000
Q ss_pred eccCCCCCCCCCCCCChhhHHHHHhcCchhhccCC-CCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 005093 613 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 691 (715)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 691 (715)
..++. + ....+.+...++...+.++ ++|+|++||+.|..||++++.+++++|++.+++++++++|+++|
T Consensus 164 ~~~~~---------~-~~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~~~~~~~~p~~~H 233 (258)
T d1xfda2 164 RYLGL---------H-GLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESH 233 (258)
T ss_dssp HHHCC---------C-SSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEETTCCS
T ss_pred ccccc---------c-ccchHHhhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCC
Confidence 00000 0 0111223445566666664 68999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhcC
Q 005093 692 GIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 692 ~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
++........+++.+++||+++||
T Consensus 234 ~~~~~~~~~~~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 234 YFTSSSLKQHLYRSIINFFVECFR 257 (258)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhC
Confidence 998777777788999999999986
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.93 E-value=6.9e-25 Score=218.65 Aligned_cols=250 Identities=20% Similarity=0.212 Sum_probs=186.3
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 534 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~-~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~ 534 (715)
++++.||.+|+++|+.|++++.++++|+||++|||++......+.. ....++..++.++..++++...++.........
T Consensus 11 ~~~s~DG~~i~~~l~~P~~~~~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (280)
T d1qfma2 11 FYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGIL 90 (280)
T ss_dssp EEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTSG
T ss_pred EEECCCCCEEEEEEEEcCCCCCCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeeccccccccccchhhhhcccc
Confidence 5677899999999999999888999999999999988765554433 445667888999999998877666665544444
Q ss_pred CCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeec
Q 005093 535 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 614 (715)
Q Consensus 535 ~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (715)
........+...++.+...+...+...++++|+|.||.++..++...++.+++++...++.++...........+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (280)
T d1qfma2 91 ANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY- 169 (280)
T ss_dssp GGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHH-
T ss_pred cccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhccccccccceecc-
Confidence 4444456666777777777777888999999999999999999999999999999999988765443322221111000
Q ss_pred cCCCCCCCCCCCCChhhHHHHHhcCchh------hccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHc-------CCcE
Q 005093 615 YGSKGKDSFTESPSVEDLTRFHSKSPIS------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK-------GVET 681 (715)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~------~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~-------g~~~ 681 (715)
...............+|.. ......+|+|++||++|.+||+.++++++++|++. |+++
T Consensus 170 ---------~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~~~~~ 240 (280)
T d1qfma2 170 ---------GCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPL 240 (280)
T ss_dssp ---------CCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCE
T ss_pred ---------cCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcCCCcE
Confidence 0011223334444444443 34444568999999999999999999999999654 7789
Q ss_pred EEEEeCCCCccCCCCC-chHHHHHHHHHHHHHhcC
Q 005093 682 KVIVFPNDVHGIERPQ-SDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 682 ~~~~~~~~~H~~~~~~-~~~~~~~~i~~wl~~~l~ 715 (715)
++++++++||++..+. +..+.+.++++||++|||
T Consensus 241 ~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~ 275 (280)
T d1qfma2 241 LIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 275 (280)
T ss_dssp EEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999987653 334667789999999996
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=1.8e-24 Score=219.90 Aligned_cols=242 Identities=18% Similarity=0.176 Sum_probs=168.8
Q ss_pred ccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCC
Q 005093 455 ANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 534 (715)
Q Consensus 455 ~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~ 534 (715)
+++...+|.+|+|+++.|+ ..++.|+||++||++.. ...+...+..|+++||.|+++|+||.+.++.........
T Consensus 59 v~~~~~dg~~i~~~l~~P~---~~~~~P~vv~~HG~~~~--~~~~~~~~~~la~~Gy~vi~~D~rG~G~s~~~~~~~~~~ 133 (318)
T d1l7aa_ 59 LTYKSFGNARITGWYAVPD---KEGPHPAIVKYHGYNAS--YDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGH 133 (318)
T ss_dssp EEEEEGGGEEEEEEEEEES---SCSCEEEEEEECCTTCC--SGGGHHHHHHHHHTTCEEEEECCTTTSSSCCCCCCSSCC
T ss_pred EEEECCCCcEEEEEEEecC---CCCCceEEEEecCCCCC--ccchHHHHHHHHHCCCEEEEEeeCCCCCCCCCcccchhh
Confidence 3566678999999999998 46789999999997655 456777888999999999999999966554432211111
Q ss_pred CCC--------------ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc-hhhh
Q 005093 535 KVG--------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLAL 599 (715)
Q Consensus 535 ~~~--------------~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~-~~~~ 599 (715)
... ...+.|...+++++..++.++.++|+++|+|+||..++.++...+. ++++++..|.. +...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 212 (318)
T d1l7aa_ 134 ALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADYPYLSNFER 212 (318)
T ss_dssp SSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEESCCSCCHHH
T ss_pred hhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcc-cceEEEeccccccHHH
Confidence 110 0124678888999999998999999999999999999999998765 55666555543 2222
Q ss_pred hccCCCCCCceeeeccCCCCCCCCCCCC--ChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHc
Q 005093 600 MVGTTDIPDWCYVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 677 (715)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (715)
.........+.....+.. ..... ...........++...++++++|+|++||++|.+||++++.++++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l--- 284 (318)
T d1l7aa_ 213 AIDVALEQPYLEINSFFR-----RNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHL--- 284 (318)
T ss_dssp HHHHCCSTTTTHHHHHHH-----HSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHC---
T ss_pred Hhhcccccccchhhhhhh-----ccccccccccccccccccccccccccCCCCEEEEEECCCCCcCHHHHHHHHHHc---
Confidence 111110000000000000 00000 01112223445667788899999999999999999999998887776
Q ss_pred CCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 678 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 678 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
+.++++++|++++|.+. .+..+++++||++|||
T Consensus 285 ~~~~~l~~~~~~gH~~~-----~~~~~~~~~fl~~~Lk 317 (318)
T d1l7aa_ 285 ETKKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp CSSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCCc-----HHHHHHHHHHHHHhCC
Confidence 45789999999999754 4678899999999997
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.91 E-value=1e-23 Score=216.83 Aligned_cols=228 Identities=15% Similarity=0.169 Sum_probs=160.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|.+|.++++.|+ ..++.|+||++||.... ...+....+.|+++||.|+++|+|| +|.+.... ......
T Consensus 114 dg~~l~g~l~~P~---~~~~~P~Vi~~hG~~~~--~e~~~~~~~~l~~~G~~vl~~D~~G---~G~s~~~~---~~~~~~ 182 (360)
T d2jbwa1 114 DGIPMPVYVRIPE---GPGPHPAVIMLGGLEST--KEESFQMENLVLDRGMATATFDGPG---QGEMFEYK---RIAGDY 182 (360)
T ss_dssp TTEEEEEEEECCS---SSCCEEEEEEECCSSCC--TTTTHHHHHHHHHTTCEEEEECCTT---SGGGTTTC---CSCSCH
T ss_pred CCcccceEEEecC---CCCCceEEEEeCCCCcc--HHHHHHHHHHHHhcCCEEEEEcccc---ccccCccc---cccccH
Confidence 6789999999997 46789999999996443 3445667888999999999999999 55543211 111112
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCC
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 620 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (715)
..++..+++++.....+|.++|+|+|+||||++++.+|...| +++++|+.+|+.++........ .....+
T Consensus 183 ~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~~~~~~~~~~~----~~~~~~----- 252 (360)
T d2jbwa1 183 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFSDLDYWDLETP----LTKESW----- 252 (360)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCSCSTTGGGSCH----HHHHHH-----
T ss_pred HHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccccHHHHhhhhh----hhhHHH-----
Confidence 345667889999988899999999999999999999998876 6899999998776432211000 000000
Q ss_pred CCCCCCCChhh--HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCc
Q 005093 621 DSFTESPSVED--LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 698 (715)
Q Consensus 621 ~~~~~~~~~~~--~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 698 (715)
........... .......+....+.++++|+|++||++|. +|++++..+++.+.. .+.+++++++++|.... .
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp~~~~~~l~~~~~~--~~~~l~~~~~g~H~~~~--~ 327 (360)
T d2jbwa1 253 KYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPA--EHLNLVVEKDGDHCCHN--L 327 (360)
T ss_dssp HHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCG--GGEEEEEETTCCGGGGG--G
T ss_pred HHhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cCHHHHHHHHHhcCC--CCeEEEEECCCCcCCCc--C
Confidence 00011111111 12233445556788999999999999998 689999999887753 35778899999996532 2
Q ss_pred hHHHHHHHHHHHHHhc
Q 005093 699 DFESFLNIGLWFKKYC 714 (715)
Q Consensus 699 ~~~~~~~i~~wl~~~l 714 (715)
.......+.+||.++|
T Consensus 328 ~~~~~~~i~dWl~~~L 343 (360)
T d2jbwa1 328 GIRPRLEMADWLYDVL 343 (360)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 2356778999999987
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=2.5e-23 Score=211.85 Aligned_cols=243 Identities=13% Similarity=0.136 Sum_probs=167.3
Q ss_pred ccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCC
Q 005093 455 ANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 534 (715)
Q Consensus 455 ~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~ 534 (715)
+++.+.+|.+|+++++.|++ ..++.|+||++||++..... ......++++||.|+++|+||.+..+.........
T Consensus 58 v~~~s~dG~~l~~~l~~P~~--~~~~~P~Vv~~hG~~~~~~~---~~~~~~~a~~G~~v~~~D~rG~G~s~~~~~~~~~~ 132 (322)
T d1vlqa_ 58 VTFSGYRGQRIKGWLLVPKL--EEEKLPCVVQYIGYNGGRGF---PHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYP 132 (322)
T ss_dssp EEEECGGGCEEEEEEEEECC--SCSSEEEEEECCCTTCCCCC---GGGGCHHHHTTCEEEEECCTTCCCSSSCCCCCBCC
T ss_pred EEEECCCCcEEEEEEEeccC--CCCCccEEEEecCCCCCcCc---HHHHHHHHhCCCEEEEeeccccCCCCCCccccccc
Confidence 35667789999999999985 45679999999997665422 22345689999999999999966544332110000
Q ss_pred C---------------------CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCC
Q 005093 535 K---------------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 593 (715)
Q Consensus 535 ~---------------------~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 593 (715)
. .....+.|+.++++++..++.+|.++++++|+|+||.+++.++...+ +++++++.+|
T Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~-~~~a~v~~~~ 211 (322)
T d1vlqa_ 133 EGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KAKALLCDVP 211 (322)
T ss_dssp SSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SCCEEEEESC
T ss_pred cccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-CccEEEEeCC
Confidence 0 00112568889999999998899999999999999999998888754 6888888777
Q ss_pred cchhh-hhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHH
Q 005093 594 LCNLA-LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 672 (715)
Q Consensus 594 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~ 672 (715)
..... ..........+.....+.. ..........+.+...+|...+.++++|+|++||++|.++|++++.++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~~G~~D~~vp~~~~~~~~~ 286 (322)
T d1vlqa_ 212 FLCHFRRAVQLVDTHPYAEITNFLK-----THRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYN 286 (322)
T ss_dssp CSCCHHHHHHHCCCTTHHHHHHHHH-----HCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHH
T ss_pred ccccHHHHHhhccccchhhHHhhhh-----cCcchhhhHHHHhhhhhHHHHHhcCCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence 54322 1111111111100000000 00011123334556678999999999999999999999999998877766
Q ss_pred HHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 673 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 673 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
++ +.++++++||+++|... .....+..++||+++|+
T Consensus 287 ~~---~~~~~l~~~p~~~H~~~----~~~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 287 YY---AGPKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLFE 322 (322)
T ss_dssp HC---CSSEEEEEETTCCTTTT----HHHHHHHHHHHHHHHHC
T ss_pred HC---CCCeEEEEECCCCCCCc----cccCHHHHHHHHHHHhC
Confidence 54 56899999999999653 22334567899999985
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.1e-21 Score=191.83 Aligned_cols=250 Identities=17% Similarity=0.195 Sum_probs=186.1
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGS 92 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 92 (715)
....||++|+++. +.++|+..+ ..+..|+|||||++|||++... +..+++.+. .++...+++......
T Consensus 17 ~~~~l~i~d~dG~--~~~~l~~~~-----~~~~sP~wSPDGk~IAf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--- 85 (269)
T d2hqsa1 17 FPYELRVSDYDGY--NQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN--- 85 (269)
T ss_dssp CCEEEEEEETTSC--SCEEEEEES-----SCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEEEEECCSSCE---
T ss_pred ceEEEEEEcCCCC--CcEEEecCC-----CceeeeEECCCCCEEEEEEeec-cCcceeeeecccCceeEEeeeeccc---
Confidence 3457999776544 568887776 6678999999999999998876 667788888 666666666554443
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 172 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 172 (715)
..+.|||||++|++..... ....+........
T Consensus 86 -------~~~~~spdg~~i~~~~~~~-----------------------------------------~~~~~~~~~~~~~ 117 (269)
T d2hqsa1 86 -------GAPAFSPDGSKLAFALSKT-----------------------------------------GSLNLYVMDLASG 117 (269)
T ss_dssp -------EEEEECTTSSEEEEEECTT-----------------------------------------SSCEEEEEETTTC
T ss_pred -------ccceecCCCCeeeEeeecC-----------------------------------------Cccceeecccccc
Confidence 5889999999999986543 1244555555555
Q ss_pred ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 173 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
..... .........+.|+++++. +++.....+ ..+|+..++ .++.
T Consensus 118 ~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~g------------~~~i~~~~~-----------------~~~~ 162 (269)
T d2hqsa1 118 QIRQV--TDGRSNNTEPTWFPDSQN----LAFTSDQAG------------RPQVYKVNI-----------------NGGA 162 (269)
T ss_dssp CEEEC--CCCSSCEEEEEECTTSSE----EEEEECTTS------------SCEEEEEET-----------------TSSC
T ss_pred cceee--eecccccccccccccccc----ceecccccC------------CceEeeeec-----------------cccc
Confidence 55555 344455567789999998 888764332 247999997 7788
Q ss_pred ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccccc
Q 005093 253 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 332 (715)
Q Consensus 253 ~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~ 332 (715)
...++........|.|||||+.++|.+.+. ....|++++..++..+.+....
T Consensus 163 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~-------------------- 214 (269)
T d2hqsa1 163 PQRITWEGSQNQDADVSSDGKFMVMVSSNG--------GQQHIAKQDLATGGVQVLSSTF-------------------- 214 (269)
T ss_dssp CEECCCSSSEEEEEEECTTSSEEEEEEECS--------SCEEEEEEETTTCCEEECCCSS--------------------
T ss_pred ceeeecccccccccccccccceeEEEeecC--------CceeeeEeecccccceEeecCc--------------------
Confidence 888888888889999999999999999874 3457888987765543222111
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEee
Q 005093 333 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 386 (715)
Q Consensus 333 ~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~ 386 (715)
....+.|||||+.|+|.+..++...||.++++++..++|+...+.+....|||
T Consensus 215 -~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 215 -LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp -SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred -cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence 12345799999999999998889999999999999999998877555556665
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.88 E-value=3.5e-22 Score=195.50 Aligned_cols=190 Identities=14% Similarity=0.108 Sum_probs=148.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhH
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 544 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~ 544 (715)
..+.+|.|.+. .++++|+||++||++.. ...+..+++.|+++||.|+++|+++...... ....|+
T Consensus 37 ~~~~ly~P~~~-~~g~~P~Vv~~HG~~g~--~~~~~~~a~~lA~~Gy~V~~~d~~~~~~~~~------------~~~~d~ 101 (260)
T d1jfra_ 37 GGGTIYYPTST-ADGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQPD------------SRGRQL 101 (260)
T ss_dssp CCEEEEEESCC-TTCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCHH------------HHHHHH
T ss_pred cCEEEEEcCCC-CCCCccEEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeeCCCcCCch------------hhHHHH
Confidence 34778999752 45688999999996654 4456678899999999999999998433211 225788
Q ss_pred HHHHHHHHHc----CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCC
Q 005093 545 LTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 620 (715)
Q Consensus 545 ~~~i~~l~~~----~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (715)
.++++++.+. +.+|.+||+++|||+||.+++.++...+ +++++|.++|....
T Consensus 102 ~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~~~~~----------------------- 157 (260)
T d1jfra_ 102 LSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNTD----------------------- 157 (260)
T ss_dssp HHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCCSC-----------------------
T ss_pred HHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeeccccc-----------------------
Confidence 8899998885 4589999999999999999999998765 68888887774310
Q ss_pred CCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchH
Q 005093 621 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 700 (715)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 700 (715)
....++++|+|++||++|.++|+++..+.+......+.+.+++.+++++|.+....+.
T Consensus 158 ---------------------~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~i~ga~H~~~~~~~~- 215 (260)
T d1jfra_ 158 ---------------------KTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTSDT- 215 (260)
T ss_dssp ---------------------CCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCTTSCEEEEEETTCCTTGGGSCCH-
T ss_pred ---------------------ccccccccceeEEecCCCCCCCHHHHHHHHHHhcccCCCEEEEEECCCccCCCCCChH-
Confidence 1123567899999999999999877555544455567889999999999988766554
Q ss_pred HHHHHHHHHHHHhcC
Q 005093 701 ESFLNIGLWFKKYCK 715 (715)
Q Consensus 701 ~~~~~i~~wl~~~l~ 715 (715)
.+.+.+++||+.||+
T Consensus 216 ~~~~~~~~wl~~~L~ 230 (260)
T d1jfra_ 216 TIAKYSISWLKRFID 230 (260)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc
Confidence 677889999999985
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.87 E-value=2.1e-21 Score=182.00 Aligned_cols=196 Identities=11% Similarity=0.088 Sum_probs=143.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCC---CCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP---HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~---~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
+| ++++.+..|+.. ...+.+++|++|+.+ +++....+...++.|+++||.|+.+||||.+.....+ ...
T Consensus 17 ~G-~l~~~~~~p~~~-~~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~~------~~~ 88 (218)
T d2fuka1 17 VG-PLDVAVDLPEPD-VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGSF------DHG 88 (218)
T ss_dssp TE-EEEEEEECCCTT-SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSCC------CTT
T ss_pred Cc-cEEEEEEcCCCC-CCCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCcc------CcC
Confidence 44 788899988642 344557789999532 2222223456778899999999999999955443221 223
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCC
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 617 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (715)
....+|+.++++++.++. +.++++++|+||||.+++.++.+. .++++|+++|..+...+
T Consensus 89 ~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~~~----------------- 147 (218)
T d2fuka1 89 DGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWDF----------------- 147 (218)
T ss_dssp THHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBCC-----------------
T ss_pred cchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccchhh-----------------
Confidence 345889999999999874 568999999999999999888763 46788988886431100
Q ss_pred CCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCC
Q 005093 618 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 697 (715)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 697 (715)
....+.+|+|++||++|..+|++++.++++++ ..+.+++++++++|.|..
T Consensus 148 -------------------------~~~~~~~P~Lvi~G~~D~~vp~~~~~~l~~~~---~~~~~l~~i~ga~H~f~~-- 197 (218)
T d2fuka1 148 -------------------------SDVQPPAQWLVIQGDADEIVDPQAVYDWLETL---EQQPTLVRMPDTSHFFHR-- 197 (218)
T ss_dssp -------------------------TTCCCCSSEEEEEETTCSSSCHHHHHHHHTTC---SSCCEEEEETTCCTTCTT--
T ss_pred -------------------------hccccccceeeEecCCCcCcCHHHHHHHHHHc---cCCceEEEeCCCCCCCCC--
Confidence 00134579999999999999999888776554 346789999999997753
Q ss_pred chHHHHHHHHHHHHHhcC
Q 005093 698 SDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 698 ~~~~~~~~i~~wl~~~l~ 715 (715)
...+..+.+.+|+++||.
T Consensus 198 ~~~~l~~~~~~~v~~~l~ 215 (218)
T d2fuka1 198 KLIDLRGALQHGVRRWLP 215 (218)
T ss_dssp CHHHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 334678889999999974
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2e-21 Score=206.52 Aligned_cols=323 Identities=15% Similarity=0.111 Sum_probs=197.6
Q ss_pred cceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCc----
Q 005093 13 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ---- 87 (715)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---- 87 (715)
.+...+|++|+.++.. .+|+..... .+....++|||||++|||++++ ++|.+. .++...++|....
T Consensus 88 s~~~~~~i~d~~~~~~--~~l~~~~~~--~~~l~~~~wSPDG~~iafv~~~-----nl~~~~~~~~~~~~lt~~g~~~~i 158 (465)
T d1xfda1 88 SYTGYYVLSKIPHGDP--QSLDPPEVS--NAKLQYAGWGPKGQQLIFIFEN-----NIYYCAHVGKQAIRVVSTGKEGVI 158 (465)
T ss_dssp CCCSEEEEEESSSCCC--EECCCTTCC--SCCCSBCCBCSSTTCEEEEETT-----EEEEESSSSSCCEEEECCCBTTTE
T ss_pred eccccEEEEEccCCce--eeccCccCC--ccccceeeeccCCceEEEEecc-----eEEEEecCCCceEEEecccCccee
Confidence 4567889988887754 444332221 2456779999999999999876 588888 6777788875321
Q ss_pred --cccccccCCCcc---cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCc
Q 005093 88 --TVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 162 (715)
Q Consensus 88 --~~~~~~~~~~~~---~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 162 (715)
+..+++|.++.. ..+.|||||++|||...+.... +.+...... +...+ ....+.| |..|+.. ...
T Consensus 159 ~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V-~~~~~~~~~-~~~~p----~~~~~~Y-p~~G~~n---p~~ 228 (465)
T d1xfda1 159 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV-PIMELPTYT-GSIYP----TVKPYHY-PKAGSEN---PSI 228 (465)
T ss_dssp EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS-CEEEECCCS-SSSSC----CCEEEEC-CBTTSCC---CEE
T ss_pred eccccchhhhhhhccccceEEECCCCCeEEEEEeccccc-ceeeccccc-ccccc----eeeeeec-cccCCCC---Cce
Confidence 223344444322 3678999999999987554321 222211111 00000 0011122 2223321 235
Q ss_pred eEEEEEccCCceEeecCCCC-----CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 163 SLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 163 ~l~~~~~~~g~~~~l~~~~~-----~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
+|+++|++++.......... +.....+.|+||++. +++..++.. ....|+.+|+
T Consensus 229 ~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~----~~~~~nR~q-----------~~~~i~~~d~------ 287 (465)
T d1xfda1 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV----AVTWLNRAQ-----------NVSILTLCDA------ 287 (465)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE----EEEEEETTS-----------CEEEEEEEET------
T ss_pred eEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeE----EEEEEcccc-----------ccceEEEEcC------
Confidence 79999999887654421111 123456789999875 555554332 1236888886
Q ss_pred hhhhhhhccCCCCCCceecCCC--Cc----cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeec-------CCCC
Q 005093 238 ASELELKESSSEDLPVVNLTES--IS----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW-------PTNG 304 (715)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~lt~~--~~----~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~-------~~~~ 304 (715)
.+++.+.+..+ .+ ....|.|+|||+.++|...... .+..+||.+.+ .++.
T Consensus 288 -----------~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~------~g~~~ly~~~~~~~~~~~~~~~ 350 (465)
T d1xfda1 288 -----------TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ------GGRGKFYHITVSSSQPNSSNDN 350 (465)
T ss_dssp -----------TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC------SSSSCEEEEEEECSSCCSSSCC
T ss_pred -----------CCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeee------cccCceEEEEeccccccCCCce
Confidence 77777766432 11 2467999999999988754321 23445666543 3344
Q ss_pred CCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeC--CeeEEEEEECCCCcEEE-ecCC---CCC
Q 005093 305 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVIISVNVSSGELLR-ITPA---ESN 378 (715)
Q Consensus 305 ~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~--~~~~l~~~d~~tg~~~~-l~~~---~~~ 378 (715)
.++||.+.+++..+. .|..+++.|||++... ...+||+++++++...+ ++.. ...
T Consensus 351 ~~~LT~G~w~V~~i~-------------------~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~ 411 (465)
T d1xfda1 351 IQSITSGDWDVTKIL-------------------AYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCT 411 (465)
T ss_dssp CCBSCCSSSCEEEEE-------------------EEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCC
T ss_pred eEEeccCCceEEEEE-------------------EEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCC
Confidence 577888776654432 4778888999988743 46789999998765544 3321 112
Q ss_pred ceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 379 FSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 379 ~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+....||++++.++..+++++.|+ +.+++..++
T Consensus 412 ~~~~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~ 444 (465)
T d1xfda1 412 YFSASFSHSMDFFLLKCEGPGVPM-VTVHNTTDK 444 (465)
T ss_dssp CCEEEECTTSSEEEEECCSSSSCC-EEEEETTTC
T ss_pred EEEEEECCCCCEEEEEeecCCCCe-EEEEECCCC
Confidence 345689999999999999998887 555554433
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.87 E-value=1e-21 Score=196.78 Aligned_cols=222 Identities=11% Similarity=0.114 Sum_probs=146.4
Q ss_pred ccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 457 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 457 ~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
++..+|..+++|.+.|++. ..++.|+||++||.+.. ...|..++++|+++||.|+++|+||.. |.+... ....
T Consensus 9 ~~~~dg~~l~~w~~~p~~~-~~~~~~~Vvi~HG~~~~--~~~~~~~a~~L~~~G~~Vi~~D~rGh~--G~S~g~--~~~~ 81 (302)
T d1thta_ 9 LRVNNGQELHVWETPPKEN-VPFKNNTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHV--GLSSGS--IDEF 81 (302)
T ss_dssp EEETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGG--GGGGHHHHHHHHTTTCCEEEECCCBCC------------CC
T ss_pred EEcCCCCEEEEEEecCcCC-CCCCCCEEEEeCCCcch--HHHHHHHHHHHHHCCCEEEEecCCCCC--CCCCCc--ccCC
Confidence 3456899999999999863 34678999999996544 457788999999999999999999932 333211 1112
Q ss_pred C-ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC---CCCCceee
Q 005093 537 G-SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DIPDWCYV 612 (715)
Q Consensus 537 ~-~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~ 612 (715)
. ....+|+.++++++.+++ .++++|+||||||.+++.+|.. ..++++|+.+|+.++....... ...... .
T Consensus 82 ~~~~~~~dl~~vi~~l~~~~---~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~~~~~~~~~~~~~~~~~~-~ 155 (302)
T d1thta_ 82 TMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVNLRDTLEKALGFDYLSLP-I 155 (302)
T ss_dssp CHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSCHHHHHHHHHSSCGGGSC-G
T ss_pred CHHHHHHHHHHHHHhhhccC---CceeEEEEEchHHHHHHHHhcc--cccceeEeecccccHHHHHHHHHhhccchhh-h
Confidence 1 224778999999998763 5789999999999999887764 4588999999987654321100 000000 0
Q ss_pred eccCCCCCCCCCCCCC-h-hhHHHHHh------cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEE
Q 005093 613 ESYGSKGKDSFTESPS-V-EDLTRFHS------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 684 (715)
Q Consensus 613 ~~~~~~~~~~~~~~~~-~-~~~~~~~~------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (715)
..... ......... . ........ .++...+.++++|+|++||++|.+||++.+.++++.++ ..+++++
T Consensus 156 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~~~~~~~l~~~i~--s~~~kl~ 231 (302)
T d1thta_ 156 DELPN--DLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIR--TGHCKLY 231 (302)
T ss_dssp GGCCS--EEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCT--TCCEEEE
T ss_pred hhccc--cccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhCC--CCCceEE
Confidence 00000 000000000 0 00000000 12345678899999999999999999999988888774 3468999
Q ss_pred EeCCCCccCCC
Q 005093 685 VFPNDVHGIER 695 (715)
Q Consensus 685 ~~~~~~H~~~~ 695 (715)
+++|++|.+..
T Consensus 232 ~~~g~~H~l~e 242 (302)
T d1thta_ 232 SLLGSSHDLGE 242 (302)
T ss_dssp EETTCCSCTTS
T ss_pred EecCCCccccc
Confidence 99999998753
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.85 E-value=9.3e-21 Score=182.28 Aligned_cols=207 Identities=17% Similarity=0.147 Sum_probs=147.1
Q ss_pred ccccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhh-----
Q 005093 455 ANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL----- 529 (715)
Q Consensus 455 ~~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~----- 529 (715)
+.+++.||..+++++..|. ++++|+||++|++.+. .......++.|+++||.|+++|+.+.+..+....
T Consensus 6 v~~~~~dg~~~~a~~~~P~----~~~~P~vl~~h~~~G~--~~~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~~~~~~~~ 79 (233)
T d1dina_ 6 ISIQSYDGHTFGALVGSPA----KAPAPVIVIAQEIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDER 79 (233)
T ss_dssp CCEECTTSCEECEEEECCS----SSSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTSHH
T ss_pred EEEEcCCCCEEEEEEECCC----CCCceEEEEeCCCCCC--CHHHHHHHHHHHhcCCcceeeeeccCCCcCcccChHHHH
Confidence 3566778999999999996 3689999999975433 2345567889999999999999876444322110
Q ss_pred ------hcCCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC
Q 005093 530 ------QSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 603 (715)
Q Consensus 530 ------~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~ 603 (715)
.............|+.++++++.+.+ .+..+|+++|+|+||.+++.++.. + .+.++++..+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~-~~~~~i~~~G~s~Gg~~a~~~a~~-~-~~~~~~~~~~~~~------- 149 (233)
T d1dina_ 80 QREQAYKLWQAFDMEAGVGDLEAAIRYARHQP-YSNGKVGLVGYCLGGALAFLVAAK-G-YVDRAVGYYGVGL------- 149 (233)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHTST-TEEEEEEEEEETHHHHHHHHHHHH-T-CSSEEEEESCSCG-------
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCC-CCCCceEEEEecccccceeecccc-c-ccceecccccccc-------
Confidence 00000111223568888999998876 455899999999999999988875 3 3555554433110
Q ss_pred CCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEE
Q 005093 604 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 683 (715)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 683 (715)
.++...+.++++|+|++||++|+.+|.+....+.+.++ .+.++++
T Consensus 150 ----------------------------------~~~~~~~~~i~~Pvl~~~G~~D~~vp~e~~~~~~~~~~-~~~~~~~ 194 (233)
T d1dina_ 150 ----------------------------------EKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFG-ANPLLQV 194 (233)
T ss_dssp ----------------------------------GGGGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHT-TCTTEEE
T ss_pred ----------------------------------ccchhhhhccCCcceeeecccccCCCHHHHHHHHHHHh-cCCCEEE
Confidence 01223445788999999999999999998877776664 6789999
Q ss_pred EEeCCCCccCCCCCc-------hHHHHHHHHHHHHH
Q 005093 684 IVFPNDVHGIERPQS-------DFESFLNIGLWFKK 712 (715)
Q Consensus 684 ~~~~~~~H~~~~~~~-------~~~~~~~i~~wl~~ 712 (715)
++|||++|+|..+.. .++.++++++||..
T Consensus 195 ~~y~ga~HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 195 HWYEEAGHSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp EEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred EEECCCCcCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 999999999864321 23567889999964
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.85 E-value=6.2e-21 Score=193.21 Aligned_cols=245 Identities=19% Similarity=0.160 Sum_probs=149.9
Q ss_pred cccCCCCc-eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHH-hCCcEEEEEcCCCCCCCchhhhhcC
Q 005093 456 NLTKGAQK-PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSL 532 (715)
Q Consensus 456 ~~~~~~g~-~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-~~~~~~~~la-~~G~~vi~~d~rG~~~~g~~~~~~~ 532 (715)
++...+|. .+.+++|.|++ ..++.|+||++|||++..+.. .....+..++ +.||.|+.+|||..+++
T Consensus 54 ~~~~~~g~~~i~~~~~~P~~--~~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~pe~-------- 123 (317)
T d1lzla_ 54 SAPGLDGDPEVKIRFVTPDN--TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPET-------- 123 (317)
T ss_dssp EECCSTTCCCEEEEEEEESS--CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTS--------
T ss_pred EEecCCCCceEEEEEECCCC--CCCCCcEEEEecCcccccccccccchHHHhHHhhcCCccccccccccccc--------
Confidence 34444554 69999999985 456889999999998765443 4445555665 56999999999986553
Q ss_pred CCCCCccchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhCCC----ceeEEEecCCcchhh----hhc
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLA----LMV 601 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~~~~----~~~ 601 (715)
.....++|+.+++.|+.++ ..+|+++|+|+|+|+||++++.++.+.++ .....++..+..... ...
T Consensus 124 ---~~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 200 (317)
T d1lzla_ 124 ---TFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMT 200 (317)
T ss_dssp ---CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCCTTCCSHHHH
T ss_pred ---cccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhcccccccccccccccccccccccccc
Confidence 2233478899999888764 34889999999999999999988765321 123333333322110 000
Q ss_pred cCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhc-cCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCc
Q 005093 602 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHI-SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 680 (715)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~ 680 (715)
...+...+.............................+|.... ....+|+|+++|+.|.. .+++..++++|+++|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~l--~~~~~~~~~~L~~~G~~ 278 (317)
T d1lzla_ 201 NFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDPL--RDEGIEYALRLLQAGVS 278 (317)
T ss_dssp HCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCTT--HHHHHHHHHHHHHTTCC
T ss_pred cccccchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCCC--HHHHHHHHHHHHHCCCC
Confidence 0000000000000000000000000000000000111222111 12237999999999954 47899999999999999
Q ss_pred EEEEEeCCCCccCCCC---CchHHHHHHHHHHHHHhcC
Q 005093 681 TKVIVFPNDVHGIERP---QSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 681 ~~~~~~~~~~H~~~~~---~~~~~~~~~i~~wl~~~l~ 715 (715)
+++++|++++|+|... ....+..+++++||+++||
T Consensus 279 v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 279 VELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp EEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 9999999999987532 2234567789999999986
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.84 E-value=4.5e-21 Score=196.87 Aligned_cols=239 Identities=18% Similarity=0.151 Sum_probs=157.9
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc---cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 532 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~---~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~ 532 (715)
++...+|.+|.+.+|.|++ ..++.|+||++|||++..... .+...++.++++|+.|+.+|||.+++..
T Consensus 83 ~i~~~dg~~i~~~iy~P~~--~~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~~~~------- 153 (358)
T d1jkma_ 83 TILGVDGNEITLHVFRPAG--VEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAE------- 153 (358)
T ss_dssp EEECTTSCEEEEEEEEETT--CCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETT-------
T ss_pred EEeCCCCCEEEEEEEecCC--CCCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeeccccccc-------
Confidence 4556789999999999985 456789999999998865432 3445778899999999999999863321
Q ss_pred CCCCCccchhhHHHHHHHHHHcC-CCCCceEEEEEeChhHHHHHHHHhhC-----CCceeEEEecCCcchhhhhccCCCC
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDI 606 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~~~~~~~~~~~~~~~ 606 (715)
+.......++|+.++++|+.++. ..|.++|+|+|+|+||++++.++... ...+.+.++.+|+.+......
T Consensus 154 pe~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---- 229 (358)
T d1jkma_ 154 GHHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWD---- 229 (358)
T ss_dssp EECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTSC----
T ss_pred ccCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccceeccccCcc----
Confidence 11223446899999999998752 35789999999999999998776431 345788888888765321100
Q ss_pred CCceeeeccCC--CCCCCCCCCCChhhHHHHH---------hcCchhh-------ccCCCCcEEEEeeCCCCcCCchHHH
Q 005093 607 PDWCYVESYGS--KGKDSFTESPSVEDLTRFH---------SKSPISH-------ISKVKTPTIFLLGAQDLRVPVSNGL 668 (715)
Q Consensus 607 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~sp~~~-------~~~i~~P~Lii~G~~D~~v~~~~~~ 668 (715)
.+........ .....+ ........+. ..+|... ..+--+|+||++|+.|.++ +++.
T Consensus 230 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l~--~e~~ 303 (358)
T d1jkma_ 230 -HERRLTELPSLVENDGYF---IENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLR--DEGI 303 (358)
T ss_dssp -HHHHHHHCTHHHHTTTSS---SCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTTH--HHHH
T ss_pred -chhhcccccchhcccccc---cchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCCCCCH--HHHH
Confidence 0000000000 000000 0000000000 0111110 0112369999999999765 7889
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCccCCC------CCchHHHHHHHHHHHHHh
Q 005093 669 QYARALREKGVETKVIVFPNDVHGIER------PQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 669 ~~~~~l~~~g~~~~~~~~~~~~H~~~~------~~~~~~~~~~i~~wl~~~ 713 (715)
.++++|+++|++++++++++++|+|.. ++...+..+.|..|+.++
T Consensus 304 ~~~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 304 AFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp HHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998631 233445677888888764
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=1.3e-20 Score=182.30 Aligned_cols=204 Identities=15% Similarity=0.048 Sum_probs=135.6
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc---cchhhHHH----HHHHH
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS---QDVNDVLT----AIDHV 551 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~---~~~~d~~~----~i~~l 551 (715)
++.|+||++||.+.. ...+...++.|+++||.|++||+||.+. +........... ....++.. +...+
T Consensus 22 ~~~~~vl~lHG~~~~--~~~~~~~~~~la~~G~~V~~~D~~g~g~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (238)
T d1ufoa_ 22 APKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGE---REGPPPSSKSPRYVEEVYRVALGFKEEARRVA 96 (238)
T ss_dssp SCCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTSTT---SSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEEecCCCCCC---CcccccccccchhhhhhhhhHHhHHHHHHHHh
Confidence 457999999996654 4466667788999999999999999443 321111111111 11112222 22223
Q ss_pred HHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhh
Q 005093 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 631 (715)
Q Consensus 552 ~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (715)
.....++..+++++|+|+||.+++.++..+|+.. +++...+........ . ........
T Consensus 97 ~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~~-~~~~~~~~~~~~~~~------------~---------~~~~~~~~ 154 (238)
T d1ufoa_ 97 EEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPR-GVLAFIGSGFPMKLP------------Q---------GQVVEDPG 154 (238)
T ss_dssp HHHHHHHCCCEEEEEETHHHHHHHHHHHTTCCCS-CEEEESCCSSCCCCC------------T---------TCCCCCHH
T ss_pred hhccccCCceEEEEEecccHHHHHHHHhcCcchh-heeeeeeeccccccc------------c---------cccccccc
Confidence 3334467889999999999999999999888644 444433322211000 0 00111233
Q ss_pred HHHHHhcCchhhccC-CCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCC--cEEEEEeCCCCccCCCCCchHHHHHHHHH
Q 005093 632 LTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGV--ETKVIVFPNDVHGIERPQSDFESFLNIGL 708 (715)
Q Consensus 632 ~~~~~~~sp~~~~~~-i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~--~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 708 (715)
.......++.....+ .++|+|++||++|..||++++.++++++++.+. .++++.++|+||.+. .+.++.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~g~gH~~~-----~~~~~~~~~ 229 (238)
T d1ufoa_ 155 VLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLT-----PLMARVGLA 229 (238)
T ss_dssp HHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSSCC-----HHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhcCCCeEEEEcCCCCccCHHHHHHHHHHHHhcCCCceEEEEEECCCCCccC-----HHHHHHHHH
Confidence 344556666655444 468999999999999999999999999998876 468889999999875 356788899
Q ss_pred HHHHhc
Q 005093 709 WFKKYC 714 (715)
Q Consensus 709 wl~~~l 714 (715)
||.+||
T Consensus 230 f~~~~l 235 (238)
T d1ufoa_ 230 FLEHWL 235 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999987
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.83 E-value=2e-20 Score=182.01 Aligned_cols=184 Identities=16% Similarity=0.178 Sum_probs=141.7
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhH
Q 005093 466 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 544 (715)
Q Consensus 466 ~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~-~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~ 544 (715)
..-+|.|++ ++.|+|||+|||+|.... ..+...+..|+++||.|+.+|||.+++. .....++|+
T Consensus 51 ~lDiy~P~~----~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~-----------~~p~~~~d~ 115 (261)
T d2pbla1 51 KFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEV-----------RISEITQQI 115 (261)
T ss_dssp EEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTS-----------CHHHHHHHH
T ss_pred EEEEeccCC----CCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeecccccccccc-----------cCchhHHHH
Confidence 334888863 468999999999876543 3566678889999999999999986543 122358999
Q ss_pred HHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCC------CceeEEEecCCcchhhhhccCCCCCCceeeeccCCC
Q 005093 545 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 618 (715)
Q Consensus 545 ~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (715)
.++++|+.++. +++|+|+|||+||+++++++.... ..++++++++|+.++........ ...+
T Consensus 116 ~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--- 183 (261)
T d2pbla1 116 SQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTSM------NEKF--- 183 (261)
T ss_dssp HHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGSTT------HHHH---
T ss_pred HHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhhhh------cccc---
Confidence 99999999984 479999999999999988775432 35889999999887653321100 0000
Q ss_pred CCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 005093 619 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 691 (715)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 691 (715)
....+.....||+..+.+..+|+||+||++|..++..++.+++++++ ++.+.+++.+|
T Consensus 184 ----------~~~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~~~qs~~~~~~l~-----~~~~~~~~~~H 241 (261)
T d2pbla1 184 ----------KMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHH 241 (261)
T ss_dssp ----------CCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCT
T ss_pred ----------cCCHHHHHHhCchhhcccCCCeEEEEEecCCCchHHHHHHHHHHHhC-----CCceEeCCCCc
Confidence 12245667789999999999999999999999999999999999884 56788999999
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.82 E-value=1.9e-19 Score=169.27 Aligned_cols=194 Identities=11% Similarity=0.104 Sum_probs=141.1
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCC-C----ccchh
Q 005093 468 IFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV-G----SQDVN 542 (715)
Q Consensus 468 ~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~-~----~~~~~ 542 (715)
.++.|. ..+++|+||++||++.+ ...+...+..++ .++.|++|+.......+..+........ . ....+
T Consensus 4 ~i~~~~---~~~~~P~vi~lHG~g~~--~~~~~~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (202)
T d2h1ia1 4 HVFQKG---KDTSKPVLLLLHGTGGN--ELDLLPLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTK 77 (202)
T ss_dssp EEEECC---SCTTSCEEEEECCTTCC--TTTTHHHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHH
T ss_pred ccCCCC---CCCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHHHHHHH
Confidence 367775 45678999999996544 345666677665 5888999875432222111111111000 0 11234
Q ss_pred hHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCC
Q 005093 543 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 622 (715)
Q Consensus 543 d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (715)
++.+.++.+.++..+|.++|+++|+|+||.+++.++.++|+++.++++.+|.....
T Consensus 78 ~~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~------------------------ 133 (202)
T d2h1ia1 78 ELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR------------------------ 133 (202)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS------------------------
T ss_pred HHHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc------------------------
Confidence 56677777777777999999999999999999999999999999999988854210
Q ss_pred CCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHH
Q 005093 623 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFES 702 (715)
Q Consensus 623 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 702 (715)
+........+|++++||++|++||++.+.+++++|+++|.+++++.||+ ||.+. .+.
T Consensus 134 -----------------~~~~~~~~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~ 190 (202)
T d2h1ia1 134 -----------------GMQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTMHWENR-GHQLT-----MGE 190 (202)
T ss_dssp -----------------SCCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHH
T ss_pred -----------------cccccccccchhhcccccCCCccCHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHH
Confidence 0011123457899999999999999999999999999999999999986 89874 466
Q ss_pred HHHHHHHHHHhc
Q 005093 703 FLNIGLWFKKYC 714 (715)
Q Consensus 703 ~~~i~~wl~~~l 714 (715)
++.+.+||++.+
T Consensus 191 ~~~~~~wl~k~f 202 (202)
T d2h1ia1 191 VEKAKEWYDKAF 202 (202)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 889999998753
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.82 E-value=7.4e-21 Score=191.54 Aligned_cols=216 Identities=19% Similarity=0.189 Sum_probs=149.6
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHH-HhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccch
Q 005093 464 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 541 (715)
Q Consensus 464 ~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-~~~~~~~~l-a~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~ 541 (715)
++...+|.|+ ++.|+||++|||++..+.. .+...+..+ ++.|+.|+.+|||.++++ .....+
T Consensus 67 ~i~~~iy~P~-----~~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrlap~~-----------~~p~~~ 130 (311)
T d1jjia_ 67 DIRVRVYQQK-----PDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEH-----------KFPAAV 130 (311)
T ss_dssp EEEEEEEESS-----SSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTS-----------CTTHHH
T ss_pred cEEEEEEcCC-----CCceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEecccccccc-----------ccchhh
Confidence 6888999986 2459999999998876543 444555555 556999999999997654 223357
Q ss_pred hhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhC----CCceeEEEecCCcchhhhhccCCCCCCceeeec
Q 005093 542 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 614 (715)
Q Consensus 542 ~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~----p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (715)
+|+.++++|+.++ ..+|++||+|+|+|+||++++.++... .....+.++++|+.+....... ...
T Consensus 131 ~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~--------~~~ 202 (311)
T d1jjia_ 131 YDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTPS--------LLE 202 (311)
T ss_dssp HHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSCCHH--------HHH
T ss_pred hhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecceeeeccCccc--------ccc
Confidence 8999999999885 358899999999999999988776432 3467888899998764321100 000
Q ss_pred cCCCCCCCCCCCCChhhH-------------HHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcE
Q 005093 615 YGSKGKDSFTESPSVEDL-------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 681 (715)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~-------------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 681 (715)
+.. .... ...... ......+|+....+..+|+||++|+.|..+ .++..++++|+++|+++
T Consensus 203 ~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l~--d~~~~~~~~L~~~Gv~v 275 (311)
T d1jjia_ 203 FGE----GLWI-LDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPLR--DEGEVFGQMLRRAGVEA 275 (311)
T ss_dssp TSS----SCSS-CCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTTH--HHHHHHHHHHHHTTCCE
T ss_pred ccc----cccc-ccHHHhhhhhhhcccccccccccccchhhcccccCCCEEEEEcCCCCCh--HHHHHHHHHHHHCCCCE
Confidence 000 0000 000000 001123565554455589999999999765 68899999999999999
Q ss_pred EEEEeCCCCccCCCC----CchHHHHHHHHHHH
Q 005093 682 KVIVFPNDVHGIERP----QSDFESFLNIGLWF 710 (715)
Q Consensus 682 ~~~~~~~~~H~~~~~----~~~~~~~~~i~~wl 710 (715)
++++|++++|+|... ....+++++|.+||
T Consensus 276 ~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl 308 (311)
T d1jjia_ 276 SIVRYRGVLHGFINYYPVLKAARDAINQIAALL 308 (311)
T ss_dssp EEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCccccCCCcCHHHHHHHHHHHHHh
Confidence 999999999987532 22346777788886
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=4e-20 Score=174.06 Aligned_cols=191 Identities=16% Similarity=0.223 Sum_probs=133.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH--HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~--~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
+|..++.....|. .....|.||++||.+.+ ...|.. .+..|+++||.|+++|+|| +|.+...........
T Consensus 14 ~G~~i~y~~~~~~---~~~~~~~vvllHG~~~~--~~~w~~~~~~~~la~~gy~via~D~~G---~G~S~~~~~~~~~~~ 85 (208)
T d1imja_ 14 QGQALFFREALPG---SGQARFSVLLLHGIRFS--SETWQNLGTLHRLAQAGYRAVAIDLPG---LGHSKEAAAPAPIGE 85 (208)
T ss_dssp TTEEECEEEEECS---SSCCSCEEEECCCTTCC--HHHHHHHTHHHHHHHTTCEEEEECCTT---SGGGTTSCCSSCTTS
T ss_pred CCEEEEEEEecCC---CCCCCCeEEEECCCCCC--hhHHhhhHHHHHHHHcCCeEEEeeccc---ccCCCCCCcccccch
Confidence 6788877777775 45667889999997654 344544 4678999999999999999 776643222222222
Q ss_pred cc-hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCC
Q 005093 539 QD-VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 617 (715)
Q Consensus 539 ~~-~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (715)
.. .+++.+.++.+ +.+++.|+||||||.+++.++.++|++++++|+++|...- .+
T Consensus 86 ~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~----------------~~-- 141 (208)
T d1imja_ 86 LAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTD----------------KI-- 141 (208)
T ss_dssp CCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGG----------------GS--
T ss_pred hhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccccc----------------cc--
Confidence 21 23333333332 4578899999999999999999999999999998875310 00
Q ss_pred CCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCC
Q 005093 618 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 697 (715)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 697 (715)
....+.++++|+|+++|++|.++|.+. + .+ +.-...++.+++++||.... +
T Consensus 142 ----------------------~~~~~~~i~~P~Lii~G~~D~~~~~~~--~---~~-~~~~~~~~~~i~~~gH~~~~-~ 192 (208)
T d1imja_ 142 ----------------------NAANYASVKTPALIVYGDQDPMGQTSF--E---HL-KQLPNHRVLIMKGAGHPCYL-D 192 (208)
T ss_dssp ----------------------CHHHHHTCCSCEEEEEETTCHHHHHHH--H---HH-TTSSSEEEEEETTCCTTHHH-H
T ss_pred ----------------------ccccccccccccccccCCcCcCCcHHH--H---HH-HhCCCCeEEEECCCCCchhh-h
Confidence 012245688999999999999876431 2 22 23346889999999997542 3
Q ss_pred chHHHHHHHHHHHHH
Q 005093 698 SDFESFLNIGLWFKK 712 (715)
Q Consensus 698 ~~~~~~~~i~~wl~~ 712 (715)
..+++.+.+++||+.
T Consensus 193 ~p~~~~~~l~~Fl~~ 207 (208)
T d1imja_ 193 KPEEWHTGLLDFLQG 207 (208)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhc
Confidence 445788999999974
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.81 E-value=2.1e-19 Score=187.25 Aligned_cols=248 Identities=11% Similarity=0.056 Sum_probs=170.2
Q ss_pred cCCCCc--eEEEEEEecCCCCCCCCCcEEEEEcCCCCC------------------------------------------
Q 005093 458 TKGAQK--PFEAIFVSSSHKKDCSCDPLIVVLHGGPHS------------------------------------------ 493 (715)
Q Consensus 458 ~~~~g~--~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~------------------------------------------ 493 (715)
+++||. .|++.||+|+ ..++.|+|+..+.-...
T Consensus 34 t~rDG~~d~l~~di~rP~---~~~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (405)
T d1lnsa3 34 SEQRGENDLIKIQIIRPK---STEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKEL 110 (405)
T ss_dssp TTCSSSCCEEEEEEEECC---CSSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCEeEEEEEEEccC---CCCCceEEEEeCCcCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 456788 5999999998 45689999877652110
Q ss_pred ---------CCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC--------
Q 005093 494 ---------VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL-------- 556 (715)
Q Consensus 494 ---------~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~-------- 556 (715)
..........++|+.+||+|+.+|.||.++++..+ ..++..+.+|..++|+|+..+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~-----~~~~~~e~~D~~~~IeWl~~~~~~~~~~~~~ 185 (405)
T d1lnsa3 111 PIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQ-----TSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 185 (405)
T ss_dssp CEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCC-----CTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccccccccccccccchHHHHhCCCEEEEECCCCCCCCCCcc-----ccCChhhhhhHHHHHHHHHhccccccccccc
Confidence 00001123567899999999999999987776544 23444568899999999986432
Q ss_pred ------CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCC-----Cceee-eccCCCCCCCC-
Q 005093 557 ------ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP-----DWCYV-ESYGSKGKDSF- 623 (715)
Q Consensus 557 ------~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~- 623 (715)
....||+++|+|+||++++.+|+..|+.++|+|..+++.++.......... .+... ...........
T Consensus 186 ~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (405)
T d1lnsa3 186 HEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNL 265 (405)
T ss_dssp CEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGG
T ss_pred ccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhhhhhhhhhcccccccc
Confidence 234589999999999999999999999999999999998875432111000 00000 00000000000
Q ss_pred ----------------------CCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcE
Q 005093 624 ----------------------TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 681 (715)
Q Consensus 624 ----------------------~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 681 (715)
.........+.+...++...+.+|++|+|+++|..|..+++.++.+++++++ .+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~~~~~~~~y~al~-~~~~~ 344 (405)
T d1lnsa3 266 DGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALP-EGHAK 344 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSC-TTCCE
T ss_pred ccchhhhchhhhhhccchhhhhhhhccccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCCHHHHHHHHHHHH-hCCCc
Confidence 0000001124466778888999999999999999999999999999999986 46678
Q ss_pred EEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 682 KVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 682 ~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
++++.|+ +|.........++.+.+++||++|||
T Consensus 345 ~Lilgpw-~H~~~~~~~~~d~~~~~~~wFD~~Lk 377 (405)
T d1lnsa3 345 HAFLHRG-AHIYMNSWQSIDFSETINAYFVAKLL 377 (405)
T ss_dssp EEEEESC-SSCCCTTBSSCCHHHHHHHHHHHHHT
T ss_pred EEEEeCC-CCCCCcccccchHHHHHHHHHHHHhC
Confidence 8888875 78654333334577889999999996
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1.4e-19 Score=177.85 Aligned_cols=198 Identities=12% Similarity=0.125 Sum_probs=129.4
Q ss_pred CCCCCcEEEEEcCCCCCCCC---ccchHH----HHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHH
Q 005093 477 DCSCDPLIVVLHGGPHSVSL---SSYSKS----LAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 549 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~---~~~~~~----~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~ 549 (715)
..+++|+||++|||++.... ..+... +..++++||.|+++|||++++. .....++|+.++++
T Consensus 27 ~~~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~-----------~~~~~~~d~~~~~~ 95 (263)
T d1vkha_ 27 SQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNIT 95 (263)
T ss_dssp CTTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcch-----------hhhHHHHhhhhhhh
Confidence 45678999999998865322 233333 3445689999999999986653 12235899999999
Q ss_pred HHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCC-----------------ceeEEEecCCcchhhhhccCCCCCCceee
Q 005093 550 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----------------KFVAAAARNPLCNLALMVGTTDIPDWCYV 612 (715)
Q Consensus 550 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 612 (715)
|+.++. +..+|+|+|||+||.+++.++...++ .+.+.+...+..++...........+...
T Consensus 96 ~l~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T d1vkha_ 96 RLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 173 (263)
T ss_dssp HHHHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred cccccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhh
Confidence 999984 67899999999999999998876543 23445555555443322111000000000
Q ss_pred eccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc
Q 005093 613 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 692 (715)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 692 (715)
..+.. ....+.. .... ........+.++.+|+|++||++|++||++++..++++|++.|++++++++++++|.
T Consensus 174 ~~~~~-~~~~~~~----~~~~--~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~s~~l~~~L~~~g~~~~~~~~~~~~H~ 246 (263)
T d1vkha_ 174 LAFPD-GIQMYEE----EPSR--VMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 246 (263)
T ss_dssp HHCTT-CGGGCCC----CHHH--HHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGG
T ss_pred ccccc-ccccccc----cccc--cCccccccccccCCCeeeeecCCCcccCHHHHHHHHHHHHHCCCCEEEEEECCCCch
Confidence 00000 0000000 0000 000011234567799999999999999999999999999999999999999999997
Q ss_pred CC
Q 005093 693 IE 694 (715)
Q Consensus 693 ~~ 694 (715)
..
T Consensus 247 ~~ 248 (263)
T d1vkha_ 247 DV 248 (263)
T ss_dssp GG
T ss_pred hh
Confidence 54
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.80 E-value=1.6e-20 Score=189.46 Aligned_cols=229 Identities=17% Similarity=0.138 Sum_probs=152.0
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHhCC-cEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVG-YSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~-~~~~~~~~~la~~G-~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
..+|.++.+.+|+|++. .++.|+||++|||++.... ..+...+..++.+| +.|+.+|||..+++ .
T Consensus 52 ~~~g~~i~~~~y~P~~~--~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p~~-----------~ 118 (308)
T d1u4na_ 52 DLPGRTLKVRMYRPEGV--EPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEH-----------K 118 (308)
T ss_dssp EETTEEEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS-----------C
T ss_pred ecCCceEEEEEEecccc--CCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccccc-----------c
Confidence 34788899999999863 4579999999999876543 34455666666555 56888999986542 3
Q ss_pred CccchhhHHHHHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhCCC----ceeEEEecCCcchhhhhccCCCCCCc
Q 005093 537 GSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDW 609 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~~~~~~~~~~~~~~~ 609 (715)
.....+|+.++++|+.++. .+|+++|+++|+|+||++++.++....+ .+.+..+.++..+....... .
T Consensus 119 ~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 193 (308)
T d1u4na_ 119 FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAHPP-----A 193 (308)
T ss_dssp TTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCCCCCTTSCC-----H
T ss_pred cccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCccccccccccccccccccc-----c
Confidence 3345889999999998753 5889999999999999999988765432 34555566655432211000 0
Q ss_pred eeeeccCCCCCCCCCCCCChhhHH-------------HHHhcCchhhccCC-CCcEEEEeeCCCCcCCchHHHHHHHHHH
Q 005093 610 CYVESYGSKGKDSFTESPSVEDLT-------------RFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALR 675 (715)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~sp~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~ 675 (715)
....... ... ....... .....++....... .+|+||++|+.|..+ .++..++++|+
T Consensus 194 -~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l~--~~~~~~~~~L~ 264 (308)
T d1u4na_ 194 -SIEENAE-----GYL-LTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLR--DVGKLYAEALN 264 (308)
T ss_dssp -HHHHTSS-----SSS-SCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTTH--HHHHHHHHHHH
T ss_pred -hhhhccc-----ccc-ccchhhhhhhhcccCccccccchhhhhhhchhhcCCCCeeEEecCcCCch--HHHHHHHHHHH
Confidence 0000000 000 0000000 00111222222222 258999999999765 68899999999
Q ss_pred HcCCcEEEEEeCCCCccCCCC----CchHHHHHHHHHHHHHhc
Q 005093 676 EKGVETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 676 ~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~~l 714 (715)
++|++++++++++++|+|... ....+.++++.+||++.|
T Consensus 265 ~~G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 265 KAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HTTCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999987531 223478889999999877
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=8.3e-18 Score=165.56 Aligned_cols=242 Identities=17% Similarity=0.151 Sum_probs=179.0
Q ss_pred ceEEEEecCCCCC--CeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCC
Q 005093 55 SKLLVVRNPENES--PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 131 (715)
Q Consensus 55 ~~la~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 131 (715)
.+|||++..++++ .+||.++ +++..++++...... ..++|||||++|||++...
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~sP~wSPDGk~IAf~~~~~------------- 60 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 60 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCE----------EEEEECTTSSEEEEEECTT-------------
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCCce----------eeeEECCCCCEEEEEEeec-------------
Confidence 7899998876322 2688888 777888888765554 6899999999999987543
Q ss_pred CCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 005093 132 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 211 (715)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~ 211 (715)
....+++++..++..+.+ +........+.|||||+. |++.....+
T Consensus 61 ----------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~----i~~~~~~~~- 105 (269)
T d2hqsa1 61 ----------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSKTG- 105 (269)
T ss_dssp ----------------------------SSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTTSSE----EEEEECTTS-
T ss_pred ----------------------------cCcceeeeecccCceeEE--eeeecccccceecCCCCe----eeEeeecCC-
Confidence 236799999999998888 455556677899999999 999874332
Q ss_pred ceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccc
Q 005093 212 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 291 (715)
Q Consensus 212 ~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~ 291 (715)
...++.... .................+.++++++.+++.+.+. +
T Consensus 106 -----------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g 149 (269)
T d2hqsa1 106 -----------SLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA--------G 149 (269)
T ss_dssp -----------SCEEEEEET-----------------TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT--------S
T ss_pred -----------ccceeeccc-----------------ccccceeeeeccccccccccccccccceeccccc--------C
Confidence 124555553 4445555565666677899999999999998874 2
Q ss_pred cceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 005093 292 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 371 (715)
Q Consensus 292 ~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 371 (715)
..+|++.++.++...+++.... ....+.|+|||+.+++.....+...++.++..++..+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~~--------------------~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~ 209 (269)
T d2hqsa1 150 RPQVYKVNINGGAPQRITWEGS--------------------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 209 (269)
T ss_dssp SCEEEEEETTSSCCEECCCSSS--------------------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred CceEeeeecccccceeeecccc--------------------cccccccccccceeEEEeecCCceeeeEeecccccceE
Confidence 4579999988876654443221 12245799999999999988888999999998887765
Q ss_pred ecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 372 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 372 l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+... .....+.|||||+.|+|+... ....+|++.+++++
T Consensus 210 ~~~~-~~~~~p~~SPDG~~i~f~s~~-~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 210 LSST-FLDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGR 248 (269)
T ss_dssp CCCS-SSCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSC
T ss_pred eecC-ccccceEECCCCCEEEEEEcC-CCCcEEEEEECCCC
Confidence 5543 334557899999999998754 45567999888654
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.80 E-value=1.5e-19 Score=185.52 Aligned_cols=242 Identities=15% Similarity=0.116 Sum_probs=163.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~--~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
.||.+|.+.+|+|+ ..++.|+||+.||.+.... ...+....+.|+++||+|+++|.||.++++..+ ...
T Consensus 13 rDGv~L~~~vy~P~---~~~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~G~~------~~~ 83 (347)
T d1ju3a2 13 RDGVRLAVDLYRPD---ADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEF------VPH 83 (347)
T ss_dssp TTSCEEEEEEEEEC---CSSCEEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCCSCC------CTT
T ss_pred CCCCEEEEEEEEcC---CCCCEEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccCCcc------ccc
Confidence 47899999999997 4678999999998332111 112333467899999999999999987776543 223
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCC--------c
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD--------W 609 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~--------~ 609 (715)
.....|..++++|+.+++..+ .||+++|+|+||++++.+|+..|..+++++..++..++........... |
T Consensus 84 ~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~gg~~~~~~~~~~ 162 (347)
T d1ju3a2 84 VDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVEALLGW 162 (347)
T ss_dssp TTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCCCCHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhcCCccchhhHHHH
Confidence 334678899999999998776 7999999999999999999998999999999998876531100000000 0
Q ss_pred eeee---ccC-------------------------CCCCCCCCCCC---------------ChhhHHHHHhcCchhhccC
Q 005093 610 CYVE---SYG-------------------------SKGKDSFTESP---------------SVEDLTRFHSKSPISHISK 646 (715)
Q Consensus 610 ~~~~---~~~-------------------------~~~~~~~~~~~---------------~~~~~~~~~~~sp~~~~~~ 646 (715)
.... ... ..........+ .....+.+...++...+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 242 (347)
T d1ju3a2 163 SALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESWQSISLFERLGG 242 (347)
T ss_dssp HHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHHHHTTCCHHHHTT
T ss_pred HHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhhhhcCCHHHHhhc
Confidence 0000 000 00000000000 0011234556678888999
Q ss_pred CCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCC------------CCCchHHHHHHHHHHHHHhc
Q 005093 647 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE------------RPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 647 i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~------------~~~~~~~~~~~i~~wl~~~l 714 (715)
+++|+|+++|..|..+ ..+.+.+++++. +.+.++++.|. +|... ......+....+++||++||
T Consensus 243 i~vP~L~i~G~~D~~~--~~~~~~~~~~~~-~~~~~liigpw-~H~~~~~~~~~~~~g~~~~~~~~~~~~~~l~wfD~~L 318 (347)
T d1ju3a2 243 LATPALITAGWYDGFV--GESLRTFVAVKD-NADARLVVGPW-SHSNLTGRNADRKFGIAATYPIQEATTMHKAFFDRHL 318 (347)
T ss_dssp CCCCEEEEEEEECTTH--HHHHHHHHHHTT-TSCEEEEEEEE-ESSCCSSEETTEECCGGGSCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeccccCCCc--chhHHHHHHhhc-cCCceEEEcCc-cccCcccccCCCCCCccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999765 456777777764 56778888775 45321 12334567788999999999
Q ss_pred C
Q 005093 715 K 715 (715)
Q Consensus 715 ~ 715 (715)
|
T Consensus 319 K 319 (347)
T d1ju3a2 319 R 319 (347)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.79 E-value=2.7e-18 Score=171.61 Aligned_cols=232 Identities=14% Similarity=0.131 Sum_probs=142.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch-HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~-~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
+|..|+...+- ++..|.||++||.+.+ ...|. .+++.|+++||.|+++|+|| +|.+.... ......
T Consensus 8 g~~~i~y~~~G------~~~~p~vvl~HG~~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~--~~~~~~ 74 (297)
T d1q0ra_ 8 GDVELWSDDFG------DPADPALLLVMGGNLS--ALGWPDEFARRLADGGLHVIRYDHRD---TGRSTTRD--FAAHPY 74 (297)
T ss_dssp TTEEEEEEEES------CTTSCEEEEECCTTCC--GGGSCHHHHHHHHTTTCEEEEECCTT---STTSCCCC--TTTSCC
T ss_pred CCEEEEEEEec------CCCCCEEEEECCCCcC--hhHHHHHHHHHHHhCCCEEEEEeCCC---Cccccccc--cccccc
Confidence 45667655542 3356889999997654 44554 46778899999999999999 55543111 111123
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh--------ccCC---CCCC
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--------VGTT---DIPD 608 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~--------~~~~---~~~~ 608 (715)
.++|+.+.+..+++. ++.+++.++|||+||.+++.+|.++|++++++|++++....... .... ....
T Consensus 75 ~~~~~~~d~~~ll~~--l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (297)
T d1q0ra_ 75 GFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLDGLPG 152 (297)
T ss_dssp CHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSSCSCC
T ss_pred ccchhhhhhcccccc--ccccceeeccccccchhhhhhhcccccceeeeEEEccccccccchhhhHHHhhhhhhhhhhhh
Confidence 466766666666665 34578999999999999999999999999999998775432100 0000 0000
Q ss_pred --ceeeec---cCCCC----------------CCCCCCCCChhhHHHHH-----------------------hcCchhhc
Q 005093 609 --WCYVES---YGSKG----------------KDSFTESPSVEDLTRFH-----------------------SKSPISHI 644 (715)
Q Consensus 609 --~~~~~~---~~~~~----------------~~~~~~~~~~~~~~~~~-----------------------~~sp~~~~ 644 (715)
...... ..... ...............+. ..+....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (297)
T d1q0ra_ 153 PQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAEL 232 (297)
T ss_dssp CCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGGGGGG
T ss_pred hhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhhhhhhhhhhccccchhhh
Confidence 000000 00000 00000000000000000 01122346
Q ss_pred cCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 645 SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 645 ~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
.++++|+|+++|++|.++|+..++.+.+.+. ..++++++++||.+.. +...++.+.|++|++.
T Consensus 233 ~~i~~Pvlvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~~l~~ 295 (297)
T d1q0ra_ 233 REVTVPTLVIQAEHDPIAPAPHGKHLAGLIP----TARLAEIPGMGHALPS-SVHGPLAEVILAHTRS 295 (297)
T ss_dssp GGCCSCEEEEEETTCSSSCTTHHHHHHHTST----TEEEEEETTCCSSCCG-GGHHHHHHHHHHHHHH
T ss_pred hccCCceEEEEeCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCcchh-hCHHHHHHHHHHHHHh
Confidence 7789999999999999999988877766553 4789999999998653 3445677778888765
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.79 E-value=4.8e-19 Score=175.75 Aligned_cols=233 Identities=18% Similarity=0.171 Sum_probs=137.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
++..++.... ++...|+||++||.+.... ...|...+..|+ +||.|+++|+|| +|.+............
T Consensus 12 ~~~~~h~~~~------G~~~~p~ivllHG~~~~~~~~~~~~~~~~~L~-~~~~vi~~D~~G---~G~S~~~~~~~~~~~~ 81 (281)
T d1c4xa_ 12 GTLASHALVA------GDPQSPAVVLLHGAGPGAHAASNWRPIIPDLA-ENFFVVAPDLIG---FGQSEYPETYPGHIMS 81 (281)
T ss_dssp TTSCEEEEEE------SCTTSCEEEEECCCSTTCCHHHHHGGGHHHHH-TTSEEEEECCTT---STTSCCCSSCCSSHHH
T ss_pred CCEEEEEEEE------ecCCCCEEEEECCCCCCCcHHHHHHHHHHHHh-CCCEEEEEeCCC---Cccccccccccccchh
Confidence 4466765543 2335689999999654432 234666677775 589999999999 6655321111111111
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh--------hhccCCCCCCcee
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA--------LMVGTTDIPDWCY 611 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~ 611 (715)
..++..+.+..+++. ...+++.++||||||.+++.+|.++|++++++|++++..... .+...........
T Consensus 82 ~~~~~~~~i~~~i~~--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (281)
T d1c4xa_ 82 WVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADPRLTP 159 (281)
T ss_dssp HHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGSCCHHH
T ss_pred hHHHhhhhccccccc--cccccceeccccccccccccccccccccccceEEeccccCccccchhHHHHHHHhhhhcccch
Confidence 233444444333333 234689999999999999999999999999999988753210 0000000000000
Q ss_pred -eeccCCCCCCCCCCCCCh-hhHHH------------H-------------HhcCchhhccCCCCcEEEEeeCCCCcCCc
Q 005093 612 -VESYGSKGKDSFTESPSV-EDLTR------------F-------------HSKSPISHISKVKTPTIFLLGAQDLRVPV 664 (715)
Q Consensus 612 -~~~~~~~~~~~~~~~~~~-~~~~~------------~-------------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~ 664 (715)
...+.. ........+.. ..... . ....+...+.++++|+|+++|++|..+|+
T Consensus 160 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~ 238 (281)
T d1c4xa_ 160 YRELIHS-FVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDRIVPL 238 (281)
T ss_dssp HHHHHHT-TSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEETTCSSSCT
T ss_pred hhhhhhh-hcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhhccceEEEEeCCCCCcCH
Confidence 000000 00000000000 00000 0 01122234678899999999999999999
Q ss_pred hHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 665 SNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 665 ~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
+.+..+.+.+. .+++++++++||....+ ...++.+.+.+||+
T Consensus 239 ~~~~~~~~~~~----~~~~~~i~~~gH~~~~e-~p~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 239 DTSLYLTKHLK----HAELVVLDRCGHWAQLE-RWDAMGPMLMEHFR 280 (281)
T ss_dssp HHHHHHHHHCS----SEEEEEESSCCSCHHHH-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC----CCEEEEECCCCCchHHh-CHHHHHHHHHHHhC
Confidence 88877766553 47899999999976543 34578888999986
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.79 E-value=2.5e-19 Score=172.35 Aligned_cols=220 Identities=15% Similarity=0.147 Sum_probs=134.2
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.+.||++||.+.+ ...|..+++.|+++||.|+++|+|| +|.+...... ........++..++..+... ..+
T Consensus 11 ~~~vvliHG~~~~--~~~~~~l~~~L~~~G~~v~~~D~~G---~G~s~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~ 81 (242)
T d1tqha_ 11 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKG---HGVPPEELVH-TGPDDWWQDVMNGYEFLKNK---GYE 81 (242)
T ss_dssp SCEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTT---SSSCHHHHTT-CCHHHHHHHHHHHHHHHHHH---TCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCC---Cccccccccc-cchhHHHHHHHHHHhhhhhc---ccC
Confidence 4678899996654 5578889999999999999999999 5544322111 11111234444555555444 357
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCc--eeeeccCC------CCCCCC-CCCCChhh
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW--CYVESYGS------KGKDSF-TESPSVED 631 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~-~~~~~~~~ 631 (715)
+++++|||+||.+++.++.++|.....++............... ...+ ........ ...... ........
T Consensus 82 ~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (242)
T d1tqha_ 82 KIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEG-VLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLK 160 (242)
T ss_dssp CEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTHH
T ss_pred ceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHHHH-HHHHHHHHhhhccchhhhHHHHHhhhhhhccchhh
Confidence 89999999999999999999887654444322221100000000 0000 00000000 000000 00000000
Q ss_pred HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 632 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 632 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
............+..+.+|+|+++|++|..+|++.+..+++.+. +..+++++++++||.....+..+++.+.|.+||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~p~lii~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~Fl~ 238 (242)
T d1tqha_ 161 ALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIE--SPVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLE 238 (242)
T ss_dssp HHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCC--CSSEEEEEETTCCSSGGGSTTHHHHHHHHHHHHH
T ss_pred cccccccccccccceeccccceeecccCCccCHHHHHHHHHHcC--CCCcEEEEECCCCCcCccccCHHHHHHHHHHHHH
Confidence 11111122334567889999999999999999999988887763 3468899999999987766667789999999998
Q ss_pred H
Q 005093 712 K 712 (715)
Q Consensus 712 ~ 712 (715)
+
T Consensus 239 ~ 239 (242)
T d1tqha_ 239 S 239 (242)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.79 E-value=8.3e-18 Score=159.19 Aligned_cols=200 Identities=17% Similarity=0.226 Sum_probs=148.8
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCC---CCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP---HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~---~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
.+| +|++++..| .....|++|++||.+ .++........+..|+++||.|+.+||||.+..... .+.
T Consensus 8 ~~G-~Le~~~~~~----~~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G~------~~~ 76 (218)
T d2i3da1 8 PAG-RLEGRYQPS----KEKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGE------FDH 76 (218)
T ss_dssp TTE-EEEEEEECC----SSTTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC------CCS
T ss_pred CCc-cEEEEEeCC----CCCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCccc------ccc
Confidence 345 799987644 345679999999843 222233344567789999999999999996554332 234
Q ss_pred CccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccC
Q 005093 537 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 616 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (715)
+....+|..++++|+..+.. ...++.++|+|+||.+++.++.+.+ ...++++++|.....
T Consensus 77 ~~~e~~d~~aa~~~~~~~~~-~~~~~~~~g~S~G~~~a~~~a~~~~-~~~~~~~~~~~~~~~------------------ 136 (218)
T d2i3da1 77 GAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRP-EIEGFMSIAPQPNTY------------------ 136 (218)
T ss_dssp SHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCT-TEEEEEEESCCTTTS------------------
T ss_pred chhHHHHHHHHHhhhhcccc-cccceeEEeeehHHHHHHHHHHhhc-cccceeecccccccc------------------
Confidence 55568899999999998863 3467899999999999999988765 456666666643210
Q ss_pred CCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHc-CCcEEEEEeCCCCccCCC
Q 005093 617 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK-GVETKVIVFPNDVHGIER 695 (715)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~-g~~~~~~~~~~~~H~~~~ 695 (715)
+...+....+|+|+++|+.|.+++.....++.+.++.. +...++++++|++|.|.
T Consensus 137 -----------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~- 192 (218)
T d2i3da1 137 -----------------------DFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFFN- 192 (218)
T ss_dssp -----------------------CCTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT-
T ss_pred -----------------------chhhccccCCCceeeecccceecChHHHHHHHHHHhhccCCCccEEEeCCCCCCCc-
Confidence 00122335689999999999999999999999888764 56789999999999775
Q ss_pred CCchHHHHHHHHHHHHHhcC
Q 005093 696 PQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 696 ~~~~~~~~~~i~~wl~~~l~ 715 (715)
....++.+.+.+||+++|.
T Consensus 193 -g~~~~l~~~v~~~l~~~l~ 211 (218)
T d2i3da1 193 -GKVDELMGECEDYLDRRLN 211 (218)
T ss_dssp -TCHHHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHhcC
Confidence 3445788999999999873
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.78 E-value=1.7e-18 Score=178.86 Aligned_cols=253 Identities=13% Similarity=0.118 Sum_probs=158.4
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCC----CCCC-c----cchHHHHHHHhCCcEEEEEcCCCCCCCchhh
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH----SVSL-S----SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 528 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~----~~~~-~----~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~ 528 (715)
+-.||++|.+.+|+|+ ..+++|+||+.|+.+. .... . .+....+.|+++||+|+.+|.||.++++..+
T Consensus 30 ~~rDG~~L~~~v~~P~---~~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~~ 106 (381)
T d1mpxa2 30 PMRDGVKLHTVIVLPK---GAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDY 106 (381)
T ss_dssp ECTTSCEEEEEEEEET---TCCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCSCC
T ss_pred ECCCCCEEEEEEEEeC---CCCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEecCccCCCCCce
Confidence 3457899999999998 4678999999996211 1111 1 1223457899999999999999977766554
Q ss_pred hhc-----CCCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccC
Q 005093 529 LQS-----LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 603 (715)
Q Consensus 529 ~~~-----~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~ 603 (715)
... ........++.|+.++|+|+.++..++..||+++|+|+||++++++|+..|+.++++|..+|+.+.......
T Consensus 107 ~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~~~~d~~~~~~~ 186 (381)
T d1mpxa2 107 VMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDW 186 (381)
T ss_dssp CTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCCCTTTTSSS
T ss_pred eccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeecccccccccccc
Confidence 211 112233456899999999999997788899999999999999999999999999999999998875321100
Q ss_pred CCCCC--ceeee----ccCCCCCCCC---CCCCCh------------------------h-------hHHHHHhcCchh-
Q 005093 604 TDIPD--WCYVE----SYGSKGKDSF---TESPSV------------------------E-------DLTRFHSKSPIS- 642 (715)
Q Consensus 604 ~~~~~--~~~~~----~~~~~~~~~~---~~~~~~------------------------~-------~~~~~~~~sp~~- 642 (715)
..... ..... .......... ...... . ..+.+...++..
T Consensus 187 ~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~ 266 (381)
T d1mpxa2 187 FNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYDAFWQEQALDKV 266 (381)
T ss_dssp EETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSCHHHHTTCHHHH
T ss_pred ccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhhCCCccchhhhcCchhh
Confidence 00000 00000 0000000000 000000 0 001222334433
Q ss_pred -hccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHH---cCCcEEEEEeCCCCccCC------------CCCc-hHHHHHH
Q 005093 643 -HISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE---KGVETKVIVFPNDVHGIE------------RPQS-DFESFLN 705 (715)
Q Consensus 643 -~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~~------------~~~~-~~~~~~~ 705 (715)
...++++|+|+++|..|...... +...++.++. .+.+.++++-|. +|.-. ..+. .......
T Consensus 267 ~~~~~i~vP~l~i~G~~d~~~~~~-~~~~~~~~~~~~~~~~~~~LviGPw-~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (381)
T d1mpxa2 267 MARTPLKVPTMWLQGLWDQEDMWG-AIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFEGDTARQFRHDV 344 (381)
T ss_dssp HHTSCCCSCEEEEEETTCSSCSSH-HHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHHHHT
T ss_pred hhhccccCceEEEeccccCCcccc-HHHHHHHHHHhccccCCceEEEecC-cCCCCccCCCcCCccccccchhhhhHHHH
Confidence 34568899999999999766543 4455555543 356788999886 56421 1121 2223455
Q ss_pred HHHHHHHhcC
Q 005093 706 IGLWFKKYCK 715 (715)
Q Consensus 706 i~~wl~~~l~ 715 (715)
+++||++|||
T Consensus 345 ~l~wFD~~LK 354 (381)
T d1mpxa2 345 LRPFFDQYLV 354 (381)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 7899999997
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=4.2e-18 Score=162.84 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=130.8
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCC------CCCchhhhhcCCCCC-Cccc---hhhHHH
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS------LGFGEEALQSLPGKV-GSQD---VNDVLT 546 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~------~~~g~~~~~~~~~~~-~~~~---~~d~~~ 546 (715)
..+..++||++||.+.+ ...|...+..+...++.+++++-+.. ...+..|........ ...+ +++..+
T Consensus 17 ~~~~~~~VI~lHG~G~~--~~~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~ 94 (229)
T d1fj2a_ 17 ARKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAE 94 (229)
T ss_dssp SSCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCC--HHHHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHH
Confidence 34556799999995543 34555566666778999999874321 001111211111011 1111 233333
Q ss_pred HHHHHHH---cCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCC
Q 005093 547 AIDHVID---MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSF 623 (715)
Q Consensus 547 ~i~~l~~---~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (715)
.++.+++ ...++.+||+|+|+|+||.+++.++.++|+++++++++++......... .
T Consensus 95 ~l~~li~~~~~~~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~~--------------~------ 154 (229)
T d1fj2a_ 95 NIKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFP--------------Q------ 154 (229)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSC--------------S------
T ss_pred HHHHHhhhhhhcCCCccceeeeecccchHHHHHHHHhhccccCcccccccccccccccc--------------c------
Confidence 3333322 2348999999999999999999999999999999999988542111100 0
Q ss_pred CCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHc--CCcEEEEEeCCCCccCCCCCchHH
Q 005093 624 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK--GVETKVIVFPNDVHGIERPQSDFE 701 (715)
Q Consensus 624 ~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~--g~~~~~~~~~~~~H~~~~~~~~~~ 701 (715)
.+ ......++|+|++||++|++||.+.+++.++.|++. +.++++++|++.||.+. .+
T Consensus 155 ---------------~~-~~~~~~~~Pvli~hG~~D~~vp~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~-----~~ 213 (229)
T d1fj2a_ 155 ---------------GP-IGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQ 213 (229)
T ss_dssp ---------------SC-CCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HH
T ss_pred ---------------cc-cccccccCceeEEEcCCCCeeCHHHHHHHHHHHHhcCCCCceEEEEeCCCCCccC-----HH
Confidence 00 001123579999999999999999999999999874 56899999999999875 35
Q ss_pred HHHHHHHHHHHhcC
Q 005093 702 SFLNIGLWFKKYCK 715 (715)
Q Consensus 702 ~~~~i~~wl~~~l~ 715 (715)
.++.+.+||+++|.
T Consensus 214 ~~~~~~~wL~~~Lp 227 (229)
T d1fj2a_ 214 EMMDVKQFIDKLLP 227 (229)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhHCc
Confidence 67889999999873
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=1.9e-19 Score=179.08 Aligned_cols=235 Identities=16% Similarity=0.116 Sum_probs=140.0
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
.+-+|.+++...+-. .+..|+||++||++.. ...|...+..++++||.|+++|+|| +|.+.. ....
T Consensus 7 ~~~~g~~i~y~~~g~-----~~~~~~iv~lHG~~g~--~~~~~~~~~~~~~~~~~vi~~D~~G---~G~S~~----~~~~ 72 (290)
T d1mtza_ 7 AKVNGIYIYYKLCKA-----PEEKAKLMTMHGGPGM--SHDYLLSLRDMTKEGITVLFYDQFG---CGRSEE----PDQS 72 (290)
T ss_dssp EEETTEEEEEEEECC-----SSCSEEEEEECCTTTC--CSGGGGGGGGGGGGTEEEEEECCTT---STTSCC----CCGG
T ss_pred EEECCEEEEEEEcCC-----CCCCCeEEEECCCCCc--hHHHHHHHHHHHHCCCEEEEEeCCC---Cccccc----cccc
Confidence 344788887555532 2345889999997654 3355556667788999999999999 555431 1111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc-------cC-------
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-------GT------- 603 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~-------~~------- 603 (715)
...+++..+.+..++++- ...+++.++||||||.+++.+|.++|++++++++.++........ ..
T Consensus 73 ~~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (290)
T d1mtza_ 73 KFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYRD 151 (290)
T ss_dssp GCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHHHH
T ss_pred cccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeecccccCcccchhhhhhhhhhhhHHHHH
Confidence 223444444444444331 124689999999999999999999999999999988765321110 00
Q ss_pred --------CCCCCceee---eccCCCCCCCCCCCCChhhHH---HH---------------------HhcCchhhccCCC
Q 005093 604 --------TDIPDWCYV---ESYGSKGKDSFTESPSVEDLT---RF---------------------HSKSPISHISKVK 648 (715)
Q Consensus 604 --------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~---------------------~~~sp~~~~~~i~ 648 (715)
.......+. ............. ....... .. ...+....+.+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 230 (290)
T d1mtza_ 152 AIKKYGSSGSYENPEYQEAVNYFYHQHLLRSED-WPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIK 230 (290)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSC-CCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGCC
T ss_pred HHHHhhhhccccchhHHHHHHHHhhhhhccccc-chHHHHHHHHHHhhhhhhhhhcchhHHhHhhhhhcccHHHHhhccc
Confidence 000000000 0000000000000 0000000 00 0111223456788
Q ss_pred CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 649 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
+|+|+++|++|.++| ..+..+.+.+ ..+++++++++||....+ ...++.+.|.+||++||
T Consensus 231 ~P~l~i~G~~D~~~~-~~~~~~~~~~----~~~~~~~~~~~gH~~~~e-~p~~~~~~i~~FL~~h~ 290 (290)
T d1mtza_ 231 IPTLITVGEYDEVTP-NVARVIHEKI----AGSELHVFRDCSHLTMWE-DREGYNKLLSDFILKHL 290 (290)
T ss_dssp SCEEEEEETTCSSCH-HHHHHHHHHS----TTCEEEEETTCCSCHHHH-SHHHHHHHHHHHHHTCC
T ss_pred ceEEEEEeCCCCCCH-HHHHHHHHHC----CCCEEEEECCCCCchHHh-CHHHHHHHHHHHHHHhC
Confidence 999999999998764 4455555444 347899999999976544 45578899999999986
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.78 E-value=3.3e-19 Score=185.01 Aligned_cols=245 Identities=15% Similarity=0.137 Sum_probs=144.4
Q ss_pred cCCCCceEEEEEEe--cCCCCCCCCCcEEEEEcCCCCCCCCccc------hHHHHHHHhCCcEEEEEcCCCCCCCchhhh
Q 005093 458 TKGAQKPFEAIFVS--SSHKKDCSCDPLIVVLHGGPHSVSLSSY------SKSLAFLSSVGYSLLIVNYRGSLGFGEEAL 529 (715)
Q Consensus 458 ~~~~g~~l~~~l~~--P~~~~~~~~~P~vv~iHGg~~~~~~~~~------~~~~~~la~~G~~vi~~d~rG~~~~g~~~~ 529 (715)
+..||..|..+-+. +......++.|+||++||.+.+. ..| ..++..|+++||.|+++|+|| +|.+..
T Consensus 33 ~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~--~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG---~G~S~~ 107 (377)
T d1k8qa_ 33 VTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASA--TNWISNLPNNSLAFILADAGYDVWLGNSRG---NTWARR 107 (377)
T ss_dssp ECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCG--GGGSSSCTTTCHHHHHHHTTCEEEECCCTT---STTSCE
T ss_pred EcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccch--hHHhhcCccchHHHHHHHCCCEEEEEcCCC---CCCCCC
Confidence 44577666654332 33334567789999999965542 233 236788999999999999999 444432
Q ss_pred hcCC----CCCC-----ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEec---CCcchh
Q 005093 530 QSLP----GKVG-----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR---NPLCNL 597 (715)
Q Consensus 530 ~~~~----~~~~-----~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~---~~~~~~ 597 (715)
.... .... .....|+.++++++.+.. ..+++.|+||||||.+++.++..+|+.++.+++. +|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~--g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~~~~~~~~~~~~ 185 (377)
T d1k8qa_ 108 NLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATV 185 (377)
T ss_dssp ESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEESCCSCC
T ss_pred CCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHc--CCCCEEEEEecchHHHHHHHHHhhhhhhhhceeEeeccccccc
Confidence 1110 0111 123568889999988863 3578999999999999999999998866554433 222110
Q ss_pred hhh----ccCCCCCC--------------ce-ee-----eccCCC---------------CCCCCC----------CCCC
Q 005093 598 ALM----VGTTDIPD--------------WC-YV-----ESYGSK---------------GKDSFT----------ESPS 628 (715)
Q Consensus 598 ~~~----~~~~~~~~--------------~~-~~-----~~~~~~---------------~~~~~~----------~~~~ 628 (715)
... ........ .. .. ...... ...... ..+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (377)
T d1k8qa_ 186 KYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYLSHNPA 265 (377)
T ss_dssp SSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHHTTCCC
T ss_pred cchhhHHHHHHhcchhhhhhhhhhhhccchhHHHHhhhhhhcchhhhhHHHHhhhhhhcCCCcccccHHHhhhhhhcccc
Confidence 000 00000000 00 00 000000 000000 0000
Q ss_pred ---hhhHHH------------------------HH-hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCc
Q 005093 629 ---VEDLTR------------------------FH-SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 680 (715)
Q Consensus 629 ---~~~~~~------------------------~~-~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~ 680 (715)
...... +. ...+...+.++++|+|+++|++|.+++++.++.+.+.+.. .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~G~~D~~~~~~~~~~l~~~lp~---~ 342 (377)
T d1k8qa_ 266 GTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPN---L 342 (377)
T ss_dssp CEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTCTT---E
T ss_pred cchHHHHHHHHHHHhcCcchhccchhhhhhhhhhcccCchhhhHhhCCCCEEEEEeCCCCccCHHHHHHHHHHCCC---C
Confidence 000000 00 0112224677899999999999999999887777666543 3
Q ss_pred EEEEEeCCCCcc--CCCCCchHHHHHHHHHHHHH
Q 005093 681 TKVIVFPNDVHG--IERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 681 ~~~~~~~~~~H~--~~~~~~~~~~~~~i~~wl~~ 712 (715)
+++++++++||. +...+...+++.+|++||++
T Consensus 343 ~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~ 376 (377)
T d1k8qa_ 343 IYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp EEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred eEEEEeCCCCCcchhhccchHHHHHHHHHHHHhc
Confidence 578899999996 23456677889999999975
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.78 E-value=5.1e-18 Score=167.30 Aligned_cols=229 Identities=15% Similarity=0.186 Sum_probs=137.5
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
..||.+++...+ +..|.||++||.+.+ ...|...++.|+++||.|+++|+|| +|.+... ...
T Consensus 5 t~dG~~l~y~~~--------G~g~~ivlvHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~~ 66 (274)
T d1a8qa_ 5 TRDGVEIFYKDW--------GQGRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRG---HGHSTPV-----WDG 66 (274)
T ss_dssp CTTSCEEEEEEE--------CSSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSC
T ss_pred CcCCCEEEEEEE--------CCCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCC---Ccccccc-----ccc
Confidence 346777764332 134678999996654 5678888889999999999999999 5554321 112
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHh-hCCCceeEEEecCCcchhhhhccCCCCCCce-------
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWC------- 610 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~------- 610 (715)
....+..+.+..+++. ...+++.++|||+||.+++.+++ ..|+++++++++++.................
T Consensus 67 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (274)
T d1a8qa_ 67 YDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVFDALK 144 (274)
T ss_dssp CSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHHHHH
T ss_pred ccchhhHHHHHHHHHH--hhhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhhHHHHHHHH
Confidence 2344544444444444 24578999999999998887655 4588999999888654321111000000000
Q ss_pred ---------e----eeccCCCCCCCCCCCCChhh-------------------HHHHHhcCchhhccCCCCcEEEEeeCC
Q 005093 611 ---------Y----VESYGSKGKDSFTESPSVED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQ 658 (715)
Q Consensus 611 ---------~----~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~sp~~~~~~i~~P~Lii~G~~ 658 (715)
. ...+.. ............ ...+...+....+.++++|+|+++|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~ 222 (274)
T d1a8qa_ 145 NGVLTERSQFWKDTAEGFFS--ANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLVVHGDD 222 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--TTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEETT
T ss_pred hhhhhhhHHHhhhhhhhhhh--ccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHhccceeeeeccCC
Confidence 0 000000 000000000000 011112233345678999999999999
Q ss_pred CCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCC-CCchHHHHHHHHHHHHH
Q 005093 659 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER-PQSDFESFLNIGLWFKK 712 (715)
Q Consensus 659 D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~-~~~~~~~~~~i~~wl~~ 712 (715)
|..++.+...+....+ -..+++++++++||.... .+....+.+.+.+||++
T Consensus 223 D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 223 DQVVPIDATGRKSAQI---IPNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp CSSSCGGGTHHHHHHH---STTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHh---CCCCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 9999987654433322 234789999999997553 34456788889999974
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.77 E-value=5.1e-18 Score=159.91 Aligned_cols=184 Identities=16% Similarity=0.120 Sum_probs=131.1
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC-----ccchhhHHHHHHHH
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-----SQDVNDVLTAIDHV 551 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~-----~~~~~d~~~~i~~l 551 (715)
..+++|+||++||.+.+ ...|..+++.|+. ++.+++++.+.....+..+......... ....+++.+.|+.+
T Consensus 19 ~~~~~p~vv~lHG~g~~--~~~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 95 (209)
T d3b5ea1 19 GKESRECLFLLHGSGVD--ETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEA 95 (209)
T ss_dssp TSSCCCEEEEECCTTBC--TTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCC--HHHHHHHHHHhcc-CcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHH
Confidence 45678999999996654 3456667777754 7889998765322222222111110000 11234566667777
Q ss_pred HHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhh
Q 005093 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 631 (715)
Q Consensus 552 ~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (715)
.++..+|.+||+|+|+|+||.+++.++.++|++++++++++|.....
T Consensus 96 ~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~--------------------------------- 142 (209)
T d3b5ea1 96 AKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD--------------------------------- 142 (209)
T ss_dssp HHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS---------------------------------
T ss_pred HHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc---------------------------------
Confidence 77767899999999999999999999999999999999998853210
Q ss_pred HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 632 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 632 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
+.......++|++++||+.|++++ ..+.++.+.|++.|.+++++++++ +|.+. .+..+.+.+||.
T Consensus 143 --------~~~~~~~~~~p~~~~~G~~D~~~~-~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~-----~~~~~~~~~wl~ 207 (209)
T d3b5ea1 143 --------HVPATDLAGIRTLIIAGAADETYG-PFVPALVTLLSRHGAEVDARIIPS-GHDIG-----DPDAAIVRQWLA 207 (209)
T ss_dssp --------SCCCCCCTTCEEEEEEETTCTTTG-GGHHHHHHHHHHTTCEEEEEEESC-CSCCC-----HHHHHHHHHHHH
T ss_pred --------cccccccccchheeeeccCCCccC-HHHHHHHHHHHHCCCCeEEEEECC-CCCCC-----HHHHHHHHHHhC
Confidence 000112245799999999999987 567889999999999999999987 79885 345677788884
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.76 E-value=3.9e-18 Score=167.93 Aligned_cols=229 Identities=17% Similarity=0.150 Sum_probs=141.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCcc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 539 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~ 539 (715)
+|..++..-+ +..|.||++||.+.... ...|...+..| ++||.|+++|+|| +|.+.. ......
T Consensus 11 ~G~~~~Y~~~--------G~G~pvvllHG~~~~~~~~~~~~~~~~~l-~~~~~vi~~Dl~G---~G~S~~----~~~~~~ 74 (271)
T d1uk8a_ 11 AGVLTNYHDV--------GEGQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVG---FGFTDR----PENYNY 74 (271)
T ss_dssp TTEEEEEEEE--------CCSSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTT---STTSCC----CTTCCC
T ss_pred CCEEEEEEEE--------eeCCeEEEECCCCCCccHHHHHHHHHHHH-hCCCEEEEEeCCC---CCCccc----cccccc
Confidence 6777764322 12467899999654432 22344556666 4699999999999 555431 112223
Q ss_pred chhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh-------hccCCCCCCc--e
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-------MVGTTDIPDW--C 610 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~-------~~~~~~~~~~--~ 610 (715)
..++..+.+..+.+. .+.+++.++||||||.+++.++.++|++++++|+.++...... .......... .
T Consensus 75 ~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (271)
T d1uk8a_ 75 SKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIENMRN 152 (271)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHHHHHH
T ss_pred cccccchhhhhhhhh--hcCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccchhHHHHH
Confidence 466777777777776 3457899999999999999999999999999998877542110 0000000000 0
Q ss_pred eeeccCCCC----------------C----CCCCC-CCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHH
Q 005093 611 YVESYGSKG----------------K----DSFTE-SPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 669 (715)
Q Consensus 611 ~~~~~~~~~----------------~----~~~~~-~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~ 669 (715)
....+.... . ..+.. ..................+.++++|+|+++|++|..+|.+.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~ 232 (271)
T d1uk8a_ 153 LLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLR 232 (271)
T ss_dssp HHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHHHHHH
T ss_pred HHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeEEecCCCCCcCHHHHHH
Confidence 000000000 0 00000 00000000011122234567899999999999999999888877
Q ss_pred HHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 670 YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 670 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+.+.+. .+++++++++||..... ...++.+.|.+||++
T Consensus 233 ~~~~~~----~~~~~~~~~~gH~~~~e-~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 233 LGELID----RAQLHVFGRCGHWTQIE-QTDRFNRLVVEFFNE 270 (271)
T ss_dssp HHHHCT----TEEEEEESSCCSCHHHH-THHHHHHHHHHHHHT
T ss_pred HHHhCC----CCEEEEECCCCCchHHH-CHHHHHHHHHHHHhc
Confidence 766653 47899999999976543 455788999999986
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.76 E-value=2.8e-17 Score=161.84 Aligned_cols=232 Identities=14% Similarity=0.158 Sum_probs=141.0
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
+..||.+|+...+-|+ ..|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... ..
T Consensus 4 ~~~dG~~l~y~~~G~~------~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~s~~~-----~~ 67 (275)
T d1a88a_ 4 TTSDGTNIFYKDWGPR------DGLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRG---HGRSDQP-----ST 67 (275)
T ss_dssp ECTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SS
T ss_pred EecCCCEEEEEEecCC------CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeccc---ccccccc-----cc
Confidence 4568899987777553 34678999997654 5578888899999999999999999 6554321 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeCh-hHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCC--Cce----
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSH-GGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP--DWC---- 610 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~-GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~--~~~---- 610 (715)
....++..+.+..+++. ++.+++.++|||+ ||.++..++.++|+++++++++++.............. ...
T Consensus 68 ~~~~~~~~~~~~~~l~~--l~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (275)
T d1a88a_ 68 GHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFDEF 145 (275)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHHHHH
T ss_pred ccccccccccccccccc--ccccccccccccccccchhhcccccCcchhhhhhhhcccccccccchhhhhhhhhhhhhhh
Confidence 22345555555444444 2456788899887 56666777888999999999988653211110000000 000
Q ss_pred ----------e-eeccCCCCCC--CCCCCCChhhHHH-------------------HHhcCchhhccCCCCcEEEEeeCC
Q 005093 611 ----------Y-VESYGSKGKD--SFTESPSVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQ 658 (715)
Q Consensus 611 ----------~-~~~~~~~~~~--~~~~~~~~~~~~~-------------------~~~~sp~~~~~~i~~P~Lii~G~~ 658 (715)
. .......... ...........+. +...+....+.++++|+|+++|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~ 225 (275)
T d1a88a_ 146 RAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPVLVAHGTD 225 (275)
T ss_dssp HHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEEEEETT
T ss_pred hhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhHHHHhhccccceeecCC
Confidence 0 0000000000 0000000010000 111222334667899999999999
Q ss_pred CCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 659 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 659 D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
|..+|.....+...++ ...+++++++++||....+ ..+++.+.|.+||+
T Consensus 226 D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 226 DQVVPYADAAPKSAEL---LANATLKSYEGLPHGMLST-HPEVLNPDLLAFVK 274 (275)
T ss_dssp CSSSCSTTTHHHHHHH---STTEEEEEETTCCTTHHHH-CHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHh---CCCCEEEEECCCCCchHHh-CHHHHHHHHHHHHc
Confidence 9999987654443332 3358899999999976644 45678899999986
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.76 E-value=2.6e-18 Score=170.56 Aligned_cols=217 Identities=16% Similarity=0.197 Sum_probs=129.7
Q ss_pred CCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
..|+||++||.+... ..|.. .+..+.++||.|+++|+|| +|.+... ........+..+.+..+++.
T Consensus 29 ~G~~ivllHG~~~~~--~~~~~~~~~l~~~~~~g~~v~~~D~~G---~G~S~~~----~~~~~~~~~~~~~i~~li~~-- 97 (283)
T d2rhwa1 29 NGETVIMLHGGGPGA--GGWSNYYRNVGPFVDAGYRVILKDSPG---FNKSDAV----VMDEQRGLVNARAVKGLMDA-- 97 (283)
T ss_dssp CSSEEEEECCCSTTC--CHHHHHTTTHHHHHHTTCEEEEECCTT---STTSCCC----CCSSCHHHHHHHHHHHHHHH--
T ss_pred CCCeEEEECCCCCCh--hHHHHHHHHHHHHHHCCCEEEEEeCCC---Ccccccc----cccccccchhhhhccccccc--
Confidence 347899999966543 23332 3445678999999999999 5554321 11111222333344444443
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCcee-eeccCC-------CCC---CCCCC
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY-VESYGS-------KGK---DSFTE 625 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~---~~~~~ 625 (715)
++.+++.++|||+||.+++.++.++|++++++|+++|..-............... ...... ... .....
T Consensus 98 l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (283)
T d2rhwa1 98 LDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 177 (283)
T ss_dssp HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGG
T ss_pred ccccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhcccc
Confidence 2457899999999999999999999999999999987532111000000000000 000000 000 00000
Q ss_pred CCChhhHH----HH-------------------HhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEE
Q 005093 626 SPSVEDLT----RF-------------------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 682 (715)
Q Consensus 626 ~~~~~~~~----~~-------------------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (715)
....+... .+ ...+....+.++++|+|+++|++|.++|++.+..+.+.+. .++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~----~~~ 253 (283)
T d2rhwa1 178 LITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID----DAR 253 (283)
T ss_dssp GCCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSS----SEE
T ss_pred cCcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCCEEEEEeCCCCCcCHHHHHHHHHhCC----CCE
Confidence 00000000 00 0112234566789999999999999999998888776663 478
Q ss_pred EEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 683 VIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 683 ~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+++++++||.+... ..+++.+.|.+||++
T Consensus 254 ~~~i~~~gH~~~~e-~p~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 254 LHVFSKCGHWAQWE-HADEFNRLVIDFLRH 282 (283)
T ss_dssp EEEESSCCSCHHHH-THHHHHHHHHHHHHH
T ss_pred EEEECCCCCchHHh-CHHHHHHHHHHHHhC
Confidence 99999999976543 355788899999975
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.76 E-value=2.2e-17 Score=176.83 Aligned_cols=320 Identities=12% Similarity=0.044 Sum_probs=189.0
Q ss_pred ccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCc---
Q 005093 12 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--- 87 (715)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--- 87 (715)
......+|++|+.++. ..+++..+ +.+..++|||||++|||+++. +++.++ .+|+..+++....
T Consensus 88 ~s~~~~~~l~d~~~~~--~~~l~~~~-----~~~~~~~~SPDG~~ia~~~~~-----~l~~~~~~~g~~~~~t~~~~~~~ 155 (470)
T d2bgra1 88 HSYTASYDIYDLNKRQ--LITEERIP-----NNTQWVTWSPVGHKLAYVWNN-----DIYVKIEPNLPSYRITWTGKEDI 155 (470)
T ss_dssp SCEEEEEEEEETTTTE--ECCSSCCC-----TTEEEEEECSSTTCEEEEETT-----EEEEESSTTSCCEECCSCCBTTT
T ss_pred eccCceEEEEECCCCc--ccccccCC-----ccccccccccCcceeeEeecc-----cceEEECCCCceeeeeeccCCCc
Confidence 3456788998887664 35555544 778999999999999998765 577777 6777766654211
Q ss_pred ---cccccccCC---CcccceeecCCCCeEEEEeecCCCCCCCccCCC-CCCCCCCcCCCCCCCCCcccCCcCcccCCcc
Q 005093 88 ---TVHGSVYAD---GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGDWEEDWGETYAGKR 160 (715)
Q Consensus 88 ---~~~~~~~~~---~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 160 (715)
+..+++|.. +....+.|||||++|+|...+.... ..+.... .......... ....+ +..|.. ..
T Consensus 156 ~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v-~~~~~~~~~~~~~~~~~~----~~~~~-~~~g~~---~~ 226 (470)
T d2bgra1 156 IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEV-PLIEYSFYSDESLQYPKT----VRVPY-PKAGAV---NP 226 (470)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTC-CEEEEEECCSTTCSSCEE----EEEEC-CBTTSC---CC
T ss_pred ccccccceeeeeeecCCccccEECCCCCccceeEecCCcC-ceEEEEeeccCCCCCCee----eeecc-cccccc---CC
Confidence 111112111 2235688999999999987554321 1111100 0000000000 00001 111221 12
Q ss_pred CceEEEEEccCCceEeecC----------CCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEe
Q 005093 161 QPSLFVININSGEVQAVKG----------IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 230 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~----------~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~ 230 (715)
...+++++++++....+.. ...+.....+.|+++++. +++...+.... ....++.+|
T Consensus 227 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~----~~~~~~r~~~~---------~~~~~~~~d 293 (470)
T d2bgra1 227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI----SLQWLRRIQNY---------SVMDICDYD 293 (470)
T ss_dssp EEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE----EEEEEESSTTE---------EEEEEEEEE
T ss_pred cceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCce----eEEEeeccCCc---------eEEEEEEec
Confidence 3579999998886544310 112223456889999986 66554433211 011455666
Q ss_pred cccccchhhhhhhhccCCCCCCceecCCC------------CccccceeEcCCCCeE-EEEecCCCCCCCCccccceeEe
Q 005093 231 VSLYKSEASELELKESSSEDLPVVNLTES------------ISSAFFPRFSPDGKFL-VFLSAKSSVDSGAHSATDSLHR 297 (715)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~lt~~------------~~~~~~~~~spdg~~l-~~~~~~~~~~~g~~~~~~~l~~ 297 (715)
. .++....+... ......|.|+++++.. ++.+.++ +..+||+
T Consensus 294 ~-----------------~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~d--------g~~~ly~ 348 (470)
T d2bgra1 294 E-----------------SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE--------GYRHICY 348 (470)
T ss_dssp T-----------------TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT--------SCEEEEE
T ss_pred C-----------------CCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccC--------cCceeEE
Confidence 4 44444433210 1123568888888765 4555553 3568999
Q ss_pred eecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeC----CeeEEEEEECCCC-cEEEe
Q 005093 298 IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG----SSQVIISVNVSSG-ELLRI 372 (715)
Q Consensus 298 ~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~l~~~d~~tg-~~~~l 372 (715)
++..++..+++|.+...+.. .++.|++.+||++... ...+||++++.++ +.+.|
T Consensus 349 ~~~~g~~~~~lt~g~~~v~~---------------------~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~l 407 (470)
T d2bgra1 349 FQIDKKDCTFITKGTWEVIG---------------------IEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCL 407 (470)
T ss_dssp EETTCSCCEESCCSSSCEEE---------------------EEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEES
T ss_pred EeccCCceeeeccCCeeEEE---------------------EEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEe
Confidence 99998888888876644332 1445677888877532 3568999999864 45666
Q ss_pred cCCC----CCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 373 TPAE----SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 373 ~~~~----~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+... ..+....|||||+.++..+++++.|.. .+++..++
T Consensus 408 t~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~-~l~~~~~g 450 (470)
T d2bgra1 408 SCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLY-TLHSSVND 450 (470)
T ss_dssp STTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEE-EEEETTTT
T ss_pred cccccCCCCCEEEEEECCCCCEEEEEecCCCCCeE-EEEECCCC
Confidence 5322 234456899999999999999999984 45554444
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=8.2e-18 Score=170.18 Aligned_cols=231 Identities=17% Similarity=0.201 Sum_probs=143.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|.+|+..-. +..|+||++||.+.. ...|...++.|+++||.|+++|+|| +|.+.. +.......
T Consensus 20 ~g~~i~y~~~--------G~gp~vlllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~---~~~~~~~~ 83 (322)
T d1zd3a2 20 PRVRLHFVEL--------GSGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKG---YGESSA---PPEIEEYC 83 (322)
T ss_dssp TTEEEEEEEE--------CCSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEEECTT---STTSCC---CSCGGGGS
T ss_pred CCCEEEEEEE--------cCCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEecccc---cccccc---cccccccc
Confidence 5777764332 134889999996655 5678888999999999999999999 665432 11222234
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhh-------------------hh-
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------------------LM- 600 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~-------------------~~- 600 (715)
.++..+.+..+++. ++.+++.++|||+||.+++.+|.++|++++++|++++..... ..
T Consensus 84 ~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (322)
T d1zd3a2 84 MEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKANPVFDYQLYF 161 (322)
T ss_dssp HHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCCCCSSSCHHHHHHTCGGGHHHHHT
T ss_pred ccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcccccccccccchhhhhhccchhhhHHhh
Confidence 66666666666665 346789999999999999999999999999999887532100 00
Q ss_pred ---------------------ccCCCCC---CceeeeccCC----CCCCCCCCCCChhhHHHH-----------------
Q 005093 601 ---------------------VGTTDIP---DWCYVESYGS----KGKDSFTESPSVEDLTRF----------------- 635 (715)
Q Consensus 601 ---------------------~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----------------- 635 (715)
....... .......... .................+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (322)
T d1zd3a2 162 QEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYR 241 (322)
T ss_dssp TSTTHHHHHHHHTHHHHHHHHSCCTTSCCCCTTSHHHHTSSSTTSCSSCCCCTTCCHHHHHHHHHHHHHHTTHHHHHTTS
T ss_pred hccchhhhhhhhhHHHHHHHHhhccchhhhhHHHHhhhhccccccccchhhhhhccHHHHHHHHHHHhhccccccccccc
Confidence 0000000 0000000000 000000000011111100
Q ss_pred -----HhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHH
Q 005093 636 -----HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 636 -----~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 710 (715)
...++.....++++|+|+++|++|..++++....+.+.+ ...++++++++||.... +...++.+.|.+||
T Consensus 242 ~~~~~~~~~~~~~~~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~~~-e~p~~v~~~i~~FL 316 (322)
T d1zd3a2 242 NMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWI----PHLKRGHIEDCGHWTQM-DKPTEVNQILIKWL 316 (322)
T ss_dssp CHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTC----TTCEEEEETTCCSCHHH-HSHHHHHHHHHHHH
T ss_pred ccccccccchhhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHhC----CCCEEEEECCCCCchHH-hCHHHHHHHHHHHH
Confidence 011122334678899999999999999988766554433 35788999999997653 33457888999999
Q ss_pred HHhc
Q 005093 711 KKYC 714 (715)
Q Consensus 711 ~~~l 714 (715)
+.+-
T Consensus 317 ~~~~ 320 (322)
T d1zd3a2 317 DSDA 320 (322)
T ss_dssp HHHT
T ss_pred hhcC
Confidence 9864
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.75 E-value=1.5e-17 Score=163.40 Aligned_cols=231 Identities=13% Similarity=0.124 Sum_probs=137.8
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~-~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
+.+|.+++.. -. + ..|.||++||++.... ...|...+..| ++||.|+++|+|| +|.+.. ...
T Consensus 8 ~~dg~~l~y~---~~---G--~g~~vvllHG~~~~~~~~~~~~~~~~~l-~~~~~v~~~D~~G---~G~S~~-----~~~ 70 (268)
T d1j1ia_ 8 NAGGVETRYL---EA---G--KGQPVILIHGGGAGAESEGNWRNVIPIL-ARHYRVIAMDMLG---FGKTAK-----PDI 70 (268)
T ss_dssp EETTEEEEEE---EE---C--CSSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTT---STTSCC-----CSS
T ss_pred EECCEEEEEE---EE---c--CCCeEEEECCCCCCccHHHHHHHHHHHH-hcCCEEEEEcccc---cccccC-----Ccc
Confidence 3478888632 22 1 2366899999664422 22455666777 5699999999999 555431 111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCC-CCCCceeee---
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-DIPDWCYVE--- 613 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~--- 613 (715)
....++....+..+++.-.+ ..++.++|||+||.+++.+|.++|++++++|+++|........... ....+....
T Consensus 71 ~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (268)
T d1j1ia_ 71 EYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGM 149 (268)
T ss_dssp CCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHH
T ss_pred ccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhhhh
Confidence 22355555555555554222 2579999999999999999999999999999988753211110000 000000000
Q ss_pred -ccCCCCCCCCCCCCChhhH-------------------HHHH----hcCchhhccCCCCcEEEEeeCCCCcCCchHHHH
Q 005093 614 -SYGSKGKDSFTESPSVEDL-------------------TRFH----SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 669 (715)
Q Consensus 614 -~~~~~~~~~~~~~~~~~~~-------------------~~~~----~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~ 669 (715)
................... ..+. .......+.++++|+|+++|++|..+|++.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~ 229 (268)
T d1j1ia_ 150 VHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETAYK 229 (268)
T ss_dssp HHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEeCCCCCCCHHHHHH
Confidence 0000000000000000000 0000 111223467889999999999999999888777
Q ss_pred HHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 670 YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 670 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+.+.+. .+++++++++||.... +...++.+.|.+||.+
T Consensus 230 ~~~~~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 230 FLDLID----DSWGYIIPHCGHWAMI-EHPEDFANATLSFLSL 267 (268)
T ss_dssp HHHHCT----TEEEEEESSCCSCHHH-HSHHHHHHHHHHHHHH
T ss_pred HHHhCC----CCEEEEECCCCCchHH-hCHHHHHHHHHHHHcC
Confidence 666553 4899999999997653 3456788999999975
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.75 E-value=4.7e-17 Score=159.67 Aligned_cols=233 Identities=16% Similarity=0.164 Sum_probs=142.9
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
+|.+.+|.+|+...+ +..|.||++||++.+ ...|...++.|+++||.|+++|+|| +|.+.. .
T Consensus 2 ~f~~~dG~~l~y~~~--------G~g~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~-----~ 63 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDW--------GSGKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRG---FGRSDQ-----P 63 (271)
T ss_dssp EEECTTSCEEEEEEE--------SSSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTT---STTSCC-----C
T ss_pred EEEeECCeEEEEEEE--------cCCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeccc---cccccc-----c
Confidence 345668888864332 123568899997654 5678888899999999999999999 555431 1
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHH-HHHhhCCCceeEEEecCCcchhhhhccCCCCC-Cceee-
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT-HLIGQAPDKFVAAAARNPLCNLALMVGTTDIP-DWCYV- 612 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~-~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~- 612 (715)
......++..+.+..+.+. ++.+++.++|||+||.+++ .++.++|+++++++++++.............. .....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (271)
T d1va4a_ 64 WTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFA 141 (271)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSBCHHHHH
T ss_pred ccccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhhhhhHHH
Confidence 2223456666666555555 3457899999999887665 45667899999999887754321110000000 00000
Q ss_pred --------------eccCCCC-CCCCCCCCChh-------------------hHHHHHhcCchhhccCCCCcEEEEeeCC
Q 005093 613 --------------ESYGSKG-KDSFTESPSVE-------------------DLTRFHSKSPISHISKVKTPTIFLLGAQ 658 (715)
Q Consensus 613 --------------~~~~~~~-~~~~~~~~~~~-------------------~~~~~~~~sp~~~~~~i~~P~Lii~G~~ 658 (715)
..+.... ........... ....+...+....+.++++|+|+++|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~g~~ 221 (271)
T d1va4a_ 142 RFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDG 221 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEEEEETT
T ss_pred HHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhhcccceeecccCC
Confidence 0000000 00000000000 0011112233345678899999999999
Q ss_pred CCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 659 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 659 D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
|..+|++.+.++.+.+. ..+++++++++||....+ ..+++.+.|.+||++
T Consensus 222 D~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fL~k 271 (271)
T d1va4a_ 222 DQIVPFETTGKVAAELI---KGAELKVYKDAPHGFAVT-HAQQLNEDLLAFLKR 271 (271)
T ss_dssp CSSSCGGGTHHHHHHHS---TTCEEEEETTCCTTHHHH-THHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHhC---CCCEEEEECCCCCchHHh-CHHHHHHHHHHHHCc
Confidence 99999888777665542 347889999999976543 445788899999874
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.74 E-value=4.1e-17 Score=160.88 Aligned_cols=217 Identities=17% Similarity=0.222 Sum_probs=129.4
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
+.|.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+... ......+++.+.+..+++. +..
T Consensus 22 ~G~~ivllHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~~~~~~~~~~dl~~~l~~--l~~ 89 (277)
T d1brta_ 22 TGQPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRG---FGQSSQP-----TTGYDYDTFAADLNTVLET--LDL 89 (277)
T ss_dssp SSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSCCSHHHHHHHHHHHHHH--HTC
T ss_pred cCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeCCC---CCccccc-----ccccchhhhhhhhhhhhhc--cCc
Confidence 45779999996654 5678888889999999999999999 5554311 1122355555555544444 245
Q ss_pred ceEEEEEeChhH-HHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCc--e---------------eeecc-CC--C
Q 005093 560 SKVTVVGGSHGG-FLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW--C---------------YVESY-GS--K 618 (715)
Q Consensus 560 ~~i~l~G~S~GG-~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~--~---------------~~~~~-~~--~ 618 (715)
+++.++|||+|| .++..++..+|++++++|+++++............... . ....+ .. .
T Consensus 90 ~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (277)
T d1brta_ 90 QDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYN 169 (277)
T ss_dssp CSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchhhhhhccccccc
Confidence 789999999996 55666677789999999998875432111000000000 0 00000 00 0
Q ss_pred CCCCCCCCCChhhHHHH------------------HhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCc
Q 005093 619 GKDSFTESPSVEDLTRF------------------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 680 (715)
Q Consensus 619 ~~~~~~~~~~~~~~~~~------------------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~ 680 (715)
................. ...+....+.++++|+|+++|++|..++.+...+.... ....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~---~~~~ 246 (277)
T d1brta_ 170 LDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHK---ALPS 246 (277)
T ss_dssp HHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHH---HCTT
T ss_pred cchhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCccceeEeecCCCCcCHHHHHHHHHH---hCCC
Confidence 00000000000000000 00112234567889999999999999988765443332 2345
Q ss_pred EEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 681 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 681 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+++++++++||....+ ...++.+.|.+||++
T Consensus 247 ~~~~~i~~~gH~~~~e-~p~~~~~~i~~fL~k 277 (277)
T d1brta_ 247 AEYVEVEGAPHGLLWT-HAEEVNTALLAFLAK 277 (277)
T ss_dssp SEEEEETTCCTTHHHH-THHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCchHHh-CHHHHHHHHHHHHCc
Confidence 7899999999976543 455788999999974
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.74 E-value=8.5e-17 Score=158.17 Aligned_cols=232 Identities=16% Similarity=0.205 Sum_probs=141.0
Q ss_pred cccCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC
Q 005093 456 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 535 (715)
Q Consensus 456 ~~~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~ 535 (715)
+|+..||..++.... +..|.||++||.+.. ...|...+..|+++||.|+++|+|| +|.+.. .
T Consensus 2 ~f~~~dG~~i~y~~~--------G~g~pvvllHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~-----~ 63 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW--------GSGQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRG---HGRSSQ-----P 63 (273)
T ss_dssp EEECTTSCEEEEEEE--------SCSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCC-----C
T ss_pred EEEeeCCcEEEEEEE--------CCCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEechh---cCcccc-----c
Confidence 456778888865432 134568899996654 5678888999999999999999999 555432 1
Q ss_pred CCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHH-HHhhCCCceeEEEecCCcchhhhhccCCCCCCce----
Q 005093 536 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH-LIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC---- 610 (715)
Q Consensus 536 ~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~-~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~---- 610 (715)
.......+..+.+..+++. .+.++..++|||+||.+++. ++..+|+++++++++++.................
T Consensus 64 ~~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 141 (273)
T d1a8sa_ 64 WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFD 141 (273)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHH
T ss_pred cccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccchhhhhh
Confidence 1123455666555555554 24567889999998865554 5566799999998887654221110000000000
Q ss_pred ------------eeecc-CCC--CCCCCCCCCChhhHH-------------------HHHhcCchhhccCCCCcEEEEee
Q 005093 611 ------------YVESY-GSK--GKDSFTESPSVEDLT-------------------RFHSKSPISHISKVKTPTIFLLG 656 (715)
Q Consensus 611 ------------~~~~~-~~~--~~~~~~~~~~~~~~~-------------------~~~~~sp~~~~~~i~~P~Lii~G 656 (715)
....+ ... ..............+ .+...+....+.++++|+|+++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~g 221 (273)
T d1a8sa_ 142 GIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHG 221 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHhhccceEEEec
Confidence 00000 000 000000000000000 11123333456788999999999
Q ss_pred CCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 657 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 657 ~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
++|..+|.+.+..+.+.+ ...+++++++++||..... +.+++.+.|.+||+
T Consensus 222 ~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 222 DADQVVPIEASGIASAAL---VKGSTLKIYSGAPHGLTDT-HKDQLNADLLAFIK 272 (273)
T ss_dssp TTCSSSCSTTTHHHHHHH---STTCEEEEETTCCSCHHHH-THHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh---CCCCEEEEECCCCCchHHh-CHHHHHHHHHHHcC
Confidence 999999988777666554 2347889999999976543 45578889999986
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.74 E-value=1.3e-17 Score=154.14 Aligned_cols=180 Identities=14% Similarity=0.094 Sum_probs=118.3
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceE
Q 005093 483 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 562 (715)
Q Consensus 483 ~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i 562 (715)
-||++||...+.....+..+.+.|+++||.|+++|++|.+. + ..++..+.++.+.. ....++
T Consensus 3 ~V~~vHG~~~~~~~~~~~~l~~~L~~~G~~v~~~d~p~~~~---~------------~~~~~~~~l~~~~~---~~~~~~ 64 (186)
T d1uxoa_ 3 QVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQ---P------------RLEDWLDTLSLYQH---TLHENT 64 (186)
T ss_dssp EEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCTTS---C------------CHHHHHHHHHTTGG---GCCTTE
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHhCCCEEEEeccCCCCc---c------------hHHHHHHHHHHHHh---ccCCCc
Confidence 58999996554333335667889999999999999998322 1 24455555544443 346889
Q ss_pred EEEEeChhHHHHHHHHhhCCCce--eEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCc
Q 005093 563 TVVGGSHGGFLTTHLIGQAPDKF--VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 640 (715)
Q Consensus 563 ~l~G~S~GG~~a~~~a~~~p~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 640 (715)
+|+||||||.+++.++.+++... .++++.++...... .+..... +.... .+
T Consensus 65 ~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~--------~~~~~-----------~~ 117 (186)
T d1uxoa_ 65 YLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLP--------TLQMLDE--------FTQGS-----------FD 117 (186)
T ss_dssp EEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCT--------TCGGGGG--------GTCSC-----------CC
T ss_pred EEEEechhhHHHHHHHHhCCccceeeEEeecccccccch--------hhhhhhh--------hhccc-----------cc
Confidence 99999999999999999988643 44444444322110 0000000 00000 11
Q ss_pred hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCC--CchHHHHHHHHHHHHH
Q 005093 641 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP--QSDFESFLNIGLWFKK 712 (715)
Q Consensus 641 ~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~wl~~ 712 (715)
.....++.+|+|++||++|++||++.+..+++.+ ++++++++++||..... .....+.+.+.+||.+
T Consensus 118 ~~~~~~~~~p~lvi~g~~D~~vp~~~~~~l~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~~ 186 (186)
T d1uxoa_ 118 HQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQI-----DAALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFSK 186 (186)
T ss_dssp HHHHHHHEEEEEEEEETTCSSSCHHHHHHHHHHT-----TCEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHHC
T ss_pred ccccccCCCCEEEEecCCCCCCCHHHHHHHHHHc-----CCEEEEeCCCCCcCccccCcccHHHHHHHHHHHcC
Confidence 1122234579999999999999999999988876 26799999999965432 3334677778888753
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.74 E-value=3.1e-17 Score=159.14 Aligned_cols=218 Identities=16% Similarity=0.119 Sum_probs=135.5
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.... .......+....+..+.... ....
T Consensus 2 G~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~Dl~G---~G~S~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~ 71 (258)
T d1xkla_ 2 GKHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAA---SGTDLRKI----EELRTLYDYTLPLMELMESL-SADE 71 (258)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTT---STTCCCCG----GGCCSHHHHHHHHHHHHHTS-CSSS
T ss_pred CCcEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEecCCC---CCCCCCCC----CCCcchHHHHHHHhhhhhcc-cccc
Confidence 3679999996654 5678889999999999999999999 55543110 11123445444444444443 2346
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh---------ccCC---CCCCceeeeccCCCC---------
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------VGTT---DIPDWCYVESYGSKG--------- 619 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~--------- 619 (715)
++.++|||+||.+++.++.++|++++.+|++++....... .... ...............
T Consensus 72 ~~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T d1xkla_ 72 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGP 151 (258)
T ss_dssp CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCH
T ss_pred cccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccccccH
Confidence 8999999999999999999999999999998875421100 0000 000000000000000
Q ss_pred ---CCCCCCCCChhhHH--------------HHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEE
Q 005093 620 ---KDSFTESPSVEDLT--------------RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 682 (715)
Q Consensus 620 ---~~~~~~~~~~~~~~--------------~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (715)
.............. .............+++|+++++|++|..+|++....+.+.+. .++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~ 227 (258)
T d1xkla_ 152 KFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIG----VTE 227 (258)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHC----CSE
T ss_pred HHHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCCHHHHHHHHHHCC----CCE
Confidence 00000000011100 011122223445667999999999999999888877776663 478
Q ss_pred EEEeCCCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 683 VIVFPNDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 683 ~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
+++++++||..... ..+++.+.|++|+++|
T Consensus 228 ~~~i~~~gH~~~~e-~P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 228 AIEIKGADHMAMLC-EPQKLCASLLEIAHKY 257 (258)
T ss_dssp EEEETTCCSCHHHH-SHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCchHHh-CHHHHHHHHHHHHHhc
Confidence 89999999976544 3458889999999886
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.73 E-value=1e-16 Score=158.49 Aligned_cols=251 Identities=14% Similarity=0.088 Sum_probs=160.9
Q ss_pred eeCCC--CceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCc
Q 005093 49 VPSPS--GSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 125 (715)
Q Consensus 49 ~~Spd--g~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 125 (715)
.+||| |++|||+++. +||.++ .+|+.++|+..+... ..++|||||++|||.+......
T Consensus 5 ~~sPdi~G~~v~f~~~~-----dl~~~d~~~g~~~~Lt~~~~~~----------~~p~~SPDG~~iaf~~~~~~~~---- 65 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCD-----DLWEHDLKSGSTRKIVSNLGVI----------NNARFFPDGRKIAIRVMRGSSL---- 65 (281)
T ss_dssp CEEEEEETTEEEEEETT-----EEEEEETTTCCEEEEECSSSEE----------EEEEECTTSSEEEEEEEESTTC----
T ss_pred ccCCCCCCCEEEEEeCC-----cEEEEECCCCCEEEEecCCCcc----------cCEEECCCCCEEEEEEeeCCCC----
Confidence 56899 9999999765 599999 888999988765544 7899999999999987643110
Q ss_pred cCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCC-----CCccceEEEecCCCCCcc
Q 005093 126 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-----~~~~~~~~~spdg~~~~~ 200 (715)
...+||++++.+|+.++|+.... ......+.|||||+.
T Consensus 66 ----------------------------------~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~--- 108 (281)
T d1k32a2 66 ----------------------------------NTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL--- 108 (281)
T ss_dssp ----------------------------------CEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE---
T ss_pred ----------------------------------CceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE---
Confidence 12679999999999999941111 123456789999999
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEec
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
|+|+...... .....++.++. .++..+.... ....+.|++||..+++...
T Consensus 109 -l~~~~~~~~~---------~~~~~~~~~~~-----------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 158 (281)
T d1k32a2 109 -IISTDAMQPF---------SSMTCLYRVEN-----------------DGINFVPLNL---GPATHILFADGRRVIGRNT 158 (281)
T ss_dssp -EEEECTTSSS---------TTCCEEEEEEG-----------------GGTEEEECCS---CSCSEEEEETTEEEEEESC
T ss_pred -EEEEEccCCC---------ccceeeeeecC-----------------CCceeEEecC---CccceeeecCCCeEEEeec
Confidence 9998644321 12234667775 5555555443 2345678888888887765
Q ss_pred CCCCCC-CCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 005093 281 KSSVDS-GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 359 (715)
Q Consensus 281 ~~~~~~-g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l 359 (715)
...... .....................+ ..... ....+.|++ ..+++.....+..+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~----------~~~~~~~~~--~~~~~~~~~~~~~~l 216 (281)
T d1k32a2 159 FELPHWKGYRGGTRGKIWIEVNSGAFKKI----------VDMST----------HVSSPVIVG--HRIYFITDIDGFGQI 216 (281)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTEEEEE----------ECCSS----------CCEEEEEET--TEEEEEECTTSSCEE
T ss_pred cccceeeeeccCCcceeeeeccccceeec----------cCCcc----------ccceeeeec--cccceecccccccce
Confidence 542110 0000001111111111111000 00000 111233443 357777777788899
Q ss_pred EEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 360 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 360 ~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
|.+|+++++.++|+.... .....+|+||+.|+|... .+||++++.+++
T Consensus 217 ~~~d~~g~~~~~lt~~~~-~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g~ 264 (281)
T d1k32a2 217 YSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFSKG-----GSIYIFNPDTEK 264 (281)
T ss_dssp EEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEEET-----TEEEEECTTTCC
T ss_pred EEEeCCCCceEEeecCCC-cccccCcCCCCEEEEEeC-----CEEEEEECCCCC
Confidence 999999999999987654 334579999999998663 369999987664
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.73 E-value=2.5e-18 Score=171.16 Aligned_cols=227 Identities=14% Similarity=0.207 Sum_probs=141.6
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
+-+|.+++...+-| +..|+||++||.+.+ ...|...++.|+ +||.|+++|+|| +|.+.. + ...
T Consensus 13 ~~~g~~i~y~~~G~------~~~p~lvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~d~~G---~G~S~~---~--~~~ 75 (291)
T d1bn7a_ 13 EVLGERMHYVDVGP------RDGTPVLFLHGNPTS--SYLWRNIIPHVA-PSHRCIAPDLIG---MGKSDK---P--DLD 75 (291)
T ss_dssp EETTEEEEEEEESC------SSSSCEEEECCTTCC--GGGGTTTHHHHT-TTSCEEEECCTT---STTSCC---C--SCC
T ss_pred EECCEEEEEEEeCC------CCCCeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEEeCCC---Cccccc---c--ccc
Confidence 34678887655433 234679999996655 456777788884 599999999999 555431 1 112
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc-------------CCC
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------------TTD 605 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-------------~~~ 605 (715)
...++..+.+..+++. ++.+++.|+|||+||.+++.++.++|+++++++++++......... ...
T Consensus 76 ~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (291)
T d1bn7a_ 76 YFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRTAD 153 (291)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCHHHHHHHHHHTSTT
T ss_pred cchhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhhhhhhHHHHHhhhh
Confidence 3466677777766666 3457899999999999999999999999999988764432110000 000
Q ss_pred C------CCceeeeccCCCCCCCCCCCCChhhHHHHH-----------------hc--------------CchhhccCCC
Q 005093 606 I------PDWCYVESYGSKGKDSFTESPSVEDLTRFH-----------------SK--------------SPISHISKVK 648 (715)
Q Consensus 606 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------------sp~~~~~~i~ 648 (715)
. ....+..... ...............+. .. .....+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 230 (291)
T d1bn7a_ 154 VGRELIIDQNAFIEGVL---PKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVEAYMNWLHQSP 230 (291)
T ss_dssp HHHHHHTTSCHHHHTHH---HHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCC
T ss_pred hHHHhhhhhhhhHHhhh---hhhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhcCC
Confidence 0 0000000000 00000000000000000 00 0112345788
Q ss_pred CcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 649 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+|+|+++|++|..+|.+.+..+.+.+. .+++++++++||....+ ..+++.+.+.+||+.
T Consensus 231 ~P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~~e-~p~~v~~~i~~fL~~ 289 (291)
T d1bn7a_ 231 VPKLLFWGTPGVLIPPAEAARLAESLP----NCKTVDIGPGLHYLQED-NPDLIGSEIARWLPG 289 (291)
T ss_dssp SCEEEEEEEECSSSCHHHHHHHHHHST----TEEEEEEEEESSCGGGT-CHHHHHHHHHHHSGG
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHCC----CCEEEEECCCCCchHHh-CHHHHHHHHHHHHHh
Confidence 999999999999999888777766653 47899999999976544 345788889999864
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.73 E-value=1.2e-17 Score=156.74 Aligned_cols=185 Identities=20% Similarity=0.196 Sum_probs=129.0
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHH---
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID--- 553 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~--- 553 (715)
..++.|+||++||++.. ...|...++.++ .++.|+.++.+... .+..... ........+..++...++.+..
T Consensus 13 ~~~~~P~vi~lHG~G~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (203)
T d2r8ba1 13 GVAGAPLFVLLHGTGGD--ENQFFDFGARLL-PQATILSPVGDVSE-HGAARFF-RRTGEGVYDMVDLERATGKMADFIK 87 (203)
T ss_dssp CCTTSCEEEEECCTTCC--HHHHHHHHHHHS-TTSEEEEECCSEEE-TTEEESS-CBCGGGCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCeEEEecccccc-ccccccc-cccCccccchhHHHHHHHHHHHHHH
Confidence 45678999999996544 345666666664 57888888765321 1111100 0111112223344333333322
Q ss_pred --cCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhh
Q 005093 554 --MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 631 (715)
Q Consensus 554 --~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (715)
...++.++++++|+|+||.+++.++..+|+.+.++++.++.......
T Consensus 88 ~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~~------------------------------- 136 (203)
T d2r8ba1 88 ANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPK------------------------------- 136 (203)
T ss_dssp HHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCCC-------------------------------
T ss_pred HhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeeccccccccc-------------------------------
Confidence 12267899999999999999999999999999999999886421000
Q ss_pred HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHH
Q 005093 632 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 711 (715)
Q Consensus 632 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 711 (715)
.......+|++++||++|++||++++++++++|++.|.+++++++++ ||++. .+.++.+.+||.
T Consensus 137 ----------~~~~~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~~~g-gH~~~-----~~~~~~~~~wl~ 200 (203)
T d2r8ba1 137 ----------ISPAKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPG-GHEIR-----SGEIDAVRGFLA 200 (203)
T ss_dssp ----------CCCCCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEEEEESS-CSSCC-----HHHHHHHHHHHG
T ss_pred ----------cccccccchhhccccCCCCcccHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHH
Confidence 00112347999999999999999999999999999999999999987 79875 356788999998
Q ss_pred Hh
Q 005093 712 KY 713 (715)
Q Consensus 712 ~~ 713 (715)
+|
T Consensus 201 ~~ 202 (203)
T d2r8ba1 201 AY 202 (203)
T ss_dssp GG
T ss_pred hc
Confidence 76
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.73 E-value=9.4e-17 Score=158.79 Aligned_cols=248 Identities=8% Similarity=0.002 Sum_probs=164.4
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCC--CCeEEEEe-cCCccEEEEecCccccccc
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSV 93 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 93 (715)
+||++|++++ ++++||..+ +.+..|+|||||++|||+..+++. ..++|.+. .+|+.++++..........
T Consensus 22 dl~~~d~~~g--~~~~Lt~~~-----~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~ 94 (281)
T d1k32a2 22 DLWEHDLKSG--STRKIVSNL-----GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRR 94 (281)
T ss_dssp EEEEEETTTC--CEEEEECSS-----SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTE
T ss_pred cEEEEECCCC--CEEEEecCC-----CcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcc
Confidence 7999877655 568888877 778999999999999999876532 24688888 7778777765432211000
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 173 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 173 (715)
.....+.|||||+.|+|........ ....++.++.++++
T Consensus 95 ---~~~~~~~~spdg~~l~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~ 133 (281)
T d1k32a2 95 ---MFTDVAGFDPDGNLIISTDAMQPFS--------------------------------------SMTCLYRVENDGIN 133 (281)
T ss_dssp ---ECSEEEEECTTCCEEEEECTTSSST--------------------------------------TCCEEEEEEGGGTE
T ss_pred ---ccccccccCCCCCEEEEEEccCCCc--------------------------------------cceeeeeecCCCce
Confidence 0124788999999999974432110 22568889999888
Q ss_pred eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc
Q 005093 174 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 253 (715)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (715)
.+.. ... .....|++|+.. +++............ ............ .....
T Consensus 134 ~~~~--~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----------------~~~~~ 184 (281)
T d1k32a2 134 FVPL--NLG---PATHILFADGRR----VIGRNTFELPHWKGY---RGGTRGKIWIEV-----------------NSGAF 184 (281)
T ss_dssp EEEC--CSC---SCSEEEEETTEE----EEEESCSCCTTSTTC---CSTTCCEEEEEE-----------------ETTEE
T ss_pred eEEe--cCC---ccceeeecCCCe----EEEeeccccceeeee---ccCCcceeeeec-----------------cccce
Confidence 8776 222 234578888888 777654333211111 011112223332 34555
Q ss_pred eecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccC
Q 005093 254 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 333 (715)
Q Consensus 254 ~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~ 333 (715)
..++........|.++++ .+++..... ...+||++|+.+++.++||....
T Consensus 185 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~l~~~d~~g~~~~~lt~~~~-------------------- 234 (281)
T d1k32a2 185 KKIVDMSTHVSSPVIVGH--RIYFITDID--------GFGQIYSTDLDGKDLRKHTSFTD-------------------- 234 (281)
T ss_dssp EEEECCSSCCEEEEEETT--EEEEEECTT--------SSCEEEEEETTSCSCEECCCCCS--------------------
T ss_pred eeccCCccccceeeeecc--ccceecccc--------cccceEEEeCCCCceEEeecCCC--------------------
Confidence 666666667778888876 577777653 34679999999988877764321
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 005093 334 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 376 (715)
Q Consensus 334 ~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 376 (715)
.....|+|||+.|+|... ..||.+|+++|+.++|....
T Consensus 235 -~~~~~~SpDG~~I~f~~~----~~l~~~d~~~g~~~~i~~~~ 272 (281)
T d1k32a2 235 -YYPRHLNTDGRRILFSKG----GSIYIFNPDTEKIEKIEIGD 272 (281)
T ss_dssp -SCEEEEEESSSCEEEEET----TEEEEECTTTCCEEECCCCC
T ss_pred -cccccCcCCCCEEEEEeC----CEEEEEECCCCCEEEeccCC
Confidence 112358999999998653 36999999999999997644
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.72 E-value=4e-18 Score=171.70 Aligned_cols=236 Identities=12% Similarity=0.116 Sum_probs=142.3
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
...+|.+++..-.-+ ....|+||++||.+.. ...|...+..|+++||.|+++|+|| +|.+.. +....
T Consensus 29 ~~~~g~~~~y~~~G~-----~~~~p~llllHG~~~~--~~~~~~~~~~l~~~~~~vi~~Dl~G---~G~S~~---~~~~~ 95 (310)
T d1b6ga_ 29 PGYPGLRAHYLDEGN-----SDAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFG---FGKSDK---PVDEE 95 (310)
T ss_dssp TTCTTCEEEEEEEEC-----TTCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCE---ESCGG
T ss_pred cCCCCEEEEEEEecC-----CCCCCEEEEECCCCCc--hHHHHHHHHHhhccCceEEEeeecC---cccccc---ccccc
Confidence 345788887443322 2346899999996654 5678888899999999999999999 665532 11112
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh--------ccCCCCCCc
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--------VGTTDIPDW 609 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~--------~~~~~~~~~ 609 (715)
....++..+.+..+++. .+.+++.|+||||||.+++.+|.++|++++++|++++....... .........
T Consensus 96 ~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (310)
T d1b6ga_ 96 DYTFEFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFT 173 (310)
T ss_dssp GCCHHHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTHH
T ss_pred cccccccccchhhhhhh--ccccccccccceecccccccchhhhccccceEEEEcCccCCCcccchhHHHHhhcchhhhh
Confidence 22466677766666665 34578999999999999999999999999999998775321100 000000000
Q ss_pred -----------ee----eeccCCCC--------CCCCCCCCChhhHHHHH----hcC----------chhhccCCCCcEE
Q 005093 610 -----------CY----VESYGSKG--------KDSFTESPSVEDLTRFH----SKS----------PISHISKVKTPTI 652 (715)
Q Consensus 610 -----------~~----~~~~~~~~--------~~~~~~~~~~~~~~~~~----~~s----------p~~~~~~i~~P~L 652 (715)
.. ........ ...+...........+. ... ......++++|+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l 253 (310)
T d1b6ga_ 174 AWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDWNGQTF 253 (310)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSEEE
T ss_pred hhhhhhccchhhhhhhhhhccCccccHHHHHHHHhhcchhhhhhcchhhhhhhhhhhhhhhhhhhhhhHHhhcccCCCeE
Confidence 00 00000000 00000000000000000 000 0012356889999
Q ss_pred EEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 653 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 653 ii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+++|++|..++.+....+.+.+.. ..++++++++||... .+..+.+.+.|.+|++.
T Consensus 254 ~i~G~~D~~~~~~~~~~~~~~~~~---~~~~~~i~~~GH~~~-~e~pe~v~~~i~~Fl~~ 309 (310)
T d1b6ga_ 254 MAIGMKDKLLGPDVMYPMKALING---CPEPLEIADAGHFVQ-EFGEQVAREALKHFAET 309 (310)
T ss_dssp EEEETTCSSSSHHHHHHHHHHSTT---CCCCEEETTCCSCGG-GGHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCC---CccEEEECCCcCchh-hhCHHHHHHHHHHHHhC
Confidence 999999999988877666655533 235778999999654 44455666677777763
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.72 E-value=1.4e-16 Score=155.24 Aligned_cols=192 Identities=11% Similarity=-0.054 Sum_probs=126.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc----cc-hHHHHHHHhCC----cEEEEEcCCCCCCCchhhhh
Q 005093 460 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS----SY-SKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQ 530 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~----~~-~~~~~~la~~G----~~vi~~d~rG~~~~g~~~~~ 530 (715)
.+|.++++++|+|+++++++++|+|+++||++...... .. ......+...+ +.+...+.......
T Consensus 31 ~~g~~~~~~v~lP~~y~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 104 (255)
T d1jjfa_ 31 ATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGPG------ 104 (255)
T ss_dssp TTTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCCCCTT------
T ss_pred CCCCEEEEEEEeCCCCCCCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeeccccccccc------
Confidence 36789999999999998899999999999966543221 11 11223333332 34444443321110
Q ss_pred cCCCCCCc-cchhhHHHHHHHHHHc--CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCC
Q 005093 531 SLPGKVGS-QDVNDVLTAIDHVIDM--GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP 607 (715)
Q Consensus 531 ~~~~~~~~-~~~~d~~~~i~~l~~~--~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~ 607 (715)
...... .....+.+.+.++.++ ..+|.++++++|+|+||++++.++.++|++|+++++++|..+....
T Consensus 105 --~~~~~~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~~~~~~------- 175 (255)
T d1jjfa_ 105 --IADGYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPN------- 175 (255)
T ss_dssp --CSCHHHHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTTSCCH-------
T ss_pred --ccccccchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCcCCccc-------
Confidence 000000 1112233445555553 3378899999999999999999999999999999999886532100
Q ss_pred CceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeC
Q 005093 608 DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 687 (715)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (715)
......+.........|+++.||++|..++ ..++++++|+++|+++++.+++
T Consensus 176 --------------------------~~~~~~~~~~~~~~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~g~~~~~~~~~ 227 (255)
T d1jjfa_ 176 --------------------------ERLFPDGGKAAREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQ 227 (255)
T ss_dssp --------------------------HHHCTTTTHHHHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCEEEEET
T ss_pred --------------------------ccccccHHHHhhccCCcceEEeCCCCCCch--HHHHHHHHHHHCCCCEEEEEEC
Confidence 000001112223344799999999999875 5678999999999999999999
Q ss_pred CCCccCC
Q 005093 688 NDVHGIE 694 (715)
Q Consensus 688 ~~~H~~~ 694 (715)
+++|.+.
T Consensus 228 ~ggH~~~ 234 (255)
T d1jjfa_ 228 GGGHDFN 234 (255)
T ss_dssp TCCSSHH
T ss_pred CCCcCHH
Confidence 9999763
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=6e-18 Score=166.25 Aligned_cols=204 Identities=14% Similarity=0.094 Sum_probs=138.1
Q ss_pred cccCCCC-ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCC-
Q 005093 456 NLTKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP- 533 (715)
Q Consensus 456 ~~~~~~g-~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~- 533 (715)
++.+.+| .++.+++++|.++++.+++|+|+++||+++..... .....+..+.+|+.|+++++++...++........
T Consensus 17 ~~~s~dg~~~~~~~v~~P~~~~~~~~yPvi~~lhG~~~~~~~~-~~~~~~~~~~~~~~vV~v~~~~~~~~~~~~r~~d~~ 95 (265)
T d2gzsa1 17 SFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLD-DELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYT 95 (265)
T ss_dssp EEECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHHHCC-HHHHHHHTTSCCCEEEEEEESSSSSCCHHHHHHHTC
T ss_pred EEEcCCCCEEEEEEEEcCCCCCCCCCceEEEEecCcchhhhHH-HHHHHHHHhcCCCeEEEecCCCCCcCcccccccccc
Confidence 3445555 57999999999998899999999999965322111 11223445789999999999987766543211100
Q ss_pred -------C---------CCCcc-chh--hHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCc
Q 005093 534 -------G---------KVGSQ-DVN--DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594 (715)
Q Consensus 534 -------~---------~~~~~-~~~--d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 594 (715)
. ..+.. ... ...+++.++.++..+|+++++|+|+|+||++++.++.+ ++.|.++++.+|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~-~~~f~~~~a~s~~ 174 (265)
T d2gzsa1 96 PAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRSYYSASPS 174 (265)
T ss_dssp CGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSEEEEESGG
T ss_pred cccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-CcccCEEEEECCc
Confidence 0 00000 011 11234455666666899999999999999999987775 6678888888875
Q ss_pred chhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCC--------CCcCCchH
Q 005093 595 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ--------DLRVPVSN 666 (715)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~--------D~~v~~~~ 666 (715)
..+ .....+...++.........|+++.+|+. |..+++.+
T Consensus 175 ~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~ 222 (265)
T d2gzsa1 175 LGR--------------------------------GYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSK 222 (265)
T ss_dssp GST--------------------------------THHHHHHHHHTSCTTTTTTCEEEEEECCC-----------CHHHH
T ss_pred ccc--------------------------------cchhhhhccccccccccCCCcEEEEcCCcccccccccccchhHHH
Confidence 421 11222233334444555667888888877 66678889
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 667 GLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 667 ~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
+.+++++|+++|+++++.+|||++|+.
T Consensus 223 ~~~l~~~L~~~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 223 IHTTLTILKDKGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCCHHH
T ss_pred HHHHHHHHHHCCCCEEEEEcCCCCcch
Confidence 999999999999999999999999974
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.71 E-value=1.6e-16 Score=164.46 Aligned_cols=253 Identities=12% Similarity=0.118 Sum_probs=157.8
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCC----CCCC------ccchHHHHHHHhCCcEEEEEcCCCCCCCchh
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH----SVSL------SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE 527 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~----~~~~------~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~ 527 (715)
+-.||++|.+.+|+|+ ..++.|+||+.|+.+. .... .......+.|+++||+|+.+|.||.++++..
T Consensus 34 pmrDG~~L~~~v~~P~---~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~ 110 (385)
T d2b9va2 34 PMRDGVKLYTVIVIPK---NARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGD 110 (385)
T ss_dssp ECTTSCEEEEEEEEET---TCCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCSC
T ss_pred ECCCCCEEEEEEEEcC---CCCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEEcCCcccCCCCc
Confidence 3458899999999998 4678999999886210 0000 0122345789999999999999998877766
Q ss_pred hhhcC-----CCCCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhcc
Q 005093 528 ALQSL-----PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 602 (715)
Q Consensus 528 ~~~~~-----~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~ 602 (715)
+.... ...+...+.+|..++|+|+.++..++..||+++|+|+||++++.+|+..|+.+++++..+++.+......
T Consensus 111 ~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~~~~~~d~~~~~~ 190 (385)
T d2b9va2 111 YVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGDD 190 (385)
T ss_dssp CCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEECCCTTTBSS
T ss_pred eeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEEeccccccccccc
Confidence 53221 2234445689999999999999767889999999999999999999988999999998888766432110
Q ss_pred CCCCC-------Ccee-eeccCCCCCCCCCCCCC-hh-------------------------------hHHHHHhcCchh
Q 005093 603 TTDIP-------DWCY-VESYGSKGKDSFTESPS-VE-------------------------------DLTRFHSKSPIS 642 (715)
Q Consensus 603 ~~~~~-------~~~~-~~~~~~~~~~~~~~~~~-~~-------------------------------~~~~~~~~sp~~ 642 (715)
..... .|.. ................. .. .-+.+...++..
T Consensus 191 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~w~~~s~~~ 270 (385)
T d2b9va2 191 WFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAYDAFWQGQALDK 270 (385)
T ss_dssp SEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSSSHHHHTTCHHH
T ss_pred ccCCchhccccHHHHHhhhhhcccCccccccchHHHHHHHHhccccccchhcccchhhhhhhhccCcccchhhhhcChhH
Confidence 00000 0000 00000000000000000 00 002223334433
Q ss_pred hc--cCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcC--CcEEEEEeCCCCccCC-C-----------CCc-hHHHHHH
Q 005093 643 HI--SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG--VETKVIVFPNDVHGIE-R-----------PQS-DFESFLN 705 (715)
Q Consensus 643 ~~--~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g--~~~~~~~~~~~~H~~~-~-----------~~~-~~~~~~~ 705 (715)
.+ .++.+|+|++.|..|... ...+...++.++..+ .+.++++-|. +|... . .+. .......
T Consensus 271 ~~~~~~i~vP~l~~~g~~dd~~-~~g~~~~~~~l~~~~~~~~~~LiiGPw-~H~~~~~~~~~~g~~~~~~~~~~~~~~~~ 348 (385)
T d2b9va2 271 ILAQRKPTVPMLWEQGLWDQED-MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFEGDTAHQYRRDV 348 (385)
T ss_dssp HHHHHCCCSCEEEEEETTCSSC-SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHHHHT
T ss_pred HHhhccccCceEEEEecccCCc-ccchHHHHHHHHhhccCCCcEEEEeCC-cCCCcccccccccccccCcccchhhHHHH
Confidence 33 356789999999887654 455667777777653 4678888876 45321 1 111 2223455
Q ss_pred HHHHHHHhcC
Q 005093 706 IGLWFKKYCK 715 (715)
Q Consensus 706 i~~wl~~~l~ 715 (715)
+++||++|||
T Consensus 349 ~l~WFD~~LK 358 (385)
T d2b9va2 349 FRPFFDEYLK 358 (385)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHcC
Confidence 7899999997
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.70 E-value=1.7e-17 Score=161.23 Aligned_cols=215 Identities=15% Similarity=0.082 Sum_probs=130.4
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCceEE
Q 005093 484 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 563 (715)
Q Consensus 484 vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~i~ 563 (715)
+|++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.... ......++..+.+..++... ...+++.
T Consensus 5 ~vliHG~~~~--~~~w~~~~~~L~~~g~~Via~Dl~G---~G~S~~~~----~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 74 (256)
T d3c70a1 5 FVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAA---SGVDPRQI----EEIGSFDEYSEPLLTFLEAL-PPGEKVI 74 (256)
T ss_dssp EEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTCSCCG----GGCCSHHHHTHHHHHHHHHS-CTTCCEE
T ss_pred EEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEcCCC---CCCCCCCC----CCCCCHHHHHHHhhhhhhhh-cccccee
Confidence 5889997654 5678889999999999999999999 55543211 11223555555554443332 2357899
Q ss_pred EEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc----------cCCCCCCceee--ec---------cCCCC-CC
Q 005093 564 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----------GTTDIPDWCYV--ES---------YGSKG-KD 621 (715)
Q Consensus 564 l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~----------~~~~~~~~~~~--~~---------~~~~~-~~ 621 (715)
|+|||+||.+++.++.++|++++++|++++........ ........... .. ..... ..
T Consensus 75 lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
T d3c70a1 75 LVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRE 154 (256)
T ss_dssp EEEETTHHHHHHHHHHHHGGGEEEEEEESCCCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHHHH
T ss_pred ecccchHHHHHHHHhhcCchhhhhhheeccccCCcccchhhHhhhhhhhhhhhhhhHHHhhhccccccchhhhhhhhhhh
Confidence 99999999999999999999999999888653211000 00000000000 00 00000 00
Q ss_pred CCCCCCChhh-HHHHH-------------hcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeC
Q 005093 622 SFTESPSVED-LTRFH-------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 687 (715)
Q Consensus 622 ~~~~~~~~~~-~~~~~-------------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (715)
.......... ..... ..........+++|+++++|++|..+|++....+.+.+ ...++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~----p~~~~~~i~ 230 (256)
T d3c70a1 155 NLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENY----KPDKVYKVE 230 (256)
T ss_dssp HTSTTSCHHHHHHHHHHCCCBCCCHHHHTTSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHS----CCSEEEECC
T ss_pred hhhhhcchhhHHHhhhhhhhhhHHHhhhhhcchhhhhhccccceeEEeecCCCCCCHHHHHHHHHHC----CCCEEEEEC
Confidence 0000000000 00000 11111223345689999999999999987766655443 457899999
Q ss_pred CCCccCCCCCchHHHHHHHHHHHHHh
Q 005093 688 NDVHGIERPQSDFESFLNIGLWFKKY 713 (715)
Q Consensus 688 ~~~H~~~~~~~~~~~~~~i~~wl~~~ 713 (715)
++||.....+ .+++.+.+.+++++|
T Consensus 231 ~agH~~~~e~-P~~~~~~l~~~~~~~ 255 (256)
T d3c70a1 231 GGDHKLQLTK-TKEIAEILQEVADTY 255 (256)
T ss_dssp SCCSCHHHHS-HHHHHHHHHHHHHHC
T ss_pred CCCCchHHhC-HHHHHHHHHHHHHhc
Confidence 9999766443 457888888888775
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.70 E-value=1.3e-16 Score=157.51 Aligned_cols=215 Identities=18% Similarity=0.251 Sum_probs=127.2
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
..|.||++||.+.+ ...|...+..|.++||.|+++|+|| +|.+... .....++++.+.+..+++. ++.
T Consensus 22 ~g~~illlHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~-----~~~~~~~~~~~di~~~i~~--l~~ 89 (279)
T d1hkha_ 22 SGQPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRG---FGGSSKV-----NTGYDYDTFAADLHTVLET--LDL 89 (279)
T ss_dssp SSEEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTT---STTSCCC-----SSCCSHHHHHHHHHHHHHH--HTC
T ss_pred cCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEechh---hCCcccc-----ccccchhhhhhhhhhhhhh--cCc
Confidence 35789999996654 5678888888889999999999999 5554311 1123455555555555554 245
Q ss_pred ceEEEEEeChhH-HHHHHHHhhCCCceeEEEecCCcchhhhhccCCCC--CCce------------------eeeccCCC
Q 005093 560 SKVTVVGGSHGG-FLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI--PDWC------------------YVESYGSK 618 (715)
Q Consensus 560 ~~i~l~G~S~GG-~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~--~~~~------------------~~~~~~~~ 618 (715)
+++.|+|||+|| .++..++..+|+++++++++++............. .... ....+..
T Consensus 90 ~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 168 (279)
T d1hkha_ 90 RDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYN- 168 (279)
T ss_dssp CSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHT-
T ss_pred CccccccccccccchhhhhccccccccceeEEeeccCCccccchhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcc-
Confidence 789999999996 56666777789999999988765322111000000 0000 0000000
Q ss_pred CCCCCCCCCChhhHHH----HHhc-----------------CchhhccCCCCcEEEEeeCCCCcCCchHH-HHHHHHHHH
Q 005093 619 GKDSFTESPSVEDLTR----FHSK-----------------SPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALRE 676 (715)
Q Consensus 619 ~~~~~~~~~~~~~~~~----~~~~-----------------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~~~~l~~ 676 (715)
................ .... +.+..+..+++|+|+++|++|..++.+.. ..+.+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~-- 246 (279)
T d1hkha_ 169 LDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAV-- 246 (279)
T ss_dssp HHHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHHC--
T ss_pred cchhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhcccccchhhhcccCCceEEEEcCCCCccCHHHHHHHHHHhC--
Confidence 0000000000000000 0000 01123455689999999999999987643 3333333
Q ss_pred cCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 677 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 677 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
..+++++++++||....+ ...++.+.|.+||++
T Consensus 247 --p~~~~~~i~~~gH~~~~e-~p~~v~~~i~~fl~k 279 (279)
T d1hkha_ 247 --PEADYVEVEGAPHGLLWT-HADEVNAALKTFLAK 279 (279)
T ss_dssp --TTSEEEEETTCCTTHHHH-THHHHHHHHHHHHHC
T ss_pred --CCCEEEEECCCCCchHHh-CHHHHHHHHHHHHCc
Confidence 347889999999976544 445788899999874
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.70 E-value=1e-16 Score=161.58 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=85.4
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
..+||.+++...+- +.+.|.||++||++.+. ..|... ..+...||.|+++|.|| +|.+.. +....
T Consensus 17 ~~~dg~~i~y~~~G------~~~g~pvvllHG~~g~~--~~~~~~-~~~l~~~~~Vi~~D~rG---~G~S~~---~~~~~ 81 (313)
T d1azwa_ 17 KVDDRHTLYFEQCG------NPHGKPVVMLHGGPGGG--CNDKMR-RFHDPAKYRIVLFDQRG---SGRSTP---HADLV 81 (313)
T ss_dssp ECSSSCEEEEEEEE------CTTSEEEEEECSTTTTC--CCGGGG-GGSCTTTEEEEEECCTT---STTSBS---TTCCT
T ss_pred EeCCCcEEEEEEec------CCCCCEEEEECCCCCCc--cchHHH-hHHhhcCCEEEEEeccc---cCCCCc---ccccc
Confidence 34567777755552 22457789999977543 233322 23346899999999999 666542 11222
Q ss_pred ccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 538 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 538 ~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
...++++.+.+..++++- ..+++.|+|||+||.+++.+|.++|++++++++.++..
T Consensus 82 ~~~~~~~~~dl~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 137 (313)
T d1azwa_ 82 DNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp TCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred chhHHHHHHHHHHHHHhh--ccccceeEEecCCcHHHHHHHHHhhhceeeeeEecccc
Confidence 334667777777777763 45789999999999999999999999999999888754
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.1e-15 Score=161.79 Aligned_cols=297 Identities=11% Similarity=0.031 Sum_probs=180.2
Q ss_pred EEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCC-----CCCeEEEEe-cCCccEEEEecCccc
Q 005093 16 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTV 89 (715)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~ 89 (715)
..|+++++.++.. ...++...+.. -.+....+||||++|+|..+..+ ....++..+ .++...++.......
T Consensus 37 g~i~~~~~~~~~~-~~l~~~~~~~~--~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~ 113 (465)
T d1xfda1 37 GTVRLWNVETNTS-TVLIEGKKIES--LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN 113 (465)
T ss_dssp SCEEEBCGGGCCC-EEEECTTTTTT--TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred CcEEEEECCCCCE-EEEEcCccccc--cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc
Confidence 3688877776653 22334444332 34677899999999999876432 234566666 666766664332211
Q ss_pred cccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEc
Q 005093 90 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 169 (715)
Q Consensus 90 ~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 169 (715)
+.+..+.|||||++|||+. ..+||+.+.
T Consensus 114 -------~~l~~~~wSPDG~~iafv~---------------------------------------------~~nl~~~~~ 141 (465)
T d1xfda1 114 -------AKLQYAGWGPKGQQLIFIF---------------------------------------------ENNIYYCAH 141 (465)
T ss_dssp -------CCCSBCCBCSSTTCEEEEE---------------------------------------------TTEEEEESS
T ss_pred -------cccceeeeccCCceEEEEe---------------------------------------------cceEEEEec
Confidence 1226799999999999973 267999999
Q ss_pred cCCceEeecCCCCCC------------------ccceEEEecCCCCCccEEEEEeecCccce---------------eee
Q 005093 170 NSGEVQAVKGIPKSL------------------SVGQVVWAPLNEGLHQYLVFVGWSSETRK---------------LGI 216 (715)
Q Consensus 170 ~~g~~~~l~~~~~~~------------------~~~~~~~spdg~~~~~~i~~~~~~~~~~~---------------~g~ 216 (715)
.+++..+++ ..+.. ....+.|||||++ |+|.......-. ...
T Consensus 142 ~~~~~~~lt-~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~----iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~ 216 (465)
T d1xfda1 142 VGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR----LAYAAINDSRVPIMELPTYTGSIYPTVKPY 216 (465)
T ss_dssp SSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE----EEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred CCCceEEEe-cccCcceeeccccchhhhhhhccccceEEECCCCCe----EEEEEecccccceeecccccccccceeeee
Confidence 888877775 21110 1235679999999 999763222000 001
Q ss_pred eee----ecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCC-------CccccceeEcCCCCeEEEEecCCCCC
Q 005093 217 KYC----YNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVD 285 (715)
Q Consensus 217 ~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-------~~~~~~~~~spdg~~l~~~~~~~~~~ 285 (715)
.+. .+....|+++|+ +++........ ......+.|+||++.+++..++.
T Consensus 217 ~Yp~~G~~np~~~l~v~d~-----------------~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~--- 276 (465)
T d1xfda1 217 HYPKAGSENPSISLHVIGL-----------------NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA--- 276 (465)
T ss_dssp ECCBTTSCCCEEEEEEEES-----------------SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT---
T ss_pred eccccCCCCCceeEEEEec-----------------CCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccc---
Confidence 110 112235788886 55544333221 11246689999998666666664
Q ss_pred CCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccC-CCCCCccccCCCEEEEEe--eeCCeeEEEEE
Q 005093 286 SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSNPWLSDGCTMLLSS--IWGSSQVIISV 362 (715)
Q Consensus 286 ~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~dg~~l~~~~--~~~~~~~l~~~ 362 (715)
.....|+++|..+++.+.+.....+ .|-. ....+.|++||+.++|.. ...+..++|.+
T Consensus 277 ----q~~~~i~~~d~~tg~~~~~~~e~~~---------------~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~ 337 (465)
T d1xfda1 277 ----QNVSILTLCDATTGVCTKKHEDESE---------------AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI 337 (465)
T ss_dssp ----SCEEEEEEEETTTCCEEEEEEEECS---------------SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred ----cccceEEEEcCCCCcEEEEEEEcCC---------------ceEeccCCceeEccCCCeeEEEEeeeecccCceEEE
Confidence 3455799999988776544322110 1211 224678999999876643 34566778777
Q ss_pred EC-------CCCcEEEecCCCCCce-eEEEeecCCEEEEEEeCCCCCC--eEEEEeeccc
Q 005093 363 NV-------SSGELLRITPAESNFS-WSLLTLDGDNIIAVSSSPVDVP--QVKYGYFVDK 412 (715)
Q Consensus 363 d~-------~tg~~~~l~~~~~~~~-~~~~s~~~~~l~~~~~~~~~p~--~l~~~~~~~~ 412 (715)
.+ .++..++|+.+.-.+. ...++.+++.|+|++.. ..|. .||++++.+.
T Consensus 338 ~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~-~~p~~~hly~v~l~g~ 396 (465)
T d1xfda1 338 TVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE-DLPRRRQLYSANTVGN 396 (465)
T ss_dssp EEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS-SCTTCCEEEEECSSTT
T ss_pred EeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC-CCCCceEEEEEECCCC
Confidence 54 3455677887655332 23577788999998753 3444 4777776543
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.69 E-value=1e-17 Score=162.36 Aligned_cols=214 Identities=11% Similarity=0.017 Sum_probs=135.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCc----EEEEEcCCCCCCCchhhhhcCCCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY----SLLIVNYRGSLGFGEEALQSLPGKV 536 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~----~vi~~d~rG~~~~g~~~~~~~~~~~ 536 (715)
.|..++.++|.|.+++ .+++|+||++||+++.... .....+..+.++|. .++.++... +........ .
T Consensus 25 lg~~~~~~v~~P~~~~-~~~~Pvvv~lhG~~~~~~~-~~~~~l~~l~~~~~~~~~i~v~~~~~~----~~~~~~~~~--~ 96 (246)
T d3c8da2 25 LKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSM-PVWPVLTSLTHRQQLPPAVYVLIDAID----TTHRAHELP--C 96 (246)
T ss_dssp TTEEEEEEEEEC------CCCCEEEESSHHHHHHTS-CCHHHHHHHHHTTSSCSCEEEEECCCS----HHHHHHHSS--S
T ss_pred CCCEEEEEEEECCCCC-CCCCCEEEEeCCcchhccC-cHHHHHHHHHHhCCCCceEEeeccccc----ccccccccC--c
Confidence 4778899999999874 4679999999996543322 23345566666653 344444322 111111111 1
Q ss_pred CccchhhHH-HHHHHHHHc--CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeee
Q 005093 537 GSQDVNDVL-TAIDHVIDM--GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 613 (715)
Q Consensus 537 ~~~~~~d~~-~~i~~l~~~--~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 613 (715)
...-...+. +++.++.+. ..+|+++++|+|+|+||++++.++.++|++|+++++++|..++....
T Consensus 97 ~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~~~~~~~~------------ 164 (246)
T d3c8da2 97 NADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG------------ 164 (246)
T ss_dssp CHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTT------------
T ss_pred cHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCcccccccCC------------
Confidence 111111222 222333332 33688999999999999999999999999999999999976532110
Q ss_pred ccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccC
Q 005093 614 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 693 (715)
. .....+....+.....+...|+++.+|..|..+ ..++++++++|+++|.++++.+++| ||.+
T Consensus 165 ---~------------~~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~~~l~~~L~~~g~~~~~~~~~G-gH~~ 227 (246)
T d3c8da2 165 ---G------------QQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG-GHDA 227 (246)
T ss_dssp ---S------------SSCCHHHHHHHTTSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC-CSCH
T ss_pred ---c------------cchHHHHHHhhhhhhhccCCCeEEEecCCCcch-hHHHHHHHHHHHHCCCCEEEEEeCC-CCCh
Confidence 0 011122223344556677789999999999876 4778899999999999999999997 7976
Q ss_pred CCCCchHHHHHHHHHHHHHhc
Q 005093 694 ERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 694 ~~~~~~~~~~~~i~~wl~~~l 714 (715)
.. ....+.+.+.||-+.|
T Consensus 228 ~~---W~~~l~~~l~~l~~~~ 245 (246)
T d3c8da2 228 LC---WRGGLMQGLIDLWQPL 245 (246)
T ss_dssp HH---HHHHHHHHHHHHHGGG
T ss_pred HH---HHHHHHHHHHHHHHhh
Confidence 42 2345556666665443
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=5.1e-17 Score=161.52 Aligned_cols=242 Identities=15% Similarity=0.111 Sum_probs=152.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC-C
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK-V 536 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~-~ 536 (715)
.|.++...++.| .+++|+|+++||++.......|.. ..+.+++.|+.|++++..+...++.......... .
T Consensus 19 ~~r~~~~~v~~p-----~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 93 (288)
T d1sfra_ 19 MGRDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGC 93 (288)
T ss_dssp TTEEEEEEEECC-----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTCBCSSCEEETTEE
T ss_pred CCcEEEEEEeCC-----CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCCCCccccCcccccccc
Confidence 567777666655 468999999999665433334432 4567889999999999876544333221110000 0
Q ss_pred --CccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeec
Q 005093 537 --GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 614 (715)
Q Consensus 537 --~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (715)
......-+.+.+.++.++..+|+++++|+|+|+||++|+.+++++|++|+++++++|.++.......... ......
T Consensus 94 ~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~~~~~~~~--~~~~~~ 171 (288)
T d1sfra_ 94 QTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLI--GLAMGD 171 (288)
T ss_dssp ECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTTHHHHH--HHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCcccccccccchhh--hhhhhh
Confidence 0111223456778888887899999999999999999999999999999999999998764321100000 000000
Q ss_pred cCCCCCCCCCCCCChhhHHHHHhcCchhhccC---CCCcEEEEeeCCCCcCCc--------------hHHHHHHHHHHHc
Q 005093 615 YGSKGKDSFTESPSVEDLTRFHSKSPISHISK---VKTPTIFLLGAQDLRVPV--------------SNGLQYARALREK 677 (715)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---i~~P~Lii~G~~D~~v~~--------------~~~~~~~~~l~~~ 677 (715)
........+.+.. ....+...+|...+.+ -.+++++.+|..|..++. .+++++.++|+++
T Consensus 172 ~~~~~~~~~~g~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~~~~~~l~~~l~~~ 248 (288)
T d1sfra_ 172 AGGYKASDMWGPK---EDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAG 248 (288)
T ss_dssp TTSCCHHHHHCST---TSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHhhhcCCc---chhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHC
Confidence 0000000000001 1123445566555433 246899999999987663 4677899999999
Q ss_pred CCcEEEEEeCCC-CccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 678 GVETKVIVFPND-VHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 678 g~~~~~~~~~~~-~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
|+++.+..+++. +|.+.. ....+.+.+.|+.+.|+
T Consensus 249 g~~~~~~~~~~~G~H~w~~---w~~~l~~~l~~l~~alg 284 (288)
T d1sfra_ 249 GGHNGVFDFPDSGTHSWEY---WGAQLNAMKPDLQRALG 284 (288)
T ss_dssp TCCSEEEECCSCCCSSHHH---HHHHHHHTHHHHHHHHT
T ss_pred CCCeEEEEECCCCccChhH---HHHHHHHHHHHHHHhcC
Confidence 999999888865 597642 22445567777777653
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.69 E-value=3.2e-16 Score=155.75 Aligned_cols=228 Identities=17% Similarity=0.225 Sum_probs=133.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
+|.+++.... +..|.||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+.... ........
T Consensus 16 ~~~~l~y~~~--------G~gp~vv~lHG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G---~G~s~~~~-~~~~~~~~ 80 (293)
T d1ehya_ 16 PDVKIHYVRE--------GAGPTLLLLHGWPGF--WWEWSKVIGPLAE-HYDVIVPDLRG---FGDSEKPD-LNDLSKYS 80 (293)
T ss_dssp SSCEEEEEEE--------ECSSEEEEECCSSCC--GGGGHHHHHHHHT-TSEEEEECCTT---STTSCCCC-TTCGGGGC
T ss_pred CCEEEEEEEE--------CCCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCc---ccCCcccc-cccccccc
Confidence 5667764321 235789999996654 5678888888855 89999999999 55443211 11122234
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc--cCCCC-CCcee------
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--GTTDI-PDWCY------ 611 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~--~~~~~-~~~~~------ 611 (715)
.+++.+.+..+++. .+.+++.++||||||.+++.++.++|+++.++++++|........ ..... ..+..
T Consensus 81 ~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (293)
T d1ehya_ 81 LDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGHVHESWYSQFHQLD 158 (293)
T ss_dssp HHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-----------CCHHHHHTTCH
T ss_pred chhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeeccCccccchhhhhhhhhhhhhhhhhccc
Confidence 56666666666665 345789999999999999999999999999999998754211000 00000 00000
Q ss_pred ----------------eeccCCCCCCCCCCCCChhhHHH-----------------HHh-cCc------hhhccCCCCcE
Q 005093 612 ----------------VESYGSKGKDSFTESPSVEDLTR-----------------FHS-KSP------ISHISKVKTPT 651 (715)
Q Consensus 612 ----------------~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~sp------~~~~~~i~~P~ 651 (715)
...+... ............... +.. ..+ ......+++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv 237 (293)
T d1ehya_ 159 MAVEVVGSSREVCKKYFKHFFDH-WSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHTMSDLPV 237 (293)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH-TSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCCCTGGGSCBCSCE
T ss_pred hhhhhhccchhHHHHHHHHhhhh-cccccccccHHHHHhhhhccccchhhhhhhhhhhhccccchhhhhhhhhhccCCce
Confidence 0000000 000000000011000 000 000 01123467899
Q ss_pred EEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHH
Q 005093 652 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 710 (715)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 710 (715)
|+++|++|..+|.....+..+.+ ..++++++++++||....++ .+.+.+.|.+||
T Consensus 238 lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~e~-Pe~~~~~I~~Ff 292 (293)
T d1ehya_ 238 TMIWGLGDTCVPYAPLIEFVPKY---YSNYTMETIEDCGHFLMVEK-PEIAIDRIKTAF 292 (293)
T ss_dssp EEEEECCSSCCTTHHHHHHHHHH---BSSEEEEEETTCCSCHHHHC-HHHHHHHHHHHC
T ss_pred EEEEeCCCCCcCHHHHHHHHHHh---CCCCEEEEECCCCCchHHHC-HHHHHHHHHHhh
Confidence 99999999999987665554433 34689999999999765333 345666666665
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.2e-17 Score=162.88 Aligned_cols=209 Identities=17% Similarity=0.167 Sum_probs=127.4
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCc
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 560 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~ 560 (715)
.|.||++||.+.. ...|...+..|+ ++|.|+++|+|| +|.+. ......+.|+. +.+... ..+
T Consensus 11 ~~~lvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~D~~G---~G~S~------~~~~~~~~d~~---~~~~~~---~~~ 72 (256)
T d1m33a_ 11 NVHLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPG---FGRSR------GFGALSLADMA---EAVLQQ---APD 72 (256)
T ss_dssp SSEEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTT---STTCC------SCCCCCHHHHH---HHHHTT---SCS
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHh-CCCEEEEEeCCC---CCCcc------ccccccccccc---cccccc---ccc
Confidence 4668899996654 556777888885 689999999999 66542 12222344443 333333 247
Q ss_pred eEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCce---eeecc--------CCCCCCCCCCCCC-
Q 005093 561 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC---YVESY--------GSKGKDSFTESPS- 628 (715)
Q Consensus 561 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~~~~~- 628 (715)
++.++|||+||.+++.+|.++|+++++++++++................. +...+ .............
T Consensus 73 ~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
T d1m33a_ 73 KAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETA 152 (256)
T ss_dssp SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTH
T ss_pred ceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhccccch
Confidence 89999999999999999999999999988877543211000000000000 00000 0000000000000
Q ss_pred ------------------hh----hHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEe
Q 005093 629 ------------------VE----DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 686 (715)
Q Consensus 629 ------------------~~----~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (715)
.. ....+...+....+.++++|+|+++|++|.++|++.+..+.+.+ ..++++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~~~l~~~~----~~~~~~~i 228 (256)
T d1m33a_ 153 RQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLW----PHSESYIF 228 (256)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTC----TTCEEEEE
T ss_pred hhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCCccccccccCCCCCHHHHHHHHHHC----CCCEEEEE
Confidence 00 01111223334556788999999999999999988766654443 35789999
Q ss_pred CCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 687 PNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 687 ~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
+++||.... +..+++.+.|.+|+++
T Consensus 229 ~~~gH~~~~-e~p~~~~~~l~~fl~~ 253 (256)
T d1m33a_ 229 AKAAHAPFI-SHPAEFCHLLVALKQR 253 (256)
T ss_dssp TTCCSCHHH-HSHHHHHHHHHHHHTT
T ss_pred CCCCCchHH-HCHHHHHHHHHHHHHH
Confidence 999997553 3456888899999875
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.67 E-value=9.4e-16 Score=145.20 Aligned_cols=191 Identities=16% Similarity=0.183 Sum_probs=123.1
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhC--CcEEEEEcCCCC-----CCC-chhhhhcCCCC-CCccchhhH---HH
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGS-----LGF-GEEALQSLPGK-VGSQDVNDV---LT 546 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~--G~~vi~~d~rG~-----~~~-g~~~~~~~~~~-~~~~~~~d~---~~ 546 (715)
+..++||++||.+.+ ...+....+.+.+. ++.+++++-+.. +++ +..|....... ......+++ ..
T Consensus 12 ~~~~~Vi~lHG~G~~--~~~~~~~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 89 (218)
T d1auoa_ 12 PADACVIWLHGLGAD--RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAK 89 (218)
T ss_dssp CCSEEEEEECCTTCC--TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCC--hhhHHHHHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHHH
Confidence 456799999995544 34566667777554 456666553210 001 11121111111 111122233 23
Q ss_pred HHHHHHH---cCCCCCceEEEEEeChhHHHHHHHHhh-CCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCC
Q 005093 547 AIDHVID---MGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 622 (715)
Q Consensus 547 ~i~~l~~---~~~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (715)
.+..+++ ...+|.++++++|+|+||.+++.++.. .+..+++++++++..... ..
T Consensus 90 ~v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~-----------------~~----- 147 (218)
T d1auoa_ 90 MVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF-----------------GD----- 147 (218)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC-----------------CT-----
T ss_pred HHHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccc-----------------cc-----
Confidence 3333322 345899999999999999999887654 466799999888753210 00
Q ss_pred CCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHH
Q 005093 623 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFES 702 (715)
Q Consensus 623 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 702 (715)
..... . ...++|+|++||++|.+||.+.+.++++.|++.|.+++++.|+ ++|.+. .+.
T Consensus 148 ---~~~~~--~-----------~~~~~pvl~~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~-~gH~i~-----~~~ 205 (218)
T d1auoa_ 148 ---ELELS--A-----------SQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQE 205 (218)
T ss_dssp ---TCCCC--H-----------HHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHH
T ss_pred ---ccccc--h-----------hccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCCEEEEEEC-CCCccC-----HHH
Confidence 00000 0 1124799999999999999999999999999999999999997 689775 356
Q ss_pred HHHHHHHHHHhcC
Q 005093 703 FLNIGLWFKKYCK 715 (715)
Q Consensus 703 ~~~i~~wl~~~l~ 715 (715)
+..+.+||.+.|+
T Consensus 206 ~~~i~~wl~~~lg 218 (218)
T d1auoa_ 206 IHDIGAWLAARLG 218 (218)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 8899999999875
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.65 E-value=6.9e-15 Score=157.05 Aligned_cols=303 Identities=13% Similarity=0.067 Sum_probs=178.6
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCC-----CCCeEEEEe-cCCccEEEEecCcccc
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVH 90 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~ 90 (715)
.|+++|+.++.. ...+....|......+..++|||||++|||..+..+ ....+++.+ .+++..+++..+...
T Consensus 37 ~~~~~~~~t~~~-~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~- 114 (470)
T d2bgra1 37 NILVFNAEYGNS-SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNT- 114 (470)
T ss_dssp CEEEEETTTCCE-EEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTE-
T ss_pred cEEEEECCCCCE-EEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccc-
Confidence 477777776653 222334444444456889999999999999875321 123455555 566555444433333
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
..++|||||++|||+. ..+||++++.
T Consensus 115 ---------~~~~~SPDG~~ia~~~---------------------------------------------~~~l~~~~~~ 140 (470)
T d2bgra1 115 ---------QWVTWSPVGHKLAYVW---------------------------------------------NNDIYVKIEP 140 (470)
T ss_dssp ---------EEEEECSSTTCEEEEE---------------------------------------------TTEEEEESST
T ss_pred ---------cccccccCcceeeEee---------------------------------------------cccceEEECC
Confidence 6899999999999963 2568999999
Q ss_pred CCceEeecCCCC-----------------CCccceEEEecCCCCCccEEEEEeecCccce-----------------eee
Q 005093 171 SGEVQAVKGIPK-----------------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-----------------LGI 216 (715)
Q Consensus 171 ~g~~~~l~~~~~-----------------~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~-----------------~g~ 216 (715)
+|+..+++.... ......+.|||||+. |+|.......-+ ...
T Consensus 141 ~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~----ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (470)
T d2bgra1 141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF----LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (470)
T ss_dssp TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE----EEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred CCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCc----cceeEecCCcCceEEEEeeccCCCCCCeeeee
Confidence 888777741100 011235779999999 999764222100 000
Q ss_pred ee----eecCCceEEEEecccccchhhhhhhhccCCCCCCceec------------CCCCccccceeEcCCCCeEEEEec
Q 005093 217 KY----CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL------------TESISSAFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 217 ~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------t~~~~~~~~~~~spdg~~l~~~~~ 280 (715)
.+ ..+....++++++ .++....+ .........+.|+++++.+++..+
T Consensus 217 ~~~~~g~~~~~~~~~v~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 279 (470)
T d2bgra1 217 PYPKAGAVNPTVKFFVVNT-----------------DSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR 279 (470)
T ss_dssp ECCBTTSCCCEEEEEEEEG-----------------GGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE
T ss_pred ccccccccCCcceEEEEEC-----------------CCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEee
Confidence 00 0111224566665 33332221 112223567899999987766665
Q ss_pred CCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccC--CCCCCccccCCCE-EEEEeeeCCee
Q 005093 281 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS--SILSNPWLSDGCT-MLLSSIWGSSQ 357 (715)
Q Consensus 281 ~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~dg~~-l~~~~~~~~~~ 357 (715)
+.. ......++.+|..++....+......... ...|.. ....+.|+++++. +++.+...+..
T Consensus 280 r~~-----~~~~~~~~~~d~~tg~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 344 (470)
T d2bgra1 280 RIQ-----NYSVMDICDYDESSGRWNCLVARQHIEMS----------TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR 344 (470)
T ss_dssp SST-----TEEEEEEEEEETTTTEEEECGGGCEEEEC----------SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCE
T ss_pred ccC-----CceEEEEEEecCCCCcEEEEEEEeeeeee----------ccceeecccCCCceeeecCCCcEEEEeccCcCc
Confidence 542 12234567777766655444322211000 000111 1234456666554 55666777889
Q ss_pred EEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCC-CCC--eEEEEeeccc
Q 005093 358 VIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV-DVP--QVKYGYFVDK 412 (715)
Q Consensus 358 ~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~-~p~--~l~~~~~~~~ 412 (715)
+||.++.+++..++++.+...+. ..++.+++.++|++.... .|. .||++++..+
T Consensus 345 ~ly~~~~~g~~~~~lt~g~~~v~-~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~ 401 (470)
T d2bgra1 345 HICYFQIDKKDCTFITKGTWEVI-GIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDY 401 (470)
T ss_dssp EEEEEETTCSCCEESCCSSSCEE-EEEEECSSEEEEEESCGGGCTTCBEEEEEETTCT
T ss_pred eeEEEeccCCceeeeccCCeeEE-EEEEECCCEEEEEEecCCCCcceEEEEEEECCCC
Confidence 99999999999999988765443 346778889998876543 344 4888887643
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.64 E-value=4.5e-15 Score=151.84 Aligned_cols=178 Identities=11% Similarity=0.036 Sum_probs=124.7
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGS 92 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 92 (715)
....++++|+.++ ...+++ . .+.+..++|||||++|++...++ + ..++..+ .+++.+++......+
T Consensus 22 ~~g~v~v~d~~~~--~~~~~~-~-----~~~v~~~~~spDg~~l~~~~~~~-g-~~v~v~d~~~~~~~~~~~~~~~v--- 88 (360)
T d1k32a3 22 SRGQAFIQDVSGT--YVLKVP-E-----PLRIRYVRRGGDTKVAFIHGTRE-G-DFLGIYDYRTGKAEKFEENLGNV--- 88 (360)
T ss_dssp ETTEEEEECTTSS--BEEECS-C-----CSCEEEEEECSSSEEEEEEEETT-E-EEEEEEETTTCCEEECCCCCCSE---
T ss_pred ECCeEEEEECCCC--cEEEcc-C-----CCCEEEEEECCCCCEEEEEEcCC-C-CEEEEEECCCCcEEEeeCCCceE---
Confidence 3457888766543 344442 2 26789999999999999987754 1 2344333 566665554433333
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 172 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 172 (715)
..++|||||++|++... ...+++|+++++
T Consensus 89 -------~~~~~spdg~~l~~~~~--------------------------------------------~~~~~~~~~~~~ 117 (360)
T d1k32a3 89 -------FAMGVDRNGKFAVVAND--------------------------------------------RFEIMTVDLETG 117 (360)
T ss_dssp -------EEEEECTTSSEEEEEET--------------------------------------------TSEEEEEETTTC
T ss_pred -------Eeeeecccccccceecc--------------------------------------------cccccccccccc
Confidence 68999999999998633 267999999998
Q ss_pred ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 173 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
+...+. .........++|||||+. |+|.......... ......++++++ .+++
T Consensus 118 ~~~~~~-~~~~~~~~~~~~spdg~~----la~~~~~~~~~~~-----~~~~~~~~v~d~-----------------~~~~ 170 (360)
T d1k32a3 118 KPTVIE-RSREAMITDFTISDNSRF----IAYGFPLKHGETD-----GYVMQAIHVYDM-----------------EGRK 170 (360)
T ss_dssp CEEEEE-ECSSSCCCCEEECTTSCE----EEEEEEECSSTTC-----SCCEEEEEEEET-----------------TTTE
T ss_pred ceeeee-ecccccccchhhccceee----eeeecccccccee-----eccccceeeecc-----------------ccCc
Confidence 876653 233445678999999999 9987643321111 112346888887 7788
Q ss_pred ceecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 253 VVNLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 253 ~~~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
...++........+.|||||++|++.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~spdg~~l~~~s~~~ 200 (360)
T d1k32a3 171 IFAATTENSHDYAPAFDADSKNLYYLSYRS 200 (360)
T ss_dssp EEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred eeeecccccccccccccCCCCEEEEEeCCC
Confidence 888888877888899999999999998764
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.63 E-value=6.9e-16 Score=154.30 Aligned_cols=231 Identities=15% Similarity=0.172 Sum_probs=136.6
Q ss_pred CCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 459 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 459 ~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
.+||.+|+...+-++ ..|.||++||++.+ ...|......| .+||.|+++|+|| +|.+... .....
T Consensus 18 ~~dG~~i~y~~~G~~------~g~pvvllHG~~~~--~~~w~~~~~~l-~~~~~vi~~D~rG---~G~S~~~---~~~~~ 82 (313)
T d1wm1a_ 18 TGDGHRIYWELSGNP------NGKPAVFIHGGPGG--GISPHHRQLFD-PERYKVLLFDQRG---CGRSRPH---ASLDN 82 (313)
T ss_dssp CSSSCEEEEEEEECT------TSEEEEEECCTTTC--CCCGGGGGGSC-TTTEEEEEECCTT---STTCBST---TCCTT
T ss_pred eCCCcEEEEEEecCC------CCCeEEEECCCCCc--ccchHHHHHHh-hcCCEEEEEeCCC---ccccccc---ccccc
Confidence 457888876655332 34678999997665 34555555444 5699999999999 5555321 11222
Q ss_pred cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhc-----------------
Q 005093 539 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----------------- 601 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~----------------- 601 (715)
....+..+.+..+.+. ....++.++|||+||.++..++..+|++++.+++.++........
T Consensus 83 ~~~~~~~~d~~~~~~~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (313)
T d1wm1a_ 83 NTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQDGASRFFPEKWE 160 (313)
T ss_dssp CSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTSSGGGTSHHHHH
T ss_pred cchhhHHHHHHhhhhc--cCCCcceeEeeecCCchhhHHHHHHhhhheeeeecccccccccccccccccccchhhhhhhh
Confidence 2345555555555555 345789999999999999999999999999999887654311000
Q ss_pred ---cCCCCCCcee------eeccCC----------------CCCCCCCCCCC------hhhHHH-------HHhc----C
Q 005093 602 ---GTTDIPDWCY------VESYGS----------------KGKDSFTESPS------VEDLTR-------FHSK----S 639 (715)
Q Consensus 602 ---~~~~~~~~~~------~~~~~~----------------~~~~~~~~~~~------~~~~~~-------~~~~----s 639 (715)
.......... ...... ........... ...... .... .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (313)
T d1wm1a_ 161 RVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAFARIENHYFTHLGFLE 240 (313)
T ss_dssp HHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHHHHHHHHHHHTGGGCS
T ss_pred hhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhHHhhhhhhhhhhhhhhcccc
Confidence 0000000000 000000 00000000000 000000 0000 0
Q ss_pred -----chhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 640 -----PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 640 -----p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
.......+++|+|+++|++|.++|++.++.+.+.+. .+++++++++||.+.. .+...++++.++++.
T Consensus 241 ~~~~~~~~~~~~~~~Pvlii~G~~D~~~p~~~~~~l~~~~p----~a~~~~i~~aGH~~~e----P~~~~~lv~a~~~f~ 312 (313)
T d1wm1a_ 241 SDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWP----EAELHIVEGAGHSYDE----PGILHQLMIATDRFA 312 (313)
T ss_dssp STTHHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHCT----TSEEEEETTCCSSTTS----HHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhCCCCEEEEEECCCCccCHHHHHHHHHHCC----CCEEEEECCCCCCcCC----chHHHHHHHHHHHhc
Confidence 011234577999999999999999988888777664 3789999999996532 356677888887764
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.61 E-value=6.8e-15 Score=142.73 Aligned_cols=213 Identities=15% Similarity=0.156 Sum_probs=121.1
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
+....|+||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+.... . ........+...+.....
T Consensus 12 ~~~~~P~ivllHG~~~~--~~~~~~~~~~L~~~g~~vi~~Dl~G---~G~s~~~~---~---~~~~~~~~~~~~~~~~~~ 80 (264)
T d1r3da_ 12 PTARTPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPG---HGTNPERH---C---DNFAEAVEMIEQTVQAHV 80 (264)
T ss_dssp CBTTBCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTT---CSSCC-------------CHHHHHHHHHHHTTC
T ss_pred CCCCCCeEEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEeccc---cccccccc---c---cccchhhhhhhhcccccc
Confidence 34567899999996654 5678899999999999999999999 55443211 1 111122222222223333
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhh----------------cc-CCCCCCceeeeccCCCC
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM----------------VG-TTDIPDWCYVESYGSKG 619 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~ 619 (715)
....++.++|||+||.+++.++.++|+.+.+++...+....... .. ..............
T Consensus 81 ~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 157 (264)
T d1r3da_ 81 TSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWY--- 157 (264)
T ss_dssp CTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHT---
T ss_pred cccCceeeeeecchHHHHHHHHHhCchhccccccccccCCCccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---
Confidence 45679999999999999999999999887776654332110000 00 00000000000000
Q ss_pred CCCCCCCCChhhHHH----------------HHh------cCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHc
Q 005093 620 KDSFTESPSVEDLTR----------------FHS------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 677 (715)
Q Consensus 620 ~~~~~~~~~~~~~~~----------------~~~------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (715)
............... ... ......+..+++|+++++|++|..+ ..+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~l~i~G~~D~~~-----~~~~~~---- 228 (264)
T d1r3da_ 158 QQAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKF-----QQLAES---- 228 (264)
T ss_dssp TSGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHH-----HHHHHH----
T ss_pred hhhhhcccchHHHHHHHHHHhhhhhhhhHHhhhhccccccccchhhhhccCcceEEEEeCCcHHH-----HHHHhc----
Confidence 000000000000000 000 0112345678899999999999643 122221
Q ss_pred CCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 678 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 678 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
..+++++++++||....+ ..+++.+.|.+||+..+
T Consensus 229 -~~~~~~~i~~~gH~~~~e-~P~~~~~~i~~fl~~l~ 263 (264)
T d1r3da_ 229 -SGLSYSQVAQAGHNVHHE-QPQAFAKIVQAMIHSII 263 (264)
T ss_dssp -HCSEEEEETTCCSCHHHH-CHHHHHHHHHHHHHHHC
T ss_pred -CCCeEEEECCCCCchHHH-CHHHHHHHHHHHHHhcc
Confidence 246788999999986644 34578889999998753
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.56 E-value=1.2e-14 Score=143.95 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=81.3
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
.+-+|.+++.... ++.|.||++||.+.+ ...|...+..|+ .+|.|+++|+|| +|.+.........
T Consensus 13 i~~~g~~i~y~~~--------G~g~~vvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~Dl~G---~G~S~~~~~~~~~- 77 (298)
T d1mj5a_ 13 IEIKGRRMAYIDE--------GTGDPILFQHGNPTS--SYLWRNIMPHCA-GLGRLIACDLIG---MGDSDKLDPSGPE- 77 (298)
T ss_dssp EEETTEEEEEEEE--------SCSSEEEEECCTTCC--GGGGTTTGGGGT-TSSEEEEECCTT---STTSCCCSSCSTT-
T ss_pred EEECCEEEEEEEE--------cCCCcEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEEeCCC---CCCCCCCcccccc-
Confidence 3347778874322 234789999997654 556777777775 569999999999 5554322111111
Q ss_pred ccchhhHHHHHHH-HHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 538 SQDVNDVLTAIDH-VIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 538 ~~~~~d~~~~i~~-l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
.....+..+.+.. +.+. ...+++.++|||+||.+++.++.++|++++++++.++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~ 134 (298)
T d1mj5a_ 78 RYAYAEHRDYLDALWEAL--DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 134 (298)
T ss_dssp SSCHHHHHHHHHHHHHHT--TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECC
T ss_pred ccccchhhhhhccccccc--cccccCeEEEecccchhHHHHHHHHHhhhheeecccccc
Confidence 1223344444333 3333 245789999999999999999999999999998876543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.56 E-value=4.5e-14 Score=144.20 Aligned_cols=168 Identities=14% Similarity=0.072 Sum_probs=128.0
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
.+||+||++++..+++. ....+..++|||||+. |++.+...+ ..|+++|+
T Consensus 24 g~v~v~d~~~~~~~~~~---~~~~v~~~~~spDg~~----l~~~~~~~g-------------~~v~v~d~---------- 73 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKVP---EPLRIRYVRRGGDTKV----AFIHGTREG-------------DFLGIYDY---------- 73 (360)
T ss_dssp TEEEEECTTSSBEEECS---CCSCEEEEEECSSSEE----EEEEEETTE-------------EEEEEEET----------
T ss_pred CeEEEEECCCCcEEEcc---CCCCEEEEEECCCCCE----EEEEEcCCC-------------CEEEEEEC----------
Confidence 57999999999998882 3345788999999999 999874332 15888897
Q ss_pred hhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceec
Q 005093 242 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 321 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~ 321 (715)
++++.++++.....+...+|||||++|++.+... .++++++.++....+...
T Consensus 74 -------~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~---------- 125 (360)
T d1k32a3 74 -------RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF-----------EIMTVDLETGKPTVIERS---------- 125 (360)
T ss_dssp -------TTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS-----------EEEEEETTTCCEEEEEEC----------
T ss_pred -------CCCcEEEeeCCCceEEeeeecccccccceecccc-----------ccccccccccceeeeeec----------
Confidence 8889999998888899999999999999887663 488888877554222110
Q ss_pred CCCCCccccccCCCCCCccccCCCEEEEEeeeC-------CeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEE
Q 005093 322 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~-------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~ 394 (715)
.......++|+|||+.|++..... ....++.+|+.+++...++..........++++|+.|++.
T Consensus 126 ---------~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 196 (360)
T d1k32a3 126 ---------REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL 196 (360)
T ss_dssp ---------SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred ---------ccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEE
Confidence 011345788999999888876532 3456888999999999888776655556899999998876
Q ss_pred Ee
Q 005093 395 SS 396 (715)
Q Consensus 395 ~~ 396 (715)
..
T Consensus 197 s~ 198 (360)
T d1k32a3 197 SY 198 (360)
T ss_dssp ES
T ss_pred eC
Confidence 54
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.53 E-value=6.5e-17 Score=163.15 Aligned_cols=234 Identities=10% Similarity=0.019 Sum_probs=127.8
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-----cchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccc
Q 005093 466 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 540 (715)
Q Consensus 466 ~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-----~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~ 540 (715)
...++.|. ..++.| ||++||++.+.... .+...++.++++||.|+++|+||.+.++....
T Consensus 47 ~v~~~~p~---~~~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~----------- 111 (318)
T d1qlwa_ 47 YVRYQIPQ---RAKRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDIS----------- 111 (318)
T ss_dssp EEEEEEET---TCCSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCH-----------
T ss_pred EEEEECCC---CCCCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccc-----------
Confidence 34466776 445667 67799988664221 12346889999999999999999555433221
Q ss_pred hhhHHHHHHHHH---HcCCCCCceEEEEEeChhHHHHHHHHhhCCCce-eEEEecCCcchhhhhccCCCCC-C--ceeee
Q 005093 541 VNDVLTAIDHVI---DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-VAAAARNPLCNLALMVGTTDIP-D--WCYVE 613 (715)
Q Consensus 541 ~~d~~~~i~~l~---~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~-~~~v~~~~~~~~~~~~~~~~~~-~--~~~~~ 613 (715)
..+.....+++. ........++.++|||+||.++..++....... ...++.++.............. . .....
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (318)
T d1qlwa_ 112 AINAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAI 191 (318)
T ss_dssp HHHHHHTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHHHh
Confidence 111111111111 111123456778899999988777665443221 1111111111100000000000 0 00000
Q ss_pred ccCCCCC-CCCCCCCC-hhhHH-------------HHHhcCchhhccCCCCcEEEEeeCCCCcCCc-----hHHHHHHHH
Q 005093 614 SYGSKGK-DSFTESPS-VEDLT-------------RFHSKSPISHISKVKTPTIFLLGAQDLRVPV-----SNGLQYARA 673 (715)
Q Consensus 614 ~~~~~~~-~~~~~~~~-~~~~~-------------~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~-----~~~~~~~~~ 673 (715)
....... ........ +.... ......+......+++|+|+++|++|.++|. ..+..+++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Lii~G~~D~~~p~~~~~~~~~~~~~~~ 271 (318)
T d1qlwa_ 192 KLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDA 271 (318)
T ss_dssp HHTSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSCEEEEECSSCTTCTTTHHHHHHHHHHHHH
T ss_pred hhccccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhhccCCEEEEecCcCcccChhhhHHHHHHHHHHH
Confidence 0000000 00000000 00000 0011234455667889999999999999985 445567888
Q ss_pred HHHcCCcEEEEEeC-----CCCccCCCCCchHHHHHHHHHHHHHhc
Q 005093 674 LREKGVETKVIVFP-----NDVHGIERPQSDFESFLNIGLWFKKYC 714 (715)
Q Consensus 674 l~~~g~~~~~~~~~-----~~~H~~~~~~~~~~~~~~i~~wl~~~l 714 (715)
++++|.+++++.+| |++|.+..+.+.+++.+.|.+||+++-
T Consensus 272 l~~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~~ 317 (318)
T d1qlwa_ 272 LNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRNT 317 (318)
T ss_dssp HHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhcc
Confidence 99999999999976 567998877777899999999999873
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.49 E-value=2.3e-14 Score=140.84 Aligned_cols=198 Identities=12% Similarity=0.000 Sum_probs=117.1
Q ss_pred cCCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-----cchHHHHHH----HhCCcEEEEEcCCCCCCCchhh
Q 005093 458 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFL----SSVGYSLLIVNYRGSLGFGEEA 528 (715)
Q Consensus 458 ~~~~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-----~~~~~~~~l----a~~G~~vi~~d~rG~~~~g~~~ 528 (715)
+..+| +...++|+|+++++.+++|+|+++||++...... ........+ ....+.|+.+++++....+..+
T Consensus 33 ~~~~~-~r~~~vylP~~y~~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 111 (273)
T d1wb4a1 33 TGING-TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNF 111 (273)
T ss_dssp EETTE-EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECCSCSTTCCTTTH
T ss_pred ecCCC-eEEEEEEeCCCCCCCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccccCCCCCccccc
Confidence 33344 4588999999998889999999999976543211 111222222 2346889999988755443332
Q ss_pred hhcCCCCCCccchhhHHHHHH---------HHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh
Q 005093 529 LQSLPGKVGSQDVNDVLTAID---------HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 599 (715)
Q Consensus 529 ~~~~~~~~~~~~~~d~~~~i~---------~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 599 (715)
... ...+....++ .+..+..+|.++++|+|+|+||++++.+|.++|++|+++++++|......
T Consensus 112 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~~~~ 183 (273)
T d1wb4a1 112 YQE--------FRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGN 183 (273)
T ss_dssp HHH--------HHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCBSS
T ss_pred hhc--------ccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcccccCC
Confidence 111 0111111111 11122236889999999999999999999999999999999998653210
Q ss_pred hccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHH----
Q 005093 600 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR---- 675 (715)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~---- 675 (715)
. ......................++++.+|+.|..+ .......+.+.
T Consensus 184 ~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~ 234 (273)
T d1wb4a1 184 S---------------------------PQDKANSIAEAINRSGLSKREYFVFAATGSEDIAY--ANMNPQIEAMKALPH 234 (273)
T ss_dssp S---------------------------HHHHHHHHHHHHHHHTCCTTSCEEEEEEETTCTTH--HHHHHHHHHHHTSTT
T ss_pred C---------------------------cccccccchhhhhhhhhcccceEEEEecCCCCccc--ccchhHHHHHHHHHH
Confidence 0 00000000000000112233345777778777544 33344444433
Q ss_pred ------HcCCcEEEEEeCCCCccC
Q 005093 676 ------EKGVETKVIVFPNDVHGI 693 (715)
Q Consensus 676 ------~~g~~~~~~~~~~~~H~~ 693 (715)
..+..+.+.++++++|.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~ggH~w 258 (273)
T d1wb4a1 235 FDYTSDFSKGNFYFLVAPGATHWW 258 (273)
T ss_dssp CCBBSCTTTCCEEEEEETTCCSSH
T ss_pred HHHHHHhcCCCEEEEEECCCccCH
Confidence 235578889999999964
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=1.9e-13 Score=133.32 Aligned_cols=216 Identities=15% Similarity=0.141 Sum_probs=128.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 537 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~ 537 (715)
.|..|...++.|. .|+|+++||.........|.. ..+.++++++.|++||-.... +...+. . .+
T Consensus 14 ~~r~~~~~v~~~~-------~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g~~~~-~y~~~~----~-~~ 80 (267)
T d1r88a_ 14 MGRDIPVAFLAGG-------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYS-MYTNWE----Q-DG 80 (267)
T ss_dssp TTEEEEEEEECCS-------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTS-TTSBCS----S-CT
T ss_pred CCceeeEEEECCC-------CCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECCCCCc-CCcccc----c-cc
Confidence 4667877776543 399999999433322233433 567788999999999842211 222221 1 11
Q ss_pred ccchhhHH--HHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeecc
Q 005093 538 SQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 615 (715)
Q Consensus 538 ~~~~~d~~--~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (715)
....++.. +.+.++.++..+|+++++|+|+||||++|+.+++++|++|+++++++|.++........... ......
T Consensus 81 ~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~~~~~~~~--~~~~~~ 158 (267)
T d1r88a_ 81 SKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIA--AGMQQF 158 (267)
T ss_dssp TCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHHHHH--HHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCccchhhhh--hHHhhh
Confidence 11233322 45677777777899999999999999999999999999999999999987542211000000 000000
Q ss_pred CCCCCCCCCCCCChhhHHHHHhcCchhhccC---CCCcEEEEeeCCCCcCCc-----------hHHHHHHHHHHHcC-Cc
Q 005093 616 GSKGKDSFTESPSVEDLTRFHSKSPISHISK---VKTPTIFLLGAQDLRVPV-----------SNGLQYARALREKG-VE 680 (715)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---i~~P~Lii~G~~D~~v~~-----------~~~~~~~~~l~~~g-~~ 680 (715)
+......+.+. .....+.+.+|...+++ ...++++.+|..|..+.. ..+..+.+++++.+ .+
T Consensus 159 ~~~~~~~~~g~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 235 (267)
T d1r88a_ 159 GGVDTNGMWGA---PQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHN 235 (267)
T ss_dssp HCCCTHHHHCC---GGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cCCcHhhccCC---cchHhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhhhHHHHHHHHHHcCCCc
Confidence 00000000000 11122344556544433 346789999999866543 23456777777764 57
Q ss_pred EEEEEeCCCCccCC
Q 005093 681 TKVIVFPNDVHGIE 694 (715)
Q Consensus 681 ~~~~~~~~~~H~~~ 694 (715)
+.+...++++|.+.
T Consensus 236 ~~~~~~~~G~H~W~ 249 (267)
T d1r88a_ 236 GHFDFPASGDNGWG 249 (267)
T ss_dssp EEEECCSSCCSSHH
T ss_pred EEEEEcCCCeEChH
Confidence 88888888899764
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=8.8e-14 Score=136.82 Aligned_cols=210 Identities=15% Similarity=0.084 Sum_probs=123.2
Q ss_pred CCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCC--CCccchhh--HHHHHHHH
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--VGSQDVND--VLTAIDHV 551 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~--~~~~~~~d--~~~~i~~l 551 (715)
+++|+|+++||.+.......|.. ..+.++++|++|++||-.... +...+....... ......++ +.+.+.++
T Consensus 27 ~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i 105 (280)
T d1dqza_ 27 GGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSS-FYTDWYQPSQSNGQNYTYKWETFLTREMPAWL 105 (280)
T ss_dssp CSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTC-TTSBCSSSCTTTTCCSCCBHHHHHHTHHHHHH
T ss_pred CCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCCCC-cCccccCCcccccCCcchhHHHHHHHHHHHHH
Confidence 36799999999554322334443 456788999999999953222 222221111111 11112222 33566677
Q ss_pred HHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhh
Q 005093 552 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 631 (715)
Q Consensus 552 ~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (715)
.++..+|+++++|+|+||||++|+.+|+++|++|+++++++|.++.......... .. .....+......+.+.+ .
T Consensus 106 ~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~---~ 180 (280)
T d1dqza_ 106 QANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLI-GL-AMNDSGGYNANSMWGPS---S 180 (280)
T ss_dssp HHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTHHHHH-HH-HHHHTTSCCHHHHHCST---T
T ss_pred HHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcccCcchhhh-hh-hHhhccCCCHhhccCCc---c
Confidence 7776789999999999999999999999999999999999998753211000000 00 00000000000000111 1
Q ss_pred HHHHHhcCchhhccCC---CCcEEEEeeCCCCcCCc--------------hHHHHHHHHHHHcCCcEEEEE-eCCCCccC
Q 005093 632 LTRFHSKSPISHISKV---KTPTIFLLGAQDLRVPV--------------SNGLQYARALREKGVETKVIV-FPNDVHGI 693 (715)
Q Consensus 632 ~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~~v~~--------------~~~~~~~~~l~~~g~~~~~~~-~~~~~H~~ 693 (715)
...+...+|...++++ ..++++.+|..|...+. ..+..+.+++++++....... .++++|.+
T Consensus 181 ~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~g~~~~~~~~~~~GgH~W 260 (280)
T d1dqza_ 181 DPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSW 260 (280)
T ss_dssp SHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSH
T ss_pred hhhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccccchhhHHHHHHHHHHHHHHHHcCCCeEEEEEcCCCccCc
Confidence 1234556776655543 36789999988865432 345677888888887654444 45678976
Q ss_pred C
Q 005093 694 E 694 (715)
Q Consensus 694 ~ 694 (715)
.
T Consensus 261 ~ 261 (280)
T d1dqza_ 261 P 261 (280)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=1.7e-13 Score=134.35 Aligned_cols=233 Identities=11% Similarity=0.061 Sum_probs=136.6
Q ss_pred CCceEEEEEEecCCCC-----CCCCCcEEEEEcCCCCCCCCccchH---HHHHHHhCCcEEEEEcCCCCC----------
Q 005093 461 AQKPFEAIFVSSSHKK-----DCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSL---------- 522 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~-----~~~~~P~vv~iHGg~~~~~~~~~~~---~~~~la~~G~~vi~~d~rG~~---------- 522 (715)
-|.++...+|+|+++. ..+++|+|+++||.+.. ...|.. ....+.+.+++|++++.....
T Consensus 24 l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~--~~~w~~~~~~~~~~~~~~~~vv~~~~~p~~~~~~~~~~~~ 101 (299)
T d1pv1a_ 24 TKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT--PDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGS 101 (299)
T ss_dssp SSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCC--HHHHHHHSCHHHHHHHHTCEEEECCSSCCSTTSCCCTTCC
T ss_pred cCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCC--HHHHHHhhhHHHHHHHcCCceecCCCcccccccCCccccc
Confidence 5678889999999873 34679999999996543 233322 345567789999998742210
Q ss_pred ---CCchhhhhcCCC-CC-CccchhhHH--HHHHHHHHcCCC-------CCceEEEEEeChhHHHHHHHHhh--CCCcee
Q 005093 523 ---GFGEEALQSLPG-KV-GSQDVNDVL--TAIDHVIDMGLA-------NPSKVTVVGGSHGGFLTTHLIGQ--APDKFV 586 (715)
Q Consensus 523 ---~~g~~~~~~~~~-~~-~~~~~~d~~--~~i~~l~~~~~~-------d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~ 586 (715)
+.+..+...... .+ +....++.. +.+.++.+...+ +.++.+|+|+||||+.|+.++.+ +|++|.
T Consensus 102 ~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~al~~~~p~~f~ 181 (299)
T d1pv1a_ 102 WDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYLKGYSGKRYK 181 (299)
T ss_dssp SSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHHHHTGGGTCCS
T ss_pred ccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHHHHhcCCCceE
Confidence 001111000000 00 001122211 333444443222 33679999999999999999976 489999
Q ss_pred EEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcCchhhccC---C-CCcEEEEeeCCCCcC
Q 005093 587 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK---V-KTPTIFLLGAQDLRV 662 (715)
Q Consensus 587 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---i-~~P~Lii~G~~D~~v 662 (715)
++++.+|..+........ ......++ .....+...+|...+.+ . ..++++.+|++|...
T Consensus 182 ~~~s~s~~~~~~~~~~~~----~~~~~~~g-------------~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~D~~~ 244 (299)
T d1pv1a_ 182 SCSAFAPIVNPSNVPWGQ----KAFKGYLG-------------EEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFL 244 (299)
T ss_dssp EEEEESCCCCSTTSHHHH----HHHHHHSC-------------C----CGGGCHHHHGGGSCCCTTCCEEEECCTTCTTT
T ss_pred EEeeccCcCCcccccchh----hhhhhhcc-------------cchhhhhhcCHHHHHHHhhccCCcceeEecCCCCcch
Confidence 999999976532110000 00000001 01112233444333322 2 257899999999877
Q ss_pred Cch-HHHHHHHHHHHcCCc--EEEEEeCCCCccCCCCCchHHHHHHHHHHHHHhcC
Q 005093 663 PVS-NGLQYARALREKGVE--TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 715 (715)
Q Consensus 663 ~~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 715 (715)
... ....+.++++.++.+ +++...+|.+|.+... ...+.+.+.|+.++|+
T Consensus 245 ~~~~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw~yW---~~~i~~~l~f~a~~lg 297 (299)
T d1pv1a_ 245 EEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYFV---STFVPEHAEFHARNLG 297 (299)
T ss_dssp TTTCCTHHHHHHHTTSTTTTSEEEECCTTCCSSHHHH---HHHHHHHHHHHHHHTT
T ss_pred hhhhcHHHHHHHHHhcCCCcceEEEecCCCCcCHHHH---HHHHHHHHHHHHHhcC
Confidence 543 346788888888765 6777778888986432 3556778899998875
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.9e-13 Score=132.89 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=76.4
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHhC--CcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCC
Q 005093 481 DPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 558 (715)
Q Consensus 481 ~P~vv~iHGg~~~~~~~~~~~~~~~la~~--G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d 558 (715)
.| ||++||.+.+ ...|...+..|.+. ||.|+++|+|| +|.+... ....++++.+.+..+.+.. .
T Consensus 3 ~P-vvllHG~~~~--~~~~~~~~~~l~~~~~~~~v~~~d~~G---~g~S~~~------~~~~~~~~~~~l~~~l~~l--~ 68 (268)
T d1pjaa_ 3 KP-VIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFD---GRESLRP------LWEQVQGFREAVVPIMAKA--P 68 (268)
T ss_dssp CC-EEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSC---SGGGGSC------HHHHHHHHHHHHHHHHHHC--T
T ss_pred CC-EEEECCCCCC--HHHHHHHHHHHHhhCCCeEEEEeCCCC---CCCCCCc------cccCHHHHHHHHHHHHhcc--C
Confidence 45 6789996554 56888889998764 89999999999 7776421 1234566666666666653 3
Q ss_pred CceEEEEEeChhHHHHHHHHhhCCC-ceeEEEecCCc
Q 005093 559 PSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPL 594 (715)
Q Consensus 559 ~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~ 594 (715)
+++.|+||||||.+++.+|.++|+ +++.+|++++.
T Consensus 69 -~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~~ 104 (268)
T d1pjaa_ 69 -QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSP 104 (268)
T ss_dssp -TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCC
T ss_pred -CeEEEEccccHHHHHHHHHHHCCccccceEEEECCC
Confidence 789999999999999999999998 69999888763
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.43 E-value=1.2e-12 Score=135.65 Aligned_cols=120 Identities=16% Similarity=0.135 Sum_probs=91.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCC------cEEEEEcCCCCCCCchhhhhcCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG------YSLLIVNYRGSLGFGEEALQSLPG 534 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G------~~vi~~d~rG~~~~g~~~~~~~~~ 534 (715)
+|++||..-... ..+..|.||++||.+.+ ...|...+..|++.| |.|++||+|| ||.+.. +.
T Consensus 90 ~G~~iHf~h~~~----~~~~~~pLlLlHG~P~s--~~~w~~vi~~La~~g~~~~~~f~VIaPDLpG---~G~S~~---P~ 157 (394)
T d1qo7a_ 90 EGLTIHFAALFS----EREDAVPIALLHGWPGS--FVEFYPILQLFREEYTPETLPFHLVVPSLPG---YTFSSG---PP 157 (394)
T ss_dssp TTEEEEEEEECC----SCTTCEEEEEECCSSCC--GGGGHHHHHHHHHHCCTTTCCEEEEEECCTT---STTSCC---CC
T ss_pred CCEEEEEEEEec----cCCCCCEEEEecccccc--HHHHHHHHHhhccccCCcccceeeecccccc---cCCCCC---CC
Confidence 789998654443 34567889999997766 678999999999988 9999999999 766542 22
Q ss_pred CCCccchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCc
Q 005093 535 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594 (715)
Q Consensus 535 ~~~~~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 594 (715)
........++.+.+..+.... ..++..++|||+||.++..++..+|+.+.++++....
T Consensus 158 ~~~~y~~~~~a~~~~~l~~~l--g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~ 215 (394)
T d1qo7a_ 158 LDKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCA 215 (394)
T ss_dssp SSSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCccCHHHHHHHHHHHHhhc--cCcceEEEEecCchhHHHHHHHHhhccccceeEeeec
Confidence 222344667777777776663 3567899999999999999999999998888776543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.39 E-value=3.7e-11 Score=118.68 Aligned_cols=269 Identities=14% Similarity=0.109 Sum_probs=164.2
Q ss_pred ccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccc
Q 005093 12 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVH 90 (715)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 90 (715)
+.....|.++|+++..- ..+ .++. +.....++||||++|+.....+ ..+..++ .+++..+.+......
T Consensus 8 ~~~~~~v~v~D~~t~~~-~~~---i~~g---~~p~~va~spdG~~l~v~~~~~---~~i~v~d~~t~~~~~~~~~~~~~- 76 (301)
T d1l0qa2 8 NSESDNISVIDVTSNKV-TAT---IPVG---SNPMGAVISPDGTKVYVANAHS---NDVSIIDTATNNVIATVPAGSSP- 76 (301)
T ss_dssp ETTTTEEEEEETTTTEE-EEE---EECS---SSEEEEEECTTSSEEEEEEGGG---TEEEEEETTTTEEEEEEECSSSE-
T ss_pred ECCCCEEEEEECCCCeE-EEE---EECC---CCceEEEEeCCCCEEEEEECCC---CEEEEEECCCCceeeeeeccccc-
Confidence 33444577767655431 111 1211 2356789999999986554332 2455545 455555544443333
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEcc
Q 005093 91 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 170 (715)
Q Consensus 91 ~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 170 (715)
..+.|++||+.++..... ...+.+++..
T Consensus 77 ---------~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~ 104 (301)
T d1l0qa2 77 ---------QGVAVSPDGKQVYVTNMA-------------------------------------------SSTLSVIDTT 104 (301)
T ss_dssp ---------EEEEECTTSSEEEEEETT-------------------------------------------TTEEEEEETT
T ss_pred ---------cccccccccccccccccc-------------------------------------------cceeeecccc
Confidence 689999999988775332 2568889998
Q ss_pred CCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCC
Q 005093 171 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 250 (715)
Q Consensus 171 ~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (715)
+++.... ...........|+|||+. +++... ....+...+. .+
T Consensus 105 ~~~~~~~--~~~~~~~~~~~~~~dg~~----~~~~~~--------------~~~~~~~~~~-----------------~~ 147 (301)
T d1l0qa2 105 SNTVAGT--VKTGKSPLGLALSPDGKK----LYVTNN--------------GDKTVSVINT-----------------VT 147 (301)
T ss_dssp TTEEEEE--EECSSSEEEEEECTTSSE----EEEEET--------------TTTEEEEEET-----------------TT
T ss_pred cceeeee--ccccccceEEEeecCCCe----eeeeec--------------cccceeeeec-----------------cc
Confidence 8876554 233334567889999998 776652 2235667775 44
Q ss_pred CCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCcccc
Q 005093 251 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 330 (715)
Q Consensus 251 ~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~ 330 (715)
.................++||++.++...... ..+.+.+.......... . . .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-------~---~---~----- 199 (301)
T d1l0qa2 148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDS----------MSISVIDTVTNSVIDTV-------K---V---E----- 199 (301)
T ss_dssp TEEEEEEECCSSEEEEEECTTSSEEEEEETTT----------TEEEEEETTTTEEEEEE-------E---C---S-----
T ss_pred cceeeecccCCCceEEEeeccccceeeecccc----------cccccccccceeeeecc-------c---c---c-----
Confidence 54444444444566788999999887666543 23445554442221100 0 0 0
Q ss_pred ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 331 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 331 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
.....+.++++++.+++.........|+.+|+.+++...............|++||++|+++.... ..|.+.|+.
T Consensus 200 --~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~---~~i~v~D~~ 274 (301)
T d1l0qa2 200 --AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFC---NTVSVIDTA 274 (301)
T ss_dssp --SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT---TEEEEEETT
T ss_pred --CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCC---CeEEEEECC
Confidence 012345688999988887766666789999999988765443333345568899999887665432 257788876
Q ss_pred ccC
Q 005093 411 DKA 413 (715)
Q Consensus 411 ~~~ 413 (715)
+++
T Consensus 275 t~~ 277 (301)
T d1l0qa2 275 TNT 277 (301)
T ss_dssp TTE
T ss_pred CCe
Confidence 543
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=99.37 E-value=3.1e-12 Score=116.20 Aligned_cols=169 Identities=16% Similarity=0.060 Sum_probs=115.2
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCCce
Q 005093 482 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 561 (715)
Q Consensus 482 P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~~~ 561 (715)
| ||++||.+.. ...|..+++.|+++||.|+.+++++.+. .. .......+++.+.++.+.++ ...++
T Consensus 4 P-Vv~vHG~~~~--~~~~~~l~~~l~~~g~~~~~~~~~~~~~---~~------~~~~~~~~~l~~~i~~~~~~--~~~~~ 69 (179)
T d1ispa_ 4 P-VVMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWD---KT------GTNYNNGPVLSRFVQKVLDE--TGAKK 69 (179)
T ss_dssp C-EEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSC---TT------CCHHHHHHHHHHHHHHHHHH--HCCSC
T ss_pred C-EEEECCCCCC--HHHHHHHHHHHHHcCCeEEEEecCCccc---cc------cccchhhhhHHHHHHHHHHh--cCCce
Confidence 5 6779996544 5678889999999999999999887332 21 11112356677777777665 24578
Q ss_pred EEEEEeChhHHHHHHHHhhC--CCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhhHHHHHhcC
Q 005093 562 VTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 639 (715)
Q Consensus 562 i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 639 (715)
+.|+||||||.++..++.++ +++++.+|++++........ .+ +.
T Consensus 70 v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~~------------~l-----------~~----------- 115 (179)
T d1ispa_ 70 VDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK------------AL-----------PG----------- 115 (179)
T ss_dssp EEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB------------CC-----------CC-----------
T ss_pred EEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchhh------------hc-----------CC-----------
Confidence 99999999999999988776 57899999888754321100 00 00
Q ss_pred chhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHHHHH
Q 005093 640 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 712 (715)
Q Consensus 640 p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 712 (715)
.......|++.++|..|.+|++..+. + ...+.+.+++.+|...... .++++.+.+||+.
T Consensus 116 ---~~~~~~~~~~~i~~~~D~~v~~~~~~-----l----~~~~~~~~~~~~H~~l~~~--~~v~~~i~~~L~~ 174 (179)
T d1ispa_ 116 ---TDPNQKILYTSIYSSADMIVMNYLSR-----L----DGARNVQIHGVGHIGLLYS--SQVNSLIKEGLNG 174 (179)
T ss_dssp ---SCTTCCCEEEEEEETTCSSSCHHHHC-----C----BTSEEEEESSCCTGGGGGC--HHHHHHHHHHHTT
T ss_pred ---cccccCceEEEEEecCCcccCchhhc-----C----CCceEEEECCCCchhhccC--HHHHHHHHHHHhc
Confidence 01123478999999999999875431 1 2245678899999644322 3678888888864
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.32 E-value=4.1e-10 Score=112.08 Aligned_cols=255 Identities=15% Similarity=0.167 Sum_probs=146.0
Q ss_pred EEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccC
Q 005093 18 MLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYA 95 (715)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (715)
+.++++++... ...++. +.+.+...+|||||++||-....+ ...+| ..+.......+.. ..+
T Consensus 40 v~i~~~~~~~~-~~~~~~-----H~~~v~~~~~sp~g~~latg~~dg-----~i~iwd~~~~~~~~~~~~~~-~~~---- 103 (311)
T d1nr0a1 40 VYTVPVGSLTD-TEIYTE-----HSHQTTVAKTSPSGYYCASGDVHG-----NVRIWDTTQTTHILKTTIPV-FSG---- 103 (311)
T ss_dssp EEEEETTCSSC-CEEECC-----CSSCEEEEEECTTSSEEEEEETTS-----EEEEEESSSTTCCEEEEEEC-SSS----
T ss_pred EEEEECCCCce-eEEEcC-----CCCCEEEEEEeCCCCeEeccccCc-----eEeeeeeecccccccccccc-ccC----
Confidence 55555654432 222222 336789999999999998665542 34455 2332222221111 111
Q ss_pred CCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE
Q 005093 96 DGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ 175 (715)
Q Consensus 96 ~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 175 (715)
.+..+.|+|||+.|+..+... ...+.+|++++++..
T Consensus 104 --~v~~v~~s~d~~~l~~~~~~~------------------------------------------~~~~~v~~~~~~~~~ 139 (311)
T d1nr0a1 104 --PVKDISWDSESKRIAAVGEGR------------------------------------------ERFGHVFLFDTGTSN 139 (311)
T ss_dssp --CEEEEEECTTSCEEEEEECCS------------------------------------------SCSEEEEETTTCCBC
T ss_pred --ccccccccccccccccccccc------------------------------------------ccccccccccccccc
Confidence 227899999999988765321 144678888877654
Q ss_pred eecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-e
Q 005093 176 AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-V 254 (715)
Q Consensus 176 ~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 254 (715)
..- ......+..++|+|+|+. ++.++.. +..|..+|+ .+++. .
T Consensus 140 ~~l-~~h~~~v~~v~~~~~~~~----~l~sgs~--------------d~~i~i~d~-----------------~~~~~~~ 183 (311)
T d1nr0a1 140 GNL-TGQARAMNSVDFKPSRPF----RIISGSD--------------DNTVAIFEG-----------------PPFKFKS 183 (311)
T ss_dssp BCC-CCCSSCEEEEEECSSSSC----EEEEEET--------------TSCEEEEET-----------------TTBEEEE
T ss_pred ccc-ccccccccccccccccee----eeccccc--------------ccccccccc-----------------ccccccc
Confidence 321 222335678899999997 6665532 235778886 44443 3
Q ss_pred ecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCC
Q 005093 255 NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 334 (715)
Q Consensus 255 ~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~ 334 (715)
.+......+....|+|||+.|+..+.+. .+.++|+.++.....-. .. ..... .+...
T Consensus 184 ~~~~~~~~i~~v~~~p~~~~l~~~~~d~-----------~v~~~d~~~~~~~~~~~----------~~-~~~~~-~h~~~ 240 (311)
T d1nr0a1 184 TFGEHTKFVHSVRYNPDGSLFASTGGDG-----------TIVLYNGVDGTKTGVFE----------DD-SLKNV-AHSGS 240 (311)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTS-----------CEEEEETTTCCEEEECB----------CT-TSSSC-SSSSC
T ss_pred ccccccccccccccCccccccccccccc-----------ccccccccccccccccc----------cc-ccccc-ccccc
Confidence 4444566688899999999888776553 37778876644311000 00 00000 01223
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeEEEeecCCEEEEE
Q 005093 335 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~~~~~l~~~ 394 (715)
+..++|+|||+.|+ +...++ .|..+|+.+++..+...... ......+.++++.++..
T Consensus 241 V~~~~~s~~~~~l~-tgs~Dg--~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~ 299 (311)
T d1nr0a1 241 VFGLTWSPDGTKIA-SASADK--TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 299 (311)
T ss_dssp EEEEEECTTSSEEE-EEETTS--EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred ccccccCCCCCEEE-EEeCCC--eEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEE
Confidence 45678999998554 444444 56677888998765433222 12223455555555433
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.5e-11 Score=122.64 Aligned_cols=266 Identities=10% Similarity=0.035 Sum_probs=152.8
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe---cCCccEEEEec-CccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
..+...+|||||++||-.. . + ...+| .++....+... ..... +.+..++|||||++|+..+.+.
T Consensus 52 ~~V~~v~fs~~g~~latg~-d--g---~V~iWd~~~~~~~~~~~~~~~~~h~------~~I~~v~~s~dg~~l~s~~~dg 119 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTGG-K--G---CVKVWDISHPGNKSPVSQLDCLNRD------NYIRSCKLLPDGCTLIVGGEAS 119 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-B--S---EEEEEETTSTTCCSCSEEEECSCTT------SBEEEEEECTTSSEEEEEESSS
T ss_pred CcEEEEEECCCCCEEEEEE-C--C---EEEEEEccCCcccceeEEeeecCCC------CcEEEEEEcCCCCEEEEeeccc
Confidence 5688899999999998643 1 2 34455 22222211111 11111 2337899999999998766544
Q ss_pred CCCCCCccCCCCCCC--CCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCC
Q 005093 119 SPSKPTFSLGSTKGG--SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 196 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~ 196 (715)
... .|........ ..............+.++............+.++++.+++..... ......+..++|+|+++
T Consensus 120 ~i~--iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~ 196 (337)
T d1gxra_ 120 TLS--IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGT 196 (337)
T ss_dssp EEE--EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSS
T ss_pred ccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 221 2221111100 000011111223334554211112233468999999988866552 22334567889999999
Q ss_pred CCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEE
Q 005093 197 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 276 (715)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~ 276 (715)
. ++... .+..|..+|+ .+++..........+....|+|+++.|+
T Consensus 197 ~----~~~~~---------------~d~~v~i~d~-----------------~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 240 (337)
T d1gxra_ 197 K----LWTGG---------------LDNTVRSWDL-----------------REGRQLQQHDFTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp E----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred c----ccccc---------------cccccccccc-----------------ccceeecccccccceEEEEEcccccccc
Confidence 7 77654 2236778886 5554443334455678889999999887
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCe
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 356 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~ 356 (715)
..+.+. .+.++|+.+++...... +...+..+.|+|||+.|+ +...++
T Consensus 241 ~~~~d~-----------~i~i~d~~~~~~~~~~~--------------------~~~~i~~v~~s~~g~~l~-s~s~Dg- 287 (337)
T d1gxra_ 241 VGMESS-----------NVEVLHVNKPDKYQLHL--------------------HESCVLSLKFAYCGKWFV-STGKDN- 287 (337)
T ss_dssp EEETTS-----------CEEEEETTSSCEEEECC--------------------CSSCEEEEEECTTSSEEE-EEETTS-
T ss_pred eecccc-----------ccccccccccccccccc--------------------cccccceEEECCCCCEEE-EEeCCC-
Confidence 665442 47888887654321110 112345678999998554 444444
Q ss_pred eEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEE
Q 005093 357 QVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIA 393 (715)
Q Consensus 357 ~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~ 393 (715)
.|..+|+.+++..........+....|+++++.|+.
T Consensus 288 -~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t 323 (337)
T d1gxra_ 288 -LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT 323 (337)
T ss_dssp -EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred -eEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEE
Confidence 566678888887666555444445578888776654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.25 E-value=2e-10 Score=116.35 Aligned_cols=77 Identities=9% Similarity=-0.020 Sum_probs=52.4
Q ss_pred CCCCccccCCCEEEEEeeeC-------CeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEE
Q 005093 335 ILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 407 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~-------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~ 407 (715)
...+.+++|++.+++..... ....|+.+|+.+++...............|++||+.++++....+ ..|+++
T Consensus 251 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d--~~i~v~ 328 (355)
T d2bbkh_ 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD--KTLYIH 328 (355)
T ss_dssp SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT--TEEEEE
T ss_pred eEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCC--CEEEEE
Confidence 34567899999888776543 346799999998887654332222334678999987766665433 568888
Q ss_pred eecccC
Q 005093 408 YFVDKA 413 (715)
Q Consensus 408 ~~~~~~ 413 (715)
|+.+++
T Consensus 329 D~~tg~ 334 (355)
T d2bbkh_ 329 DAESGE 334 (355)
T ss_dssp ETTTCC
T ss_pred ECCCCC
Confidence 876654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.3e-09 Score=108.92 Aligned_cols=273 Identities=15% Similarity=0.107 Sum_probs=143.5
Q ss_pred ccccceEEEEEEEeecCCC-CccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCC-ccEEEEec--
Q 005093 10 LANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHV-- 85 (715)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~-- 85 (715)
..+.....|.+++++..+. +..+....+ +.+...+|||||++|+.....+ +.-.+|.+...+ ..+.....
T Consensus 8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~-----~~v~~la~spDG~~L~v~~~~d-~~i~~~~i~~~~~~~~~~~~~~~ 81 (333)
T d1ri6a_ 8 IASPESQQIHVWNLNHEGALTLTQVVDVP-----GQVQPMVVSPDKRYLYVGVRPE-FRVLAYRIAPDDGALTFAAESAL 81 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEECS-----SCCCCEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEEEEEEEEC
T ss_pred EECCCCCcEEEEEEcCCCCeEEEEEEcCC-----CCEeEEEEeCCCCEEEEEECCC-CeEEEEEEeCCCCcEEEeeeccc
Confidence 3444556677777876543 112222333 5678899999999996554332 444556665333 33332222
Q ss_pred CccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEE
Q 005093 86 PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLF 165 (715)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (715)
.... ..++|||||++|+..... ...+.
T Consensus 82 ~~~p----------~~l~~spDg~~l~v~~~~-------------------------------------------~~~v~ 108 (333)
T d1ri6a_ 82 PGSL----------THISTDHQGQFVFVGSYN-------------------------------------------AGNVS 108 (333)
T ss_dssp SSCC----------SEEEECTTSSEEEEEETT-------------------------------------------TTEEE
T ss_pred CCCc----------eEEEEcCCCCEEeecccC-------------------------------------------CCcee
Confidence 1222 579999999998775322 14566
Q ss_pred EEEccCCceEeec-CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhh
Q 005093 166 VININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 244 (715)
Q Consensus 166 ~~~~~~g~~~~l~-~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (715)
+++.+........ ..........+.++||++. ++..... ...|..+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~----~~~~~~~--------------~~~i~~~~~~------------ 158 (333)
T d1ri6a_ 109 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT----LWVPALK--------------QDRICLFTVS------------ 158 (333)
T ss_dssp EEEEETTEEEEEEEEECCCTTBCCCEECTTSSE----EEEEEGG--------------GTEEEEEEEC------------
T ss_pred eeccccccceecccccCCCccceEEEeeeccee----eeccccc--------------cceeeEEEec------------
Confidence 6666655443321 0122334557889999997 6655421 1245555541
Q ss_pred ccCCCCCCce-----ecC-CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeec
Q 005093 245 ESSSEDLPVV-----NLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 318 (715)
Q Consensus 245 ~~~~~~~~~~-----~lt-~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~ 318 (715)
...... ... ..........|+++++.++...... ....++.++...... .. .....
T Consensus 159 ----~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~---~~--~~~~~- 220 (333)
T d1ri6a_ 159 ----DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN--------SSVDVWELKDPHGNI---EC--VQTLD- 220 (333)
T ss_dssp ----TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT--------TEEEEEESSCTTSCC---EE--EEEEE-
T ss_pred ----cCCcceeeeceeeeeecCCCccEEEEeccceeEEeecccc--------CceEEEeecccccce---ee--eeeee-
Confidence 111111 111 1122346688999999876665443 122233332222111 00 00000
Q ss_pred eecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec--CCCCCceeEEEeecCCEEEEE
Q 005093 319 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~--~~~~~~~~~~~s~~~~~l~~~ 394 (715)
...... . .........+++|++.++......+...+|.++..++..+... ..........|++||+.|+..
T Consensus 221 -~~~~~~--~--~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va 293 (333)
T d1ri6a_ 221 -MMPENF--S--DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAA 293 (333)
T ss_dssp -CSCTTC--C--SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEE
T ss_pred -eeecCC--C--ccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEE
Confidence 000000 0 0001224568999998877776677778888887665544332 221222335799999987654
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=99.24 E-value=3.3e-10 Score=112.76 Aligned_cols=229 Identities=13% Similarity=0.156 Sum_probs=135.8
Q ss_pred CCCcEEEEEcCCCCCCCC----------ccc-hHH---HHHHHhCCcEEEEEcCCCCCCCchhhhhcC-CC-------CC
Q 005093 479 SCDPLIVVLHGGPHSVSL----------SSY-SKS---LAFLSSVGYSLLIVNYRGSLGFGEEALQSL-PG-------KV 536 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~----------~~~-~~~---~~~la~~G~~vi~~d~rG~~~~g~~~~~~~-~~-------~~ 536 (715)
.+.++||++|+-.++... ..| ..+ -..+--.-|.||++|..|.+ +|.+..... +. .+
T Consensus 40 ~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~-~~ss~~~s~~p~~~~~yg~~f 118 (362)
T d2pl5a1 40 SKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGC-KGSSGPLSIHPETSTPYGSRF 118 (362)
T ss_dssp TSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCS-SSSSSTTSBCTTTSSBCGGGS
T ss_pred CCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCc-ccccCccccccccccccCcCC
Confidence 456899999993332111 122 111 12344566999999999854 332221111 11 12
Q ss_pred CccchhhHHHHHHHHHHcCCCCCceEE-EEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh------------hccC
Q 005093 537 GSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------------MVGT 603 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~~~~d~~~i~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~------------~~~~ 603 (715)
....+.|+.++-..|+++-.+ +++. ++|.||||+.|+..|.++|+.++.+|++++...... ....
T Consensus 119 P~~t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~D 196 (362)
T d2pl5a1 119 PFVSIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSD 196 (362)
T ss_dssp CCCCHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTS
T ss_pred ccchhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccccccccCHHHHHHHHHHHHHHhcC
Confidence 234588999888888887444 5555 789999999999999999999999998886432100 0000
Q ss_pred ---------CCCCC-------------c----eeeeccCCCC-----------CC--------CCCCCCChhh----HHH
Q 005093 604 ---------TDIPD-------------W----CYVESYGSKG-----------KD--------SFTESPSVED----LTR 634 (715)
Q Consensus 604 ---------~~~~~-------------~----~~~~~~~~~~-----------~~--------~~~~~~~~~~----~~~ 634 (715)
...+. + .+...+.... .+ .+........ ...
T Consensus 197 p~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a 276 (362)
T d2pl5a1 197 PNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKA 276 (362)
T ss_dssp TTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHH
T ss_pred CccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 00000 0 0000010000 00 0000000000 011
Q ss_pred HHhcCch------hhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCC-CCccCCCCCchHHHHHHHH
Q 005093 635 FHSKSPI------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVHGIERPQSDFESFLNIG 707 (715)
Q Consensus 635 ~~~~sp~------~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~ 707 (715)
+...++. ..+.+|++|+|+|..+.|..+|+++.+++++.|..++.++++++++. .||.-+..+. .++.+.|-
T Consensus 277 ~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~~l~~a~~~v~~~eI~S~~GHdaFL~e~-~~~~~~I~ 355 (362)
T d2pl5a1 277 LDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSGEGHDSFLLKN-PKQIEILK 355 (362)
T ss_dssp HHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECCCBSSGGGGSCC-HHHHHHHH
T ss_pred hhcccccccccHHHHHhhCCCCEEEEEeCcccCcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhccCH-HHHHHHHH
Confidence 1122221 23788999999999999999999999999999999999999988865 6785433333 35667777
Q ss_pred HHHH
Q 005093 708 LWFK 711 (715)
Q Consensus 708 ~wl~ 711 (715)
+||+
T Consensus 356 ~FL~ 359 (362)
T d2pl5a1 356 GFLE 359 (362)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7875
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=99.23 E-value=9.4e-11 Score=116.57 Aligned_cols=229 Identities=16% Similarity=0.185 Sum_probs=135.6
Q ss_pred CCCCcEEEEEcCCCCCCCC------ccc-hHHH---HHHHhCCcEEEEEcCCCCCCCchhhhhcCC--------CCCCcc
Q 005093 478 CSCDPLIVVLHGGPHSVSL------SSY-SKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLP--------GKVGSQ 539 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~------~~~-~~~~---~~la~~G~~vi~~d~rG~~~~g~~~~~~~~--------~~~~~~ 539 (715)
..+.++||++|+-.++... ..| ..++ ..+-...|.||++|+.|++ +|.+...... ..+...
T Consensus 36 ~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~-~gSs~p~s~~p~tg~~~g~~FP~i 114 (357)
T d2b61a1 36 DEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGC-KGTTGPSSINPQTGKPYGSQFPNI 114 (357)
T ss_dssp TTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCS-SSSSCTTSBCTTTSSBCGGGCCCC
T ss_pred CCCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCc-cccCCcCCCCCCCCCCCCcccccc
Confidence 3456899999993332211 112 2221 2344566999999999854 2222211111 123345
Q ss_pred chhhHHHHHHHHHHcCCCCCceE-EEEEeChhHHHHHHHHhhCCCceeEEEecCCcchhhh--h--------ccCCCCCC
Q 005093 540 DVNDVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--M--------VGTTDIPD 608 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~~~~d~~~i-~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~--~--------~~~~~~~~ 608 (715)
.+.|++++-..|+++- .-+++ +++|.||||+.|+..+.++|+++..+|++++...... . .-..+ +.
T Consensus 115 ti~D~v~aq~~Ll~~L--GI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~a~~s~~~~~~~~~~~~aI~~D-p~ 191 (357)
T d2b61a1 115 VVQDIVKVQKALLEHL--GISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVIND-PN 191 (357)
T ss_dssp CHHHHHHHHHHHHHHT--TCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTS-TT
T ss_pred hhHHHHHHHHHHHHHh--CcceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccccccchhHHHHHHHHHHHHHcC-CC
Confidence 6889999888888773 44677 6789999999999999999999999988876431100 0 00000 00
Q ss_pred ce------------------------------eeeccCCCCCC--CCCCCCC-hhhH---------------------HH
Q 005093 609 WC------------------------------YVESYGSKGKD--SFTESPS-VEDL---------------------TR 634 (715)
Q Consensus 609 ~~------------------------------~~~~~~~~~~~--~~~~~~~-~~~~---------------------~~ 634 (715)
|. +...++..... .+..... .+.. ..
T Consensus 192 ~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~~~~~vesyL~~~g~kf~~rfDan~yl~l~~a 271 (357)
T d2b61a1 192 FNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRA 271 (357)
T ss_dssp CGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 00 00111110000 0000000 0000 00
Q ss_pred HHhcCc-------hhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCC-CccCCCCCchHHHHHHH
Q 005093 635 FHSKSP-------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND-VHGIERPQSDFESFLNI 706 (715)
Q Consensus 635 ~~~~sp-------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~-~H~~~~~~~~~~~~~~i 706 (715)
+...++ ...+.+|++|+|+|..+.|...|+++.++.++.|...++.+++++++.. ||.-+..+ ..++.+.|
T Consensus 272 ~~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~~~~~v~~~~I~S~~GHdafL~e-~~~~~~~I 350 (357)
T d2b61a1 272 LDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYGHDAFLVD-YDQFEKRI 350 (357)
T ss_dssp HHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTGGGHHHHC-HHHHHHHH
T ss_pred hhhcccccccccHHHHHhhcCCCEEEEEeCCccccCHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCcC-HHHHHHHH
Confidence 011111 1236789999999999999999999999999999999999999999874 78533233 23555667
Q ss_pred HHHHH
Q 005093 707 GLWFK 711 (715)
Q Consensus 707 ~~wl~ 711 (715)
.+||+
T Consensus 351 ~~fL~ 355 (357)
T d2b61a1 351 RDGLA 355 (357)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77765
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.21 E-value=3.5e-09 Score=107.88 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=50.7
Q ss_pred CCCccccCCCEEEEEeeeC-------CeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 005093 336 LSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 408 (715)
Q Consensus 336 ~~~~~~~dg~~l~~~~~~~-------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~ 408 (715)
....+++|++.+++..... ....++.+|+.+++...............|++||+.++++..+.+ ..|++.|
T Consensus 270 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d--~~v~v~D 347 (373)
T d2madh_ 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT--EVLHIYD 347 (373)
T ss_pred eeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCC--CeEEEEE
Confidence 3457888888776654422 234688899999886665544443445689999998776654443 3577888
Q ss_pred ecccC
Q 005093 409 FVDKA 413 (715)
Q Consensus 409 ~~~~~ 413 (715)
+.+++
T Consensus 348 ~~tg~ 352 (373)
T d2madh_ 348 AGAGD 352 (373)
T ss_pred CCCCC
Confidence 77654
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=99.21 E-value=7e-12 Score=119.06 Aligned_cols=201 Identities=9% Similarity=-0.024 Sum_probs=111.1
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
.++.+.||++||.+.. ...|..++..|+ +|.|+++|++| ++. .++++.++|..+ .
T Consensus 14 ~~~~~~l~~lhg~~g~--~~~~~~la~~L~--~~~v~~~~~~g---~~~-------------~a~~~~~~i~~~-----~ 68 (230)
T d1jmkc_ 14 QDQEQIIFAFPPVLGY--GLMYQNLSSRLP--SYKLCAFDFIE---EED-------------RLDRYADLIQKL-----Q 68 (230)
T ss_dssp TTCSEEEEEECCTTCC--GGGGHHHHHHCT--TEEEEEECCCC---STT-------------HHHHHHHHHHHH-----C
T ss_pred CCCCCeEEEEcCCCCC--HHHHHHHHHHCC--CCEEeccCcCC---HHH-------------HHHHHHHHHHHh-----C
Confidence 4567899999997665 567888888884 79999999997 321 245555555443 2
Q ss_pred CCceEEEEEeChhHHHHHHHHhhCCCc---eeEEEecCCcchhhhhccCCCCCC--ceeeeccCCCCCCCCCCCCChhhH
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQAPDK---FVAAAARNPLCNLALMVGTTDIPD--WCYVESYGSKGKDSFTESPSVEDL 632 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~~p~~---~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 632 (715)
...++.|+||||||.+++.+|.++|++ +..++...+............... ......... ...........
T Consensus 69 ~~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 144 (230)
T d1jmkc_ 69 PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNR----DNEALNSEAVK 144 (230)
T ss_dssp CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTT----TCSGGGSHHHH
T ss_pred CCCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccccCccchhhhhhhhhhhhhhhhhhccc----cccccccHHHH
Confidence 346799999999999999998876543 444444443221100000000000 000000000 00000000100
Q ss_pred HH--------HHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCC-chHHHH
Q 005093 633 TR--------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ-SDFESF 703 (715)
Q Consensus 633 ~~--------~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~-~~~~~~ 703 (715)
.. +..........++++|+++++|++|..++.... ... ......++++.+++ +|.....+ ...++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~i~~p~l~i~g~~D~~~~~~~~-~w~---~~~~~~~~~~~i~g-~H~~ml~~~~~~~va 219 (230)
T d1jmkc_ 145 HGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPEWLA-SWE---EATTGAYRMKRGFG-THAEMLQGETLDRNA 219 (230)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCTTEE-CSG---GGBSSCEEEEECSS-CGGGTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccccCcceeeeecCCcccchhHH-HHH---HhccCCcEEEEEcC-CChhhcCCccHHHHH
Confidence 00 011111223457889999999999998875432 111 11234678888985 89754332 234566
Q ss_pred HHHHHHHHH
Q 005093 704 LNIGLWFKK 712 (715)
Q Consensus 704 ~~i~~wl~~ 712 (715)
+.|.+||++
T Consensus 220 ~~I~~~L~~ 228 (230)
T d1jmkc_ 220 GILLEFLNT 228 (230)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 667777764
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.20 E-value=1e-09 Score=109.07 Aligned_cols=239 Identities=13% Similarity=0.062 Sum_probs=140.7
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEe-cCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
.....++||+|+.|||.... .++... ..+....+.. .... +..+.|||||++|+....
T Consensus 19 ~~~~~a~~~~g~~l~~~~~~-----~v~i~~~~~~~~~~~~~~H~~~----------v~~~~~sp~g~~latg~~----- 78 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNGT-----SVYTVPVGSLTDTEIYTEHSHQ----------TTVAKTSPSGYYCASGDV----- 78 (311)
T ss_dssp CCCCCEECTTSSEEEEEETT-----EEEEEETTCSSCCEEECCCSSC----------EEEEEECTTSSEEEEEET-----
T ss_pred CeEEEEEcCCCCEEEEEeCC-----EEEEEECCCCceeEEEcCCCCC----------EEEEEEeCCCCeEecccc-----
Confidence 34567899999999997433 344433 4444444432 2222 289999999999876532
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE---eecCCCCCCccceEEEecCCCCC
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~---~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
...|.+||+.+++.. .+ ......+..+.|+|||+.
T Consensus 79 ---------------------------------------dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v~~s~d~~~- 116 (311)
T d1nr0a1 79 ---------------------------------------HGNVRIWDTTQTTHILKTTI--PVFSGPVKDISWDSESKR- 116 (311)
T ss_dssp ---------------------------------------TSEEEEEESSSTTCCEEEEE--ECSSSCEEEEEECTTSCE-
T ss_pred ---------------------------------------CceEeeeeeecccccccccc--ccccCccccccccccccc-
Confidence 266999999877532 23 122345778999999997
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~ 278 (715)
|+..+.. ....+.+++++ .+.....+..+...+....|+|+|+.++.+
T Consensus 117 ---l~~~~~~-------------~~~~~~v~~~~----------------~~~~~~~l~~h~~~v~~v~~~~~~~~~l~s 164 (311)
T d1nr0a1 117 ---IAAVGEG-------------RERFGHVFLFD----------------TGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164 (311)
T ss_dssp ---EEEEECC-------------SSCSEEEEETT----------------TCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred ---ccccccc-------------ccccccccccc----------------cccccccccccccccccccccccceeeecc
Confidence 7665521 11124445541 233445566666678889999999975544
Q ss_pred ecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 358 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 358 (715)
...+ ..|.++|+.+++....-.. +...+..+.|+|+++.++. ...++ .
T Consensus 165 gs~d----------~~i~i~d~~~~~~~~~~~~-------------------~~~~i~~v~~~p~~~~l~~-~~~d~--~ 212 (311)
T d1nr0a1 165 GSDD----------NTVAIFEGPPFKFKSTFGE-------------------HTKFVHSVRYNPDGSLFAS-TGGDG--T 212 (311)
T ss_dssp EETT----------SCEEEEETTTBEEEEEECC-------------------CSSCEEEEEECTTSSEEEE-EETTS--C
T ss_pred cccc----------ccccccccccccccccccc-------------------ccccccccccCcccccccc-ccccc--c
Confidence 4332 2478888876443111000 1113446679999985544 44333 4
Q ss_pred EEEEECCCCcEEEecCCC--------CCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 359 IISVNVSSGELLRITPAE--------SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 359 l~~~d~~tg~~~~l~~~~--------~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
+..+|+.++......... ..+....|+++++.|+... .+. .|.+.++.++
T Consensus 213 v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs--~Dg--~v~iwd~~t~ 270 (311)
T d1nr0a1 213 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS--ADK--TIKIWNVATL 270 (311)
T ss_dssp EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE--TTS--EEEEEETTTT
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCEEEEEe--CCC--eEEEEECCCC
Confidence 556687777665543322 1233356788887665432 222 4666665443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.19 E-value=2.2e-09 Score=109.59 Aligned_cols=253 Identities=9% Similarity=0.048 Sum_probs=138.6
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
.+...+|||||+.||+....+ ...+| .+++...+..+. +..+ .+..+.|||||++|+-.+.
T Consensus 9 pIt~~~~s~dg~~la~~~~~~-----~i~iw~~~~~~~~~~~~l~-gH~~------~V~~l~fsp~~~~l~s~s~----- 71 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNH-----EVHIYEKSGNKWVQVHELK-EHNG------QVTGVDWAPDSNRIVTCGT----- 71 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSS-----EEEEEEEETTEEEEEEEEE-CCSS------CEEEEEEETTTTEEEEEET-----
T ss_pred CeEEEEECCCCCEEEEEeCCC-----EEEEEECCCCCEEEEEEec-CCCC------CEEEEEECCCCCEEEEEEC-----
Confidence 378889999999999875432 33455 445444443332 1112 2379999999998876532
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec-CCCCCCccceEEEecCCCCCcc
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~-~~~~~~~~~~~~~spdg~~~~~ 200 (715)
...|++||+++++..... -......+..+.|+|||+.
T Consensus 72 ---------------------------------------D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~--- 109 (371)
T d1k8kc_ 72 ---------------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK--- 109 (371)
T ss_dssp ---------------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE---
T ss_pred ---------------------------------------CCeEEEEeeccccccccccccccccccccccccccccc---
Confidence 156999999887654331 0223345778999999997
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc---eecCCCCccccceeEcCCCCeEEE
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~~~~spdg~~l~~ 277 (715)
|+.... + +.-.+|.++. ..... .........+....|+|||+.|+.
T Consensus 110 -l~~~s~-d------------~~i~i~~~~~-----------------~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s 158 (371)
T d1k8kc_ 110 -FAVGSG-S------------RVISICYFEQ-----------------ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 158 (371)
T ss_dssp -EEEEET-T------------SSEEEEEEET-----------------TTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred -ceeecc-c------------Ccceeeeeec-----------------ccccccccccccccccccccccccccccceec
Confidence 766541 1 1124555542 11111 112223345678999999999987
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCCcccce--eeee---eceecCCCCCccccccCCCCCCccccCCCEEEEEee
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI--VDVI---PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 352 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~--~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~ 352 (715)
.+.+. .+.++++............ .... ....... .+...+..++|+|||+.|+.. .
T Consensus 159 ~s~D~-----------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~g~~l~s~-~ 220 (371)
T d1k8kc_ 159 GSCDF-----------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS------SSCGWVHGVCFSANGSRVAWV-S 220 (371)
T ss_dssp EETTS-----------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC------CCSSCEEEEEECSSSSEEEEE-E
T ss_pred cccCc-----------EEEEEeeccCccccccccccccccccceeeeeecc------CccCcEEEEEeeccccccccc-c
Confidence 66553 2556665443321110000 0000 0000000 011234567899999866544 3
Q ss_pred eCCeeEEEEEECCCCcEEE-ecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 005093 353 WGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 409 (715)
Q Consensus 353 ~~~~~~l~~~d~~tg~~~~-l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~ 409 (715)
.++ .|..+|+.+++... +......+....|++++. ++... .+.-..++..+.
T Consensus 221 ~d~--~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~-~la~g--~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 221 HDS--TVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAG--HDCFPVLFTYDS 273 (371)
T ss_dssp TTT--EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE-EEEEE--TTSSCEEEEEET
T ss_pred cCC--cceEEeeecccceeeeecccccceeeeecCCCC-EEEEE--cCCceEEEEeeC
Confidence 343 56667887766544 333333444467888764 44333 344445665553
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=4e-10 Score=113.56 Aligned_cols=261 Identities=13% Similarity=0.067 Sum_probs=143.1
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-c-CCccEEEEecCcccccccc
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-S-QSQLEKEFHVPQTVHGSVY 94 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 94 (715)
.|.++|+........ +.......+.+.+...+|||||++|+.....+ ...+| . .........+....
T Consensus 73 ~V~iWd~~~~~~~~~-~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~----- 141 (337)
T d1gxra_ 73 CVKVWDISHPGNKSP-VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-----TLSIWDLAAPTPRIKAELTSSA----- 141 (337)
T ss_dssp EEEEEETTSTTCCSC-SEEEECSCTTSBEEEEEECTTSSEEEEEESSS-----EEEEEECCCC--EEEEEEECSS-----
T ss_pred EEEEEEccCCcccce-eEEeeecCCCCcEEEEEEcCCCCEEEEeeccc-----cccccccccccccccccccccc-----
Confidence 456666766543211 11111222335688999999999998765542 34455 2 22222222211111
Q ss_pred CCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce
Q 005093 95 ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV 174 (715)
Q Consensus 95 ~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 174 (715)
..+..+.|+||+..|+......... .+....................+.|.++............+.+||+.+++.
T Consensus 142 --~~v~~~~~~~~~~~l~s~~~d~~i~--~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~ 217 (337)
T d1gxra_ 142 --PACYALAISPDSKVCFSCCSDGNIA--VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217 (337)
T ss_dssp --SCEEEEEECTTSSEEEEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred --ccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 1125788999999887665433221 111111110000011111222333444421222222347899999988876
Q ss_pred EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce
Q 005093 175 QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV 254 (715)
Q Consensus 175 ~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (715)
... ......+..++|+|+++. ++... ....|..+|+ .++...
T Consensus 218 ~~~--~~~~~~i~~l~~~~~~~~----l~~~~---------------~d~~i~i~d~-----------------~~~~~~ 259 (337)
T d1gxra_ 218 LQQ--HDFTSQIFSLGYCPTGEW----LAVGM---------------ESSNVEVLHV-----------------NKPDKY 259 (337)
T ss_dssp EEE--EECSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET-----------------TSSCEE
T ss_pred ecc--cccccceEEEEEcccccc----cceec---------------cccccccccc-----------------cccccc
Confidence 544 233345678899999987 66543 2236888886 556666
Q ss_pred ecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCC
Q 005093 255 NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 334 (715)
Q Consensus 255 ~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~ 334 (715)
........+....|||||+.|+-.+.+ ..|+++|+.+++...... +...
T Consensus 260 ~~~~~~~~i~~v~~s~~g~~l~s~s~D-----------g~i~iwd~~~~~~~~~~~--------------------~~~~ 308 (337)
T d1gxra_ 260 QLHLHESCVLSLKFAYCGKWFVSTGKD-----------NLLNAWRTPYGASIFQSK--------------------ESSS 308 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCEEEEEE--------------------CSSC
T ss_pred cccccccccceEEECCCCCEEEEEeCC-----------CeEEEEECCCCCEEEEcc--------------------CCCC
Confidence 666667778899999999988765544 248888887765421110 0113
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEE
Q 005093 335 ILSNPWLSDGCTMLLSSIWGSSQVIISV 362 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~~~~~l~~~ 362 (715)
+..+.|+||++.| ++...++.-+||.+
T Consensus 309 v~~~~~s~d~~~l-~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 309 VLSCDISVDDKYI-VTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred EEEEEEeCCCCEE-EEEeCCCeEEEEEE
Confidence 4466799999855 45555565666643
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.15 E-value=2.1e-09 Score=109.65 Aligned_cols=280 Identities=13% Similarity=-0.012 Sum_probs=156.3
Q ss_pred cceEEeeCCCCceEEEEec-CCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 005093 44 GASAVVPSPSGSKLLVVRN-PENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 121 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 121 (715)
.....+.+|||++...... ...+..++|.++ .+++....+..... ..+.|||||+.|++.......
T Consensus 21 ~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~-----------~~~a~spDg~~i~~~~~~~~~- 88 (368)
T d1mdah_ 21 SSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-----------SLAVAGHSGSDFALASTSFAR- 88 (368)
T ss_dssp CCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-----------CEEEECTTSSCEEEEEEEETT-
T ss_pred CccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC-----------CcceECCCCCEEEEEcccCcc-
Confidence 3455567889987654432 222556789888 77777666654332 478999999999997543210
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCC------CCCccceEEEecCC
Q 005093 122 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP------KSLSVGQVVWAPLN 195 (715)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~------~~~~~~~~~~spdg 195 (715)
.........|.+||..+++.......+ .......+.|||||
T Consensus 89 ---------------------------------~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG 135 (368)
T d1mdah_ 89 ---------------------------------SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135 (368)
T ss_dssp ---------------------------------TTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred ---------------------------------ccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCC
Confidence 001113467999999998865431001 11134468999999
Q ss_pred CCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCC--------Ccccccee
Q 005093 196 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--------ISSAFFPR 267 (715)
Q Consensus 196 ~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--------~~~~~~~~ 267 (715)
+. |++... ....|+++|+ ++++....... .+......
T Consensus 136 k~----l~va~~--------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~ 180 (368)
T d1mdah_ 136 AC----LLFFLF--------------GSSAAAGLSV-----------------PGASDDQLTKSASCFHIHPGAAATHYL 180 (368)
T ss_dssp SC----EEEEEC--------------SSSCEEEEEE-----------------TTTEEEEEEECSSCCCCEEEETTEEEC
T ss_pred CE----EEEEeC--------------CCCeEEEEEC-----------------CCCcEeEEeeccCcceEccCCCceEEE
Confidence 99 887642 1236888887 55543332111 11234467
Q ss_pred EcCCCCeEEEEecCCCCCCC--------C-----------------ccccceeEeeecCCCCCCCcccceeeeeeceecC
Q 005093 268 FSPDGKFLVFLSAKSSVDSG--------A-----------------HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA 322 (715)
Q Consensus 268 ~spdg~~l~~~~~~~~~~~g--------~-----------------~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~ 322 (715)
+++||+.+++.......... . .....+++++++..+....+. .....
T Consensus 181 ~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~ 252 (368)
T d1mdah_ 181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKA--------AIDGN 252 (368)
T ss_dssp CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEEC--------CCCSS
T ss_pred EcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEe--------ecccc
Confidence 78999877766543221100 0 000112334443332221110 00000
Q ss_pred CCCCccccc-cCCCCCCccccCCCEEEEEeeeC------CeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEE
Q 005093 323 EGDCFPGLY-SSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 323 ~~~~~~g~~-~~~~~~~~~~~dg~~l~~~~~~~------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~ 395 (715)
........+ ..+...+.++++++.+|+..... ...+|+.+|.++++...............|++||+.++++.
T Consensus 253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s 332 (368)
T d1mdah_ 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEE
Confidence 000000001 11334567889999887766543 24679999999998665443333233468999998776666
Q ss_pred eCCCCCCeEEEEeecccC
Q 005093 396 SSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 396 ~~~~~p~~l~~~~~~~~~ 413 (715)
...+ ..|+++|..+++
T Consensus 333 ~~~~--~~v~v~D~~tgk 348 (368)
T d1mdah_ 333 SAGT--EVLDIYDAASDQ 348 (368)
T ss_dssp ETTT--TEEEEEESSSCE
T ss_pred eCCC--CeEEEEECCCCC
Confidence 5433 368888977664
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.14 E-value=9.4e-12 Score=122.05 Aligned_cols=219 Identities=11% Similarity=0.074 Sum_probs=121.6
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHH-HHHHHHcC
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMG 555 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~-i~~l~~~~ 555 (715)
.....|.++++||.........|..++..|.. ++.|+++|++| +|.+... ........++++.+. ++.+...
T Consensus 56 ~~~~~~~l~c~~~~~~~g~~~~y~~la~~L~~-~~~V~al~~pG---~~~~~~~--~~~~~~~s~~~~a~~~~~~i~~~- 128 (283)
T d2h7xa1 56 RAEGRAVLVGCTGTAANGGPHEFLRLSTSFQE-ERDFLAVPLPG---YGTGTGT--GTALLPADLDTALDAQARAILRA- 128 (283)
T ss_dssp --CCCCEEEEECCCCTTCSTTTTHHHHHTTTT-TCCEEEECCTT---CCBC-----CBCCEESSHHHHHHHHHHHHHHH-
T ss_pred CCCCCceEEEeCCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCC---CCCCCCC--ccccccCCHHHHHHHHHHHHHHh-
Confidence 44567889999984322224567778888754 68999999999 5443211 111222345666554 3444443
Q ss_pred CCCCceEEEEEeChhHHHHHHHHhhC----CCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCCh--
Q 005093 556 LANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV-- 629 (715)
Q Consensus 556 ~~d~~~i~l~G~S~GG~~a~~~a~~~----p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 629 (715)
....++.|+||||||.+++.+|.+. +..+.+++++.+........... .... ....... .........
T Consensus 129 -~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~~~~-~~~~-~~~~~~~---~~~~~~~~~~l 202 (283)
T d2h7xa1 129 -AGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEV-WSRQ-LGEGLFA---GELEPMSDARL 202 (283)
T ss_dssp -HTTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHHHHH-THHH-HHHHHHH---TCSSCCCHHHH
T ss_pred -cCCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccchhh-hhhh-hHHHhhc---ccccccccHHH
Confidence 2346899999999999999888754 45788888877643211000000 0000 0000000 000000000
Q ss_pred hhHHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCccCCCCCchHHHHHHHHHH
Q 005093 630 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 709 (715)
Q Consensus 630 ~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~w 709 (715)
.....+...........+++|+++++|++|..++......+.+.+ ...++++.+++ +|.....+....+.+.|.+|
T Consensus 203 ~a~~~~~~~~~~~~~~~~~~Pvl~i~g~~d~~~~~~~~~~w~~~~---~~~~~~~~v~G-~H~~ml~e~~~~vA~~i~~~ 278 (283)
T d2h7xa1 203 LAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDWRAHW---DLPHTVADVPG-DHFTMMRDHAPAVAEAVLSW 278 (283)
T ss_dssp HHHHHHHHHHHSCCCCCCCSCEEEEEESSCSSCCCGGGCCCSCCC---SSCSEEEEESS-CTTHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccCCCeEEEEeCCCCCCCHHHHHHHHHhC---CCCcEEEEEcC-CCcccccCCHHHHHHHHHHH
Confidence 001111111111234578899999999999999877654332221 23467889987 67533334556777889999
Q ss_pred HHH
Q 005093 710 FKK 712 (715)
Q Consensus 710 l~~ 712 (715)
|+.
T Consensus 279 L~~ 281 (283)
T d2h7xa1 279 LDA 281 (283)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.14 E-value=2e-11 Score=119.65 Aligned_cols=126 Identities=17% Similarity=0.107 Sum_probs=82.7
Q ss_pred CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEE-ecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCC---hh
Q 005093 555 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA-ARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS---VE 630 (715)
Q Consensus 555 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 630 (715)
..+|++||+|+|+|+||++++.++..+|++|++++ .+++..... . .. ........ ...+. ..
T Consensus 6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~c-a---~~---~~~~~~~~-------~~~~~~~~~~ 71 (318)
T d2d81a1 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDC-A---RN---QYYTSCMY-------NGYPSITTPT 71 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTT-T---SS---SCGGGGST-------TCCCCCHHHH
T ss_pred cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhh-h---cc---cchHHHhh-------cCCCCCcChh
Confidence 35899999999999999999999999999997433 333321100 0 00 00000000 00111 11
Q ss_pred h-HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCC--cEEEEEeCCCCccCC
Q 005093 631 D-LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV--ETKVIVFPNDVHGIE 694 (715)
Q Consensus 631 ~-~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~--~~~~~~~~~~~H~~~ 694 (715)
. .+.+...++.........|+||+||++|.+||+.++.++++++++.+. +++++..++++|.|.
T Consensus 72 ~~~~~~~~~~i~~~~~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~~~~v~yv~~~gagH~fp 138 (318)
T d2d81a1 72 ANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFP 138 (318)
T ss_dssp HHHHHHBTTTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEE
T ss_pred HHHHHHhhcCCcchhccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcCCCceEEEEeCCCCCCCC
Confidence 1 222222233333344568999999999999999999999999987644 688999999999874
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=99.09 E-value=2.2e-10 Score=111.90 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=78.0
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 557 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 557 (715)
..+.| ||++||.+.......|..+...|+++||.|+.+|++| +|... .....+++.++|+++.+..
T Consensus 29 ~~~~P-VvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g---~g~~d--------~~~sae~la~~i~~v~~~~-- 94 (317)
T d1tcaa_ 29 SVSKP-ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPP---FMLND--------TQVNTEYMVNAITALYAGS-- 94 (317)
T ss_dssp SCSSE-EEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTT---TTCSC--------HHHHHHHHHHHHHHHHHHT--
T ss_pred CCCCc-EEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCC---CCCCc--------hHhHHHHHHHHHHHHHHhc--
Confidence 34455 6789995544222235567889999999999999998 33221 1223678888899988873
Q ss_pred CCceEEEEEeChhHHHHHHHHhhCC---CceeEEEecCCcch
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 596 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~~ 596 (715)
..++|.|+||||||.++.+++..+| ++++.+|.+++...
T Consensus 95 g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~~ 136 (317)
T d1tcaa_ 95 GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 136 (317)
T ss_dssp TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCCC
Confidence 3578999999999999999999887 46889998888653
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=99.08 E-value=8e-10 Score=110.58 Aligned_cols=115 Identities=24% Similarity=0.322 Sum_probs=78.1
Q ss_pred CCCCcEEEEEcCCCCCCCCccch-HHH---HHHHhCCcEEEEEcCCCCCCCchhhhhcC-C---------CCCCccchhh
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYS-KSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSL-P---------GKVGSQDVND 543 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~-~~~---~~la~~G~~vi~~d~rG~~~~g~~~~~~~-~---------~~~~~~~~~d 543 (715)
..+.++||++|+-..+.....|. .++ ..+--..|-||++|..|++ +|.+..... + .++....+.|
T Consensus 41 ~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~-~gst~p~s~~p~~~~~~~yg~~FP~~ti~D 119 (376)
T d2vata1 41 VSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSP-FGSAGPCSPDPDAEGQRPYGAKFPRTTIRD 119 (376)
T ss_dssp TTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCS-SSSSSTTSBCTTTC--CBCGGGCCCCCHHH
T ss_pred CCCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCC-cCCCCCCCCCcccccCCcccccCCcchhHH
Confidence 35678999999954443333332 121 2344567999999999854 332221111 1 1233446889
Q ss_pred HHHHHHHHHHcCCCCCceE-EEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 544 VLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 544 ~~~~i~~l~~~~~~d~~~i-~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
++++-..|++.- .-+++ +|+|.||||+.|+..|..+|+++..+|.+++..
T Consensus 120 ~v~aq~~ll~~L--GI~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~~ 170 (376)
T d2vata1 120 DVRIHRQVLDRL--GVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSC 170 (376)
T ss_dssp HHHHHHHHHHHH--TCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCS
T ss_pred HHHHHHHHHHHh--CcceEEEeecccHHHHHHHHHHHhchHHHhhhccccccc
Confidence 998887777763 34666 688999999999999999999999998887644
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.06 E-value=1.9e-08 Score=101.40 Aligned_cols=89 Identities=15% Similarity=0.015 Sum_probs=55.7
Q ss_pred ccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccc
Q 005093 263 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 341 (715)
...+.++|||+.+++......... .......|+++|..+++... +..+ ..+..+.|+
T Consensus 251 ~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~v~v~d~~t~~~~~~~~~~---------------------~~~~~~a~s 308 (355)
T d2bbkh_ 251 WQQVAYHRALDRIYLLVDQRDEWR-HKTASRFVVVLDAKTGERLAKFEMG---------------------HEIDSINVS 308 (355)
T ss_dssp SSCEEEETTTTEEEEEEEECCTTC-TTSCEEEEEEEETTTCCEEEEEEEE---------------------EEECEEEEC
T ss_pred eEEEEEeCCCCeEEEEeccCCcee-ecCCCCeEEEEeCCCCcEEEEecCC---------------------CCEEEEEEc
Confidence 345889999998887765532111 11223568899988765421 1100 023456799
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 005093 342 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 342 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
|||+.+++.+. .....|+.+|+++|+..+...
T Consensus 309 pDG~~~l~v~~-~~d~~i~v~D~~tg~~~~~i~ 340 (355)
T d2bbkh_ 309 QDEKPLLYALS-TGDKTLYIHDAESGEELRSVN 340 (355)
T ss_dssp CSSSCEEEEEE-TTTTEEEEEETTTCCEEEEEC
T ss_pred CCCCeEEEEEE-CCCCEEEEEECCCCCEEEEEe
Confidence 99997666554 334578999999999765443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.05 E-value=1.3e-08 Score=99.83 Aligned_cols=231 Identities=14% Similarity=0.110 Sum_probs=142.6
Q ss_pred EEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCC
Q 005093 57 LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 135 (715)
Q Consensus 57 la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 135 (715)
-||+.+.+++ .+..++ .+++..+.+.+.... .+++|||||++|+.....
T Consensus 3 ~~yV~~~~~~--~v~v~D~~t~~~~~~i~~g~~p----------~~va~spdG~~l~v~~~~------------------ 52 (301)
T d1l0qa2 3 FAYIANSESD--NISVIDVTSNKVTATIPVGSNP----------MGAVISPDGTKVYVANAH------------------ 52 (301)
T ss_dssp EEEEEETTTT--EEEEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEEGG------------------
T ss_pred EEEEEECCCC--EEEEEECCCCeEEEEEECCCCc----------eEEEEeCCCCEEEEEECC------------------
Confidence 4677655322 455555 666666666554443 689999999999764321
Q ss_pred CcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceee
Q 005093 136 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 215 (715)
Q Consensus 136 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g 215 (715)
...|.+||+++++.... .+.......+.|++||+. ++....
T Consensus 53 -------------------------~~~i~v~d~~t~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~-------- 93 (301)
T d1l0qa2 53 -------------------------SNDVSIIDTATNNVIAT--VPAGSSPQGVAVSPDGKQ----VYVTNM-------- 93 (301)
T ss_dssp -------------------------GTEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSE----EEEEET--------
T ss_pred -------------------------CCEEEEEECCCCceeee--eecccccccccccccccc----cccccc--------
Confidence 26799999999886554 233345678899999997 666542
Q ss_pred eeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCcccccee
Q 005093 216 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 295 (715)
Q Consensus 216 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l 295 (715)
....+..++. .+++...............|+|||+.+++....+ ..+
T Consensus 94 ------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~----------~~~ 140 (301)
T d1l0qa2 94 ------ASSTLSVIDT-----------------TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD----------KTV 140 (301)
T ss_dssp ------TTTEEEEEET-----------------TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT----------TEE
T ss_pred ------ccceeeeccc-----------------ccceeeeeccccccceEEEeecCCCeeeeeeccc----------cce
Confidence 2235777775 5555444444445567789999999988776553 246
Q ss_pred EeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC
Q 005093 296 HRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 375 (715)
Q Consensus 296 ~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~ 375 (715)
.+++..+.......... .....+.+++|++.+++..... ..+...+....+.......
T Consensus 141 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 198 (301)
T d1l0qa2 141 SVINTVTKAVINTVSVG--------------------RSPKGIAVTPDGTKVYVANFDS--MSISVIDTVTNSVIDTVKV 198 (301)
T ss_dssp EEEETTTTEEEEEEECC--------------------SSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEEC
T ss_pred eeeeccccceeeecccC--------------------CCceEEEeeccccceeeecccc--cccccccccceeeeecccc
Confidence 67776664431110000 0223456889998777654433 3455566666666655444
Q ss_pred CCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 376 ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 376 ~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
........++++++.+++...+. ....|++.|+.++
T Consensus 199 ~~~~~~~~~~~~g~~~~v~~~~~-~~~~v~v~D~~t~ 234 (301)
T d1l0qa2 199 EAAPSGIAVNPEGTKAYVTNVDK-YFNTVSMIDTGTN 234 (301)
T ss_dssp SSEEEEEEECTTSSEEEEEEECS-SCCEEEEEETTTT
T ss_pred cCCcceeeccccccccccccccc-eeeeeeeeecCCC
Confidence 33233456888888887665443 3345777776544
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.04 E-value=1.3e-07 Score=97.97 Aligned_cols=275 Identities=13% Similarity=0.094 Sum_probs=156.4
Q ss_pred EEeeCCCCceEEEEecCCC-CCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 47 AVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 47 ~~~~Spdg~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
...+||||+++||..+.++ +...++.++ .+|+..... ++... +..+.|++|++.|+|...........
T Consensus 129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~~---------~~~~~W~~D~~~~~Y~~~~~~~~~~~ 198 (430)
T d1qfma1 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVK---------FSCMAWTHDGKGMFYNAYPQQDGKSD 198 (430)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEEC---------SCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred ceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-ccccc---------ccceEEcCCCCEEEEEEeccccCccc
Confidence 4578999999999877654 455677777 666544322 11111 15789999999999986543211100
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE--eecC-CCCCCccceEEEecCCCCCccE
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKG-IPKSLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--~l~~-~~~~~~~~~~~~spdg~~~~~~ 201 (715)
+..-.......++++.+.++... .+-. ............|+||+.
T Consensus 199 ----------------------------~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~---- 246 (430)
T d1qfma1 199 ----------------------------GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY---- 246 (430)
T ss_dssp ----------------------------SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE----
T ss_pred ----------------------------ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcce----
Confidence 00000012367999988776432 2211 111122334567889987
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC------ceecCCCCccccceeEcCCCCeE
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP------VVNLTESISSAFFPRFSPDGKFL 275 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~lt~~~~~~~~~~~spdg~~l 275 (715)
++....... .....+|.+++.. .... ...+.......... ...+|..+
T Consensus 247 l~i~~~~~~----------~~~~~~~~~d~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 300 (430)
T d1qfma1 247 VLLSIREGC----------DPVNRLWYCDLQQ---------------ESNGITGILKWVKLIDNFEGEYDY-VTNEGTVF 300 (430)
T ss_dssp EEEEEECSS----------SSCCEEEEEEGGG---------------SSSSSCSSCCCEEEECSSSSCEEE-EEEETTEE
T ss_pred eeEEeeccC----------CccEEEEEeeCCC---------------cccccccccceeEeecccccceEE-EecCCcee
Confidence 665543221 1234688888620 0111 11222211111222 23366777
Q ss_pred EEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCC
Q 005093 276 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 355 (715)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~ 355 (715)
++.++.. .....|..++++...... ... ++...... ...-..+..++.|++....++
T Consensus 301 ~~~Tn~~-------a~~~~L~~~~~~~~~~~~----w~~---vi~~~~~~---------~~~~~~~~~~~~lvl~~~~~~ 357 (430)
T d1qfma1 301 TFKTNRH-------SPNYRLINIDFTDPEESK----WKV---LVPEHEKD---------VLEWVACVRSNFLVLCYLHDV 357 (430)
T ss_dssp EEEECTT-------CTTCEEEEEETTBCCGGG----CEE---EECCCSSC---------EEEEEEEETTTEEEEEEEETT
T ss_pred ecccCcc-------cccceeEEecCCCCcccc----ceE---EecccCcc---------eeeeEEEEECCEEEEEEEcCC
Confidence 7777764 335679999887643211 111 11111100 000012223456878878889
Q ss_pred eeEEEEEECCCCcEEEecCCCCCceeEEEe--ecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 356 SQVIISVNVSSGELLRITPAESNFSWSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 356 ~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s--~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
..+|..+++.+++...+..... .+...++ .+++.+++..+++.+|+.+|.+|+.+++
T Consensus 358 ~~~l~v~~~~~~~~~~~~~~~~-~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 358 KNTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EEEEEEEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EeEEEEEECCCCcEEEecCCCC-ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 9999999999999888865443 2333444 4567899999999999999999988765
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.04 E-value=1e-08 Score=100.65 Aligned_cols=239 Identities=15% Similarity=0.160 Sum_probs=126.8
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
+.+...+|||||++||-...++ ...+| .+++..+.. ...... .+..+.|+|||+.++.. .+...
T Consensus 13 ~~V~~l~~s~dg~~l~s~s~Dg-----~v~vWd~~~~~~~~~~--~~~h~~------~v~~v~~~~~g~~~~~~-~d~~v 78 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSADAEG-----HINSWDISTGISNRVF--PDVHAT------MITGIKTTSKGDLFTVS-WDDHL 78 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEECS--SCSCSS------CEEEEEECTTSCEEEEE-TTTEE
T ss_pred CCcEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEEE--cCCCCC------cEEEEEeeccceeeccc-ceeeE
Confidence 6689999999999988654432 34566 344433322 112111 23789999999754433 22211
Q ss_pred CCCCccCCCCCCCCC---CcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 121 SKPTFSLGSTKGGSS---DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
..+.......... ............+.++ |..+.......+.+|+.. +...+ ........++|+||++.
T Consensus 79 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~~~~~~~~~i~~~~~~--~~~~~---~~~~~~~~~~~s~~~~~ 150 (299)
T d1nr0a2 79 --KVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD-GDIAVAACYKHIAIYSHG--KLTEV---PISYNSSCVALSNDKQF 150 (299)
T ss_dssp --EEECSSSSSSCTTSCCEEECSSCEEEEEECTT-SSCEEEEESSEEEEEETT--EEEEE---ECSSCEEEEEECTTSCE
T ss_pred --EEeccCCccccccccccccccccccccccccc-cccccccccccccccccc--ccccc---ccccccccccccccccc
Confidence 1121111110000 0011111122344444 344444344677788743 33333 12234567899999986
Q ss_pred CccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCcee--cCCCCccccceeEcCCCCeE
Q 005093 198 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFL 275 (715)
Q Consensus 198 ~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--lt~~~~~~~~~~~spdg~~l 275 (715)
|+... .+..|..+|+ .+++... .......+...+|+|+|+.|
T Consensus 151 ----l~~g~---------------~dg~i~~~d~-----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 194 (299)
T d1nr0a2 151 ----VAVGG---------------QDSKVHVYKL-----------------SGASVSEVKTIVHPAEITSVAFSNNGAFL 194 (299)
T ss_dssp ----EEEEE---------------TTSEEEEEEE-----------------ETTEEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred ----ccccc---------------cccccccccc-----------------ccccccccccccccccccccccccccccc
Confidence 66543 2236777776 4444332 23345567889999999988
Q ss_pred EEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCC
Q 005093 276 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 355 (715)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~ 355 (715)
+..+.+. .|+++|+.++......... . .+...+..++|+|+++.|+ +...++
T Consensus 195 ~~~~~d~-----------~i~~~~~~~~~~~~~~~~~---------------~-~h~~~v~~l~~s~~~~~l~-sgs~dg 246 (299)
T d1nr0a2 195 VATDQSR-----------KVIPYSVANNFELAHTNSW---------------T-FHTAKVACVSWSPDNVRLA-TGSLDN 246 (299)
T ss_dssp EEEETTS-----------CEEEEEGGGTTEESCCCCC---------------C-CCSSCEEEEEECTTSSEEE-EEETTS
T ss_pred ccccccc-----------ccccccccccccccccccc---------------c-ccccccccccccccccceE-EEcCCC
Confidence 7666542 4888887664432111100 0 0112345567999998554 444444
Q ss_pred eeEEEEEECCCCcE
Q 005093 356 SQVIISVNVSSGEL 369 (715)
Q Consensus 356 ~~~l~~~d~~tg~~ 369 (715)
.+..+|+.++..
T Consensus 247 --~i~iwd~~~~~~ 258 (299)
T d1nr0a2 247 --SVIVWNMNKPSD 258 (299)
T ss_dssp --CEEEEETTCTTS
T ss_pred --EEEEEECCCCCc
Confidence 455567766543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.04 E-value=1.4e-08 Score=101.24 Aligned_cols=290 Identities=10% Similarity=-0.002 Sum_probs=149.3
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGS 92 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 92 (715)
....|.++|+.+... . ..-+....-.....+++||||++|+..... ...+..++ .+++.............
T Consensus 9 ~d~~v~v~D~~s~~~--~--~~i~~~~~~~~~~~i~~spDg~~l~v~~~~---~~~v~v~D~~t~~~~~~~~~~~~~~~- 80 (337)
T d1pbyb_ 9 RPDKLVVIDTEKMAV--D--KVITIADAGPTPMVPMVAPGGRIAYATVNK---SESLVKIDLVTGETLGRIDLSTPEER- 80 (337)
T ss_dssp TTTEEEEEETTTTEE--E--EEEECTTCTTCCCCEEECTTSSEEEEEETT---TTEEEEEETTTCCEEEEEECCBTTEE-
T ss_pred CCCEEEEEECCCCeE--E--EEEECCCCCCCccEEEECCCCCEEEEEECC---CCeEEEEECCCCcEEEEEecCCCccc-
Confidence 345667766755431 1 111222222346788999999988655332 22465555 56666655544322100
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 172 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 172 (715)
......+.|||||++++.......... .........+.++|..++
T Consensus 81 ---~~~~~~v~~s~dg~~l~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~d~~~~ 125 (337)
T d1pbyb_ 81 ---VKSLFGAALSPDGKTLAIYESPVRLEL--------------------------------THFEVQPTRVALYDAETL 125 (337)
T ss_dssp ---EECTTCEEECTTSSEEEEEEEEEEECS--------------------------------SCEEECCCEEEEEETTTT
T ss_pred ---ccceeeEEEcCCCcEEEEeecCCccee--------------------------------eeccccccceeeccccCC
Confidence 012258999999999988754321110 000112367899999998
Q ss_pred ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCC
Q 005093 173 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 252 (715)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (715)
+.... .........+.|+|||+. ++... .++..+|. .+++
T Consensus 126 ~~~~~--~~~~~~~~~~~~s~dg~~----l~~~~-----------------~~~~~~d~-----------------~~~~ 165 (337)
T d1pbyb_ 126 SRRKA--FEAPRQITMLAWARDGSK----LYGLG-----------------RDLHVMDP-----------------EAGT 165 (337)
T ss_dssp EEEEE--EECCSSCCCEEECTTSSC----EEEES-----------------SSEEEEET-----------------TTTE
T ss_pred eEEEe--ccccCCceEEEEcCCCCE----EEEEc-----------------CCcceeee-----------------ecCc
Confidence 87655 233344667899999998 66543 13445554 3333
Q ss_pred ceecCCCCccccceeEcCCCCeEEEEecC-------------CCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 253 VVNLTESISSAFFPRFSPDGKFLVFLSAK-------------SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 253 ~~~lt~~~~~~~~~~~spdg~~l~~~~~~-------------~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
...............++|++..+...... .............++++++.++.........
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 238 (337)
T d1pbyb_ 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI------- 238 (337)
T ss_dssp EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE-------
T ss_pred EEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC-------
Confidence 22221111222333444554433211110 0000000111223555555544321110000
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCC
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 399 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~ 399 (715)
.........+++++..++.. ...|..+|+.+++...............|++||+.|+....
T Consensus 239 -----------~~~~~~~~~~~~~~~~~~~~-----~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~--- 299 (337)
T d1pbyb_ 239 -----------MDVFYFSTAVNPAKTRAFGA-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA--- 299 (337)
T ss_dssp -----------CSSCEEEEEECTTSSEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB---
T ss_pred -----------CCcceEEEEecccceEEEEc-----cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeC---
Confidence 00012234567888765543 24688899999887665444443445689999998875422
Q ss_pred CCCeEEEEeecccC
Q 005093 400 DVPQVKYGYFVDKA 413 (715)
Q Consensus 400 ~p~~l~~~~~~~~~ 413 (715)
-..|.++|..+.+
T Consensus 300 -~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 300 -LGDLAAYDAETLE 312 (337)
T ss_dssp -SSEEEEEETTTCC
T ss_pred -CCcEEEEECCCCc
Confidence 2458888876543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.01 E-value=2.4e-08 Score=101.57 Aligned_cols=261 Identities=6% Similarity=-0.069 Sum_probs=139.2
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCC-----CCCe-EEEEe-cCCccEEEEecCc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----ESPI-QFELW-SQSQLEKEFHVPQ 87 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~-----~~~~-~~~~~-~~~~~~~~~~~~~ 87 (715)
...+|++|.++.. ..+.+.. +....++|||||+.|++...... .... +..++ .+++....+..+.
T Consensus 45 ~~~~~~~d~~~~~--~~~~~~~------~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~ 116 (368)
T d1mdah_ 45 TTENWVSCAGCGV--TLGHSLG------AFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD 116 (368)
T ss_dssp SEEEEEEETTTTE--EEEEEEE------CTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred cceEEEEeCCCCc--EEEEEeC------CCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCc
Confidence 3568886654442 2332222 22346899999999998764311 1122 44444 5556555554432
Q ss_pred cccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEE
Q 005093 88 TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVI 167 (715)
Q Consensus 88 ~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 167 (715)
... .........+.|||||++|++.... ...+.+|
T Consensus 117 ~~~--~~~g~~p~~~a~SpDGk~l~va~~~-------------------------------------------~~~v~~~ 151 (368)
T d1mdah_ 117 APR--FSVGPRVHIIGNCASSACLLFFLFG-------------------------------------------SSAAAGL 151 (368)
T ss_dssp SCS--CCBSCCTTSEEECTTSSCEEEEECS-------------------------------------------SSCEEEE
T ss_pred cce--ecccCCccceEECCCCCEEEEEeCC-------------------------------------------CCeEEEE
Confidence 211 0001122478999999999875322 1457778
Q ss_pred EccCCceEeecCCCCCC------ccceEEEecCCCCCccEEEEEeecCccce----------------------eeeeee
Q 005093 168 NINSGEVQAVKGIPKSL------SVGQVVWAPLNEGLHQYLVFVGWSSETRK----------------------LGIKYC 219 (715)
Q Consensus 168 ~~~~g~~~~l~~~~~~~------~~~~~~~spdg~~~~~~i~~~~~~~~~~~----------------------~g~~~~ 219 (715)
|+++++.......+... ....+.+++||+. +++.....+... .+.. .
T Consensus 152 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~ 226 (368)
T d1mdah_ 152 SVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASL----AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML-V 226 (368)
T ss_dssp EETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSC----EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE-E
T ss_pred ECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCE----EEEEecCCceeeeeeecccccccccceeecccccCcEE-E
Confidence 88777755431111111 1223456777776 555433222100 0111 1
Q ss_pred ecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCC-------------CccccceeEcCCCCeEEEEecCCCCCC
Q 005093 220 YNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-------------ISSAFFPRFSPDGKFLVFLSAKSSVDS 286 (715)
Q Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-------------~~~~~~~~~spdg~~l~~~~~~~~~~~ 286 (715)
.....+++.+++ ..+....+... .......+++|+++.++.........
T Consensus 227 ~~~~~~v~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~- 288 (368)
T d1mdah_ 227 WAVASSILQGDI-----------------PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS- 288 (368)
T ss_dssp ECBSSCCEEEEC-----------------CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC-
T ss_pred EecCCCEEEEee-----------------cCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCce-
Confidence 122345666665 33333222211 11234578899999887665443211
Q ss_pred CCccccceeEeeecCCCCCC-CcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 005093 287 GAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 365 (715)
Q Consensus 287 g~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~ 365 (715)
......+|+++|..+++.. .+..+. ....+.|+|||+.+++.+.. +...|+.+|..
T Consensus 289 -~~~~~~~v~v~D~~t~~~~~~~~~~~---------------------~~~~~a~spDG~~~ly~s~~-~~~~v~v~D~~ 345 (368)
T d1mdah_ 289 -CLAAAENTSSVTASVGQTSGPISNGH---------------------DSDAIIAAQDGASDNYANSA-GTEVLDIYDAA 345 (368)
T ss_dssp -TTSCEEEEEEEESSSCCEEECCEEEE---------------------EECEEEECCSSSCEEEEEET-TTTEEEEEESS
T ss_pred -eecCCceEEEEECCCCcEeEEecCCC---------------------ceeEEEECCCCCEEEEEEeC-CCCeEEEEECC
Confidence 1123457999998886542 111110 13456799999866555543 33579999999
Q ss_pred CCcEEEecC
Q 005093 366 SGELLRITP 374 (715)
Q Consensus 366 tg~~~~l~~ 374 (715)
+|+......
T Consensus 346 tgk~~~~i~ 354 (368)
T d1mdah_ 346 SDQDQSSVE 354 (368)
T ss_dssp SCEEEEECC
T ss_pred CCCEEEEEE
Confidence 999776554
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=99.00 E-value=4.3e-10 Score=111.82 Aligned_cols=105 Identities=18% Similarity=0.310 Sum_probs=78.3
Q ss_pred CCCCcEEEEEcCCCCCCC----CccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHH
Q 005093 478 CSCDPLIVVLHGGPHSVS----LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 553 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~----~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~ 553 (715)
..++| ||++||...... ...|......|+++||.|+++|++| +|.+. ......+++.+.|+.+.+
T Consensus 6 ~~k~P-vvlvHG~~g~~~~~~~~~~~~~~~~~L~~~G~~V~~~~~~g---~g~s~-------~~~~~~~~l~~~i~~~~~ 74 (319)
T d1cvla_ 6 ATRYP-VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSG---FQSDD-------GPNGRGEQLLAYVKQVLA 74 (319)
T ss_dssp CCSSC-EEEECCTTBSSEETTTEESSTTHHHHHHHTTCCEEECCCBC---SSCTT-------STTSHHHHHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCcchhhhhhhHHHHHHHHHHCCCEEEEecCCC---CCCCC-------CCcccHHHHHHHHHHHHH
Confidence 45678 567899543321 1236678899999999999999998 44332 111235677777777666
Q ss_pred cCCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 554 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 554 ~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
. .+.++|.++||||||.++..++.++|++++.+|++++..
T Consensus 75 ~--~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~p~ 114 (319)
T d1cvla_ 75 A--TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTPH 114 (319)
T ss_dssp H--HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred H--hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECCCC
Confidence 5 246899999999999999999999999999999988753
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=2e-10 Score=123.68 Aligned_cols=128 Identities=23% Similarity=0.256 Sum_probs=91.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCC-CCCchhhhhcCCCCCCccchhh
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVND 543 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~-~~~g~~~~~~~~~~~~~~~~~d 543 (715)
|...||.|++.....+.|++|+||||++..+..........+++++.+||.++||.. -||-.......++ ...+.|
T Consensus 97 L~LnI~~P~~~~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~~g---N~Gl~D 173 (532)
T d2h7ca1 97 LYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHSRG---NWGHLD 173 (532)
T ss_dssp CEEEEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTCCC---CHHHHH
T ss_pred CEEEEEECCCCCCCCCcEEEEEEeCCcccccccccCCchhhhhcCceEEEEEeeccCCCcccccccccccc---ccccHH
Confidence 344588898766677899999999988765544332234456789999999999942 1121111111222 334889
Q ss_pred HHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 005093 544 VLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 595 (715)
Q Consensus 544 ~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~ 595 (715)
.+.|++|+.++ ..-|+++|.|+|+|+||..+..++.. ...+|..+|+.|+..
T Consensus 174 q~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 174 QVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp HHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred HHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 99999999986 34699999999999999988877653 235899999999754
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.96 E-value=4.4e-08 Score=101.77 Aligned_cols=79 Identities=8% Similarity=-0.023 Sum_probs=48.7
Q ss_pred CCCCCccccCCCEEEEEeeeC----CeeEEEEEECCCCcEE-Eec---------CCCCCceeEEEeecCCEEEEEEeC-C
Q 005093 334 SILSNPWLSDGCTMLLSSIWG----SSQVIISVNVSSGELL-RIT---------PAESNFSWSLLTLDGDNIIAVSSS-P 398 (715)
Q Consensus 334 ~~~~~~~~~dg~~l~~~~~~~----~~~~l~~~d~~tg~~~-~l~---------~~~~~~~~~~~s~~~~~l~~~~~~-~ 398 (715)
.+..++++|||+.+++..... ....|..+|+++++.. ++. .....+....||+||++++++..+ .
T Consensus 305 ~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~ 384 (426)
T d1hzua2 305 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK 384 (426)
T ss_dssp CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCT
T ss_pred ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCC
Confidence 456778999999887643211 1235777898887642 221 111122335799999999876643 4
Q ss_pred CCCCeEEEEeeccc
Q 005093 399 VDVPQVKYGYFVDK 412 (715)
Q Consensus 399 ~~p~~l~~~~~~~~ 412 (715)
.....|.+.|..+.
T Consensus 385 ~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 385 NDSSALVVVDDKTL 398 (426)
T ss_dssp TSCCEEEEEETTTT
T ss_pred CCCCeEEEEECCCC
Confidence 45556777775543
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.95 E-value=1.2e-09 Score=106.21 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCCCcEEEEEcCCCCCC---CCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHc
Q 005093 478 CSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 554 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~---~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~ 554 (715)
..++| ||++||..... ....|......|.++||.|+++|+++ ++.... ..+++.+.|+.+.+.
T Consensus 5 ~~~~P-vvlvHG~~g~~~~~~~~yw~~i~~~L~~~G~~v~~~~~~~---~~~~~~----------~a~~l~~~i~~~~~~ 70 (285)
T d1ex9a_ 5 QTKYP-IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQ---LDTSEV----------RGEQLLQQVEEIVAL 70 (285)
T ss_dssp CCSSC-EEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCS---SSCHHH----------HHHHHHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCccccchhhHHHHHHHHHhCCCEEEEeCCCC---CCCcHH----------HHHHHHHHHHHHHHH
Confidence 45688 79999943321 11246778899999999999999998 443321 245666666666555
Q ss_pred CCCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCc
Q 005093 555 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 594 (715)
Q Consensus 555 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 594 (715)
...+++.++||||||.++..++.++|++++.++.++..
T Consensus 71 --~g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~tP 108 (285)
T d1ex9a_ 71 --SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --cCCCeEEEEEECccHHHHHHHHHHCCccceeEEEECCC
Confidence 24578999999999999999999999999999988765
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.95 E-value=3.4e-08 Score=98.69 Aligned_cols=100 Identities=8% Similarity=0.030 Sum_probs=66.1
Q ss_pred EeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCcc
Q 005093 48 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 126 (715)
Q Consensus 48 ~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 126 (715)
|++|++|++|+.....+ .+..++ .+++..+....+.+. ....+.|||||++|+.....
T Consensus 2 ~a~~~~~~~l~~~~~~~----~v~v~D~~t~~~~~t~~~~~~~--------~p~~l~~spDG~~l~v~~~~--------- 60 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPN----NLHVVDVASDTVYKSCVMPDKF--------GPGTAMMAPDNRTAYVLNNH--------- 60 (346)
T ss_dssp CCCCTTCEEEEEEETTT----EEEEEETTTTEEEEEEECSSCC--------SSCEEEECTTSSEEEEEETT---------
T ss_pred ccCCCCCcEEEEEcCCC----EEEEEECCCCCEEEEEEcCCCC--------CcceEEECCCCCEEEEEECC---------
Confidence 68999999998876554 566666 566665555543321 12689999999988765321
Q ss_pred CCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCC-----CccceEEEecCCCCCccE
Q 005093 127 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-----LSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-----~~~~~~~~spdg~~~~~~ 201 (715)
...|++||+++++.......... .....+.|||||+.
T Consensus 61 ----------------------------------~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~---- 102 (346)
T d1jmxb_ 61 ----------------------------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE---- 102 (346)
T ss_dssp ----------------------------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSE----
T ss_pred ----------------------------------CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCE----
Confidence 26799999999976543101111 13457899999997
Q ss_pred EEEEe
Q 005093 202 LVFVG 206 (715)
Q Consensus 202 i~~~~ 206 (715)
++...
T Consensus 103 l~v~~ 107 (346)
T d1jmxb_ 103 VYATV 107 (346)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 65543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=6.8e-08 Score=96.06 Aligned_cols=38 Identities=8% Similarity=-0.088 Sum_probs=30.9
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 005093 335 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 372 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 372 (715)
+..++|+|||++|++.....+...+|.+|.++|+.+++
T Consensus 278 p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 278 PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred eeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEE
Confidence 45678999999887766666778899999999987665
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.92 E-value=2.4e-08 Score=101.57 Aligned_cols=248 Identities=11% Similarity=0.083 Sum_probs=128.5
Q ss_pred eEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCcccccccc
Q 005093 15 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVY 94 (715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (715)
...|.+++++++.. .++ ..+..+.+.+...+|||||++|+-...+ +.-.+|.+ .++.......... ...
T Consensus 28 ~~~i~iw~~~~~~~--~~~--~~l~gH~~~V~~l~fsp~~~~l~s~s~D--~~i~vWd~-~~~~~~~~~~~~~-~~~--- 96 (371)
T d1k8kc_ 28 NHEVHIYEKSGNKW--VQV--HELKEHNGQVTGVDWAPDSNRIVTCGTD--RNAYVWTL-KGRTWKPTLVILR-INR--- 96 (371)
T ss_dssp SSEEEEEEEETTEE--EEE--EEEECCSSCEEEEEEETTTTEEEEEETT--SCEEEEEE-ETTEEEEEEECCC-CSS---
T ss_pred CCEEEEEECCCCCE--EEE--EEecCCCCCEEEEEECCCCCEEEEEECC--CeEEEEee-ccccccccccccc-ccc---
Confidence 34566666765432 111 1122334678999999999998866443 33333333 3333333333221 111
Q ss_pred CCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce
Q 005093 95 ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV 174 (715)
Q Consensus 95 ~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 174 (715)
.+..+.|+|||+.|+..+.. ..|.+|+++.+..
T Consensus 97 ---~v~~i~~~p~~~~l~~~s~d--------------------------------------------~~i~i~~~~~~~~ 129 (371)
T d1k8kc_ 97 ---AARCVRWAPNEKKFAVGSGS--------------------------------------------RVISICYFEQEND 129 (371)
T ss_dssp ---CEEEEEECTTSSEEEEEETT--------------------------------------------SSEEEEEEETTTT
T ss_pred ---cccccccccccccceeeccc--------------------------------------------Ccceeeeeecccc
Confidence 23789999999988875432 3355555544432
Q ss_pred Eee-c--CCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchh-hhhhhhccCCCC
Q 005093 175 QAV-K--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA-SELELKESSSED 250 (715)
Q Consensus 175 ~~l-~--~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~ 250 (715)
... . .......+..+.|+|||+. |+..+. +..|.++++....... ............
T Consensus 130 ~~~~~~~~~~~~~~v~~v~~~p~~~~----l~s~s~---------------D~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 190 (371)
T d1k8kc_ 130 WWVCKHIKKPIRSTVLSLDWHPNSVL----LAAGSC---------------DFKCRIFSAYIKEVEERPAPTPWGSKMPF 190 (371)
T ss_dssp EEEEEEECTTCCSCEEEEEECTTSSE----EEEEET---------------TSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred cccccccccccccccccccccccccc----eecccc---------------CcEEEEEeeccCccccccccccccccccc
Confidence 111 0 0122335667899999997 765441 1234445531000000 000000000001
Q ss_pred C-CceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccc
Q 005093 251 L-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 329 (715)
Q Consensus 251 ~-~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g 329 (715)
+ .......+...+...+|||||++|+..+.+. .|.++|+.++..... +. .
T Consensus 191 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~-----------~i~iwd~~~~~~~~~---------~~-~-------- 241 (371)
T d1k8kc_ 191 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-----------TVCLADADKKMAVAT---------LA-S-------- 241 (371)
T ss_dssp TCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-----------EEEEEEGGGTTEEEE---------EE-C--------
T ss_pred eeeeeeccCccCcEEEEEeecccccccccccCC-----------cceEEeeecccceee---------ee-c--------
Confidence 1 1122233444577889999999998877542 488888876443110 00 0
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 005093 330 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 371 (715)
Q Consensus 330 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 371 (715)
+...+..+.|++||+ ++.... ++...+|.++..++....
T Consensus 242 -~~~~v~s~~fs~d~~-~la~g~-d~~~~~~~~~~~~~~~~~ 280 (371)
T d1k8kc_ 242 -ETLPLLAVTFITESS-LVAAGH-DCFPVLFTYDSAAGKLSF 280 (371)
T ss_dssp -SSCCEEEEEEEETTE-EEEEET-TSSCEEEEEETTTTEEEE
T ss_pred -ccccceeeeecCCCC-EEEEEc-CCceEEEEeeCCCceEEE
Confidence 011234577999986 444433 456678888876655543
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.90 E-value=8.7e-10 Score=118.52 Aligned_cols=127 Identities=18% Similarity=0.194 Sum_probs=90.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc---hHHH--HHHHhCCcEEEEEcCCCC-CCCc--hhhhhcCCCCC
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY---SKSL--AFLSSVGYSLLIVNYRGS-LGFG--EEALQSLPGKV 536 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~---~~~~--~~la~~G~~vi~~d~rG~-~~~g--~~~~~~~~~~~ 536 (715)
|...|+.|++....+++|+||+||||++..+.... .... ...+..+++||.++||-. -||- .+.....++++
T Consensus 106 L~LnI~~P~~~~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~~~~gN~ 185 (544)
T d1thga_ 106 LYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITAEGNTNA 185 (544)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHHTCTTH
T ss_pred CEEEEEECCCCCCCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhhccccccH
Confidence 34458889876677889999999999887654322 2222 234678999999999942 1121 11112233444
Q ss_pred CccchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhC--------CCceeEEEecCCc
Q 005093 537 GSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPL 594 (715)
Q Consensus 537 ~~~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~~~ 594 (715)
-+.|.+.|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|+.+|+.|+.
T Consensus 186 ---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 186 ---GLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp ---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred ---HHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 388999999999986 346999999999999999888776531 2489999999975
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.89 E-value=6.7e-10 Score=117.82 Aligned_cols=126 Identities=20% Similarity=0.245 Sum_probs=88.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch--HHHHHHHhCCcEEEEEcCCCC-CCCc--hhhhhcCCCCCCcc
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGS-LGFG--EEALQSLPGKVGSQ 539 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~--~~~~~la~~G~~vi~~d~rG~-~~~g--~~~~~~~~~~~~~~ 539 (715)
|...||.|+. ..++.|+||+||||++..+..... .....+++.+++|+.++||.. -||- .......++ ..
T Consensus 82 L~lni~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~~GFl~~~~~~~~~~g---N~ 156 (483)
T d1qe3a_ 82 LYVNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYSD---NL 156 (483)
T ss_dssp CEEEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTCTTSCS---CH
T ss_pred CEEEEEECCC--CCCCCceEEEEeecccccCCccccccccccccccCceEEEeecccccchhhcccccccccccc---cc
Confidence 4456888974 467899999999988765443221 123445567899999999942 1121 011111222 33
Q ss_pred chhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 005093 540 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 595 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~ 595 (715)
.+.|.+.|++|+.++ ..-|+++|.|+|+|+||..+..++... ..+|+.+|+.|+..
T Consensus 157 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 157 GLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 488999999999986 236999999999999999988776532 24899999999864
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.89 E-value=1e-09 Score=117.77 Aligned_cols=129 Identities=20% Similarity=0.224 Sum_probs=89.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc-c--hHHH--HHHHhCCcEEEEEcCCCCC-CCch--hhhhcC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-Y--SKSL--AFLSSVGYSLLIVNYRGSL-GFGE--EALQSL 532 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~-~--~~~~--~~la~~G~~vi~~d~rG~~-~~g~--~~~~~~ 532 (715)
|-+.| .|+.|+.....++.|+||+||||++..+... + ..++ ..++.++++||.++||... ||-. ......
T Consensus 96 DCL~L--nI~~P~~~~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~~~ 173 (534)
T d1llfa_ 96 DCLTI--NVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKAEG 173 (534)
T ss_dssp CCCEE--EEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHHT
T ss_pred cCCEE--EEEECCCCCCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCccccccc
Confidence 44444 5889987667789999999999887654432 2 1222 3456889999999999421 1111 111122
Q ss_pred CCCCCccchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhh-----CC---CceeEEEecCCc
Q 005093 533 PGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ-----AP---DKFVAAAARNPL 594 (715)
Q Consensus 533 ~~~~~~~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~-----~p---~~~~~~v~~~~~ 594 (715)
+++ ..+.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++.. .| .+|+.+|+.|+.
T Consensus 174 ~gN---~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 174 SGN---AGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp CTT---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred ccc---cchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 333 3488999999999986 23699999999999999977655531 11 369999999874
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.86 E-value=2e-07 Score=94.47 Aligned_cols=300 Identities=11% Similarity=-0.008 Sum_probs=143.3
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCC-----CCCeEEEEe--cCCccEEEEecC
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW--SQSQLEKEFHVP 86 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~ 86 (715)
....+|++|..++.. .+ .+.. +....++|||||++|++...... .......+| .+++....+..+
T Consensus 45 ~~~~v~v~D~~tg~~--~~----~~~~--~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~ 116 (373)
T d2madh_ 45 AIIQQWVLDAGSGSI--LG----HVNG--GFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP 116 (373)
T ss_pred CCceEEEEECCCCCE--EE----EEeC--CCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecC
Confidence 345688877655432 21 1222 33446899999999998765431 112233444 455555554433
Q ss_pred ccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcc-cCCccCceEE
Q 005093 87 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET-YAGKRQPSLF 165 (715)
Q Consensus 87 ~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~ 165 (715)
......+ ......+.|+|||+.+++...........+..... .............+.++.... +.......+.
T Consensus 117 ~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~ 190 (373)
T d2madh_ 117 DAPRFDV--GPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS----SDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLA 190 (373)
T ss_pred CcceeEe--ccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC----eEEEEeccceeEEEecCCCcEEEEEcCCCeEE
Confidence 2211000 01124689999999998876443222111111100 001111112223344442112 1333457788
Q ss_pred EEEccCCceEeecC---CCC--CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 166 VININSGEVQAVKG---IPK--SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 166 ~~~~~~g~~~~l~~---~~~--~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
+++.++++...... ... ........+++++. +++.... ..++.++... ..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---------------~~v~~~~~~~-----~~ 245 (373)
T d2madh_ 191 KTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-----IVWPVYS---------------GKILQADISA-----AG 245 (373)
T ss_pred EEEcCCceeeEEEeeeccccCccceeeeEEECCCce-----EEEecCC---------------ceEEEEEcCC-----Ce
Confidence 89988887665420 001 11122334455544 3333211 1233333200 00
Q ss_pred hh-hhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 241 LE-LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 241 ~~-~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
.. .........................++|||+.+++......... .......+.++|..+++.......
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~v~~~d~~t~~~~~~~~~-------- 316 (373)
T d2madh_ 246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK-LHAAAKEVTSVTGLVGQTSSQISL-------- 316 (373)
T ss_pred EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEE-eecCCCeEEEEECCCCcEEEEecC--------
Confidence 00 00000011222222222334556789999999887765532110 012234678888777654211100
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
......+.|+|||+.+++.+. .....|+.+|+.+|+......
T Consensus 317 ------------~~~~~~~a~spDG~~~l~vt~-~~d~~v~v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 317 ------------GHDVDAISVAQDGGPDLYALS-AGTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred ------------CCCeeEEEECCCCCEEEEEEe-CCCCeEEEEECCCCCEEEEEC
Confidence 012346789999998766543 334578889999998766554
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=3.3e-09 Score=103.03 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=61.2
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHH-HHHHHHHcC
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMG 555 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~-~i~~l~~~~ 555 (715)
...+.| ||++||++.+ ...|..++..| ++.|+++|++| +|.+. .++++.+ .++.+.+.
T Consensus 22 ~~~~~P-l~l~Hg~~gs--~~~~~~l~~~L---~~~v~~~d~~g---~~~~~-----------~~~~~a~~~~~~~~~~- 80 (286)
T d1xkta_ 22 QSSERP-LFLVHPIEGS--TTVFHSLASRL---SIPTYGLQCTR---AAPLD-----------SIHSLAAYYIDCIRQV- 80 (286)
T ss_dssp CCCSCC-EEEECCTTCC--CGGGHHHHHTC---SSCEEEECCCT---TSCCS-----------CHHHHHHHHHHHHHHH-
T ss_pred CCCCCe-EEEECCCCcc--HHHHHHHHHHc---CCeEEEEeCCC---CCCCC-----------CHHHHHHHHHHHHHHh-
Confidence 334456 7799997766 45677666655 68899999998 43221 1333332 22333333
Q ss_pred CCCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCC
Q 005093 556 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 593 (715)
Q Consensus 556 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 593 (715)
.+.+++.|+||||||.+++.+|.++|+++..++.+..
T Consensus 81 -~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~~ 117 (286)
T d1xkta_ 81 -QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNS 117 (286)
T ss_dssp -CCSSCCEEEEETHHHHHHHHHHHHHHHC------CCE
T ss_pred -cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeEEE
Confidence 2457899999999999999999999998877766554
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=8e-08 Score=97.89 Aligned_cols=265 Identities=15% Similarity=0.059 Sum_probs=127.1
Q ss_pred cccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccc---------cccccCCCcccceeecCCCCe
Q 005093 42 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTV---------HGSVYADGWFEGISWNSDETL 110 (715)
Q Consensus 42 ~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~wSpDg~~ 110 (715)
.+.+...+|||||++||-.. . + ...+| ..++........... ......+..+..+.|||||++
T Consensus 62 ~~~V~~l~fs~dg~~lasg~-d--~---~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 62 TSVVCCVKFSNDGEYLATGC-N--K---TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp SSCCCEEEECTTSSEEEEEC-B--S---CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred CCcEEEEEECCCCCEEEEEe-C--C---eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence 36789999999999988543 2 2 23455 333333222110000 000011224478999999999
Q ss_pred EEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEE
Q 005093 111 IAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVV 190 (715)
Q Consensus 111 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~ 190 (715)
|+..+.+.... .+.....+................+.++............+.+||..+...... ...........
T Consensus 136 l~s~~~dg~v~--i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~ 211 (388)
T d1erja_ 136 LATGAEDRLIR--IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT--LSIEDGVTTVA 211 (388)
T ss_dssp EEEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEE
T ss_pred ceecccccccc--cccccccccccccccccccccccccccccccccccccceeeeeeeccccccccc--ccccccccccc
Confidence 98766543221 111111110000011111122223333322222223457899999988776554 22222333455
Q ss_pred Eec-CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eec-------CCCCc
Q 005093 191 WAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL-------TESIS 261 (715)
Q Consensus 191 ~sp-dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l-------t~~~~ 261 (715)
++| |++. |+... .+..|..+++ .++.. ..+ .....
T Consensus 212 ~~~~~~~~----l~~~~---------------~d~~i~i~~~-----------------~~~~~~~~~~~~~~~~~~h~~ 255 (388)
T d1erja_ 212 VSPGDGKY----IAAGS---------------LDRAVRVWDS-----------------ETGFLVERLDSENESGTGHKD 255 (388)
T ss_dssp ECSTTCCE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEEC------CCCSS
T ss_pred ccCCCCCe----EEEEc---------------CCCeEEEeec-----------------ccCccceeeccccccccCCCC
Confidence 555 6654 44333 2235667775 33322 222 22344
Q ss_pred cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccc
Q 005093 262 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341 (715)
Q Consensus 262 ~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 341 (715)
.+....|+|||+.|+..+.+. .|.++|+.+.................... .+...+..+.|+
T Consensus 256 ~v~~l~~s~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s 317 (388)
T d1erja_ 256 SVYSVVFTRDGQSVVSGSLDR-----------SVKLWNLQNANNKSDSKTPNSGTCEVTYI-------GHKDFVLSVATT 317 (388)
T ss_dssp CEEEEEECTTSSEEEEEETTS-----------EEEEEEC---------------CEEEEEE-------CCSSCEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCC-----------cEEEEeccCCccccccccccccceeeecc-------cccceEEEEEEC
Confidence 578899999999887666542 47788877654422111110000000000 011234567899
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 342 SDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 342 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
++|+.| ++...++ .|..+|+.+++.....
T Consensus 318 ~~~~~l-~sg~~dg--~i~vwd~~~~~~~~~l 346 (388)
T d1erja_ 318 QNDEYI-LSGSKDR--GVLFWDKKSGNPLLML 346 (388)
T ss_dssp GGGCEE-EEEETTS--EEEEEETTTCCEEEEE
T ss_pred CCCCEE-EEEeCCC--EEEEEECCCCcEEEEE
Confidence 999855 4444444 5677798888866543
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.83 E-value=2.3e-09 Score=114.56 Aligned_cols=128 Identities=18% Similarity=0.168 Sum_probs=87.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHH-HHHhCCcEEEEEcCCCC-CCCch--hhhhcCCCCCCcc
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLA-FLSSVGYSLLIVNYRGS-LGFGE--EALQSLPGKVGSQ 539 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~-~~~~~~~-~la~~G~~vi~~d~rG~-~~~g~--~~~~~~~~~~~~~ 539 (715)
|...|+.|+.....++.||+|+||||++..+.. .+..... ...+.+++|+.++||.. -||-. ........+ .
T Consensus 81 L~LnI~~P~~~~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~~~~~~~~~~N---~ 157 (517)
T d1ukca_ 81 LFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDLN---A 157 (517)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSSCTT---H
T ss_pred CEEEEEeCCCCCCCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccceeecCccccccccccc---h
Confidence 444588898665667889999999988766543 2222222 23467789999999942 11111 111111223 3
Q ss_pred chhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhh----CCCceeEEEecCCcc
Q 005093 540 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPLC 595 (715)
Q Consensus 540 ~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~----~p~~~~~~v~~~~~~ 595 (715)
-+.|...|++|+.++ ..-|+++|.|+|+|+||..+..++.. ...+|..+|+.|+..
T Consensus 158 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 158 GLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred hHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 488999999999986 34699999999999999988765543 224899999999854
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.79 E-value=2.3e-07 Score=92.03 Aligned_cols=269 Identities=12% Similarity=0.099 Sum_probs=134.7
Q ss_pred cccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 40 VEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 40 ~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
.+.+.+...+|||||++||-...++ ...+| ..++......... ..+..+.|+|||++|+..+.+
T Consensus 53 GH~~~I~~l~~s~~~~~l~sgs~Dg-----~v~iWd~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~l~~~~~d 118 (340)
T d1tbga_ 53 GHLAKIYAMHWGTDSRLLVSASQDG-----KLIIWDSYTTNKVHAIPLRS---------SWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTT-----EEEEEETTTTEEEEEEECSC---------SCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCEEEEEECCCCCEEEEEECCC-----ceeeeecccceeEEEEeccc---------ccEEeeEeeccceeeeeeccc
Confidence 3457799999999999998765442 45667 3444443333211 123789999999999887654
Q ss_pred CCCCCCCccCCCCCCCCCC-cCCCCCCC---CCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEec
Q 005093 118 PSPSKPTFSLGSTKGGSSD-KDCNSWKG---QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 193 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~sp 193 (715)
..... +........... ........ ......+ ..............+........... ......+....+.+
T Consensus 119 ~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 194 (340)
T d1tbga_ 119 NICSI--YNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAP 194 (340)
T ss_dssp CCEEE--EESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEECT
T ss_pred ceeec--ccccccccccccceecccccccccccccccc-cccccccccccccccccccccccccc-cccceeEeeecccc
Confidence 32211 110000000000 00000000 0000000 00000001122233333222222110 11222344455666
Q ss_pred CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-CceecCCCCccccceeEcCCC
Q 005093 194 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDG 272 (715)
Q Consensus 194 dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~spdg 272 (715)
++.. +.++. .+..|..+|+ .++ ....+......+...+|+|||
T Consensus 195 ~~~~-----~~~~~--------------~d~~v~i~d~-----------------~~~~~~~~~~~h~~~i~~v~~~p~~ 238 (340)
T d1tbga_ 195 DTRL-----FVSGA--------------CDASAKLWDV-----------------REGMCRQTFTGHESDINAICFFPNG 238 (340)
T ss_dssp TSSE-----EEEEE--------------TTTEEEEEET-----------------TTTEEEEEECCCSSCEEEEEECTTS
T ss_pred ccce-----eEEee--------------cCceEEEEEC-----------------CCCcEEEEEeCCCCCeEEEEECCCC
Confidence 6553 33332 2346778886 443 344556666678889999999
Q ss_pred CeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEee
Q 005093 273 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 352 (715)
Q Consensus 273 ~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~ 352 (715)
+.|+..+.+. .+.++++.......... ... ....+..+.|+++++.| ++..
T Consensus 239 ~~l~s~s~d~-----------~i~~~~~~~~~~~~~~~----------~~~-------~~~~i~~~~~s~~~~~l-~~g~ 289 (340)
T d1tbga_ 239 NAFATGSDDA-----------TCRLFDLRADQELMTYS----------HDN-------IICGITSVSFSKSGRLL-LAGY 289 (340)
T ss_dssp SEEEEEETTS-----------CEEEEETTTTEEEEEEC----------CTT-------CCSCEEEEEECSSSCEE-EEEE
T ss_pred CEEEEEeCCC-----------eEEEEeecccccccccc----------ccc-------ccCceEEEEECCCCCEE-EEEE
Confidence 9887766542 37777876543211000 000 01134466799999855 4444
Q ss_pred eCCeeEEEEEECCCCcEEEecCC-CCCceeEEEeecCCEEEE
Q 005093 353 WGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIA 393 (715)
Q Consensus 353 ~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s~~~~~l~~ 393 (715)
.++ .|..+|+.+++....... ...+....|++++..|+.
T Consensus 290 ~dg--~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s 329 (340)
T d1tbga_ 290 DDF--NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp TTS--CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred CCC--EEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence 444 466678888877655443 344444567787776553
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.74 E-value=3.5e-07 Score=94.82 Aligned_cols=205 Identities=9% Similarity=0.011 Sum_probs=119.6
Q ss_pred eeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccC
Q 005093 49 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 127 (715)
Q Consensus 49 ~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 127 (715)
....|.+.+.++..++++ .+..++ .+++....+.....+ ..++|||||++||..+ .
T Consensus 25 ~~~~~~~~~~~v~~~d~g--~v~v~D~~t~~v~~~~~~g~~~----------~~v~fSpDG~~l~~~s-~---------- 81 (432)
T d1qksa2 25 MNDWDLENLFSVTLRDAG--QIALIDGSTYEIKTVLDTGYAV----------HISRLSASGRYLFVIG-R---------- 81 (432)
T ss_dssp CSCCCGGGEEEEEETTTT--EEEEEETTTCCEEEEEECSSCE----------EEEEECTTSCEEEEEE-T----------
T ss_pred eecCCCCcEEEEEEcCCC--EEEEEECCCCcEEEEEeCCCCe----------eEEEECCCCCEEEEEc-C----------
Confidence 344566667666665323 455555 666666665543333 6899999999997642 2
Q ss_pred CCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEee---cCCCC-CCccceEEEecCCCCCccEEE
Q 005093 128 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV---KGIPK-SLSVGQVVWAPLNEGLHQYLV 203 (715)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l---~~~~~-~~~~~~~~~spdg~~~~~~i~ 203 (715)
...+.+||+++++.+.+ ..... ......+.|||||+. |+
T Consensus 82 ---------------------------------dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~----l~ 124 (432)
T d1qksa2 82 ---------------------------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY----AI 124 (432)
T ss_dssp ---------------------------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE----EE
T ss_pred ---------------------------------CCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE----EE
Confidence 15689999988874332 10011 112234467889997 66
Q ss_pred EEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCC------------CccccceeEcCC
Q 005093 204 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES------------ISSAFFPRFSPD 271 (715)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~------------~~~~~~~~~spd 271 (715)
.+.. ....|.++|. ++++....... ........+|||
T Consensus 125 vs~~--------------~~~~v~i~d~-----------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d 173 (432)
T d1qksa2 125 AGAY--------------WPPQYVIMDG-----------------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY 173 (432)
T ss_dssp EEEE--------------ETTEEEEEET-----------------TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred EEcC--------------CCCeEEEEeC-----------------ccccceeeeccCCccccceeccCCCceeEEEECCC
Confidence 5542 2236778886 55554433211 112334577888
Q ss_pred CCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEe
Q 005093 272 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 351 (715)
Q Consensus 272 g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~ 351 (715)
|+.+++..... ..+++++..+.+...+.. + .. + ..+..+.++|||++++...
T Consensus 174 g~~~~vs~~~~----------~~i~~~d~~~~~~~~~~~-------i---~~-g-------~~~~~~~~spdg~~~~va~ 225 (432)
T d1qksa2 174 RPEFIVNVKET----------GKILLVDYTDLNNLKTTE-------I---SA-E-------RFLHDGGLDGSHRYFITAA 225 (432)
T ss_dssp SSEEEEEETTT----------TEEEEEETTCSSEEEEEE-------E---EC-C-------SSEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEEccC----------CeEEEEEccCCCcceEEE-------E---cc-c-------CccccceECCCCCEEEEec
Confidence 88877665543 357888876644322110 0 00 0 0123567999999777765
Q ss_pred eeCCeeEEEEEECCCCcEEEecC
Q 005093 352 IWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 352 ~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
... ..+..+|.++++......
T Consensus 226 ~~~--~~v~v~d~~~~~~~~~~~ 246 (432)
T d1qksa2 226 NAR--NKLVVIDTKEGKLVAIED 246 (432)
T ss_dssp GGG--TEEEEEETTTTEEEEEEE
T ss_pred ccc--ceEEEeecccceEEEEec
Confidence 433 467778988888776543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.73 E-value=4.4e-08 Score=101.76 Aligned_cols=188 Identities=9% Similarity=-0.052 Sum_probs=110.3
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|.+||.++++.... .+....+..++|||||++ ++... +...|.++|+
T Consensus 42 g~v~v~D~~t~~v~~~--~~~g~~~~~v~fSpDG~~----l~~~s---------------~dg~v~~~d~---------- 90 (432)
T d1qksa2 42 GQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRY----LFVIG---------------RDGKVNMIDL---------- 90 (432)
T ss_dssp TEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCE----EEEEE---------------TTSEEEEEET----------
T ss_pred CEEEEEECCCCcEEEE--EeCCCCeeEEEECCCCCE----EEEEc---------------CCCCEEEEEe----------
Confidence 6799999999987655 233345778999999997 65443 2236778886
Q ss_pred hhhccCCCCCCce---ecC---CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeee
Q 005093 242 ELKESSSEDLPVV---NLT---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 315 (715)
Q Consensus 242 ~~~~~~~~~~~~~---~lt---~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~ 315 (715)
.+++.. .+. .+.+...+|.|||||++|+.+...+ ..+.++|..+++...........
T Consensus 91 -------~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~----------~~v~i~d~~t~~~~~~~~~~~~~ 153 (432)
T d1qksa2 91 -------WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP----------PQYVIMDGETLEPKKIQSTRGMT 153 (432)
T ss_dssp -------TSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET----------TEEEEEETTTCCEEEEEECCEEC
T ss_pred -------eCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC----------CeEEEEeCccccceeeeccCCcc
Confidence 444422 221 2333467789999999986655432 35888898876653322111100
Q ss_pred eeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe---cCCCCCceeEEEeecCCEEE
Q 005093 316 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI---TPAESNFSWSLLTLDGDNII 392 (715)
Q Consensus 316 ~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l---~~~~~~~~~~~~s~~~~~l~ 392 (715)
.. ...+. .......+.+++||..++++... ...++.+|..+++...+ ..+.. .....++++|+.++
T Consensus 154 ~~------~~~~~--~~~~~~~v~~s~dg~~~~vs~~~--~~~i~~~d~~~~~~~~~~~i~~g~~-~~~~~~spdg~~~~ 222 (432)
T d1qksa2 154 YD------EQEYH--PEPRVAAILASHYRPEFIVNVKE--TGKILLVDYTDLNNLKTTEISAERF-LHDGGLDGSHRYFI 222 (432)
T ss_dssp TT------TCCEE--SCCCEEEEEECSSSSEEEEEETT--TTEEEEEETTCSSEEEEEEEECCSS-EEEEEECTTSCEEE
T ss_pred cc------ceecc--CCCceeEEEECCCCCEEEEEEcc--CCeEEEEEccCCCcceEEEEcccCc-cccceECCCCCEEE
Confidence 00 00000 00011234578888877665543 34678888877664443 32322 33468899998888
Q ss_pred EEEeCCCCCCeEEEEeecc
Q 005093 393 AVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 393 ~~~~~~~~p~~l~~~~~~~ 411 (715)
+...... .+..++..+
T Consensus 223 va~~~~~---~v~v~d~~~ 238 (432)
T d1qksa2 223 TAANARN---KLVVIDTKE 238 (432)
T ss_dssp EEEGGGT---EEEEEETTT
T ss_pred Eeccccc---eEEEeeccc
Confidence 7664332 355556543
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.71 E-value=7.7e-09 Score=111.23 Aligned_cols=131 Identities=21% Similarity=0.146 Sum_probs=87.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc--chHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS--YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~--~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
|-+.| .|+.|.. ...++.||+|+||||++..+... ........++.+++|+.++||-.. +|--.........+.
T Consensus 95 DCL~L--nI~~P~~-~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vvvVt~nYRlg~-~Gfl~~~~~~~~~gN 170 (542)
T d2ha2a1 95 DCLYL--NVWTPYP-RPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGT-FGFLALPGSREAPGN 170 (542)
T ss_dssp CCCEE--EEEEESS-CCSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHH-HHHCCCTTCSSCCSC
T ss_pred cCCEE--EEEecCC-CCCCCCcEEEEEEECccccccCcccccCchhhhhhccceeEeeeeeccc-eeeecccccccCCCc
Confidence 44444 5888874 24578899999999887543321 111223345689999999999411 111000001112233
Q ss_pred cchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 005093 539 QDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 595 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~ 595 (715)
.-+.|.+.|++|+.++ ..-|+++|.|+|+|+||..+..++... ..+|..+|+.++..
T Consensus 171 ~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 171 VGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 3488999999999986 346999999999999999998777642 25899999988743
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=2.7e-06 Score=82.73 Aligned_cols=259 Identities=15% Similarity=0.103 Sum_probs=136.1
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecC
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 118 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~ 118 (715)
+.+.+...+|||||+.||-.+.++ ...+| .+++....+.. ..+ .+..+.|+|++..++.....
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s~Dg-----~i~iWd~~~~~~~~~~~~---h~~------~V~~~~~~~~~~~~~~~~~~- 80 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKG---HTD------SVQDISFDHSGKLLASCSAD- 80 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECC---CSS------CEEEEEECTTSSEEEEEETT-
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCEEEEEeC---CCC------cEEEEeeecccccccccccc-
Confidence 447799999999999888655432 34556 44554443322 111 23789999999988876432
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCC
Q 005093 119 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 198 (715)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~ 198 (715)
..+..++....+..... ...........|+|+++.
T Consensus 81 -------------------------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 115 (317)
T d1vyhc1 81 -------------------------------------------MTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDH- 115 (317)
T ss_dssp -------------------------------------------SCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSE-
T ss_pred -------------------------------------------ccccccccccccccccc-ccccccceeeeccCCCce-
Confidence 22344444444433331 223345667889999997
Q ss_pred ccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-CceecCCCCccccceeEcCCCCeEEE
Q 005093 199 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVF 277 (715)
Q Consensus 199 ~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~spdg~~l~~ 277 (715)
++... .+..+..+|+ .++ ....+...........|+|||+.|+.
T Consensus 116 ---~~~~~---------------~d~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 116 ---IVSAS---------------RDKTIKMWEV-----------------QTGYCVKTFTGHREWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp ---EEEEE---------------TTSEEEEEET-----------------TTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ---EEeec---------------cCcceeEeec-----------------ccceeeeEEccCCCcceeeecccCCCEEEE
Confidence 76554 2235677776 433 34455555666788899999998877
Q ss_pred EecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCe
Q 005093 278 LSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 356 (715)
Q Consensus 278 ~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~ 356 (715)
.+.+. .+.++++.++.... +......+..+..........-.............++. ++++...++
T Consensus 161 ~~~d~-----------~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~- 227 (317)
T d1vyhc1 161 CSNDQ-----------TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDK- 227 (317)
T ss_dssp EETTS-----------CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTS-
T ss_pred EeCCC-----------eEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCc-eeEeccCCC-
Confidence 66543 36667766544321 11111111111111111000000001112222334454 444444443
Q ss_pred eEEEEEECCCCcEEEec-CCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 357 QVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 357 ~~l~~~d~~tg~~~~l~-~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
.+..+|+.+++..... .....+....++++++.|+....+ ..|.+.++.++
T Consensus 228 -~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~ 279 (317)
T d1vyhc1 228 -TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD----KTLRVWDYKNK 279 (317)
T ss_dssp -EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT----TEEEEECCTTS
T ss_pred -EEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECC----CeEEEEECCCC
Confidence 5666788888765433 333334445677777766544322 24666665443
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.70 E-value=3e-09 Score=115.28 Aligned_cols=131 Identities=19% Similarity=0.175 Sum_probs=85.9
Q ss_pred CCCceEEEEEEecCCCC-CCCCCcEEEEEcCCCCCCCCcc---ch----HHHHHH-HhCCcEEEEEcCCCC-CCCchhhh
Q 005093 460 GAQKPFEAIFVSSSHKK-DCSCDPLIVVLHGGPHSVSLSS---YS----KSLAFL-SSVGYSLLIVNYRGS-LGFGEEAL 529 (715)
Q Consensus 460 ~~g~~l~~~l~~P~~~~-~~~~~P~vv~iHGg~~~~~~~~---~~----~~~~~l-a~~G~~vi~~d~rG~-~~~g~~~~ 529 (715)
.|-+.| .||.|.... ..++.|||||||||++..+... +. .....| +..+++||.++||.. -||-....
T Consensus 78 EDCL~L--NI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~~GFl~~~~ 155 (579)
T d2bcea_ 78 EDCLYL--NIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGD 155 (579)
T ss_dssp SCCCEE--EEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCSS
T ss_pred CcCCEE--EEEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeecccccccccccccc
Confidence 344444 588886532 3467999999999876543221 10 111334 345699999999942 11111111
Q ss_pred hcCCCCCCccchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 005093 530 QSLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 595 (715)
Q Consensus 530 ~~~~~~~~~~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~ 595 (715)
...+++ .-+.|.+.|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|+.+|+.|+..
T Consensus 156 ~~~~gN---~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 156 SNLPGN---YGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp TTCCCC---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred cCCCcc---chhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 122333 3488999999999986 34699999999999999988876653 245899999998743
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=7.3e-07 Score=88.46 Aligned_cols=250 Identities=9% Similarity=0.026 Sum_probs=132.3
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEec-CCccEEEEecCccccccccCCCcccceeecC--CCCeEEEEeecCCC
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEPSP 120 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSp--Dg~~la~~~~~~~~ 120 (715)
.....+|+|+|+.|||..... ..+..+.. ......+......... .+..++||| ||++|+-.+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~---~~i~~~~~~~~~~~~~~~~~gh~~~------~v~~v~fsP~~~g~~lasgs~---- 85 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKS---AFVRCLDDGDSKVPPVVQFTGHGSS------VVTTVKFSPIKGSQYLCSGDE---- 85 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTE---EEEEECCSSCCSSCSEEEECTTTTS------CEEEEEECSSTTCCEEEEEET----
T ss_pred CeEEEEECCCCCEEEEEeCCC---EEEEEEeCCCCCccceEEEeCCCCC------CEEEEEEeeCCCCCEEEEEeC----
Confidence 456778999999999974331 12222222 2222222222211111 237899998 4555554321
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceE-eecC------CCCCCccceEEEec
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKG------IPKSLSVGQVVWAP 193 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~l~~------~~~~~~~~~~~~sp 193 (715)
...|.+||+..++.. .+.. ......+..+.|+|
T Consensus 86 ----------------------------------------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 125 (325)
T d1pgua1 86 ----------------------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF 125 (325)
T ss_dssp ----------------------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT
T ss_pred ----------------------------------------CCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC
Confidence 256788887654321 1100 11223467889999
Q ss_pred CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-CceecCCCCccccceeEcCCC
Q 005093 194 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDG 272 (715)
Q Consensus 194 dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~spdg 272 (715)
||+. |+..+... ...+..++. +++ ....+..+...+....|+|++
T Consensus 126 ~~~~----l~~~~~~~-------------~~~~~~~~~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~ 171 (325)
T d1pgua1 126 EGRR----LCVVGEGR-------------DNFGVFISW-----------------DSGNSLGEVSGHSQRINACHLKQSR 171 (325)
T ss_dssp TSSE----EEEEECCS-------------SCSEEEEET-----------------TTCCEEEECCSCSSCEEEEEECSSS
T ss_pred CCCc----cceeeccc-------------cceEEEEee-----------------cccccceeeeecccccccccccccc
Confidence 9998 87765321 123555554 333 345556566778889999999
Q ss_pred CeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEee
Q 005093 273 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 352 (715)
Q Consensus 273 ~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~ 352 (715)
+.++.+...+ ..+.+++....+...-. . . ... ....+..++|+||+..++++..
T Consensus 172 ~~~~~~~~~d----------~~v~~~d~~~~~~~~~~---------~-~-~~~-----~~~~v~~v~~~pd~~~~l~s~~ 225 (325)
T d1pgua1 172 PMRSMTVGDD----------GSVVFYQGPPFKFSASD---------R-T-HHK-----QGSFVRDVEFSPDSGEFVITVG 225 (325)
T ss_dssp SCEEEEEETT----------TEEEEEETTTBEEEEEE---------C-S-SSC-----TTCCEEEEEECSTTCCEEEEEE
T ss_pred cceEEEeecc----------cccccccccccccceec---------c-c-ccC-----CCCccEEeeeccccceeccccc
Confidence 9876655443 24667776553321000 0 0 000 0112345679998666777666
Q ss_pred eCCeeEEEEEECCCCcEEEecCC-CCCceeEEEe---ecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 353 WGSSQVIISVNVSSGELLRITPA-ESNFSWSLLT---LDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 353 ~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s---~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
.++. |..+|+.+++....... ...+....++ +++..|+... .+ ..|.+.++.++
T Consensus 226 ~d~~--i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s--~D--~~i~iwd~~~~ 283 (325)
T d1pgua1 226 SDRK--ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG--AD--ATIRVWDVTTS 283 (325)
T ss_dssp TTCC--EEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE--TT--SEEEEEETTTT
T ss_pred cccc--eeeeeeccccccccccccccccccceeeeeccCCCEEEEEe--CC--CeEEEEECCCC
Confidence 5554 55568888887655432 2222222343 4566554332 22 23555565443
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.68 E-value=8.3e-09 Score=110.63 Aligned_cols=130 Identities=22% Similarity=0.148 Sum_probs=88.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc--hHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCc
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY--SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 538 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~--~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~ 538 (715)
|-+.| .|+.|+. ..++.|++||||||++..+.... ......+++++++||.++||... +|--.........+.
T Consensus 90 DCL~L--nI~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vvvVt~nYRlg~-~GFl~~~~~~~~~gN 164 (532)
T d1ea5a_ 90 DCLYL--NIWVPSP--RPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGA-FGFLALHGSQEAPGN 164 (532)
T ss_dssp CCCEE--EEEECSS--CCSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHH-HHHCCCTTCSSSCSC
T ss_pred cCCEE--EEEeCCC--CCCCCcEEEEEEcCCcccccCCccccCcchhhcccCccEEEEeecccc-ccccccccccCCCCc
Confidence 55445 5788974 45679999999998865533221 11233456889999999999421 111000001112223
Q ss_pred cchhhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 005093 539 QDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 595 (715)
Q Consensus 539 ~~~~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~ 595 (715)
.-+.|...|++|+.++ ..-|+++|.|+|+|+||..+..++... ..+|..+|+.++..
T Consensus 165 ~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 165 VGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred ccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 3489999999999986 346999999999999999888776631 25899999888654
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.68 E-value=1.3e-08 Score=110.04 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=79.4
Q ss_pred CCCCCcEEEEEcCCCCCCCCccc-hHHHHHH-HhCCcEEEEEcCCCCC-CCc-------hhhhhcCCCCCCccchhhHHH
Q 005093 477 DCSCDPLIVVLHGGPHSVSLSSY-SKSLAFL-SSVGYSLLIVNYRGSL-GFG-------EEALQSLPGKVGSQDVNDVLT 546 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~~~~~~~-~~~~~~l-a~~G~~vi~~d~rG~~-~~g-------~~~~~~~~~~~~~~~~~d~~~ 546 (715)
..++.|+|||||||++..+.... ......| ++.+.+||.++||... ||- .......+++ .-+.|.+.
T Consensus 135 ~~~~lPV~V~ihGG~f~~Gs~~~~~~~~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN---~Gl~Dq~~ 211 (571)
T d1dx4a_ 135 TTNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGN---VGLWDQAL 211 (571)
T ss_dssp CCSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSC---HHHHHHHH
T ss_pred CCCCCeEEEEEeCCCccCCCCcccccchhhhhhcCCeeEEeecceeccccccccccccccccccCCCCc---ccchHHHH
Confidence 35788999999998876543321 1112334 3456999999999421 111 0111112223 34889999
Q ss_pred HHHHHHHcC---CCCCceEEEEEeChhHHHHHHHHhhC--CCceeEEEecCCcch
Q 005093 547 AIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 596 (715)
Q Consensus 547 ~i~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~~ 596 (715)
|++|+.++. .-|+++|.|+|+|+||..+..++... ..+|+.+|+.++...
T Consensus 212 AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 212 AIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 999999972 36999999999999999998776542 348999998887543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.65 E-value=7.3e-07 Score=86.96 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=99.2
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
..+...++||||+.++..... ...+|..++...+. ..... ..+.|+||++.|+....
T Consensus 100 ~~~~~~~~s~~g~~~~~~~~~------~i~~~~~~~~~~~~-~~~~~----------~~~~~s~~~~~l~~g~~------ 156 (299)
T d1nr0a2 100 SQPLGLAVSADGDIAVAACYK------HIAIYSHGKLTEVP-ISYNS----------SCVALSNDKQFVAVGGQ------ 156 (299)
T ss_dssp SCEEEEEECTTSSCEEEEESS------EEEEEETTEEEEEE-CSSCE----------EEEEECTTSCEEEEEET------
T ss_pred ccccccccccccccccccccc------cccccccccccccc-ccccc----------ccccccccccccccccc------
Confidence 346678899999977655332 23455443333322 12222 57899999998877432
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 202 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i 202 (715)
...|.+||+++++...+........+..++|+|+++. |
T Consensus 157 --------------------------------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l 194 (299)
T d1nr0a2 157 --------------------------------------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF----L 194 (299)
T ss_dssp --------------------------------------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE----E
T ss_pred --------------------------------------ccccccccccccccccccccccccccccccccccccc----c
Confidence 2679999999887655421223345778999999986 6
Q ss_pred EEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc----eecCCCCccccceeEcCCCCeEEEE
Q 005093 203 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFL 278 (715)
Q Consensus 203 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~lt~~~~~~~~~~~spdg~~l~~~ 278 (715)
+... ....|+.+|+ .++.. ..+..+...+...+|+|||++|+..
T Consensus 195 ~~~~---------------~d~~i~~~~~-----------------~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sg 242 (299)
T d1nr0a2 195 VATD---------------QSRKVIPYSV-----------------ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242 (299)
T ss_dssp EEEE---------------TTSCEEEEEG-----------------GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred cccc---------------cccccccccc-----------------cccccccccccccccccccccccccccccceEEE
Confidence 6543 2236888886 33222 2233344567888999999998877
Q ss_pred ecCCCCCCCCccccceeEeeecCCCCC
Q 005093 279 SAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 279 ~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
+.+. .|+++|+.++..
T Consensus 243 s~dg-----------~i~iwd~~~~~~ 258 (299)
T d1nr0a2 243 SLDN-----------SVIVWNMNKPSD 258 (299)
T ss_dssp ETTS-----------CEEEEETTCTTS
T ss_pred cCCC-----------EEEEEECCCCCc
Confidence 6552 388888877554
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.8e-08 Score=107.76 Aligned_cols=127 Identities=19% Similarity=0.150 Sum_probs=85.7
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-h-HHHHHHHhCCcEEEEEcCCCC-CCCchhhhhcCCCCCCccch
Q 005093 465 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-S-KSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDV 541 (715)
Q Consensus 465 l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~-~-~~~~~la~~G~~vi~~d~rG~-~~~g~~~~~~~~~~~~~~~~ 541 (715)
|...||.|.. ..++.|+||+||||++..+.... . ......++.+++|+.++||-. -||-.. .......+..-+
T Consensus 90 L~lnI~~P~~--~~~~~PV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vVvVt~nYRlg~~Gfl~~--~~~~~~~gN~Gl 165 (526)
T d1p0ia_ 90 LYLNVWIPAP--KPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLAL--PGNPEAPGNMGL 165 (526)
T ss_dssp CEEEEEEESS--CCSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCC--TTCTTSCSCHHH
T ss_pred CEEEEEeCCC--CCCCCceEEEEECCCcccccCcccccCccccccccceeEEecccccccccccCC--CCcccccccccc
Confidence 3445888974 45678999999998876544321 1 122234577999999999942 111110 001112233348
Q ss_pred hhHHHHHHHHHHc---CCCCCceEEEEEeChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 005093 542 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 595 (715)
Q Consensus 542 ~d~~~~i~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~ 595 (715)
.|.+.|++|+.++ ..-|+++|.|+|+|+||..+..++.. ...+|+.+|+.++..
T Consensus 166 ~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 166 FDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred cchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 8999999999886 34699999999999999998766653 234789998887653
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.64 E-value=7.9e-07 Score=91.95 Aligned_cols=208 Identities=8% Similarity=-0.024 Sum_probs=116.1
Q ss_pred eEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 46 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
..+.+++|.+.++++...+++ .+..++ .+++....+.....+ ..++|||||++||... .
T Consensus 22 ~~~~~~~d~~~~~~V~~~~dg--~v~vwD~~t~~~~~~l~~g~~~----------~~vafSPDGk~l~~~~-~------- 81 (426)
T d1hzua2 22 KKQLNDLDLPNLFSVTLRDAG--QIALVDGDSKKIVKVIDTGYAV----------HISRMSASGRYLLVIG-R------- 81 (426)
T ss_dssp SSCCSCCCGGGEEEEEETTTT--EEEEEETTTCSEEEEEECCSSE----------EEEEECTTSCEEEEEE-T-------
T ss_pred CcccccCCCCeEEEEEEcCCC--EEEEEECCCCcEEEEEeCCCCe----------eEEEECCCCCEEEEEe-C-------
Confidence 446788899988888776433 444444 556655555443333 6899999999886542 1
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEee---cCCC-CCCccceEEEecCCCCCcc
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV---KGIP-KSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l---~~~~-~~~~~~~~~~spdg~~~~~ 200 (715)
...|.+||+++++...+ .... .......+.|||||+.
T Consensus 82 ------------------------------------d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~--- 122 (426)
T d1hzua2 82 ------------------------------------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY--- 122 (426)
T ss_dssp ------------------------------------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE---
T ss_pred ------------------------------------CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE---
Confidence 15689999999875432 1011 1112335567899998
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCC-C-----------CccccceeE
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-S-----------ISSAFFPRF 268 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~-----------~~~~~~~~~ 268 (715)
++...... ..+..+|. .++....... . .+.......
T Consensus 123 -l~v~~~~~--------------~~v~i~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (426)
T d1hzua2 123 -TIAGAYWP--------------PQFAIMDG-----------------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170 (426)
T ss_dssp -EEEEEEES--------------SEEEEEET-----------------TTCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred -EEEeecCC--------------CeEEEEcC-----------------CccceeEEeeccCCCccceeecCCCceeEEEE
Confidence 76654221 24666665 4444332221 1 112233455
Q ss_pred cCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEE
Q 005093 269 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 348 (715)
Q Consensus 269 spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~ 348 (715)
|+|++.+++..... ..+..++........++.-. .+ ..+..+.++|++++++
T Consensus 171 s~d~~~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~-----------~~-------~~~~~~~~~~~g~~~~ 222 (426)
T d1hzua2 171 SHEHPEFIVNVKET----------GKVLLVNYKDIDNLTVTSIG-----------AA-------PFLADGGWDSSHRYFM 222 (426)
T ss_dssp CSSSSEEEEEETTT----------TEEEEEECSSSSSCEEEEEE-----------CC-------SSEEEEEECTTSCEEE
T ss_pred CCCCCEEEEecCCC----------CeEEEEEeccccceeeEEec-----------cC-------CccEeeeECCCCcEEE
Confidence 67776665554332 23555554443322111100 00 1223557899999776
Q ss_pred EEeeeCCeeEEEEEECCCCcEEEecC
Q 005093 349 LSSIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 349 ~~~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
..... ...+..++..+++......
T Consensus 223 ~a~~~--~~~~~~~~~~~~~~~~~~~ 246 (426)
T d1hzua2 223 TAANN--SNKVAVIDSKDRRLSALVD 246 (426)
T ss_dssp EEETT--CSEEEEEETTTTEEEEEEE
T ss_pred eeeec--ccceeeeecccccEEEEec
Confidence 65433 3566678888888776654
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=98.63 E-value=3.5e-08 Score=94.32 Aligned_cols=207 Identities=13% Similarity=0.088 Sum_probs=110.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHH-HHHHHcCCC
Q 005093 479 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLA 557 (715)
Q Consensus 479 ~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i-~~l~~~~~~ 557 (715)
...|.++++||.........|..++..|.. .+.|+.++.+| ++.. .....+++++.+.+ +.+.+. .
T Consensus 40 ~~~~~l~c~~~~~~gg~~~~y~~La~~L~~-~~~V~al~~pG---~~~~-------e~~~~s~~~~a~~~~~~i~~~--~ 106 (255)
T d1mo2a_ 40 PGEVTVICCAGTAAISGPHEFTRLAGALRG-IAPVRAVPQPG---YEEG-------EPLPSSMAAVAAVQADAVIRT--Q 106 (255)
T ss_dssp SCSSEEEEECCCSSSCSGGGGHHHHHHHTT-TCCEEEECCTT---SSTT-------CCEESSHHHHHHHHHHHHHHT--T
T ss_pred CCCCeEEEECCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCC---cCCC-------CCCCCCHHHHHHHHHHHHHHh--C
Confidence 456889999973222224578788888855 48999999998 4432 11122466666543 444443 2
Q ss_pred CCceEEEEEeChhHHHHHHHHhhC---CCceeEEEecCCcchhhhhccCCCCCCceeeeccCCCCCCCCCCCCChhh---
Q 005093 558 NPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED--- 631 (715)
Q Consensus 558 d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 631 (715)
...++.|+|||+||.+++.+|.+. ...+..++++.+......... ..+. ...................
T Consensus 107 ~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld~~~p~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~l~a 180 (255)
T d1mo2a_ 107 GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAM----NAWL--EELTATLFDRETVRMDDTRLTA 180 (255)
T ss_dssp SSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEECSCSSHHHHH----HHHH--HHHHTTCC----CCCCHHHHHH
T ss_pred CCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEECCCCCCCccch----hhHH--HHHHHHhhccccccCCHHHHHH
Confidence 356899999999999999888754 445777777665332110000 0000 0000000000000000111
Q ss_pred HHHHHhcCchhhccCCCCcEEEEeeCCCCcCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc-CCCCCchHHHHHHHHHHH
Q 005093 632 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG-IERPQSDFESFLNIGLWF 710 (715)
Q Consensus 632 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~-~~~~~~~~~~~~~i~~wl 710 (715)
...+...-.......+.+|++++.+.+|........ . .......++++.+++ +|. +.. +......+.|-+||
T Consensus 181 ~~~~~~~~~~~~~~~~~~p~l~v~a~~~~~~~~~~~--w---~~~~~~~~~~~~v~G-~H~~ml~-~~~~~~A~~i~~~L 253 (255)
T d1mo2a_ 181 LGAYDRLTGQWRPRETGLPTLLVSAGEPMGPWPDDS--W---KPTWPFEHDTVAVPG-DHFTMVQ-EHADAIARHIDAWL 253 (255)
T ss_dssp HHHHHHHHHHCCCCCCCCCEEEEECCSSSSCCTTCC--C---CCCCCSSCEEEECCS-CCSSCSS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccccceEEEeecCCCCCcchhhH--H---HHhCCCCcEEEEECC-CCccccc-ccHHHHHHHHHHHh
Confidence 111111111112356789999999987755432211 1 011234678889987 675 443 45556677777887
Q ss_pred H
Q 005093 711 K 711 (715)
Q Consensus 711 ~ 711 (715)
.
T Consensus 254 ~ 254 (255)
T d1mo2a_ 254 G 254 (255)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.59 E-value=2.1e-08 Score=82.42 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=58.8
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCCCCC
Q 005093 480 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 559 (715)
Q Consensus 480 ~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~d~ 559 (715)
..|.||++||... .| .+.| .++|.|+++|+|| ||.+.. + ....+++.+.+..+.+. .+.
T Consensus 20 ~G~pvlllHG~~~-----~w---~~~L-~~~yrvi~~DlpG---~G~S~~---p----~~s~~~~a~~i~~ll~~--L~i 78 (122)
T d2dsta1 20 KGPPVLLVAEEAS-----RW---PEAL-PEGYAFYLLDLPG---YGRTEG---P----RMAPEELAHFVAGFAVM--MNL 78 (122)
T ss_dssp CSSEEEEESSSGG-----GC---CSCC-CTTSEEEEECCTT---STTCCC---C----CCCHHHHHHHHHHHHHH--TTC
T ss_pred CCCcEEEEecccc-----cc---cccc-cCCeEEEEEeccc---cCCCCC---c----ccccchhHHHHHHHHHH--hCC
Confidence 4678999999421 22 1223 5799999999999 665531 1 23466677766666665 345
Q ss_pred ceEEEEEeChhHHHHHHHHhhCCC
Q 005093 560 SKVTVVGGSHGGFLTTHLIGQAPD 583 (715)
Q Consensus 560 ~~i~l~G~S~GG~~a~~~a~~~p~ 583 (715)
++..|+||||||.+++.+++..+.
T Consensus 79 ~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 79 GAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp CSCEEEECGGGGGGHHHHHHTTCC
T ss_pred CCcEEEEeCccHHHHHHHHhhccc
Confidence 788999999999999999986543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.58 E-value=1.3e-05 Score=80.58 Aligned_cols=88 Identities=10% Similarity=0.035 Sum_probs=48.7
Q ss_pred EEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccC
Q 005093 16 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYA 95 (715)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (715)
..|+++.++.+......+.....+ +....+..++||||+.|+.. +. +.-..|.++..+....+...+.+.
T Consensus 14 ~~i~~~~fd~~~~~l~~~~~~~~~-~~~~~s~la~s~d~~~ly~~-~~--~~~~~~~i~~~~~~~~~~~~~~~~------ 83 (365)
T d1jofa_ 14 GAIFTVQFDDEKLTCKLIKRTEIP-QDEPISWMTFDHERKNIYGA-AM--KKWSSFAVKSPTEIVHEASHPIGG------ 83 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECC-TTCCCSEEEECTTSSEEEEE-EB--TEEEEEEEEETTEEEEEEEEECCS------
T ss_pred CCEEEEEEcCCCCeEEEeeeeecc-CCCCCCEEEEcCCCCEEEEE-eC--CcEEEEEEeCCCCeEEEeeecCCC------
Confidence 358888788776533222121121 11335678999999888654 33 334566666433333332221111
Q ss_pred CCcccceeecCCCCeEEEEe
Q 005093 96 DGWFEGISWNSDETLIAYVA 115 (715)
Q Consensus 96 ~~~~~~~~wSpDg~~la~~~ 115 (715)
....+.++|||+.++.+.
T Consensus 84 --~p~~v~~~~~~~~~~v~~ 101 (365)
T d1jofa_ 84 --HPRANDADTNTRAIFLLA 101 (365)
T ss_dssp --SGGGGCTTSCCEEEEEEE
T ss_pred --CcEEEEECCCCCEEEEEE
Confidence 115889999998876654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.57 E-value=9.5e-06 Score=79.78 Aligned_cols=256 Identities=14% Similarity=0.091 Sum_probs=142.7
Q ss_pred eEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEE-ecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 005093 46 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 123 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 123 (715)
..|+|.++|+ |+|+... ...|+.+. .++...... ...... .+++++|||+ |++..... .
T Consensus 43 EG~~~D~~G~-Ly~~D~~---~g~I~ri~p~g~~~~~~~~~~~~~p----------~gla~~~dG~-l~va~~~~-~--- 103 (319)
T d2dg1a1 43 EGLNFDRQGQ-LFLLDVF---EGNIFKINPETKEIKRPFVSHKANP----------AAIKIHKDGR-LFVCYLGD-F--- 103 (319)
T ss_dssp EEEEECTTSC-EEEEETT---TCEEEEECTTTCCEEEEEECSSSSE----------EEEEECTTSC-EEEEECTT-S---
T ss_pred EeCEECCCCC-EEEEECC---CCEEEEEECCCCeEEEEEeCCCCCe----------eEEEECCCCC-EEEEecCC-C---
Confidence 4689999997 7666432 33688877 444433332 222222 6899999996 43332111 0
Q ss_pred CccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeec-CCCCCCccceEEEecCCCCCccEE
Q 005093 124 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYL 202 (715)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~-~~~~~~~~~~~~~spdg~~~~~~i 202 (715)
. ....++..+.+++....+. .........+..+.|||+ |
T Consensus 104 ------------------------------~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-----l 143 (319)
T d2dg1a1 104 ------------------------------K-----STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-----F 143 (319)
T ss_dssp ------------------------------S-----SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-----E
T ss_pred ------------------------------c-----cceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-----e
Confidence 0 1256778888777765542 112223455788999996 6
Q ss_pred EEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 203 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 203 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
+++...... ......+++++. +++..+.+.........++|||||++|+++....
T Consensus 144 ~vtd~~~~~--------~~~~g~v~~~~~-----------------dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~ 198 (319)
T d2dg1a1 144 YFTDFRGYS--------TNPLGGVYYVSP-----------------DFRTVTPIIQNISVANGIALSTDEKVLWVTETTA 198 (319)
T ss_dssp EEEECCCBT--------TBCCEEEEEECT-----------------TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred eeccccccc--------ccCcceeEEEec-----------------ccceeEEEeeccceeeeeeeccccceEEEecccC
Confidence 666422111 112346889985 5666666655444567799999999988776542
Q ss_pred CCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 005093 283 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 362 (715)
Q Consensus 283 ~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~ 362 (715)
..|+++++.............. . ....... .+..++..++|+ ||+.... ...|.++
T Consensus 199 ----------~~I~~~d~~~~g~~~~~~~~~~--~--~~~~~~~-------~PdGl~vD~~G~-l~Va~~~--~g~V~~~ 254 (319)
T d2dg1a1 199 ----------NRLHRIALEDDGVTIQPFGATI--P--YYFTGHE-------GPDSCCIDSDDN-LYVAMYG--QGRVLVF 254 (319)
T ss_dssp ----------TEEEEEEECTTSSSEEEEEEEE--E--EECCSSS-------EEEEEEEBTTCC-EEEEEET--TTEEEEE
T ss_pred ----------CceEEEEEcCCCceecccccee--e--eccCCcc-------ceeeeeEcCCCC-EEEEEcC--CCEEEEE
Confidence 4689998865432111100000 0 0000000 123456777887 6665433 3578899
Q ss_pred ECCCCcEEEecCCCC------CceeEEEeecCCEEEEEEeCCCCC--CeEEEEee
Q 005093 363 NVSSGELLRITPAES------NFSWSLLTLDGDNIIAVSSSPVDV--PQVKYGYF 409 (715)
Q Consensus 363 d~~tg~~~~l~~~~~------~~~~~~~s~~~~~l~~~~~~~~~p--~~l~~~~~ 409 (715)
|.+...+..+..... ......+.++++.++.+......+ ..||+++.
T Consensus 255 ~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 255 NKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp CTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 986544555543221 122345666667777776554434 34666664
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.55 E-value=4.2e-07 Score=90.42 Aligned_cols=288 Identities=9% Similarity=0.023 Sum_probs=140.5
Q ss_pred cceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccc
Q 005093 13 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHG 91 (715)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 91 (715)
+....|.++|+.+... +...+++. -......+|||||++|+.....+ ..+..++ ..++.............
T Consensus 15 ~~~~~v~v~D~~t~~~----~~t~~~~~-~~~p~~l~~spDG~~l~v~~~~~---~~v~~~d~~t~~~~~~~~~~~~~~~ 86 (346)
T d1jmxb_ 15 NYPNNLHVVDVASDTV----YKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHY---GDIYGIDLDTCKNTFHANLSSVPGE 86 (346)
T ss_dssp ETTTEEEEEETTTTEE----EEEEECSS-CCSSCEEEECTTSSEEEEEETTT---TEEEEEETTTTEEEEEEESCCSTTE
T ss_pred cCCCEEEEEECCCCCE----EEEEEcCC-CCCcceEEECCCCCEEEEEECCC---CcEEEEeCccCeeeeeecccccccc
Confidence 3455788888865532 11112221 13467889999999886553322 3455555 55555544443221100
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCC----------ccCCCCCCCCCCcCCCCCCC-CCcccCCcCcccCCcc
Q 005093 92 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPT----------FSLGSTKGGSSDKDCNSWKG-QGDWEEDWGETYAGKR 160 (715)
Q Consensus 92 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~ 160 (715)
.. .....+.|||||++++............ +................... ......+.+..+. .
T Consensus 87 ~~---~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 161 (346)
T d1jmxb_ 87 VG---RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV--A 161 (346)
T ss_dssp EE---ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE--E
T ss_pred cC---CceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE--e
Confidence 00 0125889999999987764322111000 00000000000000000000 0111111122111 2
Q ss_pred CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCcccee-e---------e-eeeecCCceEEEE
Q 005093 161 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL-G---------I-KYCYNRPCALYAV 229 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~-g---------~-~~~~~~~~~i~~~ 229 (715)
...+.++++.+++.... ...........++|++.. ++........... . . ....+....+..+
T Consensus 162 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
T d1jmxb_ 162 GPDIYKMDVKTGKYTVA--LPLRNWNRKGYSAPDVLY----FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235 (346)
T ss_dssp SSSEEEECTTTCCEEEE--ECSTTCCCTTBCCCBCCC----CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred CCcceEEEccCCCEEEE--EecCCCccceEEeccccE----EEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence 24577888887776543 222233445667888886 4433211110000 0 0 0000112246666
Q ss_pred ecccccchhhhhhhhccCCCCCCcee--cCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC
Q 005093 230 RVSLYKSEASELELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 307 (715)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~--lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~ 307 (715)
++ .++.... +...........+++++.++++.... .++++|+.+++...
T Consensus 236 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~v~d~~~~~~~~ 286 (346)
T d1jmxb_ 236 DL-----------------KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN------------RLAKYDLKQRKLIK 286 (346)
T ss_dssp ET-----------------TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEES------------EEEEEETTTTEEEE
T ss_pred EC-----------------CCCceEEEEeecccceeEEEEEeCCCCEEEEecCC------------eEEEEECCCCcEEE
Confidence 65 4444332 23334456677889999988876533 38888987755321
Q ss_pred cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 005093 308 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 371 (715)
Q Consensus 308 lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 371 (715)
.. .. ...+..++|+|||++++.... ++ .|..+|+++++...
T Consensus 287 ~~----------~~----------~~~~~~va~s~DG~~l~v~~~-d~--~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 287 AA----------NL----------DHTYYCVAFDKKGDKLYLGGT-FN--DLAVFNPDTLEKVK 327 (346)
T ss_dssp EE----------EC----------SSCCCEEEECSSSSCEEEESB-SS--EEEEEETTTTEEEE
T ss_pred EE----------cC----------CCCEEEEEEcCCCCEEEEEeC-CC--cEEEEECccCCEEE
Confidence 10 00 013456789999998876543 33 68888999987654
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=1.6e-06 Score=84.35 Aligned_cols=258 Identities=10% Similarity=-0.009 Sum_probs=132.9
Q ss_pred ceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccccc
Q 005093 14 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGS 92 (715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 92 (715)
.+..|.++|+.+... ... +..+.+.+...+|+|++..++...... .+.... ...+...... ...
T Consensus 37 ~Dg~i~iWd~~~~~~-~~~-----~~~h~~~V~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~-- 101 (317)
T d1vyhc1 37 EDATIKVWDYETGDF-ERT-----LKGHTDSVQDISFDHSGKLLASCSADM----TIKLWDFQGFECIRTMH---GHD-- 101 (317)
T ss_dssp SSSCEEEEETTTCCC-CEE-----ECCCSSCEEEEEECTTSSEEEEEETTS----CCCEEETTSSCEEECCC---CCS--
T ss_pred CCCeEEEEECCCCCE-EEE-----EeCCCCcEEEEeeeccccccccccccc----ccccccccccccccccc---ccc--
Confidence 344566666655432 122 222336788999999999998775543 122222 2222211111 111
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCC
Q 005093 93 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 172 (715)
Q Consensus 93 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 172 (715)
.......|+|+++.|+.... ...+.+||+.++
T Consensus 102 ----~~~~~~~~~~~~~~~~~~~~--------------------------------------------d~~~~~~~~~~~ 133 (317)
T d1vyhc1 102 ----HNVSSVSIMPNGDHIVSASR--------------------------------------------DKTIKMWEVQTG 133 (317)
T ss_dssp ----SCEEEEEECSSSSEEEEEET--------------------------------------------TSEEEEEETTTC
T ss_pred ----ccceeeeccCCCceEEeecc--------------------------------------------CcceeEeecccc
Confidence 12267899999998876532 256888999887
Q ss_pred ceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-
Q 005093 173 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL- 251 (715)
Q Consensus 173 ~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 251 (715)
+..... .........+.|+||++. |+... .+..|..+++ ..+
T Consensus 134 ~~~~~~-~~~~~~~~~~~~~~~~~~----l~~~~---------------~d~~v~~~~~-----------------~~~~ 176 (317)
T d1vyhc1 134 YCVKTF-TGHREWVRMVRPNQDGTL----IASCS---------------NDQTVRVWVV-----------------ATKE 176 (317)
T ss_dssp CEEEEE-ECCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET-----------------TTCC
T ss_pred eeeeEE-ccCCCcceeeecccCCCE----EEEEe---------------CCCeEEEEee-----------------ccce
Confidence 654431 223335667899999986 65543 2235666665 222
Q ss_pred CceecCCCCccccceeEcCCCCeEEEEecCCCCCC-----CC----ccccceeEeeecCCCCCCCcccceeeeeeceecC
Q 005093 252 PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDS-----GA----HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA 322 (715)
Q Consensus 252 ~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~-----g~----~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~ 322 (715)
....+...........|+|++..+........... +. ......+.++++.++..... +
T Consensus 177 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~----------~--- 243 (317)
T d1vyhc1 177 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT----------L--- 243 (317)
T ss_dssp EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE----------E---
T ss_pred eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE----------E---
Confidence 23334444444555666665543221111100000 00 00112466666655432100 0
Q ss_pred CCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cCCCCCceeEEEeecCCEEEE
Q 005093 323 EGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIA 393 (715)
Q Consensus 323 ~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~~~~~l~~ 393 (715)
.+ +...+..+.|+|+++.|+ +...++ .|..+|+.+++.... ......+....|+++++.|+.
T Consensus 244 -----~~-~~~~v~~~~~~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s 306 (317)
T d1vyhc1 244 -----VG-HDNWVRGVLFHSGGKFIL-SCADDK--TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 306 (317)
T ss_dssp -----EC-CSSCEEEEEECSSSSCEE-EEETTT--EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEE
T ss_pred -----eC-CCCCEEEEEECCCCCEEE-EEECCC--eEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 00 111344567999998554 444444 566678877765443 333344444567888776654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=1.5e-06 Score=86.18 Aligned_cols=164 Identities=12% Similarity=0.052 Sum_probs=100.0
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
+.+...+|||||++|+.+.... +.......++.++...... +..+ .+..+.|+|+++.++..+..
T Consensus 116 ~~v~~v~~s~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~---~h~~------~v~~~~~~~~~~~~~~~~~~----- 180 (325)
T d1pgua1 116 GPISDISWDFEGRRLCVVGEGR-DNFGVFISWDSGNSLGEVS---GHSQ------RINACHLKQSRPMRSMTVGD----- 180 (325)
T ss_dssp SCEEEEEECTTSSEEEEEECCS-SCSEEEEETTTCCEEEECC---SCSS------CEEEEEECSSSSCEEEEEET-----
T ss_pred CcEEEEEECCCCCccceeeccc-cceEEEEeecccccceeee---eccc------ccccccccccccceEEEeec-----
Confidence 5578899999999999876543 2222222234444333221 1111 22689999999987665432
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEee-c-CCCCCCccceEEEecCCCCCcc
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-K-GIPKSLSVGQVVWAPLNEGLHQ 200 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l-~-~~~~~~~~~~~~~spdg~~~~~ 200 (715)
...+.+|+..+++...- . .......+..++|+||+..
T Consensus 181 --------------------------------------d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~--- 219 (325)
T d1pgua1 181 --------------------------------------DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE--- 219 (325)
T ss_dssp --------------------------------------TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC---
T ss_pred --------------------------------------ccccccccccccccceecccccCCCCccEEeeeccccce---
Confidence 25688888877654332 1 1122334678899999776
Q ss_pred EEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCCCccccceeEc---CCCCeEE
Q 005093 201 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFS---PDGKFLV 276 (715)
Q Consensus 201 ~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~s---pdg~~l~ 276 (715)
++.++.. +..|.++|+ .+++. ..+..+........|+ |||++|+
T Consensus 220 -~l~s~~~--------------d~~i~iwd~-----------------~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~ 267 (325)
T d1pgua1 220 -FVITVGS--------------DRKISCFDG-----------------KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 267 (325)
T ss_dssp -EEEEEET--------------TCCEEEEET-----------------TTCCEEEECCBTTBCCCSCEEEEEESSSSEEE
T ss_pred -ecccccc--------------ccceeeeee-----------------ccccccccccccccccccceeeeeccCCCEEE
Confidence 6665532 235778886 44443 4455444555556666 7999888
Q ss_pred EEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 277 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
..+.+. .|.++|+.+++.
T Consensus 268 s~s~D~-----------~i~iwd~~~~~~ 285 (325)
T d1pgua1 268 TVGADA-----------TIRVWDVTTSKC 285 (325)
T ss_dssp EEETTS-----------EEEEEETTTTEE
T ss_pred EEeCCC-----------eEEEEECCCCCE
Confidence 766542 478888887553
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.49 E-value=2.2e-05 Score=80.69 Aligned_cols=274 Identities=10% Similarity=0.093 Sum_probs=148.2
Q ss_pred CCCceEEEEecCCCCCCe-EEEEe-cCCccEEEEecCcc-ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 005093 52 PSGSKLLVVRNPENESPI-QFELW-SQSQLEKEFHVPQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 128 (715)
Q Consensus 52 pdg~~la~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 128 (715)
..|.+..|..+.++.... ++... ..+..+-+++.... ..+.+ ...++++||||++|||..+..
T Consensus 81 ~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~----~~~~~~~Spd~~~la~s~d~~---------- 146 (430)
T d1qfma1 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV----ALRGYAFSEDGEYFAYGLSAS---------- 146 (430)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSSSSCCEEEECGGGGCSSSCE----EEEEEEECTTSSEEEEEEEET----------
T ss_pred EeCCEEEEEEecCCCccceEEeccccCCCeeeecchhhhcccccc----eecceEecCCCCEEEEEeccc----------
Confidence 467777776655433333 33333 34555555553221 11111 124678999999999987654
Q ss_pred CCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeec
Q 005093 129 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 208 (715)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~ 208 (715)
|. ....|+++|+++|+.... .-.......+.|++|++. |+|+...
T Consensus 147 ------------------------G~-----e~~~l~v~Dl~tg~~~~~--~i~~~~~~~~~W~~D~~~----~~Y~~~~ 191 (430)
T d1qfma1 147 ------------------------GS-----DWVTIKFMKVDGAKELPD--VLERVKFSCMAWTHDGKG----MFYNAYP 191 (430)
T ss_dssp ------------------------TC-----SCEEEEEEETTTTEEEEE--EEEEECSCCEEECTTSSE----EEEEECC
T ss_pred ------------------------cC-----chheeEEeccCcceeccc--ccccccccceEEcCCCCE----EEEEEec
Confidence 22 348899999999986543 111223357899999999 9998753
Q ss_pred Cccc-eeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc--eecCCC-Cc--cccceeEcCCCCeEEEEecCC
Q 005093 209 SETR-KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTES-IS--SAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 209 ~~~~-~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~-~~--~~~~~~~spdg~~l~~~~~~~ 282 (715)
.... ..+..-...+...+|+..+ .+... ..+... .. .......|+||++|+......
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~h~l-----------------gt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~ 254 (430)
T d1qfma1 192 QQDGKSDGTETSTNLHQKLYYHVL-----------------GTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG 254 (430)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEET-----------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS
T ss_pred cccCcccccccccCCcceEEEEEC-----------------CCCccccccccccccCCceEEeeeccCCcceeeEEeecc
Confidence 2211 1111112345568999887 33222 222222 22 234566799999987766543
Q ss_pred CCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCc-cccCCCEEEEEeeeC-CeeEEE
Q 005093 283 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP-WLSDGCTMLLSSIWG-SSQVII 360 (715)
Q Consensus 283 ~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~dg~~l~~~~~~~-~~~~l~ 360 (715)
. .....+|.+++............ ..++.... ..... ...+|..+++.++.. ...+|+
T Consensus 255 ~------~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~------------~~~~~~~~~~~~~~~~~Tn~~a~~~~L~ 314 (430)
T d1qfma1 255 C------DPVNRLWYCDLQQESNGITGILK--WVKLIDNF------------EGEYDYVTNEGTVFTFKTNRHSPNYRLI 314 (430)
T ss_dssp S------SSCCEEEEEEGGGSSSSSCSSCC--CEEEECSS------------SSCEEEEEEETTEEEEEECTTCTTCEEE
T ss_pred C------CccEEEEEeeCCCcccccccccc--eeEeeccc------------ccceEEEecCCceeecccCcccccceeE
Confidence 2 23356888887653321111000 01111000 00111 122455677766644 457899
Q ss_pred EEECCCCc---EEEecCC-CCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 005093 361 SVNVSSGE---LLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 361 ~~d~~tg~---~~~l~~~-~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~ 412 (715)
.++++... .+.+.+. ........++..++.|++.... +.-++|.++++.++
T Consensus 315 ~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~-~~~~~l~v~~~~~~ 369 (430)
T d1qfma1 315 NIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLHDLATG 369 (430)
T ss_dssp EEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEEETTTC
T ss_pred EecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEc-CCEeEEEEEECCCC
Confidence 99987543 3455443 3323334555666777655533 35556878787654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=1.1e-06 Score=89.10 Aligned_cols=253 Identities=9% Similarity=0.011 Sum_probs=124.3
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 120 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 120 (715)
..+...+|||||++|+.....+ ...+| ..++...... +... .+..+.|++++..++..+.....
T Consensus 122 ~~V~~l~~s~~~~~l~s~~~dg-----~v~i~~~~~~~~~~~~~---~h~~------~v~~~~~~~~~~~~~~~~~~~~i 187 (388)
T d1erja_ 122 LYIRSVCFSPDGKFLATGAEDR-----LIRIWDIENRKIVMILQ---GHEQ------DIYSLDYFPSGDKLVSGSGDRTV 187 (388)
T ss_dssp CBEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC---CCSS------CEEEEEECTTSSEEEEEETTSEE
T ss_pred CCEEEEEECCCCCcceeccccc-----ccccccccccccccccc---cccc------cccccccccccccccccccceee
Confidence 4578899999999998765543 34455 3333332222 1111 22688999999988776543321
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccC-CccCceEEEEEccCCceEe-ecC-----CCCCCccceEEEec
Q 005093 121 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA-GKRQPSLFVININSGEVQA-VKG-----IPKSLSVGQVVWAP 193 (715)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~-l~~-----~~~~~~~~~~~~sp 193 (715)
. .+......... ............+.+.-+..+. ......|++++..++.... +.. ......+..+.|+|
T Consensus 188 ~--~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 264 (388)
T d1erja_ 188 R--IWDLRTGQCSL-TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264 (388)
T ss_dssp E--EEETTTTEEEE-EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred e--eeecccccccc-ccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC
Confidence 1 11110000000 0000000011112221122222 2234679999998876543 210 11123567889999
Q ss_pred CCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCC-CceecCCCCccccceeEcCCC
Q 005093 194 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDG 272 (715)
Q Consensus 194 dg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~spdg 272 (715)
||+. |+..+ .+..|..+|+....... .......+ ...........+...+|+|||
T Consensus 265 ~~~~----l~s~~---------------~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 320 (388)
T d1erja_ 265 DGQS----VVSGS---------------LDRSVKLWNLQNANNKS-----DSKTPNSGTCEVTYIGHKDFVLSVATTQND 320 (388)
T ss_dssp TSSE----EEEEE---------------TTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGG
T ss_pred CCCE----EEEEE---------------CCCcEEEEeccCCcccc-----ccccccccceeeecccccceEEEEEECCCC
Confidence 9997 66544 22245566651000000 00000011 111222334457889999999
Q ss_pred CeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEe
Q 005093 273 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 351 (715)
Q Consensus 273 ~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~ 351 (715)
++|+..+.+. .|+++|+.+++... +......+..+. -.....|+||++ ++++.
T Consensus 321 ~~l~sg~~dg-----------~i~vwd~~~~~~~~~l~~H~~~V~~~~--------------~~~~~~~spd~~-~l~s~ 374 (388)
T d1erja_ 321 EYILSGSKDR-----------GVLFWDKKSGNPLLMLQGHRNSVISVA--------------VANGSSLGPEYN-VFATG 374 (388)
T ss_dssp CEEEEEETTS-----------EEEEEETTTCCEEEEEECCSSCEEEEE--------------ECSSCTTCTTCE-EEEEE
T ss_pred CEEEEEeCCC-----------EEEEEECCCCcEEEEEeCCCCCEEEEE--------------EecCcccCCCCC-EEEEE
Confidence 9887666542 48889988765421 111111111110 123456899997 55666
Q ss_pred eeCCeeEEEEE
Q 005093 352 IWGSSQVIISV 362 (715)
Q Consensus 352 ~~~~~~~l~~~ 362 (715)
..++..+||.+
T Consensus 375 s~Dg~I~iW~~ 385 (388)
T d1erja_ 375 SGDCKARIWKY 385 (388)
T ss_dssp ETTSEEEEEEE
T ss_pred eCCCEEEEEee
Confidence 66776677765
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.48 E-value=2.7e-05 Score=75.34 Aligned_cols=239 Identities=13% Similarity=0.106 Sum_probs=138.7
Q ss_pred eEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 46 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 46 ~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
-.|.|.+....|.|+--. ...++.++ .+++ ..+..++... ..+.+.+||+.+ +..
T Consensus 21 Egp~wd~~~~~l~wvDi~---~~~I~r~d~~~g~-~~~~~~~~~~----------~~i~~~~dg~l~-va~--------- 76 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNIL---ERELHELHLASGR-KTVHALPFMG----------SALAKISDSKQL-IAS--------- 76 (295)
T ss_dssp EEEEEETTTTEEEEEEGG---GTEEEEEETTTTE-EEEEECSSCE----------EEEEEEETTEEE-EEE---------
T ss_pred eCCeEECCCCEEEEEECC---CCEEEEEECCCCe-EEEEECCCCc----------EEEEEecCCCEE-EEE---------
Confidence 458999988899988532 23688887 5544 4455555544 678888888544 321
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCC---CCccceEEEecCCCCCccE
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQY 201 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~~~~~spdg~~~~~~ 201 (715)
...|+++|+++++.+.+..... .....+....|+|+
T Consensus 77 ------------------------------------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~----- 115 (295)
T d2ghsa1 77 ------------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA----- 115 (295)
T ss_dssp ------------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-----
T ss_pred ------------------------------------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-----
Confidence 1458999999999887731111 12455778899997
Q ss_pred EEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 202 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 202 i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
|.+....... ......+|.++ .++.+.+.........+.||+|++.++++...
T Consensus 116 iw~~~~~~~~--------~~~~g~l~~~~-------------------~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~ 168 (295)
T d2ghsa1 116 LWIGTMGRKA--------ETGAGSIYHVA-------------------KGKVTKLFADISIPNSICFSPDGTTGYFVDTK 168 (295)
T ss_dssp EEEEEEETTC--------CTTCEEEEEEE-------------------TTEEEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred EEEEeccccc--------cccceeEeeec-------------------CCcEEEEeeccCCcceeeecCCCceEEEeecc
Confidence 6666532211 11223455554 24555554444445679999999999888765
Q ss_pred CCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 005093 282 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 361 (715)
Q Consensus 282 ~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~ 361 (715)
. ..||+++++....... ........ ...... .+..++...+|+ |++..-.. ..|++
T Consensus 169 ~----------~~I~~~~~d~~~~~~~-~~~~~~~~---~~~~~g-------~pdG~~vD~~Gn-lWva~~~~--g~V~~ 224 (295)
T d2ghsa1 169 V----------NRLMRVPLDARTGLPT-GKAEVFID---STGIKG-------GMDGSVCDAEGH-IWNARWGE--GAVDR 224 (295)
T ss_dssp T----------CEEEEEEBCTTTCCBS-SCCEEEEE---CTTSSS-------EEEEEEECTTSC-EEEEEETT--TEEEE
T ss_pred c----------ceeeEeeecccccccc-cceEEEec---cCcccc-------cccceEEcCCCC-EEeeeeCC--CceEE
Confidence 3 3588888764332111 11100000 000010 123445667886 55543333 37899
Q ss_pred EECCCCcEEEecCCCCCceeEEEe-ecCCEEEEEEeCCCC
Q 005093 362 VNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSSSPVD 400 (715)
Q Consensus 362 ~d~~tg~~~~l~~~~~~~~~~~~s-~~~~~l~~~~~~~~~ 400 (715)
+|+++.....+..+........|- ++.+.||+++++...
T Consensus 225 ~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~~ 264 (295)
T d2ghsa1 225 YDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHL 264 (295)
T ss_dssp ECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTC
T ss_pred ecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCcCC
Confidence 998766666665443323334444 466788887765443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.42 E-value=1.1e-05 Score=79.24 Aligned_cols=137 Identities=12% Similarity=-0.001 Sum_probs=81.6
Q ss_pred eEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCc
Q 005093 69 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 147 (715)
Q Consensus 69 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (715)
++..++ .+++....+....... ....+.|||||++|+.....
T Consensus 12 ~v~v~D~~s~~~~~~i~~~~~~~-------~~~~i~~spDg~~l~v~~~~------------------------------ 54 (337)
T d1pbyb_ 12 KLVVIDTEKMAVDKVITIADAGP-------TPMVPMVAPGGRIAYATVNK------------------------------ 54 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTT-------CCCCEEECTTSSEEEEEETT------------------------------
T ss_pred EEEEEECCCCeEEEEEECCCCCC-------CccEEEECCCCCEEEEEECC------------------------------
Confidence 565555 5556555554422110 12689999999988764321
Q ss_pred ccCCcCcccCCccCceEEEEEccCCceEee-cCCCC---CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCC
Q 005093 148 WEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 223 (715)
Q Consensus 148 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l-~~~~~---~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~ 223 (715)
...|++||+++++.... ..... ......++|||||+. ++.......... + ......
T Consensus 55 -------------~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~----l~~~~~~~~~~~--~-~~~~~~ 114 (337)
T d1pbyb_ 55 -------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT----LAIYESPVRLEL--T-HFEVQP 114 (337)
T ss_dssp -------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE----EEEEEEEEEECS--S-CEEECC
T ss_pred -------------CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcE----EEEeecCCccee--e-eccccc
Confidence 26799999999987543 10111 123457899999997 766543211100 0 011133
Q ss_pred ceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEe
Q 005093 224 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~ 279 (715)
..+..+|. .+++...............|||||++++..+
T Consensus 115 ~~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 115 TRVALYDA-----------------ETLSRRKAFEAPRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp CEEEEEET-----------------TTTEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred cceeeccc-----------------cCCeEEEeccccCCceEEEEcCCCCEEEEEc
Confidence 46777886 5555544444445567789999999887654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.41 E-value=6.2e-05 Score=73.13 Aligned_cols=238 Identities=14% Similarity=0.131 Sum_probs=127.2
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 124 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 124 (715)
...++++|||+ |++. +. ....++.+..+|....+....... .+++|+|||+ |++....
T Consensus 30 ~e~iAv~pdG~-l~vt-~~--~~~~I~~i~p~g~~~~~~~~~~~~----------~gla~~~dG~-l~v~~~~------- 87 (302)
T d2p4oa1 30 LENLASAPDGT-IFVT-NH--EVGEIVSITPDGNQQIHATVEGKV----------SGLAFTSNGD-LVATGWN------- 87 (302)
T ss_dssp EEEEEECTTSC-EEEE-ET--TTTEEEEECTTCCEEEEEECSSEE----------EEEEECTTSC-EEEEEEC-------
T ss_pred cCCEEECCCCC-EEEE-eC--CCCEEEEEeCCCCEEEEEcCCCCc----------ceEEEcCCCC-eEEEecC-------
Confidence 45789999997 4433 33 334788888666666666655544 7899999998 4443221
Q ss_pred ccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccC--CceEeecCCCCCCccceEEEecCCCCCccEE
Q 005093 125 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 202 (715)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i 202 (715)
...++++++.+ +....+.............+.+||+ +
T Consensus 88 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-----~ 126 (302)
T d2p4oa1 88 ------------------------------------ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-----Y 126 (302)
T ss_dssp ------------------------------------TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-----E
T ss_pred ------------------------------------CceEEEEEecccccceeeccccCCccccceeEEccCCC-----E
Confidence 13345555443 3344332122333455678888886 4
Q ss_pred EEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceec-----------CCCCccccceeEcCC
Q 005093 203 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-----------TESISSAFFPRFSPD 271 (715)
Q Consensus 203 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------t~~~~~~~~~~~spd 271 (715)
++.. . ....+|.++. .++..... ......... .++|
T Consensus 127 ~v~~-~-------------~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ng--i~~~ 173 (302)
T d2p4oa1 127 LTAD-S-------------YRGAIWLIDV-----------------VQPSGSIWLEHPMLARSNSESVFPAANG--LKRF 173 (302)
T ss_dssp EEEE-T-------------TTTEEEEEET-----------------TTTEEEEEEECGGGSCSSTTCCSCSEEE--EEEE
T ss_pred Eeec-c-------------ccccceeeec-----------------cCCcceeEecCCccceeeccCccccccc--cccc
Confidence 4432 1 2236777765 33322111 001111222 3456
Q ss_pred CCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEEEe
Q 005093 272 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 351 (715)
Q Consensus 272 g~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~ 351 (715)
++.+++..... ..|++++........... . .. . ......+++.+||+ ||+..
T Consensus 174 ~~~l~~~~~~~----------~~i~~~~~~~~~~~~~~~-~--~~----~----------~~~pdgia~d~dG~-l~va~ 225 (302)
T d2p4oa1 174 GNFLYVSNTEK----------MLLLRIPVDSTDKPGEPE-I--FV----E----------QTNIDDFAFDVEGN-LYGAT 225 (302)
T ss_dssp TTEEEEEETTT----------TEEEEEEBCTTSCBCCCE-E--EE----E----------SCCCSSEEEBTTCC-EEEEC
T ss_pred CCceeeecCCC----------CeEEeccccccccccccc-c--cc----C----------CCCCcceEECCCCC-EEEEE
Confidence 77787766543 468898876644321100 0 00 0 01345678999997 66655
Q ss_pred eeCCeeEEEEEECCCCcEEEecC-CCC--CceeEEE---eecCCEEEEEEeC--------CCCCCeEEEEee
Q 005093 352 IWGSSQVIISVNVSSGELLRITP-AES--NFSWSLL---TLDGDNIIAVSSS--------PVDVPQVKYGYF 409 (715)
Q Consensus 352 ~~~~~~~l~~~d~~tg~~~~l~~-~~~--~~~~~~~---s~~~~~l~~~~~~--------~~~p~~l~~~~~ 409 (715)
... .++++++++ |+...+.. ... ......| ++|++.||++... ...|..++++++
T Consensus 226 ~~~--~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g~~~~~~~~~~~~~~~~~~~ 294 (302)
T d2p4oa1 226 HIY--NSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGGMFLPPPTGVVPANVVRLEV 294 (302)
T ss_dssp BTT--CCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTTSSSCCTTCCCCEEEEEEEC
T ss_pred cCC--CcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCCccCCCcCCcCCCeEEEEeC
Confidence 433 468889885 55444432 211 1233456 4566778776543 334445555554
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=2.4e-05 Score=76.52 Aligned_cols=58 Identities=10% Similarity=-0.026 Sum_probs=37.5
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEe
Q 005093 336 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 396 (715)
Q Consensus 336 ~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~ 396 (715)
..++|+|+++. +++...++ .|..+|+.+++...............++++++.+++..+
T Consensus 255 ~~l~~sp~~~~-lasg~~Dg--~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~s 312 (342)
T d1yfqa_ 255 NSIEFSPRHKF-LYTAGSDG--IISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312 (342)
T ss_dssp EEEEECTTTCC-EEEEETTS--CEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEE
T ss_pred eeEEecCCccE-EEEECCCC--EEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEc
Confidence 45689999984 45555555 455668888876554433233455788898887765543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.35 E-value=2.9e-05 Score=75.95 Aligned_cols=267 Identities=11% Similarity=0.026 Sum_probs=140.5
Q ss_pred ccceEEeeCCCCceEEEEecCCC----CCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeec
Q 005093 43 TGASAVVPSPSGSKLLVVRNPEN----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 117 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~ 117 (715)
.....|+|.|||+ |+++..... ...+++.+. .++.... +..+.... ..+...++.|+|||+.|+.. ..
T Consensus 18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~-~~~~~~~~----~~g~P~Gl~~~~dg~~l~va-d~ 90 (314)
T d1pjxa_ 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNG----YGGIPAGCQCDRDANQLFVA-DM 90 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETT----EECCEEEEEECSSSSEEEEE-ET
T ss_pred CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEE-EECCcccc----CCCcceeEEEeCCCCEEEEE-EC
Confidence 4566789999997 555543321 123577777 4444333 32211110 00112578999999876553 21
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCC---ccceEEEecC
Q 005093 118 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL---SVGQVVWAPL 194 (715)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~---~~~~~~~spd 194 (715)
...|.+++++++....+....... ...+.++.||
T Consensus 91 -------------------------------------------~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~ 127 (314)
T d1pjxa_ 91 -------------------------------------------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE 127 (314)
T ss_dssp -------------------------------------------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTT
T ss_pred -------------------------------------------CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCC
Confidence 145888998877655542111111 2456889999
Q ss_pred CCCCccEEEEEeecCccc-eeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCccccceeEcCCCC
Q 005093 195 NEGLHQYLVFVGWSSETR-KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 273 (715)
Q Consensus 195 g~~~~~~i~~~~~~~~~~-~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~ 273 (715)
|+ |+++....... .............||+++. .++...+..........+|+||++
T Consensus 128 G~-----lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~------------------dg~~~~~~~~~~~pNGi~~~~d~d 184 (314)
T d1pjxa_ 128 GN-----LWITAPAGEVAPADYTRSMQEKFGSIYCFTT------------------DGQMIQVDTAFQFPNGIAVRHMND 184 (314)
T ss_dssp SC-----EEEEECBCBCTTSCCCBTTSSSCEEEEEECT------------------TSCEEEEEEEESSEEEEEEEECTT
T ss_pred CC-----EEEecCccCcccccccceeccCCceEEEEee------------------cCceeEeeCCcceeeeeEECCCCC
Confidence 96 77764211100 0000000113346888884 344444443333345678999875
Q ss_pred ----eEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccccCCCEEEE
Q 005093 274 ----FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 349 (715)
Q Consensus 274 ----~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~ 349 (715)
+|++.... ...|+++++...+. +. ...+.. ....... ..+..+++..+|+ ||+
T Consensus 185 ~~~~~lyv~d~~----------~~~i~~~d~~~~g~--~~--~~~~~~--~~~~~~~------~~pdGiavD~~Gn-lyV 241 (314)
T d1pjxa_ 185 GRPYQLIVAETP----------TKKLWSYDIKGPAK--IE--NKKVWG--HIPGTHE------GGADGMDFDEDNN-LLV 241 (314)
T ss_dssp SCEEEEEEEETT----------TTEEEEEEEEETTE--EE--EEEEEE--ECCCCSS------CEEEEEEEBTTCC-EEE
T ss_pred cceeEEEEEeec----------ccceEEeeccCccc--cc--eeeEEE--Ecccccc------ccceeeEEecCCc-EEE
Confidence 45444333 24688888765332 11 001100 0000000 0123456777887 665
Q ss_pred EeeeCCeeEEEEEECCCCcEEE-ecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 005093 350 SSIWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 410 (715)
Q Consensus 350 ~~~~~~~~~l~~~d~~tg~~~~-l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~ 410 (715)
+.. +..+|+++|+++++... +...........|.++++.|+++.+.. ..|+++++.
T Consensus 242 a~~--~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~---g~i~~~~~~ 298 (314)
T d1pjxa_ 242 ANW--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN---NAVWKFEWQ 298 (314)
T ss_dssp EEE--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT---TEEEEEECS
T ss_pred EEc--CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC---CcEEEEECC
Confidence 433 33589999998887543 433322234467777888887766433 468887753
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.33 E-value=3.3e-06 Score=83.31 Aligned_cols=133 Identities=12% Similarity=0.099 Sum_probs=81.8
Q ss_pred cCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhh
Q 005093 160 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 239 (715)
Q Consensus 160 ~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 239 (715)
....|.+||+.+++..... ......+..++|+|||+. |+..+ .+..|..+++
T Consensus 204 ~d~~v~i~d~~~~~~~~~~-~~h~~~i~~v~~~p~~~~----l~s~s---------------~d~~i~~~~~-------- 255 (340)
T d1tbga_ 204 CDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNA----FATGS---------------DDATCRLFDL-------- 255 (340)
T ss_dssp TTTEEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET--------
T ss_pred cCceEEEEECCCCcEEEEE-eCCCCCeEEEEECCCCCE----EEEEe---------------CCCeEEEEee--------
Confidence 3478999999988765431 233446778999999986 66544 2235777776
Q ss_pred hhhhhccCCCCCCc-eecC--CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeee
Q 005093 240 ELELKESSSEDLPV-VNLT--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 316 (715)
Q Consensus 240 ~~~~~~~~~~~~~~-~~lt--~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~ 316 (715)
..... ..+. .....+....|+|||+.|+..+.+. .|+++|+.+++.....
T Consensus 256 ---------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg-----------~i~iwd~~~~~~~~~~------- 308 (340)
T d1tbga_ 256 ---------RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF-----------NCNVWDALKADRAGVL------- 308 (340)
T ss_dssp ---------TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTS-----------CEEEEETTTCCEEEEE-------
T ss_pred ---------cccccccccccccccCceEEEEECCCCCEEEEEECCC-----------EEEEEECCCCcEEEEE-------
Confidence 33322 2222 2233577899999999887655442 4888898765431110
Q ss_pred eceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 005093 317 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 360 (715)
Q Consensus 317 ~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~ 360 (715)
.+ +...+..++|+||++.| ++...++...||
T Consensus 309 -----------~~-H~~~V~~l~~s~d~~~l-~s~s~Dg~v~iW 339 (340)
T d1tbga_ 309 -----------AG-HDNRVSCLGVTDDGMAV-ATGSWDSFLKIW 339 (340)
T ss_dssp -----------CC-CSSCEEEEEECTTSSCE-EEEETTSCEEEE
T ss_pred -----------cC-CCCCEEEEEEeCCCCEE-EEEccCCEEEEe
Confidence 00 11234567899999855 555555555554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.29 E-value=7.2e-05 Score=74.83 Aligned_cols=31 Identities=6% Similarity=-0.273 Sum_probs=23.0
Q ss_pred CCCcccc-CCCEEEEEeeeCCeeEEEEEECCC
Q 005093 336 LSNPWLS-DGCTMLLSSIWGSSQVIISVNVSS 366 (715)
Q Consensus 336 ~~~~~~~-dg~~l~~~~~~~~~~~l~~~d~~t 366 (715)
..+.++| +|++|++.....+...+|+++-++
T Consensus 312 ~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 4566787 889888877677777888887654
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=3e-06 Score=79.88 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=65.7
Q ss_pred CCCCCcEEEEEcCCCCC-CCCccchHHHHHHHhC--CcEEEEEcCCCCCCCchhh-hhcCCCCCCccchhhHHHHHHHHH
Q 005093 477 DCSCDPLIVVLHGGPHS-VSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEA-LQSLPGKVGSQDVNDVLTAIDHVI 552 (715)
Q Consensus 477 ~~~~~P~vv~iHGg~~~-~~~~~~~~~~~~la~~--G~~vi~~d~rG~~~~g~~~-~~~~~~~~~~~~~~d~~~~i~~l~ 552 (715)
+..+.| ||++||-+.+ .....+......+.++ |+.|+++++.. ...+. .... ...+.+..+.+...+
T Consensus 2 p~~P~P-VVLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~---~~~~~~~~~~-----~~~~~~~~e~v~~~I 72 (279)
T d1ei9a_ 2 PPAPLP-LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGK---TLREDVENSF-----FLNVNSQVTTVCQIL 72 (279)
T ss_dssp TTSSCC-EEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSS---SHHHHHHHHH-----HSCHHHHHHHHHHHH
T ss_pred cCCCCc-EEEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCC---Ccccccccch-----hhhHHHHHHHHHHHH
Confidence 344566 7789994433 2233556666666655 99999999754 11111 0000 112444444443333
Q ss_pred HcCCCCCceEEEEEeChhHHHHHHHHhhCCC-ceeEEEecCCc
Q 005093 553 DMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPL 594 (715)
Q Consensus 553 ~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~ 594 (715)
+......++|.++|||+||.++-.++.+.+. .+..+|.+++.
T Consensus 73 ~~~~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgsP 115 (279)
T d1ei9a_ 73 AKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQ 115 (279)
T ss_dssp HSCGGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESCC
T ss_pred HhccccccceeEEEEccccHHHHHHHHHcCCCCcceEEEECCC
Confidence 3321234689999999999999999988875 47777776653
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=98.14 E-value=1e-06 Score=85.28 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=72.3
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHH-HHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~-~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
+...|++|++||.........+..+.. +|....+.|+++|++..... .+..+. .+ .......+..+|++|.+...
T Consensus 67 ~~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~--~Y~~a~-~n-~~~Vg~~ia~~i~~l~~~~g 142 (337)
T d1rp1a2 67 QTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQT--SYTQAA-NN-VRVVGAQVAQMLSMLSANYS 142 (337)
T ss_dssp CTTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHSS--CHHHHH-HH-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccCc--chHHHH-HH-HHHHHHHHHHHHHHHHHhcC
Confidence 356899999999654433223333343 45666799999998642110 000000 00 00113456677777777656
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcch
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 596 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~ 596 (715)
++.++|.|+|||+||++|..++.+ ...+..++.+.|...
T Consensus 143 ~~~~~vhlIGhSLGAhvAG~aG~~-~~~l~rItgLDPA~P 181 (337)
T d1rp1a2 143 YSPSQVQLIGHSLGAHVAGEAGSR-TPGLGRITGLDPVEA 181 (337)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHT-STTCCEEEEESCCCT
T ss_pred CChhheEEEeecHHHhhhHHHHHh-hccccceeccCCCcc
Confidence 889999999999999999866654 456777777777543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.12 E-value=0.00083 Score=58.02 Aligned_cols=250 Identities=11% Similarity=0.112 Sum_probs=145.6
Q ss_pred CccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCe--EEEEecC--CccEEEEecCccccccccCCCcccceee
Q 005093 29 NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI--QFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISW 104 (715)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~w 104 (715)
+.+.||.+|. .....|..+- .++.|+++-.++..+ +|..... |+..++ ..+..+ .-++-
T Consensus 47 ~~vkLtkePI----~~~~~Pk~~l--dfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i-~spk~v----------RI~S~ 109 (313)
T d2hu7a1 47 ETVKLNREPI----NSVLDPHYGV--GRVILVRDVSKGAEQHALFKVNTSRPGEEQRL-EAVKPM----------RILSG 109 (313)
T ss_dssp SCEECCSSCC----SEECEECTTB--SEEEEEEECSTTSCCEEEEEEETTSTTCEEEC-TTSCSB----------EEEEE
T ss_pred EEEEEecccc----cCcCCCccCc--ceEEEEeehhcCcceeeEEEEccCCCCeeeEe-cCCceE----------EEEEe
Confidence 4577887774 3345555444 488999887654443 4544422 443332 222222 45667
Q ss_pred cCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEeecCCCCCC
Q 005093 105 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL 184 (715)
Q Consensus 105 SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~ 184 (715)
.-|++.++|.... ....+++-+++|+.+.|.. .
T Consensus 110 ~yddk~vvF~Gas-------------------------------------------ed~~~LYviegGklrkL~~----v 142 (313)
T d2hu7a1 110 VDTGEAVVFTGAT-------------------------------------------EDRVALYALDGGGLRELAR----L 142 (313)
T ss_dssp EECSSCEEEEEEC-------------------------------------------SSCEEEEEEETTEEEEEEE----E
T ss_pred eecCceEEEeccc-------------------------------------------CCceEEEEEeCCceeeecc----C
Confidence 7799999997432 1334445556899888831 1
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCceecCCCCcccc
Q 005093 185 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 264 (715)
Q Consensus 185 ~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 264 (715)
+...+.=.-.|+. |+=.+.-. .+...++..|+ .+|..+.+|..+++..
T Consensus 143 PpFsFVtDI~~d~----I~G~g~~~-----------g~~~sfF~adl-----------------~SG~lri~tpkeGS~~ 190 (313)
T d2hu7a1 143 PGFGFVSDIRGDL----IAGLGFFG-----------GGRVSLFTSNL-----------------SSGGLRVFDSGEGSFS 190 (313)
T ss_dssp SSCEEEEEEETTE----EEEEEEEE-----------TTEEEEEEEET-----------------TTEEEEEECCSSEEEE
T ss_pred CCcceEEeccCCe----EEEEeeec-----------CCcceEEEEec-----------------ccCCEEEecCCCCccc
Confidence 1222222224555 55443222 23346889997 7899999999999999
Q ss_pred ceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCc---cc
Q 005093 265 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP---WL 341 (715)
Q Consensus 265 ~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~ 341 (715)
.+..+++.|-+. ...+ .+...+..+|+..+...++..... +| +......+. +.
T Consensus 191 ~ay~~~gnKV~s--dyEt-------~gEsywit~D~~s~~yerve~P~k------------d~---~sy~p~~I~~~~Y~ 246 (313)
T d2hu7a1 191 SASISPGMKVTA--GLET-------AREARLVTVDPRDGSVEDLELPSK------------DF---SSYRPTAITWLGYL 246 (313)
T ss_dssp EEEECTTSCEEE--EEEE-------SSCEEEEEECTTTCCEEECCCSSC------------HH---HHHCCSEEEEEEEC
T ss_pred ceeEccCceeee--ccCC-------CCceEEEEEecccCceeeeecCcc------------cc---eeecceEEEeeeeC
Confidence 999999877522 2111 111223366887766533321111 11 111122233 57
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEE
Q 005093 342 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 407 (715)
Q Consensus 342 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~ 407 (715)
||++ +++.+..+|..+|+. .|+. +....+.+ .....-++.++++.++..+|+.|...
T Consensus 247 Pdd~-L~iiakrdG~s~lF~----nGk~--in~p~G~~--~gat~i~~~iyfshsSL~tP~kI~~~ 303 (313)
T d2hu7a1 247 PDGR-LAVVARREGRSAVFI----DGER--VEAPQGNH--GRVVLWRGKLVTSHTSLSTPPRIVSL 303 (313)
T ss_dssp TTSC-EEEEEEETTEEEEEE----TTEE--ECCCSSEE--EEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CCCc-EEEEEecCCchheee----cceE--ecCCCCcc--cceEEECCEEEEeecccCCCceeEEc
Confidence 8987 555566678888873 3543 33444422 34556688999999999999988753
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.08 E-value=1.7e-06 Score=83.60 Aligned_cols=114 Identities=11% Similarity=-0.002 Sum_probs=73.8
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHH-HHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHHHHHHHcCC
Q 005093 478 CSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 556 (715)
Q Consensus 478 ~~~~P~vv~iHGg~~~~~~~~~~~~~~-~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 556 (715)
+...|++|++||............+.. +|....+.|+++|+...... .+..+.. +. ...-..+..+|++|.....
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~~--~Y~~a~~-n~-~~Vg~~ia~~i~~l~~~~g 142 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT--EYTQASY-NT-RVVGAEIAFLVQVLSTEMG 142 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHSS--CHHHHHH-HH-HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhccc--chHHHHH-hH-HHHHHHHHHHHHHHHHhcC
Confidence 457899999999544433323333333 55667799999998642111 0100000 00 0012344566777766555
Q ss_pred CCCceEEEEEeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 005093 557 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 595 (715)
Q Consensus 557 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 595 (715)
++.+++.|+|||+||++|..+..+.+.++..++.+.|..
T Consensus 143 ~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~ 181 (338)
T d1bu8a2 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (338)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence 889999999999999999999887777788888777754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.94 E-value=2.8e-05 Score=78.49 Aligned_cols=190 Identities=12% Similarity=0.020 Sum_probs=96.0
Q ss_pred CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccc---eeeeeeeecC-CceEEEEecccccc
Q 005093 161 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR---KLGIKYCYNR-PCALYAVRVSLYKS 236 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~---~~g~~~~~~~-~~~i~~~~~~~~~~ 236 (715)
...|-++|+++++..++...+.......++++|||++ ++........- ..|..+.... ...+-.+|.
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t----~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~----- 163 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT----NYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA----- 163 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC----CEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET-----
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE----EEEEeccCCcccccCcccccccccccceEEeecC-----
Confidence 3789999999998776531333445667899999998 54433211100 0000000011 012334554
Q ss_pred hhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeee
Q 005093 237 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 316 (715)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~ 316 (715)
++.+...-..-.+......++|||++++.++...+ .+..++..+.... +.+
T Consensus 164 ------------~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse----------~~~~id~~t~~~~-------d~i 214 (441)
T d1qnia2 164 ------------ETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSE----------RAVDLAGTMRNDR-------DWV 214 (441)
T ss_dssp ------------TTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTT----------CCSSHHHHTCSSB-------CEE
T ss_pred ------------ccceeeEEEecCCCccceEECCCCCEEEEEecCCC----------ceEEEeccCcceE-------EEE
Confidence 44433221122345678999999999887776642 1222333332221 011
Q ss_pred eceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE-CCCC-cEEEecCCCCCceeEEEeecCCEEEEE
Q 005093 317 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN-VSSG-ELLRITPAESNFSWSLLTLDGDNIIAV 394 (715)
Q Consensus 317 ~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d-~~tg-~~~~l~~~~~~~~~~~~s~~~~~l~~~ 394 (715)
.+... ......++||+++++ .+. ....++ ..+. ....|..+... ....+++||+.+++.
T Consensus 215 ~v~n~-------------p~~~~~~~dGk~~~v----~~~-~v~vvd~~~~~~v~~~IPvgksP-hGv~vSPDGkyl~~~ 275 (441)
T d1qnia2 215 VVFNV-------------ERIAAAVKAGNFKTI----GDS-KVPVVDGRGESEFTRYIPVPKNP-HGLNTSPDGKYFIAN 275 (441)
T ss_dssp EEEEH-------------HHHHHHHHTTCCBCC----TTC-CCCEEECSSSCSSEEEECCBSSC-CCEEECTTSCEEEEE
T ss_pred EeCCc-------------cceEEEecCCCEEEe----CCC-CcEEEEcccCCceEEEEeCCCCc-cCceECCCCCEEEEe
Confidence 11000 112346778885433 122 223334 3333 34455444443 346889999977765
Q ss_pred EeCCCCCCeEEEEeec
Q 005093 395 SSSPVDVPQVKYGYFV 410 (715)
Q Consensus 395 ~~~~~~p~~l~~~~~~ 410 (715)
. ...+.+-++++.
T Consensus 276 ~---~~~~tvsv~d~~ 288 (441)
T d1qnia2 276 G---KLSPTVSVIAID 288 (441)
T ss_dssp C---TTSSBEEEEEGG
T ss_pred C---CcCCcEEEEEee
Confidence 3 333447777764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.92 E-value=0.00087 Score=65.31 Aligned_cols=170 Identities=12% Similarity=0.085 Sum_probs=92.8
Q ss_pred CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhh
Q 005093 161 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 240 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (715)
...+.+||+.+++..... ...........|+|+++. ++... .+..|.++|+
T Consensus 180 d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~---------------~d~~i~i~d~--------- 230 (355)
T d1nexb2 180 DNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKR----CISAS---------------MDTTIRIWDL--------- 230 (355)
T ss_dssp TSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTE----EEEEE---------------TTSCEEEEET---------
T ss_pred cceeeeeecccccceeee-ecccccccccccccccee----eeccc---------------ccceEEeeec---------
Confidence 367889999888765442 233445667889999987 66554 2235778886
Q ss_pred hhhhccCCCCCC-ceecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 241 LELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 241 ~~~~~~~~~~~~-~~~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
.++. ...+......+....|+ ++.|+..+.+ ..|.++|+.+.... +..
T Consensus 231 --------~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~d-----------g~i~iwd~~~~~~~-~~~--------- 279 (355)
T d1nexb2 231 --------ENGELMYTLQGHTALVGLLRLS--DKFLVSAAAD-----------GSIRGWDANDYSRK-FSY--------- 279 (355)
T ss_dssp --------TTCCEEEEECCCSSCCCEEEEC--SSEEEEECTT-----------SEEEEEETTTCCEE-EEE---------
T ss_pred --------cccccccccccccccccccccc--cceeeeeecc-----------ccccccccccccee-ccc---------
Confidence 4443 34455555566666765 4666655543 24888887664321 110
Q ss_pred ecCCCCCccccccCCCCCC-ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe--cCCCCCceeEEEeecCCEEEEEEe
Q 005093 320 QCAEGDCFPGLYSSSILSN-PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI--TPAESNFSWSLLTLDGDNIIAVSS 396 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~-~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l--~~~~~~~~~~~~s~~~~~l~~~~~ 396 (715)
+....... .++++++ ++.+.. ++ .|..+|+++|+.... ..... .+..++.+++.++++.+
T Consensus 280 -----------~~~~~~~~~~~~~~~~-~l~~g~-d~--~i~vwd~~tg~~~~~~~~~~~~--~V~~v~~~~~~~~~~~s 342 (355)
T d1nexb2 280 -----------HHTNLSAITTFYVSDN-ILVSGS-EN--QFNIYNLRSGKLVHANILKDAD--QIWSVNFKGKTLVAAVE 342 (355)
T ss_dssp -----------ECTTCCCCCEEEECSS-EEEEEE-TT--EEEEEETTTCCBCCSCTTTTCS--EEEEEEEETTEEEEEEE
T ss_pred -----------ccCCceEEEEEcCCCC-EEEEEe-CC--EEEEEECCCCCEEEEEecCCCC--CEEEEEEcCCeEEEEEE
Confidence 00122233 3566766 555544 33 577789998886532 22222 22233334556554443
Q ss_pred CCCCCCeEEEEe
Q 005093 397 SPVDVPQVKYGY 408 (715)
Q Consensus 397 ~~~~p~~l~~~~ 408 (715)
. +..-.|+..|
T Consensus 343 ~-dg~~~l~~~d 353 (355)
T d1nexb2 343 K-DGQSFLEILD 353 (355)
T ss_dssp S-SSCEEEEEEE
T ss_pred C-CCcEEEEEEe
Confidence 3 3322344444
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.87 E-value=0.00062 Score=64.78 Aligned_cols=144 Identities=10% Similarity=-0.021 Sum_probs=73.7
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..+.+|++.+.+............+..++|+|||+. |+... .+..|..+|+
T Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~g~---------------~dg~i~i~d~---------- 191 (287)
T d1pgua2 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY----IAAGD---------------VMGKILLYDL---------- 191 (287)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET----------
T ss_pred ceeeeeeccccceeeeeeeccCCceeEEEeccCccc----ccccc---------------ccccccceee----------
Confidence 457888876554433211233345778999999986 66543 2236778886
Q ss_pred hhhccCCCCCCce--ecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeece
Q 005093 242 ELKESSSEDLPVV--NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 319 (715)
Q Consensus 242 ~~~~~~~~~~~~~--~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~ 319 (715)
..+... .+..+...+...+|+|+++............. .......|+++|+...... +. ..
T Consensus 192 -------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~-sgs~D~~i~iw~~~~~~~~-~~--------~~ 254 (287)
T d1pgua2 192 -------QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA-TGSLDTNIFIYSVKRPMKI-IK--------AL 254 (287)
T ss_dssp -------TTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEE-EEETTSCEEEEESSCTTCC-EE--------ET
T ss_pred -------cccccccccccccccccceeeecccccccccccCCCCeeE-eecCCCeEEEEECCCCCeE-EE--------Ee
Confidence 433322 23334455777888887754333222211000 0011235888887653321 10 00
Q ss_pred ecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 005093 320 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 362 (715)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~ 362 (715)
..+...+..+.|++++. +++...++..+||.+
T Consensus 255 ---------~~h~~~V~~v~~~~~~~--l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 255 ---------NAHKDGVNNLLWETPST--LVSSGADACIKRWNV 286 (287)
T ss_dssp ---------TSSTTCEEEEEEEETTE--EEEEETTSCEEEEEE
T ss_pred ---------CCCCCCeEEEEECCCCE--EEEEECCCeEEEEEE
Confidence 00112455678998874 455555666777754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.84 E-value=7.7e-06 Score=82.71 Aligned_cols=109 Identities=10% Similarity=0.078 Sum_probs=63.3
Q ss_pred eCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 005093 50 PSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 128 (715)
Q Consensus 50 ~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 128 (715)
.+|||++|+ +.+. ....+..++ .+.+..+++.++... ...++++||||++++..+.....- + .
T Consensus 79 gtpDGr~lf-V~d~--~~~rVavIDl~t~k~~~ii~iP~g~--------gphgi~~spdg~t~YV~~~~~~~v-~---~- 142 (441)
T d1qnia2 79 GRYDGKYLF-INDK--ANTRVARIRLDIMKTDKITHIPNVQ--------AIHGLRLQKVPKTNYVFCNAEFVI-P---Q- 142 (441)
T ss_dssp TEEEEEEEE-EEET--TTTEEEEEETTTTEEEEEEECTTCC--------CEEEEEECCSSBCCEEEEEECSCE-E---S-
T ss_pred ccCCCCEEE-EEcC--CCCEEEEEECCCCcEeeEEecCCCC--------CccceEEeccCCEEEEEeccCCcc-c---c-
Confidence 479999984 5443 455788888 777777777764322 115899999999877654332110 0 0
Q ss_pred CCCCCCCCcCCCCCCCCCcccCCcCcccC-CccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 129 STKGGSSDKDCNSWKGQGDWEEDWGETYA-GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
.. + |..+. ......+-.+|.++.+...- .........+.++|||+.
T Consensus 143 -~~-------------------d-g~~~~~~~~~~~~~~iD~~t~~v~~q--I~v~~~p~~v~~spdGk~ 189 (441)
T d1qnia2 143 -PN-------------------D-GTDFSLDNSYTMFTAIDAETMDVAWQ--VIVDGNLDNTDADYTGKY 189 (441)
T ss_dssp -SC-------------------S-SSCCCGGGEEEEEEEEETTTCSEEEE--EEESSCCCCEEECSSSSE
T ss_pred -cC-------------------c-ccccccccccceEEeecCccceeeEE--EecCCCccceEECCCCCE
Confidence 00 0 11110 11224566688887765432 122234668899999996
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.80 E-value=0.0017 Score=60.97 Aligned_cols=181 Identities=8% Similarity=-0.059 Sum_probs=111.8
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|+..+++++..+.+. ...-.....+++..-++. |+++.. ....|.++++
T Consensus 58 ~~I~~~~l~g~~~~~v~-~~~~~~p~~iAvD~~~~~----lY~~d~--------------~~~~I~~~~~---------- 108 (263)
T d1npea_ 58 PSIGRASLHGGEPTTII-RQDLGSPEGIALDHLGRT----IFWTDS--------------QLDRIEVAKM---------- 108 (263)
T ss_dssp TEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTTTE----EEEEET--------------TTTEEEEEET----------
T ss_pred CeEEEEEcccCCcEEEE-EeccccccEEEEeccCCe----EEEecc--------------CCCEEEEEec----------
Confidence 67999999888777662 122123456666665666 776641 2347889997
Q ss_pred hhhccCCCCCCceecCCC-CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeecee
Q 005093 242 ELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 320 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~-~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 320 (715)
.+...+.+... .......+..|.+.+|+|+.... ....|+++++++...+.+....
T Consensus 109 -------dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~--------~~~~I~r~~~dG~~~~~i~~~~-------- 165 (263)
T d1npea_ 109 -------DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--------DNPKIETSHMDGTNRRILAQDN-------- 165 (263)
T ss_dssp -------TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--------SSCEEEEEETTSCCCEEEECTT--------
T ss_pred -------CCceEEEEecccccCCcEEEEecccCcEEEeecCC--------CCcEEEEecCCCCCceeeeeec--------
Confidence 55555444433 34567788999999898877542 1235999998875543322110
Q ss_pred cCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCC
Q 005093 321 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 400 (715)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~ 400 (715)
-. .+..++..+.++.||+.. .+...|.++|++++..+.+..... ....++.++++||.+..+
T Consensus 166 ----~~-------~P~glaiD~~~~~lYw~d--~~~~~I~~~~~~g~~~~~v~~~~~--~P~~lav~~~~lYwtd~~--- 227 (263)
T d1npea_ 166 ----LG-------LPNGLTFDAFSSQLCWVD--AGTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSYGKNLYYTDWK--- 227 (263)
T ss_dssp ----CS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTEEEEEEEEECCC--SEEEEEEETTEEEEEETT---
T ss_pred ----cc-------ccceEEEeecCcEEEEEe--CCCCEEEEEECCCCCeEEEECCCC--CcEEEEEECCEEEEEECC---
Confidence 00 112445666677788864 344689999998776666655433 223566678888877643
Q ss_pred CCeEEEEeeccc
Q 005093 401 VPQVKYGYFVDK 412 (715)
Q Consensus 401 p~~l~~~~~~~~ 412 (715)
...|++++..++
T Consensus 228 ~~~I~~~~~~~g 239 (263)
T d1npea_ 228 TNSVIAMDLAIS 239 (263)
T ss_dssp TTEEEEEETTTT
T ss_pred CCEEEEEECCCC
Confidence 335888886543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.006 Score=57.11 Aligned_cols=182 Identities=8% Similarity=-0.053 Sum_probs=107.8
Q ss_pred ceEEEEEccCCc----eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccch
Q 005093 162 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 237 (715)
Q Consensus 162 ~~l~~~~~~~g~----~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 237 (715)
..|+..++++.. .+.+. ...-.....+++-+-++. |+++.. ....|.++++
T Consensus 52 ~~I~~~~l~~~~~~~~~~~~~-~~~~~~p~glAvD~~~~~----lY~~d~--------------~~~~I~v~~~------ 106 (266)
T d1ijqa1 52 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 106 (266)
T ss_dssp TEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET------
T ss_pred CEEEEEEecCCCCCcceEEEE-eCCCCCcceEEEeeccce----EEEEec--------------CCCEEEeEec------
Confidence 557777775422 22221 222234556777777887 777641 2247999997
Q ss_pred hhhhhhhccCCCCCCceecCC-CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeee
Q 005093 238 ASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 316 (715)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~lt~-~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~ 316 (715)
.+.....+.. ........+..|...+|+|+.... ...|++.++++...+.+....
T Consensus 107 -----------~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~---------~~~I~r~~~dGs~~~~l~~~~---- 162 (266)
T d1ijqa1 107 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTEN---- 162 (266)
T ss_dssp -----------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCCEEEEECSS----
T ss_pred -----------CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCC---------CcceeEeccCCCceecccccc----
Confidence 5555444433 334567788889888888876432 246999998875543332110
Q ss_pred eceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCC-ceeEEEeecCCEEEEEE
Q 005093 317 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN-FSWSLLTLDGDNIIAVS 395 (715)
Q Consensus 317 ~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~-~~~~~~s~~~~~l~~~~ 395 (715)
.. .+..+++.+.++.||+.. .....|.++++++...+.+...... .....++.+++.|+++.
T Consensus 163 --------~~-------~p~gl~iD~~~~~lYw~d--~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td 225 (266)
T d1ijqa1 163 --------IQ-------WPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225 (266)
T ss_dssp --------CS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred --------cc-------eeeEEEeeccccEEEEec--CCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEE
Confidence 00 123455667777888864 3446899999987666665443331 22346777888888765
Q ss_pred eCCCCCCeEEEEeeccc
Q 005093 396 SSPVDVPQVKYGYFVDK 412 (715)
Q Consensus 396 ~~~~~p~~l~~~~~~~~ 412 (715)
. ....|++++..++
T Consensus 226 ~---~~~~I~~~~~~~g 239 (266)
T d1ijqa1 226 I---INEAIFSANRLTG 239 (266)
T ss_dssp T---TTTEEEEEETTTC
T ss_pred C---CCCeEEEEECCCC
Confidence 3 3457888876544
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.73 E-value=0.00013 Score=73.75 Aligned_cols=146 Identities=14% Similarity=0.072 Sum_probs=84.5
Q ss_pred ceEEeeCCCCceEEEEecCCCCCCeEEEEe--cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 005093 45 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 122 (715)
Q Consensus 45 ~~~~~~Spdg~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 122 (715)
+...+||||| .||-...+ ....+| ..++............ .-..++..++|||||+.|+..+.+.
T Consensus 187 ~~~v~~s~dg-~lasgs~D-----g~i~iwd~~~~~~~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~sgs~D~---- 253 (393)
T d1sq9a_ 187 ATSVDISERG-LIATGFNN-----GTVQISELSTLRPLYNFESQHSMI---NNSNSIRSVKFSPQGSLLAIAHDSN---- 253 (393)
T ss_dssp CCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEEEEEECCC------CCCCCEEEEEECSSTTEEEEEEEET----
T ss_pred EEEEEECCCC-EEEEEeCC-----CcEEEEeecccccccccccccccc---cccceEEEcccccccceeeeecCCC----
Confidence 5678999998 55433222 234556 3444433333211110 0012347899999999998876543
Q ss_pred CCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCceEe-ecCC-----------CCCCccceEE
Q 005093 123 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGI-----------PKSLSVGQVV 190 (715)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-l~~~-----------~~~~~~~~~~ 190 (715)
....|.+||+++++... +... .....+..++
T Consensus 254 -------------------------------------t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~ 296 (393)
T d1sq9a_ 254 -------------------------------------SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296 (393)
T ss_dssp -------------------------------------TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred -------------------------------------CcceeeecccccceeeeeeccccccccceeeeecccCceeeec
Confidence 12458889998876443 2100 0122467899
Q ss_pred EecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc-eecCCCCcc----ccc
Q 005093 191 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISS----AFF 265 (715)
Q Consensus 191 ~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~----~~~ 265 (715)
|||||+. |+-.+ .+..|.++|+ ++++. ..+..+... ...
T Consensus 297 fspd~~~----l~S~s---------------~D~~v~vWd~-----------------~~g~~~~~l~gH~~~v~~~~~~ 340 (393)
T d1sq9a_ 297 FNDSGET----LCSAG---------------WDGKLRFWDV-----------------KTKERITTLNMHCDDIEIEEDI 340 (393)
T ss_dssp ECSSSSE----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECCGGGCSSGGGC
T ss_pred cCCCCCe----eEEEC---------------CCCEEEEEEC-----------------CCCCEEEEECCcCCcccCCccE
Confidence 9999986 66544 3346888887 55543 345444332 345
Q ss_pred eeEcCCCCeEE
Q 005093 266 PRFSPDGKFLV 276 (715)
Q Consensus 266 ~~~spdg~~l~ 276 (715)
+.|+|+|+.++
T Consensus 341 ~~~~~~~~~~~ 351 (393)
T d1sq9a_ 341 LAVDEHGDSLA 351 (393)
T ss_dssp CCBCTTSCBCS
T ss_pred EEECCCCCEEE
Confidence 88999998763
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.66 E-value=0.00049 Score=67.05 Aligned_cols=144 Identities=9% Similarity=0.068 Sum_probs=83.2
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|+.+++++++..... .........++++|||+ |+.+..... .....|+.++.
T Consensus 61 g~I~ri~p~g~~~~~~~-~~~~~~p~gla~~~dG~-----l~va~~~~~----------~~~~~i~~~~~---------- 114 (319)
T d2dg1a1 61 GNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGR-----LFVCYLGDF----------KSTGGIFAATE---------- 114 (319)
T ss_dssp CEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSC-----EEEEECTTS----------SSCCEEEEECT----------
T ss_pred CEEEEEECCCCeEEEEE-eCCCCCeeEEEECCCCC-----EEEEecCCC----------ccceeEEEEcC----------
Confidence 67999999888654431 23333456789999997 444331110 12235777775
Q ss_pred hhhccCCCCCCceecCCCC---ccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeec
Q 005093 242 ELKESSSEDLPVVNLTESI---SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 318 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~~---~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~ 318 (715)
.++....+.... .......+.|||+ |++...... .......+++++.+++....+....
T Consensus 115 -------~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~----~~~~~g~v~~~~~dg~~~~~~~~~~------ 176 (319)
T d2dg1a1 115 -------NGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGY----STNPLGGVYYVSPDFRTVTPIIQNI------ 176 (319)
T ss_dssp -------TSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCB----TTBCCEEEEEECTTSCCEEEEEEEE------
T ss_pred -------CCceeeeeccCCCcccCCcceeEEeccc-eeecccccc----cccCcceeEEEecccceeEEEeecc------
Confidence 555554443321 2356688999997 766654421 1122346888876654432221110
Q ss_pred eecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 005093 319 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 365 (715)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~ 365 (715)
.....++|++|++.||++... ..+|++++++
T Consensus 177 --------------~~pnGia~s~dg~~lyvad~~--~~~I~~~d~~ 207 (319)
T d2dg1a1 177 --------------SVANGIALSTDEKVLWVTETT--ANRLHRIALE 207 (319)
T ss_dssp --------------SSEEEEEECTTSSEEEEEEGG--GTEEEEEEEC
T ss_pred --------------ceeeeeeeccccceEEEeccc--CCceEEEEEc
Confidence 022457899999988876543 3477877764
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.0021 Score=60.32 Aligned_cols=184 Identities=8% Similarity=0.081 Sum_probs=108.5
Q ss_pred EEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCC--ccEEEEecCccccccc
Q 005093 17 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS--QLEKEFHVPQTVHGSV 93 (715)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~ 93 (715)
.|..+++++... ..+.. ....+....+.+..++|.++... ...++... ++. .....+-...+..
T Consensus 11 ~I~~~~l~~~~~--~~~~~-----~~~~~~~id~d~~~~~lYw~D~~---~~~I~~~~l~~~~~~~~~~~~~~~~~~--- 77 (266)
T d1ijqa1 11 EVRKMTLDRSEY--TSLIP-----NLRNVVALDTEVASNRIYWSDLS---QRMICSTQLDRAHGVSSYDTVISRDIQ--- 77 (266)
T ss_dssp SEEEEETTSCCC--EEEEC-----SCSSEEEEEEETTTTEEEEEETT---TTEEEEEEC--------CEEEECSSCS---
T ss_pred eEEEEECCCCcc--eeeeC-----CCCceEEEEEEeCCCEEEEEECC---CCEEEEEEecCCCCCcceEEEEeCCCC---
Confidence 367777765432 33322 23556777888889999776432 23566554 221 1111111112210
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCc
Q 005093 94 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 173 (715)
Q Consensus 94 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 173 (715)
...+++.-+-++.|++. +. ....|.+.++++..
T Consensus 78 ----~p~glAvD~~~~~lY~~-d~------------------------------------------~~~~I~v~~~~g~~ 110 (266)
T d1ijqa1 78 ----APDGLAVDWIHSNIYWT-DS------------------------------------------VLGTVSVADTKGVK 110 (266)
T ss_dssp ----CCCEEEEETTTTEEEEE-ET------------------------------------------TTTEEEEEETTSSS
T ss_pred ----CcceEEEeeccceEEEE-ec------------------------------------------CCCEEEeEecCCce
Confidence 12577777778888774 21 12679999998887
Q ss_pred eEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCc
Q 005093 174 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 253 (715)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (715)
.+.+. .........++..|.... |+++.+. ....|+++++ .+...
T Consensus 111 ~~~~~-~~~~~~P~~l~vd~~~g~----ly~~~~~-------------~~~~I~r~~~-----------------dGs~~ 155 (266)
T d1ijqa1 111 RKTLF-RENGSKPRAIVVDPVHGF----MYWTDWG-------------TPAKIKKGGL-----------------NGVDI 155 (266)
T ss_dssp EEEEE-ECTTCCEEEEEEETTTTE----EEEEECS-------------SSCEEEEEET-----------------TSCCE
T ss_pred EEEEE-cCCCCCcceEEEEcccCe----EEEeccC-------------CCcceeEecc-----------------CCCce
Confidence 66552 222234556778886654 6655421 2247999997 55555
Q ss_pred eecCCC-CccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 254 VNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 254 ~~lt~~-~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
+.+... .......++.+.+++|+|+.... ..|..+++.+...
T Consensus 156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~----------~~I~~~~~dG~~~ 198 (266)
T d1ijqa1 156 YSLVTENIQWPNGITLDLLSGRLYWVDSKL----------HSISSIDVNGGNR 198 (266)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTT----------TEEEEEETTSCSC
T ss_pred ecccccccceeeEEEeeccccEEEEecCCc----------CEEEEEECCCCCE
Confidence 555433 34567789999999999987553 3689999877543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.64 E-value=0.00095 Score=67.01 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=57.2
Q ss_pred cCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCC-cccceeeeeeceecCCCCCccccccCC
Q 005093 256 LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSS 334 (715)
Q Consensus 256 lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~~~~g~~~~~ 334 (715)
+..+...+..++|||||+.|+-.+.+.. ...+.++|+.+++... +....... . ....+.| +...
T Consensus 227 l~~h~~~V~~l~~spdg~~l~sgs~D~t--------~~~i~lwd~~~g~~~~~l~~~~~~~-~-----~~~~~~g-H~~~ 291 (393)
T d1sq9a_ 227 MINNSNSIRSVKFSPQGSLLAIAHDSNS--------FGCITLYETEFGERIGSLSVPTHSS-Q-----ASLGEFA-HSSW 291 (393)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETT--------EEEEEEEETTTCCEEEEECBC--------------CCBS-BSSC
T ss_pred cccccceEEEcccccccceeeeecCCCC--------cceeeecccccceeeeeeccccccc-c-----ceeeeec-ccCc
Confidence 3344556888999999999987776531 2246677887765421 11110000 0 0001111 2334
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 005093 335 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
+..++|+|||+ ++++...++ .|..+|+++|+......
T Consensus 292 V~~l~fspd~~-~l~S~s~D~--~v~vWd~~~g~~~~~l~ 328 (393)
T d1sq9a_ 292 VMSLSFNDSGE-TLCSAGWDG--KLRFWDVKTKERITTLN 328 (393)
T ss_dssp EEEEEECSSSS-EEEEEETTS--EEEEEETTTTEEEEEEE
T ss_pred eeeeccCCCCC-eeEEECCCC--EEEEEECCCCCEEEEEC
Confidence 56788999998 456666555 45556888888766543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.62 E-value=0.0011 Score=62.96 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=50.8
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|.+||+.+++.....-......+..++|+|+++. ......... +......+..|+++|+.
T Consensus 184 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~~~~~~~~~-----~l~sgs~D~~i~iw~~~--------- 245 (287)
T d1pgua2 184 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG----ANEEEIEED-----LVATGSLDTNIFIYSVK--------- 245 (287)
T ss_dssp SCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----------CCSCC-----EEEEEETTSCEEEEESS---------
T ss_pred ccccceeecccccccccccccccccceeeecccccc----cccccCCCC-----eeEeecCCCeEEEEECC---------
Confidence 568999998887543210222345778899998764 332221100 11111233468888861
Q ss_pred hhhccCCCCC-CceecCCCCccccceeEcCCCCeEEEEecC
Q 005093 242 ELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAK 281 (715)
Q Consensus 242 ~~~~~~~~~~-~~~~lt~~~~~~~~~~~spdg~~l~~~~~~ 281 (715)
..+ ....+..+...+....|+||++ |+-.+.+
T Consensus 246 -------~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D 278 (287)
T d1pgua2 246 -------RPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD 278 (287)
T ss_dssp -------CTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred -------CCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECC
Confidence 223 3344555666789999999874 6544443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.55 E-value=0.0011 Score=64.70 Aligned_cols=119 Identities=9% Similarity=-0.019 Sum_probs=64.4
Q ss_pred ecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCC
Q 005093 255 NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 334 (715)
Q Consensus 255 ~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~ 334 (715)
.............|+|+++.++..+.+. .|.++++.++........ +...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----------~i~i~d~~~~~~~~~~~~-------------------h~~~ 245 (355)
T d1nexb2 196 ILSGHTDRIYSTIYDHERKRCISASMDT-----------TIRIWDLENGELMYTLQG-------------------HTAL 245 (355)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEETTS-----------CEEEEETTTCCEEEEECC-------------------CSSC
T ss_pred eeeccccccccccccccceeeecccccc-----------eEEeeecccccccccccc-------------------cccc
Confidence 3444455677889999999888776553 377888776543111000 1112
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 005093 335 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 413 (715)
Q Consensus 335 ~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~~~ 413 (715)
+..+.|+ ++. +++...++ .|..+|+.++................+++++. +++..+. ..|.+.++.+++
T Consensus 246 v~~~~~~--~~~-l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~d----~~i~vwd~~tg~ 314 (355)
T d1nexb2 246 VGLLRLS--DKF-LVSAAADG--SIRGWDANDYSRKFSYHHTNLSAITTFYVSDN-ILVSGSE----NQFNIYNLRSGK 314 (355)
T ss_dssp CCEEEEC--SSE-EEEECTTS--EEEEEETTTCCEEEEEECTTCCCCCEEEECSS-EEEEEET----TEEEEEETTTCC
T ss_pred ccccccc--cce-eeeeeccc--ccccccccccceecccccCCceEEEEEcCCCC-EEEEEeC----CEEEEEECCCCC
Confidence 3334454 454 44444444 46666887776554433333233334555554 4444432 257777776553
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.48 E-value=0.0015 Score=62.60 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=81.0
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|+.+|+++++.+... .......+.+.+||+ +++... ..|+++|.
T Consensus 40 ~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~-----l~va~~----------------~gl~~~d~---------- 85 (295)
T d2ghsa1 40 RELHELHLASGRKTVHA---LPFMGSALAKISDSK-----QLIASD----------------DGLFLRDT---------- 85 (295)
T ss_dssp TEEEEEETTTTEEEEEE---CSSCEEEEEEEETTE-----EEEEET----------------TEEEEEET----------
T ss_pred CEEEEEECCCCeEEEEE---CCCCcEEEEEecCCC-----EEEEEe----------------CccEEeec----------
Confidence 67999999999887652 223456677888886 444431 25889997
Q ss_pred hhhccCCCCCCceecCCCCc-----cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeee
Q 005093 242 ELKESSSEDLPVVNLTESIS-----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 316 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~~~-----~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~ 316 (715)
++++.+.+..... ...+..+.|+|+ |+|.+...... .....+|.++ .++...+..+.
T Consensus 86 -------~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~----~~~g~l~~~~--~g~~~~~~~~~---- 147 (295)
T d2ghsa1 86 -------ATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAE----TGAGSIYHVA--KGKVTKLFADI---- 147 (295)
T ss_dssp -------TTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCC----TTCEEEEEEE--TTEEEEEEEEE----
T ss_pred -------ccceeeEEeeeecCCCcccceeeEECCCCC-EEEEecccccc----ccceeEeeec--CCcEEEEeecc----
Confidence 7777776654322 356778899997 66666543211 2233456553 33332221110
Q ss_pred eceecCCCCCccccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 005093 317 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 365 (715)
Q Consensus 317 ~~~~~~~~~~~~g~~~~~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~ 365 (715)
.....+.|++|++.++++... ...||+++++
T Consensus 148 ----------------~~~Ng~~~s~d~~~l~~~dt~--~~~I~~~~~d 178 (295)
T d2ghsa1 148 ----------------SIPNSICFSPDGTTGYFVDTK--VNRLMRVPLD 178 (295)
T ss_dssp ----------------SSEEEEEECTTSCEEEEEETT--TCEEEEEEBC
T ss_pred ----------------CCcceeeecCCCceEEEeecc--cceeeEeeec
Confidence 012356799999988886554 3467777653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.48 E-value=0.017 Score=53.80 Aligned_cols=235 Identities=9% Similarity=0.050 Sum_probs=131.8
Q ss_pred EEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCcccccccc
Q 005093 16 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVY 94 (715)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 94 (715)
..|..+++++........ ...+......+...++-+..++|.+... ....++.+. +++..+.+... +..
T Consensus 10 ~~I~~~~ld~~~~~~~~~-~~~~~~~~~~~~~ld~D~~~~~iywsd~---~~~~I~~~~l~g~~~~~v~~~--~~~---- 79 (263)
T d1npea_ 10 GKIERLPLERNTMKKTEA-KAFLHIPAKVIIGLAFDCVDKVVYWTDI---SEPSIGRASLHGGEPTTIIRQ--DLG---- 79 (263)
T ss_dssp EEEEEEEESSSCBCGGGC-EEEEEEEEEEEEEEEEETTTTEEEEEET---TTTEEEEEESSSCCCEEEECT--TCC----
T ss_pred CeEEEEECCCcccccccc-ccccccCCCcEEEEEEEeCCCEEEEEEC---CCCeEEEEEcccCCcEEEEEe--ccc----
Confidence 467777776554321111 0011111123445667777888866533 234577777 55555544432 110
Q ss_pred CCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce
Q 005093 95 ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV 174 (715)
Q Consensus 95 ~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 174 (715)
...+++...-+++|++.-. ....|.+.++++...
T Consensus 80 ---~p~~iAvD~~~~~lY~~d~-------------------------------------------~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 80 ---SPEGIALDHLGRTIFWTDS-------------------------------------------QLDRIEVAKMDGTQR 113 (263)
T ss_dssp ---CEEEEEEETTTTEEEEEET-------------------------------------------TTTEEEEEETTSCSC
T ss_pred ---cccEEEEeccCCeEEEecc-------------------------------------------CCCEEEEEecCCceE
Confidence 1146666666777776421 126789999988776
Q ss_pred EeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhhhhhccCCCCCCce
Q 005093 175 QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV 254 (715)
Q Consensus 175 ~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (715)
+.+. ...-.....++..|.... |+++.+.. ....|+++++ ++...+
T Consensus 114 ~~l~-~~~l~~p~~l~vdp~~g~----ly~t~~~~------------~~~~I~r~~~-----------------dG~~~~ 159 (263)
T d1npea_ 114 RVLF-DTGLVNPRGIVTDPVRGN----LYWTDWNR------------DNPKIETSHM-----------------DGTNRR 159 (263)
T ss_dssp EEEE-CSSCSSEEEEEEETTTTE----EEEEECCS------------SSCEEEEEET-----------------TSCCCE
T ss_pred EEEe-cccccCCcEEEEecccCc----EEEeecCC------------CCcEEEEecC-----------------CCCCce
Confidence 6552 122234567788887765 66664211 1236999997 555545
Q ss_pred ecCC-CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccC
Q 005093 255 NLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 333 (715)
Q Consensus 255 ~lt~-~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~ 333 (715)
.+.. ........++.+.+++|+|+.... ..|.++++.+...+.+..+. ..
T Consensus 160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~----------~~I~~~~~~g~~~~~v~~~~-------------~~------ 210 (263)
T d1npea_ 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGT----------HRAECLNPAQPGRRKVLEGL-------------QY------ 210 (263)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTT----------TEEEEEETTEEEEEEEEECC-------------CS------
T ss_pred eeeeecccccceEEEeecCcEEEEEeCCC----------CEEEEEECCCCCeEEEECCC-------------CC------
Confidence 5443 334456788899999999987543 35888888764432221110 00
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 005093 334 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 374 (715)
Q Consensus 334 ~~~~~~~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 374 (715)
+..++. ++..||++.. +...|+++|..+|+...+..
T Consensus 211 -P~~lav--~~~~lYwtd~--~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 211 -PFAVTS--YGKNLYYTDW--KTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp -EEEEEE--ETTEEEEEET--TTTEEEEEETTTTEEEEEEC
T ss_pred -cEEEEE--ECCEEEEEEC--CCCEEEEEECCCCccceEEC
Confidence 112222 4556777643 34579999998888766543
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.39 E-value=0.00016 Score=71.28 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=50.9
Q ss_pred CCCCcEEEEEcC-CCCCC---C-Cccch----HHHHHHHhCCcEEEEEcCCCCCCCchhhhhcCCCCCCccchhhHHHHH
Q 005093 478 CSCDPLIVVLHG-GPHSV---S-LSSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI 548 (715)
Q Consensus 478 ~~~~P~vv~iHG-g~~~~---~-~~~~~----~~~~~la~~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~~~~~d~~~~i 548 (715)
..++| ||++|| .++.. . ...|. ...+.|.+.|+.|+++.... ++.... -.+++...|
T Consensus 5 ~~~yP-IVLvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~p---~~S~~~----------RA~eL~~~I 70 (388)
T d1ku0a_ 5 ANDAP-IVLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGP---LSSNWD----------RACEAYAQL 70 (388)
T ss_dssp CCCCC-EEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCCS---SBCHHH----------HHHHHHHHH
T ss_pred CCCCC-EEEeCCcccCCccccCcccccCCchhhhHHHHHhCCCEEEEeccCC---ccCHHH----------HHHHHHHHH
Confidence 45688 788999 33321 1 12333 26778999999999998654 211110 022222222
Q ss_pred HHHHHcC-----------------------CCCCceEEEEEeChhHHHHHHHHhh
Q 005093 549 DHVIDMG-----------------------LANPSKVTVVGGSHGGFLTTHLIGQ 580 (715)
Q Consensus 549 ~~l~~~~-----------------------~~d~~~i~l~G~S~GG~~a~~~a~~ 580 (715)
+-..... +-...||.|+||||||.-+-+++..
T Consensus 71 ~~~~~d~G~~hs~~~~~~~~~r~y~g~~~~~~~~~kVnLIgHS~GGld~Ryl~~~ 125 (388)
T d1ku0a_ 71 VGGTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRVHIIAHSQGGQTARMLVSL 125 (388)
T ss_dssp HCEEEECCHHHHHHHTSCSEEEEECCSCGGGGGTCCEEEEEETTHHHHHHHHHHH
T ss_pred hhhhhhhhHhHHhhhcccccCccCcccccccccCCceeEeecccccHHHHHHHHH
Confidence 2110000 0123589999999999988887764
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.32 E-value=0.015 Score=55.38 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=31.6
Q ss_pred ccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCC
Q 005093 43 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET 109 (715)
Q Consensus 43 ~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~ 109 (715)
+.....+++|||+. + +.+..++.-..+... ..+....+...+... ....+.+.+||+
T Consensus 68 ~~~~gla~~~dG~l-~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~n~i~~~~~g~ 125 (302)
T d2p4oa1 68 GKVSGLAFTSNGDL-V-ATGWNADSIPVVSLVKSDGTVETLLTLPDAI--------FLNGITPLSDTQ 125 (302)
T ss_dssp SEEEEEEECTTSCE-E-EEEECTTSCEEEEEECTTSCEEEEEECTTCS--------CEEEEEESSSSE
T ss_pred CCcceEEEcCCCCe-E-EEecCCceEEEEEecccccceeeccccCCcc--------ccceeEEccCCC
Confidence 55778899999983 3 333221322233333 345555555543322 236788999984
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.16 E-value=0.012 Score=50.60 Aligned_cols=178 Identities=19% Similarity=0.198 Sum_probs=108.1
Q ss_pred ccccccccccceEEEEEEEeecCCCCccccccCCCccccccceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEE
Q 005093 4 ISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF 83 (715)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (715)
+=.+|++..+.+-.|+..++...++ ..++.. |-+ -++...+ -|++.++|+...+ +...+|.+ ++|+.++++
T Consensus 70 ~f~RDV~kGkE~Hai~~~Nlk~~GE-E~~i~s-pk~---vRI~S~~--yddk~vvF~Gase-d~~~LYvi-egGklrkL~ 140 (313)
T d2hu7a1 70 ILVRDVSKGAEQHALFKVNTSRPGE-EQRLEA-VKP---MRILSGV--DTGEAVVFTGATE-DRVALYAL-DGGGLRELA 140 (313)
T ss_dssp EEEEECSTTSCCEEEEEEETTSTTC-EEECTT-SCS---BEEEEEE--ECSSCEEEEEECS-SCEEEEEE-ETTEEEEEE
T ss_pred EEEeehhcCcceeeEEEEccCCCCe-eeEecC-Cce---EEEEEee--ecCceEEEecccC-CceEEEEE-eCCceeeec
Confidence 3346777778888888877765553 233322 100 1334444 4999999997765 44455555 667888888
Q ss_pred ecCccccccccCCCcccceeecC--CCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccC
Q 005093 84 HVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQ 161 (715)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~wSp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 161 (715)
.++. ++|-- .|++|+=+.-.. | ..
T Consensus 141 ~vPp--------------FsFVtDI~~d~I~G~g~~~----------------------------------g------~~ 166 (313)
T d2hu7a1 141 RLPG--------------FGFVSDIRGDLIAGLGFFG----------------------------------G------GR 166 (313)
T ss_dssp EESS--------------CEEEEEEETTEEEEEEEEE----------------------------------T------TE
T ss_pred cCCC--------------cceEEeccCCeEEEEeeec----------------------------------C------Cc
Confidence 7642 22222 356665443211 1 23
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..+|+.|+.+|+++.+ ++++.+...+.++|+.+ + ++.-. ..+...+..+|+
T Consensus 167 ~sfF~adl~SG~lri~--tpkeGS~~~ay~~~gnK-----V--~sdyE----------t~gEsywit~D~---------- 217 (313)
T d2hu7a1 167 VSLFTSNLSSGGLRVF--DSGEGSFSSASISPGMK-----V--TAGLE----------TAREARLVTVDP---------- 217 (313)
T ss_dssp EEEEEEETTTEEEEEE--CCSSEEEEEEEECTTSC-----E--EEEEE----------ESSCEEEEEECT----------
T ss_pred ceEEEEecccCCEEEe--cCCCCcccceeEccCce-----e--eeccC----------CCCceEEEEEec----------
Confidence 5699999999999999 78888888888998776 5 22111 112223446786
Q ss_pred hhhccCCCCCCceecCCCCcc--------ccceeEcCCCCeEEEEec
Q 005093 242 ELKESSSEDLPVVNLTESISS--------AFFPRFSPDGKFLVFLSA 280 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt~~~~~--------~~~~~~spdg~~l~~~~~ 280 (715)
+++..+++.-+... +...-+.||++-++.+..
T Consensus 218 -------~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakr 257 (313)
T d2hu7a1 218 -------RDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR 257 (313)
T ss_dssp -------TTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred -------ccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEec
Confidence 88888887655432 222337899985444443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.0093 Score=57.15 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=33.2
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCC-----CCceeEEEeecCCEEEEEE-eCCCCCCeEEEEeec
Q 005093 340 WLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAE-----SNFSWSLLTLDGDNIIAVS-SSPVDVPQVKYGYFV 410 (715)
Q Consensus 340 ~~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~-----~~~~~~~~s~~~~~l~~~~-~~~~~p~~l~~~~~~ 410 (715)
+..+++ ++++...++ .|..+|+.+|+..+ +.... ..+....+++++. ++++. .+.+.-..|++.|++
T Consensus 266 ~~~~~~-~~~s~s~Dg--~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 266 LQFNKN-FVITSSDDG--TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEECSS-EEEEEETTS--EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECC
T ss_pred cccCCC-eeEEEcCCC--EEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCC
Confidence 344565 445555444 56667888887643 32211 1223345555543 33333 233334556666653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.08 E-value=0.036 Score=52.96 Aligned_cols=98 Identities=13% Similarity=0.281 Sum_probs=58.7
Q ss_pred ceEEEEEccC-CceEe---ecCCCC--CCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEeccccc
Q 005093 162 PSLFVININS-GEVQA---VKGIPK--SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 235 (715)
Q Consensus 162 ~~l~~~~~~~-g~~~~---l~~~~~--~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 235 (715)
..|+.++++. +.... ....+. ......+++.++|+ |+.+.+ ....|+++|.
T Consensus 198 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-----lyVa~~--------------~~g~I~~~dp---- 254 (314)
T d1pjxa_ 198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-----LLVANW--------------GSSHIEVFGP---- 254 (314)
T ss_dssp TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-----EEEEEE--------------TTTEEEEECT----
T ss_pred cceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-----EEEEEc--------------CCCEEEEEeC----
Confidence 6688887753 33211 100111 11234577888886 544432 2347999995
Q ss_pred chhhhhhhhccCCCCCCce-ecCCCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCC
Q 005093 236 SEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 305 (715)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 305 (715)
+++... .+..+.......+|.||+++|+.+.... ..|++++++..+.
T Consensus 255 -------------~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~----------g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 255 -------------DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN----------NAVWKFEWQRNGK 302 (314)
T ss_dssp -------------TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT----------TEEEEEECSSCBC
T ss_pred -------------CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC----------CcEEEEECCCCCh
Confidence 656543 3444444567799999999887766543 3699999876554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.01 E-value=0.057 Score=49.85 Aligned_cols=79 Identities=5% Similarity=0.017 Sum_probs=43.4
Q ss_pred cccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCCCCCCcccceeeeeeceecCCCCCccccccCCCCCCccc
Q 005093 262 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 341 (715)
Q Consensus 262 ~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 341 (715)
.....+++|+|+ ++++... ...|++++.++.....+... .+. .+..+++.
T Consensus 141 ~p~~i~~~~~g~-~~v~~~~----------~~~i~~~d~~~~~~~~~~~~--------------~~~-----~p~gi~~d 190 (260)
T d1rwia_ 141 DPDGVAVDNSGN-VYVTDTD----------NNRVVKLEAESNNQVVLPFT--------------DIT-----APWGIAVD 190 (260)
T ss_dssp SCCEEEECTTCC-EEEEEGG----------GTEEEEECTTTCCEEECCCS--------------SCC-----SEEEEEEC
T ss_pred CcceeeecCCCC-Eeeeccc----------cccccccccccceeeeeecc--------------ccC-----CCccceee
Confidence 356678899997 5544433 23588888665433211100 000 12345567
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 005093 342 SDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 373 (715)
Q Consensus 342 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 373 (715)
++|+ ||++. ....+|++++..++....+.
T Consensus 191 ~~g~-l~vsd--~~~~~i~~~~~~~~~~~~~~ 219 (260)
T d1rwia_ 191 EAGT-VYVTE--HNTNQVVKLLAGSTTSTVLP 219 (260)
T ss_dssp TTCC-EEEEE--TTTTEEEEECTTCSCCEECC
T ss_pred eeee-eeeee--cCCCEEEEEeCCCCeEEEEc
Confidence 7876 65543 33457888887665554443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.015 Score=55.67 Aligned_cols=98 Identities=11% Similarity=0.025 Sum_probs=57.3
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..|++||+...+..............-..++++++. ++..+ .+..|.++|+
T Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~s---------------~Dg~i~iwd~---------- 287 (342)
T d2ovrb2 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF----VITSS---------------DDGTVKLWDL---------- 287 (342)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSE----EEEEE---------------TTSEEEEEET----------
T ss_pred CEEEEEecccccccccccccceeeeceeecccCCCe----eEEEc---------------CCCEEEEEEC----------
Confidence 569999998876544311112222333455666665 55443 2236888887
Q ss_pred hhhccCCCCCCc-eecCC-----CCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCC
Q 005093 242 ELKESSSEDLPV-VNLTE-----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 302 (715)
Q Consensus 242 ~~~~~~~~~~~~-~~lt~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~ 302 (715)
++++. +.+.. ....+...+|||||..|+..+.+. .....|+++|++.
T Consensus 288 -------~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG-------t~~~~l~~~Df~~ 340 (342)
T d2ovrb2 288 -------KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG-------TEETKLLVLDFDV 340 (342)
T ss_dssp -------TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS-------SSCCEEEEEECCC
T ss_pred -------CCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC-------CCeeEEEEEeCCC
Confidence 55543 33321 123478899999998776665442 2234688888764
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.66 E-value=0.013 Score=55.96 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=41.2
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCCCcccCCcCcccCCccCceEEEEEccCCce-Eeec
Q 005093 100 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVK 178 (715)
Q Consensus 100 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~l~ 178 (715)
..++|||||++||..+.+ ..|.+||++++.. ..+.
T Consensus 15 ~~l~fsp~~~~L~s~s~D--------------------------------------------g~v~iwd~~~~~~~~~~~ 50 (342)
T d1yfqa_ 15 SDIKIIPSKSLLLITSWD--------------------------------------------GSLTVYKFDIQAKNVDLL 50 (342)
T ss_dssp EEEEEEGGGTEEEEEETT--------------------------------------------SEEEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCEEEEEECC--------------------------------------------CeEEEEEccCCCcceEEE
Confidence 899999999998876432 5688999876542 2221
Q ss_pred -CCCCCCccceEEEecCCCCCccEEEEEee
Q 005093 179 -GIPKSLSVGQVVWAPLNEGLHQYLVFVGW 207 (715)
Q Consensus 179 -~~~~~~~~~~~~~spdg~~~~~~i~~~~~ 207 (715)
.......+..++|+|++.. +++++.
T Consensus 51 ~~~~h~~~V~~v~f~~~~~~----~l~sg~ 76 (342)
T d1yfqa_ 51 QSLRYKHPLLCCNFIDNTDL----QIYVGT 76 (342)
T ss_dssp EEEECSSCEEEEEEEESSSE----EEEEEE
T ss_pred EecCCCCCEEEEEEeCCCCC----EEEEcc
Confidence 0123346778999998877 777663
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.0063 Score=62.11 Aligned_cols=131 Identities=19% Similarity=0.200 Sum_probs=77.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHH------------------HHHhCCcEEEEEcCCCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLA------------------FLSSVGYSLLIVNYRGSL 522 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~------------------~la~~G~~vi~~d~rG~~ 522 (715)
++..+.-|++...+ .....|++|++-|||+.+.. +..+.+ -+. +-..++.+|.+-..
T Consensus 30 ~~~~lffw~~~s~~--~~~~~Pl~~wlnGGPG~SS~--~g~~~e~GP~~v~~~~~~~~~N~~SW~-~~anllfIDqPvGt 104 (452)
T d1ivya_ 30 GSKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSL--DGLLTEHGPFLVQPDGVTLEYNPYSWN-LIANVLYLESPAGV 104 (452)
T ss_dssp TTEEEEEEEECCSS--CGGGSCEEEEECCTTTBCTH--HHHHTTTSSEEECTTSSCEEECTTCGG-GSSEEEEECCSTTS
T ss_pred CCceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHH--HHHHHccCCcEEcCCCCeeccCCcchh-cccCEEEEecCCCc
Confidence 35567777775442 33568999999999986532 111100 011 11568888976444
Q ss_pred CCchhhhhcCCCCCCccchhhHHHHH-HHHHHcCCCCCceEEEEEeChhHHHHHHHHhh----CCCceeEEEecCCcchh
Q 005093 523 GFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPLCNL 597 (715)
Q Consensus 523 ~~g~~~~~~~~~~~~~~~~~d~~~~i-~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~----~p~~~~~~v~~~~~~~~ 597 (715)
||......... ........|+.+++ +++...+.....++.|+|.|+||..+-.+|.. ..-.++++++.+|+.+.
T Consensus 105 GfS~~~~~~~~-~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng~~d~ 183 (452)
T d1ivya_ 105 GFSYSDDKFYA-TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSY 183 (452)
T ss_dssp TTCEESSCCCC-CBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCCSBH
T ss_pred ccccCCCCCCC-CCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCCccCc
Confidence 45432211101 11111244555555 34444444556799999999999988877643 22358999999998764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.36 E-value=0.1 Score=47.98 Aligned_cols=94 Identities=9% Similarity=0.023 Sum_probs=53.4
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCccceeeeeeeecCCceEEEEecccccchhhhh
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 241 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (715)
..+++++..+....... ...-.....++++|+|+ ++++.. ....|+.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----~~v~~~--------------~~~~i~~~d~---------- 168 (260)
T d1rwia_ 119 NRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGN-----VYVTDT--------------DNNRVVKLEA---------- 168 (260)
T ss_dssp TEEEEECTTCSSCEECC-CCSCCSCCEEEECTTCC-----EEEEEG--------------GGTEEEEECT----------
T ss_pred ccccccccccceeeeee-ecccCCcceeeecCCCC-----Eeeecc--------------cccccccccc----------
Confidence 55777777665544441 12222345678888886 555432 2246888885
Q ss_pred hhhccCCCCCCceecC-CCCccccceeEcCCCCeEEEEecCCCCCCCCccccceeEeeecCCC
Q 005093 242 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 303 (715)
Q Consensus 242 ~~~~~~~~~~~~~~lt-~~~~~~~~~~~spdg~~l~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 303 (715)
++.....+. ........++++++|+ |+++... ...|++++..+.
T Consensus 169 -------~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~----------~~~i~~~~~~~~ 213 (260)
T d1rwia_ 169 -------ESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHN----------TNQVVKLLAGST 213 (260)
T ss_dssp -------TTCCEEECCCSSCCSEEEEEECTTCC-EEEEETT----------TTEEEEECTTCS
T ss_pred -------ccceeeeeeccccCCCccceeeeeee-eeeeecC----------CCEEEEEeCCCC
Confidence 444433333 2334466788999986 6444433 235787775543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.39 E-value=0.029 Score=54.59 Aligned_cols=113 Identities=8% Similarity=-0.000 Sum_probs=64.1
Q ss_pred CCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 005093 51 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 129 (715)
Q Consensus 51 Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~ 129 (715)
.+||++|. +.+. .+..+..|+ +.-+..+++..+... .+.+++.+++++..+.++..... .+ .
T Consensus 96 tyDGrylF-VNDk--an~RVAvIdl~~fkt~kIi~iPn~~--------~~HG~r~~~~p~T~YV~~~~e~~-vP-----~ 158 (459)
T d1fwxa2 96 KYDGRFLF-MNDK--ANTRVARVRCDVMKCDAILEIPNAK--------GIHGLRPQKWPRSNYVFCNGEDE-TP-----L 158 (459)
T ss_dssp EEEEEEEE-EEET--TTTEEEEEETTTTEEEEEEECSSCC--------SEEEEEECCSSBCSEEEEEECSC-EE-----S
T ss_pred ccceeEEE-EEcC--CCceEEEEECcceeeeEEEecCCCC--------CCceeecccCCCeEEEEccCccc-cc-----c
Confidence 35898875 4343 567899999 666777777765432 11467777777766555432211 00 0
Q ss_pred CCCCCCCcCCCCCCCCCcccCCcCcccCC--ccCceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEe
Q 005093 130 TKGGSSDKDCNSWKGQGDWEEDWGETYAG--KRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 206 (715)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~ 206 (715)
.+. |..+.+ +....+.++|.++.+...- ...+.......++|||+. +++++
T Consensus 159 pnd--------------------g~~l~d~~~y~~~~t~ID~~tm~V~~Q--V~V~g~ld~~~~s~dGK~----af~Ts 211 (459)
T d1fwxa2 159 VND--------------------GTNMEDVANYVNVFTAVDADKWEVAWQ--VLVSGNLDNCDADYEGKW----AFSTS 211 (459)
T ss_dssp SCS--------------------SSSTTCGG-EEEEEEEEETTTTEEEEE--EEESSCCCCEEECSSSSE----EEEEE
T ss_pred CCC--------------------CccccchhhcceEEEEEecCCceEEEE--eeeCCChhccccCCCCCE----EEEEe
Confidence 011 111111 1224567899988876432 112224557899999996 66655
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=95.33 E-value=0.054 Score=55.18 Aligned_cols=131 Identities=17% Similarity=0.169 Sum_probs=71.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCC--------------------cEEEEEcCCC
Q 005093 461 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG--------------------YSLLIVNYRG 520 (715)
Q Consensus 461 ~g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G--------------------~~vi~~d~rG 520 (715)
.+..+.-|++...........|+||++-|||+.+... ..|.+.| ..++.+|.+-
T Consensus 47 ~~~~~ffw~fe~~~~~~~~~~Pl~lWlnGGPGcSS~~------g~f~E~GP~~v~~~~~l~~Np~SWn~~an~lfIDqPv 120 (483)
T d1ac5a_ 47 SDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD------GALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPT 120 (483)
T ss_dssp CCCEEEEEEEECSCSGGGSSCCEEEEECCTTTBCTHH------HHHHSSSSEEECTTSCEEECTTCGGGTSEEEEECCST
T ss_pred CcceEEEEEEEecCCCCCCCCCEEEEECCCCcHHHHH------HHHHccCCeEECCCCceeeCCCcccccCCEEEEeCCC
Confidence 3445555666443221223469999999999875321 1122222 5788889765
Q ss_pred CCCCchhhhhc-C--CCCCCccc----hhhHHHHHH-HHHHcCCCCCceEEEEEeChhHHHHHHHHhhC-----------
Q 005093 521 SLGFGEEALQS-L--PGKVGSQD----VNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----------- 581 (715)
Q Consensus 521 ~~~~g~~~~~~-~--~~~~~~~~----~~d~~~~i~-~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~----------- 581 (715)
..||....... . .......+ ..++..++. |+...+.....++.|+|.|+||..+-.+|..-
T Consensus 121 GvGfSy~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~ 200 (483)
T d1ac5a_ 121 GTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDG 200 (483)
T ss_dssp TSTTCSSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred CcCeeecCCCCccccccccccCCHHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCC
Confidence 44454221100 0 00011111 223333332 33333444567999999999999887776431
Q ss_pred -CCceeEEEecCCcchh
Q 005093 582 -PDKFVAAAARNPLCNL 597 (715)
Q Consensus 582 -p~~~~~~v~~~~~~~~ 597 (715)
+-.++++++..|+.+.
T Consensus 201 ~~inLkGi~IGNg~~d~ 217 (483)
T d1ac5a_ 201 DTYDLKALLIGNGWIDP 217 (483)
T ss_dssp SCCEEEEEEEEEECCCH
T ss_pred CcccceeeeecCCccCh
Confidence 1248888888887654
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.29 E-value=0.063 Score=53.64 Aligned_cols=126 Identities=19% Similarity=0.239 Sum_probs=74.7
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHhCC--------------------cEEEEEcCCCC
Q 005093 462 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG--------------------YSLLIVNYRGS 521 (715)
Q Consensus 462 g~~l~~~l~~P~~~~~~~~~P~vv~iHGg~~~~~~~~~~~~~~~la~~G--------------------~~vi~~d~rG~ 521 (715)
+..+.-|++...+ ...+.|+||++-|||+.+.. + ..|.+.| ..++.+|.+-.
T Consensus 27 ~~~lfyw~~~s~~--~~~~~Pl~~WlnGGPG~SS~--~----g~~~e~GP~~i~~~~~~~~N~~sW~~~anllfiD~PvG 98 (421)
T d1wpxa1 27 DKHFFFWTFESRN--DPAKDPVILWLNGGPGCSSL--T----GLFFELGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVN 98 (421)
T ss_dssp CCEEEEEEECCSS--CTTTSCEEEEECCTTTBCTH--H----HHHHTTSSEEECTTSCEEECTTCGGGSSEEEEECCSTT
T ss_pred CceEEEEEEEeCC--CCCCCCEEEEECCCCcHHHH--H----HHHHhcCCcEECCCCccccCCcccccccCEEEEecCCC
Confidence 3457767665432 34567999999999987532 1 1122221 57888896644
Q ss_pred CCCchhhhhcCCCCCCccchhhHHHHHHHHHHc-CCC--CCceEEEEEeChhHHHHHHHHhh---CC---CceeEEEecC
Q 005093 522 LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLA--NPSKVTVVGGSHGGFLTTHLIGQ---AP---DKFVAAAARN 592 (715)
Q Consensus 522 ~~~g~~~~~~~~~~~~~~~~~d~~~~i~~l~~~-~~~--d~~~i~l~G~S~GG~~a~~~a~~---~p---~~~~~~v~~~ 592 (715)
.||....... .........|+.+++....+. +.. ...++.|+|.|+||..+-.+|.+ .. -.++++++.+
T Consensus 99 tGfSy~~~~~--~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGn 176 (421)
T d1wpxa1 99 VGFSYSGSSG--VSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGN 176 (421)
T ss_dssp STTCBCSSCC--CCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEES
T ss_pred CCceecCCcc--ccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecC
Confidence 4454321111 111111244555555544443 222 34689999999999988877642 12 2478999999
Q ss_pred Ccchh
Q 005093 593 PLCNL 597 (715)
Q Consensus 593 ~~~~~ 597 (715)
|+.+.
T Consensus 177 g~~dp 181 (421)
T d1wpxa1 177 GLTDP 181 (421)
T ss_dssp CCCCH
T ss_pred Ccccc
Confidence 98774
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.86 E-value=1.4 Score=40.27 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=22.1
Q ss_pred cceEEeeCCCCceEEEEecCCCCCCeEEEEecCCccEEEE
Q 005093 44 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF 83 (715)
Q Consensus 44 ~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (715)
....++++|||+ +|+.+. .+..+..+...|+....+
T Consensus 24 ~P~gvavd~dg~--i~VaD~--~n~rI~v~d~~G~~~~~~ 59 (279)
T d1q7fa_ 24 EPSGVAVNAQND--IIVADT--NNHRIQIFDKEGRFKFQF 59 (279)
T ss_dssp CEEEEEECTTCC--EEEEEG--GGTEEEEECTTSCEEEEE
T ss_pred CccEEEEcCCCC--EEEEEC--CCCEEEEEeCCCCEEEEe
Confidence 356789999997 456554 334566666556544433
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.67 E-value=0.14 Score=49.66 Aligned_cols=102 Identities=16% Similarity=0.072 Sum_probs=55.9
Q ss_pred CceEEEEEccCCceEeecCCCCCCccceEEEecCCCCCccEEEEEeecCc-cc-eeeeeee--ecCCceEEEEecccccc
Q 005093 161 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE-TR-KLGIKYC--YNRPCALYAVRVSLYKS 236 (715)
Q Consensus 161 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~~~~~i~~~~~~~~-~~-~~g~~~~--~~~~~~i~~~~~~~~~~ 236 (715)
.+.|.++|+++-+..++...+.......++.+++++. +| ++...+.. +. ..|.... .+....+..+|.
T Consensus 109 n~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T--~Y-V~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~----- 180 (459)
T d1fwxa2 109 NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS--NY-VFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA----- 180 (459)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC--SE-EEEEECSCEESSCSSSSTTCGG-EEEEEEEEET-----
T ss_pred CceEEEEECcceeeeEEEecCCCCCCceeecccCCCe--EE-EEccCccccccCCCCccccchhhcceEEEEEec-----
Confidence 4889999999998877632333333445667778887 22 33322111 00 0010000 011123567785
Q ss_pred hhhhhhhhccCCCCCCceecCCCCccccceeEcCCCCeEEEEecCC
Q 005093 237 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 282 (715)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~spdg~~l~~~~~~~ 282 (715)
++.+...-..-.+......+||||+++++++.+.
T Consensus 181 ------------~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNS 214 (459)
T d1fwxa2 181 ------------DKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNS 214 (459)
T ss_dssp ------------TTTEEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred ------------CCceEEEEeeeCCChhccccCCCCCEEEEEeccc
Confidence 5544432222234567789999999999888654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=1.6 Score=39.19 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=32.3
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 005093 341 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 411 (715)
Q Consensus 341 ~~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~~~~~l~~~~~~~~~p~~l~~~~~~~ 411 (715)
..++..+ ++...++ .|..+|+.+++.......... ....++.++..|+..... ..|.+.++..
T Consensus 185 ~~~~~~l-~~~~~dg--~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~~d----g~i~iwd~~~ 247 (293)
T d1p22a2 185 QYRDRLV-VSGSSDN--TIRLWDIECGACLRVLEGHEE-LVRCIRFDNKRIVSGAYD----GKIKVWDLVA 247 (293)
T ss_dssp EEETTEE-EEEETTS--CEEEEETTTCCEEEEECCCSS-CEEEEECCSSEEEEEETT----SCEEEEEHHH
T ss_pred cCCCCeE-EEecCCC--EEEEEecccceeeeeecccce-eeeeccccceEEEEEcCC----CEEEEEECCC
Confidence 3345544 4444444 455568888777666554432 223456666655443321 2355556543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=3.7 Score=36.47 Aligned_cols=33 Identities=12% Similarity=-0.052 Sum_probs=19.8
Q ss_pred ceEEEEEccCCceEeecCCCCCCccceEEEecCCCC
Q 005093 162 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 197 (715)
Q Consensus 162 ~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~spdg~~ 197 (715)
..|.+||+++++....- ......+. .+++|++.
T Consensus 35 g~i~vWd~~~~~~~~~l-~~H~~~V~--~v~~~~~~ 67 (293)
T d1p22a2 35 NTIKIWDKNTLECKRIL-TGHTGSVL--CLQYDERV 67 (293)
T ss_dssp SCEEEEESSSCCEEEEE-CCCSSCEE--EEECCSSE
T ss_pred CeEEEEECCCCcEEEEE-ecCCCCEe--eeecccce
Confidence 56899999988765441 12222344 34567775
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=91.76 E-value=0.14 Score=46.99 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhh----CC----CceeEEEecCCcc
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----AP----DKFVAAAARNPLC 595 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~----~p----~~~~~~v~~~~~~ 595 (715)
..++...++.+++.. ...+|.+.|||+||.+|..++.. .| ..+......+|-+
T Consensus 116 ~~~i~~~v~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~l~~~~~~~~~~~i~~~tFG~Prv 176 (265)
T d1lgya_ 116 VNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFTVGGPRV 176 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHHHHHHHCTTCSTTTEEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhC--CCceEEEEecccchHHHHHHHHHHHHhCcccCCCcceEEEecCccc
Confidence 345556666555543 24689999999999999887753 22 2345555555543
|
| >d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Cutinase species: Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]
Probab=91.11 E-value=0.91 Score=39.04 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhCC----CceeEEEecC
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARN 592 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p----~~~~~~v~~~ 592 (715)
+.++.+.+....++ ....||+|+|+|.|+.++-.++...+ +++++++++.
T Consensus 79 ~~~~~~~i~~~a~~--CP~tkiVL~GYSQGA~V~~~~~~~l~~~~~~~V~avvlfG 132 (197)
T d1cexa_ 79 IREMLGLFQQANTK--CPDATLIAGGYSQGAALAAASIEDLDSAIRDKIAGTVLFG 132 (197)
T ss_dssp HHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHHHHSCHHHHTTEEEEEEES
T ss_pred HHHHHHHHHHHHhh--CCCCeEEEeeeccccHhhhcccccCChhhhhhEEEEEEEe
Confidence 45566666666555 44679999999999999988876543 4678877665
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=90.84 E-value=0.25 Score=45.07 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhh---CCCceeEEEecCCcc
Q 005093 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPLC 595 (715)
Q Consensus 542 ~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---~p~~~~~~v~~~~~~ 595 (715)
.++...+..+.++. ...+|.+.|||+||.+|..++.. ....++.....+|-+
T Consensus 109 ~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~~l~~~~~~~~~~tFG~Prv 163 (261)
T d1uwca_ 109 DQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRS 163 (261)
T ss_dssp HHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHHHHTTCSSEEEEEESCCCC
T ss_pred HHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHHHHHhcCCCcceEEecCccc
Confidence 45566666666653 34689999999999999987653 223455555556643
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=90.75 E-value=0.25 Score=45.23 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHh
Q 005093 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 579 (715)
Q Consensus 542 ~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 579 (715)
.++...+..+.++. ...+|.+.|||+||.+|..++.
T Consensus 116 ~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~ 151 (265)
T d3tgla_ 116 NELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCAL 151 (265)
T ss_dssp HHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHH
Confidence 44555555555543 3578999999999999998765
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=90.53 E-value=0.12 Score=47.70 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhh
Q 005093 541 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 580 (715)
Q Consensus 541 ~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 580 (715)
..++...++.+.++. ...+|.+.|||+||.+|..++..
T Consensus 120 ~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 120 RDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHHHH
Confidence 345566666655553 34689999999999999987764
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=90.30 E-value=0.16 Score=46.83 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHhhC---CCceeEEEecCCc
Q 005093 542 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPL 594 (715)
Q Consensus 542 ~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~ 594 (715)
+++...++.++++. ..-+|.+.|||+||.+|..++... ...++.....+|.
T Consensus 122 ~~v~~~v~~~~~~~--~~~~i~vtGHSLGGalA~l~a~~l~~~~~~i~~~tFG~Pr 175 (269)
T d1tiba_ 122 DTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPR 175 (269)
T ss_dssp HHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHTTSSSCEEEEEESCCC
T ss_pred HHHHHHHHHHHHhC--CCcceeeeccchHHHHHHHHHHHHHhccCcceEEEecCCC
Confidence 45566666665553 246999999999999999887642 2234444444443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.07 E-value=13 Score=36.26 Aligned_cols=62 Identities=13% Similarity=0.268 Sum_probs=36.0
Q ss_pred ccccceEEeeCCCCceEEEEecCCCCCCeEEEEe-cCCccEEEEecCccccccccCCCcccceeecCC
Q 005093 41 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD 107 (715)
Q Consensus 41 ~~~~~~~~~~Spdg~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wSpD 107 (715)
++......+|.|||+.+ ++.+. .-.++.+. .+++...+..++... ....+++.+.+++++||
T Consensus 25 ~L~~P~~la~~pdg~ll-Vter~---~G~i~~v~~~~g~~~~i~~~~~~~-~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 25 NLNKPHALLWGPDNQIW-LTERA---TGKILRVNPESGSVKTVFQVPEIV-NDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CCSSEEEEEECTTSCEE-EEETT---TCEEEEECTTTCCEEEEEECTTCC-CCTTSSCSEEEEEECTT
T ss_pred CCCCceEEEEeCCCeEE-EEEec---CCEEEEEECCCCcEeecccCCccc-cccCCCCceeeEEeCCC
Confidence 44567889999999643 34321 12577777 566666666553321 11122234457889986
|
| >d1qoza_ c.69.1.30 (A:) Acetylxylan esterase {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Acetylxylan esterase species: Trichoderma reesei [TaxId: 51453]
Probab=84.00 E-value=3 Score=36.01 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=38.3
Q ss_pred CCcEEEEEcCCCCCCCchhhhhcCCCCCCc---cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHh
Q 005093 509 VGYSLLIVNYRGSLGFGEEALQSLPGKVGS---QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 579 (715)
Q Consensus 509 ~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~---~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 579 (715)
.|..+..++|+...... ... ...+.. .-+.++.+.|....++ ....||+|+|+|.|+.++..++.
T Consensus 34 ~~~~~~~v~YPA~~~~~--~~~--~~~y~~S~~~G~~~~~~~i~~~~~~--CP~tkivl~GYSQGA~V~~~~l~ 101 (207)
T d1qoza_ 34 PGTTSEAIVYPACGGQA--SCG--GISYANSVVNGTNAAAAAINNFHNS--CPDTQLVLVGYSQGAQIFDNALC 101 (207)
T ss_dssp TTEEEEECCSCCCSSCG--GGT--TCCHHHHHHHHHHHHHHHHHHHHHH--CTTSEEEEEEETHHHHHHHHHHH
T ss_pred CCCeEEEeeeccccccc--ccc--cccchhhHHHHHHHHHHHHHHHHHh--CCCCeEEEEeeccchHHHHHHHh
Confidence 46777888888643210 000 001110 0134455555555554 44579999999999999988764
|
| >d1g66a_ c.69.1.30 (A:) Acetylxylan esterase {Penicillium purpurogenum [TaxId: 28575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Acetylxylan esterase species: Penicillium purpurogenum [TaxId: 28575]
Probab=80.48 E-value=5.5 Score=34.19 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCCCCCchhhhhcCCCCCCc---cchhhHHHHHHHHHHcCCCCCceEEEEEeChhHHHHHHHHh
Q 005093 509 VGYSLLIVNYRGSLGFGEEALQSLPGKVGS---QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 579 (715)
Q Consensus 509 ~G~~vi~~d~rG~~~~g~~~~~~~~~~~~~---~~~~d~~~~i~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 579 (715)
.|..+..++|+..... ... ....+.. .-+.++.+.|....++ ....|++|+|+|.|+.++..++.
T Consensus 34 ~~~~~~~v~YpA~~~~--~~~--~~~~y~~Sv~~G~~~~~~~i~~~~~~--CP~tk~vl~GYSQGA~V~~~~l~ 101 (207)
T d1g66a_ 34 PGSTAEAINYPACGGQ--SSC--GGASYSSSVAQGIAAVASAVNSFNSQ--CPSTKIVLVGYSQGGEIMDVALC 101 (207)
T ss_dssp TTCEEEECCCCCCSSC--GGG--TSCCHHHHHHHHHHHHHHHHHHHHHH--STTCEEEEEEETHHHHHHHHHHH
T ss_pred CCCeeEEecccccccc--ccc--ccccccccHHHHHHHHHHHHHHHHHh--CCCCcEEEEeeccccHHHHHHHh
Confidence 4667777888864321 100 0011111 0133444555444444 34579999999999999987764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=80.09 E-value=20 Score=31.92 Aligned_cols=16 Identities=6% Similarity=0.221 Sum_probs=11.3
Q ss_pred ccceeEcCCCCeEEEEe
Q 005093 263 AFFPRFSPDGKFLVFLS 279 (715)
Q Consensus 263 ~~~~~~spdg~~l~~~~ 279 (715)
....++.|+|+ |+++.
T Consensus 202 P~giavD~~G~-i~Vad 217 (279)
T d1q7fa_ 202 PIGVGINSNGE-ILIAD 217 (279)
T ss_dssp EEEEEECTTCC-EEEEE
T ss_pred CcccccccCCe-EEEEE
Confidence 45678999997 65554
|