Citrus Sinensis ID: 005099
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 714 | 2.2.26 [Sep-21-2011] | |||||||
| Q02028 | 706 | Stromal 70 kDa heat shock | N/A | no | 0.988 | 1.0 | 0.848 | 0.0 | |
| Q9LTX9 | 718 | Heat shock 70 kDa protein | yes | no | 0.987 | 0.981 | 0.840 | 0.0 | |
| Q9STW6 | 718 | Heat shock 70 kDa protein | no | no | 0.992 | 0.987 | 0.85 | 0.0 | |
| Q08080 | 599 | Stromal 70 kDa heat shock | N/A | no | 0.799 | 0.953 | 0.900 | 0.0 | |
| P22358 | 636 | Chaperone protein dnaK2 O | N/A | no | 0.879 | 0.987 | 0.716 | 0.0 | |
| Q8YW74 | 633 | Chaperone protein dnaK2 O | yes | no | 0.883 | 0.996 | 0.724 | 0.0 | |
| P29215 | 627 | Chaperone protein dnaK OS | yes | no | 0.875 | 0.996 | 0.700 | 0.0 | |
| P50021 | 634 | Chaperone protein dnaK2 O | yes | no | 0.883 | 0.995 | 0.707 | 0.0 | |
| Q7UZG3 | 634 | Chaperone protein dnaK2 O | yes | no | 0.883 | 0.995 | 0.702 | 0.0 | |
| Q8DI58 | 640 | Chaperone protein dnaK2 O | yes | no | 0.886 | 0.989 | 0.710 | 0.0 |
| >sp|Q02028|HSP7S_PEA Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum GN=HSP70 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1192 bits (3084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/712 (84%), Positives = 643/712 (90%), Gaps = 6/712 (0%)
Query: 3 CSSAAQIHFLGNISFSSRKNSKTGRENTAGSRNLFFGQRVGGNRFGSVPSAAFLRLKSEN 62
+S+AQIH LG SFSS K + N S+ LFFGQR+ N AAF +L S+
Sbjct: 1 MASSAQIHGLGTASFSSLKKPSSISGN---SKTLFFGQRLNSNH-SPFTRAAFPKLSSKT 56
Query: 63 RGRRYVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR 122
+ + +RVV+EKVVGIDLGTTNSAVAAMEGGKPTI+TNAEGQRTTPSVVAYTKNGDR
Sbjct: 57 FKKGFT--LRVVSEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYTKNGDR 114
Query: 123 LVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGK 182
LVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSYRV+RD+NGNVKL+CPAIGK
Sbjct: 115 LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVIRDDNGNVKLDCPAIGK 174
Query: 183 QFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRI 242
FAAEEISAQVLRKLVDDASKFLND VTKAVVTVPAYFNDSQRTATKDAGRIAGL+VLRI
Sbjct: 175 SFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 234
Query: 243 INEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 302
INEPTAASLAYGFE+KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD
Sbjct: 235 INEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 294
Query: 303 KRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGP 362
KR+VDWLA +FKRDEGIDLLKDKQALQRLTETAEKAKMELSSL+QTNISLPFITATADGP
Sbjct: 295 KRVVDWLAGDFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLSQTNISLPFITATADGP 354
Query: 363 KHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELV 422
KHI+TTLTR KFEELCSDLLDRL+TPVE SLRDAKLS KD+DEVILVGGSTRIPAVQELV
Sbjct: 355 KHIETTLTRAKFEELCSDLLDRLRTPVENSLRDAKLSIKDIDEVILVGGSTRIPAVQELV 414
Query: 423 KKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIP 482
KK+ G++PNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDV+PLSLGLETLGGVMTKIIP
Sbjct: 415 KKLIGKDPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVSPLSLGLETLGGVMTKIIP 474
Query: 483 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 542
RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE
Sbjct: 475 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 534
Query: 543 VKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAI 602
VKFDIDANGILSV+A+DKGTGKKQDITITGASTLP DEV+RMV EAERF+KEDKEKR+AI
Sbjct: 535 VKFDIDANGILSVAAIDKGTGKKQDITITGASTLPGDEVERMVSEAERFSKEDKEKREAI 594
Query: 603 DTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQ 662
DTKNQADSVVYQTEKQLKELG+KVPA VK KVE KL ELK+AI GSTQ +KD +AALNQ
Sbjct: 595 DTKNQADSVVYQTEKQLKELGEKVPAPVKEKVEAKLGELKEAITGGSTQTIKDALAALNQ 654
Query: 663 EVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
EVMQLGQSLYNQPGA G P + S +G +GDVIDADFTDSK
Sbjct: 655 EVMQLGQSLYNQPGAAGQAGPTPPGSESGPSESSGKEGPEGDVIDADFTDSK 706
|
Interacts with newly imported chloroplast proteins to assist in their maturation. Pisum sativum (taxid: 3888) |
| >sp|Q9LTX9|HSP7G_ARATH Heat shock 70 kDa protein 7, chloroplastic OS=Arabidopsis thaliana GN=HSP70-7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/722 (84%), Positives = 655/722 (90%), Gaps = 17/722 (2%)
Query: 3 CSSAAQIHFLGNISFSSRKNSKTGR--ENTAGS--RNLFFGQRVGGNRFGSVPSAAFLRL 58
SSAAQIH LG I F + +S + + +N S R++FFG R + F + P++AFLR+
Sbjct: 2 ASSAAQIHILGGIGFPTSSSSSSTKNLDNKTNSIPRSVFFGNRT--SPF-TTPTSAFLRM 58
Query: 59 --KSENRGRRYVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAY 116
++ N R VGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAY
Sbjct: 59 GRRNNNASRYTVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAY 118
Query: 117 TKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLE 176
TK+ DRLVGQIAKRQAVVNPENTFFSVKRFIGR+M EV EESKQVSYRV++DENGNVKL+
Sbjct: 119 TKSKDRLVGQIAKRQAVVNPENTFFSVKRFIGRRMNEVAEESKQVSYRVIKDENGNVKLD 178
Query: 177 CPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAG 236
CPAIGKQFAAEEISAQVLRKLVDDAS+FLND VTKAV+TVPAYFNDSQRTATKDAGRIAG
Sbjct: 179 CPAIGKQFAAEEISAQVLRKLVDDASRFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAG 238
Query: 237 LDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHL 296
L+VLRIINEPTAASLAYGFE+K+NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHL
Sbjct: 239 LEVLRIINEPTAASLAYGFERKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHL 298
Query: 297 GGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFIT 356
GGDDFDKR+VDWLAS FK+DEGIDLLKDKQALQRLTE AEKAK+ELSSLTQTN+SLPFIT
Sbjct: 299 GGDDFDKRVVDWLASTFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTNMSLPFIT 358
Query: 357 ATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIP 416
ATADGPKHI+TTLTR KFEELCSDLLDR++TPVE SLRDAKLSFKD+DEVILVGGSTRIP
Sbjct: 359 ATADGPKHIETTLTRGKFEELCSDLLDRVRTPVENSLRDAKLSFKDIDEVILVGGSTRIP 418
Query: 417 AVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGV 476
AVQ+LV+K+TG+EPNV+VNPDEVVALGAAVQAGVL+GDVSDIVLLDVTPLSLGLETLGGV
Sbjct: 419 AVQDLVRKLTGKEPNVSVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSLGLETLGGV 478
Query: 477 MTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPR 536
MTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKS+GSFRLDGIPPAPR
Sbjct: 479 MTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSIGSFRLDGIPPAPR 538
Query: 537 GVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDK 596
GVPQIEVKFDIDANGILSVSA DKGTGKKQDITITGASTLP DEV MVQEAERFAKEDK
Sbjct: 539 GVPQIEVKFDIDANGILSVSASDKGTGKKQDITITGASTLPKDEVDTMVQEAERFAKEDK 598
Query: 597 EKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDT 656
EKRDAIDTKNQADSVVYQTEKQLKELG+K+P VK KVE KL+ELK+ IA GSTQ +KDT
Sbjct: 599 EKRDAIDTKNQADSVVYQTEKQLKELGEKIPGPVKEKVEAKLQELKEKIASGSTQEIKDT 658
Query: 657 MAALNQEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSSN---KGQD--GDVIDADFT 711
MAALNQEVMQ+GQSLYNQP G GA PG EA +S ++ KG D GDVIDADFT
Sbjct: 659 MAALNQEVMQIGQSLYNQPQPG---GADSPPGGEASSSSDTSSSAKGGDNGGDVIDADFT 715
Query: 712 DS 713
DS
Sbjct: 716 DS 717
|
In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STW6|HSP7F_ARATH Heat shock 70 kDa protein 6, chloroplastic OS=Arabidopsis thaliana GN=HSP70-6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1181 bits (3056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 612/720 (85%), Positives = 649/720 (90%), Gaps = 11/720 (1%)
Query: 3 CSSAAQIHFLGNISFSSRKNSK---TGRENTAGSRNLFFGQRVGGNRFGSVPSAAFLRLK 59
SSAAQIH LG I F+S +SK G+ T R+ FFG R G S P++AFLR+
Sbjct: 2 ASSAAQIHVLGGIGFASSSSSKRNLNGKGGTFMPRSAFFGTRTGPF---STPTSAFLRMG 58
Query: 60 SENRG---RRYVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAY 116
+ N G R VGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAY
Sbjct: 59 TRNGGGASRYAVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAY 118
Query: 117 TKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLE 176
TK+GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSYRVVRDEN NVKLE
Sbjct: 119 TKSGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMNEVDEESKQVSYRVVRDENNNVKLE 178
Query: 177 CPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAG 236
CPAI KQFAAEEISAQVLRKLVDDAS+FLND VTKAV+TVPAYFNDSQRTATKDAGRIAG
Sbjct: 179 CPAINKQFAAEEISAQVLRKLVDDASRFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAG 238
Query: 237 LDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHL 296
L+VLRIINEPTAASLAYGF++K NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHL
Sbjct: 239 LEVLRIINEPTAASLAYGFDRKANETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHL 298
Query: 297 GGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFIT 356
GGDDFDKR+VDWLA+ FK+DEGIDLLKDKQALQRLTE AEKAK+ELSSLTQTN+SLPFIT
Sbjct: 299 GGDDFDKRVVDWLAAEFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTNMSLPFIT 358
Query: 357 ATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIP 416
ATADGPKHI+TTLTR KFEELCSDLLDR++TPVE SLRDAKLSFKD+DEVILVGGSTRIP
Sbjct: 359 ATADGPKHIETTLTRAKFEELCSDLLDRVRTPVENSLRDAKLSFKDIDEVILVGGSTRIP 418
Query: 417 AVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGV 476
AVQELV+K+TG+EPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLS+GLETLGGV
Sbjct: 419 AVQELVRKVTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSIGLETLGGV 478
Query: 477 MTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPR 536
MTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPR
Sbjct: 479 MTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPR 538
Query: 537 GVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDK 596
GVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLP DEV +MVQEAERFAK+DK
Sbjct: 539 GVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPKDEVDQMVQEAERFAKDDK 598
Query: 597 EKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDT 656
EKRDAIDTKNQADSVVYQTEKQLKELG+K+P EVK KVE KL+ELKD I GSTQ +KD
Sbjct: 599 EKRDAIDTKNQADSVVYQTEKQLKELGEKIPGEVKEKVEAKLQELKDKIGSGSTQEIKDA 658
Query: 657 MAALNQEVMQLGQSLYNQ--PGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
MAALNQEVMQ+GQSLYNQ G A + GA +G S SS G DVIDADFTDS+
Sbjct: 659 MAALNQEVMQIGQSLYNQPGAGGPGAGPSPGGEGASSGDSSSSKGGDGDDVIDADFTDSQ 718
|
In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q08080|HSP7S_SPIOL Stromal 70 kDa heat shock-related protein, chloroplastic (Fragment) OS=Spinacia oleracea GN=CHSP70 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/571 (90%), Positives = 533/571 (93%)
Query: 132 AVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISA 191
+VVNPENTFFSVKRFIGRKM EVDEESKQVSY VVRDEN NVKLECPAIGKQFAAEEISA
Sbjct: 4 SVVNPENTFFSVKRFIGRKMTEVDEESKQVSYTVVRDENNNVKLECPAIGKQFAAEEISA 63
Query: 192 QVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASL 251
QVLRKLVDDASKFLND VTKAVVTVPAYFNDSQRTATKDAGRIAGL+VLRIINEPTAASL
Sbjct: 64 QVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASL 123
Query: 252 AYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 311
AYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS
Sbjct: 124 AYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 183
Query: 312 NFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTR 371
+FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ NISLPFITATADGPKHI+TTLTR
Sbjct: 184 SFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQANISLPFITATADGPKHIETTLTR 243
Query: 372 VKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN 431
KFEEL SDLLDRL+TPVE SLRDAKLSF DLDEVILVGGSTRIPAV ELVKKMTG+ PN
Sbjct: 244 AKFEELWSDLLDRLRTPVENSLRDAKLSFSDLDEVILVGGSTRIPAVIELVKKMTGKAPN 303
Query: 432 VTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSK 491
VTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLS+GLETLGGVMTKIIPRNTTLPTSK
Sbjct: 304 VTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSK 363
Query: 492 SEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANG 551
SEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ+EVKFDIDANG
Sbjct: 364 SEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQVEVKFDIDANG 423
Query: 552 ILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSV 611
ILSV+A+DKGTGKKQDITITGASTLP DEV+RMV EAE+FAKEDKEKR+ IDTKNQADSV
Sbjct: 424 ILSVTAIDKGTGKKQDITITGASTLPGDEVERMVSEAEKFAKEDKEKREVIDTKNQADSV 483
Query: 612 VYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSL 671
VYQTEKQLKELG+KVP VK KVE KL ELKDAI G TQA+KD MAALNQEVMQLGQSL
Sbjct: 484 VYQTEKQLKELGEKVPVPVKEKVEAKLGELKDAINGGETQAIKDAMAALNQEVMQLGQSL 543
Query: 672 YNQPGAGAAPGAGPTPGAEAGASDSSNKGQD 702
YNQPGAG PGA E ++ + +D
Sbjct: 544 YNQPGAGGEPGAAQAQHQEQSSARQIQRAKD 574
|
Interacts with newly imported chloroplast proteins to assist in their maturation. Spinacia oleracea (taxid: 3562) |
| >sp|P22358|DNAK2_SYNY3 Chaperone protein dnaK2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dnaK2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/639 (71%), Positives = 540/639 (84%), Gaps = 11/639 (1%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPSVV Y KNGDRLVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVVGYAKNGDRLVGQIAKRQAVMNP 62
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
NTF+SVKRFIGRK E+ E+ +V+Y VV+D NGNVKL+CPA GKQFA EEISAQVLRK
Sbjct: 63 GNTFYSVKRFIGRKFDEITNEATEVAYSVVKDGNGNVKLDCPAQGKQFAPEEISAQVLRK 122
Query: 197 LVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFE 256
LVDDASK+L ++VT+AV+TVPAYFNDSQR ATKDAG+IAG++VLRIINEPTAASLAYG +
Sbjct: 123 LVDDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGIEVLRIINEPTAASLAYGLD 182
Query: 257 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316
KK+NETILVFDLGGGTFDVS+LEVG+GVFEVL+TSGDTHLGGDDFDK+IVD+LA F++
Sbjct: 183 KKDNETILVFDLGGGTFDVSILEVGEGVFEVLATSGDTHLGGDDFDKKIVDFLAGEFQKA 242
Query: 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEE 376
EGIDL KDKQALQRLTE AEKAK+ELS ++QT I+LPFITAT DGPKH+DTTL+R KFEE
Sbjct: 243 EGIDLRKDKQALQRLTEAAEKAKIELSGVSQTEINLPFITATQDGPKHLDTTLSRAKFEE 302
Query: 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNP 436
+CSDL+DR PVE ++RDAK+ LDE++LVGGSTRIPAVQE+VKK+ G++PN VNP
Sbjct: 303 ICSDLIDRCGIPVENAIRDAKIDKSALDEIVLVGGSTRIPAVQEVVKKILGKDPNQGVNP 362
Query: 437 DEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFS 496
DEVVA+GAA+Q GVL+G+V DI+LLDV+PLSLG+ETLGGVMTKIIPRNTT+PT KSE FS
Sbjct: 363 DEVVAVGAAIQGGVLSGEVKDILLLDVSPLSLGVETLGGVMTKIIPRNTTIPTKKSETFS 422
Query: 497 TAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVS 556
TA DGQ++VEI+VLQGERE DNKSLG+FRLDGIPPAPRGVPQIEV FDIDANGIL+V+
Sbjct: 423 TAVDGQSNVEIHVLQGEREMANDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILNVT 482
Query: 557 AVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTE 616
A D+GTGK+Q I+ITGASTLP+ EV RMV+EAE A DKE+R+ ID KNQADS+VYQ E
Sbjct: 483 AKDRGTGKEQSISITGASTLPDTEVDRMVKEAESNAAADKERREKIDRKNQADSLVYQAE 542
Query: 617 KQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQPG 676
KQ+ ELGDKVPA K K EG +K+LK+A+A+ ++ M L Q + +G ++Y Q G
Sbjct: 543 KQITELGDKVPAADKIKAEGLIKDLKEAVAQEDDAKIQTVMPELQQVLYSIGSNMYQQAG 602
Query: 677 AGA---APGAGPTPGAEAGASDSSNKGQDGDVIDADFTD 712
A A APGAGP G +G D DVIDA+F++
Sbjct: 603 AEAGVGAPGAGPEAGTSSGGGD--------DVIDAEFSE 633
|
Acts as a chaperone. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|Q8YW74|DNAK2_NOSS1 Chaperone protein dnaK2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=dnaK2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/638 (72%), Positives = 545/638 (85%), Gaps = 7/638 (1%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPSVVA+ KNGD LVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVVAFAKNGDTLVGQIAKRQAVMNP 62
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
ENTF+SVKRFIGR+ EV E+ +VSY+V+ GNVK++ P GKQFA EEISA+VLRK
Sbjct: 63 ENTFYSVKRFIGRRYDEVTNEATEVSYKVLS-SGGNVKVDSPGAGKQFAPEEISAKVLRK 121
Query: 197 LVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFE 256
LV+DASK+L ++VT+AV+TVPAYFNDSQR ATKDAG+IAG++V+RIINEPTAASLAYGF+
Sbjct: 122 LVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGIEVMRIINEPTAASLAYGFD 181
Query: 257 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316
KK+NETILVFDLGGGTFDVSVLEVGDGVFEVL+TSGDTHLGGDDFDK+IVD+LA F++D
Sbjct: 182 KKSNETILVFDLGGGTFDVSVLEVGDGVFEVLATSGDTHLGGDDFDKKIVDFLAEQFRKD 241
Query: 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEE 376
EGIDL KDKQALQRLTE AEKAK+ELSS+TQ I+LPFITAT DGPKH+D TLTR KFEE
Sbjct: 242 EGIDLRKDKQALQRLTEAAEKAKIELSSVTQAEINLPFITATQDGPKHLDMTLTRAKFEE 301
Query: 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNP 436
LC+DL+DR + PVE +LRDAKL +++DEV+LVGGSTRIPAVQ+LVK + GREPN TVNP
Sbjct: 302 LCADLIDRCRIPVEQALRDAKLKKENIDEVVLVGGSTRIPAVQQLVKNLLGREPNQTVNP 361
Query: 437 DEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFS 496
DEVVA+GAA+QAGVL G+V+ I+LLDVTPLSLG+ETLGGVMTKIIPRNTT+PT KSEVFS
Sbjct: 362 DEVVAVGAAIQAGVLGGEVTGILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFS 421
Query: 497 TAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVS 556
TA DGQT+VEI+VLQGEREF DNKSLG+FRLDGIPPAPRGVPQIEV FDIDANGIL+V+
Sbjct: 422 TAVDGQTNVEIHVLQGEREFANDNKSLGTFRLDGIPPAPRGVPQIEVVFDIDANGILNVT 481
Query: 557 AVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTE 616
A DKGTGK+Q I+ITGASTL ++ RMV+EAE+ A DKE+R+ I+ KNQADS+ YQ E
Sbjct: 482 AKDKGTGKEQSISITGASTLDKTDIDRMVREAEQNASSDKERREKIERKNQADSLAYQAE 541
Query: 617 KQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQPG 676
KQL+ELGDKVP K KVEG +K+L++A+A+ + +K L Q + +G ++Y Q G
Sbjct: 542 KQLQELGDKVPEADKTKVEGLVKDLREAVAKEDDEQIKKLTPELQQALFAVGSNIYQQAG 601
Query: 677 AGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
GAAPGA P G +S+ G D DVIDADFT++K
Sbjct: 602 GGAAPGAAPQDGGT-----TSSDGGD-DVIDADFTETK 633
|
Acts as a chaperone. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P29215|DNAK_GUITH Chaperone protein dnaK OS=Guillardia theta GN=dnaK PE=3 SV=2 | Back alignment and function description |
|---|
Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/638 (70%), Positives = 528/638 (82%), Gaps = 13/638 (2%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
KVVGIDLGTTNS VA MEGGKP ++ NAEG RTTPSVVAYTK GDRLVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSVVAVMEGGKPAVIQNAEGFRTTPSVVAYTKTGDRLVGQIAKRQAVINP 62
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
+NTF+SVKRFIGR+ EV EE KQVSY V D NGN+KL+CP++ K+FA+EEISA+VLRK
Sbjct: 63 DNTFYSVKRFIGRRSEEVSEELKQVSYIVKTDSNGNIKLDCPSLKKEFASEEISAEVLRK 122
Query: 197 LVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFE 256
LVDDASK+L +SV +AV+TVPAYFNDSQR ATKDAGRIAGL+VLRIINEPTAASLAYG +
Sbjct: 123 LVDDASKYLGESVKQAVITVPAYFNDSQRQATKDAGRIAGLEVLRIINEPTAASLAYGLD 182
Query: 257 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316
KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD +IV WL F+ +
Sbjct: 183 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDDKIVQWLLKEFETE 242
Query: 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEE 376
I+L D+QALQRLTE +EKAK+ELS+L+QT I+LPF+TAT GPKH++ ++TR KFEE
Sbjct: 243 HSINLKSDRQALQRLTEASEKAKIELSNLSQTEINLPFLTATETGPKHLERSITRAKFEE 302
Query: 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNP 436
LCSDL++R+K PVE +L+DAKL +DEV+LVGGSTRIPA+QELVK++ + PN TVNP
Sbjct: 303 LCSDLINRVKIPVENALKDAKLDSSKIDEVVLVGGSTRIPAIQELVKRILNKTPNQTVNP 362
Query: 437 DEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFS 496
DEVVA+GAAVQAGVLAG+V DI+LLDVTPLSLG+ETLGGV T+IIPRNTT+PT KSEVFS
Sbjct: 363 DEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVTTRIIPRNTTIPTKKSEVFS 422
Query: 497 TAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVS 556
TA D Q +VEI+VLQGEREF +DNKSLG+FRLDGI PAPRGVPQIEV FDIDANGILSV+
Sbjct: 423 TAVDNQPNVEIHVLQGEREFAKDNKSLGTFRLDGILPAPRGVPQIEVTFDIDANGILSVT 482
Query: 557 AVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTE 616
A DKGTGK+Q ITITGASTLP+DEV+RMV EA+ AKEDKEKRD ID KNQ+DS+ YQ+E
Sbjct: 483 AKDKGTGKEQSITITGASTLPSDEVERMVNEAQNSAKEDKEKRDKIDLKNQSDSLCYQSE 542
Query: 617 KQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQPG 676
KQLKEL K+ K K+ + EL++AI + M+D + L +M LG+S+Y +
Sbjct: 543 KQLKELEGKIDDTNKNKISSMISELRNAINNENYDEMRDLNSKLQTALMDLGKSVYEKTS 602
Query: 677 AGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
+ PT ++DS VIDADF+++K
Sbjct: 603 KEQTSTSSPT-----NSNDS--------VIDADFSETK 627
|
Acts as a chaperone. Guillardia theta (taxid: 55529) |
| >sp|P50021|DNAK2_SYNE7 Chaperone protein dnaK2 OS=Synechococcus elongatus (strain PCC 7942) GN=dnaK2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/639 (70%), Positives = 537/639 (84%), Gaps = 8/639 (1%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPSVVA+ KN DRLVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVVAFAKNQDRLVGQIAKRQAVMNP 62
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGN-VKLECPAIGKQFAAEEISAQVLR 195
ENTF+SVKRFIGR+ EV E +V+Y+V D +GN VKL+ GKQFA EEISAQVLR
Sbjct: 63 ENTFYSVKRFIGRRPDEVTNELTEVAYKV--DTSGNAVKLDSSNAGKQFAPEEISAQVLR 120
Query: 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF 255
KL +DASK+L ++VT+AV+TVPAYFNDSQR ATKDAG+IAGL+VLRIINEPTAA+LAYG
Sbjct: 121 KLAEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 180
Query: 256 EKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315
+KK+NE ILVFDLGGGTFDVSVLEVGDGVFEVL+TSGDTHLGGDDFDK+IVD+LA F++
Sbjct: 181 DKKSNERILVFDLGGGTFDVSVLEVGDGVFEVLATSGDTHLGGDDFDKKIVDFLAGEFQK 240
Query: 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFE 375
+EGIDL KDKQALQRLTE AEKAK+ELSS TQT I+LPFITAT DGPKH+D TLTR KFE
Sbjct: 241 NEGIDLRKDKQALQRLTEAAEKAKIELSSATQTEINLPFITATQDGPKHLDLTLTRAKFE 300
Query: 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVN 435
EL SDL+DR + PVE +++DAKL+ ++DE++LVGGSTRIPAVQ +VK+MTG+EPN +VN
Sbjct: 301 ELASDLIDRCRIPVEQAIKDAKLALSEIDEIVLVGGSTRIPAVQAIVKQMTGKEPNQSVN 360
Query: 436 PDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVF 495
PDEVVA+GAA+Q GVLAG+V DI+LLDVTPLSLG+ETLGGVMTK+IPRNTT+PT KSE F
Sbjct: 361 PDEVVAIGAAIQGGVLAGEVKDILLLDVTPLSLGVETLGGVMTKLIPRNTTIPTKKSETF 420
Query: 496 STAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555
STAADGQT+VEI+VLQGERE DNKSLG+FRLDGIPPAPRGVPQIEV FDIDANGIL+V
Sbjct: 421 STAADGQTNVEIHVLQGEREMASDNKSLGTFRLDGIPPAPRGVPQIEVIFDIDANGILNV 480
Query: 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQT 615
+A DKG+GK+Q I+ITGASTL ++EV RMV++AE A DKE+R+ ID KNQAD++VYQ+
Sbjct: 481 TAKDKGSGKEQSISITGASTLSDNEVDRMVKDAEANAAADKERRERIDLKNQADTLVYQS 540
Query: 616 EKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQP 675
EKQL ELGDK+ A+ K KVEG ++ELKDA+A +K + L Q + G S+Y Q
Sbjct: 541 EKQLSELGDKISADEKSKVEGFIQELKDALAAEDYDKIKSIIEQLQQALYAAGSSVYQQA 600
Query: 676 GAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
A A+ A P + + +S D DVIDA+F++SK
Sbjct: 601 SAEASANAQAGPSSSSSSSSG-----DDDVIDAEFSESK 634
|
Acts as a chaperone. Synechococcus elongatus (strain PCC 7942) (taxid: 1140) |
| >sp|Q7UZG3|DNAK2_PROMP Chaperone protein dnaK2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dnaK2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 899 bits (2324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/638 (70%), Positives = 538/638 (84%), Gaps = 7/638 (1%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPSVVAYTKN D+LVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVVAYTKNQDQLVGQIAKRQAVMNP 62
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
ENTF+S KRF+GR++ EV+EESK+VSY + + NVKL+CP + KQF+ EE+SAQVLRK
Sbjct: 63 ENTFYSAKRFVGRRVDEVNEESKEVSYGIEK-AGSNVKLKCPVLDKQFSPEEVSAQVLRK 121
Query: 197 LVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFE 256
L +DA K+L +++T+AV+TVPAYFNDSQR ATKDAG+IAGL+VLRIINEPTAA+LAYG +
Sbjct: 122 LSEDAGKYLGENITQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 181
Query: 257 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316
KK+NE ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD+ IVD LAS FK +
Sbjct: 182 KKSNERILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDRCIVDHLASIFKSN 241
Query: 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEE 376
EGIDL +DKQALQRLTE AEKAK+ELS+ TQ+ I+LPFITAT +GPKH+D LTR FEE
Sbjct: 242 EGIDLRQDKQALQRLTEAAEKAKIELSNATQSEINLPFITATPEGPKHLDLNLTRANFEE 301
Query: 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNP 436
L S L+DR + PVE +L+DAKLS ++DE+++VGGSTR+PAVQELVK++TG++PN TVNP
Sbjct: 302 LASKLIDRCRVPVEQALKDAKLSTGEIDEIVMVGGSTRMPAVQELVKRVTGKDPNQTVNP 361
Query: 437 DEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFS 496
DEVVA+GAA+Q GVLAG+V DI+LLDVTPLSLG+ETLGGVMTK+I RNTT+PT KSE +S
Sbjct: 362 DEVVAVGAAIQGGVLAGEVKDILLLDVTPLSLGVETLGGVMTKMITRNTTVPTKKSETYS 421
Query: 497 TAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVS 556
TA DGQT+VEI+VLQGERE DNKSLG+FRLDGIP APRGVPQIEV FDIDANGILSV+
Sbjct: 422 TAVDGQTNVEIHVLQGEREMASDNKSLGTFRLDGIPSAPRGVPQIEVTFDIDANGILSVT 481
Query: 557 AVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTE 616
A DKG+GK+Q I+ITGASTL ++EV +MV++AE A DKEKR+ ID KNQA+++VYQTE
Sbjct: 482 AKDKGSGKEQSISITGASTLSDNEVDKMVKDAESNASVDKEKREKIDLKNQAETLVYQTE 541
Query: 617 KQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQPG 676
KQL ELGDKV A K KVE K K LK+A ++ +AMK + L QE+ +G S+Y QPG
Sbjct: 542 KQLGELGDKVDASAKAKVEEKSKALKEATSKEDYEAMKKLLEELQQELYAIGSSVYQQPG 601
Query: 677 AGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
P PG +++S++KG D DVIDADFT++K
Sbjct: 602 -----NQPPAPGT-PDSNESNDKGGDDDVIDADFTETK 633
|
Acts as a chaperone. Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919) |
| >sp|Q8DI58|DNAK2_THEEB Chaperone protein dnaK2 OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaK2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/643 (71%), Positives = 541/643 (84%), Gaps = 10/643 (1%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPSVVAYTKNGDRLVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVVAYTKNGDRLVGQIAKRQAVMNP 62
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
ENTF+SVKRFIGR+ EV E+ +VSY+V+ + NGNVKL+CPA+GKQFA EEISAQVLRK
Sbjct: 63 ENTFYSVKRFIGRRFDEVTHEATEVSYKVL-NVNGNVKLDCPALGKQFAPEEISAQVLRK 121
Query: 197 LVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFE 256
L +DASK+L + VT+AV+TVPAYFNDSQR ATKDAG+IAGL+VLRIINEPTAASLAYG +
Sbjct: 122 LKEDASKYLGEEVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLD 181
Query: 257 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316
KK NETILVFDLGGGTFDVS+LEVGDGVFEVL+TSGDTHLGGDDFDK+IVD+LA +F+
Sbjct: 182 KKANETILVFDLGGGTFDVSILEVGDGVFEVLATSGDTHLGGDDFDKKIVDYLAESFRAQ 241
Query: 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEE 376
EGIDL KD+QALQRLTE AEKAK+ELSS+ QT I+LPFITAT DGPKH+D TLTR KFEE
Sbjct: 242 EGIDLRKDRQALQRLTEAAEKAKIELSSVMQTEINLPFITATQDGPKHLDMTLTRAKFEE 301
Query: 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNP 436
LCSDL+DR + PVE +L+DAKLS +DEV+LVGGSTRIPA+QELVK++ G++PN +VNP
Sbjct: 302 LCSDLIDRCRVPVEQALKDAKLSKDQIDEVVLVGGSTRIPAIQELVKRLLGKDPNQSVNP 361
Query: 437 DEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFS 496
DEVVA+GAA+QAGVLAG+V DI+LLDVTPLSLG+ETLGGVMTKIIPRNTT+PT KSEVFS
Sbjct: 362 DEVVAVGAAIQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFS 421
Query: 497 TAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVS 556
TA DGQT+VEI+VLQGERE DNKSLG+FRLDGIPPAPRGVPQIEV FDIDANGIL+V+
Sbjct: 422 TAVDGQTNVEIHVLQGEREMAADNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILNVT 481
Query: 557 AVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTE 616
A DKGTGK+Q I+ITGASTLP +EV+RMV+EAE A DK KR+ I+TKNQA+ + YQ E
Sbjct: 482 ARDKGTGKQQSISITGASTLPKEEVERMVREAEMNAAADKAKREKIETKNQAEQLCYQAE 541
Query: 617 KQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALN----QEVMQ-LGQSL 671
KQL ELGDKV K ++ + L+ I T+A K + A++ + +MQ L Q+L
Sbjct: 542 KQLNELGDKVSTSDKDRLTSLIANLRSEIG---TEAEKKPIDAIDFGRVKSLMQDLQQAL 598
Query: 672 YNQPGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
Y+ G+ A + G + +S S G D +VIDA+F+++K
Sbjct: 599 YS-VGSSVYQSAQSSDGTGSSSSGGSGSGGDDEVIDAEFSETK 640
|
Acts as a chaperone. Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 714 | ||||||
| 225456004 | 707 | PREDICTED: stromal 70 kDa heat shock-rel | 0.985 | 0.995 | 0.885 | 0.0 | |
| 356559803 | 689 | PREDICTED: stromal 70 kDa heat shock-rel | 0.964 | 1.0 | 0.878 | 0.0 | |
| 255570990 | 703 | heat shock protein, putative [Ricinus co | 0.983 | 0.998 | 0.876 | 0.0 | |
| 357445271 | 707 | Heat shock protein [Medicago truncatula] | 0.987 | 0.997 | 0.868 | 0.0 | |
| 449442347 | 707 | PREDICTED: stromal 70 kDa heat shock-rel | 0.984 | 0.994 | 0.877 | 0.0 | |
| 1143427 | 707 | heat shock protein 70 [Cucumis sativus] | 0.984 | 0.994 | 0.875 | 0.0 | |
| 224129424 | 705 | predicted protein [Populus trichocarpa] | 0.978 | 0.991 | 0.880 | 0.0 | |
| 166919372 | 700 | chloroplast heat shock protein 70-2 [Ipo | 0.978 | 0.998 | 0.862 | 0.0 | |
| 224120086 | 706 | predicted protein [Populus trichocarpa] | 0.985 | 0.997 | 0.877 | 0.0 | |
| 2654208 | 715 | heat shock 70 protein [Spinacia oleracea | 0.984 | 0.983 | 0.860 | 0.0 |
| >gi|225456004|ref|XP_002279101.1| PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1236 bits (3197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 632/714 (88%), Positives = 658/714 (92%), Gaps = 10/714 (1%)
Query: 3 CSSAAQIHFLGNISFSSRKNSKTGRENTAGSRNLFFGQRVGGN--RFGSVPSAAFLRLKS 60
SS AQIH LG F+S + + SR +FFGQR+ + FG +P AFL+LK
Sbjct: 2 ASSTAQIHGLGTTGFAS----SSAKPKRTSSRTVFFGQRLSPSTASFG-LPKTAFLKLKR 56
Query: 61 ENRGRRYVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG 120
+R GPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG
Sbjct: 57 NSRRDYSTGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG 116
Query: 121 DRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAI 180
DRLVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSYRVVRDENGNVKLECPAI
Sbjct: 117 DRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLECPAI 176
Query: 181 GKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVL 240
GKQFAAEEISAQVLRKLVDDASKFLND VTKAVVTVPAYFNDSQRTATKDAGRIAGL+VL
Sbjct: 177 GKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVL 236
Query: 241 RIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 300
RIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD
Sbjct: 237 RIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 296
Query: 301 FDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATAD 360
FDKR+VDWLA++FK+DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATAD
Sbjct: 297 FDKRVVDWLAASFKKDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATAD 356
Query: 361 GPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQE 420
GPKHI+TTLTR KFEELCSDLLDRLKTPVE SLRDAKLSFKDLDEVILVGGSTRIPAVQE
Sbjct: 357 GPKHIETTLTRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQE 416
Query: 421 LVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKI 480
LVKKMTG++PNVTVNPDEVVALGAAVQAGVL+GDVSDIVLLDV+PLSLGLETLGGVMTKI
Sbjct: 417 LVKKMTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVSPLSLGLETLGGVMTKI 476
Query: 481 IPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ 540
IPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ
Sbjct: 477 IPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ 536
Query: 541 IEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRD 600
IEVKFDIDANGILSV+A+DKGTGKKQDITITGASTLP DEV+RMV EAERFAKEDKEKRD
Sbjct: 537 IEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPTDEVERMVSEAERFAKEDKEKRD 596
Query: 601 AIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAAL 660
AIDTKNQADSVVYQTEKQLKELGDKVPA+VK KVE KL ELKDAI+ GSTQ MKD MAAL
Sbjct: 597 AIDTKNQADSVVYQTEKQLKELGDKVPAQVKEKVEAKLGELKDAISGGSTQVMKDAMAAL 656
Query: 661 NQEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
NQEVMQLGQSLYNQPGA A A G+EAG S+SS KG DGDVIDADFTDSK
Sbjct: 657 NQEVMQLGQSLYNQPGAPGAGPAP---GSEAGPSESSGKGPDGDVIDADFTDSK 707
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559803|ref|XP_003548186.1| PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1232 bits (3188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/714 (87%), Positives = 656/714 (91%), Gaps = 25/714 (3%)
Query: 1 MACSSAAQIHFLGNISFSSRKNSKTGRENTAGSRNLFFGQRVGGNRFGSVPSAAFLRLKS 60
MACSSA QIH LG SFS R LF GQR+ AAF+++KS
Sbjct: 1 MACSSA-QIHGLGTPSFS---------------RTLFLGQRLN-------TKAAFIKVKS 37
Query: 61 ENRGRRYVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG 120
RR + P+RVVNEKVVGIDLGTTNSAVAAMEGGKPTI+TNAEGQRTTPSVVAYTKNG
Sbjct: 38 APTPRR-LRPLRVVNEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYTKNG 96
Query: 121 DRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAI 180
DRLVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSYRV+RD+NGNVKL+CPAI
Sbjct: 97 DRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVIRDDNGNVKLDCPAI 156
Query: 181 GKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVL 240
GKQFAAEEISAQVLRKLVDDASKFLND VTKAVVTVPAYFNDSQRTATKDAGRIAGL+VL
Sbjct: 157 GKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVL 216
Query: 241 RIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 300
RIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD
Sbjct: 217 RIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 276
Query: 301 FDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATAD 360
FDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELS+LTQTNISLPFITATAD
Sbjct: 277 FDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSTLTQTNISLPFITATAD 336
Query: 361 GPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQE 420
GPKHI+TT+TR KFEELCSDLLDRL+TPVE SLRDAKLSFKDLDEVILVGGSTRIPAVQE
Sbjct: 337 GPKHIETTITRAKFEELCSDLLDRLRTPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQE 396
Query: 421 LVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKI 480
LVKK+TG++PNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKI
Sbjct: 397 LVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKI 456
Query: 481 IPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ 540
IPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ
Sbjct: 457 IPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ 516
Query: 541 IEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRD 600
IEVKFDIDANGILSV+A+DKGTGKKQDITITGASTLP+DEV+RMV EAE+F+KEDKEKRD
Sbjct: 517 IEVKFDIDANGILSVAAIDKGTGKKQDITITGASTLPSDEVERMVNEAEKFSKEDKEKRD 576
Query: 601 AIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAAL 660
AIDTKNQADSVVYQTEKQLKELGDKVP VK KVE KL ELKDAI+ GSTQA+KD MAAL
Sbjct: 577 AIDTKNQADSVVYQTEKQLKELGDKVPGPVKEKVEAKLGELKDAISGGSTQAIKDAMAAL 636
Query: 661 NQEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
NQEVMQLGQSLYNQPGA A G P PGA++G S+SS KG DGDVIDADFTDSK
Sbjct: 637 NQEVMQLGQSLYNQPGAAGAGGPTP-PGADSGPSESSGKGPDGDVIDADFTDSK 689
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255570990|ref|XP_002526446.1| heat shock protein, putative [Ricinus communis] gi|223534226|gb|EEF35941.1| heat shock protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1220 bits (3157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/712 (87%), Positives = 650/712 (91%), Gaps = 10/712 (1%)
Query: 3 CSSAAQIHFLGNISFSSRKNSKTGRENTAGSRNLFFGQRVGGNRFGSVPSAAFLRLKSEN 62
SS AQIH LG I F S K+ K + + +F G + ++ +AAFLR + N
Sbjct: 2 ASSTAQIHVLGGIGFPSSKSRKPSF--SFPKKTVFLGSNLKSHQ-----TAAFLRQSNTN 54
Query: 63 RGRRYVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR 122
R+Y GP+RVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR
Sbjct: 55 ARRKY-GPLRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR 113
Query: 123 LVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGK 182
LVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSYRVVRDENGNVKL+CPAIGK
Sbjct: 114 LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGK 173
Query: 183 QFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRI 242
QFAAEEISAQVLRKLVDDASKFLND VTKAVVTVPAYFNDSQRTATKDAGRIAGL+VLRI
Sbjct: 174 QFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 233
Query: 243 INEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 302
INEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD
Sbjct: 234 INEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 293
Query: 303 KRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGP 362
KRIVDWLA NFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGP
Sbjct: 294 KRIVDWLAGNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGP 353
Query: 363 KHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELV 422
KHI+TT+TR KFEELCSDLLDRLKTPVE SLRDAKLSFKD+DEVILVGGSTRIPAVQELV
Sbjct: 354 KHIETTITRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDIDEVILVGGSTRIPAVQELV 413
Query: 423 KKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIP 482
KKMTG++PNVTVNPDEVVALGAAVQAGVL+GDVSDIVLLDVTPLSLGLETLGGVMTKIIP
Sbjct: 414 KKMTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSLGLETLGGVMTKIIP 473
Query: 483 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 542
RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE
Sbjct: 474 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 533
Query: 543 VKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAI 602
VKFDIDANGILSV+A+DKGTGKKQDITITGASTLP+DEV+RMV EAERFAKEDKEKRDAI
Sbjct: 534 VKFDIDANGILSVTAIDKGTGKKQDITITGASTLPSDEVERMVSEAERFAKEDKEKRDAI 593
Query: 603 DTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQ 662
DTKNQADSVVYQTEKQLKELGDKVPA VK KVE KLKELKDAI GSTQ MKD MAALNQ
Sbjct: 594 DTKNQADSVVYQTEKQLKELGDKVPAPVKEKVEAKLKELKDAIEGGSTQGMKDAMAALNQ 653
Query: 663 EVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
EVMQLGQSLYNQ GA G +SDSS+KG +GDVIDADFTDSK
Sbjct: 654 EVMQLGQSLYNQ--PGAGGAGPAPGGEAGPSSDSSSKGPEGDVIDADFTDSK 703
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357445271|ref|XP_003592913.1| Heat shock protein [Medicago truncatula] gi|92870233|gb|ABE79560.1| Chaperone DnaK [Medicago truncatula] gi|355481961|gb|AES63164.1| Heat shock protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1220 bits (3156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/716 (86%), Positives = 657/716 (91%), Gaps = 11/716 (1%)
Query: 1 MACSSAAQIHFLGNISFSS-RKNSKTGRENTAGSRNLFFGQRVGGNRFGSVPSAAFLRLK 59
MA SSAAQIH LG FS RK S + +++ S+ LFFG R+ N + P AAF +L
Sbjct: 1 MASSSAAQIHGLG---FSPLRKPSSSTSNSSSYSKTLFFGHRLNSNH-ATFPRAAFPKLS 56
Query: 60 SENRGRRYVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN 119
+ + + RVVNEKVVGIDLGTTNSAVAAMEGGKPTI+TNAEGQRTTPSVVAYTKN
Sbjct: 57 TNRKPFTF----RVVNEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYTKN 112
Query: 120 GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPA 179
GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSYRV+RD+NGNVKL+CPA
Sbjct: 113 GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVIRDDNGNVKLDCPA 172
Query: 180 IGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDV 239
IGK FAAEEISAQVLRKLVDDASKFLND VTKAVVTVPAYFNDSQRTATKDAGRIAGL+V
Sbjct: 173 IGKSFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEV 232
Query: 240 LRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGD 299
LRIINEPTAASLAYGFE+KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGD
Sbjct: 233 LRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGD 292
Query: 300 DFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATA 359
DFDKR+VDWLA +FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATA
Sbjct: 293 DFDKRVVDWLAGDFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATA 352
Query: 360 DGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQ 419
DGPKHI+TTLTR KFEELCSDLLDRL+TPVE SLRDAKLS KD+DEVILVGGSTRIPAVQ
Sbjct: 353 DGPKHIETTLTRAKFEELCSDLLDRLRTPVENSLRDAKLSIKDIDEVILVGGSTRIPAVQ 412
Query: 420 ELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTK 479
ELVKKMTG++PNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDV+PLSLGLETLGGVMTK
Sbjct: 413 ELVKKMTGKDPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVSPLSLGLETLGGVMTK 472
Query: 480 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 539
IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP
Sbjct: 473 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 532
Query: 540 QIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKR 599
QIEVKFDIDANGILSV+A+DKGTGKKQDITITGASTLP DEV+RMV EAERF+KEDKEKR
Sbjct: 533 QIEVKFDIDANGILSVAAIDKGTGKKQDITITGASTLPGDEVERMVNEAERFSKEDKEKR 592
Query: 600 DAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAA 659
DAIDTKNQADSVVYQTEKQLKELG+KVP VK KVE KL ELKDAI+ GSTQ MKD MAA
Sbjct: 593 DAIDTKNQADSVVYQTEKQLKELGEKVPGPVKEKVEAKLVELKDAISGGSTQTMKDAMAA 652
Query: 660 LNQEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSSN-KGQDGDVIDADFTDSK 714
LNQEVMQLGQSLYNQPGA A G P PG+E+G +DSS+ KG DGDVIDADFTDSK
Sbjct: 653 LNQEVMQLGQSLYNQPGAADAAGPTP-PGSESGPTDSSSGKGADGDVIDADFTDSK 707
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442347|ref|XP_004138943.1| PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Cucumis sativus] gi|449527805|ref|XP_004170900.1| PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Cucumis sativus] gi|124245039|gb|ABM92419.1| chloroplast HSP70 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1219 bits (3154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/713 (87%), Positives = 666/713 (93%), Gaps = 10/713 (1%)
Query: 4 SSAAQIHFLGNISFSSRKNSKTGRENTAGSRNLFFGQRVGGNRFGSVPSAAFLRLKSENR 63
+S AQIH LG SF++ K+ N SR++FFGQ++G + + P+AAFL L+S N
Sbjct: 3 ASTAQIHGLGAPSFAAASMRKS---NNVSSRSVFFGQKLGNS--SAFPAAAFLNLRS-NT 56
Query: 64 GRR--YVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD 121
RR V P+R+VNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD
Sbjct: 57 SRRNSSVRPLRIVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD 116
Query: 122 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIG 181
RLVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSYRVVRDENGNVKLECPAIG
Sbjct: 117 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLECPAIG 176
Query: 182 KQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLR 241
KQFAAEEISAQVLRKLVDDASKFLND VTKAVVTVPAYFNDSQRTATKDAGRIAGL+VLR
Sbjct: 177 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR 236
Query: 242 IINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 301
IINEPTAASLAYGFEKK+NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF
Sbjct: 237 IINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 296
Query: 302 DKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG 361
DKRIVDWLA+NFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ NISLPFITATADG
Sbjct: 297 DKRIVDWLAANFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQANISLPFITATADG 356
Query: 362 PKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQEL 421
PKHI+TT+TR KFEELCSDLLDRLKTPVE SLRDAKLSFKD+DEVILVGGSTRIPAVQEL
Sbjct: 357 PKHIETTITRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDIDEVILVGGSTRIPAVQEL 416
Query: 422 VKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKII 481
VKKMTG+EPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDV+PLSLGLETLGGVMTKII
Sbjct: 417 VKKMTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVSPLSLGLETLGGVMTKII 476
Query: 482 PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 541
PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI
Sbjct: 477 PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 536
Query: 542 EVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDA 601
EVKFDIDANGILSV+A+DKGTGKKQDITITGASTLP+DEV+RMV EA++FAKEDKEKRDA
Sbjct: 537 EVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPSDEVERMVSEADKFAKEDKEKRDA 596
Query: 602 IDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALN 661
IDTKNQADSVVYQTEKQLKELGDKVP VK KVE KL ELK+AI+ GST+A+K+ MAALN
Sbjct: 597 IDTKNQADSVVYQTEKQLKELGDKVPGPVKEKVESKLGELKEAISGGSTEAIKEAMAALN 656
Query: 662 QEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
QEVMQLGQSLYNQPGAGAAPG G + +E+G S+S+ KG +GDVIDADF+DSK
Sbjct: 657 QEVMQLGQSLYNQPGAGAAPGPGAS--SESGPSESTGKGPEGDVIDADFSDSK 707
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1143427|emb|CAA52149.1| heat shock protein 70 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1216 bits (3146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/713 (87%), Positives = 665/713 (93%), Gaps = 10/713 (1%)
Query: 4 SSAAQIHFLGNISFSSRKNSKTGRENTAGSRNLFFGQRVGGNRFGSVPSAAFLRLKSENR 63
+S AQIH LG SF++ K+ N SR++FFGQ++G + + P+AAFL L+S N
Sbjct: 3 ASTAQIHGLGAPSFAAASMRKS---NNVSSRSVFFGQKLGNS--SAFPAAAFLNLRS-NT 56
Query: 64 GRR--YVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD 121
RR V P+R+VNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD
Sbjct: 57 SRRNSSVRPLRIVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD 116
Query: 122 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIG 181
RLVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSYRV RDENGNVKLECPAIG
Sbjct: 117 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVERDENGNVKLECPAIG 176
Query: 182 KQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLR 241
KQFAAEEISAQVLRKLVDDASKFLND VTKAVVTVPAYFNDSQRTATKDAGRIAGL+VLR
Sbjct: 177 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR 236
Query: 242 IINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 301
IINEPTAASLAYGFEKK+NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF
Sbjct: 237 IINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 296
Query: 302 DKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG 361
DKRIVDWLA+NFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ NISLPFITATADG
Sbjct: 297 DKRIVDWLAANFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQANISLPFITATADG 356
Query: 362 PKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQEL 421
PKHI+TT+TR KFEELCSDLLDRLKTPVE SLRDAKLSFKD+DEVILVGGSTRIPAVQEL
Sbjct: 357 PKHIETTITRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDIDEVILVGGSTRIPAVQEL 416
Query: 422 VKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKII 481
VKKMTG+EPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDV+PLSLGLETLGGVMTKII
Sbjct: 417 VKKMTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVSPLSLGLETLGGVMTKII 476
Query: 482 PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 541
PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI
Sbjct: 477 PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 536
Query: 542 EVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDA 601
EVKFDIDANGILSV+A+DKG+GKKQDITITGASTLP+DEV+RMV EA++FAKEDKEKRDA
Sbjct: 537 EVKFDIDANGILSVTAIDKGSGKKQDITITGASTLPSDEVERMVSEADKFAKEDKEKRDA 596
Query: 602 IDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALN 661
IDTKNQADSVVYQTEKQLKELGDKVP VK KVE KL ELK+AI+ GST+A+K+ MAALN
Sbjct: 597 IDTKNQADSVVYQTEKQLKELGDKVPGPVKEKVESKLGELKEAISGGSTEAIKEAMAALN 656
Query: 662 QEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
QEVMQLGQSLYNQPGAGAAPG G + +E+G S+S+ KG +GDVIDADF+DSK
Sbjct: 657 QEVMQLGQSLYNQPGAGAAPGPGAS--SESGPSESTGKGPEGDVIDADFSDSK 707
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129424|ref|XP_002328713.1| predicted protein [Populus trichocarpa] gi|222839011|gb|EEE77362.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1209 bits (3129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/717 (88%), Positives = 659/717 (91%), Gaps = 18/717 (2%)
Query: 3 CSSAAQIHFLGNI----SFSSRKNSKTGRENTAGSRNLFFGQRVGGNRFGSVPSAAFLRL 58
SSAAQIH LG S SSRK + + R++FFGQ + + FL+
Sbjct: 2 ASSAAQIHGLGVGGGIGSTSSRKPT-----FSFAPRSVFFGQNLRKT------TVTFLKH 50
Query: 59 KSENRGRRY-VGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT 117
+ RRY GPVR+VNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT
Sbjct: 51 TNNTSRRRYSTGPVRIVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT 110
Query: 118 KNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLEC 177
KNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSY+VVRDENGNVKLEC
Sbjct: 111 KNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYKVVRDENGNVKLEC 170
Query: 178 PAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGL 237
PAIGKQFAAEEISAQVLRKLVDDASKFLND VTKAVVTVPAYFNDSQRTATKDAGRIAGL
Sbjct: 171 PAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGL 230
Query: 238 DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG 297
+VLRIINEPTAASLAYGFE+K+NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG
Sbjct: 231 EVLRIINEPTAASLAYGFERKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG 290
Query: 298 GDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITA 357
GDDFDKR+VDWLA +FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITA
Sbjct: 291 GDDFDKRVVDWLAGSFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITA 350
Query: 358 TADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPA 417
TADGPKHI+TTLTR KFEELCSDLLDRLKTPVE SLRDAKLSFKDLDEVILVGGSTRIPA
Sbjct: 351 TADGPKHIETTLTRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDLDEVILVGGSTRIPA 410
Query: 418 VQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVM 477
VQELVKK+TG++PNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDV+PLSLGLETLGGVM
Sbjct: 411 VQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVSPLSLGLETLGGVM 470
Query: 478 TKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRG 537
TKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRG
Sbjct: 471 TKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRG 530
Query: 538 VPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKE 597
VPQIEVKFDIDANGILSV+A+DKGTGKKQDITITGASTLP+DEV RMV EAE+FAKEDKE
Sbjct: 531 VPQIEVKFDIDANGILSVAAIDKGTGKKQDITITGASTLPSDEVGRMVSEAEKFAKEDKE 590
Query: 598 KRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTM 657
KRDAIDTKNQADSVVYQTEKQLKELG+KVPA VK KVE KL+ELKDA+A GSTQ MKD M
Sbjct: 591 KRDAIDTKNQADSVVYQTEKQLKELGEKVPAPVKEKVEAKLQELKDAVAGGSTQGMKDAM 650
Query: 658 AALNQEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
AALNQEVMQLGQSLYNQ GAAPGAGP PG+EAG SDSSNKG DGDVIDADFTDSK
Sbjct: 651 AALNQEVMQLGQSLYNQ--PGAAPGAGPAPGSEAGPSDSSNKGPDGDVIDADFTDSK 705
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|166919372|gb|ABZ04081.1| chloroplast heat shock protein 70-2 [Ipomoea nil] | Back alignment and taxonomy information |
|---|
Score = 1203 bits (3113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/712 (86%), Positives = 646/712 (90%), Gaps = 13/712 (1%)
Query: 3 CSSAAQIHFLGNISFSSRKNSKTGRENTAGSRNLFFGQRVGGNRFGSVPSAAFLRLKSEN 62
SS AQIH LG FS++ +S + + +FFGQR+ FG + LK
Sbjct: 2 ASSTAQIHALGATHFSTKPSSLSKKP----PGTVFFGQRLNKAPFG-------INLKKSA 50
Query: 63 RGRRYVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR 122
RR P RVV EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR
Sbjct: 51 CNRRN-APFRVVAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR 109
Query: 123 LVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGK 182
LVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSY V+RDENGNVKL+CPAIGK
Sbjct: 110 LVGQIAKRQAVVNPENTFFSVKRFIGRKMAEVDEESKQVSYNVIRDENGNVKLDCPAIGK 169
Query: 183 QFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRI 242
QFAAEEISAQVLRKLVDDASKFLND VTKAVVTVPAYFNDSQRTATKDAGRIAGL+VLRI
Sbjct: 170 QFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 229
Query: 243 INEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 302
INEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD
Sbjct: 230 INEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 289
Query: 303 KRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGP 362
KRIVDWLAS+FK+DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITAT+DGP
Sbjct: 290 KRIVDWLASSFKKDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATSDGP 349
Query: 363 KHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELV 422
KHI+TT+TR KFEELCSDLLDRLKTPV+ SLRDAKLSF D+DEVILVGGSTRIPAVQELV
Sbjct: 350 KHIETTITRAKFEELCSDLLDRLKTPVQNSLRDAKLSFSDIDEVILVGGSTRIPAVQELV 409
Query: 423 KKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIP 482
KK+TG++PNVTVNPDEVVALGAAVQAGVL+GDVSDIVLLDVTPLS+GLETLGGVMTKIIP
Sbjct: 410 KKLTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSIGLETLGGVMTKIIP 469
Query: 483 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 542
RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE
Sbjct: 470 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 529
Query: 543 VKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAI 602
VKFDIDANGILSV+AVDKGTGKKQDITITGASTLP+DEV+RMV EAERFA+EDKEKRDAI
Sbjct: 530 VKFDIDANGILSVTAVDKGTGKKQDITITGASTLPSDEVERMVSEAERFAQEDKEKRDAI 589
Query: 603 DTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQ 662
DTKNQADSVVYQTEKQLKELG+KVP VK KVE KL EL+DAI+ GSTQAMKD MAALNQ
Sbjct: 590 DTKNQADSVVYQTEKQLKELGEKVPGPVKEKVEAKLGELRDAISGGSTQAMKDAMAALNQ 649
Query: 663 EVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
EVMQLGQSLYNQP A G P G+ AG S+SS KG DGDVIDADFTDSK
Sbjct: 650 EVMQLGQSLYNQPSASPGAGPTPGGGS-AGPSESSGKGPDGDVIDADFTDSK 700
|
Source: Ipomoea nil Species: Ipomoea nil Genus: Ipomoea Family: Convolvulaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120086|ref|XP_002331133.1| predicted protein [Populus trichocarpa] gi|222872861|gb|EEF09992.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1202 bits (3109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/713 (87%), Positives = 654/713 (91%), Gaps = 9/713 (1%)
Query: 3 CSSAAQIHFLGNISFSSRKNSKTGRENTAGSRNLFFGQRVGGNRFGSVPSAAFLRLKSEN 62
SS AQIH LG +S R + A ++FFGQ + G +A L+ +
Sbjct: 2 ASSTAQIHVLGGGGGIGGTSSIKPRFSFAPRSSVFFGQNLRGT------TATSLKHTNNT 55
Query: 63 RGRRY-VGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD 121
RRY GPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD
Sbjct: 56 SRRRYSTGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD 115
Query: 122 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIG 181
RLVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSYRVVRDENGNVKLECPAIG
Sbjct: 116 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLECPAIG 175
Query: 182 KQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLR 241
KQFAAEEISAQVLRKLVDDASKFLND VTKAVVTVPAYFNDSQRTATKDAGRIAGL+VLR
Sbjct: 176 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR 235
Query: 242 IINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 301
IINEPTAASLAYGFE+KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF
Sbjct: 236 IINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 295
Query: 302 DKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG 361
DKR+VDWLA +FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG
Sbjct: 296 DKRVVDWLAGDFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG 355
Query: 362 PKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQEL 421
PKHI+TTLTR KFEELCSDLLDRLKTPVE SLRDAKLSFKDLDEVILVGGSTRIPAVQ L
Sbjct: 356 PKHIETTLTRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQGL 415
Query: 422 VKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKII 481
VKK+TG++PNVTVNPDEVVALGAAVQAGVL+GDVSDIVLLDVTPLS+GLETLGGVMTKII
Sbjct: 416 VKKLTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSIGLETLGGVMTKII 475
Query: 482 PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 541
PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI
Sbjct: 476 PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 535
Query: 542 EVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDA 601
EVKFDIDANGILSV+A+DKGTGKKQDITITGASTLP+DEV+RMV EA++FAKEDKEKRDA
Sbjct: 536 EVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPSDEVERMVSEADKFAKEDKEKRDA 595
Query: 602 IDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALN 661
IDTKNQADSVVYQTEKQLKELG+KVPA VK KVE KL+ELKDAIA GSTQ MKD M ALN
Sbjct: 596 IDTKNQADSVVYQTEKQLKELGEKVPAPVKEKVEAKLQELKDAIAGGSTQVMKDAMTALN 655
Query: 662 QEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
QEVMQLGQSLYNQ GAAPGAGP PG EAG +DSS+KG DGDVIDADFTDSK
Sbjct: 656 QEVMQLGQSLYNQ--PGAAPGAGPAPGGEAGPTDSSSKGPDGDVIDADFTDSK 706
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2654208|gb|AAB91471.1| heat shock 70 protein [Spinacia oleracea] gi|2773050|gb|AAB96659.1| heat shock 70 protein [Spinacia oleracea] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/723 (86%), Positives = 653/723 (90%), Gaps = 20/723 (2%)
Query: 3 CSSAAQIHFLGNISFSSRKNSKTGRENTAGSRNLFFGQRVG------GNRFGSVPSAAFL 56
SSA QIH LG F++ + + ++ ++FFGQ++ GN P +AFL
Sbjct: 2 ASSATQIHVLGATPFTTSSSKPS----SSRPNSVFFGQKMSPSTACIGN-----PKSAFL 52
Query: 57 RLKSENRGRRY---VGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSV 113
RLK + GRR VGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSV
Sbjct: 53 RLKKSSGGRRRSAGVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSV 112
Query: 114 VAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNV 173
VAYTKNG+RLVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSY VVRDEN NV
Sbjct: 113 VAYTKNGERLVGQIAKRQAVVNPENTFFSVKRFIGRKMTEVDEESKQVSYTVVRDENNNV 172
Query: 174 KLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGR 233
KLECPAIGKQFAAEEISAQVLRKLVDDASKFLND VTKAVVTVPAYFNDSQRTATKDAGR
Sbjct: 173 KLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGR 232
Query: 234 IAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGD 293
IAGL+VLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGD
Sbjct: 233 IAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGD 292
Query: 294 THLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLP 353
THLGGDDFDKRIVDWLAS+FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ NISLP
Sbjct: 293 THLGGDDFDKRIVDWLASSFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQANISLP 352
Query: 354 FITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGST 413
FITATADGPKHI+TTLTR KFEELCSDLLDRL+TPVE SLRDAKLSF DLDEVILVGGST
Sbjct: 353 FITATADGPKHIETTLTRAKFEELCSDLLDRLRTPVENSLRDAKLSFSDLDEVILVGGST 412
Query: 414 RIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETL 473
RIPAV ELVKKMTG+ PNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLS+GLETL
Sbjct: 413 RIPAVIELVKKMTGKAPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSIGLETL 472
Query: 474 GGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPP 533
GGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPP
Sbjct: 473 GGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPP 532
Query: 534 APRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAK 593
APRGVPQ+EVKFDIDANGILSV+A+DKGTGKKQDITITGASTLP DEV+RMV EAE+FAK
Sbjct: 533 APRGVPQVEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPGDEVERMVSEAEKFAK 592
Query: 594 EDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAM 653
EDKEKR+ IDTKNQADSVVYQTEKQLKELG+KVP VK KVE KL ELKDAI G TQA+
Sbjct: 593 EDKEKREVIDTKNQADSVVYQTEKQLKELGEKVPVPVKEKVEAKLGELKDAINGGETQAI 652
Query: 654 KDTMAALNQEVMQLGQSLYNQ--PGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFT 711
KD MAALNQEVMQLGQSLYNQ G G GPTPGAE+G SDS++KG +GDVIDADFT
Sbjct: 653 KDAMAALNQEVMQLGQSLYNQPGAGGEPGAGPGPTPGAESGPSDSTSKGPEGDVIDADFT 712
Query: 712 DSK 714
DSK
Sbjct: 713 DSK 715
|
Source: Spinacia oleracea Species: Spinacia oleracea Genus: Spinacia Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 714 | ||||||
| TAIR|locus:2135897 | 718 | cpHsc70-1 "chloroplast heat sh | 0.991 | 0.986 | 0.798 | 6.2e-291 | |
| TAIR|locus:2158834 | 718 | cpHsc70-2 "chloroplast heat sh | 0.990 | 0.984 | 0.791 | 2.2e-288 | |
| TIGR_CMR|GSU_0033 | 636 | GSU_0033 "chaperone protein dn | 0.878 | 0.985 | 0.550 | 7e-180 | |
| TIGR_CMR|DET_1399 | 637 | DET_1399 "chaperone protein Dn | 0.833 | 0.934 | 0.547 | 1.6e-173 | |
| TIGR_CMR|SPO_0043 | 637 | SPO_0043 "chaperone protein Dn | 0.872 | 0.978 | 0.516 | 1.8e-167 | |
| UNIPROTKB|P0A6Y8 | 638 | dnaK [Escherichia coli K-12 (t | 0.871 | 0.974 | 0.502 | 2.6e-166 | |
| UNIPROTKB|A1A766 | 638 | dnaK "Chaperone protein DnaK" | 0.871 | 0.974 | 0.502 | 2.6e-166 | |
| TAIR|locus:2144801 | 682 | MTHSC70-2 "mitochondrial HSO70 | 0.827 | 0.866 | 0.553 | 2.6e-166 | |
| TAIR|locus:2121022 | 682 | mtHsc70-1 "mitochondrial heat | 0.827 | 0.866 | 0.545 | 2.3e-165 | |
| SGD|S000003806 | 654 | SSC1 "Hsp70 family ATPase" [Sa | 0.833 | 0.909 | 0.532 | 3e-165 |
| TAIR|locus:2135897 cpHsc70-1 "chloroplast heat shock protein 70-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2794 (988.6 bits), Expect = 6.2e-291, P = 6.2e-291
Identities = 574/719 (79%), Positives = 609/719 (84%)
Query: 4 SSAAQIHFLGNISFSSRKNSK---TGRENTAGSRNLFFGQRVGGNRFGSVPSAAFLRLKS 60
SSAAQIH LG I F+S +SK G+ T R+ FFG R G F S P++AFLR+ +
Sbjct: 3 SSAAQIHVLGGIGFASSSSSKRNLNGKGGTFMPRSAFFGTRTGP--F-STPTSAFLRMGT 59
Query: 61 ENXXXXXXXXXX---XXNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT 117
N NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT
Sbjct: 60 RNGGGASRYAVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT 119
Query: 118 KNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLEC 177
K+GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEESKQVSYRVVRDEN NVKLEC
Sbjct: 120 KSGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMNEVDEESKQVSYRVVRDENNNVKLEC 179
Query: 178 PAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGL 237
PAI KQFAAEEISAQVLRKLVDDAS+FLND VTKAV+TVPAYFNDSQRTATKDAGRIAGL
Sbjct: 180 PAINKQFAAEEISAQVLRKLVDDASRFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGL 239
Query: 238 DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG 297
+VLRIINEPTAASLAYGF++K NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG
Sbjct: 240 EVLRIINEPTAASLAYGFDRKANETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG 299
Query: 298 GDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITA 357
GDDFDKR+VDWLA+ FK+DEGIDLLKDKQALQRLTE AEKAK+ELSSLTQTN+SLPFITA
Sbjct: 300 GDDFDKRVVDWLAAEFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTNMSLPFITA 359
Query: 358 TADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPA 417
TADGPKHI+TTLTR KFEELCSDLLDR++TPVE SLRDAKLSFKD+DEVILVGGSTRIPA
Sbjct: 360 TADGPKHIETTLTRAKFEELCSDLLDRVRTPVENSLRDAKLSFKDIDEVILVGGSTRIPA 419
Query: 418 VQELVKKMTGREPNVTVNPDEXXXXXXXXXXXXXXXXXSDIVLLDVTPLSLGLETLGGVM 477
VQELV+K+TG+EPNVTVNPDE SDIVLLDVTPLS+GLETLGGVM
Sbjct: 420 VQELVRKVTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSIGLETLGGVM 479
Query: 478 TKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRG 537
TKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRG
Sbjct: 480 TKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRG 539
Query: 538 VPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKE 597
VPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLP DEV +MVQEAERFAK+DKE
Sbjct: 540 VPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPKDEVDQMVQEAERFAKDDKE 599
Query: 598 KRDAIDTKNQADSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTM 657
KRDAIDTKNQADSVVYQTEKQLKELG+K+P D I GSTQ +KD M
Sbjct: 600 KRDAIDTKNQADSVVYQTEKQLKELGEKIPGEVKEKVEAKLQELKDKIGSGSTQEIKDAM 659
Query: 658 AALNQEVMQLGQSLYNQXXXXXXXXXXXXXXXXXXXSDSSN-KGQDGD-VIDADFTDSK 714
AALNQEVMQ+GQSLYNQ DSS+ KG DGD VIDADFTDS+
Sbjct: 660 AALNQEVMQIGQSLYNQPGAGGPGAGPSPGGEGASSGDSSSSKGGDGDDVIDADFTDSQ 718
|
|
| TAIR|locus:2158834 cpHsc70-2 "chloroplast heat shock protein 70-2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2770 (980.1 bits), Expect = 2.2e-288, P = 2.2e-288
Identities = 568/718 (79%), Positives = 609/718 (84%)
Query: 4 SSAAQIHFLGNISF--SSRKNSKTGRENTAGS--RNLFFGQRVGGNRFGSVPSAAFLRL- 58
SSAAQIH LG I F SS +S +N S R++FFG R + F + P++AFLR+
Sbjct: 3 SSAAQIHILGGIGFPTSSSSSSTKNLDNKTNSIPRSVFFGNRT--SPF-TTPTSAFLRMG 59
Query: 59 -KSENXXXXXXXXXXXXNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT 117
++ N NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT
Sbjct: 60 RRNNNASRYTVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT 119
Query: 118 KNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLEC 177
K+ DRLVGQIAKRQAVVNPENTFFSVKRFIGR+M EV EESKQVSYRV++DENGNVKL+C
Sbjct: 120 KSKDRLVGQIAKRQAVVNPENTFFSVKRFIGRRMNEVAEESKQVSYRVIKDENGNVKLDC 179
Query: 178 PAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGL 237
PAIGKQFAAEEISAQVLRKLVDDAS+FLND VTKAV+TVPAYFNDSQRTATKDAGRIAGL
Sbjct: 180 PAIGKQFAAEEISAQVLRKLVDDASRFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGL 239
Query: 238 DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG 297
+VLRIINEPTAASLAYGFE+K+NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG
Sbjct: 240 EVLRIINEPTAASLAYGFERKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG 299
Query: 298 GDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITA 357
GDDFDKR+VDWLAS FK+DEGIDLLKDKQALQRLTE AEKAK+ELSSLTQTN+SLPFITA
Sbjct: 300 GDDFDKRVVDWLASTFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTNMSLPFITA 359
Query: 358 TADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPA 417
TADGPKHI+TTLTR KFEELCSDLLDR++TPVE SLRDAKLSFKD+DEVILVGGSTRIPA
Sbjct: 360 TADGPKHIETTLTRGKFEELCSDLLDRVRTPVENSLRDAKLSFKDIDEVILVGGSTRIPA 419
Query: 418 VQELVKKMTGREPNVTVNPDEXXXXXXXXXXXXXXXXXSDIVLLDVTPLSLGLETLGGVM 477
VQ+LV+K+TG+EPNV+VNPDE SDIVLLDVTPLSLGLETLGGVM
Sbjct: 420 VQDLVRKLTGKEPNVSVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSLGLETLGGVM 479
Query: 478 TKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRG 537
TKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKS+GSFRLDGIPPAPRG
Sbjct: 480 TKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSIGSFRLDGIPPAPRG 539
Query: 538 VPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKE 597
VPQIEVKFDIDANGILSVSA DKGTGKKQDITITGASTLP DEV MVQEAERFAKEDKE
Sbjct: 540 VPQIEVKFDIDANGILSVSASDKGTGKKQDITITGASTLPKDEVDTMVQEAERFAKEDKE 599
Query: 598 KRDAIDTKNQADSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTM 657
KRDAIDTKNQADSVVYQTEKQLKELG+K+P + IA GSTQ +KDTM
Sbjct: 600 KRDAIDTKNQADSVVYQTEKQLKELGEKIPGPVKEKVEAKLQELKEKIASGSTQEIKDTM 659
Query: 658 AALNQEVMQLGQSLYNQXXXXXXXXXXXXXXXXXXXSDSSNKGQD--GDVIDADFTDS 713
AALNQEVMQ+GQSLYNQ + SS KG D GDVIDADFTDS
Sbjct: 660 AALNQEVMQIGQSLYNQPQPGGADSPPGGEASSSSDTSSSAKGGDNGGDVIDADFTDS 717
|
|
| TIGR_CMR|GSU_0033 GSU_0033 "chaperone protein dnaK" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1746 (619.7 bits), Expect = 7.0e-180, P = 7.0e-180
Identities = 353/641 (55%), Positives = 458/641 (71%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
KV+GIDLGTTNS VA MEGG+P ++ NAEG RTTPS+VA+ ++G+RLVGQ AKRQAV NP
Sbjct: 3 KVIGIDLGTTNSCVAVMEGGEPVVIANAEGSRTTPSMVAFAESGERLVGQQAKRQAVTNP 62
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVS---YRVVRDENGNVKLECPAIGKQFAAEEISAQV 193
ENT F++KR IGRK + +E K +S +++V+ +NG+ +E A GK ++A EISA V
Sbjct: 63 ENTLFAIKRLIGRKY-DTEEVRKDISISPFKIVKADNGDAWVE--ARGKMYSAPEISAMV 119
Query: 194 LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAY 253
L+K+ A +L ++VT AV+TVPAYFNDSQR ATKDAG+IAGL+VLRIINEPTAA+LAY
Sbjct: 120 LQKMKQTAEDYLGETVTDAVITVPAYFNDSQRQATKDAGKIAGLNVLRIINEPTAAALAY 179
Query: 254 GFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 313
G +KK +E I VFDLGGGTFD+S+LE+GDGVFEV ST+GDT LGG+DFD+R++DW+A F
Sbjct: 180 GLDKKKDEKIAVFDLGGGTFDISILELGDGVFEVKSTNGDTFLGGEDFDQRVIDWIADEF 239
Query: 314 KRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVK 373
K+D+GIDL DK ALQRL E AEKAK ELS+ +T+I+LPFITA A GPKH+ L+R K
Sbjct: 240 KKDQGIDLRGDKMALQRLKEAAEKAKCELSTSMETDINLPFITADATGPKHLTMKLSRAK 299
Query: 374 FEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVT 433
E LC+DLL++L+ P T+L+DA LS ++DEVILVGG TR+PAVQ+ V+++ G+ PN
Sbjct: 300 LEALCADLLNKLEGPCRTALKDAGLSPSEVDEVILVGGMTRMPAVQKRVQEIFGKVPNKG 359
Query: 434 VNPDEXXXXXXXXXXXXXXXXXSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSE 493
VNPDE D++LLDVTPLSLG+ETLG VMTK+I +NTT+P KS+
Sbjct: 360 VNPDEVVAIGAAIQGGVLRGDVKDVLLLDVTPLSLGIETLGSVMTKLIEKNTTIPCRKSQ 419
Query: 494 VFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGIL 553
VFSTA+D Q +V I+VLQGERE DNK+LG+F L GIPPAPRGVPQIEV FDIDANGI+
Sbjct: 420 VFSTASDNQPAVTIHVLQGEREMAIDNKTLGNFELTGIPPAPRGVPQIEVTFDIDANGIV 479
Query: 554 SVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVY 613
VSA D GTGK+Q I IT +S L +E+ +MV+EAE + EDK+KR+ ++ +N AD++ Y
Sbjct: 480 HVSAKDLGTGKEQSIRITASSGLSKEEIDKMVKEAEAHSAEDKKKRELVEARNHADTLSY 539
Query: 614 QTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSLYN 673
TEK LKE GDK+ A A+ + +K L Q +L +++Y
Sbjct: 540 STEKSLKEYGDKIGADEKAKIEECLANLRKAMEGSDVEVLKKATDELTQASHKLAEAVYA 599
Query: 674 QXXXXXXXXXXXXXXXXXXXSDSSNKGQDGDVIDADFTDSK 714
+ ++S K D V+DADF + K
Sbjct: 600 KAQAEGAQPGGEAA------GEASAK--DEKVVDADFEEVK 632
|
|
| TIGR_CMR|DET_1399 DET_1399 "chaperone protein DnaK" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 1686 (598.6 bits), Expect = 1.6e-173, P = 1.6e-173
Identities = 332/606 (54%), Positives = 437/606 (72%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
KVVGIDLGTTNS VA M+GG+P ++ +AEG PSVVA KNG+R+VG+ AK QA++NP
Sbjct: 3 KVVGIDLGTTNSEVAVMQGGEPVVIPSAEGSTLIPSVVAVNKNGERIVGRQAKNQAILNP 62
Query: 137 ENTFFSVKRFIGRKMVE-------VDEESKQVSYRVVRDENGNVKLECPAIG-KQFAAEE 188
ENT +S+KRF+GRK E V+ ++K+ Y+V++ N V++ +G K F+ E
Sbjct: 63 ENTVYSIKRFMGRKWGEPAGRELPVEADAKRKPYKVIQGNNNEVRV---VMGDKDFSPPE 119
Query: 189 ISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTA 248
+SA +L+KL DA +L + VT+AV+TVPAYFND+QR ATKDAG IAGL VLRIINEPTA
Sbjct: 120 VSAMILQKLKSDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGAIAGLKVLRIINEPTA 179
Query: 249 ASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 308
A+LAYG +KK +ETI V+DLGGGTFD+S+LE+G+G F+V ST+GDTHLGGDDFD++I+DW
Sbjct: 180 AALAYGLDKKKDETIAVYDLGGGTFDISILELGEGTFQVKSTAGDTHLGGDDFDQKIIDW 239
Query: 309 LASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTT 368
L + +K+D+GIDL KDK ALQRL E AEKAK+ELS++ Q I+LPFITA A GPKH++
Sbjct: 240 LIAEYKKDQGIDLSKDKTALQRLKEAAEKAKIELSTVQQAEINLPFITADASGPKHLNII 299
Query: 369 LTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR 428
LTR K E++ DL+D+ P +L+D+ + +++EVILVGG TR+P VQ+ VK+ G+
Sbjct: 300 LTRAKLEQMVMDLVDKSLEPCRQALKDSGKTASEINEVILVGGQTRMPLVQQKVKEFFGK 359
Query: 429 EPNVTVNPDEXXXXXXXXXXXXXXXXXSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLP 488
EPN VNPDE SD++LLDV PL+LG+ETLGGV T +I RNTT+P
Sbjct: 360 EPNKGVNPDEVVAIGAAIQAGVLKGEVSDVLLLDVIPLTLGIETLGGVSTALITRNTTIP 419
Query: 489 TSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 548
TSKS+VFSTAAD Q SVEI+VLQGER DN++LG F LDGI PAPRGVPQIEV FDID
Sbjct: 420 TSKSQVFSTAADNQPSVEIHVLQGERPMAADNRTLGRFMLDGILPAPRGVPQIEVTFDID 479
Query: 549 ANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQA 608
ANGILSV A DKGTG++Q ITIT +S L +EV++M +EAE A ED ++++ I+ +N A
Sbjct: 480 ANGILSVKAKDKGTGREQKITITASSGLSKEEVEKMTREAEAHAAEDSKRKEEIEARNVA 539
Query: 609 DSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLG 668
D++ Y EK L++ DK+PA A+ A+K T L+ + +G
Sbjct: 540 DNLAYNAEKTLRDNKDKIPAELNTELESKIAAVRTALQGTDVDAIKTTTQELSTALQSVG 599
Query: 669 QSLYNQ 674
++Y Q
Sbjct: 600 SAVYGQ 605
|
|
| TIGR_CMR|SPO_0043 SPO_0043 "chaperone protein DnaK" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1629 (578.5 bits), Expect = 1.8e-167, P = 1.8e-167
Identities = 331/641 (51%), Positives = 444/641 (69%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
KV+GIDLGTTNS VA M+G +P ++ N+EG RTTPS+VA+T +RLVGQ AKRQAV NP
Sbjct: 3 KVIGIDLGTTNSCVAIMDGAQPKVIENSEGARTTPSIVAFTDE-ERLVGQPAKRQAVTNP 61
Query: 137 ENTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVL 194
NT F VKR IGR++ EV ++ K V + +V NG+ +E A G++++ +ISA +L
Sbjct: 62 SNTIFGVKRLIGRRVDDAEVTKDKKMVPFTIVNGGNGDAWVE--AKGEKYSPSQISAVIL 119
Query: 195 RKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
K+ + A +L + VT+AV+TVPAYFND+QR ATKDAG+IAGL+VLRIINEPTAA+LAYG
Sbjct: 120 GKMKETAESYLGEEVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 179
Query: 255 FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314
+KKN++TI V+DLGGGTFDV++LE+ DG+FEV ST+GDT LGG+DFD RIV++LA FK
Sbjct: 180 LDKKNSQTIAVYDLGGGTFDVTILEIDDGLFEVKSTNGDTFLGGEDFDMRIVNYLADEFK 239
Query: 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG-PKHIDTTLTRVK 373
++ G+DL DK ALQRL E AEKAK+ELSS TQT I+ PFI+ A+G P H+ LTR K
Sbjct: 240 KEHGVDLSGDKMALQRLKEAAEKAKIELSSTTQTEINQPFISMGANGQPLHLVMKLTRAK 299
Query: 374 FEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVT 433
E L DL+ + P + +L+DA +S D+DEV+LVGG TR+P V E V K G+EP+
Sbjct: 300 LESLVGDLIKKSMDPCKAALKDAGISPSDVDEVVLVGGMTRMPKVFEEVTKFFGKEPHKG 359
Query: 434 VNPDEXXXXXXXXXXXXXXXXXSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSE 493
VNPDE D+VLLDVTPLSLG+ETLGGV T++I RNTT+PT KS+
Sbjct: 360 VNPDEVVAMGAAIQAGVLQGDVKDVVLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQ 419
Query: 494 VFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGIL 553
VFSTA D Q +V I V QGERE DNK LG F L+ IPPAPRG+PQIEV FDIDANGI+
Sbjct: 420 VFSTAEDNQNAVTIRVFQGEREMAADNKILGQFNLEDIPPAPRGMPQIEVTFDIDANGIV 479
Query: 554 SVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVY 613
SVSA DKGTGK+ ITI + L ++++++MV++AE A+ DK +++ ++ +NQA+S+++
Sbjct: 480 SVSAKDKGTGKEHKITIQASGGLSDEDIEKMVKDAEENAEADKARKELVEARNQAESLIH 539
Query: 614 QTEKQLKELGDKV-PAXXXXXXXXXXXXXXDAIAEG-STQAMKDTMAALNQEVMQLGQSL 671
TEK ++E GDKV P D +G S + +K + + + M+LG+++
Sbjct: 540 STEKSVEEHGDKVDPTTVEAIELAIAALKDDLDKDGVSAEKIKSGLQNVTEAAMKLGEAI 599
Query: 672 YNQXXXXXXXXXXXXXXXXXXXSDSSNKGQDGDVIDADFTD 712
Y +D+ + D D++DA+F D
Sbjct: 600 YK--------AQSEGGDDEPAAADA--RPSDDDIVDAEFED 630
|
|
| UNIPROTKB|P0A6Y8 dnaK [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1618 (574.6 bits), Expect = 2.6e-166, P = 2.6e-166
Identities = 326/649 (50%), Positives = 450/649 (69%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
K++GIDLGTTNS VA M+G P ++ NAEG RTTPS++AYT++G+ LVGQ AKRQAV NP
Sbjct: 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVS---YRVVRDENGNVKLECPAIGKQFAAEEISAQV 193
+NT F++KR IGR+ + +E + VS ++++ +NG+ +E G++ A +ISA+V
Sbjct: 63 QNTLFAIKRLIGRRFQD-EEVQRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEV 119
Query: 194 LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAY 253
L+K+ A +L + VT+AV+TVPAYFND+QR ATKDAGRIAGL+V RIINEPTAA+LAY
Sbjct: 120 LKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAY 179
Query: 254 GFEK-KNNETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRIVDW 308
G +K N TI V+DLGGGTFD+S++E+ G+ FEVL+T+GDTHLGG+DFD R++++
Sbjct: 180 GLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239
Query: 309 LASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTT 368
L FK+D+GIDL D A+QRL E AEKAK+ELSS QT+++LP+ITA A GPKH++
Sbjct: 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIK 299
Query: 369 LTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR 428
+TR K E L DL++R P++ +L+DA LS D+D+VILVGG TR+P VQ+ V + G+
Sbjct: 300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGK 359
Query: 429 EPNVTVNPDEXXXXXXXXXXXXXXXXXSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLP 488
EP VNPDE D++LLDVTPLSLG+ET+GGVMT +I +NTT+P
Sbjct: 360 EPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIP 419
Query: 489 TSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 548
T S+VFSTA D Q++V I+VLQGER+ DNKSLG F LDGI PAPRG+PQIEV FDID
Sbjct: 420 TKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479
Query: 549 ANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQA 608
A+GIL VSA DK +GK+Q ITI +S L DE+Q+MV++AE A+ D++ + + T+NQ
Sbjct: 480 ADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQG 539
Query: 609 DSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIA---EGSTQAMKDTMAALNQEVM 665
D +++ T KQ++E GDK+PA A+ + + +A +A ++Q++M
Sbjct: 540 DHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLM 599
Query: 666 QLGQSLYNQXXXXXXXXXXXXXXXXXXXSDSSNKGQDGDVIDADFTDSK 714
++ Q + Q S+N +D DV+DA+F + K
Sbjct: 600 EIAQQQHAQQQTAGADA-------------SANNAKDDDVVDAEFEEVK 635
|
|
| UNIPROTKB|A1A766 dnaK "Chaperone protein DnaK" [Escherichia coli APEC O1 (taxid:405955)] | Back alignment and assigned GO terms |
|---|
Score = 1618 (574.6 bits), Expect = 2.6e-166, P = 2.6e-166
Identities = 326/649 (50%), Positives = 450/649 (69%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
K++GIDLGTTNS VA M+G P ++ NAEG RTTPS++AYT++G+ LVGQ AKRQAV NP
Sbjct: 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVS---YRVVRDENGNVKLECPAIGKQFAAEEISAQV 193
+NT F++KR IGR+ + +E + VS ++++ +NG+ +E G++ A +ISA+V
Sbjct: 63 QNTLFAIKRLIGRRFQD-EEVQRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEV 119
Query: 194 LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAY 253
L+K+ A +L + VT+AV+TVPAYFND+QR ATKDAGRIAGL+V RIINEPTAA+LAY
Sbjct: 120 LKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAY 179
Query: 254 GFEK-KNNETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRIVDW 308
G +K N TI V+DLGGGTFD+S++E+ G+ FEVL+T+GDTHLGG+DFD R++++
Sbjct: 180 GLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239
Query: 309 LASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTT 368
L FK+D+GIDL D A+QRL E AEKAK+ELSS QT+++LP+ITA A GPKH++
Sbjct: 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIK 299
Query: 369 LTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR 428
+TR K E L DL++R P++ +L+DA LS D+D+VILVGG TR+P VQ+ V + G+
Sbjct: 300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGK 359
Query: 429 EPNVTVNPDEXXXXXXXXXXXXXXXXXSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLP 488
EP VNPDE D++LLDVTPLSLG+ET+GGVMT +I +NTT+P
Sbjct: 360 EPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIP 419
Query: 489 TSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 548
T S+VFSTA D Q++V I+VLQGER+ DNKSLG F LDGI PAPRG+PQIEV FDID
Sbjct: 420 TKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479
Query: 549 ANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQA 608
A+GIL VSA DK +GK+Q ITI +S L DE+Q+MV++AE A+ D++ + + T+NQ
Sbjct: 480 ADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQG 539
Query: 609 DSVVYQTEKQLKELGDKVPAXXXXXXXXXXXXXXDAIA---EGSTQAMKDTMAALNQEVM 665
D +++ T KQ++E GDK+PA A+ + + +A +A ++Q++M
Sbjct: 540 DHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLM 599
Query: 666 QLGQSLYNQXXXXXXXXXXXXXXXXXXXSDSSNKGQDGDVIDADFTDSK 714
++ Q + Q S+N +D DV+DA+F + K
Sbjct: 600 EIAQQQHAQQQTAGADA-------------SANNAKDDDVVDAEFEEVK 635
|
|
| TAIR|locus:2144801 MTHSC70-2 "mitochondrial HSO70 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1618 (574.6 bits), Expect = 2.6e-166, P = 2.6e-166
Identities = 330/596 (55%), Positives = 417/596 (69%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
V+GIDLGTTNS VA MEG P ++ NAEG RTTPSVVA+ G+ LVG AKRQAV NP
Sbjct: 59 VIGIDLGTTNSCVAVMEGKNPKVIENAEGARTTPSVVAFNTKGELLVGTPAKRQAVTNPT 118
Query: 138 NTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLR 195
NT KR IGRK + +E K V Y++VR NG+ +E A G+Q++ +I A +L
Sbjct: 119 NTVSGTKRLIGRKFDDPQTQKEMKMVPYKIVRAPNGDAWVE--ANGQQYSPSQIGAFILT 176
Query: 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF 255
K+ + A +L SVTKAVVTVPAYFND+QR ATKDAGRIAGLDV RIINEPTAA+L+YG
Sbjct: 177 KMKETAEAYLGKSVTKAVVTVPAYFNDAQRQATKDAGRIAGLDVERIINEPTAAALSYGM 236
Query: 256 EKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315
K I VFDLGGGTFDVSVLE+ +GVFEV +T+GDT LGG+DFD ++D+L + FK
Sbjct: 237 TNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKT 295
Query: 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFE 375
EGIDL KD+ ALQRL E AEKAK+ELSS +QT I+LPFITA A G KH + TLTR +FE
Sbjct: 296 TEGIDLAKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHFNITLTRSRFE 355
Query: 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVN 435
L + L++R + P + L+DA +S K++DEV+LVGG TR+P VQ +V ++ G+ P+ VN
Sbjct: 356 TLVNHLIERTRDPCKNCLKDAGISAKEVDEVLLVGGMTRVPKVQSIVAEIFGKSPSKGVN 415
Query: 436 PDEXXXXXXXXXXXXXXXXXSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVF 495
PDE +++LLDVTPLSLG+ETLGGV T++I RNTT+PT KS+VF
Sbjct: 416 PDEAVAMGAALQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQVF 475
Query: 496 STAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555
STAAD QT V I VLQGERE DNK LG F L GIPP+PRGVPQIEV FDIDANGI++V
Sbjct: 476 STAADNQTQVGIRVLQGEREMATDNKLLGEFDLVGIPPSPRGVPQIEVTFDIDANGIVTV 535
Query: 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQT 615
SA DK TGK Q ITI + L D++Q+MV+EAE A++DKE+++ IDTKN AD+ +Y
Sbjct: 536 SAKDKTTGKVQQITIRSSGGLSEDDIQKMVREAELHAQKDKERKELIDTKNTADTTIYSI 595
Query: 616 EKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSL 671
EK L E +K+P+ A + +K + A N+ V ++G+ +
Sbjct: 596 EKSLGEYREKIPSEIAKEIEDAVADLRSASSGDDLNEIKAKIEAANKAVSKIGEHM 651
|
|
| TAIR|locus:2121022 mtHsc70-1 "mitochondrial heat shock protein 70-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1609 (571.5 bits), Expect = 2.3e-165, P = 2.3e-165
Identities = 325/596 (54%), Positives = 414/596 (69%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
V+GIDLGTTNS V+ MEG ++ NAEG RTTPSVVA + G+ LVG AKRQAV NP
Sbjct: 54 VIGIDLGTTNSCVSVMEGKTARVIENAEGSRTTPSVVAMNQKGELLVGTPAKRQAVTNPT 113
Query: 138 NTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLR 195
NT F KR IGR+ + +E K V Y++V+ NG+ +E A G++F+ +I A VL
Sbjct: 114 NTIFGSKRLIGRRFDDPQTQKEMKMVPYKIVKAPNGDAWVE--ANGQKFSPSQIGANVLT 171
Query: 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF 255
K+ + A +L S+ KAVVTVPAYFND+QR ATKDAG+IAGLDV RIINEPTAA+L+YG
Sbjct: 172 KMKETAEAYLGKSINKAVVTVPAYFNDAQRQATKDAGKIAGLDVQRIINEPTAAALSYGM 231
Query: 256 EKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315
K I VFDLGGGTFDVS+LE+ GVFEV +T+GDT LGG+DFD ++++L + FKR
Sbjct: 232 NNKEG-VIAVFDLGGGTFDVSILEISSGVFEVKATNGDTFLGGEDFDNTLLEYLVNEFKR 290
Query: 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFE 375
+ IDL KD ALQRL E AEKAK+ELSS TQT I+LPFITA A G KH++ TLTR KFE
Sbjct: 291 SDNIDLTKDNLALQRLREAAEKAKIELSSTTQTEINLPFITADASGAKHLNITLTRSKFE 350
Query: 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVN 435
L L++R ++P + L+DA ++ K++DEV+LVGG TR+P VQE+V ++ G+ P VN
Sbjct: 351 GLVGKLIERTRSPCQNCLKDAGVTIKEVDEVLLVGGMTRVPKVQEIVSEIFGKSPCKGVN 410
Query: 436 PDEXXXXXXXXXXXXXXXXXSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVF 495
PDE D++LLDV PLSLG+ETLG V TK+IPRNTT+PT KS+VF
Sbjct: 411 PDEAVAMGAAIQGGILRGDVKDLLLLDVVPLSLGIETLGAVFTKLIPRNTTIPTKKSQVF 470
Query: 496 STAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555
STAAD Q V I VLQGERE DNK LG F L GIPPAPRG+PQIEV FDIDANGI +V
Sbjct: 471 STAADNQMQVGIKVLQGEREMAADNKVLGEFDLVGIPPAPRGMPQIEVTFDIDANGITTV 530
Query: 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQT 615
SA DK TGK+Q+ITI + L +DE+ RMV+EAE A++D+EK+ ID +N AD+ +Y
Sbjct: 531 SAKDKATGKEQNITIRSSGGLSDDEINRMVKEAELNAQKDQEKKQLIDLRNSADTTIYSV 590
Query: 616 EKQLKELGDKVPAXXXXXXXXXXXXXXDAIAEGSTQAMKDTMAALNQEVMQLGQSL 671
EK L E +K+PA A+A + +K + A N+ V ++G+ +
Sbjct: 591 EKSLSEYREKIPAEIASEIETAVSDLRTAMAGEDVEDIKAKVEAANKAVSKIGEHM 646
|
|
| SGD|S000003806 SSC1 "Hsp70 family ATPase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 1608 (571.1 bits), Expect = 3.0e-165, P = 3.0e-165
Identities = 320/601 (53%), Positives = 419/601 (69%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
V+GIDLGTTNSAVA MEG P I+ NAEG RTTPSVVA+TK G+RLVG AKRQAVVNPE
Sbjct: 32 VIGIDLGTTNSAVAIMEGKVPKIIENAEGSRTTPSVVAFTKEGERLVGIPAKRQAVVNPE 91
Query: 138 NTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLR 195
NT F+ KR IGR+ EV + KQV Y++V+ NG+ +E A G+ ++ +I VL
Sbjct: 92 NTLFATKRLIGRRFEDAEVQRDIKQVPYKIVKHSNGDAWVE--ARGQTYSPAQIGGFVLN 149
Query: 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF 255
K+ + A +L V AVVTVPAYFNDSQR ATKDAG+I GL+VLR++NEPTAA+LAYG
Sbjct: 150 KMKETAEAYLGKPVKNAVVTVPAYFNDSQRQATKDAGQIVGLNVLRVVNEPTAAALAYGL 209
Query: 256 EKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315
EK +++ + VFDLGGGTFD+S+L++ +GVFEV ST+GDTHLGG+DFD ++ + S FK
Sbjct: 210 EKSDSKVVAVFDLGGGTFDISILDIDNGVFEVKSTNGDTHLGGEDFDIYLLREIVSRFKT 269
Query: 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFE 375
+ GIDL D+ A+QR+ E AEKAK+ELSS T I+LPFITA A GPKHI+ +R +FE
Sbjct: 270 ETGIDLENDRMAIQRIREAAEKAKIELSSTVSTEINLPFITADASGPKHINMKFSRAQFE 329
Query: 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVN 435
L + L+ R PV+ +L+DA LS D+ EV+LVGG +R+P V E VK + G++P+ VN
Sbjct: 330 TLTAPLVKRTVDPVKKALKDAGLSTSDISEVLLVGGMSRMPKVVETVKSLFGKDPSKAVN 389
Query: 436 PDEXXXXXXXXXXXXXXXXXSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVF 495
PDE +D++LLDVTPLSLG+ETLGGV T++IPRNTT+PT KS++F
Sbjct: 390 PDEAVAIGAAVQGAVLSGEVTDVLLLDVTPLSLGIETLGGVFTRLIPRNTTIPTKKSQIF 449
Query: 496 STAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555
STAA GQTSVEI V QGERE VRDNK +G+F L GIPPAP+GVPQIEV FDIDA+GI++V
Sbjct: 450 STAAAGQTSVEIRVFQGERELVRDNKLIGNFTLAGIPPAPKGVPQIEVTFDIDADGIINV 509
Query: 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQT 615
SA DK T K IT+ G+S L +E+++MV +AE+F +D+ ++ AI+T N+AD + T
Sbjct: 510 SARDKATNKDSSITVAGSSGLSENEIEQMVNDAEKFKSQDEARKQAIETANKADQLANDT 569
Query: 616 EKQLKELGDKVPAXXXXXXXXXXXXXXDAIA--EGSTQAMKDTMAALNQEVMQLGQSLYN 673
E LKE KV + +A +G + + + +E+ L+
Sbjct: 570 ENSLKEFEGKVDKAEAQKVRDQITSLKELVARVQGGEEVNAEELKTKTEELQTSSMKLFE 629
Query: 674 Q 674
Q
Sbjct: 630 Q 630
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| B4S6P7 | DNAK_PROA2 | No assigned EC number | 0.5959 | 0.8767 | 0.9781 | yes | no |
| B9E041 | DNAK_CLOK1 | No assigned EC number | 0.5893 | 0.8487 | 0.9805 | yes | no |
| Q9LTX9 | HSP7G_ARATH | No assigned EC number | 0.8407 | 0.9873 | 0.9818 | yes | no |
| P49463 | DNAK_ODOSI | No assigned EC number | 0.6279 | 0.8165 | 0.9495 | N/A | no |
| Q9TLT1 | DNAK_CYACA | No assigned EC number | 0.6442 | 0.8641 | 0.9983 | N/A | no |
| P69377 | DNAK_PORUM | No assigned EC number | 0.6583 | 0.8655 | 0.9967 | N/A | no |
| P69376 | DNAK_PORPU | No assigned EC number | 0.6583 | 0.8655 | 0.9967 | N/A | no |
| P22358 | DNAK2_SYNY3 | No assigned EC number | 0.7167 | 0.8795 | 0.9874 | N/A | no |
| Q85FW4 | DNAK_CYAME | No assigned EC number | 0.6765 | 0.8333 | 0.9802 | N/A | no |
| Q7V3T5 | DNAK2_PROMM | No assigned EC number | 0.7190 | 0.8361 | 0.9416 | yes | no |
| Q4G366 | DNAK_EMIHU | No assigned EC number | 0.6786 | 0.8697 | 0.9967 | N/A | no |
| P30721 | DNAK_CLOAB | No assigned EC number | 0.5952 | 0.8487 | 0.9853 | yes | no |
| A0T0X1 | DNAK_THAPS | No assigned EC number | 0.6279 | 0.8165 | 0.9684 | N/A | no |
| A5N6M2 | DNAK_CLOK5 | No assigned EC number | 0.5893 | 0.8487 | 0.9805 | yes | no |
| P29215 | DNAK_GUITH | No assigned EC number | 0.7006 | 0.8753 | 0.9968 | yes | no |
| Q7UZG3 | DNAK2_PROMP | No assigned EC number | 0.7021 | 0.8837 | 0.9952 | yes | no |
| Q8YW74 | DNAK2_NOSS1 | No assigned EC number | 0.7241 | 0.8837 | 0.9968 | yes | no |
| Q02028 | HSP7S_PEA | No assigned EC number | 0.8483 | 0.9887 | 1.0 | N/A | no |
| Q5N1J4 | DNAK2_SYNP6 | No assigned EC number | 0.7026 | 0.8837 | 0.9952 | yes | no |
| A2BZ91 | DNAK_PROM5 | No assigned EC number | 0.7042 | 0.8823 | 0.9936 | yes | no |
| B3EHR1 | DNAK_CHLL2 | No assigned EC number | 0.5984 | 0.8795 | 0.9827 | yes | no |
| Q3B577 | DNAK_PELLD | No assigned EC number | 0.5833 | 0.8823 | 0.9890 | yes | no |
| A8ZRW3 | DNAK_DESOH | No assigned EC number | 0.5890 | 0.8893 | 0.9890 | yes | no |
| Q74H59 | DNAK_GEOSL | No assigned EC number | 0.5865 | 0.8781 | 0.9858 | yes | no |
| Q1XDH2 | DNAK_PORYE | No assigned EC number | 0.6645 | 0.8669 | 0.9967 | N/A | no |
| Q08080 | HSP7S_SPIOL | No assigned EC number | 0.9001 | 0.7997 | 0.9532 | N/A | no |
| P30722 | DNAK_PAVLU | No assigned EC number | 0.6614 | 0.8739 | 0.9920 | N/A | no |
| P50021 | DNAK2_SYNE7 | No assigned EC number | 0.7073 | 0.8837 | 0.9952 | yes | no |
| Q7V9G2 | DNAK2_PROMA | No assigned EC number | 0.6912 | 0.8837 | 0.9968 | yes | no |
| Q37106 | DNAK_CYAPA | No assigned EC number | 0.6661 | 0.8627 | 0.9967 | N/A | no |
| Q6B8V2 | DNAK_GRATL | No assigned EC number | 0.6777 | 0.8613 | 0.9903 | N/A | no |
| A0T0H7 | DNAK_PHATC | No assigned EC number | 0.6404 | 0.8179 | 0.9526 | yes | no |
| Q06W39 | DNAK_PORHA | No assigned EC number | 0.6645 | 0.8669 | 0.9967 | N/A | no |
| Q9STW6 | HSP7F_ARATH | No assigned EC number | 0.85 | 0.9929 | 0.9874 | no | no |
| Q7NDH1 | DNAK_GLOVI | No assigned EC number | 0.6927 | 0.8907 | 0.9968 | yes | no |
| B3QMB2 | DNAK_CHLP8 | No assigned EC number | 0.5975 | 0.8739 | 0.9780 | yes | no |
| Q8DI58 | DNAK2_THEEB | No assigned EC number | 0.7107 | 0.8865 | 0.9890 | yes | no |
| B3EKT9 | DNAK_CHLPB | No assigned EC number | 0.5937 | 0.8739 | 0.9719 | yes | no |
| Q826F6 | DNAK2_STRAW | No assigned EC number | 0.6062 | 0.8781 | 0.9905 | yes | no |
| Q7U3C4 | DNAK2_SYNPX | No assigned EC number | 0.7190 | 0.8361 | 0.9372 | yes | no |
| B4SDA0 | DNAK_PELPB | No assigned EC number | 0.5770 | 0.8795 | 0.9812 | yes | no |
| Q46I76 | DNAK_PROMT | No assigned EC number | 0.6885 | 0.8781 | 0.9952 | yes | no |
| Q3APD2 | DNAK_CHLCH | No assigned EC number | 0.5931 | 0.8501 | 0.9529 | yes | no |
| A4SFB1 | DNAK_PROVI | No assigned EC number | 0.5835 | 0.8809 | 0.9905 | yes | no |
| A1BET8 | DNAK_CHLPD | No assigned EC number | 0.5842 | 0.8809 | 0.9828 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 714 | |||
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 0.0 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 0.0 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 0.0 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 0.0 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 0.0 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 0.0 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 0.0 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 0.0 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-162 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 1e-153 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 1e-149 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-144 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-135 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-125 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-116 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-103 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 8e-96 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 1e-85 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 2e-79 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 2e-74 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 1e-66 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 2e-66 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 2e-64 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 7e-60 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 4e-41 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 1e-20 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 9e-16 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 2e-12 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 2e-12 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 5e-10 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 6e-10 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 7e-09 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 2e-08 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 2e-08 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 8e-08 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 2e-07 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 4e-07 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 5e-06 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 3e-05 | |
| cd10227 | 312 | cd10227, ParM_like, Plasmid segregation protein Pa | 0.001 | |
| PRK13927 | 334 | PRK13927, PRK13927, rod shape-determining protein | 0.001 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 1273 bits (3296), Expect = 0.0
Identities = 604/676 (89%), Positives = 629/676 (93%), Gaps = 4/676 (0%)
Query: 38 FGQRVGGNRFGSVPSAAFLRLKSENRGRRYVGPVRVVNEKVVGIDLGTTNSAVAAMEGGK 97
FG R+ + + + RR GP+RVV EKVVGIDLGTTNSAVAAMEGGK
Sbjct: 1 FGGRLAPFSTPTAAFLKMGKRRGNGARRRAGGPLRVVAEKVVGIDLGTTNSAVAAMEGGK 60
Query: 98 PTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEE 157
PTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKM EVDEE
Sbjct: 61 PTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEE 120
Query: 158 SKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVP 217
SKQVSYRVVRDENGNVKL+CPAIGKQFAAEEISAQVLRKLVDDASKFLND VTKAV+TVP
Sbjct: 121 SKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVP 180
Query: 218 AYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSV 277
AYFNDSQRTATKDAGRIAGL+VLRIINEPTAASLAYGFEKK+NETILVFDLGGGTFDVSV
Sbjct: 181 AYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSV 240
Query: 278 LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEK 337
LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK+DEGIDLLKDKQALQRLTE AEK
Sbjct: 241 LEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEK 300
Query: 338 AKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAK 397
AK+ELSSLTQT+ISLPFITATADGPKHIDTTLTR KFEELCSDLLDR KTPVE +LRDAK
Sbjct: 301 AKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAK 360
Query: 398 LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSD 457
LSFKD+DEVILVGGSTRIPAVQELVKK+TG++PNVTVNPDEVVALGAAVQAGVLAG+VSD
Sbjct: 361 LSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSD 420
Query: 458 IVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFV 517
IVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFV
Sbjct: 421 IVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFV 480
Query: 518 RDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLP 577
RDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSA DKGTGKKQDITITGASTLP
Sbjct: 481 RDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGASTLP 540
Query: 578 NDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGK 637
DEV+RMVQEAE+FAKEDKEKRDA+DTKNQADSVVYQTEKQLKELGDKVPA+VK KVE K
Sbjct: 541 KDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAK 600
Query: 638 LKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSS 697
LKELKDAIA GSTQ MKD MAALNQEVMQ+GQSLYNQPGAG GAGP PG EAG+S SS
Sbjct: 601 LKELKDAIASGSTQKMKDAMAALNQEVMQIGQSLYNQPGAG---GAGPAPGGEAGSSSSS 657
Query: 698 NKGQ-DGDVIDADFTD 712
+ G DVIDADFTD
Sbjct: 658 SSGGDGDDVIDADFTD 673
|
Length = 673 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 1144 bits (2963), Expect = 0.0
Identities = 402/639 (62%), Positives = 502/639 (78%), Gaps = 16/639 (2%)
Query: 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVN 135
K++GIDLGTTNS VA MEGG+P ++ NAEG RTTPSVVA+TK+G+RLVGQ AKRQAV N
Sbjct: 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTN 61
Query: 136 PENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLR 195
PENT FS+KR +GR+ EV ++ K V Y++V+ +NG+ +E GK++ +EISA +L+
Sbjct: 62 PENTIFSIKRLMGRRDEEVQKDIKLVPYKIVKADNGDAWVE--IDGKKYTPQEISAMILQ 119
Query: 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF 255
KL DA +L + VT+AV+TVPAYFND+QR ATKDAG+IAGL+VLRIINEPTAA+LAYG
Sbjct: 120 KLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 179
Query: 256 EKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315
+KK +E ILV+DLGGGTFDVS+LE+GDGVFEVLST+GDTHLGGDDFD+RI+D+LA FK+
Sbjct: 180 DKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKK 239
Query: 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFE 375
+ GIDL KDK ALQRL E AEKAK+ELSS QT I+LPFITA A GPKH++ LTR KFE
Sbjct: 240 ENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFE 299
Query: 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVN 435
EL DL++R P + +L+DA LS D+DEVILVGGSTR+PAVQELVK+ G+EPN VN
Sbjct: 300 ELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVN 359
Query: 436 PDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVF 495
PDEVVA+GAA+Q GVLAGDV D++LLDVTPLSLG+ETLGGVMTK+I RNTT+PT KS+VF
Sbjct: 360 PDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVF 419
Query: 496 STAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555
STAAD Q +V I+VLQGERE DNKSLG F L GIPPAPRGVPQIEV FDIDANGI+ V
Sbjct: 420 STAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHV 479
Query: 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQT 615
SA DKGTGK+Q ITIT +S L ++E++RMV++AE A+EDK++++ ++ +NQADS++YQT
Sbjct: 480 SAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQT 539
Query: 616 EKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQP 675
EK LKELGDKVPA+ K K+E +KELK+A+ +A+K L Q +LG+++Y Q
Sbjct: 540 EKTLKELGDKVPADEKEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQKLGEAMYQQA 599
Query: 676 GAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDSK 714
A +D DV+DA+F + K
Sbjct: 600 QAAQGAAGA--------------AAKDDDVVDAEFEEVK 624
|
Length = 627 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 1070 bits (2770), Expect = 0.0
Identities = 455/636 (71%), Positives = 535/636 (84%), Gaps = 18/636 (2%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPS+VAYTK GD LVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINP 62
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
ENTF+SVKRFIGRK E+ EE+KQVSY+V D NGN+K+ECPA+ K F+ EEISAQVLRK
Sbjct: 63 ENTFYSVKRFIGRKFSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRK 122
Query: 197 LVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFE 256
LV+DASK+L ++VT+AV+TVPAYFNDSQR ATKDAG+IAGL+VLRIINEPTAASLAYG +
Sbjct: 123 LVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLD 182
Query: 257 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316
KKNNETILVFDLGGGTFDVS+LEVGDGVFEVLSTSGDTHLGGDDFDK+IV+WL FK+
Sbjct: 183 KKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKK 242
Query: 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEE 376
EGIDL KD+QALQRLTE AEKAK+ELS+LTQT I+LPFITAT GPKHI+ TLTR KFEE
Sbjct: 243 EGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEE 302
Query: 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNP 436
LCSDL++R + PVE +L+DAKL D+DEV+LVGGSTRIPA+QELVKK+ G++PN +VNP
Sbjct: 303 LCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNP 362
Query: 437 DEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFS 496
DEVVA+GAAVQAGVLAG+V DI+LLDVTPLSLG+ETLGGVMTKIIPRNTT+PT KSEVFS
Sbjct: 363 DEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFS 422
Query: 497 TAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVS 556
TA D QT+VEI+VLQGERE +DNKSLG+FRLDGIPPAPRGVPQIEV FDIDANGILSV+
Sbjct: 423 TAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVT 482
Query: 557 AVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTE 616
A DKGTGK+Q ITI GASTLP DEV+RMV+EAE+ A EDKEKR+ ID KNQA+S+ YQ E
Sbjct: 483 AKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAE 542
Query: 617 KQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQPG 676
KQLKEL DK+ E K K+E +K+L+ A+ + +++K + L + +M++G+ +Y+
Sbjct: 543 KQLKELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVYSST- 601
Query: 677 AGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTD 712
S + D DVID DF++
Sbjct: 602 -----------------STTDPASNDDDVIDTDFSE 620
|
Length = 621 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 986 bits (2550), Expect = 0.0
Identities = 398/597 (66%), Positives = 488/597 (81%), Gaps = 4/597 (0%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
K++GIDLGTTNS VA MEGG+P ++ NAEG RTTPSVVA+TKNG+RLVGQ AKRQAV NP
Sbjct: 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
ENT +S+KRF+GR+ EV EE+K+V Y+VV D G+V+++ GK++ +EISA +L+K
Sbjct: 61 ENTIYSIKRFMGRRFDEVTEEAKRVPYKVVGD-GGDVRVK--VDGKEYTPQEISAMILQK 117
Query: 197 LVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFE 256
L DA +L + VT+AV+TVPAYFND+QR ATKDAG+IAGL+VLRIINEPTAA+LAYG +
Sbjct: 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 177
Query: 257 K-KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315
K K +E ILVFDLGGGTFDVS+LE+GDGVFEVLST+GDTHLGGDDFD+RI+DWLA FK+
Sbjct: 178 KSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237
Query: 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFE 375
+EGIDL KDK ALQRL E AEKAK+ELSS+ T I+LPFITA A GPKH++ TLTR KFE
Sbjct: 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFE 297
Query: 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVN 435
EL +DL++R K PV +L+DA LS D+DEVILVGGSTRIPAVQELVK G+EPN +VN
Sbjct: 298 ELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVN 357
Query: 436 PDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVF 495
PDEVVA+GAA+Q GVL GDV D++LLDVTPLSLG+ETLGGVMTK+I RNTT+PT KS+VF
Sbjct: 358 PDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVF 417
Query: 496 STAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555
STAAD Q +V+I+VLQGER DNKSLG F L GIPPAPRGVPQIEV FDIDANGIL V
Sbjct: 418 STAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477
Query: 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQT 615
SA DKGTGK+Q ITIT +S L +E++RMV+EAE A+EDK++++ I+ +N ADS+ YQ
Sbjct: 478 SAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQA 537
Query: 616 EKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLY 672
EK LKE GDK+PAE K K+E + ELK+A+ + +K L Q + +L +++Y
Sbjct: 538 EKTLKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEEIKAKTEELQQALQKLAEAMY 594
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 947 bits (2451), Expect = 0.0
Identities = 383/600 (63%), Positives = 467/600 (77%), Gaps = 8/600 (1%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
V+GIDLGTTNS VA MEGG P ++ N EG RTTPSVVA+T +RLVGQ AKRQAV NP+
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPK-ERLVGQAAKRQAVTNPK 59
Query: 138 NTFFSVKRFIGRK--MVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLR 195
NT FSVKR IGRK V + K V Y+VV+ NG+ +E +G+ F E+ISA VL+
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQ 119
Query: 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF 255
KL + A +L + VT AV+TVPAYFND+QR ATKDAGRIAGL+VLRIINEPTAA+LAYG
Sbjct: 120 KLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 179
Query: 256 EKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314
+KK+ +LVFDLGGGTFDVS+LE+GDGVFEVL+T+GDTHLGG+DFD R+VD FK
Sbjct: 180 DKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFK 239
Query: 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKF 374
+ GIDL KD +ALQRL E AEKAK+ELSS QT I+LPFITA ADG K + TLTR KF
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSS-NQTEINLPFITAMADG-KDVSGTLTRAKF 297
Query: 375 EELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTV 434
EELC+DL +R PVE +L+DAKLS ++DEV+LVGGSTRIPAVQELVK+ G+EP+ V
Sbjct: 298 EELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGV 357
Query: 435 NPDEVVALGAAVQAGVLAG--DVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKS 492
NPDE VA+GAAVQAGVL+G DV D++LLDVTPLSLG+ETLGGVMTK+IPRNTT+PT KS
Sbjct: 358 NPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKS 417
Query: 493 EVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552
++FSTAAD QT+VEI V QGERE DNK LGSF LDGIPPAPRGVPQIEV FDIDANGI
Sbjct: 418 QIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGI 477
Query: 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVV 612
L+VSA DKGTGK+Q ITIT +S L +DE++RMV++AE +A EDK++++ I+ KN+A+ V
Sbjct: 478 LTVSAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYV 537
Query: 613 YQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLY 672
Y EK LKE GDK+P K KVE ++ LK+ + + ++ L + V +G+ +Y
Sbjct: 538 YSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGERMY 597
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 917 bits (2373), Expect = 0.0
Identities = 368/599 (61%), Positives = 482/599 (80%), Gaps = 11/599 (1%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
++VGIDLGTTNS VA MEGGKP ++ NAEG RTTPSVV +TK+G+ LVGQ+A+RQ V+NP
Sbjct: 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNP 62
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
+NTF+++KRFIGR+ E+D ESK+V Y + R+E GNV+++CP + ++FA EE+SA +LRK
Sbjct: 63 QNTFYNLKRFIGRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRK 122
Query: 197 LVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFE 256
L DDAS++L + VT AV+TVPAYFNDSQR AT+DAGRIAGL+V RI+NEPTAA+LAYG +
Sbjct: 123 LADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLD 182
Query: 257 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316
+ +++T+LVFDLGGGTFDVS+LEVG+GVFEV +TSGDT LGG+DFDKRIVDWLA F
Sbjct: 183 RSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEK 242
Query: 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEE 376
EGIDL +D+QALQRLTE AEKAK+ELS ++ T+ISLPFITAT DGPKHI+T L R +FE
Sbjct: 243 EGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFES 302
Query: 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNP 436
LC DLLDRL PV+ +L+DA LS +D+DEV+LVGGSTR+P VQ+LV+ + REPN VNP
Sbjct: 303 LCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNP 362
Query: 437 DEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFS 496
DEVVA+GAA+QAG+LAG++ D++LLDVTPLSLGLET+GGVM K+IPRNTT+P +S+VFS
Sbjct: 363 DEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFS 422
Query: 497 TAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVS 556
T+ + Q+SVEI+V QGERE DNKSLG F+L GIPPAPRGVPQ++V FDIDANGIL VS
Sbjct: 423 TSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVS 482
Query: 557 AVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTE 616
A D+ TG++Q +TI GASTL EV RM+QEAE A ED+ +R+ I+ +N+A +++ Q E
Sbjct: 483 ATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAE 542
Query: 617 KQLK----ELGDKVPAEVKGKVEGKLKELKDAIAEGSTQ-------AMKDTMAALNQEV 664
++L+ E G + VE +++++D++ + + +++ + LN+EV
Sbjct: 543 RRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREV 601
|
Length = 668 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 832 bits (2150), Expect = 0.0
Identities = 370/643 (57%), Positives = 480/643 (74%), Gaps = 12/643 (1%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
KV+GIDLGTTNS VA +EGGKP ++ N+EG RTTPS+V + K+GDRLVGQ+AKRQAV N
Sbjct: 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNA 62
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVV--RDENGNVKLECPAIGKQFAAEEISAQVL 194
ENT +S+KRFIGR+ + +EE +V Y V RD+ NV++ G+ + +EISA +L
Sbjct: 63 ENTVYSIKRFIGRRWDDTEEERSRVPYTCVKGRDDTVNVQIR----GRNYTPQEISAMIL 118
Query: 195 RKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
+KL DA +L + VT+AV+TVPAYF D+QR ATKDAG IAGL+VLRIINEPTAA+LAYG
Sbjct: 119 QKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYG 178
Query: 255 FEKKNNE-TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 313
+K++ E ILVFDLGGGTFDVS+L++GDGVFEV +T+G+ HLGGDDFD IVDWL NF
Sbjct: 179 LDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENF 238
Query: 314 KRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVK 373
++ EGIDL +DK ALQRL E AEKAK+ELSS+ T+I+LPFITA GPKH++ LTR K
Sbjct: 239 QQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAK 298
Query: 374 FEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM-TGREPNV 432
FEEL DL++ P++ +L+DA L +D+D VILVGGSTRIPAVQE ++K G++P+
Sbjct: 299 FEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDR 358
Query: 433 TVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKS 492
+VNPDE VALGAA+QAGVL G+V D++LLDVTPLSLG+ETLG V TKII RNTT+PTSKS
Sbjct: 359 SVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKS 418
Query: 493 EVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552
+VFSTA DGQTSVEI+VLQGER +DNKSLG F L GIPPAPRGVPQIEV F+ID NGI
Sbjct: 419 QVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGI 478
Query: 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVV 612
L VSA D+GTG++Q I IT L ++E++RM QEAE++A+ED+ ++ I+ KNQADS++
Sbjct: 479 LKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLL 538
Query: 613 YQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEG--STQAMKDTMAALNQEVMQLGQS 670
Y E LKE G+ + E+K + E K+++L+ A+ + S + +K + Q ++ +G
Sbjct: 539 YSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAE 598
Query: 671 LYNQPGAGAAPGAGPTPGAEAGASDSSNKGQDGDVIDADFTDS 713
+Y Q G+ PT A+ +S + +ID D
Sbjct: 599 VYQQGGSQTTDTVEPTSDTLITATMNS--SNETTLIDEFNFDF 639
|
Length = 653 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 757 bits (1955), Expect = 0.0
Identities = 343/645 (53%), Positives = 462/645 (71%), Gaps = 9/645 (1%)
Query: 55 FLRLKSENRGRRYVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 114
+R + R +VGIDLGTTNS VA MEG +P ++ N+EG RTTPSVV
Sbjct: 25 AMRSLCTSAIRF-----AKATGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVV 79
Query: 115 AYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE--VDEESKQVSYRVVRDENGN 172
A+T++G RLVG +AKRQAV NPENT F+ KR IGR+ E +E K + Y++VR NG+
Sbjct: 80 AFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGD 139
Query: 173 VKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232
+E A GK+++ +I A VL K+ + A +L V +AV+TVPAYFNDSQR ATKDAG
Sbjct: 140 AWIE--AQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197
Query: 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSG 292
+IAGLDVLRIINEPTAA+LA+G +K + +TI V+DLGGGTFD+S+LE+ GVFEV +T+G
Sbjct: 198 KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNG 257
Query: 293 DTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISL 352
+T LGG+DFD+RI+++L + FK+ +GIDL KDK ALQRL E AE AK+ELSS TQT I+L
Sbjct: 258 NTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINL 317
Query: 353 PFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGS 412
PFITA GPKH+ L+R K EEL DLL + P E ++DA + +L++VILVGG
Sbjct: 318 PFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGM 377
Query: 413 TRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLET 472
TR+P V E VKK+ G+EP+ VNPDE VA+GAA+QAGVL G++ D++LLDVTPLSLG+ET
Sbjct: 378 TRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIET 437
Query: 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIP 532
LGGV T++I RNTT+PT KS+VFSTAAD QT V I V QGERE DNK LG F L GIP
Sbjct: 438 LGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIP 497
Query: 533 PAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFA 592
PAPRGVPQIEV FD+DANGI+++SAVDK TGKKQ+ITI + L ++E+++MV+EAE +
Sbjct: 498 PAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYK 557
Query: 593 KEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQA 652
++D++K++ +D KN+A++++Y EKQL +L DK+ K +++ K+ +L+ ++ +
Sbjct: 558 EQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSEDVDS 617
Query: 653 MKDTMAALNQEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSS 697
+KD L + ++ Q Y Q + T E+ + +
Sbjct: 618 IKDKTKQLQEASWKISQQAYKQGNSDNQQSEQSTNSEESEEKNDN 662
|
Length = 663 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 735 bits (1900), Expect = 0.0
Identities = 351/599 (58%), Positives = 435/599 (72%), Gaps = 26/599 (4%)
Query: 77 KVVGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVN 135
K +GIDLGTTNS VA M GG P ++ NAEG+R TPSVVA++KNG+ LVGQ AKRQAV N
Sbjct: 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDN 65
Query: 136 PENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLR 195
PENT FS+KR IGR + V GK++ EEISA +L
Sbjct: 66 PENTIFSIKRKIGRGS------NGLKISVEVD-------------GKKYTPEEISAMILT 106
Query: 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF 255
KL +DA +L + VT AV+TVPAYFND+QR ATKDA RIAGL+VLR+INEPTAA+LAYG
Sbjct: 107 KLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGL 166
Query: 256 EKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315
+K +T+LV+DLGGGTFDVS+LE+GDGVFEVL+T GD HLGGDDFD ++D+L FK
Sbjct: 167 DKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKG 226
Query: 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFE 375
GIDL DK ALQRL E AEKAK+ELSS TQT+I+LP I + LTR KFE
Sbjct: 227 KGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFE 282
Query: 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVN 435
EL DLL+R PVE +L+DA L D+D VILVGGSTRIPAVQELVK+ G+EP ++N
Sbjct: 283 ELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSIN 342
Query: 436 PDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVF 495
PDE VALGAA+QA VL+G+V D++LLDV PLSLG+ETLGGV T II RNTT+P KS+ F
Sbjct: 343 PDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEF 402
Query: 496 STAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555
STAADGQT+V I+V QGERE DNKSLG F LDGIPPAPRGVPQIEV FDIDANGIL+V
Sbjct: 403 STAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNV 462
Query: 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQT 615
+A D GTGK+Q ITI +S L ++E++RMV++AE A DK+ R+ ++ +N+A+S++Y
Sbjct: 463 TAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSL 522
Query: 616 EKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 674
EK LKE+ KV E K K+E + +L++A+ EG + +K + L + +L + Y Q
Sbjct: 523 EKALKEIV-KVSEEEKEKIEEAITDLEEAL-EGEKEEIKAKIEELQEVTQKLAEKKYQQ 579
|
Length = 579 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 698 bits (1804), Expect = 0.0
Identities = 267/376 (71%), Positives = 319/376 (84%), Gaps = 1/376 (0%)
Query: 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVN 135
K++GIDLGTTNS VA MEGG+PT++ NAEG RTTPSVVA+TK G+RLVGQ AKRQAV N
Sbjct: 2 GKIIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTN 61
Query: 136 PENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLR 195
PENT FS+KRF+GRK EV+EE K V Y+VV DE GN K+E + GK + +EISA +L+
Sbjct: 62 PENTIFSIKRFMGRKFDEVEEERK-VPYKVVVDEGGNYKVEIDSNGKDYTPQEISAMILQ 120
Query: 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF 255
KL +DA +L + VT+AV+TVPAYFNDSQR ATKDAG+IAGL+VLRIINEPTAA+LAYG
Sbjct: 121 KLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 180
Query: 256 EKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315
+KK NE ILV+DLGGGTFDVS+LE+GDGVFEVL+T+GDTHLGGDDFD+RI+DWL FK+
Sbjct: 181 DKKGNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEEFKK 240
Query: 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFE 375
+EGIDL KDK ALQRL E AEKAK+ELSS+T+T I+LPFITA A GPKH++ TLTR KFE
Sbjct: 241 EEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFE 300
Query: 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVN 435
EL DL++R PV+ +L+DAKLS D+DEVILVGGSTRIPAVQELVK++ G+EPN VN
Sbjct: 301 ELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVN 360
Query: 436 PDEVVALGAAVQAGVL 451
PDEVVA+GAA+Q GVL
Sbjct: 361 PDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 604 bits (1560), Expect = 0.0
Identities = 310/645 (48%), Positives = 404/645 (62%), Gaps = 32/645 (4%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 138
+GIDLGTT S V + I+ N +G RTTPS VA+T + +RL+G AK Q NPEN
Sbjct: 7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVARNPEN 65
Query: 139 TFFSVKRFIGRKMVE--VDEESKQVSYRVVRDENGNVKLECPAIG--KQFAAEEISAQVL 194
T F KR IGRK + V + K ++V + +E G K F EEIS+ VL
Sbjct: 66 TVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVL 125
Query: 195 RKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
+K+ + A +L V AVVTVPAYFNDSQR ATKDAG IAGL+VLRIINEPTAA++AYG
Sbjct: 126 QKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 185
Query: 255 FEKKNNE--TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312
+KK + +L+FDLGGGTFDVS+L + DG+FEV +T+GDTHLGG+DFD R+V++ +
Sbjct: 186 LDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQD 245
Query: 313 FKR-DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTR 371
FKR + G DL +++AL+RL E+AK LSS TQ I + + D + T++R
Sbjct: 246 FKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDY----NVTISR 301
Query: 372 VKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM-TGREP 430
+FEELC D PVE L+DA + + + EV+LVGGSTRIP VQ L+K G+EP
Sbjct: 302 ARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEP 361
Query: 431 NVTVNPDEVVALGAAVQAGVLAGD----VSDIVLLDVTPLSLGLETLGGVMTKIIPRNTT 486
++NPDE VA GAAVQA +L G+ V D++LLDVTPLSLGLET GGVMTK+I RNTT
Sbjct: 362 CKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTT 421
Query: 487 LPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFD 546
+PT KS++F+T AD Q V I V +GER +DN LG F LDGIPPAPRGVPQIEV FD
Sbjct: 422 IPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFD 481
Query: 547 IDANGILSVSAVDKGTGKKQDITITG-ASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTK 605
IDANGIL+VSA DK TGK ITIT L ++ RMV EAE++ ED+ R+ ++ K
Sbjct: 482 IDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAK 541
Query: 606 NQADSVVYQTEKQLKE--LGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQE 663
N ++ Y + L++ + K+ K +E + E + + E + A K+ +E
Sbjct: 542 NGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWL-EKNQLAEKEEFEHKQKE 600
Query: 664 V--------MQLGQSL-YNQPGA--GAAPGAGPTPGAEAGASDSS 697
V ++ Q+ PG G PG P AGA SS
Sbjct: 601 VESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAGPAGAGASS 645
|
Length = 653 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 601 bits (1551), Expect = 0.0
Identities = 325/673 (48%), Positives = 449/673 (66%), Gaps = 27/673 (4%)
Query: 38 FGQRVGGNRFGSVPSAAFLRLKSENRGRRYVGPVRVVNEKVVGIDLGTTNSAVAAMEGGK 97
F +RV G+ + +A R +S+ V V+G+DLGTT S VA M+G K
Sbjct: 2 FARRVCGS--AAASAARLARHESQK-----------VQGDVIGVDLGTTYSCVATMDGDK 48
Query: 98 PTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE--VD 155
++ N+EG RTTPSVVA+ K ++LVG AKRQA+ NP++TF++VKR IGR+ + +
Sbjct: 49 ARVLENSEGFRTTPSVVAF-KGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQ 107
Query: 156 EESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVT 215
++ K V Y++VR NG+ ++ GKQ++ +I A VL K+ + A FL V+ AVVT
Sbjct: 108 KDIKNVPYKIVRAGNGDAWVQ-DGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVT 166
Query: 216 VPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDV 275
PAYFND+QR ATKDAG IAGL+V+R++NEPTAA+LAYG +K + I V+DLGGGTFD+
Sbjct: 167 CPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDI 226
Query: 276 SVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETA 335
SVLE+ GVFEV +T+GDTHLGG+DFD + D++ F++ GIDL K++ ALQR+ E A
Sbjct: 227 SVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAA 286
Query: 336 EKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRD 395
EKAK ELSS +T ++LPFITA ADG +HI ++R KFE + L++R P + ++D
Sbjct: 287 EKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKD 346
Query: 396 AKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDV 455
A + K++++V+LVGG TR+P V E VKK ++P VNPDE VALGAA GVL GDV
Sbjct: 347 AGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDV 406
Query: 456 SDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGERE 515
+VLLDVTPLSLG+ETLGGV T++IP+NTT+PT KS+ FSTAAD QT V I V QGERE
Sbjct: 407 KGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGERE 466
Query: 516 FVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGAST 575
DN+ +G F L GIPPAPRGVPQIEV FDIDANGI V+A DK TGK Q+ITIT
Sbjct: 467 MAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITANGG 526
Query: 576 LPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVE 635
L +++++M++++E+ A+ D+ KR+ ++ +N A++ + E+QL E AE K V+
Sbjct: 527 LSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEWKYVSDAE-KENVK 585
Query: 636 GKLKELKDAIAEGSTQAMKDTMAA----LNQEVMQLGQSLYNQPGAGAAPGAGPTPGAEA 691
+ EL+ A+ + KD +AA L + VM+ G++ Y Q AA +G + +
Sbjct: 586 TLVAELRKAME--NPNVAKDDLAAATDKLQKAVMECGRTEYQQ---AAAANSGSSSNSGE 640
Query: 692 GASDSSNKGQDGD 704
+ Q
Sbjct: 641 QQQQQQQQQQQNS 653
|
Length = 657 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 585 bits (1511), Expect = 0.0
Identities = 241/586 (41%), Positives = 364/586 (62%), Gaps = 19/586 (3%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 138
VGIDLGTTNS VA + G+ ++ + +G+ PSVV Y ++G VG A+ A +P+N
Sbjct: 22 VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKN 80
Query: 139 TFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLV 198
T SVKRF+GR + ++ + + Y+ V ENG + K + E+SA++L+ L
Sbjct: 81 TISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLK--SPVEVSAEILKALR 138
Query: 199 DDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKK 258
A + L + AV+TVPAYF+D+QR ATKDA R+AGL+VLR++NEPTAA++AYG +
Sbjct: 139 QRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG 198
Query: 259 NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEG 318
I V+DLGGGTFD+S+L + GVFEVL+T GD+ LGGDDFD + DW+ G
Sbjct: 199 QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWI----LEQAG 254
Query: 319 IDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELC 378
+ D + + L + A AK LS +S+ A G +TR +F L
Sbjct: 255 LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSV----ALWQG------EITREQFNALI 304
Query: 379 SDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDE 438
+ L+ R +LRDA + ++ EV++VGGSTR+P V+E V + GR P +++PD+
Sbjct: 305 APLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDK 364
Query: 439 VVALGAAVQAGVLAGDV--SDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFS 496
VVA+GAA+QA +LAG+ SD++LLDV PLSLGLET+GG++ KIIPRNTT+P ++++ F+
Sbjct: 365 VVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFT 424
Query: 497 TAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVS 556
T DGQT++ I+V+QGERE V D +SL F L GIPP G +I V F +DA+G+LSV+
Sbjct: 425 TFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVT 484
Query: 557 AVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTE 616
A++K TG + I + + L +DE+ RM++++ A+ED + R + K +A+ V+ +
Sbjct: 485 AMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQ 544
Query: 617 KQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQ 662
L GD + A + ++ + L++ A++ + AL++
Sbjct: 545 AALAADGDLLSAAERAAIDAAMAALREVAQGDDADAIEAAIKALDK 590
|
Length = 616 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 569 bits (1469), Expect = 0.0
Identities = 244/585 (41%), Positives = 368/585 (62%), Gaps = 15/585 (2%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
VGIDLGTTNS VA++ G P ++ +AEG+ PSVV Y K+G VG+ A A +P+
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60
Query: 138 NTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKL 197
NT SVKR +GR + ++ + + YR V V+L + E+SA++L+KL
Sbjct: 61 NTISSVKRLMGRSIEDI-KTFSILPYRFVDGPGEMVRLR--TVQGTVTPVEVSAEILKKL 117
Query: 198 VDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEK 257
A + L + AV+TVPAYF+D+QR ATKDA R+AGL+VLR++NEPTAA++AYG +K
Sbjct: 118 KQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK 177
Query: 258 KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDE 317
+ V+DLGGGTFDVS+L++ GVFEVL+T GD+ LGGDDFD + W +
Sbjct: 178 ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW----ILKQL 233
Query: 318 GIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEEL 377
GI + + + L + A AK L+ + T DG K LTR +FE L
Sbjct: 234 GISADLNPEDQRLLLQAARAAKEALTDAESVEV-----DFTLDG-KDFKGKLTRDEFEAL 287
Query: 378 CSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPD 437
L+ + + +LRDA LS +++ V+LVGGSTR+P V+ V ++ G+EP ++PD
Sbjct: 288 IQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPD 347
Query: 438 EVVALGAAVQAGVLAGDV--SDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVF 495
+VVALGAA+QA +LAG+ +D++LLDVTPLSLG+ET+GG++ KIIPRNT +P ++++ F
Sbjct: 348 QVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEF 407
Query: 496 STAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555
+T DGQT++ I+V+QGERE V D +SL F L GIPP G +I V F +DA+G+L+V
Sbjct: 408 TTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467
Query: 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQT 615
SA ++ TG +Q I + + L ++E++RM++++ + A+ED R + K +A+ ++
Sbjct: 468 SAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEAL 527
Query: 616 EKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAAL 660
+ L GD + + + ++ ++ L+ A+ A+K + AL
Sbjct: 528 QAALAADGDLLSEDERAAIDAAMEALQKALQGDDADAIKAAIEAL 572
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 542 bits (1398), Expect = 0.0
Identities = 224/377 (59%), Positives = 286/377 (75%), Gaps = 4/377 (1%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
V+GIDLGTTNS VA MEG P ++ NAEG RTTPSVVA+TK+G+RLVG AKRQAV NP
Sbjct: 3 AVIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNP 62
Query: 137 ENTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVL 194
ENT ++ KR IGR+ EV ++ K V Y++V+ NG+ +E A GK+++ +I A VL
Sbjct: 63 ENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVE--AHGKKYSPSQIGAFVL 120
Query: 195 RKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
K+ + A +L V AV+TVPAYFNDSQR ATKDAG+IAGL+VLR+INEPTAA+LAYG
Sbjct: 121 MKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYG 180
Query: 255 FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314
+KK+++ I V+DLGGGTFD+S+LE+ GVFEV ST+GDT LGG+DFD ++ L FK
Sbjct: 181 LDKKDDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKEFK 240
Query: 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKF 374
+++GIDL KD ALQRL E AEKAK+ELSS QT+I+LP+ITA A GPKH++ LTR KF
Sbjct: 241 KEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTRAKF 300
Query: 375 EELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTV 434
E L DL+ R P + +L+DA +S D+ EVILVGG TR+P VQE VK++ G+EP+ V
Sbjct: 301 ESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEPSKGV 360
Query: 435 NPDEVVALGAAVQAGVL 451
NPDE VA+GAA+Q GVL
Sbjct: 361 NPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 471 bits (1214), Expect = e-162
Identities = 203/376 (53%), Positives = 266/376 (70%), Gaps = 12/376 (3%)
Query: 79 VGIDLGTTNSAVAAM-EGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
+GIDLGTTNSAVA + GGKP I+ N EG RTTPSVV + +G+ LVG+ AKRQA+ NPE
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 138 NTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAI--GKQFAAEEISAQVLR 195
NT KR IGRK D+ Q + +V+ + G + P GK+++ EE+SA +L+
Sbjct: 61 NTVGDFKRLIGRK---FDDPLVQSAKKVIGVDRGAPIIPVPVELGGKKYSPEEVSALILK 117
Query: 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF 255
KL +DA +L + VT+AV+TVPAYFND+QR ATK+A IAGL+V+R+INEPTAA+LAYG
Sbjct: 118 KLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGL 177
Query: 256 EKKN--NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 313
+KK+ TILVFDLGGGTFDVS++EV GVFEVL+T GD HLGGDDFD + D+LA F
Sbjct: 178 DKKDEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKF 237
Query: 314 KRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVK 373
K GIDL D +AL+RL E AEKAK+ LSS + I+LP + ++ LTR +
Sbjct: 238 KEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGL----GSGGDLEVELTREE 293
Query: 374 FEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVT 433
FEEL LL+R VE L DA L +D+D V+LVGGS+RIP V+EL++++ G++P +
Sbjct: 294 FEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRS 353
Query: 434 VNPDEVVALGAAVQAG 449
++PDE VALGAA+ A
Sbjct: 354 IDPDEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 448 bits (1154), Expect = e-153
Identities = 206/377 (54%), Positives = 261/377 (69%), Gaps = 10/377 (2%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
V+GIDLGTT S V + G+ I+ N +G R TPS VA+T +G+RL+G AK QA NPE
Sbjct: 3 VIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFT-DGERLIGDAAKNQATSNPE 61
Query: 138 NTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENG-NVKLECPAIGKQFAAEEISAQVL 194
NT F VKR IGRK EV ++ K + Y+VV + ++++ K F+ EEISA VL
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEISAMVL 121
Query: 195 RKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
K+ + A +L V AVVTVPAYFND+QR ATKDAG IAGL+V+RIINEPTAA++AYG
Sbjct: 122 TKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYG 181
Query: 255 FEKKNNET-ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 313
+KK E ILVFDLGGGTFDVS+L + +GVFEVL+T+GDTHLGG+DFD+R+++ F
Sbjct: 182 LDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHFIKLF 241
Query: 314 KRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVK 373
K+ G D+ KDK+ALQ+L EKAK LSS QT I I + DG + TLTR K
Sbjct: 242 KKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIE---IESLFDG-EDFSETLTRAK 297
Query: 374 FEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKK-MTGREPNV 432
FEEL DL + PV+ L DA L D+DE++LVGGSTRIP VQ+L+K+ G+EP+
Sbjct: 298 FEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSR 357
Query: 433 TVNPDEVVALGAAVQAG 449
+NPDE VA GAAVQAG
Sbjct: 358 GINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 438 bits (1129), Expect = e-149
Identities = 202/379 (53%), Positives = 274/379 (72%), Gaps = 10/379 (2%)
Query: 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVN 135
++GIDLGTTNS VA ++ P I+ NAEG+RTTPS+V++TK G LVG+ AKRQ ++
Sbjct: 2 STIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTGI-LVGEAAKRQEALH 60
Query: 136 PENTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQV 193
PENTFF+ KR IGR+ VEV + K Y++V NG+ + GK+++ +I++ V
Sbjct: 61 PENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTN--GKKYSPSQIASFV 118
Query: 194 LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAY 253
L+KL A +L V +AV+TVPAYFNDSQR ATKDAG +AGL VLRIINEPTAA+LAY
Sbjct: 119 LKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAY 178
Query: 254 GFEK-KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312
G +K K N+ I V+DLGGGTFD+S+L + DGVFEV +T+GDT LGG+DFD IV ++
Sbjct: 179 GIDKRKENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKE 238
Query: 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRV 372
FKR IDL ++K+A+QR+ E AEKAK+ELSS ++ I LP++ DGPKH+ T+TR
Sbjct: 239 FKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYL----DGPKHLRITITRR 294
Query: 373 KFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNV 432
+FE+L + R P + L+DA L KD+DEVILVGG TR+P +Q +V+++ G++P+
Sbjct: 295 EFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSK 354
Query: 433 TVNPDEVVALGAAVQAGVL 451
+VNPDE VALGAA+Q +L
Sbjct: 355 SVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 425 bits (1096), Expect = e-144
Identities = 197/383 (51%), Positives = 255/383 (66%), Gaps = 17/383 (4%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 138
+GIDLGTT S V + GK I+ N +G RTTPS VA+T + +RL+G AK Q +NP N
Sbjct: 2 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTN 60
Query: 139 TFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIG--KQFAAEEISAQVL 194
T F KR IGRK V + K ++VV + G + G K F EEIS+ VL
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVV-NGGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 195 RKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
K+ + A +L +VT AV+TVPAYFNDSQR ATKDAG IAGL+VLRIINEPTAA++AYG
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 255 FEKKNN--ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312
+KK +L+FDLGGGTFDVS+L + DG+FEV +T+GDTHLGG+DFD R+V+
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHID--TTLT 370
FKR D+ +K+AL+RL E+AK LSS TQ +I I + +G ID T++T
Sbjct: 240 FKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG---IDFYTSIT 293
Query: 371 RVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKK-MTGRE 429
R +FEELC+DL PVE LRDAKL + +++LVGGSTRIP VQ+L++ G+E
Sbjct: 294 RARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 353
Query: 430 PNVTVNPDEVVALGAAVQAGVLA 452
N ++NPDE VA GAAVQA +L+
Sbjct: 354 LNKSINPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 401 bits (1032), Expect = e-135
Identities = 175/373 (46%), Positives = 241/373 (64%), Gaps = 36/373 (9%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 138
+GIDLGTTNS VA + GK ++ NA G+ TPSVV+ ++G+ LVG+ A+ + + +P+
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 139 TFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQ-FAAEEISAQVLRKL 197
T S KRF+G + + R +GK+ F AEE+S+ VLR L
Sbjct: 61 TAASFKRFMG-------------TDKKYR------------LGKREFRAEELSSLVLRSL 95
Query: 198 VDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF-E 256
+DA +L + VT+AV++VPAYFND QR ATK AG +AGL V R+INEPTAA+LAYG +
Sbjct: 96 KEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHD 155
Query: 257 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316
K LVFDLGGGTFDVSVLE+ DGV EV +++GD +LGG+DF + + + D
Sbjct: 156 KDEETKFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLKKHGLD 215
Query: 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEE 376
D L RL AE+AK LS + +S+ +G + ++ TLTR +FEE
Sbjct: 216 FEK---LDPSELARLLRAAERAKRALSDQEEAEMSV-----RIEG-EELEYTLTREEFEE 266
Query: 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNP 436
+C LL+RL+ P+E +LRDA+L D+DE+ILVGG+TR+P V++LV ++ GR P V +NP
Sbjct: 267 ICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNP 326
Query: 437 DEVVALGAAVQAG 449
DEVVALGAA+QAG
Sbjct: 327 DEVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 375 bits (965), Expect = e-125
Identities = 163/371 (43%), Positives = 226/371 (60%), Gaps = 18/371 (4%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
+GIDLGTTNS VA++ GK I+ + G+ PSVV Y +G VG A + A+ +P+
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHY-GDGGISVGHDALKLAISDPK 60
Query: 138 NTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKL 197
NT SVKR +G+ + ++ + + +NG + L G E+SA++L+ L
Sbjct: 61 NTISSVKRLMGKSIEDIKKSFPYLPILE--GKNGGIILFHTQQGT-VTPVEVSAEILKAL 117
Query: 198 VDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEK 257
+ A K L + AV+TVPAYF+D+QR ATKDA R+AGL+VLR++NEPTAA+LAYG +K
Sbjct: 118 KERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDK 177
Query: 258 KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDE 317
K V+DLGGGTFDVS+L++ GVFEVL+T GD+ LGGDDFD+ + + L +
Sbjct: 178 KKEGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELL----LKKY 233
Query: 318 GIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEEL 377
G+ L + L A KAK LS + + + T+TR +FE+L
Sbjct: 234 GLKSLISDEDQAELLLIARKAKEALSGAEEVEVRG----------QDFKCTITREEFEKL 283
Query: 378 CSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPD 437
L+ + + +LRDA LS KD+ VILVGGSTRIP VQE V K G++P +NPD
Sbjct: 284 IDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPD 343
Query: 438 EVVALGAAVQA 448
EVVA+GAA+QA
Sbjct: 344 EVVAIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 361 bits (928), Expect = e-116
Identities = 197/602 (32%), Positives = 310/602 (51%), Gaps = 45/602 (7%)
Query: 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVN 135
+ VGID GTTNS +A K ++ + + + P+ + +T N +
Sbjct: 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNN-----------FTIG 67
Query: 136 PENTFFSVKRFIGRKMVEVDEESKQVS-YRVVRDENGNVKLECPAIGKQFAAEEISAQVL 194
S+KR G+ + E+ S + D N + +L+ KQ EI+A++
Sbjct: 68 NNKGLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSS-ELKLNFANKQLRIPEIAAEIF 126
Query: 195 RKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
L + A + L ++TKAV+TVPA+FND+ R A +IAG +VLR+I EPTAA+ AYG
Sbjct: 127 IYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYG 186
Query: 255 FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314
K LV+DLGGGTFDVS+L + +G+F+V++T+GD LGG+D D I +L + F
Sbjct: 187 LNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF- 245
Query: 315 RDEGIDLLKDKQALQRLTETAEKAKMELS---SLTQTNISLPFITATADGPKHIDTTLTR 371
DL LQ A+KAK L+ S NIS+ +
Sbjct: 246 -----DLPNSIDTLQ----LAKKAKETLTYKDSFNNDNISI-----------------NK 279
Query: 372 VKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN 431
E+L L++R + L A ++D VILVGG+TRIP +++ + K +
Sbjct: 280 QTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDIL 337
Query: 432 VTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSK 491
++PD+ V GAA+QA L ++ +L+DV PLSLG+E GG++ KII RNT +P S
Sbjct: 338 SDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISV 397
Query: 492 SEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANG 551
+ F+T AD QT ++ ++LQGERE D +SL F L G+PP G + EV F IDA+G
Sbjct: 398 VKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADG 457
Query: 552 ILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSV 611
ILSVSA +K + I + + E+ M++ A + AK D R + +A+++
Sbjct: 458 ILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEAL 517
Query: 612 VYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSL 671
++ E+ + EL + + L +K+A+ + +++ ++ + +
Sbjct: 518 IFNIERAIAELTTLLSESEISIINSLLDNIKEAVHARDIILINNSIKEFKSKIKKSMDTK 577
Query: 672 YN 673
N
Sbjct: 578 LN 579
|
Length = 595 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 321 bits (826), Expect = e-103
Identities = 155/384 (40%), Positives = 227/384 (59%), Gaps = 15/384 (3%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
VVGID G NS VA G +V N R TPS+V++ + RL+G+ AK QA+ N +
Sbjct: 2 VVGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEK-QRLIGEAAKNQAISNFK 60
Query: 138 NTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIGKQ--FAAEEISAQV 193
NT + KR IGRK EV +E K + ++VV +G V ++ +G++ F+ E++ A +
Sbjct: 61 NTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAML 120
Query: 194 LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAY 253
L KL + A K L VT V++VP+YF D+QR A DA +IAGL+ LR++NE TA +LAY
Sbjct: 121 LTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAY 180
Query: 254 GFEKKN-----NETILVF-DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 307
G K + + F D+G + VS++ G +VLST+ D +LGG DFD+ + +
Sbjct: 181 GIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRDFDEALFE 240
Query: 308 WLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDT 367
A FK ID+L + +A RL EK K LS+ N P K +
Sbjct: 241 HFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSA----NTEAPLNIECLMEDKDVSG 296
Query: 368 TLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTG 427
+ R +FEELC+ LL+R++ P+E +L +A L+ +D+ V +VGGSTRIPAV+EL+ K+ G
Sbjct: 297 KIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVFG 356
Query: 428 REPNVTVNPDEVVALGAAVQAGVL 451
+E + T+N DE VA G A+Q +L
Sbjct: 357 KELSTTLNADEAVARGCALQCAML 380
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 8e-96
Identities = 149/385 (38%), Positives = 228/385 (59%), Gaps = 10/385 (2%)
Query: 77 KVVGIDLGTTNSAVAAMEG--GKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVV 134
K++GIDLGTT S+V + G+ I+ + G+++ PSVVA+T G LVG A QA
Sbjct: 21 KIIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFT-PGTVLVGYKAVEQAEH 79
Query: 135 NPENTFFSVKRFIGRKMV--EVDEESKQVSYRVVRDENGNVKLECPAIGKQFAA--EEIS 190
NP+NT + KRFIG+ E++ ES + ++V + + EEI
Sbjct: 80 NPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIG 139
Query: 191 AQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAAS 250
++++ KL A K+L V KAV++VPA F++ QR AT A +AGL+VLR+INEPTAA+
Sbjct: 140 SRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAA 199
Query: 251 LAYGFEKKNN-ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL 309
LAYG KK + +LV DLGGGT DVS+L G+F + +G+ LGG DF++R++ +L
Sbjct: 200 LAYGLHKKQDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYL 259
Query: 310 ASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPK-HIDTT 368
G + +K+ +QRL + E AK+ L+ T ISL + +
Sbjct: 260 YQKIYEKYGK-VPDNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYE 318
Query: 369 LTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR 428
LTR +FE L DL ++ P+E L + L +++DE++LVGGSTRIP +++++ + G+
Sbjct: 319 LTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFGK 378
Query: 429 EPNVTVNPDEVVALGAAVQAGVLAG 453
+PN +V+P+ V G A+QAG++ G
Sbjct: 379 DPNTSVDPELAVVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 274 bits (702), Expect = 1e-85
Identities = 134/381 (35%), Positives = 220/381 (57%), Gaps = 18/381 (4%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 138
+G+ G T++ +A + G+ +V N G R TP+VVA+T +VG AK+ + N N
Sbjct: 3 IGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTE-VIVGLAAKQGRIRNAAN 61
Query: 139 TFFSVKRFIGRKMVE--VDEESKQVSYRVVRDENGNVKLECPAIGKQ--FAAEEISAQVL 194
T K+ +GR + +E + S +++ +++G K E K + +E++ +
Sbjct: 62 TIVKNKQILGRSYSDPFKQKEKTESSCKII-EKDGEPKYEIFTEEKTKHVSPKEVAKLIF 120
Query: 195 RKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
+K+ + A L V+TVP YF++ Q+ A ++A AG +VLRII+EP+AA+LAYG
Sbjct: 121 KKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYG 180
Query: 255 F---EKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 311
+LV+ LGG + DV++L V G++ VL+TS D +LGG+ F + + +LA+
Sbjct: 181 IGQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLSQYLAN 240
Query: 312 NFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHID--TTL 369
FKR D+ + +A+ +L AE AK LS+L N F+ + +G ID ++
Sbjct: 241 EFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANC---FVESLYEG---IDFQCSV 294
Query: 370 TRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM-TGR 428
+R +FE LCS L + P+E L A L+ D+++V+L GGS+RIP +Q+L+K +
Sbjct: 295 SRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSV 354
Query: 429 EPNVTVNPDEVVALGAAVQAG 449
E +++PDEV+A+GAA QAG
Sbjct: 355 EVLNSISPDEVIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 2e-79
Identities = 137/395 (34%), Positives = 209/395 (52%), Gaps = 33/395 (8%)
Query: 79 VGIDLGTTNSAVAAMEGGKP-TIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
+GIDLG+ VA ++ G P IV N E +R TPS VA+ K G+RL G A A P+
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAF-KGGERLFGSDASSLAARFPQ 59
Query: 138 NTFFSVKRFIGRKMV--EVDEESKQ--VSYRVVRDENGNVKLECPAIGKQFAAEEISAQV 193
+ +K +G+ V + + Y VV + G V + G++++ EE+ A +
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISD-GEEYSVEELVAMI 118
Query: 194 LRKLVDDASKFLND-SVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLA 252
L A + + V V+TVP YF +QR A DA +AGL+VL ++N+ TAA+L
Sbjct: 119 LNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALN 178
Query: 253 YG----FEKKNNETILVFDLGGGTFDVSVLEV----------GDGVFEVLSTSGDTHLGG 298
Y FE + +L +D+G G+ +V+E EVL D LGG
Sbjct: 179 YALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGG 238
Query: 299 DDFDKRIVDWLASNF--KRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFIT 356
+FD R+ D LA F K +D+ + +A+ +L + A +AK LS+ ++ +S I
Sbjct: 239 REFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVS---IE 295
Query: 357 ATADGPKHID--TTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTR 414
+ D ID T +TR +FEELC+DL +R P++ +L A L+ KD+D V L+GG+TR
Sbjct: 296 SLYDD---IDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATR 352
Query: 415 IPAVQELVKKMTGREP-NVTVNPDEVVALGAAVQA 448
+P VQE + + G++ +N DE A+GAA A
Sbjct: 353 VPKVQEELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 244 bits (625), Expect = 2e-74
Identities = 140/387 (36%), Positives = 219/387 (56%), Gaps = 17/387 (4%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAY-TKNGDRLVGQIAKRQAVVNP 136
VVG D+G + +A G V N R TPSV+++ +KN R +G AK Q + +
Sbjct: 2 VVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKN--RTIGVAAKNQQITHA 59
Query: 137 ENTFFSVKRFIGRKMVE--VDEESKQVSYRVVRDENGNVKLECPAIGKQ--FAAEEISAQ 192
NT + KRF GR + V +E + +SY +V +NG V ++ +G++ F+ E+I+A
Sbjct: 60 NNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAM 119
Query: 193 VLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLA 252
+L KL + A L VT V++VP++F D++R + DA +I GL+ LR++N+ TA +L
Sbjct: 120 LLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALN 179
Query: 253 YGFEKKN------NETILVF-DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRI 305
YG K++ I+VF D+G F VS G +VL T+ D LGG +FD+++
Sbjct: 180 YGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKL 239
Query: 306 VDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHI 365
V+ + FK +D +AL RL + EK K +SS T++ L D K +
Sbjct: 240 VEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSS-NSTDLPLNIECFMND--KDV 296
Query: 366 DTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM 425
+ R +FEELC+DLL R++ P+ + L L +D+ V +VGG+TRIPAV+E + K
Sbjct: 297 SGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKF 356
Query: 426 TGREPNVTVNPDEVVALGAAVQAGVLA 452
G++ + T+N DE VA G A+Q +L+
Sbjct: 357 FGKDVSTTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 1e-66
Identities = 137/387 (35%), Positives = 210/387 (54%), Gaps = 17/387 (4%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
VVGIDLG + VA G + N R TP+ +++ +R +G AK Q + N +
Sbjct: 2 VVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPK-NRSIGAAAKSQVISNAK 60
Query: 138 NTFFSVKRFIGRKMVE--VDEESKQVSYRVVRDENGNVKLECPAIG--KQFAAEEISAQV 193
NT KRF GR + V E ++Y +V+ G+ ++ + + F E+++A +
Sbjct: 61 NTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAML 120
Query: 194 LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAY 253
L KL + A L V VV+VP ++ D++R + DA +IAGL+ LR++NE TA +LAY
Sbjct: 121 LTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAY 180
Query: 254 GFEKKN------NETILVF-DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 306
G K++ +VF D+G + VSV G +VL+T+ DT LGG FD+ +V
Sbjct: 181 GIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLV 240
Query: 307 DWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNIS-LPFITATADGPKHI 365
++ F + +D+ +AL RL++ EK L L N S LP +
Sbjct: 241 NYFCEEFGKKYKLDIKSKIRALLRLSQECEK----LKKLMSANASDLPLNIECFMNDIDV 296
Query: 366 DTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM 425
T+ R KF E+C DLL R++ P+ + L AKL +D+ V +VGG+TRIPAV+E + K
Sbjct: 297 SGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKF 356
Query: 426 TGREPNVTVNPDEVVALGAAVQAGVLA 452
G+E + T+N DE VA G A+Q +L+
Sbjct: 357 FGKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 2e-66
Identities = 122/380 (32%), Positives = 202/380 (53%), Gaps = 16/380 (4%)
Query: 80 GIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENT 139
G+DLG NS +A IV N R+TPSVV + +R +G+ K + N +NT
Sbjct: 2 GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK-NRYLGETGKNKQTSNIKNT 60
Query: 140 FFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIGKQ--FAAEEISAQVLR 195
++KR IG + ++ESK + ++V ++ E G++ F+A +++A +
Sbjct: 61 VANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFID 120
Query: 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF 255
K+ D + ++T + VP ++ + QR DA RIAGL+ +RI+N+ TAA ++YG
Sbjct: 121 KVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGI 180
Query: 256 EKKN----NET---ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 308
K + E + D+G ++ S++ G +VL T+ D H GG DFD I +
Sbjct: 181 FKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITEH 240
Query: 309 LASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTT 368
A FK ID+ ++ +A R+ AEK K LS+ T S+ + D + +
Sbjct: 241 FADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVD----VSSQ 296
Query: 369 LTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR 428
L+R + EEL LL+R+ PV +L AKLS +++D V ++GG+TRIP +++ + + G+
Sbjct: 297 LSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGK 356
Query: 429 EPNVTVNPDEVVALGAAVQA 448
+ T+N DE +A GAA
Sbjct: 357 PLSTTLNQDEAIAKGAAFIC 376
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 2e-64
Identities = 122/391 (31%), Positives = 199/391 (50%), Gaps = 27/391 (6%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
V+GI+ G T S++A + GK ++ N +G+R PS ++Y G AK Q + N +
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYH-GEQEYHGNQAKAQLIRNAK 60
Query: 138 NTFFSVKRFIGRKMVEVDEESKQVSYRV---VRDENGNVKLECPAIGKQ--FAAEEISAQ 192
NT + + +G+ E+D + + V V D G V+ + + K+ E++ +
Sbjct: 61 NTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTVR 120
Query: 193 VLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLA 252
LR+L + A FL V AV++VP +F+D Q A A AGL VL++I EP AA LA
Sbjct: 121 FLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLA 180
Query: 253 YG-----FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 307
Y ++ + ++V D GG DVSV+ V G++ +L+T+ D LGGD D +V
Sbjct: 181 YDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALVK 240
Query: 308 WLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHID- 366
A F + D + +AL +L +E K LS+ T S + + A+G ID
Sbjct: 241 HFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCS---VESLAEG---IDF 294
Query: 367 -TTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM 425
+++ R++FE L S + + V +++ A L D+DEV+LVGG+ P + + +
Sbjct: 295 HSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYL 354
Query: 426 TGREPNVT--------VNPDEVVALGAAVQA 448
+T ++P E+VA G A+QA
Sbjct: 355 FPETTTITAPITVSKALDPSELVARGCAIQA 385
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 206 bits (524), Expect = 7e-60
Identities = 124/387 (32%), Positives = 207/387 (53%), Gaps = 17/387 (4%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
VVGIDLG N +A G + N R TP+ ++ R +G AK Q V N
Sbjct: 2 VVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSR-TRAIGNAAKSQIVTNVR 60
Query: 138 NTFFSVKRFIGRKMVE--VDEESKQVSYRVVRDENGNVKLECPAIGKQ--FAAEEISAQV 193
NT K+ GR + V E ++ Y + + NG+V ++ + ++ FA E+++ +
Sbjct: 61 NTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGML 120
Query: 194 LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAY 253
L KL + + L V V+++P++F D++R + A ++AGL+ LR++NE TA +LAY
Sbjct: 121 LAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAY 180
Query: 254 GFEKKN-------NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 306
G K++ ++ D+G + VSV G +VL+T+ D +LGG +FD+ +V
Sbjct: 181 GIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEALV 240
Query: 307 DWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNIS-LPFITATADGPKHI 365
D+ FK I++ ++ +AL RL + EK L L N S LP +
Sbjct: 241 DYFCDEFKTKYKINVKENSRALLRLYQECEK----LKKLMSANASDLPLNIECFMNDLDV 296
Query: 366 DTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM 425
+ + R +FE+LC+ LL R++ P++ + A L +D+ + +VGG+TRIPAV+E +
Sbjct: 297 SSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSF 356
Query: 426 TGREPNVTVNPDEVVALGAAVQAGVLA 452
++ + T+N DE VA G A+Q +L+
Sbjct: 357 FLKDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 154 bits (393), Expect = 4e-41
Identities = 106/444 (23%), Positives = 166/444 (37%), Gaps = 102/444 (22%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR-----LVGQIAKRQAV 133
+GID GT+NSAVA G+P +V G T PS + + L G+ A +
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREVLFGRAAIAAYL 60
Query: 134 VNPENTFF--SVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISA 191
P S+K F+G + E G++ E++ A
Sbjct: 61 EGPGEGRLMRSLKSFLGSSLFR----------------------ETRIFGRRLTFEDLVA 98
Query: 192 QVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQ----RTATKD---AGRIAGLDVLRIIN 244
+ L +L A L + + V+ P +F A A R AG +
Sbjct: 99 RFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQY 158
Query: 245 EPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVF-------EVLSTSGDTHLG 297
EP AA+L Y E +LV D+GGGT D S++ +G ++L+ SG +G
Sbjct: 159 EPIAAALDYEQRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSG-VRIG 217
Query: 298 GDDFDKRIVD------------------------WLASNFKRDEGIDLLKDKQA------ 327
G DFD+R+ ++ I+ L +
Sbjct: 218 GTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLRELRE 277
Query: 328 -------------LQRLTET---------AEKAKMELSSLTQTNISLPFITATADGPKHI 365
L + E E AK+ LSS +T I L F+ +
Sbjct: 278 LARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLDFV------EVGL 331
Query: 366 DTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM 425
+ +TR +FE + L+R++ V+ +L A +S +D V L GGS+ +PAV++
Sbjct: 332 EAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAAR 391
Query: 426 TGREPNVTVNPDEVVALGAAVQAG 449
V + VA G A+ A
Sbjct: 392 FPAARIVEGDAFGSVASGLALAAA 415
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-20
Identities = 96/420 (22%), Positives = 151/420 (35%), Gaps = 73/420 (17%)
Query: 78 VVGIDLGTTNS--AVAAMEGGKPTI--VTNAEGQRT-----TPSVVAYTKNGD-RLVG-- 125
VVGID GTT S A A ++ P I +T G P+ + Y G G
Sbjct: 2 VVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGYE 61
Query: 126 -QIAKRQAVVNPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQF 184
+ + E F + F K+ +D + +
Sbjct: 62 AEREYAELEAEDEGWLF-FEWF---KL-LLDP-DALKLQGDDKL---------KPLPPGK 106
Query: 185 AAEEISAQVLRKLVDDASKFLNDSVTKA---------VVTVPAYFNDSQRTATKDAGRIA 235
A ++ A LR L + A + L + V+TVPA ++D+ + A ++A A
Sbjct: 107 TAVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKA 166
Query: 236 GL-------DVLRIINEPTAASLA------YGFEKKNNETILVFDLGGGTFDVSVLEV-- 280
GL D L I+ EP AA+L K + LV D GGGT D++V EV
Sbjct: 167 GLVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTS 226
Query: 281 -GDGVFEVLST-SGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKA 338
+ L+ SG G D+ + L K L E
Sbjct: 227 VEPLRLKELAAGSGGLC-GSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETI 285
Query: 339 KMELSSLT-QTNISLPFITAT-ADGPKH-ID---TTLTRVK----FEELCSDLLDRLKTP 388
K TNI LP A P+ I ++ F+ + +++D ++
Sbjct: 286 KRSFGGTDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQ 345
Query: 389 VETSLRDAKLSFKDLDEVILVGGSTRIPAVQE-LVKKMTGREPNVTV--NPDEVVALGAA 445
+E + + K+ + + LVGG P ++ L ++ + R V +P V GA
Sbjct: 346 LEQAEKGDKVKY-----IFLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQLAVVRGAV 400
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 9e-16
Identities = 98/386 (25%), Positives = 160/386 (41%), Gaps = 92/386 (23%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRL--VGQIAKRQAVVNP 136
+GIDLGT N+ V G IV N PSVVA ++ VG+ AK
Sbjct: 1 IGIDLGTANTLVYVKGKG---IVLNE------PSVVAIDTKTGKILAVGEEAKE------ 45
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECP----AIGKQFAAEEISAQ 192
+GR GN+++ P I A E +
Sbjct: 46 ---------MLGR-------------------TPGNIEVIRPLKDGVIADFEATEAMLRY 77
Query: 193 VLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLA 252
++K V S F V V+ VP+ + +R A DA AG + +I EP AA++
Sbjct: 78 FIKK-VKGRSLFFRPRV---VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIG 133
Query: 253 YGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312
G + + +V D+GGGT +++V+ +G G+ V+S S +GGDDFD+ I+ ++
Sbjct: 134 AGLDIFEPKGNMVVDIGGGTTEIAVISLG-GI--VVSKS--IRVGGDDFDEAIIRYVRRK 188
Query: 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITA---TADG-PKH--ID 366
+ LL ++ TAE+ K+E+ S + G P+ +
Sbjct: 189 YN------LLIGER-------TAEEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTVEVT 235
Query: 367 TTLTRVKFEELCSDLLDRLK-----TPVETSLRDAKLSFKDLDE--VILVGGSTRIPAVQ 419
+ R +E ++++ +K TP E + D+ + ++L GG + +
Sbjct: 236 SEEVREALKEPLDEIVEAIKSVLEKTPPELA--------ADILDRGIVLTGGGALLRGLD 287
Query: 420 ELVKKMTGREPNVTVNPDEVVALGAA 445
EL+ + TG V +P VA GA
Sbjct: 288 ELISEETGLPVRVAEDPLTCVAKGAG 313
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 2e-12
Identities = 96/384 (25%), Positives = 153/384 (39%), Gaps = 90/384 (23%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRL--VGQIAKRQAVVNP 136
+GIDLGT N+ V G IV N PSVVA ++ VG AK+ P
Sbjct: 4 IGIDLGTANTLVYVKGKG---IVLN------EPSVVAINTKTKKVLAVGNEAKKMLGRTP 54
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
N V+ R ++D G I E + ++K
Sbjct: 55 GNI---------------------VAVRPLKD--G-------VIADFEVTEAMLKYFIKK 84
Query: 197 LVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG-- 254
+ S + V+ VP+ + +R A K+A + AG + +I EP AA++ G
Sbjct: 85 VHGRRSLSK----PRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGLP 140
Query: 255 -FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 313
E N +V D+GGGT +V+V+ +G V TS + GD+ D+ I+ ++ +
Sbjct: 141 VEEPTGN---MVVDIGGGTTEVAVISLGGIV-----TSKSVRVAGDEMDEAIIKYIRKKY 192
Query: 314 KRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATAD---G-PK--HIDT 367
G TAE+ K+E+ S T D G PK I +
Sbjct: 193 NLLIGE-------------RTAERIKIEIGSAYPTEEEEKMEIRGRDLVTGLPKTIEISS 239
Query: 368 TLTRVKFEELCSDLLDRLK-----TPVETSLRDAKLSFKDLDE--VILVGGSTRIPAVQE 420
R +E S +++ +K TP E + D+ + ++L GG + + +
Sbjct: 240 EEVREALKEPVSAIVEAVKEVLEKTPPELA--------ADIVDRGIVLTGGGALLRGLDK 291
Query: 421 LVKKMTGREPNVTVNPDEVVALGA 444
L+ TG ++ +P VALG
Sbjct: 292 LLSDETGLPVHIAEDPLTCVALGT 315
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 93/384 (24%), Positives = 144/384 (37%), Gaps = 77/384 (20%)
Query: 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVN 135
+GIDLGT N+ V G IV N PSVVA G K V
Sbjct: 6 SNDIGIDLGTANTLVYVKGKG---IVLN------EPSVVAIESEGK------TKVVLAVG 50
Query: 136 PENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLR 195
E K+ +GR V+ R ++D G I E + ++
Sbjct: 51 EE-----AKQMLGRTP------GNIVAIRPMKD--G-------VIADFEVTELMLKYFIK 90
Query: 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG- 254
K+ + S F + V+ VP+ D +R A K+A AG + +I EP AA A G
Sbjct: 91 KVHKNGSSFPKPRI---VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAA--AIGA 145
Query: 255 ----FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLA 310
E + +V D+GGGT +V+V+ +G V +S +GGD D+ I+ ++
Sbjct: 146 GLPIMEPTGS---MVVDIGGGTTEVAVISLGGIV-----SSSSVRVGGDKMDEAIIVYVR 197
Query: 311 SNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTN------ISLPFITATADGPKH 364
+ G TAEK K+E+ S + + PK
Sbjct: 198 KKYNLLIGE-------------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKT 244
Query: 365 IDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSF-KDLDE--VILVGGSTRIPAVQEL 421
I + E + L+ + + L D+ E ++L GG + + L
Sbjct: 245 ITINSEEI--AEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRL 302
Query: 422 VKKMTGREPNVTVNPDEVVALGAA 445
+ + TG + +P VA G
Sbjct: 303 LSEETGVPVIIADDPLTCVAKGTG 326
|
Length = 342 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 91/383 (23%), Positives = 157/383 (40%), Gaps = 83/383 (21%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 138
+GIDLGT N+ V G IV N PSVVA + D
Sbjct: 5 IGIDLGTANTLVYVKGRG---IVLNE------PSVVAIRTDRDAKT-------------- 41
Query: 139 TFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLV 198
+ ++ V E+K++ + GN+ P A E++ ++++ +
Sbjct: 42 ----------KSILAVGHEAKEMLGKT----PGNIVAIRPMKDGVIADFEVTEKMIKYFI 87
Query: 199 DDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKK 258
+ + V+ VP+ +R A K++ AG + +I EP AA++ G +
Sbjct: 88 KQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE 147
Query: 259 NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEG 318
+V D+GGGT +V+V+ +G V S +GGD+FD+ I++++ +
Sbjct: 148 EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRTY----- 197
Query: 319 IDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHID-------TTLTR 371
+LL +Q TAE+ K+E+ S N D P+ ++ T L R
Sbjct: 198 -NLLIGEQ-------TAERIKIEIGSAYPLN----------DEPRKMEVRGRDLVTGLPR 239
Query: 372 VKFEELCSDLLDRLKTPVETSLRDAKLSF--------KDLDE--VILVGGSTRIPAVQEL 421
E ++ + L+ PV + K + D+ E ++L GG + + +L
Sbjct: 240 -TIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKL 298
Query: 422 VKKMTGREPNVTVNPDEVVALGA 444
+ K TG V +P VA G
Sbjct: 299 LSKETGLPVIVADDPLLCVAKGT 321
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 6e-10
Identities = 92/376 (24%), Positives = 150/376 (39%), Gaps = 74/376 (19%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAY-TKNGDRL-VGQIAKRQAVVNP 136
+GIDLGT N V + G I+ N PSVVA T+ L +G AK P
Sbjct: 7 IGIDLGTANILVYSKNKG---IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTP 57
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
K V+ R ++D A +++ +L++
Sbjct: 58 ---------------------GKIVAVRPMKD-------------GVIADYDMTTDLLKQ 83
Query: 197 LVDDASKFLNDSVTK--AVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
++ A K + + K VV P+ +R A DA + G + +I EP AA++
Sbjct: 84 IMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGAD 143
Query: 255 FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314
+V D+GGGT +V+++ G V + +GGD D+ IV ++ +
Sbjct: 144 LPVDEPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSFVRKKY- 197
Query: 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATAD----GPKHIDTTLT 370
+LL ++ TAE+ KME+ + D PK I TL
Sbjct: 198 -----NLLIGER-------TAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTI--TLE 243
Query: 371 RVKFEELCSDLLDRLKTPVETSLRDA--KLSFKDLDE-VILVGGSTRIPAVQELVKKMTG 427
+ + + L + + +L D +LS +D VIL GG + ++E + +
Sbjct: 244 SKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIV 303
Query: 428 REPNVTVNPDEVVALG 443
+V NP E VA+G
Sbjct: 304 VPVHVAANPLESVAIG 319
|
Length = 335 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 7e-09
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 15/134 (11%)
Query: 165 VVRDENGNVKLEC-----PAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAY 219
V D +G + E + + LR+L+ +A + L + +T P
Sbjct: 13 GVADLDGEILPEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGG 72
Query: 220 FNDSQRTAT----------KDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLG 269
R A G + ++N+ AA+LA G K +T+LV DLG
Sbjct: 73 VPKENREVIILPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTVLVVDLG 132
Query: 270 GGTFDVSVLEVGDG 283
GT ++++E G G
Sbjct: 133 TGTTGIAIVEDGKG 146
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 74/302 (24%), Positives = 122/302 (40%), Gaps = 82/302 (27%)
Query: 201 ASKFLNDSVTKAVVTVPAYFN-----DSQRTA----TKDAGRIAGLDVLRIINEPTAASL 251
A L ++T+AV+ P F ++ R A + A R AG + EP AA L
Sbjct: 141 AEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKR-AGFKDVEFQFEPVAAGL 199
Query: 252 AYGFEKKNNETILVFDLGGGTFDVSVLEVG-------DGVFEVLSTSGDTHLGGDDFD-- 302
+ + +LV D+GGGT D S+L +G D +L SG +GG+D D
Sbjct: 200 DFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIA 258
Query: 303 ---KRIVDWLASNFKRDEGI--------------------------------DLLKDKQ- 326
K+++ L + ++GI DL++D +
Sbjct: 259 LAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDARE 318
Query: 327 --ALQRLTE------------TAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRV 372
+ RL + +AE+AK+ LS +T SL FI+ + T +++
Sbjct: 319 PEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFISD------GLATEISQQ 372
Query: 373 KFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNV 432
EE S L R+ V+ +L A+ D + L GGS R P ++ + + P +
Sbjct: 373 GLEEAISQPLARILELVQLALDQAQ---VKPDVIYLTGGSARSPLIRA---ALAQQLPGI 426
Query: 433 TV 434
+
Sbjct: 427 PI 428
|
Length = 450 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-08
Identities = 75/276 (27%), Positives = 118/276 (42%), Gaps = 75/276 (27%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRL--VGQIAKRQAVV 134
K +GIDLGT N+ V G IV N E PSVVA ++ VG+ AK
Sbjct: 9 KDIGIDLGTANTLVYVKGKG---IVLN-E-----PSVVAIDTKTGKVLAVGEEAK----- 54
Query: 135 NPENTFFSVKRFIGR---KMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISA 191
+GR + + R ++D G + A E +
Sbjct: 55 ----------EMLGRTPGNIEAI---------RPLKD--GVI-----------ADFEATE 82
Query: 192 QVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASL 251
+LR + A + V+ VP+ + +R A ++A AG + +I EP AA++
Sbjct: 83 AMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAI 142
Query: 252 AYG---FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 308
G E N +V D+GGGT +V+V+ +G G+ V S S + GD+ D+ IV +
Sbjct: 143 GAGLPVTEPVGN---MVVDIGGGTTEVAVISLG-GI--VYSES--IRVAGDEMDEAIVQY 194
Query: 309 LASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSS 344
+ + LL ++ TAE+ K+E+ S
Sbjct: 195 VRRKYN------LLIGER-------TAEEIKIEIGS 217
|
Length = 335 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 8e-08
Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 54/240 (22%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRL--VGQIAKRQAVVNP 136
+GIDLGT N V G IV N PSVVA KN +++ VG+ A+R P
Sbjct: 6 IGIDLGTANVLVYVKGKG---IVLN------EPSVVAIDKNTNKVLAVGEEARRMVGRTP 56
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
N V+ R +RD G + A +++ ++L+
Sbjct: 57 GNI---------------------VAIRPLRD--GVI-----------ADYDVTEKMLKY 82
Query: 197 LVDDA--SKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
++ A +F S + ++ +P ++ A ++A AG + +I EP AA++ G
Sbjct: 83 FINKACGKRFF--SKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAG 140
Query: 255 FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314
+ +V D+GGGT D++VL +G V TS + GD FD+ I+ ++ +K
Sbjct: 141 LDISQPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRKKYK 195
|
Length = 336 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 190 SAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAA 249
+ +++R+L D K L T A +P + + AGL+VL +++EPTAA
Sbjct: 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAA 133
Query: 250 SLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHL 296
+ + V D+GGGT +S+++ G ++ +G TH+
Sbjct: 134 ADVLQLDDG-----GVVDIGGGTTGISIVKKGKVIYSADEPTGGTHM 175
|
Length = 277 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 190 SAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAA 249
+ +++R+L D + L +T A +P + + AG++VL +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 250 SLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHL 296
+ + V D+GGGT +S+L+ G ++ +G TH+
Sbjct: 102 AAVLQIKNG-----AVVDVGGGTTGISILKKGKVIYSADEPTGGTHM 143
|
Length = 239 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 190 SAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRI------AGLDVLRII 243
+ ++R+L + L +T A +P T+ D I AGL+V ++
Sbjct: 69 AVTIVRRLKATLEEKLGRELTHAATAIPP------GTSEGDPRAIINVVESAGLEVTHVL 122
Query: 244 NEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHL 296
+EPTAA+ G + V D+GGGT +S+L+ G V+ +G TH+
Sbjct: 123 DEPTAAAAVLGIDNG-----AVVDIGGGTTGISILKDGKVVYSADEPTGGTHM 170
|
Length = 267 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 392 SLRDAKLSFKDLD-----EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAV 446
+LRD+ ++ + L+GG + PA ++++ + G P +E ALGAA+
Sbjct: 375 ALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGT-PVDVPEGEEGPALGAAI 433
Query: 447 QAGVLAGDVSDIVLLD 462
A G+ L
Sbjct: 434 LAAWALGEKDLAALCS 449
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 74/377 (19%), Positives = 137/377 (36%), Gaps = 79/377 (20%)
Query: 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 137
++GIDLG N + GG TI+ PSVVA + + VV +
Sbjct: 1 IIGIDLG--NGNTKVVYGGGKTILF--------PSVVAPGEEEPLEGLLDPEDNDVVEYD 50
Query: 138 NTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGN---VKLECPAIGKQFAAEEISAQV- 193
++ F+G E+ + D+ + L A+ K+ E+ +
Sbjct: 51 GKYY----FVG----ELALREGLAEDYLDEDKYESDVYKALLLAALAKEAKKNEVEVNLV 102
Query: 194 ----LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAA 249
+ + + + + + + +V + T ++ +++ E A
Sbjct: 103 TGLPVSEYKEQKEEL-KERLKRGKHSV-KFNEGKTVTIN--------IEDVKVFPEGVGA 152
Query: 250 SLAYGFEK---KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 306
++ ++ +LV D+GGGT DV V + G V S+SG LG D +
Sbjct: 153 LFDLLLDEGGLLKDKKVLVIDIGGGTTDVVVFDNGK---PVESSSGSLELGVSD----LY 205
Query: 307 DWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHID 366
+ +A ++ GIDL + + + E K++ + I
Sbjct: 206 EAIAKELNKEYGIDL-----SDEEIEEILRNGKIK----------------NYGKEEDIT 244
Query: 367 TTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT 426
+ EE +L+ LK L D+D+VILVGG ++E +K++
Sbjct: 245 EIIEEAA-EEYAEKILNELK---------EFLGLSDVDKVILVGGGA--ILLKEYLKELF 292
Query: 427 GREPNVTVNPDEVVALG 443
+ +P A G
Sbjct: 293 PENVVLVDDPQFANARG 309
|
ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments. Length = 312 |
| >gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 0.001
Identities = 40/132 (30%), Positives = 73/132 (55%), Gaps = 18/132 (13%)
Query: 213 VVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGT 272
V+ VP+ + +R A +++ AG + +I EP AA++ G +V D+GGGT
Sbjct: 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGT 159
Query: 273 FDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLT 332
+V+V+ +G G+ V S S +GGD FD+ I++++ +R+ + L+ ++
Sbjct: 160 TEVAVISLG-GI--VYSKS--VRVGGDKFDEAIINYV----RRNYNL-LIGER------- 202
Query: 333 ETAEKAKMELSS 344
TAE+ K+E+ S
Sbjct: 203 -TAERIKIEIGS 213
|
Length = 334 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 714 | |||
| KOG0100 | 663 | consensus Molecular chaperones GRP78/BiP/KAR2, HSP | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| KOG0102 | 640 | consensus Molecular chaperones mortalin/PBP74/GRP7 | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| KOG0101 | 620 | consensus Molecular chaperones HSP70/HSC70, HSP70 | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| KOG0103 | 727 | consensus Molecular chaperones HSP105/HSP110/SSE1, | 100.0 | |
| KOG0104 | 902 | consensus Molecular chaperones GRP170/SIL1, HSP70 | 100.0 | |
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 100.0 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.97 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.97 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.96 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.92 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.91 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.83 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.74 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.69 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.65 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.54 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 99.5 | |
| PTZ00452 | 375 | actin; Provisional | 99.45 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 99.45 | |
| PTZ00004 | 378 | actin-2; Provisional | 99.39 | |
| PTZ00281 | 376 | actin; Provisional | 99.38 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 99.38 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 99.33 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 99.28 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 99.27 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 99.06 | |
| KOG0679 | 426 | consensus Actin-related protein - Arp4p/Act3p [Cyt | 98.98 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.94 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 98.94 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 98.78 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.5 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 98.45 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 98.44 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 98.43 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 98.37 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 98.27 | |
| KOG0676 | 372 | consensus Actin and related proteins [Cytoskeleton | 98.16 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 98.14 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 98.11 | |
| KOG0797 | 618 | consensus Actin-related protein [Cytoskeleton] | 97.78 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 97.67 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 97.48 | |
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 97.08 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 97.04 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 96.61 | |
| KOG0677 | 389 | consensus Actin-related protein Arp2/3 complex, su | 96.51 | |
| PRK15027 | 484 | xylulokinase; Provisional | 96.09 | |
| KOG0680 | 400 | consensus Actin-related protein - Arp6p [Cytoskele | 95.96 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 95.86 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 95.81 | |
| PLN02669 | 556 | xylulokinase | 95.71 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 95.36 | |
| KOG0681 | 645 | consensus Actin-related protein - Arp5p [Cytoskele | 95.28 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 95.27 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 95.18 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 95.17 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 95.12 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 95.08 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 95.03 | |
| PRK04123 | 548 | ribulokinase; Provisional | 95.03 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 94.96 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 94.87 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 94.82 | |
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 94.69 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 94.67 | |
| PF14574 | 412 | DUF4445: Domain of unknown function (DUF4445); PDB | 94.64 | |
| PLN02295 | 512 | glycerol kinase | 94.55 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 94.53 | |
| KOG2517 | 516 | consensus Ribulose kinase and related carbohydrate | 94.52 | |
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 94.2 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 94.19 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 94.11 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 93.94 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 93.85 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 93.81 | |
| KOG2531 | 545 | consensus Sugar (pentulose and hexulose) kinases [ | 93.2 | |
| PRK13321 | 256 | pantothenate kinase; Reviewed | 93.15 | |
| PRK14878 | 323 | UGMP family protein; Provisional | 92.9 | |
| PRK09604 | 332 | UGMP family protein; Validated | 92.87 | |
| PF13941 | 457 | MutL: MutL protein | 92.41 | |
| PF02541 | 285 | Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I | 90.51 | |
| PF03702 | 364 | UPF0075: Uncharacterised protein family (UPF0075); | 90.51 | |
| PRK09585 | 365 | anmK anhydro-N-acetylmuramic acid kinase; Reviewed | 90.27 | |
| PRK09698 | 302 | D-allose kinase; Provisional | 89.94 | |
| TIGR00329 | 305 | gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami | 89.38 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 89.09 | |
| TIGR03281 | 326 | methan_mark_12 putative methanogenesis marker prot | 87.53 | |
| TIGR03722 | 322 | arch_KAE1 universal archaeal protein Kae1. This fa | 87.45 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 87.36 | |
| PRK09557 | 301 | fructokinase; Reviewed | 87.26 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 86.22 | |
| PLN02666 | 1275 | 5-oxoprolinase | 85.87 | |
| KOG0681 | 645 | consensus Actin-related protein - Arp5p [Cytoskele | 85.85 | |
| PRK14101 | 638 | bifunctional glucokinase/RpiR family transcription | 84.8 | |
| COG2192 | 555 | Predicted carbamoyl transferase, NodU family [Post | 84.76 | |
| PRK12408 | 336 | glucokinase; Provisional | 84.52 | |
| COG1548 | 330 | Predicted transcriptional regulator/sugar kinase [ | 84.36 | |
| PRK00976 | 326 | hypothetical protein; Provisional | 84.18 | |
| KOG1385 | 453 | consensus Nucleoside phosphatase [Nucleotide trans | 83.33 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 83.21 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 82.8 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 81.85 | |
| COG5026 | 466 | Hexokinase [Carbohydrate transport and metabolism] | 80.32 |
| >KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-140 Score=1069.88 Aligned_cols=598 Identities=52% Similarity=0.825 Sum_probs=579.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
.+.|||||||||||||+++++|+++||.|++|+|.+||+|+|+++ +|++|++|++|...||+||+++.||||||.+++
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 789999999999999999999999999999999999999999999 999999999999999999999999999999996
Q ss_pred -hhhhhccceeEEEEcC-CCcEEEEeC-CCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDE-NGNVKLECP-AIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKD 230 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~-~g~~~v~~~-~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~ 230 (714)
+|.++++|||++++.. ...+.|.+. ++.+.|+||||++|+|.++++.|+.|+|.+++++|+||||||+++||+++++
T Consensus 114 ~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 9999999999999743 345667766 4578999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeEEechhHHHHHHcccccCC-CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHH
Q 005099 231 AGRIAGLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL 309 (714)
Q Consensus 231 Aa~~AGl~~~~li~Ep~AAAlay~~~~~~-~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l 309 (714)
|..+|||+++++||||+|||++|++++++ .+++||||+||||||||++.+++|+|+|+++.||.+|||+|||+++++|+
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHH
Confidence 99999999999999999999999999876 78999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHH
Q 005099 310 ASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPV 389 (714)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i 389 (714)
...|+++++.|++++.+++++|+++||+||+.||+..++.++|++++++ .+|+-++||..||++.-++|.++..++
T Consensus 274 iklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG----~DfSEtLtRAkFEElNmDLFr~TlkPv 349 (663)
T KOG0100|consen 274 IKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDG----VDFSETLTRAKFEELNMDLFRKTLKPV 349 (663)
T ss_pred HHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeecccc----ccccchhhhhHHHHhhhHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999987 889999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc-CCCCCcCCCChhHHHhHHHHHHhHhhCC--CCCcEEEeeccC
Q 005099 390 ETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT-GREPNVTVNPDEVVALGAAVQAGVLAGD--VSDIVLLDVTPL 466 (714)
Q Consensus 390 ~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f-g~~~~~~~np~eaVA~GAa~~aa~ls~~--~~~~~~~dv~~~ 466 (714)
+++|+++++.+.+|+.|+|||||+|||.||++|+++| |+++.+.+|||||||+|||+||..|||. ..++++.|++|+
T Consensus 350 ~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pL 429 (663)
T KOG0100|consen 350 QKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPL 429 (663)
T ss_pred HHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeeccc
Confidence 9999999999999999999999999999999999999 8999999999999999999999999997 689999999999
Q ss_pred CcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEE
Q 005099 467 SLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFD 546 (714)
Q Consensus 467 slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~ 546 (714)
++|||+.+|.|+.+||||+.||+++++.|++..|+|+.+.|++|+|||.+.++|+.||.|.|.||||+|+|.|+|+|+|+
T Consensus 430 tlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFe 509 (663)
T KOG0100|consen 430 TLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFE 509 (663)
T ss_pred cceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEEEEEcCCCceeeeEEccC-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH---h
Q 005099 547 IDANGILSVSAVDKGTGKKQDITITGA-STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE---L 622 (714)
Q Consensus 547 id~~gil~v~a~~~~t~~~~~i~i~~~-~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~---~ 622 (714)
+|.||||+|++.|+.+|++.+|+|+++ +.|++|+|++|++++++|+++|+..++++++||+||+|.|.+++++.+ +
T Consensus 510 vDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekL 589 (663)
T KOG0100|consen 510 VDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKL 589 (663)
T ss_pred EccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHh
Confidence 999999999999999999999999999 899999999999999999999999999999999999999999999976 6
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005099 623 GDKVPAEVKGKVEGKLKELKDAIAEG---STQAMKDTMAALNQEVMQLGQSLYNQPGA 677 (714)
Q Consensus 623 ~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ 677 (714)
..++++++++.+.+++++..+||+.+ +.++|++++++|+..+.||.+++|+.+|+
T Consensus 590 g~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~ 647 (663)
T KOG0100|consen 590 GGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGG 647 (663)
T ss_pred cccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 68999999999999999999999964 69999999999999999999999996433
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-115 Score=1012.08 Aligned_cols=641 Identities=93% Similarity=1.292 Sum_probs=602.1
Q ss_pred CCccccCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhC
Q 005099 69 GPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIG 148 (714)
Q Consensus 69 ~~~~~~~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG 148 (714)
+|++..++.+||||||||||+||++++|++++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++|||||
T Consensus 32 ~~~~~~~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG 111 (673)
T PLN03184 32 GPLRVVAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIG 111 (673)
T ss_pred CCccccCCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhC
Confidence 68888888999999999999999999999999999999999999999987778999999999999999999999999999
Q ss_pred CCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHH
Q 005099 149 RKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTAT 228 (714)
Q Consensus 149 ~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l 228 (714)
+++.+++.+.+.|||.++.+.++.+.+.++..++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++
T Consensus 112 ~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~ 191 (673)
T PLN03184 112 RKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTAT 191 (673)
T ss_pred CCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 99998888889999999998888888877666788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHH
Q 005099 229 KDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 308 (714)
Q Consensus 229 ~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~ 308 (714)
++||++|||++++||+||+|||++|+.....+.++|||||||||||+||+++.++.++|+++.|+.+|||++||+.|++|
T Consensus 192 ~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~ 271 (673)
T PLN03184 192 KDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 271 (673)
T ss_pred HHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHH
Confidence 99999999999999999999999999887778899999999999999999999999999999999999999999999999
Q ss_pred HHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 005099 309 LASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTP 388 (714)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~ 388 (714)
+.++|+.+++.++..+++++.+|+.+||++|+.||.+.++.+.++++..+.+++.+++++|||++||++|+++++++..+
T Consensus 272 ~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~ 351 (673)
T PLN03184 272 LASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTP 351 (673)
T ss_pred HHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999998998888899999999999999999999999999998877654445578999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCc
Q 005099 389 VETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSL 468 (714)
Q Consensus 389 i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~sl 468 (714)
|+++|+++++.+.+|+.|+||||+||||.|+++|+++||.++...+||+++||+|||++|+++++.++++.+.|++|++|
T Consensus 352 i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~~~dv~p~sl 431 (673)
T PLN03184 352 VENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSL 431 (673)
T ss_pred HHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCccceEEEecccccc
Confidence 99999999999999999999999999999999999999998999999999999999999999999889999999999999
Q ss_pred ceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEec
Q 005099 469 GLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 548 (714)
Q Consensus 469 gi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id 548 (714)
|+++.++.+.+|||+|++||++++++|++..|+|+.+.|.||||++.+..+|..||+|.|.++|+++.|.++|+|+|++|
T Consensus 432 gi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id 511 (673)
T PLN03184 432 GLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 511 (673)
T ss_pred eEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CCceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCH
Q 005099 549 ANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPA 628 (714)
Q Consensus 549 ~~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~ 628 (714)
.||+|+|++.+..++++.+++|.....|+++++++++++++++..+|++.+++.++||+||+|||.+|++|+++.+++++
T Consensus 512 ~~GiL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~ 591 (673)
T PLN03184 512 ANGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPA 591 (673)
T ss_pred CCCeEEEEEEecCCCeEEEEEecccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCH
Confidence 99999999999999999999998778899999999999999999999999999999999999999999999878889999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCeee
Q 005099 629 EVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGA-SDSSNKGQDGDVID 707 (714)
Q Consensus 629 ~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 707 (714)
++++++.+.|+++++||+.++.+++++++++|.+.+.++..++|..+|++| +||+||++.+. +++++.|.++||||
T Consensus 592 eer~~l~~~l~~~e~wL~~~d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (673)
T PLN03184 592 DVKEKVEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQSLYNQPGAGG---AGPAPGGEAGSSSSSSSGGDGDDVID 668 (673)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCcccccCCCCCCCCCCCCCceec
Confidence 999999999999999999999999999999999999999999997655543 45666654432 22333444677999
Q ss_pred cccee
Q 005099 708 ADFTD 712 (714)
Q Consensus 708 ~~~~~ 712 (714)
|||+|
T Consensus 669 ~~~~~ 673 (673)
T PLN03184 669 ADFTD 673 (673)
T ss_pred cccCC
Confidence 99986
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-110 Score=964.82 Aligned_cols=628 Identities=47% Similarity=0.766 Sum_probs=579.4
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
.+.+||||||||||+||++++|.+++++|..|+|.+||+|+|.++ ++++|+.|+.+...+|.++++++||+||+.+++
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCC-CEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 456999999999999999999999999999999999999999876 899999999999999999999999999999885
Q ss_pred -hhhhhccceeEEEEcCCCcEE--EEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGNVK--LECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKD 230 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~~~--v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~ 230 (714)
++...+.|||.++.+.++... +.+.++.+.++|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 788888999999887777544 45555567899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeEEechhHHHHHHcccccCC--CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHH
Q 005099 231 AGRIAGLDVLRIINEPTAASLAYGFEKKN--NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 308 (714)
Q Consensus 231 Aa~~AGl~~~~li~Ep~AAAlay~~~~~~--~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~ 308 (714)
||++|||++++||+||+|||++|+..... +.++|||||||||||+||+++.++.++++++.|+.++||++||..|++|
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~ 241 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEF 241 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHH
Confidence 99999999999999999999999986532 6789999999999999999999999999999999999999999999999
Q ss_pred HHhcccccc-CCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHH
Q 005099 309 LASNFKRDE-GIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKT 387 (714)
Q Consensus 309 l~~~~~~~~-~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~ 387 (714)
+.++|+.++ +.++..+++++.+|+.+||++|+.||.+.++.+.++.++++ .+++++|||++||++|+|+++++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~----~d~~~~itR~~fe~l~~~l~~~~~~ 317 (653)
T PTZ00009 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG----IDYNVTISRARFEELCGDYFRNTLQ 317 (653)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCC----ceEEEEECHHHHHHHHHHHHHHHHH
Confidence 999998766 46777889999999999999999999999999999887765 7899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcC-CCCCcCCCChhHHHhHHHHHHhHhhCC----CCCcEEEe
Q 005099 388 PVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTG-REPNVTVNPDEVVALGAAVQAGVLAGD----VSDIVLLD 462 (714)
Q Consensus 388 ~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg-~~~~~~~np~eaVA~GAa~~aa~ls~~----~~~~~~~d 462 (714)
+|+++|+++++++.+|+.|+||||+||||+|+++|+++|+ .++..++||+++||+|||++|+++++. ++++.+.|
T Consensus 318 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~d 397 (653)
T PTZ00009 318 PVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLD 397 (653)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEe
Confidence 9999999999999999999999999999999999999995 578899999999999999999999874 57899999
Q ss_pred eccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeE
Q 005099 463 VTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 542 (714)
Q Consensus 463 v~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~ 542 (714)
++|++||++..++.+.+|||+|++||++++++|++..|+|+.+.|.||||++....+|..||+|.|.++|+.++|.++|+
T Consensus 398 v~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~ 477 (653)
T PTZ00009 398 VTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477 (653)
T ss_pred ecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEecCCceEEEEEEEcCCCceeeeEEccC-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005099 543 VKFDIDANGILSVSAVDKGTGKKQDITITGA-STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE 621 (714)
Q Consensus 543 v~f~id~~gil~v~a~~~~t~~~~~i~i~~~-~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~ 621 (714)
|+|++|.||+|+|++.++.++++..++|... ..|++++++++++++.++..+|+..+++.+++|+||+|||++|++|++
T Consensus 478 v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~ 557 (653)
T PTZ00009 478 VTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQD 557 (653)
T ss_pred EEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 9999999999999999999999999988755 679999999999999999999999999999999999999999999974
Q ss_pred --hccCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCCCC----CCCC
Q 005099 622 --LGDKVPAEVKGKVEGKLKELKDAIAEG---STQAMKDTMAALNQEVMQLGQSLYNQPGAG-AAPGAGPTP----GAEA 691 (714)
Q Consensus 622 --~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~-~~~~~~~~~----~~~~ 691 (714)
+.+++++++++++.+.++++++||+++ +.++|++++++|++.++|+..|+|..++|| |+||+||-| |+++
T Consensus 558 ~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (653)
T PTZ00009 558 EKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAG 637 (653)
T ss_pred hhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCC
Confidence 788999999999999999999999975 588999999999999999999999776665 555555555 3333
Q ss_pred CCCCCCCCCCCCCeee
Q 005099 692 GASDSSNKGQDGDVID 707 (714)
Q Consensus 692 ~~~~~~~~~~~~~~~~ 707 (714)
+|.+++++||++|++|
T Consensus 638 ~~~~~~~~~~~~~~~~ 653 (653)
T PTZ00009 638 PAGAGASSGPTVEEVD 653 (653)
T ss_pred CCCCCCCCCCccccCC
Confidence 3344566899998876
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-109 Score=955.52 Aligned_cols=599 Identities=61% Similarity=0.993 Sum_probs=570.6
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
|+.+||||||||||+||++++|++.+|+|..|.+.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~ 80 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDEL 80 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhh
Confidence 35799999999999999999999999999999999999999987779999999999999999999999999999999888
Q ss_pred hhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHH
Q 005099 155 DEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRI 234 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~ 234 (714)
+.+.+.+||.+..+++|.+.+.++..++.++|++|++++|++|++.|+.+++.++.++|||||+||++.||++|++||++
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 160 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRI 160 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHH
Confidence 88889999999998889888887766789999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccc
Q 005099 235 AGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~ 314 (714)
|||++++||+||+|||++|+.+...+.++|||||||||||+||+++.++.++|+++.|+.++||++||+.|++|+.++|.
T Consensus 161 AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~ 240 (668)
T PRK13410 161 AGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFL 240 (668)
T ss_pred cCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999987778899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLR 394 (714)
Q Consensus 315 ~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~ 394 (714)
.+++.++..+++++.+|+.+||++|+.||.+..+.+.++++..+.+++.++.++|||++||++|+++++++..+|+++|+
T Consensus 241 ~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~ 320 (668)
T PRK13410 241 EKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALK 320 (668)
T ss_pred hhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999988766556678899999999999999999999999999999
Q ss_pred HcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceeeeC
Q 005099 395 DAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLG 474 (714)
Q Consensus 395 ~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~~~ 474 (714)
++++++.+|+.|+||||+||||+|+++|+++||.++...+||++|||+|||++|+++++..+++.+.|++|++||+++.+
T Consensus 321 ~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~slgie~~~ 400 (668)
T PRK13410 321 DAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIG 400 (668)
T ss_pred HcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeeccccccceecC
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceEE
Q 005099 475 GVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILS 554 (714)
Q Consensus 475 ~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil~ 554 (714)
|.+.+|||||++||++++.+|++..|+|+.+.|+||||++....+|..||+|.|.++|+.|.|.++|+|+|++|.||+|+
T Consensus 401 g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~ 480 (668)
T PRK13410 401 GVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQ 480 (668)
T ss_pred CeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH----hccCCCHHH
Q 005099 555 VSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE----LGDKVPAEV 630 (714)
Q Consensus 555 v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~----~~~~~~~~~ 630 (714)
|++.++.||++..++|.....|+++|+++++++++++..+|+..+++.++||++|+|||+++++|.+ +.+++++++
T Consensus 481 V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~ 560 (668)
T PRK13410 481 VSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQ 560 (668)
T ss_pred EEEEEcCCCceeeeeecccccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHH
Confidence 9999999999999999877889999999999999999999999999999999999999999999964 667899999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 631 KGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 631 ~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
++++...|+++++||++++.+.+++++++|.+.+.++...++.
T Consensus 561 ~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 603 (668)
T PRK13410 561 RRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRA 603 (668)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888888888887777766543
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-109 Score=950.06 Aligned_cols=598 Identities=51% Similarity=0.838 Sum_probs=568.4
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
++.+||||||||||+||++++|++++++|..|.+.+||+|+|.++ ++++|..|+.+...+|.++++++||+||+.+++
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~-~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~ 104 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE 104 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCC-CEEEcHHHHHhhhhCchhHHHHHHHHhccccccH
Confidence 447999999999999999999999999999999999999999876 789999999999999999999999999999875
Q ss_pred -hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
++...+.|||.++.+.++...+... .++.++|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 105 ~v~~~~~~~p~~vv~~~~~~~~i~~~-~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 105 HIQKDIKNVPYKIVRAGNGDAWVQDG-NGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHHHhhccCcEEEEEcCCCceEEEeC-CCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 7888899999999888887777653 36789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
++|||++++||+||+|||++|+.+...+.++|||||||||||+||+++.++.++|+++.|+.+|||+|||+.|++|+.++
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~ 263 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEE 263 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHH
Confidence 99999999999999999999998876688999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETS 392 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~ 392 (714)
|+.+++.++..+++++.+|+.+||++|+.||...++.+.++++..+.+|..++.++|||++||++|+|+++++..+++++
T Consensus 264 f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~ 343 (657)
T PTZ00186 264 FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQC 343 (657)
T ss_pred HhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989888999999999999999999999999999998876655555678999999999999999999999999999
Q ss_pred HHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceee
Q 005099 393 LRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLET 472 (714)
Q Consensus 393 L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~ 472 (714)
|+++++++.+|+.|+||||+||||.|+++|+++||.++...+||++|||+|||++|+++++.++++.+.|++|++|||++
T Consensus 344 L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgie~ 423 (657)
T PTZ00186 344 MKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIET 423 (657)
T ss_pred HHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeecccccccee
Confidence 99999999999999999999999999999999999888899999999999999999999998899999999999999999
Q ss_pred eCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCce
Q 005099 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552 (714)
Q Consensus 473 ~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gi 552 (714)
.+|.+.+|||||++||++++++|++..|+|+.+.|+|||||+.++.+|..||+|+|.++||.|+|.++|+|+|++|.||+
T Consensus 424 ~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGi 503 (657)
T PTZ00186 424 LGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGI 503 (657)
T ss_pred cCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHH
Q 005099 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKG 632 (714)
Q Consensus 553 l~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~ 632 (714)
|+|++.++.||++.+++|.....|+++||++|++++++++.+|+..++..+++|++|.+++.+++.+++. ..+++++++
T Consensus 504 L~V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 582 (657)
T PTZ00186 504 CHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKE 582 (657)
T ss_pred EEEEEEEccCCcEEEEEeccCccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHH
Confidence 9999999999999999999888899999999999999999999999999999999999999999999754 468999999
Q ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005099 633 KVEGKLKELKDAIAEG--STQAMKDTMAALNQEVMQLGQSLYNQP 675 (714)
Q Consensus 633 ~~~~~l~~~~~wl~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~~ 675 (714)
.+.+.++++++||..+ +.+.+++++++|++.+.++..++|+.+
T Consensus 583 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 627 (657)
T PTZ00186 583 NVKTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECGRTEYQQA 627 (657)
T ss_pred HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999975 469999999999999999999998643
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-108 Score=954.26 Aligned_cols=600 Identities=60% Similarity=0.959 Sum_probs=570.1
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhh
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVD 155 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~ 155 (714)
+.+||||||||||+||++++|.+.+++|.+|+|.+||+|+|.++++++||..|+.+...+|.++++++|||||+.+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 46999999999999999999999999999999999999999877799999999999999999999999999999999877
Q ss_pred hhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHc
Q 005099 156 EESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIA 235 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~A 235 (714)
.+.+.+||.++...++.+.+.+. ++.++|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++||++|
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~i~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 159 (653)
T PRK13411 82 EERSRVPYTCVKGRDDTVNVQIR--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIA 159 (653)
T ss_pred HHhhcCCceEEecCCCceEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHc
Confidence 78889999999888887777665 6789999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEechhHHHHHHcccccCC-CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccc
Q 005099 236 GLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 236 Gl~~~~li~Ep~AAAlay~~~~~~-~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~ 314 (714)
||++++||+||+|||++|+..... +.++|||||||||||+||+++.++.++|+++.|+.+|||++||+.|++|+.++|+
T Consensus 160 Gl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~ 239 (653)
T PRK13411 160 GLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQ 239 (653)
T ss_pred CCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987543 6889999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLR 394 (714)
Q Consensus 315 ~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~ 394 (714)
.+++.++..+++++.+|+.+||++|+.||.+.++.+.++++..+..++.++.+.|||++||++|+|+++++..+|+++|+
T Consensus 240 ~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~ 319 (653)
T PRK13411 240 QQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALK 319 (653)
T ss_pred HhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999887655445578899999999999999999999999999999
Q ss_pred HcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcC-CCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceeee
Q 005099 395 DAKLSFKDLDEVILVGGSTRIPAVQELVKKMTG-REPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETL 473 (714)
Q Consensus 395 ~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg-~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~~ 473 (714)
++++.+.+|+.|+||||+||||+|++.|+++|+ ..+..++||+++||+|||++|+++++.++++.+.|++|++||+++.
T Consensus 320 ~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~ 399 (653)
T PRK13411 320 DAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETL 399 (653)
T ss_pred HcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeecccceeeEEec
Confidence 999999999999999999999999999999996 6788899999999999999999999988999999999999999999
Q ss_pred CCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceE
Q 005099 474 GGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGIL 553 (714)
Q Consensus 474 ~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil 553 (714)
++.+.+|||||++||++++++|++..|+|+.+.|.||||++....+|..||+|.|.++|++|.|.++|+|+|++|.||+|
T Consensus 400 ~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil 479 (653)
T PRK13411 400 GEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGIL 479 (653)
T ss_pred CCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHH
Q 005099 554 SVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGK 633 (714)
Q Consensus 554 ~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~ 633 (714)
+|++.+..++++..+.+.....|+++++++++++++++.++|++++++.++||+||+|||.+|++|+++.++++++++++
T Consensus 480 ~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~ 559 (653)
T PRK13411 480 KVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQR 559 (653)
T ss_pred EEEEeeccCCceEeeEEeccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99999999999999998877789999999999999999999999999999999999999999999987778999999999
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005099 634 VEGKLKELKDAIAEG--STQAMKDTMAALNQEVMQLGQSLYNQPGA 677 (714)
Q Consensus 634 ~~~~l~~~~~wl~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ 677 (714)
+.+.++++++||+++ +.+++++++++|++.+.++..++|+++|+
T Consensus 560 i~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 560 AEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999986 48999999999999999999999986544
|
|
| >KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-111 Score=885.57 Aligned_cols=599 Identities=63% Similarity=0.957 Sum_probs=586.7
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
.+.|+|||+||||||++++.++++.++.|.+|.|.+||+|+|+.++++++|..|+++...||.|+++.-||+|||++++
T Consensus 26 ~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ 105 (640)
T KOG0102|consen 26 KGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDP 105 (640)
T ss_pred CCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCH
Confidence 7789999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
++.+++.+||++++..+|..|++. +++.++|.++.+++|.+++++|++|++.++..+|+||||||++.||+++++|.
T Consensus 106 evq~~~k~vpyKiVk~~ngdaw~e~--~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 106 EVQKDIKQVPYKIVKASNGDAWVEA--RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred HHHHHHHhCCcceEEccCCcEEEEe--CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 899999999999999999999998 59999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
++||+++++++|||+|||++|+++.+.+..++|||+||||||++|+.+.+++|+|.++.||.++||+|||..+.+|+...
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~ 263 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSE 263 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHh
Confidence 99999999999999999999999988789999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETS 392 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~ 392 (714)
|++..++++.++.++++||.+++|++|+.||+..+..+++|+++.+..|+.++++++||.+||+++.++++|.+++++++
T Consensus 264 fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~a 343 (640)
T KOG0102|consen 264 FKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKA 343 (640)
T ss_pred hhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceee
Q 005099 393 LRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLET 472 (714)
Q Consensus 393 L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~ 472 (714)
|++|++..+||+.|+||||++|+|.+++.+++.||+.+...+||||+||.|||++++.|++++++++++||+|++|||++
T Consensus 344 L~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgiet 423 (640)
T KOG0102|consen 344 LRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIET 423 (640)
T ss_pred HHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCce
Q 005099 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552 (714)
Q Consensus 473 ~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gi 552 (714)
.+|.|..|||||+.||+++++.|++..|+|+.+.|.++|||+++..+|.++|+|.+.++||.|+|.++|+|+|+||+|||
T Consensus 424 lggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI 503 (640)
T KOG0102|consen 424 LGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGI 503 (640)
T ss_pred hhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHH
Q 005099 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKG 632 (714)
Q Consensus 553 l~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~ 632 (714)
++|+|.|+.|+|.++|++...+.|+++|+++|+++++++...|+.++++.+.+|+.|++++.....+..+.+.++.++.+
T Consensus 504 ~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~ 583 (640)
T KOG0102|consen 504 GTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECE 583 (640)
T ss_pred eeeehhhcccCCccceEEeecCCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhhhhhhCcHHHHH
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005099 633 KVEGKLKELKDAIAE---GSTQAMKDTMAALNQEVMQLGQSLYNQP 675 (714)
Q Consensus 633 ~~~~~l~~~~~wl~~---~~~~~~~~~~~~l~~~~~~i~~~~~~~~ 675 (714)
+|...+.++.+.+.. .+.++++.+...|++...++.+.+|.-+
T Consensus 584 ~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~ 629 (640)
T KOG0102|consen 584 KLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNM 629 (640)
T ss_pred HHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhh
Confidence 999999999998874 5679999999999999999999999854
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-108 Score=951.78 Aligned_cols=599 Identities=56% Similarity=0.911 Sum_probs=573.0
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
++.+||||||||||+||++++|.+++++|..|+|.+||+|+|.+++++++|..|+.+...+|.++++++||+||+.+++
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 4579999999999999999999999999999999999999998777999999999999999999999999999999875
Q ss_pred -hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
++...+.|||.++.++++.+.+.+. ++.++|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 197 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEAQ--GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 6777889999999988888777765 6789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
++|||++++||+||+|||++|+.....+.++|||||||||||+||+++.++.++|+++.|+.++||++||+.|++||.++
T Consensus 198 ~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~ 277 (663)
T PTZ00400 198 KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE 277 (663)
T ss_pred HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876788999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETS 392 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~ 392 (714)
|+++++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+..|+.++.++|||++||++|+|+++++.++|+++
T Consensus 278 f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~ 357 (663)
T PTZ00400 278 FKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKC 357 (663)
T ss_pred hhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888999999999999999999999999999998877665566789999999999999999999999999999
Q ss_pred HHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceee
Q 005099 393 LRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLET 472 (714)
Q Consensus 393 L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~ 472 (714)
|+++++.+.+|+.|+||||+||+|+|+++|+++||.++...+||+++||+|||++|+++++..+++.+.|++|++||+++
T Consensus 358 L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~ 437 (663)
T PTZ00400 358 IKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIET 437 (663)
T ss_pred HHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred eCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCce
Q 005099 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552 (714)
Q Consensus 473 ~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gi 552 (714)
.+|.+.+|||+|++||++++++|++..|+|+.+.|.||||++....+|..||+|.|.++|+.|.|.++|+|+|++|.||+
T Consensus 438 ~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gi 517 (663)
T PTZ00400 438 LGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGI 517 (663)
T ss_pred cCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHH
Q 005099 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKG 632 (714)
Q Consensus 553 l~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~ 632 (714)
|+|++.++.++++.+++|.....|+++++++++++++++.++|++.+++.++||+||+|||.+|++|+++.+.+++++++
T Consensus 518 l~v~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ere 597 (663)
T PTZ00400 518 MNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKD 597 (663)
T ss_pred EEEEEEeccCCcEEEEEeeccccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHH
Confidence 99999999999999999987778999999999999999999999999999999999999999999998788899999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005099 633 KVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQP 675 (714)
Q Consensus 633 ~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~ 675 (714)
++.+.++++++||++++.+++++++++|++.+.++..++|+.+
T Consensus 598 ~i~~~l~~~~~WL~~~d~~~i~~k~~eL~~~l~~l~~k~y~~~ 640 (663)
T PTZ00400 598 ELKQKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQAYKQG 640 (663)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999743
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-107 Score=942.05 Aligned_cols=597 Identities=66% Similarity=1.019 Sum_probs=570.9
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhh
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVD 155 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~ 155 (714)
+.+||||||||||+||++++|.+++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||++..+++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~ 81 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQ 81 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHH
Confidence 46999999999999999999999999999999999999999876799999999999999999999999999999966688
Q ss_pred hhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHc
Q 005099 156 EESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIA 235 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~A 235 (714)
...+.+||.++.+.++...+.+. ++.++|++|++++|++|++.|+.+++.++.++|||||+||++.||++|++||++|
T Consensus 82 ~~~~~~p~~~~~~~~~~~~~~~~--~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 159 (627)
T PRK00290 82 KDIKLVPYKIVKADNGDAWVEID--GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIA 159 (627)
T ss_pred HHhhcCCeEEEEcCCCceEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 88899999999988887777765 6789999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcccc
Q 005099 236 GLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315 (714)
Q Consensus 236 Gl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~ 315 (714)
||++++||+||+|||++|+.....+.++|||||||||||+|++++.++.++++++.|+.++||++||+.|++|+.++|+.
T Consensus 160 Gl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 239 (627)
T PRK00290 160 GLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKK 239 (627)
T ss_pred CCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765678999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRD 395 (714)
Q Consensus 316 ~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~ 395 (714)
+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..|+.++.++|||++|+++|+|+++++.++|+++|++
T Consensus 240 ~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~ 319 (627)
T PRK00290 240 ENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKD 319 (627)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89988888999999999999999999999999999998877654555789999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceeeeCC
Q 005099 396 AKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGG 475 (714)
Q Consensus 396 a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~~~~ 475 (714)
+++++.+|+.|+||||+||||+|++.|+++||.++..++||++|||+|||++|+.+++.++++.+.|++|++||+++.++
T Consensus 320 a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~slgi~~~~~ 399 (627)
T PRK00290 320 AGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGG 399 (627)
T ss_pred cCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred eeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceEEE
Q 005099 476 VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555 (714)
Q Consensus 476 ~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil~v 555 (714)
.+.+|||+|+++|++++++|++..|+|+.+.|.||||++....+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 400 ~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v 479 (627)
T PRK00290 400 VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHV 479 (627)
T ss_pred eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHH
Q 005099 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVE 635 (714)
Q Consensus 556 ~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~ 635 (714)
++.+..++++.+++|.....|++++++++++++.++.++|++.+++.+++|+||+|+|.++++|+++.+++++++++++.
T Consensus 480 ~a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~ 559 (627)
T PRK00290 480 SAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIE 559 (627)
T ss_pred EEEEccCCceeEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999999999987778999999999999999999999999999999999999999999998777899999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005099 636 GKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 674 (714)
Q Consensus 636 ~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~~ 674 (714)
+.|+++++||+.++.+++++++++|+++++++..++|+.
T Consensus 560 ~~l~~~~~wL~~~~~~~i~~k~~~L~~~~~~~~~~~~~~ 598 (627)
T PRK00290 560 AAIKELKEALKGEDKEAIKAKTEELTQASQKLGEAMYQQ 598 (627)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999899999999999999999999999873
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-107 Score=938.60 Aligned_cols=598 Identities=75% Similarity=1.122 Sum_probs=572.7
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhh
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVD 155 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~ 155 (714)
+.+||||||||||+||++++|.+++++|..|.+.+||+|+|.+++++++|..|+.+...+|.++++++||+||+.+++++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~ 81 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEIS 81 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHH
Confidence 46999999999999999999999999999999999999999887789999999999999999999999999999999888
Q ss_pred hhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHc
Q 005099 156 EESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIA 235 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~A 235 (714)
...+.|||.++.+.++.+.+.++..+..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++|
T Consensus 82 ~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 161 (621)
T CHL00094 82 EEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIA 161 (621)
T ss_pred hhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 88888999999888888888776667889999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcccc
Q 005099 236 GLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315 (714)
Q Consensus 236 Gl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~ 315 (714)
||++++||+||+|||++|+.+...+.++|||||||||||+||+++.++.++|+++.|+.++||++||+.|++|+.++|++
T Consensus 162 Gl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 241 (621)
T CHL00094 162 GLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKK 241 (621)
T ss_pred CCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876678999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRD 395 (714)
Q Consensus 316 ~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~ 395 (714)
+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+..++.++...|||++||++|+++++++..+|+++|++
T Consensus 242 ~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 321 (621)
T CHL00094 242 KEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKD 321 (621)
T ss_pred HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888999999999999999999999999999998876544455688899999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceeeeCC
Q 005099 396 AKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGG 475 (714)
Q Consensus 396 a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~~~~ 475 (714)
+++.+.+|+.|+||||+||||.|++.|+++||.++...+||+++||+|||++|+++++..+++.+.|++|++||+++.++
T Consensus 322 a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~~lgi~~~~~ 401 (621)
T CHL00094 322 AKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGG 401 (621)
T ss_pred cCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeeceeeeeeccCC
Confidence 99999999999999999999999999999999989999999999999999999999998899999999999999999999
Q ss_pred eeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceEEE
Q 005099 476 VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555 (714)
Q Consensus 476 ~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil~v 555 (714)
.+.+|||||++||++++++|++..|+|+.+.|.||||++....+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|
T Consensus 402 ~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v 481 (621)
T CHL00094 402 VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSV 481 (621)
T ss_pred EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHH
Q 005099 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVE 635 (714)
Q Consensus 556 ~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~ 635 (714)
++.++.++++..+.+.....|++++++++++++.++..+|++.+++.++||+||+|+|.+|++|+++.+.+++++++++.
T Consensus 482 ~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~~~ 561 (621)
T CHL00094 482 TAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIE 561 (621)
T ss_pred EEeeccCCceeeeeeccchhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999999999987778999999999999999999999999999999999999999999998777889999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 636 GKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 636 ~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
+.++++++||++++.+.+++++++|++.+++++.++|.
T Consensus 562 ~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 562 NLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-105 Score=922.12 Aligned_cols=594 Identities=67% Similarity=1.032 Sum_probs=566.9
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDE 156 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~~ 156 (714)
.+||||||||||+||++++|.+++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+++.
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 80 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTE 80 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHH
Confidence 38999999999999999999999999999999999999999877999999999999999999999999999999988888
Q ss_pred hhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 005099 157 ESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAG 236 (714)
Q Consensus 157 ~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AG 236 (714)
..+.+||. +..+++.+.+.+. ++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++||
T Consensus 81 ~~~~~~~~-v~~~~~~~~~~v~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AG 157 (595)
T TIGR02350 81 EAKRVPYK-VVGDGGDVRVKVD--GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG 157 (595)
T ss_pred HhhcCCee-EEcCCCceEEEEC--CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 88999999 5566777777765 67899999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEechhHHHHHHccccc-CCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcccc
Q 005099 237 LDVLRIINEPTAASLAYGFEK-KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315 (714)
Q Consensus 237 l~~~~li~Ep~AAAlay~~~~-~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~ 315 (714)
|++++||+||+|||++|+... ..+.++|||||||||||+|++++.++.++++++.|+.++||++||+.|++|+.++|++
T Consensus 158 l~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~ 237 (595)
T TIGR02350 158 LEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237 (595)
T ss_pred CceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999876 4578999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRD 395 (714)
Q Consensus 316 ~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~ 395 (714)
+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+..|+.++.++|||++|+++|+|+++++.++|+++|++
T Consensus 238 ~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~ 317 (595)
T TIGR02350 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKD 317 (595)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999998876655555788999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceeeeCC
Q 005099 396 AKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGG 475 (714)
Q Consensus 396 a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~~~~ 475 (714)
+++++.+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+.+++.++++.+.|++|++||+++.++
T Consensus 318 a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~~~~~ 397 (595)
T TIGR02350 318 AGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGG 397 (595)
T ss_pred cCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEEecCC
Confidence 99999999999999999999999999999999889999999999999999999999998899999999999999999999
Q ss_pred eeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceEEE
Q 005099 476 VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555 (714)
Q Consensus 476 ~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil~v 555 (714)
.+.+|||+|++||++++++|++..|+|+.+.|.||||++....+|..||+|.|.++++.+.|.++|+|+|++|.||+|+|
T Consensus 398 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v 477 (595)
T TIGR02350 398 VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477 (595)
T ss_pred ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHH
Q 005099 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVE 635 (714)
Q Consensus 556 ~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~ 635 (714)
++.+..++++.+++++....|++++++++++++.++..+|+..+++.++||+||+|||.+|++|+++.+++++++++++.
T Consensus 478 ~~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~ 557 (595)
T TIGR02350 478 SAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIE 557 (595)
T ss_pred EEEEccCCceEEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99999999999999988788999999999999999999999999999999999999999999998777889999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 636 GKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 636 ~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
+.++++++||+.++.+++++++++|++.+++++.++|+
T Consensus 558 ~~l~~~~~wL~~~d~~~i~~~~~~l~~~~~~~~~~~~~ 595 (595)
T TIGR02350 558 KAVAELKEALKGEDVEEIKAKTEELQQALQKLAEAMYQ 595 (595)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999874
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-107 Score=890.57 Aligned_cols=595 Identities=50% Similarity=0.789 Sum_probs=571.3
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
...+||||||||||||+++.++.++++.|++|++.+||+|+|.++ ++++|..|+.+...||.|+++++||++|+.+++
T Consensus 6 ~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~ 84 (620)
T KOG0101|consen 6 ESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDP 84 (620)
T ss_pred ccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeeccc-ccchhhhhhhhhhcCCcceeeehhhhcCccccch
Confidence 567999999999999999999999999999999999999999998 899999999999999999999999999999996
Q ss_pred -hhhhhccceeEEEEcCCCc--EEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGN--VKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKD 230 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~--~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~ 230 (714)
++.++++|||.+..+.++. +.+.+.++.+.++|+++++++|.++++.++.+++.++.++|+|||+||++.||+++++
T Consensus 85 ~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~ 164 (620)
T KOG0101|consen 85 EVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKD 164 (620)
T ss_pred hhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHH
Confidence 8899999999998655544 4455666678899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeEEechhHHHHHHcccccC--CCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHH
Q 005099 231 AGRIAGLDVLRIINEPTAASLAYGFEKK--NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 308 (714)
Q Consensus 231 Aa~~AGl~~~~li~Ep~AAAlay~~~~~--~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~ 308 (714)
|+.+|||+++++|+||+|||++|+++.+ ...+|||+|+||||||+|++.+.++.++++++.++.++||++||+.|.+|
T Consensus 165 A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h 244 (620)
T KOG0101|consen 165 AALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNH 244 (620)
T ss_pred HHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHH
Confidence 9999999999999999999999998765 36889999999999999999999999999999999999999999999999
Q ss_pred HHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 005099 309 LASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTP 388 (714)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~ 388 (714)
+..+|+++++.++..+++++.||+.+||++|+.||+..++.+.+++++++ .++...|||.+||++|.+++.++..+
T Consensus 245 ~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g----~d~~~~itrarfe~l~~dlf~~~~~~ 320 (620)
T KOG0101|consen 245 FAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRSTLEP 320 (620)
T ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhcc----ccccceeehhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 78999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc-CCCCCcCCCChhHHHhHHHHHHhHhhCC----CCCcEEEee
Q 005099 389 VETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT-GREPNVTVNPDEVVALGAAVQAGVLAGD----VSDIVLLDV 463 (714)
Q Consensus 389 i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f-g~~~~~~~np~eaVA~GAa~~aa~ls~~----~~~~~~~dv 463 (714)
+..+|+++++++.+|+.|+||||++|+|.+|..++++| ++++..++||||+||+|||+||+.+++. +.++++.|+
T Consensus 321 v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~ 400 (620)
T KOG0101|consen 321 VEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDV 400 (620)
T ss_pred HHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeec
Confidence 99999999999999999999999999999999999999 6888999999999999999999999986 678999999
Q ss_pred ccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEE
Q 005099 464 TPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEV 543 (714)
Q Consensus 464 ~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v 543 (714)
.|+++||++.++.|.++|++|+.+|++++++|+++.|+|+.+.|.||+||+.++++|.++|.|+|.++||+|+|+++|+|
T Consensus 401 ~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Iev 480 (620)
T KOG0101|consen 401 APLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 480 (620)
T ss_pred ccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCceEEEEEEEcCCCceeeeEEccC-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 005099 544 KFDIDANGILSVSAVDKGTGKKQDITITGA-STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKEL 622 (714)
Q Consensus 544 ~f~id~~gil~v~a~~~~t~~~~~i~i~~~-~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~ 622 (714)
+|.+|.||||.|++.|+.|||...++|++. +.||+++|++|..+++.+..+|...+++..++|+||+|+|+++..+++-
T Consensus 481 tfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~ 560 (620)
T KOG0101|consen 481 TFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDE 560 (620)
T ss_pred EEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhh
Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999999999985
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005099 623 GDKVPAEVKGKVEGKLKELKDAIAEG---STQAMKDTMAALNQEVMQLGQSLYNQ 674 (714)
Q Consensus 623 ~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~i~~~~~~~ 674 (714)
.+.++++++.++.+.|++...||+.+ ..++|++|.++|+..|.||+.++|+.
T Consensus 561 ~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 561 KGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred ccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 58999999999999999999999965 49999999999999999999999995
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-103 Score=899.03 Aligned_cols=584 Identities=41% Similarity=0.680 Sum_probs=551.9
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhhhh
Q 005099 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDEE 157 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~~~ 157 (714)
+||||||||||+||++.+|++++++|..|.+.+||+|+|.++++++||..|+.+...+|.++++++||+||+.+.+++.
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 5899999999999999999999999999999999999999877999999999999999999999999999999888765
Q ss_pred hccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCC
Q 005099 158 SKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGL 237 (714)
Q Consensus 158 ~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl 237 (714)
.+.+||.++...++.+.+... ...++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 157 (599)
T TIGR01991 80 FSILPYRFVDGPGEMVRLRTV--QGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGL 157 (599)
T ss_pred cccCCEEEEEcCCCceEEEeC--CCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 677999998888888877765 347999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcccccc
Q 005099 238 DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDE 317 (714)
Q Consensus 238 ~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~ 317 (714)
++++||+||+|||++|+.+...+.++|||||||||||+|++++.++.++|+++.|+.++||++||+.|++|+.++++
T Consensus 158 ~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~--- 234 (599)
T TIGR01991 158 NVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLG--- 234 (599)
T ss_pred CceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhC---
Confidence 99999999999999999887678899999999999999999999999999999999999999999999999997753
Q ss_pred CCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 005099 318 GIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAK 397 (714)
Q Consensus 318 ~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~ 397 (714)
.+...+++.+.+|+.+||++|+.||.+.++.+.++. .+ .++.++|||++|+++|+|+++++.++|+++|++++
T Consensus 235 -~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g----~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~ 307 (599)
T TIGR01991 235 -ISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DG----KDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAG 307 (599)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CC----cEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444567889999999999999999999888888764 22 68899999999999999999999999999999999
Q ss_pred CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC--CCCcEEEeeccCCcceeeeCC
Q 005099 398 LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD--VSDIVLLDVTPLSLGLETLGG 475 (714)
Q Consensus 398 ~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~--~~~~~~~dv~~~slgi~~~~~ 475 (714)
+.+.+|+.|+||||+||||+|+++|+++|+..+..++||++|||+|||++|+.+++. .+++.+.|++|++||+++.+|
T Consensus 308 ~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi~~~~g 387 (599)
T TIGR01991 308 LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGG 387 (599)
T ss_pred CChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEEEecCC
Confidence 999999999999999999999999999999888889999999999999999999876 358999999999999999999
Q ss_pred eeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceEEE
Q 005099 476 VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555 (714)
Q Consensus 476 ~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil~v 555 (714)
.+.+|||||++||+++++.|++..|+|+.+.|.|||||+..+.+|..||+|.|.++|+.|.|.++|+|+|++|.||+|+|
T Consensus 388 ~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V 467 (599)
T TIGR01991 388 LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467 (599)
T ss_pred EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHH
Q 005099 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVE 635 (714)
Q Consensus 556 ~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~ 635 (714)
++.++.||++..+.|.....|++++++++++++++++.+|+..++..+++|++|+|+|.+++.+.++.+.+++++++++.
T Consensus 468 ~a~~~~t~~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (599)
T TIGR01991 468 SAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAID 547 (599)
T ss_pred EEEECCCCcEEEEecccccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99999999999999987778999999999999999999999999999999999999999999998766789999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005099 636 GKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 674 (714)
Q Consensus 636 ~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~~ 674 (714)
..++++++||+++|.+.++++.++|++.+.+++.+.++.
T Consensus 548 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 586 (599)
T TIGR01991 548 AAMEALQKALQGDDADAIKAAIEALEEATDNFAARRMDR 586 (599)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988874
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-102 Score=891.57 Aligned_cols=583 Identities=40% Similarity=0.677 Sum_probs=548.8
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
...+||||||||||+||++.+|++++++|..|++.+||+|+|.++ .++||..|+.+...+|.++++++||+||+.+.++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 96 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFMGRSLADI 96 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh
Confidence 347999999999999999999999999999999999999999887 5999999999999999999999999999999888
Q ss_pred hhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHH
Q 005099 155 DEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRI 234 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~ 234 (714)
+.....+||.+....+|.+.+... ...++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||++
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 174 (616)
T PRK05183 97 QQRYPHLPYQFVASENGMPLIRTA--QGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARL 174 (616)
T ss_pred hhhhhcCCeEEEecCCCceEEEec--CCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHH
Confidence 777788999998877887777764 347899999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccc
Q 005099 235 AGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~ 314 (714)
|||++++||+||+|||++|+.+...+.++||||+||||||+|++++.++.++|+++.|+.++||++||+.|++|+.++|+
T Consensus 175 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~ 254 (616)
T PRK05183 175 AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG 254 (616)
T ss_pred cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999887668899999999999999999999999999999999999999999999999998875
Q ss_pred cccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLR 394 (714)
Q Consensus 315 ~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~ 394 (714)
.. ...+++++.+|+.+||++|+.||.+.++.+.++.+ ...|||++|+++|+|+++++.++++++|+
T Consensus 255 ~~----~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~----------~~~itr~efe~l~~~l~~~~~~~i~~~L~ 320 (616)
T PRK05183 255 LS----PRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW----------QGEITREQFNALIAPLVKRTLLACRRALR 320 (616)
T ss_pred CC----cCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC----------CCeEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33578899999999999999999998888877421 22499999999999999999999999999
Q ss_pred HcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC--CCCcEEEeeccCCcceee
Q 005099 395 DAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD--VSDIVLLDVTPLSLGLET 472 (714)
Q Consensus 395 ~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~--~~~~~~~dv~~~slgi~~ 472 (714)
++++.+.+|+.|+||||+||||+|++.|+++||..+..++||+++||+|||++|+++++. .+++.+.|++|++||+++
T Consensus 321 ~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi~~ 400 (616)
T PRK05183 321 DAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLET 400 (616)
T ss_pred HcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeecccccccee
Confidence 999999999999999999999999999999999888889999999999999999999886 468999999999999999
Q ss_pred eCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCce
Q 005099 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552 (714)
Q Consensus 473 ~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gi 552 (714)
.+|.+.+|||||++||+++++.|++..|+|+.+.|+|||||+..+.+|..||+|.|.++|+.|.|.++|+|+|++|.||+
T Consensus 401 ~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gi 480 (616)
T PRK05183 401 MGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGL 480 (616)
T ss_pred cCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHH
Q 005099 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKG 632 (714)
Q Consensus 553 l~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~ 632 (714)
|+|++.++.+|++.++.|.....|++++++++++++++++.+|+..+++.+++|++|.++|.+++.+++..+.+++++++
T Consensus 481 l~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 560 (616)
T PRK05183 481 LSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERA 560 (616)
T ss_pred EEEEEEEcCCCcEEEecccccccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 99999999999999999987778999999999999999999999999999999999999999999997666789999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005099 633 KVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 674 (714)
Q Consensus 633 ~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~~ 674 (714)
++.+.++++++||+.+|.+.+++++++|++.+.++..+.|+.
T Consensus 561 ~~~~~l~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 602 (616)
T PRK05183 561 AIDAAMAALREVAQGDDADAIEAAIKALDKATQEFAARRMDR 602 (616)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988873
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-97 Score=846.33 Aligned_cols=553 Identities=34% Similarity=0.543 Sum_probs=498.4
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
+..+||||||||||+||++.+|++++++|..|++.+||+|+|.++ .++||..| +++++||+||+.++++
T Consensus 18 ~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~-~~~vG~~A----------ti~~~KrliG~~~~~~ 86 (595)
T PRK01433 18 RQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSN-NFTIGNNK----------GLRSIKRLFGKTLKEI 86 (595)
T ss_pred CceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCC-CEEECchh----------hHHHHHHHhCCCchhh
Confidence 346999999999999999999999999999999999999999876 69999977 7999999999998753
Q ss_pred hhhh--ccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 155 DEES--KQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 155 ~~~~--~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
.... ............+.+.+... ++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 87 ~~~~~~~~~~k~~~~~~~~~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa 164 (595)
T PRK01433 87 LNTPALFSLVKDYLDVNSSELKLNFA--NKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAA 164 (595)
T ss_pred ccchhhHhhhhheeecCCCeeEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 2110 00011112222334445443 6789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
++||++++++|+||+|||++|+.+.....++||||+||||||+|++++.++.++|+++.|+.++||+|||..|++|+..+
T Consensus 165 ~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 165 KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred HHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHh
Confidence 99999999999999999999998876678899999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETS 392 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~ 392 (714)
|.... +.. .++.||++|+.||.+..... ..++|||++||++|+|+++++..+++++
T Consensus 245 ~~~~~------~~~----~~~~~ekaK~~LS~~~~~~~--------------~~~~itr~efe~l~~~l~~~~~~~i~~~ 300 (595)
T PRK01433 245 FDLPN------SID----TLQLAKKAKETLTYKDSFNN--------------DNISINKQTLEQLILPLVERTINIAQEC 300 (595)
T ss_pred cCCCC------CHH----HHHHHHHHHHhcCCCccccc--------------ceEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 75322 222 23469999999998764211 1689999999999999999999999999
Q ss_pred HHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceee
Q 005099 393 LRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLET 472 (714)
Q Consensus 393 L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~ 472 (714)
|++++ +.+|+.|+||||+||||+|+++|+++||.++..++||+++||+|||++|+.+++...++++.|++|++||+++
T Consensus 301 L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgi~~ 378 (595)
T PRK01433 301 LEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMEL 378 (595)
T ss_pred HhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCccceEEEEecccceEEEe
Confidence 99998 5789999999999999999999999999988899999999999999999999988788999999999999999
Q ss_pred eCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCce
Q 005099 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552 (714)
Q Consensus 473 ~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gi 552 (714)
.+|.+.+|||||++||+++++.|++..|+|+.+.|.|||||+....+|..||+|.|.++|+.|+|.++|+|+|++|.||+
T Consensus 379 ~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gi 458 (595)
T PRK01433 379 YGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458 (595)
T ss_pred cCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHH
Q 005099 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKG 632 (714)
Q Consensus 553 l~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~ 632 (714)
|+|++.++.||++.++.|..+..|+++|+++|+++++++..+|+..++..+++|++|++++.+++.++++.+.+++++++
T Consensus 459 l~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 538 (595)
T PRK01433 459 LSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSESEIS 538 (595)
T ss_pred EEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 99999999999999999987777999999999999999999999999999999999999999999998777778999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 005099 633 KVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQ 666 (714)
Q Consensus 633 ~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~ 666 (714)
++.+.++++++||+.+|...+++++++|+..+.+
T Consensus 539 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 539 IINSLLDNIKEAVHARDIILINNSIKEFKSKIKK 572 (595)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877777777666665555
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-96 Score=834.64 Aligned_cols=573 Identities=61% Similarity=0.926 Sum_probs=548.2
Q ss_pred CCeEEEEEcCccceEEEEEECC-eeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~ 153 (714)
+..+|||||||||||||+++++ .+.++.|..|.|.+||+|+|.+++++++|..|+.++..||.++++.+||++|+..
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~-- 81 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGS-- 81 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCC--
Confidence 4579999999999999999988 7999999999999999999998878999999999999999999999999999872
Q ss_pred hhhhhccceeEEEEcCCC-cEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 154 VDEESKQVSYRVVRDENG-NVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 154 v~~~~~~~~~~v~~~~~g-~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
.+ .+.+... ++.++|++|++++|++|+++++.+++..++++|||||+||++.||+++++|+
T Consensus 82 ----------------~~~~~~~~~~--~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~ 143 (579)
T COG0443 82 ----------------NGLKISVEVD--GKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAA 143 (579)
T ss_pred ----------------CCCcceeeeC--CeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHH
Confidence 11 1233333 4789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
++|||+++++++||+|||++|+.+...+.+|||||+||||||+|++++.++.++|+++.|+.+|||+|||.+|.+|+..+
T Consensus 144 ~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~ 223 (579)
T COG0443 144 RIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVME 223 (579)
T ss_pred HHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETS 392 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~ 392 (714)
|+.++++++..++.+++||+.+||++|+.||+..++.+.++++..+ .++..+|||++||+++.+++.++..++.++
T Consensus 224 f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~~~a 299 (579)
T COG0443 224 FKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPVEQA 299 (579)
T ss_pred hhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887655 678899999999999999999999999999
Q ss_pred HHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceee
Q 005099 393 LRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLET 472 (714)
Q Consensus 393 L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~ 472 (714)
|.++++++.+|+.|+||||++|||.|++.++++|++++...+||+++||.|||++|+.+++..+++++.|++|+++|+++
T Consensus 300 l~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgie~ 379 (579)
T COG0443 300 LKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIET 379 (579)
T ss_pred HHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred eCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCce
Q 005099 473 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 552 (714)
Q Consensus 473 ~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gi 552 (714)
.++.+..+|++|+.+|.++...|++..|+|+.+.+.++|||+.+..+|..+|.|.+.++||.|+|.++|+|+|.+|.||+
T Consensus 380 ~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi 459 (579)
T COG0443 380 LGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGI 459 (579)
T ss_pred CcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHH
Q 005099 553 LSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKG 632 (714)
Q Consensus 553 l~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~ 632 (714)
+.|++.++.+|++..++|.....|+++++++|+++++.+.+.|+..++..+.+|+++.+++.++..|.+.. .+++++++
T Consensus 460 ~~v~a~~~~~~k~~~i~i~~~~~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 538 (579)
T COG0443 460 LNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKE 538 (579)
T ss_pred eEeeeecccCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCCHHHHH
Confidence 99999999999999999999955999999999999999999999999999999999999999999998866 89999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 633 KVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 633 ~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
++...+.++++||+.+ .++++.+.++|+....++..+.|+
T Consensus 539 ~~~~~~~~~~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 539 KIEEAITDLEEALEGE-KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999984 899999999999999999998876
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-94 Score=834.81 Aligned_cols=589 Identities=47% Similarity=0.783 Sum_probs=535.9
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh--hh
Q 005099 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE--VD 155 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~--v~ 155 (714)
|||||||||||+||++.+|.++++.|..|+|++||+|+|.++ ++++|..|......+|.++++++|||||+.+++ ++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999999988 999999999999999999999999999998875 88
Q ss_pred hhhccceeEEEEcCCCcEEEEeC--CCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHH
Q 005099 156 EESKQVSYRVVRDENGNVKLECP--AIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGR 233 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~--~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~ 233 (714)
.+.+.+||.+..+++|...+.+. +....++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 88899999999888887665544 4445899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeEEechhHHHHHHcccccCC-CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 234 IAGLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~~~~-~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
.|||++++||+||+|||++|+..... +.++|||||||||+|+|++++.++.++++++.++..+||.+||+.|++|+.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999887655 78999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCC--CceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSS--LTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVE 390 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~--~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~ 390 (714)
|+.+++.++..+++.+.+|+.+||++|+.||. +.+..+.++.+.++ + .++.++|||++|+++++|+++++.++|+
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~--~-~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDD--G-EDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETT--T-EEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--c-cccccccccceecccccccccccccccc
Confidence 99988889888999999999999999999999 56666677666552 1 7899999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC--CCCCcEEEeeccCCc
Q 005099 391 TSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG--DVSDIVLLDVTPLSL 468 (714)
Q Consensus 391 ~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~--~~~~~~~~dv~~~sl 468 (714)
++|++++++..+|+.|+||||+||+|+|++.|++.|+..+..++||++|||+|||++|+.+++ ..+++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999988889999999999999999999998 478899999999999
Q ss_pred ceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEec
Q 005099 469 GLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 548 (714)
Q Consensus 469 gi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id 548 (714)
||++.++.+.+++++|+++|.+.+..|++..++|+.+.|.||||++....+|..||++.|.++++.+.|.++|+|+|++|
T Consensus 397 ~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld 476 (602)
T PF00012_consen 397 GIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELD 476 (602)
T ss_dssp EEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeee
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCH
Q 005099 549 ANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPA 628 (714)
Q Consensus 549 ~~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~ 628 (714)
.+|+|+|++.+..++++..+.+.....+++++++++.++++++..+|+.+++..+++|++|+++|++|+.+++..+.+++
T Consensus 477 ~~Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~ 556 (602)
T PF00012_consen 477 ENGILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEEDKDFVSE 556 (602)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTH
T ss_pred eeeehhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhhhccCCH
Confidence 99999999999999999989998886699999999999999999999999999999999999999999999877777887
Q ss_pred HHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 629 EVKGKVEGKLKELKDAIAE----GSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 629 ~~~~~~~~~l~~~~~wl~~----~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
+++ .+.+++..+||++ .+.++|++++++|++..++|..|+|+
T Consensus 557 ~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 557 EEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777 5666666666664 46999999999999999999999885
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-86 Score=719.40 Aligned_cols=579 Identities=31% Similarity=0.525 Sum_probs=531.2
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh--h
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE--V 154 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~--v 154 (714)
+|+|||||..+|.+|+.+.+..++|.|+.++|.||++|+|.+. .|++|.+|+.+...|+.|++..+||++|+.|+| +
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K-~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPK-NRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccc-cceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 3999999999999999999999999999999999999999988 899999999999999999999999999999996 8
Q ss_pred hhhhccceeEEEEcCCCcEE--EEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 155 DEESKQVSYRVVRDENGNVK--LECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~--v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
|.+.+.+|+.++.+.+|.+. +++-++.+.|+|++|++|+|.+|++.+++.+..++.+|||+||+||++.||+++.+||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999999999998655 5566788899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCC-------CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHH
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKN-------NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRI 305 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~-------~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l 305 (714)
++|||++++|++|.+|+|++|+..+.+ +.+|+++|+|+.++.+|++.+..|.+.++++.+|.++||++||+.|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 999999999999999999999987543 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHH
Q 005099 306 VDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRL 385 (714)
Q Consensus 306 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i 385 (714)
.+|++.+|+.+|++++..+++++.||+.+||++|+.||++...+.+|++++++ .+.+..|+|++||++|.|+++++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d----~dvs~~i~ReEfEel~~plL~rv 316 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMND----KDVSSKIKREEFEELSAPLLERV 316 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeec----chhhhhccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999988 78899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC--CCCcEEEee
Q 005099 386 KTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD--VSDIVLLDV 463 (714)
Q Consensus 386 ~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~--~~~~~~~dv 463 (714)
..++.++|+++++..+||+.|.+|||+||||.|++.|.++||+++.+++|.++|||+|||+++|++|+. ++++-+.|+
T Consensus 317 ~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di 396 (727)
T KOG0103|consen 317 EVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDI 396 (727)
T ss_pred hHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999976 788999999
Q ss_pred ccCCcceeee----C-CeeEEEEeCCCccCCCccceeeecccCCcceeeeeeccc-ccccccCceeeEEEEeCCCCCCCC
Q 005099 464 TPLSLGLETL----G-GVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGE-REFVRDNKSLGSFRLDGIPPAPRG 537 (714)
Q Consensus 464 ~~~slgi~~~----~-~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge-~~~~~~n~~lg~~~l~~~~~~~~g 537 (714)
.||++.+.+. + +....+||+|.++|.++..+|.... .|.+.++++. ...+.....|++|.+.++.+...|
T Consensus 397 ~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~g 472 (727)
T KOG0103|consen 397 VPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDG 472 (727)
T ss_pred cceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCccc
Confidence 9999988864 3 4557899999999999998888764 4788888776 444545568999999999887774
Q ss_pred -CCeeEEEEEecCCceEEEEEEE------c----------------------CCC----ceeeeEEccC--CCCChHHHH
Q 005099 538 -VPQIEVKFDIDANGILSVSAVD------K----------------------GTG----KKQDITITGA--STLPNDEVQ 582 (714)
Q Consensus 538 -~~~i~v~f~id~~gil~v~a~~------~----------------------~t~----~~~~i~i~~~--~~l~~~ei~ 582 (714)
..+++|...++.+||++|...- . ..+ +...+.+... ++|+.++++
T Consensus 473 e~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~ 552 (727)
T KOG0103|consen 473 EFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELE 552 (727)
T ss_pred cccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHH
Confidence 6789999999999999986431 0 011 1223444433 679999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Q 005099 583 RMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE-LGDKVPAEVKGKVEGKLKELKDAIAEG----STQAMKDTM 657 (714)
Q Consensus 583 ~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~~~ 657 (714)
..++++-+|..+|+...++.++||.||+|||++|++|.+ |.++++++++++|...|+++++|||++ ..+.|..|+
T Consensus 553 ~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl 632 (727)
T KOG0103|consen 553 LYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKL 632 (727)
T ss_pred HHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 999999999999999999999999999999999999998 889999999999999999999999975 378888888
Q ss_pred HHHHHHH
Q 005099 658 AALNQEV 664 (714)
Q Consensus 658 ~~l~~~~ 664 (714)
.+|++..
T Consensus 633 ~elk~~g 639 (727)
T KOG0103|consen 633 EELKKLG 639 (727)
T ss_pred HHHHhhh
Confidence 8888776
|
|
| >KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-75 Score=630.35 Aligned_cols=584 Identities=28% Similarity=0.465 Sum_probs=508.7
Q ss_pred CCeEEEEEcCccceEEEEEECCee-EEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKP-TIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~-~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~ 153 (714)
...|++|||||.|++|+++++|.| +|+.|..++|++|++|+|.++ +|++|.+|.....++|++++.+++.|+|+...+
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~-eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~ 99 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGG-ERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD 99 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCC-ceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence 567999999999999999999977 899999999999999999866 999999999999999999999999999999886
Q ss_pred --hhhhhcccee-EEEEcC-CCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHH
Q 005099 154 --VDEESKQVSY-RVVRDE-NGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATK 229 (714)
Q Consensus 154 --v~~~~~~~~~-~v~~~~-~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~ 229 (714)
++.+.+++|| .++.++ .+.+.+.+.+ ...|++|++++|+|.+.+..|+.+...+|+++|||||.||++.||+++.
T Consensus 100 ~~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all 178 (902)
T KOG0104|consen 100 PTVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALL 178 (902)
T ss_pred cHHHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHH
Confidence 6667777665 566664 5567776653 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeEEechhHHHHHHcccccCC-----CceEEEEEeCCcceEEEEEEEc----------CceEEEEEecCCC
Q 005099 230 DAGRIAGLDVLRIINEPTAASLAYGFEKKN-----NETILVFDLGGGTFDVSVLEVG----------DGVFEVLSTSGDT 294 (714)
Q Consensus 230 ~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~-----~~~vLVvD~GgGT~Dvsv~~~~----------~~~~~vl~~~gd~ 294 (714)
+|+++||++++.||||-+|||+.|+..+.. ++++||||||+|.+.++++.+. ...+++++.++|.
T Consensus 179 ~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 179 QAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 999999999999999999999999998643 6899999999999999999874 1479999999999
Q ss_pred CCChhHHHHHHHHHHHhccccccC--CCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHH
Q 005099 295 HLGGDDFDKRIVDWLASNFKRDEG--IDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRV 372 (714)
Q Consensus 295 ~lGG~d~D~~l~~~l~~~~~~~~~--~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~ 372 (714)
.|||..|..+|.+||.+.|.+.++ .++..+||++.+|.++|+++|..||.|..+.+.|+.+.++ .||..+|||+
T Consensus 259 tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~dd----iDFr~kvTRe 334 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDD----IDFRLKVTRE 334 (902)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhc----cccccceeHH
Confidence 999999999999999999988765 4677899999999999999999999999999999999988 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCC-CCCcCCCChhHHHhHHHHHHhHh
Q 005099 373 KFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR-EPNVTVNPDEVVALGAAVQAGVL 451 (714)
Q Consensus 373 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~-~~~~~~np~eaVA~GAa~~aa~l 451 (714)
+||++|+++..++..+|+++|..++++.++|+.|+|.||+||+|.||+.|.++.|. ++...+|.|||+++||+++||.|
T Consensus 335 ~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~L 414 (902)
T KOG0104|consen 335 EFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHL 414 (902)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999964 78899999999999999999999
Q ss_pred hCC--CCCcEEEeeccCCcceeeeCC--------eeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCc
Q 005099 452 AGD--VSDIVLLDVTPLSLGLETLGG--------VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNK 521 (714)
Q Consensus 452 s~~--~~~~~~~dv~~~slgi~~~~~--------~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~ 521 (714)
|.. ++++.+.|.++|+|-++..+. ....+|+++.++|.++..+|+.+.|+ +.+.+-.+.-. .
T Consensus 415 SksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~ 486 (902)
T KOG0104|consen 415 SKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----Q 486 (902)
T ss_pred cccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----c
Confidence 987 789999999999998876543 12348999999999998888776653 44444333211 2
Q ss_pred eeeEEEEeCCCCC----CC---CCCeeEEEEEecCCceEEEEEEEcC---------------------C-----------
Q 005099 522 SLGSFRLDGIPPA----PR---GVPQIEVKFDIDANGILSVSAVDKG---------------------T----------- 562 (714)
Q Consensus 522 ~lg~~~l~~~~~~----~~---g~~~i~v~f~id~~gil~v~a~~~~---------------------t----------- 562 (714)
.+-.++|.++... +. ....|+++|.+|.+|++.|+..+.. +
T Consensus 487 nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~ 566 (902)
T KOG0104|consen 487 NLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSV 566 (902)
T ss_pred CccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhcccccccccccccccc
Confidence 3447777766543 11 1356999999999999998754200 0
Q ss_pred ------------Cc--e------------------------------------eeeEEccC----CCCChHHHHHHHHHH
Q 005099 563 ------------GK--K------------------------------------QDITITGA----STLPNDEVQRMVQEA 588 (714)
Q Consensus 563 ------------~~--~------------------------------------~~i~i~~~----~~l~~~ei~~~~~~~ 588 (714)
++ + ..+.|... ..|++..++.....+
T Consensus 567 ~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl 646 (902)
T KOG0104|consen 567 QEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKL 646 (902)
T ss_pred chhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHH
Confidence 00 0 01333322 468899999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHH
Q 005099 589 ERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE--LGDKVPAEVKGKVEGKLKELKDAIAEG----STQAMKDTMAALNQ 662 (714)
Q Consensus 589 ~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~~~~~l~~ 662 (714)
+.+.+.|+.+.++.++.|.||.|+|.++++|.+ |.++.+++|+.+|+..+..+.+||+++ -...+.+++.+|++
T Consensus 647 ~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~ 726 (902)
T KOG0104|consen 647 EDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKK 726 (902)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999987 888999999999999999999999975 38899999999999
Q ss_pred HHHHHHHHHh
Q 005099 663 EVMQLGQSLY 672 (714)
Q Consensus 663 ~~~~i~~~~~ 672 (714)
++..+..|..
T Consensus 727 l~~~~~~R~e 736 (902)
T KOG0104|consen 727 LETSKNFREE 736 (902)
T ss_pred HHhhhhHHHH
Confidence 9988876644
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-57 Score=499.95 Aligned_cols=339 Identities=29% Similarity=0.425 Sum_probs=293.3
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEe---------------------------------------
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT--------------------------------------- 117 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~--------------------------------------- 117 (714)
+++|||||||||+||++++|++++++++.|.+.+||+|+|.
T Consensus 1 ~~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 1 MFIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred CeEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 37999999999999999999999999999999999999995
Q ss_pred -cCCCEEecHHHHHhhhhCCCch--HHHHhHhhCCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHH
Q 005099 118 -KNGDRLVGQIAKRQAVVNPENT--FFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVL 194 (714)
Q Consensus 118 -~~~~~~vG~~A~~~~~~~p~~~--i~~~KrllG~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L 194 (714)
++++.++|..|+.+...+|.++ +.++|++||... |. ......++++++++|
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~-----------~~---------------~~~~~~~e~l~a~iL 134 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASG-----------LK---------------PQQVALFEDLVCAMM 134 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCC-----------CC---------------ccceeCHHHHHHHHH
Confidence 3457889999999999999998 779999999752 10 012234899999999
Q ss_pred HHHHHHHHhhcCCCcCeEEEEecCCCC-----HHHHHH---HHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEE
Q 005099 195 RKLVDDASKFLNDSVTKAVVTVPAYFN-----DSQRTA---TKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVF 266 (714)
Q Consensus 195 ~~l~~~a~~~~~~~v~~~VITVPa~f~-----~~qR~~---l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVv 266 (714)
++|++.++.+++.++.++|||||++|+ +.||++ +++||+.||+++++|++||+|||++|+.....+..+|||
T Consensus 135 ~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~ 214 (450)
T PRK11678 135 LHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVV 214 (450)
T ss_pred HHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEE
Confidence 999999999999999999999999999 788776 699999999999999999999999999877678999999
Q ss_pred EeCCcceEEEEEEEcCc-------eEEEEEecCCCCCChhHHHHHHH-HHHHhcccc----ccCCCc-------------
Q 005099 267 DLGGGTFDVSVLEVGDG-------VFEVLSTSGDTHLGGDDFDKRIV-DWLASNFKR----DEGIDL------------- 321 (714)
Q Consensus 267 D~GgGT~Dvsv~~~~~~-------~~~vl~~~gd~~lGG~d~D~~l~-~~l~~~~~~----~~~~~~------------- 321 (714)
||||||||+|++++.++ ..+++++.| .++||+|||+.|+ +++...|+. +.+.++
T Consensus 215 D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~ 293 (450)
T PRK11678 215 DIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAIND 293 (450)
T ss_pred EeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhc
Confidence 99999999999999654 468999998 5899999999998 677777642 111100
Q ss_pred ----------------------hhcHHHH------------HHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEE
Q 005099 322 ----------------------LKDKQAL------------QRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDT 367 (714)
Q Consensus 322 ----------------------~~~~~~~------------~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~ 367 (714)
..+++.+ .+|+.+||++|+.||.+.++.+.++.+. .++..
T Consensus 294 i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~------~~~~~ 367 (450)
T PRK11678 294 VPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS------DGLAT 367 (450)
T ss_pred cchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC------CCcce
Confidence 0123333 3688999999999999999999887653 34678
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHH
Q 005099 368 TLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQ 447 (714)
Q Consensus 368 ~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~ 447 (714)
+|||++|+++++++++++.++|+++|+++++. ++.|+||||+|+||.|++.|++.||.......+|.++||.|+|++
T Consensus 368 ~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~ 444 (450)
T PRK11678 368 EISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARW 444 (450)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHH
Confidence 99999999999999999999999999999975 579999999999999999999999887777889999999999999
Q ss_pred HhHh
Q 005099 448 AGVL 451 (714)
Q Consensus 448 aa~l 451 (714)
|+.+
T Consensus 445 a~~~ 448 (450)
T PRK11678 445 AQVV 448 (450)
T ss_pred HHhh
Confidence 9763
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=355.01 Aligned_cols=310 Identities=26% Similarity=0.381 Sum_probs=241.0
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC-CCE-EecHHHHHhhhhCCCchHHHHhHhhCCCchhhhh
Q 005099 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN-GDR-LVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDE 156 (714)
Q Consensus 79 IGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~~-~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~~ 156 (714)
+||||||+||+|+.. ++..++. +||+|+|..+ +.. .+|..|+......|.+... .+
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~------~~------- 63 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA------IR------- 63 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE------Ec-------
Confidence 899999999999876 4555554 6999999964 234 6899997766555554321 00
Q ss_pred hhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 005099 157 ESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAG 236 (714)
Q Consensus 157 ~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AG 236 (714)
| -....+...++...+|+++.+.+..........+|||||++|++.||+++++|++.||
T Consensus 64 -----p----------------i~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag 122 (336)
T PRK13928 64 -----P----------------LRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAG 122 (336)
T ss_pred -----c----------------CCCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 1 0112233446677777887765543222333479999999999999999999999999
Q ss_pred CCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccc
Q 005099 237 LDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316 (714)
Q Consensus 237 l~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~ 316 (714)
++++.+++||+|||++|+.+...+..++|||+||||||+++++..... ..++..+||++||+.|++++..+|+..
T Consensus 123 ~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~~~~~~ 197 (336)
T PRK13928 123 AKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRKKYKLL 197 (336)
T ss_pred CCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHHHhchh
Confidence 999999999999999999876667789999999999999999976422 246789999999999999999876532
Q ss_pred cCCCchhcHHHHHHHHHHHHHhhhhcCCCce----eeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 005099 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQ----TNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETS 392 (714)
Q Consensus 317 ~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~----~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~ 392 (714)
.+ ...||++|+.++.... ..+.+.. .+........++|+|++|++++.++++++.+.|+++
T Consensus 198 ~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g--~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~ 262 (336)
T PRK13928 198 IG-------------ERTAEEIKIKIGTAFPGAREEEMEIRG--RDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSV 262 (336)
T ss_pred cC-------------HHHHHHHHHHhcccccccCCcEEEEec--ccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 3579999999875421 2222211 110111456789999999999999999999999999
Q ss_pred HHHcC--CCCCCCC-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHh
Q 005099 393 LRDAK--LSFKDLD-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVL 451 (714)
Q Consensus 393 L~~a~--~~~~~i~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~l 451 (714)
|+.++ +..+.++ .|+|+||+|++|.|+++|++.|+.++....||+++||+|||+++..+
T Consensus 263 l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 263 LERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 99986 4456677 79999999999999999999999998889999999999999998764
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=346.47 Aligned_cols=309 Identities=25% Similarity=0.344 Sum_probs=245.8
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCC--EEecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD--RLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~--~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
..+||||||+|+++ |.+++.. +.| .||+|+|+.++. ..+|..|+.+..++|.++... + +
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----p---- 65 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----P---- 65 (335)
T ss_pred CeEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----c----
Confidence 36999999999985 5566554 444 599999986544 579999998888888765321 1 1
Q ss_pred hhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcC--eEEEEecCCCCHHHHHHHHHHH
Q 005099 155 DEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVT--KAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~--~~VITVPa~f~~~qR~~l~~Aa 232 (714)
-....+...++++.+|++++..++..++..+. .+|||||++|++.||+++.+|+
T Consensus 66 ------------------------i~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~ 121 (335)
T PRK13929 66 ------------------------MKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAV 121 (335)
T ss_pred ------------------------CCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 01112233478899999999998877776554 7999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
+.||++++.+++||+|||++|+.....+..++|+|+||||+|++++.+++.. ..++..+||++||+.|.+++...
T Consensus 122 ~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~l~~~ 196 (335)
T PRK13929 122 KNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSFVRKK 196 (335)
T ss_pred HHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876667889999999999999999876432 24567899999999999999876
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc----eeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT----QTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTP 388 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~----~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~ 388 (714)
|+...+ ...||++|+.++... ...+.+... +........+++++++|+++|.+++.++.+.
T Consensus 197 ~~~~~~-------------~~~AE~iK~~l~~~~~~~~~~~~~v~g~--~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~ 261 (335)
T PRK13929 197 YNLLIG-------------ERTAEQVKMEIGYALIEHEPETMEVRGR--DLVTGLPKTITLESKEIQGAMRESLLHILEA 261 (335)
T ss_pred hCcCcC-------------HHHHHHHHHHHcCCCCCCCCceEEEeCC--ccCCCCCeEEEEcHHHHHHHHHHHHHHHHHH
Confidence 542211 257999999998642 112222110 1111134678999999999999999999999
Q ss_pred HHHHHHHcCCC--CCCCC-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHH
Q 005099 389 VETSLRDAKLS--FKDLD-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 389 i~~~L~~a~~~--~~~i~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~a 448 (714)
|.++|+++... .+.++ .|+|+||+|++|.++++|++.|+.++....||+++||+||+..-
T Consensus 262 i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 262 IRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 99999997533 35677 69999999999999999999999999888999999999999763
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=329.62 Aligned_cols=309 Identities=26% Similarity=0.393 Sum_probs=229.0
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC----CC--EEecHHHHHhhhhCCCchHHHHhHhhCCCch
Q 005099 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN----GD--RLVGQIAKRQAVVNPENTFFSVKRFIGRKMV 152 (714)
Q Consensus 79 IGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~----~~--~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~ 152 (714)
|||||||+||++++...| .++ ..||+|+|.++ .. ..+|..|+....+.|.++. +++-+
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi----- 68 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPM----- 68 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecC-----
Confidence 999999999999875433 344 27999999854 22 5699999776555555431 11111
Q ss_pred hhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 153 EVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 153 ~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
.+| .+...+.+..+++++.....+..+.....+|+|||++|+..||+++++|+
T Consensus 69 ----------------~~G-----------~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~ 121 (333)
T TIGR00904 69 ----------------KDG-----------VIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESA 121 (333)
T ss_pred ----------------CCC-----------EEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 111 11122334444555544433222222238999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
+.||++++.+++||+|||++|+.....+..++|||+||||||+++++.++..+ .++.++||++||+.|++++..+
T Consensus 122 ~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~-----~~~~~lGG~did~~l~~~l~~~ 196 (333)
T TIGR00904 122 LSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVV-----SRSIRVGGDEFDEAIINYIRRT 196 (333)
T ss_pred HHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEe-----cCCccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999998766677899999999999999998765332 4567899999999999999876
Q ss_pred cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce-----eeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHH
Q 005099 313 FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ-----TNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKT 387 (714)
Q Consensus 313 ~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~-----~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~ 387 (714)
+..... ++.||++|+.++.... ..+.+.. .+........+.|++++|.+++.+.++++.+
T Consensus 197 ~~~~~~-------------~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~ 261 (333)
T TIGR00904 197 YNLLIG-------------EQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQEPVNQIVE 261 (333)
T ss_pred hcccCC-------------HHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHHHHHHHHHH
Confidence 632211 3579999999976422 1222211 0100112345789999999999999999999
Q ss_pred HHHHHHHHcCCCC-CCC-C-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 388 PVETSLRDAKLSF-KDL-D-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 388 ~i~~~L~~a~~~~-~~i-~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
.+.+.|+.+.... .++ + .|+|+||+|++|.+++.|++.|+.++....||+++||.||++++..
T Consensus 262 ~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 262 AVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 9999999976432 233 3 7999999999999999999999999999999999999999998654
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=330.03 Aligned_cols=308 Identities=26% Similarity=0.402 Sum_probs=231.4
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC-CC-EEecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN-GD-RLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~-~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
..|||||||++++++.. |+..++ .+||+|+|.++ +. .++|+.|+.+...+|.++.. .
T Consensus 6 ~~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~--~---------- 64 (334)
T PRK13927 6 NDLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA--I---------- 64 (334)
T ss_pred ceeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE--E----------
Confidence 46999999999998543 333333 27999999865 33 47999998776666654310 0
Q ss_pred hhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHH
Q 005099 155 DEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRI 234 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~ 234 (714)
+|+ .+| .+.-.+.+..+|+++......... ....+|||||++|++.||+++++|++.
T Consensus 65 ------~pi-----~~G-----------~i~d~~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~ 121 (334)
T PRK13927 65 ------RPM-----KDG-----------VIADFDVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALG 121 (334)
T ss_pred ------ecC-----CCC-----------eecCHHHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 011 111 111113344555555544333221 123899999999999999999999999
Q ss_pred cCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccc
Q 005099 235 AGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~ 314 (714)
||++.+.+++||+|||++|+.....+..++|||+||||||+++++.++.. ..++.++||++||+.|.+++.+++.
T Consensus 122 ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~~ 196 (334)
T PRK13927 122 AGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNYN 196 (334)
T ss_pred cCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999876667789999999999999999876533 2455789999999999999987664
Q ss_pred cccCCCchhcHHHHHHHHHHHHHhhhhcCCCce----eeeec--cccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 005099 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ----TNISL--PFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTP 388 (714)
Q Consensus 315 ~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~----~~i~i--~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~ 388 (714)
.... ...||++|+.++.... ..+.+ +....+ .+..++|+|++|++++.+.++++.+.
T Consensus 197 ~~~~-------------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~e~i~~~~~~i~~~ 259 (334)
T PRK13927 197 LLIG-------------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTG----LPKTITISSNEIREALQEPLSAIVEA 259 (334)
T ss_pred cCcC-------------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCC----CCeEEEECHHHHHHHHHHHHHHHHHH
Confidence 2211 3478999999886432 22222 111111 44578999999999999999999999
Q ss_pred HHHHHHHcCCC--CCCCC-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 389 VETSLRDAKLS--FKDLD-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 389 i~~~L~~a~~~--~~~i~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
|.++|+++... ...++ .|+|+||+|++|.|+++|++.|+.++....||+++||+||++++..
T Consensus 260 i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 260 VKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999998643 22334 5999999999999999999999999999999999999999999765
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=321.72 Aligned_cols=312 Identities=25% Similarity=0.349 Sum_probs=235.5
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC-C-CEEecHHHHHhhhhCCCchHHHHhHhhCCCchh
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN-G-DRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE 153 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~-~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~ 153 (714)
...+||||||++|+++++.++ .++ .+||+|+|... + ..++|..|+......|.+.. ++
T Consensus 8 ~~~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~--------- 67 (335)
T PRK13930 8 SKDIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AI--------- 67 (335)
T ss_pred ccceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Ee---------
Confidence 345999999999999886333 233 16999999853 2 36899999876655554321 00
Q ss_pred hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHH
Q 005099 154 VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGR 233 (714)
Q Consensus 154 v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~ 233 (714)
+|+ .+| .+...+.+..+|+++.+.+..........+|+|+|++|+..+|+++.+|++
T Consensus 68 -------~pi-----~~G-----------~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e 124 (335)
T PRK13930 68 -------RPL-----KDG-----------VIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAE 124 (335)
T ss_pred -------ecC-----CCC-----------eEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 111 111 112234567777777766554434446789999999999999999999999
Q ss_pred HcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 005099 234 IAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 313 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~ 313 (714)
.+|++.+.+++||+|||++|+........+||||+||||||++++..+... ..+...+||.+||+.|.+++.+++
T Consensus 125 ~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~~~ 199 (335)
T PRK13930 125 HAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRRKY 199 (335)
T ss_pred HcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHHHh
Confidence 999999999999999999998876556678999999999999999876432 245689999999999999998875
Q ss_pred ccccCCCchhcHHHHHHHHHHHHHhhhhcCCCcee----eeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHH
Q 005099 314 KRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQT----NISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPV 389 (714)
Q Consensus 314 ~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~----~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i 389 (714)
.. +.. ...||++|+.++..... .+.+.. .+........+.|++++|++++.+.++++.+.|
T Consensus 200 ~~----~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i 264 (335)
T PRK13930 200 NL----LIG---------ERTAEEIKIEIGSAYPLDEEESMEVRG--RDLVTGLPKTIEISSEEVREALAEPLQQIVEAV 264 (335)
T ss_pred CC----CCC---------HHHHHHHHHHhhcCcCCCCCceEEEEC--ccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHH
Confidence 32 111 35799999999864321 122211 111111345788999999999999999999999
Q ss_pred HHHHHHcCCC--CCCCC-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 390 ETSLRDAKLS--FKDLD-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 390 ~~~L~~a~~~--~~~i~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
.++|+.+... .+.++ .|+|+||+|++|.++++|++.|+.++....+|+++||+||++.+..
T Consensus 265 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 265 KSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 9999986532 23345 4999999999999999999999998888889999999999999764
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=287.56 Aligned_cols=310 Identities=28% Similarity=0.415 Sum_probs=219.7
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC-CE-EecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG-DR-LVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~-~~-~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
.-+||||||+|+.|+.- ++-.++ + .||+|+|+.+. +. .+|..|+...-+.|.+
T Consensus 2 ~~igIDLGT~~t~i~~~--~~Giv~-~------epSvVA~~~~~~~i~avG~~A~~m~gktp~~---------------- 56 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVK--GKGIVL-N------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDN---------------- 56 (326)
T ss_dssp SEEEEEE-SSEEEEEET--TTEEEE-E------EES-EEEETTT--EEEESHHHHTTTTS-GTT----------------
T ss_pred CceEEecCcccEEEEEC--CCCEEE-e------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCc----------------
Confidence 46899999999998543 332233 3 59999999753 33 3899986443333332
Q ss_pred hhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHH
Q 005099 155 DEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRI 234 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~ 234 (714)
+.+..|-....+.-.++...+|+++.+.+.......-..++|+||+.-++.+|+++.+|+..
T Consensus 57 ------------------i~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~ 118 (326)
T PF06723_consen 57 ------------------IEVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQ 118 (326)
T ss_dssp ------------------EEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHH
T ss_pred ------------------cEEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 12222222333444577888888888877664233345899999999999999999999999
Q ss_pred cCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccc
Q 005099 235 AGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~ 314 (714)
||...+.|+.||.|||+..+.+..++...||+|+||||||++++...+-.. +.....||++||+.|.+|+.++|+
T Consensus 119 aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~-----s~si~~gG~~~DeaI~~~ir~~y~ 193 (326)
T PF06723_consen 119 AGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA-----SRSIRIGGDDIDEAIIRYIREKYN 193 (326)
T ss_dssp TT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE-----EEEES-SHHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE-----EEEEEecCcchhHHHHHHHHHhhC
Confidence 999999999999999999999988889999999999999999997554322 222589999999999999999986
Q ss_pred cccCCCchhcHHHHHHHHHHHHHhhhhcCCCce----eeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHH
Q 005099 315 RDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ----TNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVE 390 (714)
Q Consensus 315 ~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~----~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~ 390 (714)
-..+ .+.||++|+.+++... ..+.+. ..+......-++.|+-+++.+.+.+.+.+|.+.|+
T Consensus 194 l~Ig-------------~~tAE~iK~~~g~~~~~~~~~~~~v~--Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~ 258 (326)
T PF06723_consen 194 LLIG-------------ERTAEKIKIEIGSASPPEEEESMEVR--GRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIK 258 (326)
T ss_dssp EE---------------HHHHHHHHHHH-BSS--HHHHEEEEE--EEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred cccC-------------HHHHHHHHHhcceeeccCCCceEEEE--CccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 4444 5689999999886532 223322 22212225678999999999999999999999999
Q ss_pred HHHHHcCCCC-CCC--CEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHh
Q 005099 391 TSLRDAKLSF-KDL--DEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 391 ~~L~~a~~~~-~~i--~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa 449 (714)
++|++..-.. .|| ++|+|+||+++++.+.++|++.++.++....||..+||.||.....
T Consensus 259 ~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 259 EVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 9999843110 122 5899999999999999999999999999999999999999987644
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=265.74 Aligned_cols=202 Identities=23% Similarity=0.342 Sum_probs=175.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEE
Q 005099 185 AAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETIL 264 (714)
Q Consensus 185 ~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vL 264 (714)
..-+...++|+++++.++.+++.++.++|||||++|++.||+++.+|++.||++++.+++||.|||++|+.. ..+
T Consensus 37 ~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~-----~~~ 111 (239)
T TIGR02529 37 VDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK-----NGA 111 (239)
T ss_pred EEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-----CcE
Confidence 345788999999999999999999999999999999999999999999999999999999999999998754 259
Q ss_pred EEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCC
Q 005099 265 VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSS 344 (714)
Q Consensus 265 VvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~ 344 (714)
|+|+||||+|+++++.+...+ ..+..+||++||+.|.+++. ++ +.+||++|+.++.
T Consensus 112 vvDiGggtt~i~i~~~G~i~~-----~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K~~~~~ 167 (239)
T TIGR02529 112 VVDVGGGTTGISILKKGKVIY-----SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYKRGHKD 167 (239)
T ss_pred EEEeCCCcEEEEEEECCeEEE-----EEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHHHhcCC
Confidence 999999999999986443222 44678999999999876653 22 4689999987541
Q ss_pred CceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHh
Q 005099 345 LTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKK 424 (714)
Q Consensus 345 ~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~ 424 (714)
.+++.+++.++++++.+.+++.|++. .++.|+|+||+|++|.+++.|++
T Consensus 168 --------------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~ 216 (239)
T TIGR02529 168 --------------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEK 216 (239)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHH
Confidence 34567899999999999999999964 46799999999999999999999
Q ss_pred hcCCCCCcCCCChhHHHhHHHH
Q 005099 425 MTGREPNVTVNPDEVVALGAAV 446 (714)
Q Consensus 425 ~fg~~~~~~~np~eaVA~GAa~ 446 (714)
.|+.++..+.||++++|.|||+
T Consensus 217 ~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 217 QLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HhCCCcccCCCCCeehhheeec
Confidence 9999999999999999999986
|
|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-29 Score=250.94 Aligned_cols=316 Identities=27% Similarity=0.372 Sum_probs=242.9
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC--CC--EEecHHHHHhhhhCCCchHHHHhHhhCCCc
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN--GD--RLVGQIAKRQAVVNPENTFFSVKRFIGRKM 151 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~--~~--~~vG~~A~~~~~~~p~~~i~~~KrllG~~~ 151 (714)
+..|||||||.|+.|..-..| +++| -||+|++... .. ..+|..|+ +++|+..
T Consensus 6 s~diGIDLGTanTlV~~k~kg---IVl~------ePSVVAi~~~~~~~~v~aVG~eAK---------------~MlGrTP 61 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKG---IVLN------EPSVVAIESEGKTKVVLAVGEEAK---------------QMLGRTP 61 (342)
T ss_pred cccceeeecccceEEEEcCce---EEec------CceEEEEeecCCCceEEEehHHHH---------------HHhccCC
Confidence 458999999999999765222 5555 5999999872 22 23899885 5566653
Q ss_pred hhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcC-CCcCeEEEEecCCCCHHHHHHHHH
Q 005099 152 VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLN-DSVTKAVVTVPAYFNDSQRTATKD 230 (714)
Q Consensus 152 ~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~-~~v~~~VITVPa~f~~~qR~~l~~ 230 (714)
.+ +..-.|-.+..+.-.++...+|+|+.+....... ...-.++|.||..-++-+|+++++
T Consensus 62 ~n-------------------i~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~e 122 (342)
T COG1077 62 GN-------------------IVAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKE 122 (342)
T ss_pred CC-------------------ceEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHH
Confidence 21 1111222244455667888889999888764333 344479999999999999999999
Q ss_pred HHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHH
Q 005099 231 AGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLA 310 (714)
Q Consensus 231 Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~ 310 (714)
|++.||...+.++.||.|||+..++....+..-+|||+||||+|++++.+.+-+. +....+||+.||+.|.+|+.
T Consensus 123 a~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~-----~~Sirv~GD~~De~Ii~yvr 197 (342)
T COG1077 123 AAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVS-----SSSVRVGGDKMDEAIIVYVR 197 (342)
T ss_pred HHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEE-----EeeEEEecchhhHHHHHHHH
Confidence 9999999999999999999999999877777889999999999999999887543 33468999999999999999
Q ss_pred hccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCcee----eeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHH
Q 005099 311 SNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQT----NISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLK 386 (714)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~----~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~ 386 (714)
++|+-..| -+.+|++|+........ ...++.-..+.-....-.++++-+++.+.+++.+++|.
T Consensus 198 ~~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iv 264 (342)
T COG1077 198 KKYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIV 264 (342)
T ss_pred HHhCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHH
Confidence 99876555 34689999987654321 11111111111111445689999999999999999999
Q ss_pred HHHHHHHHHcC--CCCCCCC-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhh
Q 005099 387 TPVETSLRDAK--LSFKDLD-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLA 452 (714)
Q Consensus 387 ~~i~~~L~~a~--~~~~~i~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls 452 (714)
+.++..|+... +..+-++ .++|+||++.+..+.+.|.+..+.++....+|-.|||.|+.+....+.
T Consensus 265 eair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 265 EAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999853 3333344 599999999999999999999999999999999999999988776543
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=248.36 Aligned_cols=202 Identities=25% Similarity=0.395 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEE
Q 005099 187 EEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVF 266 (714)
Q Consensus 187 eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVv 266 (714)
.+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|... ..+|+
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-----~~~vv 140 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-----NGAVV 140 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-----CcEEE
Confidence 4677778999999999998988999999999999999999999999999999999999999999988653 25999
Q ss_pred EeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc
Q 005099 267 DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT 346 (714)
Q Consensus 267 D~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~ 346 (714)
|+||||||+++++-+...+ .++..+||++||+.|.+++.- + +.+||++|+.++
T Consensus 141 DIGggtt~i~v~~~g~~~~-----~~~~~~GG~~it~~Ia~~l~i--------~-----------~~eAE~lK~~~~--- 193 (267)
T PRK15080 141 DIGGGTTGISILKDGKVVY-----SADEPTGGTHMSLVLAGAYGI--------S-----------FEEAEQYKRDPK--- 193 (267)
T ss_pred EeCCCcEEEEEEECCeEEE-----EecccCchHHHHHHHHHHhCC--------C-----------HHHHHHHHhccC---
Confidence 9999999999976432222 346799999999999987631 1 468999998743
Q ss_pred eeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc
Q 005099 347 QTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 347 ~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f 426 (714)
+++++.++++++++++.+.+++.++.. +++.|+|+||+|++|.+++.+++.|
T Consensus 194 -----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l 245 (267)
T PRK15080 194 -----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT 245 (267)
T ss_pred -----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh
Confidence 246788999999999999999999863 5789999999999999999999999
Q ss_pred CCCCCcCCCChhHHHhHHHHHH
Q 005099 427 GREPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 427 g~~~~~~~np~eaVA~GAa~~a 448 (714)
+.++....||+.++|.|||++|
T Consensus 246 g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 246 GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCCcccCCCchHHHHHHHHhhC
Confidence 9999999999999999999874
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=228.53 Aligned_cols=195 Identities=22% Similarity=0.366 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHH
Q 005099 222 DSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 301 (714)
Q Consensus 222 ~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~ 301 (714)
....+.+.+|++.||+++..++.||.|+|++|......+..++|+|+||||||++++..+...+ .....+||++|
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~-----~~~i~~GG~~i 231 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY-----TKVIPIGGNHI 231 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE-----EeeecchHHHH
Confidence 3456778889999999999999999999999976544467899999999999999997433222 33468999999
Q ss_pred HHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc------eeeeeccccccCCCCCceeEEEecHHHHH
Q 005099 302 DKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT------QTNISLPFITATADGPKHIDTTLTRVKFE 375 (714)
Q Consensus 302 D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~------~~~i~i~~~~~~~~g~~~~~~~itr~efe 375 (714)
|+.|.+.+.. .+.+||++|+.++... +..+.++... .+....|+|++|+
T Consensus 232 t~~i~~~l~~-------------------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~is~~~l~ 286 (371)
T TIGR01174 232 TKDIAKALRT-------------------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSLSRKELA 286 (371)
T ss_pred HHHHHHHhCC-------------------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEEcHHHHH
Confidence 9998775421 1568999999998642 3445554432 2356899999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHcCCCCCCCCE-EEEEcCCCCchhHHHHHHhhcCCCCCc------------CCCChhHHH
Q 005099 376 ELCSDLLDRLKTPVE-TSLRDAKLSFKDLDE-VILVGGSTRIPAVQELVKKMTGREPNV------------TVNPDEVVA 441 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~-~~L~~a~~~~~~i~~-VvLvGGssrip~v~~~l~~~fg~~~~~------------~~np~eaVA 441 (714)
+++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|.|++++++.|+.++.. .-+|..++|
T Consensus 287 ~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 287 EIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHH
Confidence 999999999999997 999998876 66776 999999999999999999999865421 127889999
Q ss_pred hHHHHH
Q 005099 442 LGAAVQ 447 (714)
Q Consensus 442 ~GAa~~ 447 (714)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 998864
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=224.77 Aligned_cols=195 Identities=19% Similarity=0.262 Sum_probs=150.3
Q ss_pred HHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHH
Q 005099 226 TATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRI 305 (714)
Q Consensus 226 ~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l 305 (714)
+.+.+|++.|||++..++.||.|+|++++.+...+..++|+|+||||||+++++ ++.+. ......+||++|++.|
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~it~dI 243 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNVVTSDI 243 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHHHHHHH
Confidence 344569999999999999999999999977655578899999999999999997 34322 2334789999999999
Q ss_pred HHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCC------ceeeeeccccccCCCCCceeEEEecHHHHHHHHH
Q 005099 306 VDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSL------TQTNISLPFITATADGPKHIDTTLTRVKFEELCS 379 (714)
Q Consensus 306 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~------~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~ 379 (714)
...+.- + ..+||++|+.+... ....+.++.... .....++|.+|.+++.
T Consensus 244 a~~l~i--------~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~------~~~~~i~~~~l~~ii~ 298 (420)
T PRK09472 244 AYAFGT--------P-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGG------RPPRSLQRQTLAEVIE 298 (420)
T ss_pred HHHhCc--------C-----------HHHHHHHHHhcceeccccCCCCceeEecCCCC------CCCeEEcHHHHHHHHH
Confidence 866531 1 46899999765432 233455553321 1125889999999999
Q ss_pred HHHHHHHHHHH-------HHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCc------------CCCChhHH
Q 005099 380 DLLDRLKTPVE-------TSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNV------------TVNPDEVV 440 (714)
Q Consensus 380 ~l~~~i~~~i~-------~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~------------~~np~eaV 440 (714)
+.++++.+.++ ..|.++++....++.|+|+||+|++|.|++++++.|+.++.. ..+|..++
T Consensus 299 ~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~at 378 (420)
T PRK09472 299 PRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYST 378 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHHH
Confidence 97666666665 455667777778899999999999999999999999865432 24899999
Q ss_pred HhHHHHHHhH
Q 005099 441 ALGAAVQAGV 450 (714)
Q Consensus 441 A~GAa~~aa~ 450 (714)
|.|.++|+..
T Consensus 379 a~Gl~~~~~~ 388 (420)
T PRK09472 379 AVGLLHYGKE 388 (420)
T ss_pred HHHHHHHhhh
Confidence 9999999763
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-19 Score=190.51 Aligned_cols=205 Identities=27% Similarity=0.421 Sum_probs=168.5
Q ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecC
Q 005099 213 VVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSG 292 (714)
Q Consensus 213 VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~g 292 (714)
++|+|..+ -+.+.+|.+.+|+++..++.+|.|+|.+.+.+...+..++++|+||||+|+++++-+.-.+ .+
T Consensus 159 vit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~-----~~ 229 (418)
T COG0849 159 VITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRY-----TG 229 (418)
T ss_pred EEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEE-----Ee
Confidence 55665544 5678899999999999999999999999998877789999999999999999998443222 45
Q ss_pred CCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce------eeeeccccccCCCCCceeE
Q 005099 293 DTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ------TNISLPFITATADGPKHID 366 (714)
Q Consensus 293 d~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~------~~i~i~~~~~~~~g~~~~~ 366 (714)
...+||++++..|..-|... +..||++|........ ..+.++....+ ..
T Consensus 230 ~ipvgG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~------~~ 284 (418)
T COG0849 230 VIPVGGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSVGSD------IP 284 (418)
T ss_pred eEeeCccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccCCCc------cc
Confidence 57999999999998877554 4689999999875432 33555544322 25
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCc------------CC
Q 005099 367 TTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNV------------TV 434 (714)
Q Consensus 367 ~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~------------~~ 434 (714)
..+||.++.+++++.++++..+++..|++.++...-...|+|+||++.+|.+.+..++.|+.++.. ..
T Consensus 285 ~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~ 364 (418)
T COG0849 285 RQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIAR 364 (418)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhcc
Confidence 789999999999999999999999999999988667789999999999999999999999764321 23
Q ss_pred CChhHHHhHHHHHHhHh
Q 005099 435 NPDEVVALGAAVQAGVL 451 (714)
Q Consensus 435 np~eaVA~GAa~~aa~l 451 (714)
+|..+.|.|..++++.+
T Consensus 365 ~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 365 NPAFSTAVGLLLYGALM 381 (418)
T ss_pred CchhhhhHHHHHHHhhc
Confidence 68999999999998863
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-17 Score=176.60 Aligned_cols=308 Identities=19% Similarity=0.196 Sum_probs=194.1
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC---------CCEEecHHHHHhhhhCCCchHHHHhHhhC
Q 005099 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN---------GDRLVGQIAKRQAVVNPENTFFSVKRFIG 148 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~~i~~~KrllG 148 (714)
.|.||+||.++++++..++.|.++ +||+|+...+ ...++|..|......
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------- 58 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-------------- 58 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC--------------
Confidence 378999999999999877656544 5777776533 356677766432100
Q ss_pred CCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHH
Q 005099 149 RKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTAT 228 (714)
Q Consensus 149 ~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l 228 (714)
. ..-.+|+ .+| .+.-.+.+..+++++....... ...-..+++++|..++..+|+.+
T Consensus 59 -~------~~~~~P~-----~~G-----------~i~d~~~~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~r~~~ 114 (371)
T cd00012 59 -G------LELIYPI-----EHG-----------IVVDWDDMEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSNREKT 114 (371)
T ss_pred -c------eEEcccc-----cCC-----------EEeCHHHHHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHHHHHH
Confidence 0 0011121 112 1223345556666666542211 12235799999999998888888
Q ss_pred HH-HHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHH
Q 005099 229 KD-AGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 307 (714)
Q Consensus 229 ~~-Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~ 307 (714)
.+ +.+..|+..+.++++|.+|+++++. .+.+|+|+|+++++++.+.- |.. +........+||+++|+.|.+
T Consensus 115 ~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~~--G~~-~~~~~~~~~~GG~~l~~~l~~ 186 (371)
T cd00012 115 TEIMFETFNVPALYVAIQAVLSLYASGR-----TTGLVVDSGDGVTHVVPVYD--GYV-LPHAIKRLDLAGRDLTRYLKE 186 (371)
T ss_pred HHHhhccCCCCEEEEechHHHHHHhcCC-----CeEEEEECCCCeeEEEEEEC--CEE-chhhheeccccHHHHHHHHHH
Confidence 76 4677899999999999999999875 57899999999999887763 322 222233468999999999999
Q ss_pred HHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCcee---e-----eeccccccCCCCCceeEEEecHHHHHHHHH
Q 005099 308 WLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQT---N-----ISLPFITATADGPKHIDTTLTRVKFEELCS 379 (714)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~---~-----i~i~~~~~~~~g~~~~~~~itr~efe~l~~ 379 (714)
++..+... .+.. .-...++.+|+.+...... . ...........-+....+.++.+.| .+.+
T Consensus 187 ~l~~~~~~---~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~-~~~E 255 (371)
T cd00012 187 LLRERGYE---LNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERF-RAPE 255 (371)
T ss_pred HHHhcCCC---ccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHh-hChH
Confidence 98765421 1111 1134567777765432110 0 0000000000001123456665544 3333
Q ss_pred HHHH---------HHHHHHHHHHHHcCC--CCCCCCEEEEEcCCCCchhHHHHHHhhcCC----------CCCcCCCChh
Q 005099 380 DLLD---------RLKTPVETSLRDAKL--SFKDLDEVILVGGSTRIPAVQELVKKMTGR----------EPNVTVNPDE 438 (714)
Q Consensus 380 ~l~~---------~i~~~i~~~L~~a~~--~~~~i~~VvLvGGssrip~v~~~l~~~fg~----------~~~~~~np~e 438 (714)
.+++ .+.+.|.+++..... ...-++.|+|+||+|++|.+.+.|.+.+.. .+....+|..
T Consensus 256 ~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~ 335 (371)
T cd00012 256 ILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKY 335 (371)
T ss_pred hcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccc
Confidence 3333 677888888877532 223357899999999999999999988742 1234568889
Q ss_pred HHHhHHHHHHhH
Q 005099 439 VVALGAAVQAGV 450 (714)
Q Consensus 439 aVA~GAa~~aa~ 450 (714)
++-+||+++|..
T Consensus 336 ~aw~G~si~as~ 347 (371)
T cd00012 336 SVWLGGSILASL 347 (371)
T ss_pred cEEeCchhhcCc
Confidence 999999999865
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.8e-16 Score=168.96 Aligned_cols=305 Identities=19% Similarity=0.217 Sum_probs=186.4
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC--------CEEecHHHHHhhhhCCCchHHHHhHhhC
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG--------DRLVGQIAKRQAVVNPENTFFSVKRFIG 148 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~--------~~~vG~~A~~~~~~~p~~~i~~~KrllG 148 (714)
..|.||+||.++++++..+..|.++ +||+|+...++ ..++|..|.... .+.
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~--------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL--------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC----CCc---------
Confidence 4799999999999999877777666 68988876543 235676653210 000
Q ss_pred CCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHH
Q 005099 149 RKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTAT 228 (714)
Q Consensus 149 ~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l 228 (714)
.-.+|+ ....+.-.+.+..+++++...... ....-..+++|+|...+..+|+.+
T Consensus 61 ---------~~~~P~----------------~~G~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~ 114 (373)
T smart00268 61 ---------ELKYPI----------------EHGIVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKI 114 (373)
T ss_pred ---------eecCCC----------------cCCEEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHH
Confidence 011121 112223446666777777664211 112235789999999999999999
Q ss_pred HHHH-HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHH
Q 005099 229 KDAG-RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 307 (714)
Q Consensus 229 ~~Aa-~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~ 307 (714)
.+.+ +..|++-+.++++|.+|+++++ ..+.||+|+|+++++++.+. +|.. +.....-..+||.++|+.|.+
T Consensus 115 ~e~lfE~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~~~l~~ 186 (373)
T smart00268 115 LEIMFETFNFPALYIAIQAVLSLYASG-----RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLTDYLKE 186 (373)
T ss_pred HHHhhccCCCCeEEEeccHHHHHHhCC-----CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHHHHHHH
Confidence 8876 5679999999999999999987 35789999999999999886 3322 222223358999999999999
Q ss_pred HHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce---eee----------eccccccCCCCCceeEEEecHHHH
Q 005099 308 WLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ---TNI----------SLPFITATADGPKHIDTTLTRVKF 374 (714)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~---~~i----------~i~~~~~~~~g~~~~~~~itr~ef 374 (714)
++...-. .+ ... .-...++.+|+.+..... ... ..+..+.-.+| . .+.+..+.|
T Consensus 187 ~l~~~~~-~~--~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg-~--~~~~~~er~ 253 (373)
T smart00268 187 LLSERGY-QF--NSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDG-N--TIKVGNERF 253 (373)
T ss_pred HHHhcCC-CC--CcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCC-C--EEEEChHHe
Confidence 9876211 01 111 112345666665432110 000 00000000011 1 233433333
Q ss_pred HHHHHHHH---------HHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHHHhhcCC------C--CCcCCC
Q 005099 375 EELCSDLL---------DRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELVKKMTGR------E--PNVTVN 435 (714)
Q Consensus 375 e~l~~~l~---------~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg~------~--~~~~~n 435 (714)
.+.+.++ ..+.+.|.++|..+..+ ..-.+.|+|+||+|++|.+.+.|.+.+.. + +....+
T Consensus 254 -~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~ 332 (373)
T smart00268 254 -RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPE 332 (373)
T ss_pred -eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCC
Confidence 2223233 35677777777765322 12236799999999999999999887721 1 222345
Q ss_pred ChhHHHhHHHHHHhH
Q 005099 436 PDEVVALGAAVQAGV 450 (714)
Q Consensus 436 p~eaVA~GAa~~aa~ 450 (714)
+..++=.||+++|..
T Consensus 333 ~~~~~W~G~silas~ 347 (373)
T smart00268 333 RKYSVWLGGSILASL 347 (373)
T ss_pred CccceEeCcccccCc
Confidence 566667787777654
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-16 Score=147.69 Aligned_cols=196 Identities=26% Similarity=0.393 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCc
Q 005099 192 QVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGG 271 (714)
Q Consensus 192 ~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgG 271 (714)
.+.+.+++.+++.+|...+++.-++|..-.+...+...+..+.||++++..++||||||.-..++.. .|+|+|||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg-----~VVDiGGG 150 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG-----GVVDIGGG 150 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC-----cEEEeCCC
Confidence 4678899999999999999999999999877777888889999999999999999999876665533 79999999
Q ss_pred ceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeee
Q 005099 272 TFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNIS 351 (714)
Q Consensus 272 T~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~ 351 (714)
|+-+|+++-.+-.| ..|..-||.++...|+- .++++ +++||..|+.-...
T Consensus 151 TTGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG--------~ygi~-----------~EeAE~~Kr~~k~~------ 200 (277)
T COG4820 151 TTGISIVKKGKVIY-----SADEPTGGTHMTLVLAG--------NYGIS-----------LEEAEQYKRGHKKG------ 200 (277)
T ss_pred cceeEEEEcCcEEE-----eccCCCCceeEEEEEec--------ccCcC-----------HhHHHHhhhccccc------
Confidence 99999998666555 56688899877655432 24544 56788888652111
Q ss_pred ccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCC
Q 005099 352 LPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN 431 (714)
Q Consensus 352 i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~ 431 (714)
+|.-..+.|+++++.+.+.+.++..+ +..+.|+||+|.-|.+.+.+++.|+.++.
T Consensus 201 --------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v~ 255 (277)
T COG4820 201 --------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQVH 255 (277)
T ss_pred --------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhccccc
Confidence 11123468999999999999999854 56799999999999999999999999988
Q ss_pred cCCCChhHHHhHHHHH
Q 005099 432 VTVNPDEVVALGAAVQ 447 (714)
Q Consensus 432 ~~~np~eaVA~GAa~~ 447 (714)
.+-.|....-+|.|+-
T Consensus 256 ~P~~p~y~TPLgIA~s 271 (277)
T COG4820 256 LPQHPLYMTPLGIASS 271 (277)
T ss_pred cCCCcceechhhhhhc
Confidence 8888887777776653
|
|
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-12 Score=140.34 Aligned_cols=205 Identities=16% Similarity=0.207 Sum_probs=138.8
Q ss_pred EEEEecCCCCHHHH-HHHHHHHHHc------C------CCeeEEechhHHHHHHcccccC--------CCceEEEEEeCC
Q 005099 212 AVVTVPAYFNDSQR-TATKDAGRIA------G------LDVLRIINEPTAASLAYGFEKK--------NNETILVFDLGG 270 (714)
Q Consensus 212 ~VITVPa~f~~~qR-~~l~~Aa~~A------G------l~~~~li~Ep~AAAlay~~~~~--------~~~~vLVvD~Gg 270 (714)
++...|..+-..++ +.+++..... | +..+.+++||.+|.+.+..+.. ....++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 34599998854453 6676654321 1 1346789999999887766421 246789999999
Q ss_pred cceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeee
Q 005099 271 GTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNI 350 (714)
Q Consensus 271 GT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i 350 (714)
||+|++++. ++.+ +...++....|..++.+.|.+++..+.. +..+. .. .++++ |... .+
T Consensus 195 ~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~~---~~~~~--~~-------~ie~~---l~~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKEE---GASIT--PY-------MLEKG---LEYG---AC 253 (344)
T ss_pred CcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhCC---CCCCC--HH-------HHHHH---HHcC---cE
Confidence 999999986 3333 2333444789999999999999854432 22221 11 12222 1111 11
Q ss_pred eccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCC
Q 005099 351 SLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREP 430 (714)
Q Consensus 351 ~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~ 430 (714)
.+. . ... +.+ ++++.++++++++++.+.|+..+.+ ..+++.|+|+||++++ +++.|++.|+. +
T Consensus 254 ~~~----~---~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~-~ 316 (344)
T PRK13917 254 KLN----Q---KTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD-V 316 (344)
T ss_pred EeC----C---Cce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC-e
Confidence 110 0 011 222 4667789999999999988888864 3578999999999987 88999999975 3
Q ss_pred CcCCCChhHHHhHHHHHHhHhhCC
Q 005099 431 NVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 431 ~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
....||..|.|+|...+|..+.+.
T Consensus 317 ~~~~~p~~ANa~G~~~~g~~~~~~ 340 (344)
T PRK13917 317 EKADESQFANVRGYYKYGELLKNK 340 (344)
T ss_pred EEcCChHHHHHHHHHHHHHHHhcc
Confidence 667899999999999999876553
|
|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-12 Score=140.03 Aligned_cols=292 Identities=17% Similarity=0.148 Sum_probs=174.7
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC------------CEEecHHHHHhhhhCCCchHHHH
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG------------DRLVGQIAKRQAVVNPENTFFSV 143 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~------------~~~vG~~A~~~~~~~p~~~i~~~ 143 (714)
...|.||+|+.++++++..+..|.++ +||+|+...+. +.++|+.|...
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~------------ 63 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAA------------ 63 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhC------------
Confidence 34799999999999999876677765 68888764331 23344443211
Q ss_pred hHhhCCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHH
Q 005099 144 KRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDS 223 (714)
Q Consensus 144 KrllG~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~ 223 (714)
.+...+.++-+...+.--+.+..+++++...... ....-..+++|.|..++..
T Consensus 64 --------------------------~~~~~l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~-~~p~~~~vllte~~~~~~~ 116 (414)
T PTZ00280 64 --------------------------SKSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLR-CEPEEHYFILTEPPMNPPE 116 (414)
T ss_pred --------------------------cCCcEEecCccCCEeCCHHHHHHHHHHHHHHhhc-cCCCCCceEEeeCCCCcHH
Confidence 0001111121122233345566667665432111 1122246899999999999
Q ss_pred HHHHHHHHH-HHcCCCeeEEechhHHHHHHcccccC-----CCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCC
Q 005099 224 QRTATKDAG-RIAGLDVLRIINEPTAASLAYGFEKK-----NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG 297 (714)
Q Consensus 224 qR~~l~~Aa-~~AGl~~~~li~Ep~AAAlay~~~~~-----~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lG 297 (714)
+|+.+.+.+ +..+++-+.+.++|.++++++..... ...+-||+|+|.++++++-+.- |.. +.....-..+|
T Consensus 117 ~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~--G~~-l~~~~~~~~~G 193 (414)
T PTZ00280 117 NREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVD--GYV-IGSSIKHIPLA 193 (414)
T ss_pred HHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEEC--CEE-cccceEEecCc
Confidence 999987765 44588889999999999998743221 1345699999999999876652 322 11111235899
Q ss_pred hhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCcee-----------e--eeccccccCCCCCce
Q 005099 298 GDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQT-----------N--ISLPFITATADGPKH 364 (714)
Q Consensus 298 G~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~-----------~--i~i~~~~~~~~g~~~ 364 (714)
|.++|+.|.++|.++.. .+... .....++.+|+.++..... . ........+..+...
T Consensus 194 G~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~ 263 (414)
T PTZ00280 194 GRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKP 263 (414)
T ss_pred HHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCc
Confidence 99999999999876421 11110 0123466677766532110 0 000000111111123
Q ss_pred eEEEecHHHHHH---HHHHHH------HHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHHHhhcC
Q 005099 365 IDTTLTRVKFEE---LCSDLL------DRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELVKKMTG 427 (714)
Q Consensus 365 ~~~~itr~efe~---l~~~l~------~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg 427 (714)
..+.|..+.|.. ++.|-+ ..+.+.|.++|.++..+ ..-.+.|+|+||+|.+|.+.+.|.+.+.
T Consensus 264 ~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 264 YTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred cEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 457777776643 333422 14567777777765432 2234689999999999999999998874
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-12 Score=138.43 Aligned_cols=307 Identities=16% Similarity=0.143 Sum_probs=180.9
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC---------CEEecHHHHHhhhhCCCchHHHHhH
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG---------DRLVGQIAKRQAVVNPENTFFSVKR 145 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~~Kr 145 (714)
+...|-||+|+.++++++.-+..|.++ +||+|....+. +.++|+.|...
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~-------------- 61 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAK-------------- 61 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhcc--------------
Confidence 556899999999999999988788766 67877765431 22344443210
Q ss_pred hhCCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHH
Q 005099 146 FIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQR 225 (714)
Q Consensus 146 llG~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR 225 (714)
.+...+..+-+...+.-.+.+..++.|+...... ....-..+++|-|...+..+|
T Consensus 62 ------------------------~~~~~l~~Pi~~G~I~dwd~~e~iw~~~f~~~l~-v~p~~~pvlitE~~~~~~~~R 116 (375)
T PTZ00452 62 ------------------------RGVLAIKEPIQNGIINSWDDIEIIWHHAFYNELC-MSPEDQPVFMTDAPMNSKFNR 116 (375)
T ss_pred ------------------------ccCcEEcccCcCCEEcCHHHHHHHHHHHHHhhcC-CCcccCceeeecCCCCCHHHH
Confidence 0111122222222233344555666666432211 222335789999999999999
Q ss_pred HHHHHHH-HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHH
Q 005099 226 TATKDAG-RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 304 (714)
Q Consensus 226 ~~l~~Aa-~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~ 304 (714)
+.+.+.+ +..+.+.+.+.+.|.+++++++. .+-||+|+|.+.++++-+. +|.. +.....-..+||.++++.
T Consensus 117 e~l~eilFE~~~vp~~~~~~~~~lslya~g~-----~tglVVDiG~~~t~v~PV~--dG~~-l~~~~~r~~~gG~~lt~~ 188 (375)
T PTZ00452 117 ERMTQIMFETFNTPCLYISNEAVLSLYTSGK-----TIGLVVDSGEGVTHCVPVF--EGHQ-IPQAITKINLAGRLCTDY 188 (375)
T ss_pred HHHHHHHhhccCCceEEEechHHHHHHHCCC-----ceeeeecCCCCcceEEEEE--CCEE-eccceEEeeccchHHHHH
Confidence 9887754 55688888999999999998864 3569999999999887654 3322 112222357999999999
Q ss_pred HHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCcee---ee-------eccccccCCCCCceeEEEecHHHH
Q 005099 305 IVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQT---NI-------SLPFITATADGPKHIDTTLTRVKF 374 (714)
Q Consensus 305 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~---~i-------~i~~~~~~~~g~~~~~~~itr~ef 374 (714)
|.+.|..+ +..+.... . ...++.+|+.++..... .. ..+..+.-. ..-.+++..+.|
T Consensus 189 L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP---Dg~~i~l~~er~ 255 (375)
T PTZ00452 189 LTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP---DGNILTIKSQKF 255 (375)
T ss_pred HHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC---CCCEEEeehHHh
Confidence 99988543 11111110 0 12345566655422100 00 000001111 112456666666
Q ss_pred H---HHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHHHhhcCC------C--CCcCCCC
Q 005099 375 E---ELCSDLL-----DRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELVKKMTGR------E--PNVTVNP 436 (714)
Q Consensus 375 e---~l~~~l~-----~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg~------~--~~~~~np 436 (714)
. -+++|-+ ..+.++|.+++..+..+ ..-.+.|+|+||+|.+|.+.++|.+.+.. + +..+.++
T Consensus 256 ~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r 335 (375)
T PTZ00452 256 RCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDR 335 (375)
T ss_pred cCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCc
Confidence 2 2233322 23567777777765422 23347999999999999999999877621 1 1122344
Q ss_pred hhHHHhHHHHHHh
Q 005099 437 DEVVALGAAVQAG 449 (714)
Q Consensus 437 ~eaVA~GAa~~aa 449 (714)
..++=+|++++|.
T Consensus 336 ~~~aW~GgSilas 348 (375)
T PTZ00452 336 RFSAWIGGSIQCT 348 (375)
T ss_pred ceeEEECchhhcC
Confidence 4566667777765
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=141.62 Aligned_cols=310 Identities=22% Similarity=0.277 Sum_probs=181.4
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC----CEEecHHHHHhhhhCCCchHHHHhHhhCCCc
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG----DRLVGQIAKRQAVVNPENTFFSVKRFIGRKM 151 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~----~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~ 151 (714)
..+|-||+|+.++++++..+..|.++ +||+++..... ..++|..+... .+
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~--------------- 57 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RS--------------- 57 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GT---------------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hh---------------
Confidence 46899999999999999866667655 68888876542 35677653210 00
Q ss_pred hhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHH
Q 005099 152 VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDA 231 (714)
Q Consensus 152 ~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~A 231 (714)
. ..+..+-+...+.-.+.+..+++++...... ....-..++++.|..++..+|+.+.+.
T Consensus 58 ----------~----------~~~~~p~~~g~i~~~~~~e~i~~~~~~~~l~-~~~~~~~vll~~~~~~~~~~r~~l~e~ 116 (393)
T PF00022_consen 58 ----------N----------LELRSPIENGVIVDWDALEEIWDYIFSNLLK-VDPSDHPVLLTEPPFNPRSQREKLAEI 116 (393)
T ss_dssp ----------G----------EEEEESEETTEESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHH
T ss_pred ----------h----------eeeeeeccccccccccccccccccccccccc-cccccceeeeeccccCCchhhhhhhhh
Confidence 0 0111111122223345556666666654211 122335799999999999999987665
Q ss_pred -HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHH
Q 005099 232 -GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLA 310 (714)
Q Consensus 232 -a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~ 310 (714)
.+..+++-+.++++|.+|+++++.. +-||+|+|.+.+.|+-+. +|.. +........+||.++++.|.++|.
T Consensus 117 lfE~~~~~~v~~~~~~~~a~~~~g~~-----tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt~~l~~lL~ 188 (393)
T PF00022_consen 117 LFEKFGVPSVYFIPSPLLALYASGRT-----TGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLTEYLKELLK 188 (393)
T ss_dssp HHHTS--SEEEEEEHHHHHHHHTTBS-----SEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHHHHHHHH
T ss_pred hhcccccceeeeeecccccccccccc-----cccccccceeeeeeeeee--eccc-cccccccccccHHHHHHHHHHHHH
Confidence 4567999999999999999999865 559999999999887663 3322 111222358999999999999998
Q ss_pred hc-ccc--ccCCCch----hcHHHHHHHHHHHHHhhhhcCC---------------CceeeeeccccccCCCCCceeEEE
Q 005099 311 SN-FKR--DEGIDLL----KDKQALQRLTETAEKAKMELSS---------------LTQTNISLPFITATADGPKHIDTT 368 (714)
Q Consensus 311 ~~-~~~--~~~~~~~----~~~~~~~rL~~~~e~aK~~Ls~---------------~~~~~i~i~~~~~~~~g~~~~~~~ 368 (714)
.+ +.- .+..... ...-....-....+.+|+.+.. .....+.+| ++ ..+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP------dg---~~i~ 259 (393)
T PF00022_consen 189 ERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP------DG---QTII 259 (393)
T ss_dssp HT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T------TS---SEEE
T ss_pred hhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc------cc---cccc
Confidence 84 110 0000000 0000000112223334433221 111222222 11 2456
Q ss_pred ecHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCCC--CCCEEEEEcCCCCchhHHHHHHhhcCC--
Q 005099 369 LTRVKFEELCSDLLD----------------RLKTPVETSLRDAKLSFK--DLDEVILVGGSTRIPAVQELVKKMTGR-- 428 (714)
Q Consensus 369 itr~efe~l~~~l~~----------------~i~~~i~~~L~~a~~~~~--~i~~VvLvGGssrip~v~~~l~~~fg~-- 428 (714)
+..+.| .+.+.+|+ .+.+.|.+++.....+.. -.+.|+|+||+|++|.+.+.|.+.+..
T Consensus 260 ~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~ 338 (393)
T PF00022_consen 260 LGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLL 338 (393)
T ss_dssp ESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHS
T ss_pred cccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhh
Confidence 665555 33344433 467778888877543211 137899999999999999999877622
Q ss_pred ------CCCcCC-CChhHHHhHHHHHHhH
Q 005099 429 ------EPNVTV-NPDEVVALGAAVQAGV 450 (714)
Q Consensus 429 ------~~~~~~-np~eaVA~GAa~~aa~ 450 (714)
++.... +|..++=.||+++|..
T Consensus 339 ~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 339 PSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp GTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred hccccceeccCchhhhhcccccceeeecc
Confidence 122333 7899999999999875
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-11 Score=134.29 Aligned_cols=302 Identities=17% Similarity=0.185 Sum_probs=180.5
Q ss_pred cccCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC---------CEEecHHHHHhhhhCCCchHHH
Q 005099 72 RVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG---------DRLVGQIAKRQAVVNPENTFFS 142 (714)
Q Consensus 72 ~~~~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~ 142 (714)
+......|.||+|+.++++++..+..|.++ +||+|+...+. ..++|+.+... .
T Consensus 2 ~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~-----~----- 63 (378)
T PTZ00004 2 SVEETNAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDK-----R----- 63 (378)
T ss_pred CCCCCCeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhcc-----c-----
Confidence 333556899999999999999877777655 67877764331 23445443210 0
Q ss_pred HhHhhCCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcC--CCcCeEEEEecCCC
Q 005099 143 VKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLN--DSVTKAVVTVPAYF 220 (714)
Q Consensus 143 ~KrllG~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~--~~v~~~VITVPa~f 220 (714)
+...+..+-+...+.--+....++.++... .++ ..-..+++|-|..+
T Consensus 64 ----------------------------~~~~l~~Pi~~G~i~d~d~~e~i~~~~~~~---~l~v~~~~~pvllte~~~~ 112 (378)
T PTZ00004 64 ----------------------------GILTLKYPIEHGIVTNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLN 112 (378)
T ss_pred ----------------------------ccceEcccCcCCEEcCHHHHHHHHHHHHHh---hcccCCccCcceeecCCCC
Confidence 000111111112222334555666664321 222 22346789999999
Q ss_pred CHHHHHHHHHH-HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChh
Q 005099 221 NDSQRTATKDA-GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGD 299 (714)
Q Consensus 221 ~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~ 299 (714)
+..+|+.+.+. .+..+++.+.++++|.+++++++. .+-||+|+|.+.++++-+. +|.. +.....-.++||.
T Consensus 113 ~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~t~v~pV~--dG~~-l~~~~~~~~~GG~ 184 (378)
T PTZ00004 113 PKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYS-LPHAIHRLDVAGR 184 (378)
T ss_pred cHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC-----ceEEEEECCCCcEEEEEEE--CCEE-eecceeeecccHH
Confidence 99999877665 556799999999999999998864 3669999999999887664 3322 1222233579999
Q ss_pred HHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc-----------------eeeeeccccccCCCCC
Q 005099 300 DFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT-----------------QTNISLPFITATADGP 362 (714)
Q Consensus 300 d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~-----------------~~~i~i~~~~~~~~g~ 362 (714)
++++.|.+.|..+.. ....... ...++.+|+.+.... .....+| +|
T Consensus 185 ~lt~~L~~lL~~~~~---~~~~~~~-------~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP------dg- 247 (378)
T PTZ00004 185 DLTEYMMKILHERGT---TFTTTAE-------KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP------DG- 247 (378)
T ss_pred HHHHHHHHHHHhcCC---CCCcHHH-------HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECC------CC-
Confidence 999999999865421 1111111 223555665543211 0111111 11
Q ss_pred ceeEEEecHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHHHhhcCC---
Q 005099 363 KHIDTTLTRVKFE---ELCSDL------LDRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELVKKMTGR--- 428 (714)
Q Consensus 363 ~~~~~~itr~efe---~l~~~l------~~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg~--- 428 (714)
-.+.+..+.|. -++.|- ...+.+.|.+++.++..+ ..-...|+|+||+|.+|.+.++|...+..
T Consensus 248 --~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p 325 (378)
T PTZ00004 248 --TIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAP 325 (378)
T ss_pred --CEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCC
Confidence 23555555542 244442 224567777777765422 22246899999999999999999887631
Q ss_pred -C----CCcCCCChhHHHhHHHHHHh
Q 005099 429 -E----PNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 429 -~----~~~~~np~eaVA~GAa~~aa 449 (714)
. +....++..++=+||+++|.
T Consensus 326 ~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 326 STMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred CCccEEEecCCCCceeEEECcccccC
Confidence 1 22233455666667776654
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=134.68 Aligned_cols=304 Identities=16% Similarity=0.174 Sum_probs=179.0
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC---------CEEecHHHHHhhhhCCCchHHHHhHhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG---------DRLVGQIAKRQAVVNPENTFFSVKRFI 147 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~~Krll 147 (714)
..|-||+|+.++++++..+..|..+ +||+|+...+. ..++|+.+...
T Consensus 7 ~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~---------------- 62 (376)
T PTZ00281 7 QALVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQSK---------------- 62 (376)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhcc----------------
Confidence 4789999999999999877777655 67777654331 22344433210
Q ss_pred CCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHH
Q 005099 148 GRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTA 227 (714)
Q Consensus 148 G~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~ 227 (714)
.+...+..+-+...+.-.+....++.++..... .....-..+++|-|..+...+|+.
T Consensus 63 ----------------------~~~~~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~ 119 (376)
T PTZ00281 63 ----------------------RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREK 119 (376)
T ss_pred ----------------------ccCcEEeccCcCCEEcCHHHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHH
Confidence 000111111112222334455556666543211 112223578999999999999999
Q ss_pred HHH-HHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHH
Q 005099 228 TKD-AGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 306 (714)
Q Consensus 228 l~~-Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~ 306 (714)
+.+ ..+..++.-+.+.+.|.+++++++. .+-||+|+|.+.+.++-+.- |.. +........+||.++++.|.
T Consensus 120 l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~t~v~PV~d--G~~-~~~~~~~~~~GG~~lt~~L~ 191 (376)
T PTZ00281 120 MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVMDSGDGVSHTVPIYE--GYA-LPHAILRLDLAGRDLTDYMM 191 (376)
T ss_pred HHHHHhcccCCceeEeeccHHHHHHhcCC-----ceEEEEECCCceEEEEEEEe--ccc-chhheeeccCcHHHHHHHHH
Confidence 877 4566788889999999999998764 36699999999998764432 211 22222235899999999999
Q ss_pred HHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce------------eeeeccccccCCCCCceeEEEecHHHH
Q 005099 307 DWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ------------TNISLPFITATADGPKHIDTTLTRVKF 374 (714)
Q Consensus 307 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~------------~~i~i~~~~~~~~g~~~~~~~itr~ef 374 (714)
+.|..+- ..+.. .. -...++.+|+.++.... ......+... + ...++|..+.|
T Consensus 192 ~lL~~~~-----~~~~~-~~----~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LP--d---g~~i~i~~er~ 256 (376)
T PTZ00281 192 KILTERG-----YSFTT-TA----EREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELP--D---GQVITIGNERF 256 (376)
T ss_pred HHHHhcC-----CCCCc-HH----HHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECC--C---CCEEEeeHHHe
Confidence 9886541 11110 00 02345666766542110 0000011111 1 12355655544
Q ss_pred ---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHHHhhcCC------C--CCcCCCC
Q 005099 375 ---EELCSDLL-----DRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELVKKMTGR------E--PNVTVNP 436 (714)
Q Consensus 375 ---e~l~~~l~-----~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg~------~--~~~~~np 436 (714)
|-+++|-+ ..+.+.|.+++.++..+ ..-.+.|+|+||+|.+|.+.++|++.+.. + +..+.++
T Consensus 257 ~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r 336 (376)
T PTZ00281 257 RCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPER 336 (376)
T ss_pred eCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCC
Confidence 22333322 14567777777765322 12236899999999999999999877631 1 2223355
Q ss_pred hhHHHhHHHHHHhH
Q 005099 437 DEVVALGAAVQAGV 450 (714)
Q Consensus 437 ~eaVA~GAa~~aa~ 450 (714)
..++=+|++++|..
T Consensus 337 ~~~aW~Ggsilasl 350 (376)
T PTZ00281 337 KYSVWIGGSILASL 350 (376)
T ss_pred ceeEEECcccccCc
Confidence 66777788777653
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-11 Score=130.55 Aligned_cols=179 Identities=19% Similarity=0.251 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcc-----cc-cCCCc-eEEEEEeCCcceEEEEEEEcCceEEEEEecCC
Q 005099 221 NDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG-----FE-KKNNE-TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGD 293 (714)
Q Consensus 221 ~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~-----~~-~~~~~-~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd 293 (714)
.....+.+.++++.||+++..+..+|.|.+-.+. .. ..... .++++|+|++++++++++-+...+ ...
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~ 215 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TRE 215 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEE
Confidence 3456788899999999999999999999876662 11 11233 499999999999999997443333 344
Q ss_pred CCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHH
Q 005099 294 THLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVK 373 (714)
Q Consensus 294 ~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~e 373 (714)
..+||.+|++.|.+.+ +++ ..+||+.|....... ..
T Consensus 216 i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~-----------------~~-------- 251 (348)
T TIGR01175 216 VPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPL-----------------LY-------- 251 (348)
T ss_pred eechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCC-----------------ch--------
Confidence 6899999999987543 222 467888887532110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCc-------------------
Q 005099 374 FEELCSDLLDRLKTPVETSLRDA--KLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNV------------------- 432 (714)
Q Consensus 374 fe~l~~~l~~~i~~~i~~~L~~a--~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~------------------- 432 (714)
-.+++++.++++...|.+.|+-. ......++.|+|+||+++++.+.+.+++.|+.++..
T Consensus 252 ~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~ 331 (348)
T TIGR01175 252 DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLA 331 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHH
Confidence 02345566666666666666532 223346899999999999999999999999854321
Q ss_pred CCCChhHHHhHHHHHH
Q 005099 433 TVNPDEVVALGAAVQA 448 (714)
Q Consensus 433 ~~np~eaVA~GAa~~a 448 (714)
..+|..++|.|+|+++
T Consensus 332 ~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 332 VDAPALMTALGLALRG 347 (348)
T ss_pred hhhHHHHHHhhHhhcC
Confidence 1345678888888764
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-11 Score=128.97 Aligned_cols=302 Identities=16% Similarity=0.168 Sum_probs=178.0
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC---------CEEecHHHHHhhhhCCCchHHHHhHhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG---------DRLVGQIAKRQAVVNPENTFFSVKRFI 147 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~~Krll 147 (714)
..|-||+|+.++++++..+..|.++ +||+|+..... ..++|..|....
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~--------------- 69 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYR--------------- 69 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhhC---------------
Confidence 4688999999999999977777765 67777664321 233444442110
Q ss_pred CCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHH
Q 005099 148 GRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTA 227 (714)
Q Consensus 148 G~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~ 227 (714)
+...+.++-+...+.--+....+++++.+... ....-..+++|-|..+...+|+.
T Consensus 70 -----------------------~~~~l~~Pi~~G~v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~ 124 (380)
T PTZ00466 70 -----------------------GLLKVTYPINHGIIENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEK 124 (380)
T ss_pred -----------------------cCceeCccccCCeECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHH
Confidence 00011111112223334455556666543211 12223468899999999999999
Q ss_pred HHHH-HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHH
Q 005099 228 TKDA-GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 306 (714)
Q Consensus 228 l~~A-a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~ 306 (714)
+.+. .+..+++-+.+.+.|.+++++++. .+-+|+|+|.+.+.++-+. +|.. +........+||.++++.|.
T Consensus 125 ~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-----~tglVVD~G~~~t~v~PV~--~G~~-~~~~~~~~~~GG~~lt~~L~ 196 (380)
T PTZ00466 125 IAEVFFETFNVPALFISIQAILSLYSCGK-----TNGTVLDCGDGVCHCVSIY--EGYS-ITNTITRTDVAGRDITTYLG 196 (380)
T ss_pred HHHHHhccCCCCeEEEecchHHHHHhcCC-----ceEEEEeCCCCceEEEEEE--CCEE-eecceeEecCchhHHHHHHH
Confidence 7664 566788889999999999998864 3679999999999886554 3322 22222235899999999999
Q ss_pred HHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc-----------eeeeeccccccCCCCCceeEEEecHHHHH
Q 005099 307 DWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT-----------QTNISLPFITATADGPKHIDTTLTRVKFE 375 (714)
Q Consensus 307 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~-----------~~~i~i~~~~~~~~g~~~~~~~itr~efe 375 (714)
+.|.+.- +..+... -+..++.+|+.++... ......++... ....+.|..+.|.
T Consensus 197 ~lL~~~~---~~~~~~~-------~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LP-----dg~~i~l~~er~~ 261 (380)
T PTZ00466 197 YLLRKNG---HLFNTSA-------EMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILP-----DGSQILIGSERYR 261 (380)
T ss_pred HHHHhcC---CCCCcHH-------HHHHHHHHHHhCeEecCChHHHHhhccccccceeEECC-----CCcEEEEchHHhc
Confidence 9886421 1111111 1234555666543211 00000111111 1134566666662
Q ss_pred ---HHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHHHhhcCC----C----CCcCCCCh
Q 005099 376 ---ELCSDLL-----DRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELVKKMTGR----E----PNVTVNPD 437 (714)
Q Consensus 376 ---~l~~~l~-----~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg~----~----~~~~~np~ 437 (714)
-++.|-+ ..+.+.|.+.+.++..+ +.-...|+|+||+|.+|.+.+.|++.+.. . +....++.
T Consensus 262 ~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~ 341 (380)
T PTZ00466 262 APEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERK 341 (380)
T ss_pred CcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCc
Confidence 2333321 14566777777765432 22347899999999999999999887732 1 22233455
Q ss_pred hHHHhHHHHHHh
Q 005099 438 EVVALGAAVQAG 449 (714)
Q Consensus 438 eaVA~GAa~~aa 449 (714)
.++=+|++++|.
T Consensus 342 ~~aW~GgSilas 353 (380)
T PTZ00466 342 FSTFIGGSILAS 353 (380)
T ss_pred eeEEECchhhcC
Confidence 566667777765
|
|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=124.43 Aligned_cols=204 Identities=17% Similarity=0.187 Sum_probs=129.3
Q ss_pred CcCeEEEEecCCCCHHHHHHHHHHHHHc---------CCCeeEEechhHHHHHHccccc----CCCceEEEEEeCCcceE
Q 005099 208 SVTKAVVTVPAYFNDSQRTATKDAGRIA---------GLDVLRIINEPTAASLAYGFEK----KNNETILVFDLGGGTFD 274 (714)
Q Consensus 208 ~v~~~VITVPa~f~~~qR~~l~~Aa~~A---------Gl~~~~li~Ep~AAAlay~~~~----~~~~~vLVvD~GgGT~D 274 (714)
.+..+|+..|..+...|++.+++...-. -+..+.+++||.+|.+.+..+. .....++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999999999999876532 2245788999999988876532 13567899999999999
Q ss_pred EEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccc
Q 005099 275 VSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPF 354 (714)
Q Consensus 275 vsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~ 354 (714)
+.++. +..+ +...++....|-.++-+.|.+.+.+++... ...+...+.. ..+.-|.. .+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~~----~~~~~~~i~~---~l~~g~~~---------~~-- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIGTP----AYRDIDRIDL---ALRTGKQP---------RI-- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcCCC----CccCHHHHHH---HHHhCCce---------ee--
Confidence 97764 4444 444555678999999999988888776432 0011111111 11111100 00
Q ss_pred cccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCC-CCCcC
Q 005099 355 ITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR-EPNVT 433 (714)
Q Consensus 355 ~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~-~~~~~ 433 (714)
+ + +. +.|+ +.++ .....++++...+.+.+. ...+++.|+|+||++. .+++.|++.|+. .+...
T Consensus 240 -~-g----k~--~di~-~~~~-~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~ 303 (320)
T TIGR03739 240 -Y-Q----KP--VDIK-RCLE-LAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEV 303 (320)
T ss_pred -c-c----ee--cCch-HHHH-HHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEec
Confidence 0 0 11 1121 1122 233333334333333332 1246889999999998 567889999975 34467
Q ss_pred CCChhHHHhHHHHHH
Q 005099 434 VNPDEVVALGAAVQA 448 (714)
Q Consensus 434 ~np~eaVA~GAa~~a 448 (714)
.||..|.|+|-..++
T Consensus 304 ~dp~~ANarG~~~~g 318 (320)
T TIGR03739 304 DEPMFANVRGFQIAG 318 (320)
T ss_pred CCcHHHHHHHHHHhh
Confidence 899999999987665
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.1e-11 Score=127.07 Aligned_cols=200 Identities=22% Similarity=0.316 Sum_probs=121.5
Q ss_pred HHHHHHHhhcCCCcCeEEE--------------------EecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHccc
Q 005099 196 KLVDDASKFLNDSVTKAVV--------------------TVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGF 255 (714)
Q Consensus 196 ~l~~~a~~~~~~~v~~~VI--------------------TVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~ 255 (714)
.+...+++++..++.++++ ++| ....+...++++.|||++..+=-+|.|.+-.|..
T Consensus 93 ~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~----k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~ 168 (340)
T PF11104_consen 93 AIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAP----KEIVESYVELFEEAGLKPVAVDVEAFALARLFEF 168 (340)
T ss_dssp HHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEE----HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHH
T ss_pred HHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEc----HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHH
Confidence 3455667777766655433 222 3456677889999999998887777776554433
Q ss_pred c------cCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHH
Q 005099 256 E------KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQ 329 (714)
Q Consensus 256 ~------~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~ 329 (714)
. ......++++|+|+.++.++++.-+...| .....+||.++++.|.+.+.-.
T Consensus 169 ~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f-----~R~i~~G~~~l~~~i~~~~~i~----------------- 226 (340)
T PF11104_consen 169 LEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF-----SRSIPIGGNDLTEAIARELGID----------------- 226 (340)
T ss_dssp HHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE-----EEEES-SHHHHHHHHHHHTT-------------------
T ss_pred HHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE-----EEEEeeCHHHHHHHHHHhcCCC-----------------
Confidence 2 11246899999999999999987443333 3346899999999998764322
Q ss_pred HHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCCEEE
Q 005099 330 RLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRD--AKLSFKDLDEVI 407 (714)
Q Consensus 330 rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~--a~~~~~~i~~Vv 407 (714)
..+||+.|..-+-.. +...+.+.+.++++..-|.+.++- .......|+.|+
T Consensus 227 --~~~Ae~~k~~~~l~~-------------------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~ 279 (340)
T PF11104_consen 227 --FEEAEELKRSGGLPE-------------------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIY 279 (340)
T ss_dssp --HHHHHHHHHHT-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEE
T ss_pred --HHHHHHHHhcCCCCc-------------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 356777776521000 223345556666666666666652 223346799999
Q ss_pred EEcCCCCchhHHHHHHhhcCCCCC---------cCC----------CChhHHHhHHHHHH
Q 005099 408 LVGGSTRIPAVQELVKKMTGREPN---------VTV----------NPDEVVALGAAVQA 448 (714)
Q Consensus 408 LvGGssrip~v~~~l~~~fg~~~~---------~~~----------np~eaVA~GAa~~a 448 (714)
|+||++++|.+.+.|.+.++.++. ... .|..++|.|.|+..
T Consensus 280 L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 280 LSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp EESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 999999999999999999986432 111 36788999999864
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.8e-09 Score=113.21 Aligned_cols=173 Identities=20% Similarity=0.336 Sum_probs=98.6
Q ss_pred CeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcccccc
Q 005099 238 DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDE 317 (714)
Q Consensus 238 ~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~ 317 (714)
..+.+++||.||.+.+..+..+...+||+|+||+|+|++++.- +.-.+....+...+|-..+-..+.+.|...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~----- 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRSA----- 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT-------
T ss_pred eeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHHh-----
Confidence 4568899999999998877555678999999999999998862 211222334446789988888887776552
Q ss_pred CCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 005099 318 GIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAK 397 (714)
Q Consensus 318 ~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~ 397 (714)
+... +......+.. .+. . ...+. ....+ . -..+++.++++..++++.+.|.+.+.+
T Consensus 214 ~~~~--s~~~~~~ii~----~~~---~--~~~~~--~~i~~----~-----~~~~~v~~~i~~~~~~l~~~i~~~~~~-- 269 (318)
T PF06406_consen 214 GIDT--SELQIDDIIR----NRK---D--KGYLR--QVIND----E-----DVIDDVSEVIEEAVEELINRILRELGD-- 269 (318)
T ss_dssp SBHH--HHHHHHHHHH----TTT------HHHHH--HHSSS----H-----HHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred cCCC--cHHHHHHHHH----hhh---c--cceec--ccccc----h-----hhHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 1111 1111111111 000 0 00000 00000 0 012344455555555555555555543
Q ss_pred CCCCCCCEEEEEcCCCCchhHHHHHHhhcC---CCCCcCCCChhHHHhHHH
Q 005099 398 LSFKDLDEVILVGGSTRIPAVQELVKKMTG---REPNVTVNPDEVVALGAA 445 (714)
Q Consensus 398 ~~~~~i~~VvLvGGssrip~v~~~l~~~fg---~~~~~~~np~eaVA~GAa 445 (714)
..+++.|+||||++. .+.+.|++.|+ ..+...-||+.|-|+|-+
T Consensus 270 --~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 --FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp --S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 346789999999985 56788888886 356678899999999964
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-08 Score=102.45 Aligned_cols=182 Identities=17% Similarity=0.206 Sum_probs=123.5
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEe----c----CCCEEecHHHHHhhhhCCCchHHHHhHhhC
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT----K----NGDRLVGQIAKRQAVVNPENTFFSVKRFIG 148 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~----~----~~~~~vG~~A~~~~~~~p~~~i~~~KrllG 148 (714)
..|-||.|+-.++++|....-|..+ +||++... . .+..+++..|...
T Consensus 12 ~alViDpGS~~traGyaged~Pk~i--------lPS~~G~~tk~~~d~~~~~~~y~~~~ai~~----------------- 66 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYAGEDSPKAI--------LPSVYGKVTKTDGDAEDKKGYYVDENAIHV----------------- 66 (426)
T ss_pred ceEEEeCCCceEeccccCCCCcccc--------ccceeeeeecccCccccccceEeechhccC-----------------
Confidence 5789999999999999988777766 68888752 1 1122444433110
Q ss_pred CCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHH
Q 005099 149 RKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTAT 228 (714)
Q Consensus 149 ~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l 228 (714)
+ +....|....+...+.--+++.++++|..+.-.+ .+..-.-++||-|++=+.+.|+.+
T Consensus 67 -p-------------------r~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~ 125 (426)
T KOG0679|consen 67 -P-------------------RPGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKL 125 (426)
T ss_pred -C-------------------CCCCeeccchhcCCcccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHH
Confidence 0 0111111111122334557778888887754322 233335689999999989999887
Q ss_pred HHH-HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHH
Q 005099 229 KDA-GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 307 (714)
Q Consensus 229 ~~A-a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~ 307 (714)
.+. .+...++...|+.+|+++|++.+. .+.||+|+|++++.++=+. +|.+--.+... ..+||+.++..+.+
T Consensus 126 ~ElmFE~~nvPAf~L~k~~v~~AFA~Gr-----stalVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~~~~~q 197 (426)
T KOG0679|consen 126 TELMFEKLNVPAFYLAKTAVCTAFANGR-----STALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLNDQCRQ 197 (426)
T ss_pred HHHHHhhcCCceEEEechHHHHHHhcCC-----CceEEEEecCCCceeeeee--cceEeeeeeEe-cccchHHHHHHHHH
Confidence 665 566678888999999999998874 4679999999999777553 44333333333 68999999999999
Q ss_pred HHHhc
Q 005099 308 WLASN 312 (714)
Q Consensus 308 ~l~~~ 312 (714)
.|..+
T Consensus 198 ~l~~~ 202 (426)
T KOG0679|consen 198 LLEPK 202 (426)
T ss_pred HHhhc
Confidence 98875
|
|
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-08 Score=102.55 Aligned_cols=170 Identities=16% Similarity=0.237 Sum_probs=105.4
Q ss_pred EEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCC
Q 005099 241 RIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGID 320 (714)
Q Consensus 241 ~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~ 320 (714)
..++|-+|-+.....-..+.+ .|+|+||..+-+..++ ++.+.-.........|+..|.+.+++.+-- +
T Consensus 73 ~~~~ei~~~~~g~~~~~~~~~--~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~--------~ 140 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAPEAR--GVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGV--------S 140 (248)
T ss_pred CceEEhhHHHHHHHHHCCCCC--EEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCC--------C
Confidence 357788776554433222222 5999999987776666 555443344555678888888888776532 2
Q ss_pred chhcHHHHHHHHHHHHHhhhhcCCC----ceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005099 321 LLKDKQALQRLTETAEKAKMELSSL----TQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDA 396 (714)
Q Consensus 321 ~~~~~~~~~rL~~~~e~aK~~Ls~~----~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a 396 (714)
.++++.+|..-... ....+..+.-.. ..+.-..+ .++++..+++.+...+.+.+...
T Consensus 141 -----------~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi-----~~l~~g~~---~~di~~~~~~~va~~i~~~~~~~ 201 (248)
T TIGR00241 141 -----------VEELGSLAEKADRKAKISSMCTVFAESELI-----SLLAAGVK---KEDILAGVYESIAERVAEMLQRL 201 (248)
T ss_pred -----------HHHHHHHHhcCCCCCCcCCEeEEEechhHH-----HHHHCCCC---HHHHHHHHHHHHHHHHHHHHhhc
Confidence 22344443331110 011111110000 00000112 34667777777777777766553
Q ss_pred CCCCCCCC-EEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHH
Q 005099 397 KLSFKDLD-EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAV 446 (714)
Q Consensus 397 ~~~~~~i~-~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~ 446 (714)
+ ++ .|+|+||.+++|.+.+.+.+.++.++..+.+|..+.|+|||+
T Consensus 202 ~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 202 K-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred C-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence 3 44 799999999999999999999999999999999999999997
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-07 Score=95.45 Aligned_cols=154 Identities=21% Similarity=0.302 Sum_probs=105.7
Q ss_pred HHHHHHHHHHcCCCeeEEechhHHHHHHccccc-----C-CCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCCh
Q 005099 225 RTATKDAGRIAGLDVLRIINEPTAASLAYGFEK-----K-NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGG 298 (714)
Q Consensus 225 R~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~-----~-~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG 298 (714)
.....+|++.|||+...+=-|..|.--+|..-. . ..-+++|+|+|+..+.+.++.-+...| ..+..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccCcH
Confidence 445678999999998877778888766665211 1 123479999999999999988665555 55688999
Q ss_pred hHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHH
Q 005099 299 DDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELC 378 (714)
Q Consensus 299 ~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~ 378 (714)
+++++.+.+.+- .+ ...++.+|.....-. +.-.++.
T Consensus 226 ~Qlt~~i~r~~~--------L~-----------~~~a~~~k~~~~~P~-------------------------~y~~~vl 261 (354)
T COG4972 226 DQLTQEIQRAYS--------LT-----------EEKAEEIKRGGTLPT-------------------------DYGSEVL 261 (354)
T ss_pred HHHHHHHHHHhC--------CC-----------hhHhHHHHhCCCCCC-------------------------chhHHHH
Confidence 999999876532 22 345667776533211 1112344
Q ss_pred HHHHHHHHHHHHHHH----HHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCC
Q 005099 379 SDLLDRLKTPVETSL----RDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRE 429 (714)
Q Consensus 379 ~~l~~~i~~~i~~~L----~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~ 429 (714)
.++++.+.+.|.+.| ... ...+|+.|+|.||++.+-.+.+.+.+.++.+
T Consensus 262 ~~f~~~l~~ei~Rslqfy~~~s--~~~~id~i~LaGggA~l~gL~~~i~qrl~~~ 314 (354)
T COG4972 262 RPFLGELTQEIRRSLQFYLSQS--EMVDIDQILLAGGGASLEGLAAAIQQRLSIP 314 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--ccceeeEEEEecCCcchhhHHHHHHHHhCCC
Confidence 444444444444444 444 3467999999999999999999999998753
|
|
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6e-07 Score=99.45 Aligned_cols=194 Identities=20% Similarity=0.216 Sum_probs=117.3
Q ss_pred EEEEEcCccceEEEEEECCeeEEE-eCCCCCcc-ceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhh
Q 005099 78 VVGIDLGTTNSAVAAMEGGKPTIV-TNAEGQRT-TPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVD 155 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~~~ii-~n~~g~~~-~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~ 155 (714)
.|-||.||-++++++..+..|..+ ++-.+.+. +.++..-...+...+|..+.....
T Consensus 8 ~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~---------------------- 65 (444)
T COG5277 8 TIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRD---------------------- 65 (444)
T ss_pred eEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccC----------------------
Confidence 389999999999999988778655 33333222 222222111223444444421100
Q ss_pred hhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHH-HhhcCCCcCeEEEEecCCCCHHHHHHHHH-HHH
Q 005099 156 EESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDA-SKFLNDSVTKAVVTVPAYFNDSQRTATKD-AGR 233 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a-~~~~~~~v~~~VITVPa~f~~~qR~~l~~-Aa~ 233 (714)
.....+..+.+...+.--+....+++++...- .......-..+++|-|..+...+|+.+.+ ..+
T Consensus 66 --------------~~~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE 131 (444)
T COG5277 66 --------------NSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFE 131 (444)
T ss_pred --------------CccceeecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHH
Confidence 00111222222222333344455555555442 11111222479999999999999988765 456
Q ss_pred HcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 005099 234 IAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 313 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~ 313 (714)
...+.-+.+..++.++.++.+... .+.+|+|+|.+.++|+=+-- |.. +.....-..+||++++..|.+.|....
T Consensus 132 ~~~vp~~~~~~~~~l~~ya~g~~~---~~g~ViD~G~~~t~v~PV~D--G~~-l~~a~~ri~~gG~~it~~l~~lL~~~~ 205 (444)
T COG5277 132 TLNVPALYLAIQAVLSLYASGSSD---ETGLVIDSGDSVTHVIPVVD--GIV-LPKAVKRIDIGGRDITDYLKKLLREKY 205 (444)
T ss_pred hcCCcceEeeHHHHHHHHhcCCCC---CceEEEEcCCCceeeEeeec--ccc-ccccceeeecCcHHHHHHHHHHHhhcc
Confidence 667788888888888888877653 47899999999998875542 221 122223368999999999999998853
|
|
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-05 Score=94.62 Aligned_cols=271 Identities=18% Similarity=0.265 Sum_probs=163.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCC--------------CcCeEEEEecCCCCHHHHHHHHHHHHHc--------CCC--
Q 005099 183 QFAAEEISAQVLRKLVDDASKFLND--------------SVTKAVVTVPAYFNDSQRTATKDAGRIA--------GLD-- 238 (714)
Q Consensus 183 ~~~~eev~a~~L~~l~~~a~~~~~~--------------~v~~~VITVPa~f~~~qR~~l~~Aa~~A--------Gl~-- 238 (714)
.||=..++.++|..|..+|.-+.+. ....+++|||......+|+.++++++.| |+.
T Consensus 416 ~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~~ 495 (1002)
T PF07520_consen 416 HYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHPW 495 (1002)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4666788888888888888765553 3457999999999999999999888775 431
Q ss_pred -------------------eeEEechhHHHHHHcccc---------------------cC--------CCceEEEEEeCC
Q 005099 239 -------------------VLRIINEPTAASLAYGFE---------------------KK--------NNETILVFDLGG 270 (714)
Q Consensus 239 -------------------~~~li~Ep~AAAlay~~~---------------------~~--------~~~~vLVvD~Gg 270 (714)
+..=-+|.||.-+-|++. .. +.-+|.-+|+||
T Consensus 496 ~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIGG 575 (1002)
T PF07520_consen 496 DDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIGG 575 (1002)
T ss_pred CCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecCC
Confidence 111236777765555432 00 024689999999
Q ss_pred cceEEEEEEEc----Cc-eEEE----EEecCCCCCChhHHHHHHHHH-HHhcccc----------------ccCCCchh-
Q 005099 271 GTFDVSVLEVG----DG-VFEV----LSTSGDTHLGGDDFDKRIVDW-LASNFKR----------------DEGIDLLK- 323 (714)
Q Consensus 271 GT~Dvsv~~~~----~~-~~~v----l~~~gd~~lGG~d~D~~l~~~-l~~~~~~----------------~~~~~~~~- 323 (714)
||||+.|-.+. .+ ...+ +-..| -.+.|+||=..+++. +...+.. -+|.+-..
T Consensus 576 GTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg~~~ 654 (1002)
T PF07520_consen 576 GTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDGQSD 654 (1002)
T ss_pred CcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcchhH
Confidence 99999987765 22 1212 12234 578888886665543 3322221 11211000
Q ss_pred cHH-------------HHHHHHHHHHHhhhh-------------cCCCceeeeeccccccCC----CC-----CceeEEE
Q 005099 324 DKQ-------------ALQRLTETAEKAKME-------------LSSLTQTNISLPFITATA----DG-----PKHIDTT 368 (714)
Q Consensus 324 ~~~-------------~~~rL~~~~e~aK~~-------------Ls~~~~~~i~i~~~~~~~----~g-----~~~~~~~ 368 (714)
..+ ...+++.++|..-.. |.......--++++.... .| -.++.+.
T Consensus 655 ~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdildv~l~ 734 (1002)
T PF07520_consen 655 QDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILDVPLE 734 (1002)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceecceEE
Confidence 000 112355666654321 110000000001111000 11 1345678
Q ss_pred ecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCC--------------
Q 005099 369 LTRVKFEELCS---DLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN-------------- 431 (714)
Q Consensus 369 itr~efe~l~~---~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~-------------- 431 (714)
|+..++...+- -.+.+++..+-+++.. .+.|.++|+|--||+|.||..+++....++.
T Consensus 735 i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~-----Y~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~tg~WY 809 (1002)
T PF07520_consen 735 IDLEKLHAAFLSDRMVICKTLRALCEVVHH-----YDCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRTGNWY 809 (1002)
T ss_pred EcHHHHHHHHHhCcccHHHHHHHHHHHHHH-----hCCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeeecccc
Confidence 89999998774 5666666666666666 4467899999999999999999999865433
Q ss_pred ------cCCCChhHHHhHHHHHHhHhhCCCCCcE
Q 005099 432 ------VTVNPDEVVALGAAVQAGVLAGDVSDIV 459 (714)
Q Consensus 432 ------~~~np~eaVA~GAa~~aa~ls~~~~~~~ 459 (714)
..-||...||.||.+.+.......+++.
T Consensus 810 PF~~~~rI~dPKTTaaVGAmLc~La~~lrL~nF~ 843 (1002)
T PF07520_consen 810 PFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPNFY 843 (1002)
T ss_pred cCCCCCcCCCchHHHHHHHHHHHHhccCCCCCce
Confidence 2349999999999876654332344443
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=95.63 Aligned_cols=83 Identities=22% Similarity=0.303 Sum_probs=60.8
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHH------------cCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEE
Q 005099 210 TKAVVTVPAYFNDSQRTATKDAGRI------------AGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSV 277 (714)
Q Consensus 210 ~~~VITVPa~f~~~qR~~l~~Aa~~------------AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv 277 (714)
.-.+||.+...- +.++++++. ||+++..++. |.|++.+...+ ..+..++++|+||||+++++
T Consensus 89 ~ahIITg~~~~~----~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-Eke~gVa~IDIGgGTT~iaV 162 (475)
T PRK10719 89 GAVIITGETARK----ENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-ERNTRVLNIDIGGGTANYAL 162 (475)
T ss_pred cEEEEEechhHH----HHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-hccCceEEEEeCCCceEEEE
Confidence 356888877654 445555554 6777777766 99999888754 56889999999999999999
Q ss_pred EEEcCceEEEEEecCCCCCChhHHHH
Q 005099 278 LEVGDGVFEVLSTSGDTHLGGDDFDK 303 (714)
Q Consensus 278 ~~~~~~~~~vl~~~gd~~lGG~d~D~ 303 (714)
+.-+.-.+ .++..+||+.++.
T Consensus 163 f~~G~l~~-----T~~l~vGG~~IT~ 183 (475)
T PRK10719 163 FDAGKVID-----TACLNVGGRLIET 183 (475)
T ss_pred EECCEEEE-----EEEEecccceEEE
Confidence 98554333 4557899987654
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-05 Score=81.54 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCC-cCCCChhHHHhHHHHHHhH
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN-VTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~-~~~np~eaVA~GAa~~aa~ 450 (714)
+++.-+...+...+...++..++. ..|+|+||.++.|.+++.+++.++.++. .+.+|+.+-|+|||++|..
T Consensus 217 dI~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 217 MVIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 344445555554444444443322 3689999999999999999999998877 5778999999999999864
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-05 Score=83.74 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 374 FEELCSDLLDRLKTPVET-SLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 374 fe~l~~~l~~~i~~~i~~-~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
.|+++..+...+.+-+-. +++...+. + -|+|+||.+....+.+++.+.++.++.++.+|+..-|+|||+++..
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i~--~--~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDIE--E--PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC--C--CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 566677777666655544 55553332 2 2999999999999999999999999999999999999999999864
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-05 Score=84.64 Aligned_cols=71 Identities=25% Similarity=0.355 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHh
Q 005099 375 EELCSDLLDRLKTPVET-SLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~-~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa 449 (714)
++++.-+...+.+.+.. +++..++ -+.|+++||.++.+.+.+.+.+.++.++..+.+|+.+-|+|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i----~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDV----REPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC----CCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 34444555555544442 3444332 23599999999999999999999999999999999999999999985
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.5e-06 Score=86.91 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcC-----CCCCcCCCChhHHHhHHHHHH
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTG-----REPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg-----~~~~~~~np~eaVA~GAa~~a 448 (714)
+++.-+...+...+...+.+.. ..-..|+|+||.++.+.+.+.|++.++ .++..+.+|+.+-|+|||++|
T Consensus 358 DIaAGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 358 DILAGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 4444555555555555555431 112469999999999999999999994 557788999999999999975
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >KOG0676 consensus Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.9e-05 Score=83.34 Aligned_cols=210 Identities=19% Similarity=0.249 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCC
Q 005099 191 AQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGG 270 (714)
Q Consensus 191 a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~Gg 270 (714)
..+..|+...-.... .....+++|-|..+....|+.+-+..-.. |++..+.-.-.|..++++.. +=+|+|+|.
T Consensus 82 e~iw~~if~~~L~~~-Pee~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yva~qavlya~g~t-----tG~VvD~G~ 154 (372)
T KOG0676|consen 82 EKIWHHLFYSELLVA-PEEHPVLLTEPPLNPKANREKLTQIMFET-FNVPALYVAIQAVLYASGRT-----TGLVVDSGD 154 (372)
T ss_pred HHHHHHHHHHhhccC-cccCceEeecCCCCchHhHHHHHHHhhhh-cCccHhHHHHHHHHHHcCCe-----eEEEEEcCC
Confidence 566666652222211 22257999999999999999887764432 34443332224434344433 459999999
Q ss_pred cceE-EEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc---
Q 005099 271 GTFD-VSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT--- 346 (714)
Q Consensus 271 GT~D-vsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~--- 346 (714)
|-++ +-+++ | +.+...-....+||+|++..|...|.+. +........ ++-++.+|+.++...
T Consensus 155 gvt~~vPI~e---G-~~lp~ai~~ldl~G~dlt~~l~~~L~~~-----g~s~~~~~~-----~eIv~diKeklCyvald~ 220 (372)
T KOG0676|consen 155 GVTHVVPIYE---G-YALPHAILRLDLAGRDLTDYLLKQLRKR-----GYSFTTSAE-----FEIVRDIKEKLCYVALDF 220 (372)
T ss_pred Cceeeeeccc---c-cccchhhheecccchhhHHHHHHHHHhc-----ccccccccH-----HHHHHHhHhhhccccccc
Confidence 9664 44544 2 2233334457899999999888777761 111111100 122444454443211
Q ss_pred ---------eeeeeccccccCCCCCceeEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHc--CCCCCCCCEEE
Q 005099 347 ---------QTNISLPFITATADGPKHIDTTLTRVKFE---ELCSDLL-----DRLKTPVETSLRDA--KLSFKDLDEVI 407 (714)
Q Consensus 347 ---------~~~i~i~~~~~~~~g~~~~~~~itr~efe---~l~~~l~-----~~i~~~i~~~L~~a--~~~~~~i~~Vv 407 (714)
...+... +.-.+|.. +++.-+.|. -+++|-+ ..+.+.+-+.+.++ ++.+.-...|+
T Consensus 221 ~~e~~~~~~~~~l~~~--y~lPDg~~---i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~niv 295 (372)
T KOG0676|consen 221 EEEEETANTSSSLESS--YELPDGQK---ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIV 295 (372)
T ss_pred chhhhccccccccccc--ccCCCCCE---EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheE
Confidence 1111111 11112211 344333322 2222221 22333333433333 23333446899
Q ss_pred EEcCCCCchhHHHHHHhhc
Q 005099 408 LVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 408 LvGGssrip~v~~~l~~~f 426 (714)
|+||++.+|.+-+.|.+..
T Consensus 296 LsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 296 LSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred EeCCcccchhHHHHHHHHH
Confidence 9999999999999888765
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00091 Score=68.81 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCC-C----CCcCCCChhHHHhHHHHHH
Q 005099 375 EELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR-E----PNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~-~----~~~~~np~eaVA~GAa~~a 448 (714)
++++.-+...+.+.+...++..+.. -+.|+|+||.++.+.+.+.|++.++. + +..+.+|+.+-|+|||++|
T Consensus 187 edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 3445555555555555555543311 13599999999999999999998842 3 4456688999999999975
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0011 Score=69.48 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=42.7
Q ss_pred CCCEEEEEc-CCCCchhHHHHHHhhc---CCCCCcCCCChhHHHhHHHHHHh
Q 005099 402 DLDEVILVG-GSTRIPAVQELVKKMT---GREPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 402 ~i~~VvLvG-Gssrip~v~~~l~~~f---g~~~~~~~np~eaVA~GAa~~aa 449 (714)
.++.|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456899999 7999999999999888 56788899999999999999875
|
|
| >KOG0797 consensus Actin-related protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00034 Score=75.96 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=105.9
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCcC-----eEEEEecCCCCHHHHHHHHH-HHHHcCCCeeEEechhHHHHHHcc
Q 005099 181 GKQFAAEEISAQVLRKLVDDASKFLNDSVT-----KAVVTVPAYFNDSQRTATKD-AGRIAGLDVLRIINEPTAASLAYG 254 (714)
Q Consensus 181 ~~~~~~eev~a~~L~~l~~~a~~~~~~~v~-----~~VITVPa~f~~~qR~~l~~-Aa~~AGl~~~~li~Ep~AAAlay~ 254 (714)
...++..++++++-+-+.-..++.+..+.+ .+|+-||-.|.....+.+.. .....||.-..++-|+.||.+..|
T Consensus 194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG 273 (618)
T KOG0797|consen 194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG 273 (618)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC
Confidence 345677888777665555555556665544 68999999999877665544 466789999999999999998887
Q ss_pred cccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc-cccccCCCchhcHHHHHHHHH
Q 005099 255 FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN-FKRDEGIDLLKDKQALQRLTE 333 (714)
Q Consensus 255 ~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~-~~~~~~~~~~~~~~~~~rL~~ 333 (714)
+. .-.|||+|+-+|.|+.++ +|+. +..+.-....||+||++.|+-++... |. ....++.. +-. +.
T Consensus 274 ls-----s~CVVdiGAQkTsIaCVE--dGvs-~~ntri~L~YGGdDitr~f~~ll~rs~FP-y~d~~v~~-~~d----~l 339 (618)
T KOG0797|consen 274 LS-----SACVVDIGAQKTSIACVE--DGVS-LPNTRIILPYGGDDITRCFLWLLRRSGFP-YQDCDVLA-PID----WL 339 (618)
T ss_pred cc-----ceeEEEccCcceeEEEee--cCcc-ccCceEEeccCCchHHHHHHHHHHhcCCC-cccccccc-ccc----HH
Confidence 75 458999999999888776 3321 22223336789999999998877652 21 11122222 111 33
Q ss_pred HHHHhhhhcCCCceee
Q 005099 334 TAEKAKMELSSLTQTN 349 (714)
Q Consensus 334 ~~e~aK~~Ls~~~~~~ 349 (714)
-++++|+.++.-....
T Consensus 340 Ll~~LKe~Fc~l~~a~ 355 (618)
T KOG0797|consen 340 LLNQLKEKFCHLRAAE 355 (618)
T ss_pred HHHHHHHHhccccHhh
Confidence 4678888888665443
|
|
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00045 Score=70.03 Aligned_cols=194 Identities=20% Similarity=0.237 Sum_probs=103.9
Q ss_pred HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHh
Q 005099 232 GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 311 (714)
Q Consensus 232 a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~ 311 (714)
-+..|.++..-=-|+.+|.+........+..+.++|+|||++|.+++.-++. +.-+.-+| .|+-++..|...
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~-v~~iHlAG----AG~mVTmlI~sE--- 176 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGE-VTAIHLAG----AGNMVTMLINSE--- 176 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHHHH---
T ss_pred HHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCc-EEEEEecC----CchhhHHHHHHh---
Confidence 3456888888888999999999888777788999999999999999986554 32222222 345445444322
Q ss_pred ccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeec-------ccccc----C---------CCCCceeEEEecH
Q 005099 312 NFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISL-------PFITA----T---------ADGPKHIDTTLTR 371 (714)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i-------~~~~~----~---------~~g~~~~~~~itr 371 (714)
.+++- +.-||.+|+---..-+..+.+ .++.. . .++...+...++-
T Consensus 177 -----LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~l 241 (332)
T PF08841_consen 177 -----LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSL 241 (332)
T ss_dssp -----CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-H
T ss_pred -----hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccH
Confidence 23211 456777776421111110100 00000 0 0111112222233
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHcC--CCCCCCCEEEEEcCCCCchhHHHHHHhhcCC--------CCCcCCCChhHH
Q 005099 372 VKFEELCSDLLDRL-KTPVETSLRDAK--LSFKDLDEVILVGGSTRIPAVQELVKKMTGR--------EPNVTVNPDEVV 440 (714)
Q Consensus 372 ~efe~l~~~l~~~i-~~~i~~~L~~a~--~~~~~i~~VvLvGGssrip~v~~~l~~~fg~--------~~~~~~np~eaV 440 (714)
+++..+=...=+++ ..-..++|++.. -...+|+.|+|||||+.=.-|-+++.+.+.. ++.-..-|..||
T Consensus 242 Ekir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAV 321 (332)
T PF08841_consen 242 EKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAV 321 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHH
Confidence 34433322222221 112233444321 2346789999999999988888888888732 344456799999
Q ss_pred HhHHHHHH
Q 005099 441 ALGAAVQA 448 (714)
Q Consensus 441 A~GAa~~a 448 (714)
|.|.++.-
T Consensus 322 ATGLvlsy 329 (332)
T PF08841_consen 322 ATGLVLSY 329 (332)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998653
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.021 Score=64.13 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=57.9
Q ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCC-------------
Q 005099 365 IDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN------------- 431 (714)
Q Consensus 365 ~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~------------- 431 (714)
+.+.|.-.++++.+-.-=-.+...+..+.+..+ -.+.|.++|+|--+|+|.||..++.....++.
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn--~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~W 820 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAIN--HYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTW 820 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHh--hhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccce
Confidence 335566666665443220023333333333322 24567899999999999999999887654332
Q ss_pred -------cCCCChhHHHhHHHHHHhHhhCCCCCcE
Q 005099 432 -------VTVNPDEVVALGAAVQAGVLAGDVSDIV 459 (714)
Q Consensus 432 -------~~~np~eaVA~GAa~~aa~ls~~~~~~~ 459 (714)
+..||...+|.||-+.+..+.-....+.
T Consensus 821 YPF~k~grIddPKtTAaVGAMLC~Lsl~~rl~nF~ 855 (1014)
T COG4457 821 YPFRKQGRIDDPKTTAAVGAMLCALSLELRLPNFY 855 (1014)
T ss_pred ecccccCcCCCcchHHHHHHHHHHHHhhccCccee
Confidence 2348999999999887766554444443
|
|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.007 Score=66.69 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=53.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEe---chhHHHHHHcc---cccCCCceEEEEEeCCcceEEEEEEEcCce
Q 005099 211 KAVVTVPAYFNDSQRTATKDAGRIAGLDVLRII---NEPTAASLAYG---FEKKNNETILVFDLGGGTFDVSVLEVGDGV 284 (714)
Q Consensus 211 ~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li---~Ep~AAAlay~---~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~ 284 (714)
-++||==+--.+..|..+...+..||==|+.-. -|+.-|+-..+ +..+....|+=+|+||||+.+++++-++
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~-- 164 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGE-- 164 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCE--
Confidence 356666666667777777777777773332211 24444433222 2233468899999999999999988542
Q ss_pred EEEEEecCCCCCChhH
Q 005099 285 FEVLSTSGDTHLGGDD 300 (714)
Q Consensus 285 ~~vl~~~gd~~lGG~d 300 (714)
++++ ++.++||+-
T Consensus 165 --v~~T-~cl~IGGRL 177 (473)
T PF06277_consen 165 --VIDT-ACLDIGGRL 177 (473)
T ss_pred --EEEE-EEEeeccEE
Confidence 3343 347899974
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.28 Score=51.28 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc-----CCCCCcCCCChhHHHhHHHHHH
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT-----GREPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f-----g~~~~~~~np~eaVA~GAa~~a 448 (714)
++++...+.+.+.+..++.+....... |+|+||......+++.+++.+ ..++.....|....|.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 445555556666666666665433222 999999999977777775555 2345567889999999999986
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0026 Score=63.15 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 374 FEELCSDLLDRLKTPVETSLRDAKLS-FKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 374 fe~l~~~l~~~i~~~i~~~L~~a~~~-~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
..+++.-+++.+.-.++..++...-. ...++.|+++||.++.+.+.+++.+.|+.++....+ .++.|+|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 44555666666655555555543111 244889999999999999999999999988766555 89999999999874
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.065 Score=53.89 Aligned_cols=195 Identities=18% Similarity=0.249 Sum_probs=116.0
Q ss_pred cCeEEEEecCCCCHHHHHHHHHH-HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEE
Q 005099 209 VTKAVVTVPAYFNDSQRTATKDA-GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEV 287 (714)
Q Consensus 209 v~~~VITVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~v 287 (714)
-.++.+|-|.--....|+.|-+. .+..||.-+.+.-...-+.++-++- +=+|+|-|.|-+-+.=+. .+ +..
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~-----tGvVvDSGDGVTHi~PVy--e~-~~l 172 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL-----TGVVVDSGDGVTHIVPVY--EG-FVL 172 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc-----ceEEEecCCCeeEEeeee--cc-eeh
Confidence 34789999999888889988775 5667888776655555444444443 338999999988765332 11 111
Q ss_pred EEecCCCCCChhHHHHHHHHHHHhc-cccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc-----------eeeeecccc
Q 005099 288 LSTSGDTHLGGDDFDKRIVDWLASN-FKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT-----------QTNISLPFI 355 (714)
Q Consensus 288 l~~~gd~~lGG~d~D~~l~~~l~~~-~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~-----------~~~i~i~~~ 355 (714)
-.-.+-..+.|+|+++-|.+++..+ |.-....| .+..+..|+.|+-.. ++++-++..
T Consensus 173 ~HLtrRldvAGRdiTryLi~LLl~rGYafN~tAD-----------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 173 PHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTAD-----------FETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred hhhhhhccccchhHHHHHHHHHHhhccccccccc-----------hHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 1113345789999999999988764 11111112 233445555554211 112211111
Q ss_pred ccCCCCCceeEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCCC--CCCEEEEEcCCCCchhHHHHHHhh
Q 005099 356 TATADGPKHIDTTLTRVKFE---ELCSDLL-----DRLKTPVETSLRDAKLSFK--DLDEVILVGGSTRIPAVQELVKKM 425 (714)
Q Consensus 356 ~~~~~g~~~~~~~itr~efe---~l~~~l~-----~~i~~~i~~~L~~a~~~~~--~i~~VvLvGGssrip~v~~~l~~~ 425 (714)
. -. ..-.+.+-.+.|| .+++|-+ ..+.+++-++++.+.++.. --.+|+|.||++.-|.+.+.|.+.
T Consensus 242 t-LP---DGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkE 317 (389)
T KOG0677|consen 242 T-LP---DGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKE 317 (389)
T ss_pred e-cC---CCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHH
Confidence 1 00 1123455555554 4556543 2456777778887665422 126999999999999998887765
Q ss_pred c
Q 005099 426 T 426 (714)
Q Consensus 426 f 426 (714)
+
T Consensus 318 l 318 (389)
T KOG0677|consen 318 L 318 (389)
T ss_pred H
Confidence 4
|
|
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.015 Score=66.42 Aligned_cols=79 Identities=22% Similarity=0.279 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
.++.-+++.+.-.++..++...-....++.|+++||+++++...+++.+.||.++....+.+++.|+|||+.|+.-.|.
T Consensus 360 ~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~ 438 (484)
T PRK15027 360 ELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANP 438 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHHHHhcCC
Confidence 3344444444444444333321111347899999999999999999999999999776677778999999999875543
|
|
| >KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.57 Score=48.93 Aligned_cols=96 Identities=18% Similarity=0.211 Sum_probs=55.4
Q ss_pred CeEEEEecCCCCHHHHHHHHH-HHHHcCCCeeEEechhHHHHHHcc---cccCC-----CceEEEEEeCCcceEEEEEEE
Q 005099 210 TKAVVTVPAYFNDSQRTATKD-AGRIAGLDVLRIINEPTAASLAYG---FEKKN-----NETILVFDLGGGTFDVSVLEV 280 (714)
Q Consensus 210 ~~~VITVPa~f~~~qR~~l~~-Aa~~AGl~~~~li~Ep~AAAlay~---~~~~~-----~~~vLVvD~GgGT~Dvsv~~~ 280 (714)
..+|+|=|.+--++-.+.+.+ ..+.-+++- +..-+.|+.+++- .+..+ ....||+|-|-+-|-+.= +
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip--~ 169 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIP--V 169 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEeh--h
Confidence 478999998755544444433 445556654 3444444444443 22222 458999999998765432 2
Q ss_pred cCceEEEEEecCCCCCChhHHHHHHHHHHH
Q 005099 281 GDGVFEVLSTSGDTHLGGDDFDKRIVDWLA 310 (714)
Q Consensus 281 ~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~ 310 (714)
-++.....+... ..+||..++..|.+++-
T Consensus 170 v~g~~~~qaV~R-iDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 170 VKGIPYYQAVKR-IDVGGKALTNLLKETIS 198 (400)
T ss_pred hcCcchhhceEE-eecchHHHHHHHHHHhh
Confidence 222211112122 57999999999988764
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.026 Score=65.24 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHh
Q 005099 370 TRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 370 tr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa 449 (714)
+|..+..++.-+++.+.-.++.+++...-....++.|.++||.++++...+.+.+.+|.++.+..++ ++.++|||+.|+
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~ 489 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVN-EAVLHGAAMLGA 489 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChh-HHHHHHHHHHHH
Confidence 5677778888888877766666665542112357899999999999999999999999988766555 578999999998
Q ss_pred HhhC
Q 005099 450 VLAG 453 (714)
Q Consensus 450 ~ls~ 453 (714)
.-.+
T Consensus 490 ~~~G 493 (541)
T TIGR01315 490 KAAG 493 (541)
T ss_pred HhcC
Confidence 7444
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.1 Score=58.28 Aligned_cols=218 Identities=20% Similarity=0.202 Sum_probs=119.7
Q ss_pred HHHHHHHHHcCCCe----eEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEc-------CceEEEEEecCCC
Q 005099 226 TATKDAGRIAGLDV----LRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVG-------DGVFEVLSTSGDT 294 (714)
Q Consensus 226 ~~l~~Aa~~AGl~~----~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~-------~~~~~vl~~~gd~ 294 (714)
..+.++|+..||.. ..-+-+.-|.++..+... .+-|++=+|-+|+++.+-+-. +.....+-...-.
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~---~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~ 308 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ---PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWL 308 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccCC---CCeEEEEeccceEEEEecCCceecCccccccccccCcchhh
Confidence 35667788888743 222223334333333221 334556578888887765532 1122222223334
Q ss_pred CCChhHHHHHHHHHHHhcccc---------ccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCC---C
Q 005099 295 HLGGDDFDKRIVDWLASNFKR---------DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG---P 362 (714)
Q Consensus 295 ~lGG~d~D~~l~~~l~~~~~~---------~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g---~ 362 (714)
.-||..-.=.|++||.+...- +++.++. .....++..-+++.+...+-... .+-++.+.-+ .. +
T Consensus 309 ~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GN-RsP~aD 384 (544)
T COG1069 309 YEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--ESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGN-RSPLAD 384 (544)
T ss_pred hcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--HHHHHHHHHHHhhHhccCcccCC-cEecccccCC-cCCCCC
Confidence 557777777888888876421 1111111 11233444445555555432221 1112211110 00 0
Q ss_pred ce-------eEEEecHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCc
Q 005099 363 KH-------IDTTLTRVKFEELCSDLLDRLKT---PVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNV 432 (714)
Q Consensus 363 ~~-------~~~~itr~efe~l~~~l~~~i~~---~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~ 432 (714)
.+ +++.=+.+.+-.+..-.++-+.- .|-+++++.+ -.|+.|+.+||-.+.|.+.+.+.+..|+++..
T Consensus 385 p~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g---~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i 461 (544)
T COG1069 385 PRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQG---IAIDTLFASGGIRKNPLLMQLYADVTGRPVVI 461 (544)
T ss_pred ccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcC---CeeeEEEecCCcccCHHHHHHHHHhcCCeEEe
Confidence 11 12222344444555555554433 3334444555 46899999999999999999999999988776
Q ss_pred CCCChhHHHhHHHHHHhHhhCC
Q 005099 433 TVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 433 ~~np~eaVA~GAa~~aa~ls~~ 454 (714)
. ..++++++|+|+.++.-.+.
T Consensus 462 ~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 462 P-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred e-cccchhhhHHHHHHHHHhcc
Confidence 6 77899999999999875543
|
|
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.031 Score=64.70 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
+++-+++.+.-.++..++..+.. ..++.|+++||+|+.+.+.+.+.+.||.++.+...+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHHH
Confidence 45555555555555555554432 457899999999999999999999999987665555 6889999999985
|
|
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.22 Score=52.08 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=39.5
Q ss_pred CCCCEEEEEcC-CCCchhHHHHHHhhc---CCCCCcCCCChhHHHhHHHH
Q 005099 401 KDLDEVILVGG-STRIPAVQELVKKMT---GREPNVTVNPDEVVALGAAV 446 (714)
Q Consensus 401 ~~i~~VvLvGG-ssrip~v~~~l~~~f---g~~~~~~~np~eaVA~GAa~ 446 (714)
..+..|+++|| .+..|.+++.+...+ +.+...+.|+...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45789999999 678999999998877 45677788999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.3 Score=54.26 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=73.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCC---c-CeEEEEecCCCCHHHHHHHHHH-HHHcCCCeeEEechhHHHHHHccccc
Q 005099 183 QFAAEEISAQVLRKLVDDASKFLNDS---V-TKAVVTVPAYFNDSQRTATKDA-GRIAGLDVLRIINEPTAASLAYGFEK 257 (714)
Q Consensus 183 ~~~~eev~a~~L~~l~~~a~~~~~~~---v-~~~VITVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAlay~~~~ 257 (714)
.++--++...+|.|+..+ +|.. + ..+++|-+..=...+|+.|-+. .+.-|++-+.+=-+..=+.+. ....
T Consensus 90 VvtNwel~E~ilDY~F~~----LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h-N~~~ 164 (645)
T KOG0681|consen 90 VVTNWELMEQILDYIFGK----LGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH-NYGK 164 (645)
T ss_pred ccccHHHHHHHHHHHHHh----cCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh-ccCc
Confidence 344556666666665543 3322 2 3578888777667788887665 455687765442222222211 1111
Q ss_pred CCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccc
Q 005099 258 KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 314 (714)
Q Consensus 258 ~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~ 314 (714)
..+..-||+++|..+|-|-.+- +|.. ++....-.++||.....-|.+++..+|.
T Consensus 165 ~~~~~~liis~g~~~T~vipvl--dG~~-il~~~kRiN~GG~qa~dYL~~Lmq~Kyp 218 (645)
T KOG0681|consen 165 SSNKSGLIISMGHSATHVIPVL--DGRL-ILKDVKRINWGGYQAGDYLSRLMQLKYP 218 (645)
T ss_pred ccCcceEEEecCCCcceeEEEe--cCch-hhhcceeeccCcchHHHHHHHHHhccCc
Confidence 2245789999999998765544 3332 1222334789999988888888777654
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.043 Score=49.95 Aligned_cols=62 Identities=29% Similarity=0.438 Sum_probs=34.9
Q ss_pred EEEEEeCCcceEEEEEEEcC-ceEEEEEecCCCCCC--hhHHH--HHHHHHHHhccccccCCCchhcHHHHHHHHHHHHH
Q 005099 263 ILVFDLGGGTFDVSVLEVGD-GVFEVLSTSGDTHLG--GDDFD--KRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEK 337 (714)
Q Consensus 263 vLVvD~GgGT~Dvsv~~~~~-~~~~vl~~~gd~~lG--G~d~D--~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~ 337 (714)
++++|+|++++.+.+++... +.++++........| +.+|. +.+.+-+.. -.+++|+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~-------------------a~~~AE~ 61 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKI-------------------AIEEAER 61 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT---------------------HHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHH-------------------HHHHHHH
Confidence 68999999999999999843 445555432111111 66666 555544433 2556777
Q ss_pred h-hhhcC
Q 005099 338 A-KMELS 343 (714)
Q Consensus 338 a-K~~Ls 343 (714)
. |..+.
T Consensus 62 ~~k~~i~ 68 (120)
T PF14450_consen 62 LAKCEIG 68 (120)
T ss_dssp H-HHHH-
T ss_pred HhCCeee
Confidence 7 77654
|
|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.056 Score=61.88 Aligned_cols=78 Identities=24% Similarity=0.262 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 375 EELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
..++.-+++.+.-.++..++... .....++.|.++||.++++...+++.+.||.++.... ..++.|+|||+.|+.-.|
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhcC
Confidence 34455555555544444444332 1112478999999999999999999999999886554 456889999999987544
|
|
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.059 Score=61.32 Aligned_cols=78 Identities=24% Similarity=0.360 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 375 EELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
+.++.-+++.+.-.++..++... .....++.|+++||.++.+.+.+++.+.||.++.... ..++.++|||+.|+.-.+
T Consensus 362 ~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALG 440 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcC
Confidence 33444555544444444443321 1113478999999999999999999999999876554 666889999999987554
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.06 Score=61.73 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKL-SFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~-~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
.++.-+++.+.-.++..++...- ....++.|.++||.++++.+.+++.+.||.++.... ..++.|+|||+.|+.-.|.
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcCc
Confidence 34455555555444444443211 012378999999999999999999999999886655 4457899999999875553
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.053 Score=62.00 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
.++.-+++.+.-.++..++... .....++.|.++||.++++...+++.+.||.++.... ..++.|+|||+.|+.-.|
T Consensus 372 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~-~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 372 HIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVPVVRPK-VTETTALGAAYAAGLAVG 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcCCeeEecC-CCcchHHHHHHHHHhhcC
Confidence 3444555555444444444321 1123478999999999999999999999999886644 457889999999987544
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.06 Score=61.08 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 375 EELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
..++.-+++.+.-.++..++... .....++.|.++||++++|...+.+.+.||.++.+..++ ++.++|||+.|+.-.+
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~-e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDA-ETTVAGAAMFGFYGVG 443 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCC-cchHHHHHHHHHHhcC
Confidence 34555556655544444443321 111247899999999999999999999999988666654 6789999999987544
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.059 Score=62.50 Aligned_cols=77 Identities=25% Similarity=0.330 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCC-CCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGS-TRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGs-srip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
+++.-+++.+.-.+..+++...-....++.|+++||. ++.+.+.+++.+.||.++.+.. +.|+.|+|||+.|+.-.+
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHHHHHhc
Confidence 3455555555544444444322112347899999999 9999999999999999885554 457889999999987444
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.068 Score=61.79 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCC-CCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGS-TRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGs-srip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
++.-+++.+.-.++..++...-....++.|+++||. ++.+.+.+++.+.||.++.+..++ ++.|+|||+.|+.-.+
T Consensus 410 ~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 410 LYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHHHHHHHcC
Confidence 444445444433333333321112357899999999 999999999999999988776665 6889999999987554
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.072 Score=60.50 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
+++.-+++.+.-.++..++... .....++.|.++||.++.+...+.+.+.||.++..... .++.++|||+.|+.-.+
T Consensus 362 ~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 362 HFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDD-AETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCc-ccchHHHHHHHHHHhcC
Confidence 3455555555544444444332 11235789999999999999999999999998866554 46889999999987544
|
|
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.56 Score=53.61 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCCeeEEechhHHHHHHc-cccc--CCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhH
Q 005099 224 QRTATKDAGRIAGLDVLRIINEPTAASLAY-GFEK--KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 300 (714)
Q Consensus 224 qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay-~~~~--~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d 300 (714)
....+.++-+..|+++ ++|+..+=|-+.| +... ......+|+|+|||++.+++++-. .+.- .....+|.-.
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~--~~~~---~~Sl~lG~vr 166 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGA--QATS---LFSLSMGCVT 166 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCC--ceee---eeEEeccchH
Confidence 3445566667779998 6666666665555 2221 123468999999999999987633 2211 2236788877
Q ss_pred HHHHH
Q 005099 301 FDKRI 305 (714)
Q Consensus 301 ~D~~l 305 (714)
+.+.+
T Consensus 167 l~e~f 171 (496)
T PRK11031 167 WLERY 171 (496)
T ss_pred HHHHh
Confidence 66555
|
|
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.065 Score=52.82 Aligned_cols=30 Identities=33% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCCeeEEechhHHHHHH
Q 005099 223 SQRTATKDAGRIAGLDVLRIINEPTAASLA 252 (714)
Q Consensus 223 ~qR~~l~~Aa~~AGl~~~~li~Ep~AAAla 252 (714)
...+.+.++++.|||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457788899999999999999999998754
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.083 Score=60.62 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 375 EELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
+.++.-+++.+.-.+...+.... .....++.|.++||.++.+...+++.+.||.++.+..++ ++.++|||+.|+.-.+
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALG 451 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcC
Confidence 34455555555444443332210 011358899999999999999999999999988766655 5889999999987544
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X | Back alignment and domain information |
|---|
Probab=94.64 E-value=2.6 Score=46.69 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=42.0
Q ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHH
Q 005099 365 IDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVK 423 (714)
Q Consensus 365 ~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~ 423 (714)
-.+.||..+++++. ----.+..-++-.|++++++.+||+.|+|.||+.+.--+++.+.
T Consensus 291 ~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 291 DDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp S-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 35889999998753 22335667788899999999999999999999999888887775
|
|
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.09 Score=60.42 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC----C--CCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHH
Q 005099 374 FEELCSDLLDRLKTPVETSLRDAK----L--SFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQ 447 (714)
Q Consensus 374 fe~l~~~l~~~i~~~i~~~L~~a~----~--~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~ 447 (714)
-.+++.-+++.+.-.++..++... . ....++.|.++||+++++...+++.+.||.++.... ..|+.|+|||+.
T Consensus 378 ~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~~ 456 (512)
T PLN02295 378 KAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPA-DIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecC-ccccHHHHHHHH
Confidence 334455555555555544444322 1 123578899999999999999999999999985544 457889999999
Q ss_pred HhHhhC
Q 005099 448 AGVLAG 453 (714)
Q Consensus 448 aa~ls~ 453 (714)
|+.-.+
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 987554
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.09 Score=59.46 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 378 CSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 378 ~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
+.-+++.+.-.++..++... .....++.|.++||+++.+...+.+.+.+|.++... +.++.|+|||+.|+.-.+.
T Consensus 362 ~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 362 ARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIGVQLMALDE 437 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHHHHHHhcCC
Confidence 44444444433333333321 111247899999999999999999999999998543 3678999999999875554
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.12 Score=57.95 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC-CCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSF-KDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~-~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
.+..-.++.+.-.++..|+....+. ..|+.+.+.||.|+.|.+.+.+.+.+|.++..+.+++. ++.|||+.|+..++.
T Consensus 387 hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 387 HLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 3333444444444444444332222 56888999999999999999999999999999988888 999999999987765
|
|
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.22 Score=52.01 Aligned_cols=85 Identities=22% Similarity=0.259 Sum_probs=47.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCCeeEE---echhHHHHHHccc---ccCCCceEEEEEeCCcceEEEEEEEcCce
Q 005099 211 KAVVTVPAYFNDSQRTATKDAGRIAGLDVLRI---INEPTAASLAYGF---EKKNNETILVFDLGGGTFDVSVLEVGDGV 284 (714)
Q Consensus 211 ~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~l---i~Ep~AAAlay~~---~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~ 284 (714)
-++||=-..-....|..+......||==++.- --|+.-|.-..+- ..+....++=+|+||||+..|++...+
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gk-- 166 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGK-- 166 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccc--
Confidence 35566555555666666655555555322211 1233333322221 223367899999999999999987543
Q ss_pred EEEEEecCCCCCChhH
Q 005099 285 FEVLSTSGDTHLGGDD 300 (714)
Q Consensus 285 ~~vl~~~gd~~lGG~d 300 (714)
++. ..+..+||+-
T Consensus 167 --v~d-TaCLdiGGRL 179 (473)
T COG4819 167 --VSD-TACLDIGGRL 179 (473)
T ss_pred --ccc-ceeeecCcEE
Confidence 222 2346778863
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.13 Score=59.33 Aligned_cols=77 Identities=26% Similarity=0.312 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
.++.-+++.+.-.+...++... .....++.|.++||.++.+...+++.+.||.++....++ ++.++|||+.|+.-.|
T Consensus 382 ~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 382 TLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 3445555555444333333221 111247899999999999999999999999998766655 5789999999987544
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.86 Score=52.35 Aligned_cols=75 Identities=23% Similarity=0.389 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCCeeEEechhHHHHHHc-cccc--CCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHH
Q 005099 225 RTATKDAGRIAGLDVLRIINEPTAASLAY-GFEK--KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 301 (714)
Q Consensus 225 R~~l~~Aa~~AGl~~~~li~Ep~AAAlay-~~~~--~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~ 301 (714)
...+.++-+..|+++ ++|+..+=|.+.| +... ......+|+|+|||++.+++++-....+ ..+ ..+|.-.+
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~~S---~~lG~vrl 172 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--VES---RRMGCVSF 172 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE--eEE---EecceeeH
Confidence 344555666679998 6777666666655 3221 1235689999999999999987432221 111 36777766
Q ss_pred HHHH
Q 005099 302 DKRI 305 (714)
Q Consensus 302 D~~l 305 (714)
.+.+
T Consensus 173 ~e~f 176 (513)
T PRK10854 173 AQLY 176 (513)
T ss_pred Hhhh
Confidence 6554
|
|
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=93.94 E-value=4.6 Score=43.09 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=30.7
Q ss_pred HcCCCeeEEechhHHHHHHcccc--cCCCceEEEEEeCCcceEEEEEE
Q 005099 234 IAGLDVLRIINEPTAASLAYGFE--KKNNETILVFDLGGGTFDVSVLE 279 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~--~~~~~~vLVvD~GgGT~Dvsv~~ 279 (714)
..|++ +.+.|+..|+|++-... ....++++++.+|.|- -.+++.
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~ 141 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIII 141 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEE
Confidence 34776 47999999999875443 2235789999999875 555553
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.15 Score=57.87 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 377 LCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
++.-+++.+.-.++..++... .....++.|.++||+++.+...+++.+.+|.++.... .++.++|||+.|+.-.+.
T Consensus 349 l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 349 LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 344444444444444433321 1112478999999999999999999999999885543 479999999999875553
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.3 Score=50.83 Aligned_cols=50 Identities=26% Similarity=0.266 Sum_probs=38.5
Q ss_pred CCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 401 KDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 401 ~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
..++.|.++||+++.+...+++.+.||.++..+...+.+.+-||++.+..
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~ 449 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAA 449 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHH
Confidence 45679999999999999999999999998875555555555555555443
|
|
| >KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.25 Score=53.78 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=47.5
Q ss_pred HcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 395 DAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 395 ~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
..+....+...|++|||.|+...|-+.|.+.|+.++... +..+++|+|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 345666678899999999999999999999999887655 7888999999999874
|
|
| >PRK13321 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.15 E-value=5.3 Score=41.45 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=17.8
Q ss_pred eEEEEEcCccceEEEEEECC
Q 005099 77 KVVGIDLGTTNSAVAAMEGG 96 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g 96 (714)
++++||+|.|++++|++.++
T Consensus 1 MiL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred CEEEEEECCCeEEEEEEECC
Confidence 37899999999999999865
|
|
| >PRK14878 UGMP family protein; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=7.1 Score=42.00 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhc---CCCCCcCC---CChhHHHh
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMT---GREPNVTV---NPDEVVAL 442 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~f---g~~~~~~~---np~eaVA~ 442 (714)
.++.|+|+||-+...++++.|.+.+ +.++..+. -.|.++++
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 3678999999999999999999877 44443332 23555555
|
|
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=92.87 E-value=5.6 Score=43.00 Aligned_cols=209 Identities=16% Similarity=0.184 Sum_probs=102.8
Q ss_pred CcCeEEEEe-cCCCCHHHHHHHHHH---HHHcCCCeeEEechhHHHHHHcccccCC--CceEEEEEeCCcceEEEEEEEc
Q 005099 208 SVTKAVVTV-PAYFNDSQRTATKDA---GRIAGLDVLRIINEPTAASLAYGFEKKN--NETILVFDLGGGTFDVSVLEVG 281 (714)
Q Consensus 208 ~v~~~VITV-Pa~f~~~qR~~l~~A---a~~AGl~~~~li~Ep~AAAlay~~~~~~--~~~vLVvD~GgGT~Dvsv~~~~ 281 (714)
+++.+++|+ |..|+. -|-.+.-| +...++++ ..++--.|-|.+..+...- +--+|++|= |++. +++..+
T Consensus 72 did~iavt~GPG~~tg-lrvg~~~Ak~La~~~~ipl-~~v~h~~~ha~~a~~~s~~~~~~lvl~vsG--G~s~-~~~~~~ 146 (332)
T PRK09604 72 DIDAIAVTAGPGLVGA-LLVGVSFAKALALALNKPL-IGVNHLEGHLLAPFLEEEPEFPFLALLVSG--GHTQ-LVLVKG 146 (332)
T ss_pred HCCEEEEecCCCcHHh-HHHHHHHHHHHHHHhCCCE-EeecCHHHHHHhhhhccCCCCCEEEEEecC--CccE-EEEEcC
Confidence 467888888 777775 33333222 33335553 4455555544432222221 235667773 5544 333335
Q ss_pred CceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCC
Q 005099 282 DGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG 361 (714)
Q Consensus 282 ~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g 361 (714)
.+.++++...-+..+| . +++.+...+. ......+ +++..|...+.. ...++..... .
T Consensus 147 ~~~~~~l~~t~d~slG-~-----~yd~~t~~LG----~~~~~g~----kvmgLA~~g~~~-------~~~~~~~~~~-~- 203 (332)
T PRK09604 147 IGDYELLGETLDDAAG-E-----AFDKVAKLLG----LGYPGGP----AIDKLAKQGDPD-------AFKFPRPMDR-P- 203 (332)
T ss_pred CCcEEEccccCCchhh-H-----HHHHHHHHcC----CCCCCcH----HHHHHHHhCCCC-------eEeCCccccC-C-
Confidence 6789998876665555 2 3333333332 2211111 344444333211 1111111100 0
Q ss_pred CceeEEE-e----cH------HHHHHHHHHH----HHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc
Q 005099 362 PKHIDTT-L----TR------VKFEELCSDL----LDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 362 ~~~~~~~-i----tr------~efe~l~~~l----~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f 426 (714)
..++++. + .| ....+++..+ .+-+.+.++.+++. ..++.|+|.||.+...++++.|.+.+
T Consensus 204 ~~~~sfsg~~~~~~~~~~~~~~~~~~iA~s~q~~l~~~l~~~~~~~~~~-----~~~~~lvlsGGVa~N~~L~~~l~~~~ 278 (332)
T PRK09604 204 GLDFSFSGLKTAVLNTIEKSEQTKADIAASFQAAVVDVLVIKTKRALKQ-----TGVKTLVVAGGVAANSGLRERLAELA 278 (332)
T ss_pred CccEecCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCeEEEcChHHHHHHHHHHHHHHH
Confidence 0112111 0 00 0012233222 22333444444443 35678999999999999999999987
Q ss_pred ---CCCCCcCC---CChhHHHhHHHHHHh
Q 005099 427 ---GREPNVTV---NPDEVVALGAAVQAG 449 (714)
Q Consensus 427 ---g~~~~~~~---np~eaVA~GAa~~aa 449 (714)
+.++..+. --|.++++|++=+-.
T Consensus 279 ~~~g~~v~~~~~~p~~D~gisIg~ag~~~ 307 (332)
T PRK09604 279 KKRGIEVFIPPLKLCTDNAAMIAAAGYER 307 (332)
T ss_pred HHCCCEEECCCCCCCcHHHHHHHHHHHHH
Confidence 44443333 348899999884433
|
|
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.82 Score=51.10 Aligned_cols=43 Identities=33% Similarity=0.662 Sum_probs=32.5
Q ss_pred EEEEEcCccceEEEEEE--CCeeEEEeCCCCCccceEEEEEecCCCEEecHH
Q 005099 78 VVGIDLGTTNSAVAAME--GGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQI 127 (714)
Q Consensus 78 vIGID~GTt~s~va~~~--~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~ 127 (714)
++-+|||+|||++..++ .+..+++ |.-..||.| .+ +....|..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv--~~-~Dv~~G~~ 46 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV--EP-GDVTIGLN 46 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc--Cc-ccHHHHHH
Confidence 68899999999999998 7888887 445678877 23 35666643
|
|
| >PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 | Back alignment and domain information |
|---|
Probab=90.51 E-value=1.1 Score=47.32 Aligned_cols=73 Identities=27% Similarity=0.433 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCCeeEEechhHHHHHHcc-cc--cCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHH
Q 005099 227 ATKDAGRIAGLDVLRIINEPTAASLAYG-FE--KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDK 303 (714)
Q Consensus 227 ~l~~Aa~~AGl~~~~li~Ep~AAAlay~-~~--~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~ 303 (714)
.+...-+..|+++ .+|+..+=|.+.|. .. .......+|+|+|||++.+++++-..... ....++|.-.+.+
T Consensus 76 ~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~-----~~Sl~lG~vrl~e 149 (285)
T PF02541_consen 76 FLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVF-----SQSLPLGAVRLTE 149 (285)
T ss_dssp HHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEE-----EEEES--HHHHHH
T ss_pred HHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeE-----eeeeehHHHHHHH
Confidence 3444555679988 56666655555442 11 12357899999999999999886432221 2225789887766
Q ss_pred HH
Q 005099 304 RI 305 (714)
Q Consensus 304 ~l 305 (714)
.+
T Consensus 150 ~~ 151 (285)
T PF02541_consen 150 RF 151 (285)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A. |
| >PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.84 Score=49.71 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCC-CCC----cCCCChhHHHhHHHHHH
Q 005099 374 FEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR-EPN----VTVNPDEVVALGAAVQA 448 (714)
Q Consensus 374 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~-~~~----~~~np~eaVA~GAa~~a 448 (714)
-++++.-+.+=+...|.+.++... .+++.|+++||+++.|.+.+.|++.++. ++. ..++|+.-=|.+-|++|
T Consensus 259 ~~D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La 335 (364)
T PF03702_consen 259 PEDILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHH
Confidence 444555566656666666666644 2378999999999999999999999954 332 23445444444456666
Q ss_pred hH
Q 005099 449 GV 450 (714)
Q Consensus 449 a~ 450 (714)
..
T Consensus 336 ~~ 337 (364)
T PF03702_consen 336 YR 337 (364)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B. |
| >PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=90.27 E-value=2.6 Score=45.93 Aligned_cols=72 Identities=21% Similarity=0.280 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCC----cCCCChhHHHhHHHHHHhH
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN----VTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~----~~~np~eaVA~GAa~~aa~ 450 (714)
+++.-+.+=+...|.+.+.... ...+.|+++||+++.|.+.+.|++.++.++. ..++++.-=|..-|++|..
T Consensus 263 D~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 263 DVQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 3444444555555666665432 2346899999999999999999999863332 1245665555556677654
|
|
| >PRK09698 D-allose kinase; Provisional | Back alignment and domain information |
|---|
Probab=89.94 E-value=29 Score=36.69 Aligned_cols=42 Identities=17% Similarity=0.068 Sum_probs=28.3
Q ss_pred cCCCeeEEechhHHHHHHcccc-cCCCceEEEEEeCCcceEEEEE
Q 005099 235 AGLDVLRIINEPTAASLAYGFE-KKNNETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~-~~~~~~vLVvD~GgGT~Dvsv~ 278 (714)
.|++ +.+.|+..|+|++-... .....+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEE
Confidence 4776 48999999998864332 223458888899876 444554
|
|
| >TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family | Back alignment and domain information |
|---|
Probab=89.38 E-value=9.1 Score=40.81 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc
Q 005099 384 RLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 384 ~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f 426 (714)
-+.+.++++++. ..++.|+|.||.....++++.|.+.+
T Consensus 245 ~l~~~~~~~~~~-----~g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 245 HLIEKTKRALKD-----TGPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHHH
Confidence 333444455544 34678999999999999999998887
|
This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea. |
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=89.09 E-value=0.13 Score=46.80 Aligned_cols=21 Identities=38% Similarity=0.639 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEECCee
Q 005099 78 VVGIDLGTTNSAVAAMEGGKP 98 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~~ 98 (714)
|++||+|++.+++++++.+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 689999999999999988654
|
|
| >TIGR03281 methan_mark_12 putative methanogenesis marker protein 12 | Back alignment and domain information |
|---|
Probab=87.53 E-value=3 Score=43.68 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=45.4
Q ss_pred CCEEEEEcC--CCCch-hHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEe
Q 005099 403 LDEVILVGG--STRIP-AVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLD 462 (714)
Q Consensus 403 i~~VvLvGG--ssrip-~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~d 462 (714)
...|+|.|- +.+.| .+++.|++.|..++.. +.. ++.|.|+|+.|.-+.+..++++=++
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~-L~~-ksAA~G~AiIA~dI~gGk~~iLGi~ 323 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLV-LDS-ESAAIGLALIAEDIFSGKREILGID 323 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeEE-ecc-hhhhhhHHHHHHHHhCCcceEeeee
Confidence 458999987 99999 9999999999754432 222 8999999999988887767655433
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. |
| >TIGR03722 arch_KAE1 universal archaeal protein Kae1 | Back alignment and domain information |
|---|
Probab=87.45 E-value=45 Score=35.82 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhc---CCCCCcCC---CChhHHHhH
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMT---GREPNVTV---NPDEVVALG 443 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~f---g~~~~~~~---np~eaVA~G 443 (714)
.++.|+|.||.+...++.+.|.+.+ +.++..+. --|.++++|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 3678999999999999999999865 33333222 237778887
|
This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica. |
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
Probab=87.36 E-value=2.4 Score=45.17 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCcCeE-EEEecCCCCHHHHHHHH-HHHHHcCCCeeEEechhHHHHHHccccc-C-CCceEE
Q 005099 189 ISAQVLRKLVDDASKFLNDSVTKA-VVTVPAYFNDSQRTATK-DAGRIAGLDVLRIINEPTAASLAYGFEK-K-NNETIL 264 (714)
Q Consensus 189 v~a~~L~~l~~~a~~~~~~~v~~~-VITVPa~f~~~qR~~l~-~Aa~~AGl~~~~li~Ep~AAAlay~~~~-~-~~~~vL 264 (714)
-+...|+..++.+..+ +. .++ +++--|.=....++.+. ..-+..|+++ ++|+..+=|.+.|.--. . .....+
T Consensus 53 ~~~~~l~~f~~~~~~~-~v--~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~ 128 (300)
T TIGR03706 53 RALEALKRFAELLRGF-PV--DEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGL 128 (300)
T ss_pred HHHHHHHHHHHHHHhC-CC--CeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcE
Confidence 3345566666666543 22 222 33333322323333444 4445679987 68887777777663211 1 122359
Q ss_pred EEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHH
Q 005099 265 VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRI 305 (714)
Q Consensus 265 VvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l 305 (714)
++|+|||++.++.+.-.+ +. .....++|...+.+.+
T Consensus 129 v~DiGGGSte~~~~~~~~--~~---~~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 129 VVDIGGGSTELILGKDFE--PG---EGVSLPLGCVRLTEQF 164 (300)
T ss_pred EEEecCCeEEEEEecCCC--Ee---EEEEEccceEEhHHhh
Confidence 999999999999876332 11 1223567776665554
|
It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. |
| >PRK09557 fructokinase; Reviewed | Back alignment and domain information |
|---|
Probab=87.26 E-value=43 Score=35.39 Aligned_cols=42 Identities=14% Similarity=0.338 Sum_probs=28.6
Q ss_pred cCCCeeEEechhHHHHHHcccc--cCCCceEEEEEeCCcceEEEEE
Q 005099 235 AGLDVLRIINEPTAASLAYGFE--KKNNETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~--~~~~~~vLVvD~GgGT~Dvsv~ 278 (714)
.|++ +.+.|+..|+|++-... .+..++++.+.+|.| +-..++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEE
Confidence 3776 57999999999886443 223567888888865 444554
|
|
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=86.22 E-value=71 Score=36.88 Aligned_cols=52 Identities=29% Similarity=0.294 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhc---CCCCCcCC---CChhHHHhHHHHHHhHhhC
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMT---GREPNVTV---NPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~f---g~~~~~~~---np~eaVA~GAa~~aa~ls~ 453 (714)
.++.|+|+||-....++++.|.+.+ +.++..+. -.|.++++|++.+....++
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 4678999999999999999999665 44443333 4578999998876554443
|
|
| >PLN02666 5-oxoprolinase | Back alignment and domain information |
|---|
Probab=85.87 E-value=9.5 Score=48.36 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=47.1
Q ss_pred ecHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCC-CCcCCCChhHHHhHHHH
Q 005099 369 LTRVKFEELCSDLL-DRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRE-PNVTVNPDEVVALGAAV 446 (714)
Q Consensus 369 itr~efe~l~~~l~-~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~-~~~~~np~eaVA~GAa~ 446 (714)
++-++..+-+..+. ....+.|+.+....++++.+ -.++..||.. |..--.|.+.+|.+ +..+.+|.-..|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444444333333 34556666666666665543 2334445444 66677888899876 77888999999999986
|
|
| >KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=85.85 E-value=1 Score=50.17 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCCCC--CCCEEEEEcCCCCchhHHHHHHhhc-CC-------CCCcCCCChhHHHhHHHHHHhH
Q 005099 385 LKTPVETSLRDAKLSFK--DLDEVILVGGSTRIPAVQELVKKMT-GR-------EPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 385 i~~~i~~~L~~a~~~~~--~i~~VvLvGGssrip~v~~~l~~~f-g~-------~~~~~~np~eaVA~GAa~~aa~ 450 (714)
+.+++..+|...-.+.. .+..|+|+||+|.+|.+.+.|...+ +. .+....||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 44555555555322212 2789999999999999999998776 32 3455679999999999999986
|
|
| >PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=84.80 E-value=25 Score=41.62 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCc--hhHHH-HHHhhc
Q 005099 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRI--PAVQE-LVKKMT 426 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssri--p~v~~-~l~~~f 426 (714)
++...++.....+-..+...-....+.+.|+|-||-+.- +++.+ .+.+.|
T Consensus 244 ~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f 296 (638)
T PRK14101 244 LALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARF 296 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHH
Confidence 344556666666655555543333346789999998733 55553 566666
|
|
| >COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.76 E-value=79 Score=36.11 Aligned_cols=83 Identities=20% Similarity=0.178 Sum_probs=57.6
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHH-HHHHhhcCCCCCcCC-CChhHHHhHH
Q 005099 367 TTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQ-ELVKKMTGREPNVTV-NPDEVVALGA 444 (714)
Q Consensus 367 ~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~-~~l~~~fg~~~~~~~-np~eaVA~GA 444 (714)
.+..-.++...++..++++...+-.-+.+... .+.+.+.||....-..- ++|.+-+..++.+.. -.|.-.|.||
T Consensus 254 ~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 254 STERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHH
Confidence 34445566666777777776666665555321 56899999998877777 777777766665544 4478899999
Q ss_pred HHHHhHhhC
Q 005099 445 AVQAGVLAG 453 (714)
Q Consensus 445 a~~aa~ls~ 453 (714)
|+++....+
T Consensus 330 Al~~~~~~~ 338 (555)
T COG2192 330 ALAVKRELG 338 (555)
T ss_pred HHHHHHHhc
Confidence 999876443
|
|
| >PRK12408 glucokinase; Provisional | Back alignment and domain information |
|---|
Probab=84.52 E-value=64 Score=34.86 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=29.1
Q ss_pred HcCCCeeEEechhHHHHHHcccc----------c-CCC-ceEEEEEeCCcceEEEEE
Q 005099 234 IAGLDVLRIINEPTAASLAYGFE----------K-KNN-ETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~----------~-~~~-~~vLVvD~GgGT~Dvsv~ 278 (714)
..|++.+.++|+-.|+|++-... . +.. ..++++=+|.| +=.+++
T Consensus 107 ~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTG-iGggiv 162 (336)
T PRK12408 107 QLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTG-LGAALW 162 (336)
T ss_pred HcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCc-ceEEEE
Confidence 45787689999999999975332 1 111 46777777765 444555
|
|
| >COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.36 E-value=4.7 Score=41.09 Aligned_cols=73 Identities=23% Similarity=0.340 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcce
Q 005099 194 LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 273 (714)
Q Consensus 194 L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~ 273 (714)
.+++++.+++.++.++ .|+++-..|... +++++--..|--+ ..|.-.+.. ....+.++++|+|..|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~vAAaN--------W~Ata~~~~-e~~~dsci~VD~GSTTt 142 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREVAAAN--------WVATARFLA-EEIKDSCILVDMGSTTT 142 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHHHHhh--------hHHHHHHHH-HhcCCceEEEecCCccc
Confidence 4567777787777776 889999988765 3332211111000 111111111 11256789999999999
Q ss_pred EEEEEE
Q 005099 274 DVSVLE 279 (714)
Q Consensus 274 Dvsv~~ 279 (714)
|+-=+.
T Consensus 143 DIIPi~ 148 (330)
T COG1548 143 DIIPIK 148 (330)
T ss_pred ceEeec
Confidence 986544
|
|
| >PRK00976 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.18 E-value=7 Score=41.74 Aligned_cols=58 Identities=28% Similarity=0.354 Sum_probs=44.4
Q ss_pred CCCEEEEEcCCCCch--hHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEE
Q 005099 402 DLDEVILVGGSTRIP--AVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLL 461 (714)
Q Consensus 402 ~i~~VvLvGGssrip--~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~ 461 (714)
+++.|+|-||-++.+ .+.+.+++.+... ...-..++.++|||+.|..+.+..++++=.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G~~~ilgi 322 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNGKKDILGI 322 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCCCceeeee
Confidence 478899999999998 8888898888543 233345899999999998877666665433
|
|
| >KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.33 E-value=3.7 Score=44.65 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=81.2
Q ss_pred CCeEEEEEcCccceEEEEEEC-----CeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCC
Q 005099 75 NEKVVGIDLGTTNSAVAAMEG-----GKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGR 149 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~-----g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~ 149 (714)
..++|-||=|+|-|+|-+|+= +.+-.+..+-=....|=.=+| ..+|.....+++.||..
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsf----------------addp~~aA~Sl~~LLd~ 129 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSF----------------ADDPEEAANSLRPLLDV 129 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCccccc----------------CCChHHHHHhHHHHHHH
Confidence 568999999999999998842 111111110001111222223 23455555566777744
Q ss_pred CchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHH
Q 005099 150 KMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATK 229 (714)
Q Consensus 150 ~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~ 229 (714)
....+ |....+ .-.+.+.-. .+-++.|.+-+..+|+.++++.+....-++..-.|+|=.
T Consensus 130 A~~~v-------P~~~~~--kTPi~lkAT-AGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~----------- 188 (453)
T KOG1385|consen 130 AEAFV-------PREHWK--KTPIVLKAT-AGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMD----------- 188 (453)
T ss_pred HHhhC-------CHhHhc--cCceEEEee-cccccCChhHHHHHHHHHHHHHhccCCccccCCceeecc-----------
Confidence 33322 221110 111222221 366788999999999999998874333222211122211
Q ss_pred HHHHHcCCCeeEEechhHHH--HHHccccc---CCCceEEEEEeCCcceEEEEEE
Q 005099 230 DAGRIAGLDVLRIINEPTAA--SLAYGFEK---KNNETILVFDLGGGTFDVSVLE 279 (714)
Q Consensus 230 ~Aa~~AGl~~~~li~Ep~AA--Alay~~~~---~~~~~vLVvD~GgGT~Dvsv~~ 279 (714)
| .+|-.-| .+.|.... ....++.|+|+|||+|.++..-
T Consensus 189 ------G------tdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 189 ------G------TDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ------C------cccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 1 1111111 12333321 1157899999999999999875
|
|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=83.21 E-value=14 Score=39.73 Aligned_cols=71 Identities=27% Similarity=0.342 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCC---CcCCCC----hhHHHhHHHHHHhHhh
Q 005099 380 DLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREP---NVTVNP----DEVVALGAAVQAGVLA 452 (714)
Q Consensus 380 ~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~---~~~~np----~eaVA~GAa~~aa~ls 452 (714)
.+++.+.+.|...+.. ..+++.|+|.|-.+++|-+.+.+++.|+.-. ...+.+ -...|.|||+.|.-+.
T Consensus 242 a~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~gla 317 (343)
T PF07318_consen 242 AMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLA 317 (343)
T ss_pred HHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhh
Confidence 3344444444433333 3467899999999999999988888774311 112222 2448999999998776
Q ss_pred CC
Q 005099 453 GD 454 (714)
Q Consensus 453 ~~ 454 (714)
+.
T Consensus 318 GG 319 (343)
T PF07318_consen 318 GG 319 (343)
T ss_pred cc
Confidence 65
|
The function of this family is unknown. |
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=82.80 E-value=0.76 Score=48.67 Aligned_cols=42 Identities=26% Similarity=0.450 Sum_probs=26.1
Q ss_pred CeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEE
Q 005099 238 DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLE 279 (714)
Q Consensus 238 ~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~ 279 (714)
++..+.+-|.|.+...........+++++|+||.|||++++.
T Consensus 54 Pv~ti~SGPaas~~ga~~~~~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 54 PVETILSGPAASVIGAAARLTGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp GGCTB--SSHHHHHHHHH--HT-SSEEEEEE-SS-EEEEEEE
T ss_pred HHHHhhcCHHHhHhhhhhhcCCCCCEEEEeCCCCEEEEEEEE
Confidence 455567777776655444222356899999999999999986
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.85 E-value=9.5 Score=43.37 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcCeEE-EEecCCC-CHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccc--cCCCceE
Q 005099 188 EISAQVLRKLVDDASKFLNDSVTKAV-VTVPAYF-NDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFE--KKNNETI 263 (714)
Q Consensus 188 ev~a~~L~~l~~~a~~~~~~~v~~~V-ITVPa~f-~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~--~~~~~~v 263 (714)
+.+...+..|+..++...+..+.++. |+.-|.= -...-+.+..+-+..|+++--|=-|-+|--.+++.- .......
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~ 131 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDG 131 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCE
Confidence 34444555555555444444555522 2111111 123344577788888999844444444433333322 1115789
Q ss_pred EEEEeCCcceEEEEEEE
Q 005099 264 LVFDLGGGTFDVSVLEV 280 (714)
Q Consensus 264 LVvD~GgGT~Dvsv~~~ 280 (714)
+|+|+|||+|.+++..-
T Consensus 132 lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 132 LVIDIGGGSTELVLGDN 148 (492)
T ss_pred EEEEecCCeEEEEEecC
Confidence 99999999999999873
|
|
| >COG5026 Hexokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.32 E-value=17 Score=40.06 Aligned_cols=26 Identities=38% Similarity=0.477 Sum_probs=20.8
Q ss_pred CCeEEEEEcCccceEEEEEE---CCeeEE
Q 005099 75 NEKVVGIDLGTTNSAVAAME---GGKPTI 100 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~---~g~~~i 100 (714)
.+.++.||||.||.++|.+. +|+.++
T Consensus 74 ~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 74 SGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 67899999999999999874 344444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 714 | ||||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 1e-180 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 1e-179 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 1e-173 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-146 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 1e-145 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 1e-144 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 1e-116 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-95 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 8e-94 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-93 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 1e-93 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-93 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-93 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-93 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 1e-93 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 2e-93 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 2e-93 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 2e-93 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 4e-93 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 6e-93 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 1e-92 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 1e-92 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 1e-92 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-92 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 1e-92 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 1e-92 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 2e-92 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 2e-92 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 3e-92 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 3e-92 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 3e-92 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-92 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-92 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 4e-92 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 4e-92 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 4e-92 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-92 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 4e-92 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 5e-92 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-92 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-92 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-92 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 6e-92 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 1e-91 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-91 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 1e-91 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 2e-91 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 2e-91 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 2e-91 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 1e-90 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 2e-85 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 3e-57 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 4e-57 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 7e-57 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 2e-56 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 1e-53 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-50 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-48 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 7e-48 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 2e-47 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 3e-47 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 3e-47 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 7e-44 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 2e-43 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 6e-43 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-42 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 4e-40 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 1e-39 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 3e-37 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 5e-34 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 1e-09 | ||
| 1jce_A | 344 | Mreb From Thermotoga Maritima Length = 344 | 9e-08 | ||
| 3h1q_A | 272 | Crystal Structure Of Ethanolamine Utilization Prote | 9e-04 |
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
| >pdb|3H1Q|A Chain A, Crystal Structure Of Ethanolamine Utilization Protein Eutj From Carboxydothermus Hydrogenoformans Length = 272 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 714 | |||
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 0.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 0.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 0.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 0.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 0.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 0.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 0.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 1e-121 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 1e-113 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 1e-110 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 3e-89 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 1e-84 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 3e-84 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 7e-84 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 2e-77 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 2e-40 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 2e-28 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 2e-26 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 6e-16 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 1e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-11 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 3e-11 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 6e-09 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 6e-07 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 6e-07 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 9e-07 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 1e-05 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 3e-04 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 4e-04 |
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 1036 bits (2680), Expect = 0.0
Identities = 333/605 (55%), Positives = 448/605 (74%), Gaps = 9/605 (1%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
K++GIDLGTTNS VA M+G P ++ NAEG RTTPS++AYT++G+ LVGQ AKRQAV NP
Sbjct: 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 137 ENTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVL 194
+NT F++KR IGR+ EV + + ++++ +NG+ +E G++ A +ISA+VL
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVE--VKGQKMAPPQISAEVL 120
Query: 195 RKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
+K+ A +L + VT+AV+TVPAYFND+QR ATKDAGRIAGL+V RIINEPTAA+LAYG
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 255 FEKKN-NETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRIVDWL 309
+K N TI V+DLGGGTFD+S++E+ G+ FEVL+T+GDTHLGG+DFD R++++L
Sbjct: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 310 ASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTL 369
FK+D+GIDL D A+QRL E AEKAK+ELSS QT+++LP+ITA A GPKH++ +
Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 300
Query: 370 TRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRE 429
TR K E L DL++R P++ +L+DA LS D+D+VILVGG TR+P VQ+ V + G+E
Sbjct: 301 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 360
Query: 430 PNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPT 489
P VNPDE VA+GAAVQ GVL GDV D++LLDVTPLSLG+ET+GGVMT +I +NTT+PT
Sbjct: 361 PRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPT 420
Query: 490 SKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDA 549
S+VFSTA D Q++V I+VLQGER+ DNKSLG F LDGI PAPRG+PQIEV FDIDA
Sbjct: 421 KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA 480
Query: 550 NGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQAD 609
+GIL VSA DK +GK+Q ITI +S L DE+Q+MV++AE A+ D++ + + T+NQ D
Sbjct: 481 DGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGD 540
Query: 610 SVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQ 669
+++ T KQ++E GDK+PA+ K +E L L+ A+ A++ M L Q +L +
Sbjct: 541 HLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLME 600
Query: 670 SLYNQ 674
Q
Sbjct: 601 IAQQQ 605
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 933 bits (2413), Expect = 0.0
Identities = 326/533 (61%), Positives = 416/533 (78%), Gaps = 26/533 (4%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
K++GIDLGTTNS VA +EGG+ ++ N EG RTTPSVVA+ KNG+RLVG++AKRQA+ NP
Sbjct: 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITNP 61
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
NT S+KR +G Y+V + GKQ+ +EISA +L+
Sbjct: 62 -NTIISIKRHMGTD------------YKVEIE------------GKQYTPQEISAIILQY 96
Query: 197 LVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFE 256
L A +L + VT+AV+TVPAYFND+QR ATKDAGRIAGL+V RIINEPTAA+LAYG +
Sbjct: 97 LKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLD 156
Query: 257 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316
K+ ++TILV+DLGGGTFDVS+LE+GDGVFEV +T+GD HLGGDDFD+ I+D+L + FK++
Sbjct: 157 KEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQE 216
Query: 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEE 376
GIDL KDK ALQRL + AEKAK ELS +TQT ISLPFI+A +GP H++ TLTR KFEE
Sbjct: 217 HGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEE 276
Query: 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNP 436
L + L++R PV +L+DA L+ D+D+VILVGGSTRIPAVQE +K+ G+EP+ VNP
Sbjct: 277 LSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNP 336
Query: 437 DEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFS 496
DEVVA+GAA+Q GV+AG+V D+VLLDVTPLSLG+ET+GGV TK+I RNTT+PTSKS+VF+
Sbjct: 337 DEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFT 396
Query: 497 TAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVS 556
TAAD QT+V+I+VLQGER DNKSLG F+L GIPPAPRGVPQIEV FDIDANGI+ V
Sbjct: 397 TAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVR 456
Query: 557 AVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQAD 609
A D GT K+Q ITI +S L +E+QRM++EAE A+ D+++++A + +N+AD
Sbjct: 457 AKDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 844 bits (2184), Expect = 0.0
Identities = 287/555 (51%), Positives = 378/555 (68%), Gaps = 16/555 (2%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
VGIDLGTT S V + GK I+ N +G RTTPS VA+T + +RL+G AK Q +NP
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNP 63
Query: 137 ENTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDE-NGNVKLECPAIGKQFAAEEISAQV 193
NT F KR IGR+ V + K + VV D V++E K F EE+S+ V
Sbjct: 64 TNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMV 123
Query: 194 LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAY 253
L K+ + A +L +VT AVVTVPAYFNDSQR ATKDAG IAGL+VLRIINEPTAA++AY
Sbjct: 124 LTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 183
Query: 254 GFEKKNNE--TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 311
G +KK +L+FDLGGGTFDVS+L + G+FEV ST+GDTHLGG+DFD R+V+ +
Sbjct: 184 GLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIA 243
Query: 312 NFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTR 371
FKR D+ ++K+A++RL E+AK LSS TQ +I + + D T++TR
Sbjct: 244 EFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGID----FYTSITR 299
Query: 372 VKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM-TGREP 430
+FEEL +DL PVE +LRDAKL + +++LVGGSTRIP +Q+L++ G+E
Sbjct: 300 ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKEL 359
Query: 431 NVTVNPDEVVALGAAVQAGVLAGD----VSDIVLLDVTPLSLGLETLGGVMTKIIPRNTT 486
N ++NPDE VA GAAVQA +L+GD V D++LLDVTPLSLG+ET GGVMT +I RNTT
Sbjct: 360 NKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTT 419
Query: 487 LPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFD 546
+PT +++ F+T +D Q V I V +GER +DN LG F L GIPPAPRGVPQIEV FD
Sbjct: 420 IPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFD 479
Query: 547 IDANGILSVSAVDKGTGKKQDITITGAS-TLPNDEVQRMVQEAERFAKEDKEKRDAIDTK 605
IDANGIL+VSAVDK TGK+ ITIT L ++++RMVQEAE++ ED+++RD + +K
Sbjct: 480 IDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSK 539
Query: 606 NQADSVVYQTEKQLK 620
N +S + + ++
Sbjct: 540 NSLESYAFNMKATVE 554
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 783 bits (2025), Expect = 0.0
Identities = 166/671 (24%), Positives = 301/671 (44%), Gaps = 41/671 (6%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
G+DLG NS +A IV N R+TPSVV + +R +G+ K + N
Sbjct: 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFG-PKNRYLGETGKNKQTSNI 61
Query: 137 ENTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIG--KQFAAEEISAQ 192
+NT ++KR IG + ++ESK + ++V ++ E G F+A +++A
Sbjct: 62 KNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAM 121
Query: 193 VLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLA 252
+ K+ D + ++T + VP ++ + QR DA RIAGL+ +RI+N+ TAA ++
Sbjct: 122 FIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVS 181
Query: 253 YGFEKKNN-------ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRI 305
YG K + + D+G ++ S++ G +VL T+ D H GG DFD I
Sbjct: 182 YGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAI 241
Query: 306 VDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHI 365
+ A FK ID+ ++ +A R+ AEK K LS+ T PF + +
Sbjct: 242 TEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNA----PFSVESVMNDVDV 297
Query: 366 DTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM 425
+ L+R + EEL LL+R+ PV +L AKLS +++D V ++GG+TRIP +++ + +
Sbjct: 298 SSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEA 357
Query: 426 TGREPNVTVNPDEVVALGAAVQAGVLAGD--VSDIVLLDVTPLSLGLETLGGV----MTK 479
G+ + T+N DE +A GAA + + V D+ P S+ V +
Sbjct: 358 FGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQVEDEDHME 417
Query: 480 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGI--PPAPRG 537
+ P ++ P++K + D + + + + ++ + G+ P
Sbjct: 418 VFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDS 475
Query: 538 VPQIEVKFDIDANGILSVS----------AVDKGTGKKQDITIT-GASTLPNDEVQRMVQ 586
VP +++K D +G+ ++ D T KK D+TI L ++ +++
Sbjct: 476 VP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIE 534
Query: 587 EAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE-LGDKVPAEVKGKVEGKLKELKDAI 645
+ +DK + D KN + +Y +L+E K K++G L + ++ +
Sbjct: 535 KENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWL 594
Query: 646 AEGSTQAMKDTMAALNQEVMQLGQSLYN--QPGAGAAPGAGPTPGAEAGASDSSNKGQDG 703
+ ++K A +E+ LG + A + + + + K
Sbjct: 595 YDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAAQ 654
Query: 704 DVIDADFTDSK 714
+A+ + K
Sbjct: 655 RKAEAEKKEEK 665
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 677 bits (1749), Expect = 0.0
Identities = 214/382 (56%), Positives = 288/382 (75%), Gaps = 9/382 (2%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
K++GIDLGTTNS VA M+G P ++ NAEG RTTPS++AYT++G+ LVGQ AKRQAV NP
Sbjct: 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 137 ENTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVL 194
+NT F++KR IGR+ EV + + ++++ +NG+ +E G++ A +ISA+VL
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVE--VKGQKMAPPQISAEVL 120
Query: 195 RKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
+K+ A +L + VT+AV+TVPAYFND+QR ATKDAGRIAGL+V RIINEPTAA+LAYG
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 255 FEKKN-NETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRIVDWL 309
+K N TI V+DLGGGTFD+S++E+ G+ FEVL+T+GDTHLGG+DFD R++++L
Sbjct: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 310 ASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTL 369
FK+D+GIDL D A+QRL E AEKAK+ELSS QT+++LP+ITA A GPKH++ +
Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 300
Query: 370 TRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRE 429
TR K E L DL++R ++ +L+DA LS D+D+VILVGG TR+P VQ+ V + G+E
Sbjct: 301 TRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 360
Query: 430 PNVTVNPDEVVALGAAVQAGVL 451
P VNPDE VA+GAAVQ GVL
Sbjct: 361 PRKDVNPDEAVAIGAAVQGGVL 382
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 547 bits (1412), Expect = 0.0
Identities = 196/386 (50%), Positives = 251/386 (65%), Gaps = 13/386 (3%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
+GIDLGTT S V + GK I+ N +G RTTPS VA+T + +RL+G AK Q +NP
Sbjct: 24 PAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNP 82
Query: 137 ENTFFSVKRFIGRKM--VEVDEESKQVSYRVV-RDENGNVKLECPAIGKQFAAEEISAQV 193
NT F KR IGRK V + K +RVV V++E K F EEIS+ V
Sbjct: 83 TNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMV 142
Query: 194 LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAY 253
L K+ + A +L V AV+TVPAYFNDSQR ATKDAG I GL+VLRIINEPTAA++AY
Sbjct: 143 LTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAY 202
Query: 254 GFEKKNNE----TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL 309
G +KK +L+FDLGGGTFDVS+L + DG+FEV ST+GDTHLGG+DFD R+V L
Sbjct: 203 GLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHL 262
Query: 310 ASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTL 369
A FKR D+ +K+A++RL E+AK LSS TQ +I + + D T++
Sbjct: 263 AEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVD----FYTSI 318
Query: 370 TRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM-TGR 428
TR +FEEL +DL PVE +LRDAKL + E++LVGGSTRIP +Q+L++ G+
Sbjct: 319 TRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGK 378
Query: 429 EPNVTVNPDEVVALGAAVQAGVLAGD 454
E N ++NPDE VA GAAVQA +L GD
Sbjct: 379 ELNKSINPDEAVAYGAAVQAAILIGD 404
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-121
Identities = 114/219 (52%), Positives = 155/219 (70%)
Query: 458 IVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFV 517
++LLDVTPLSLG+ET+GGVMT +I +NTT+PT S+VFSTA D Q++V I+VLQGER+
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 518 RDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLP 577
DNKSLG F LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI +S L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 578 NDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGK 637
DE+Q+MV++AE A+ D++ + + T+NQ D +++ T KQ++E GDK+PA+ K +E
Sbjct: 121 EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESA 180
Query: 638 LKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQPG 676
L L+ A+ A++ M L Q +L + Q
Sbjct: 181 LTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA 219
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 339 bits (872), Expect = e-113
Identities = 74/222 (33%), Positives = 126/222 (56%)
Query: 461 LDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDN 520
+DV PLSLGLET+GG++ K+IPRNTT+P ++++ F+T DGQT++ I+V+QGERE V+D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 521 KSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDE 580
+SL F L GIP P G I V F +DA+G+LSV+A++K TG + I + + L + E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 581 VQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKE 640
+ M++++ +A++D + R + K +A V+ L + A + ++
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 641 LKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQPGAGAAPG 682
L + A++ + ++++ +Q A G
Sbjct: 181 LSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKG 222
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 330 bits (848), Expect = e-110
Identities = 99/174 (56%), Positives = 128/174 (73%)
Query: 447 QAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVE 506
L + +DVTPLSLG+ETLGGV TK+I RNTT+PT KS+VFSTAADGQT VE
Sbjct: 9 SGVDLGTENLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVE 68
Query: 507 INVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQ 566
I V QGERE DNK LG F L GIPPAPRGVPQIEV FDIDANGI+ VSA DKGTG++Q
Sbjct: 69 IKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQ 128
Query: 567 DITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLK 620
I I + L D+++ MV+ AE++A+ED+ K++ ++ N A+ +++ TE +++
Sbjct: 129 QIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 3e-89
Identities = 93/148 (62%), Positives = 118/148 (79%)
Query: 462 DVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNK 521
DVTPLSLG+ETLGG+MTK+I RNTT+PT KS+VFSTAADGQT V+I V QGERE NK
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 522 SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEV 581
LG F L GIPPAPRGVPQ+EV FDIDANGI++VSA D+GTGK+Q I I + L D++
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 582 QRMVQEAERFAKEDKEKRDAIDTKNQAD 609
+ M++EAE+ A ED ++++ ++ NQA+
Sbjct: 124 ENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 262 bits (672), Expect = 1e-84
Identities = 82/149 (55%), Positives = 115/149 (77%), Gaps = 1/149 (0%)
Query: 462 DVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNK 521
DV PL+LG+ET+GGVMTK+I RNT +PT KS+VFSTAAD Q++V I + +GER V DN
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 522 SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGAS-TLPNDE 580
LG+F + GIPPAPRGVPQIEV F+ID NGIL VSA DKGTG K +TIT L ++
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 581 VQRMVQEAERFAKEDKEKRDAIDTKNQAD 609
++RM+ +A++FA +D+ +++ ++++N+ +
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 3e-84
Identities = 85/149 (57%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
Query: 462 DVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNK 521
DV L+LG+ET GGVMT +I RNT +PT KS++FSTA D Q +V I V +GER +DN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 522 SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGAS-TLPNDE 580
LG F L GIPPAPRGVPQIEV F +DANGIL VSA DKGTGK + ITIT L +E
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 581 VQRMVQEAERFAKEDKEKRDAIDTKNQAD 609
+ RMV+EAE+FA ED + ++++N+ +
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 260 bits (668), Expect = 7e-84
Identities = 85/149 (57%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query: 462 DVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNK 521
DV PLSLG+ET GGVMT +I RNT +PT + F+T AD Q V I V +GER RDN
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 522 SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGAS-TLPNDE 580
LG+F L GIPPAPRGVPQIEV F+IDANGIL+VSA DK TGK ITI L +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 581 VQRMVQEAERFAKEDKEKRDAIDTKNQAD 609
+ RMV EA++F KED E+R+ + +NQ +
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 2e-77
Identities = 80/135 (59%), Positives = 100/135 (74%)
Query: 442 LGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADG 501
+G++ ++DVTPLSLG+ET+GGVMT +I +NTT+PT S+VFSTA D
Sbjct: 1 MGSSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDN 60
Query: 502 QTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKG 561
Q++V I+VLQGER+ DNKSLG F LDGI PAPRG+PQIEV FDIDA+GIL VSA DK
Sbjct: 61 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 120
Query: 562 TGKKQDITITGASTL 576
+GK+Q ITI +S L
Sbjct: 121 SGKEQKITIKASSGL 135
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 2e-40
Identities = 60/372 (16%), Positives = 107/372 (28%), Gaps = 107/372 (28%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR--LVGQIAKRQAVVNP 136
+ L N + P V LV + V
Sbjct: 6 LEQKLNLLNDLIVREIV----NPLP------PPYKVGVDLGTADIVLVVTDQEGIPV--A 53
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
VV+D G V + Q++R+
Sbjct: 54 GAL---------------------KWASVVKD--GLV-----------VDYIGAIQIVRE 79
Query: 197 LVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFE 256
L + L + +A +P A AGL+++ +++EP AA+ A G
Sbjct: 80 LKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN 139
Query: 257 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316
+V D+GGGT ++V+E G + D GG + F
Sbjct: 140 DG-----IVVDIGGGTTGIAVIEKGKITA-----TFDEPTGGTHLSLVLAGSYKIPF--- 186
Query: 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEE 376
E AE K + S +
Sbjct: 187 ----------------EEAETIKKDFSRHREI--------------------------MR 204
Query: 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNP 436
+ +++++ V+ +++ + V +VGG+ + E + G+E V ++P
Sbjct: 205 VVRPVIEKMALIVKEVIKN----YDQTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHP 260
Query: 437 DEVVALGAAVQA 448
V LG A+
Sbjct: 261 LLVTPLGIALFG 272
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 2e-28
Identities = 54/373 (14%), Positives = 113/373 (30%), Gaps = 59/373 (15%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 138
V ID G+TN + E + S ++ + G +N E
Sbjct: 3 VFIDDGSTNIKLQWQESDGTI--------KQHISPNSFKREWAVSFGDKKVFNYTLNGEQ 54
Query: 139 TFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLV 198
F + + V+ V + E+ L
Sbjct: 55 YSFDPISPDAVVTTNIAWQYSDVNVVAVHHA---------LLTSGLPVSEVDIVCTLPL- 104
Query: 199 DDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKK 258
+++ + + + + ++ T + G + ++++ E A E
Sbjct: 105 ---TEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD 161
Query: 259 NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEG 318
+++L+ DLGG T D+S + + + GD+ LG + D L+ +
Sbjct: 162 ELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKG-- 217
Query: 319 IDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELC 378
A + + ++ + IS+ E
Sbjct: 218 ----SSYLADDIIIHRKDNNYLKQRINDENKISI---------------------VTEAM 252
Query: 379 SDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN---VTVN 435
++ L +L+ V +L + F V+++GG + + + VKK T T N
Sbjct: 253 NEALRKLEQRVLNTLNE----FSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNN 306
Query: 436 PDEVVALGAAVQA 448
+ G +
Sbjct: 307 SQYDLVNGMYLIG 319
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 2e-26
Identities = 54/383 (14%), Positives = 116/383 (30%), Gaps = 89/383 (23%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
VVG+D+G ++ GK I PS A T+ +G +
Sbjct: 22 VVVGLDVGYGDT-KVIGVDGKRIIF---------PSRWAVTETESWGIGGKIPVLSTDGG 71
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRK 196
+ F + + + RV + + + A++E +
Sbjct: 72 QTKFI------------YGKYASGNNIRVPQGDG------------RLASKEAFPLIAAA 107
Query: 197 LVDDASKFLNDSVTKAVVT-VPAYFNDSQRTATKDA------------GRIAGLDVLRII 243
L + V + + P D + A K+A G + ++ R+I
Sbjct: 108 LWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLI 167
Query: 244 NEPTAASLAY-----GFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGG 298
P A G ++ +V D+G T DV + + D V+ S +G
Sbjct: 168 MRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGV 226
Query: 299 DDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITAT 358
D + + ++ G + D L + A +
Sbjct: 227 GDAISAL----SRKIAKETGFVVPFD------LAQEALSHPVMFR--------------- 261
Query: 359 ADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAV 418
+ ++ E+L + +++ ++ + + + +I VGG + + +
Sbjct: 262 --QKQVGGPEVSGPILEDLANRIIENIRLNLRGEV-------DRVTSLIPVGGGSNL--I 310
Query: 419 QELVKKMTGREPNVTVNPDEVVA 441
+ +++ D A
Sbjct: 311 GDRFEEIAPGTLVKIKPEDLQFA 333
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 6e-16
Identities = 46/389 (11%), Positives = 103/389 (26%), Gaps = 82/389 (21%)
Query: 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVV 134
N V+ +D G N V + ++ PS + N + +
Sbjct: 3 NVYVMALDFG--NGFVKGKINDEKFVI---------PSRIGRKTNENNQLKGFVD----- 46
Query: 135 NPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVL 194
N + + +++ + + + + N + + + V
Sbjct: 47 NKLDVSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDR---------YDIKSFKDLVE 97
Query: 195 RKLVDDASKFLNDSVTKAVVT---VPAYFNDSQRTATK-----------DAGRIAGLDVL 240
+ A + + V + T D Q K + + +
Sbjct: 98 CSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGV 157
Query: 241 RIINEPTAASLAYGFEKKN------NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDT 294
+I+ +P L E V D G GT + + V S
Sbjct: 158 KIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTY---QNMKRVEEESFVI 214
Query: 295 HLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPF 354
+ G DF KRI ++ + + +K + + +K ++
Sbjct: 215 NKGTIDFYKRIASHVSKKSEGASITPRMIEKGLEYKQCKLNQKTVIDFKDE--------- 265
Query: 355 ITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTR 414
F + L++ + + E ++ + +D +I+ GG
Sbjct: 266 -------------------FYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGAN 302
Query: 415 IPAVQELVKKMTGREPNVTVNPDEVVALG 443
I + + + G
Sbjct: 303 I--HFDSLSHYYSDVFEKADDSQFSNVRG 329
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 1e-15
Identities = 49/384 (12%), Positives = 107/384 (27%), Gaps = 87/384 (22%)
Query: 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVV 134
NE V+ +D G + + T + + + ++G +
Sbjct: 6 NEYVMTLDAGKYETKLIGKNKKGTTEDIK---RVIFKTKIYNLEDGYIDIEG-------- 54
Query: 135 NPENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVL 194
N K ++ + E+ + S + + AI + + +
Sbjct: 55 NSHKIELDGKEYL------IGEQGVEDSSETSKTNLIHKLAAYTAITQVLDSNK------ 102
Query: 195 RKLVDDASKFLNDSVTKAVVTVPA--YFNDSQRTATKDA------------GRIAGLDVL 240
++ + V+ P N + +D + ++
Sbjct: 103 ------------NNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEIT 150
Query: 241 RIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGD 299
I + + + + ++ N+ + V D GG S+ S G
Sbjct: 151 DITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLY---RNCVVNPSERFIEEHGVK 207
Query: 300 DFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATA 359
D R+ D L +L+ ++QA L K E+ + + T I
Sbjct: 208 DLIIRVGDALTDLN----NGNLITNEQAESALNNGYMKKGGEIDTESSTVI--------- 254
Query: 360 DGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQ 419
+ ++ + LD +I +GG+T+ ++
Sbjct: 255 -------------------KKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LK 293
Query: 420 ELVKKMTGREPNVTVNPDEVVALG 443
E + K +T N G
Sbjct: 294 EQISKTYPNNSIITNNSQWTTCEG 317
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 3e-13
Identities = 60/407 (14%), Positives = 125/407 (30%), Gaps = 121/407 (29%)
Query: 299 DDFD-KRIVDWLASNFKRDEGIDLLKDKQALQR--------LTETAEKAKMELSSLTQTN 349
D+FD K + D S ++E ++ K A+ L++ E + + + + N
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 350 ISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILV 409
F+ + + ++ + E DRL + F + V
Sbjct: 91 --YKFL-MSPIKTEQRQPSMMTRMYIE----QRDRLYNDNQ--------VFAKYN-V--- 131
Query: 410 GGSTRIPAVQELVKKMTG--REPNVTVNPDEVVALGAAVQAG----VLAGDV-SDIVLLD 462
+R+ +L + + NV ++ G G +A DV +
Sbjct: 132 ---SRLQPYLKLRQALLELRPAKNVLID-------G---VLGSGKTWVALDVCLSYKVQC 178
Query: 463 VTP-----LSLG--------LETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINV 509
L+L LE L ++ +I P T+ S + Q E+
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRR 236
Query: 510 LQGEREF---------VRDNKSLGSFRL--------------DGIPPAPRGVPQIE---V 543
L + + V++ K+ +F L D + A ++ +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 544 KFDID-ANGILSVSAVDKGTGKKQD------------ITITGASTLPNDEVQRMVQEAER 590
D +L +D + QD ++I S ++ + +
Sbjct: 297 TLTPDEVKSLLL-KYLDC---RPQDLPREVLTTNPRRLSIIAES------IRDGLATWDN 346
Query: 591 FAKEDKEK-RDAIDTK-NQADSVVYQTEKQLKELG----D-KVPAEV 630
+ + +K I++ N + Y+ K L +P +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPSAHIPTIL 391
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 9e-11
Identities = 74/453 (16%), Positives = 143/453 (31%), Gaps = 94/453 (20%)
Query: 1 MACSSAA-QIHFLGNISFSSRKNSKTGRENTAGSRNLFFGQRVGGNRFGSVPSAAFLRLK 59
C S Q I + + KN + + L + S LR+
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 60 S-ENRGRRYVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK 118
S + RR + N +V +++ A A ++T T V
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAK-AWNAFNLSCKILLT------TRFKQVT--- 278
Query: 119 NGDRLVGQIAKRQAVVNPENTF--------FSVKRFIGRKMVEVDEESKQVSYRVV---- 166
D L ++ + T +++ + ++ E + R +
Sbjct: 279 --DFLSAATTTHISLDHHSMTLTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 167 ---RDENG---NVK-LECPAIGKQFAA--EEISAQVLRKLVDDASKFLNDS-VTKAVVTV 216
RD N K + C + + + RK+ D S F + + ++++
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 217 PAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNE-TILVFDLGGGTFDV 275
+ D ++ DV+ ++N+ SL EK+ E TI + + ++
Sbjct: 395 --IWFDVIKS-----------DVMVVVNKLHKYSLV---EKQPKESTISIPSI---YLEL 435
Query: 276 SVLEVGDGV--------FEVLSTSGDTHLGGDDFDKRIVDWLA---SNFKRDEGIDLLKD 324
V + + + T L D+ + N + E + L +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 325 --------KQALQRLTETAEKAKME-LSSLTQTNISLPFITATADGPKHIDTTLTRVKFE 375
+Q + R TA A L++L Q P+I + +E
Sbjct: 496 VFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYIC------DNDPK------YE 542
Query: 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVIL 408
L + +LD L E +L +K + DL + L
Sbjct: 543 RLVNAILDFLPKI-EENLICSK--YTDLLRIAL 572
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 55/382 (14%), Positives = 112/382 (29%), Gaps = 54/382 (14%)
Query: 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAY---TKNGDRLVGQI--AK 129
+ +G+++G + + + G P + A R TP + L +I
Sbjct: 12 RVEALGLEIGASALKLVEVSGNPPAL--KALASRPTPPGLLMEGMVAEPAALAQEIKELL 69
Query: 130 RQAVVNPENTFFSVK-RFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEE 188
+A ++ + + ++V + + VR E I
Sbjct: 70 LEARTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEAVRWEAER------YIPFPIDEVV 123
Query: 189 ISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTA 248
+ L L + + V V A + AGL + + +P A
Sbjct: 124 LDFAPLTPLSEVQEG---EQVQVMVAAARQEAVAGVLEALRG----AGLVPVVLDVKPFA 176
Query: 249 ASLAYGF--EKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 306
++ + LV D+G + + +L + L G DF + I
Sbjct: 177 GLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA-----VRVLTLSGKDFTEAIA 231
Query: 307 DWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHID 366
+ AE+ K T + +
Sbjct: 232 RSFNLDL-------------------LAAEEVKRTYGMATLPTEDEELLLDFDAERE--- 269
Query: 367 TTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDL--DEVILVGGSTRIPAVQELVKK 424
+ + + +L L + SL ++ ++ + L+GG +++ + L+
Sbjct: 270 -RYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTD 328
Query: 425 MTGREPNVTVNPDEVVALGAAV 446
G VNP E VA+
Sbjct: 329 TLGVNLEP-VNPWEAVAVDPKR 349
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 6e-09
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 588 AERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKE--LGDKVPAEVKGKVEGKLKELKDAI 645
+ + +S + ++ +++ L DK+ E K K+E K E+ +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 646 AEG---STQAMKDTMAALNQEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGA 693
+ + L + LY Q GA PGA P A
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLY-QSAGGAPPGAAPGGAAGGAG 112
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Length = 113 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 6e-07
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 6/105 (5%)
Query: 595 DKEKRDAIDTKNQADSVVYQTEKQLKE--LGDKVPAEVKGKVEGKLKELKDAIAEG---S 649
+ + + KN +S + + +++ L K+ K KV K +E+ +
Sbjct: 2 NAA-AERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAE 60
Query: 650 TQAMKDTMAALNQEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGAS 694
+ L Q + LY G G G S
Sbjct: 61 KDEFEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPKGGSGS 105
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 Length = 113 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 6e-07
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 5/104 (4%)
Query: 602 IDTKNQADSVVYQTEKQLKE--LGDKVPAEVKGKVEGKLKELKDAIAE---GSTQAMKDT 656
+ +S + + +++ L K+ E K K+ K E+ + + + +
Sbjct: 3 PRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQ 62
Query: 657 MAALNQEVMQLGQSLYNQPGAGAAPGAGPTPGAEAGASDSSNKG 700
L + + LY G G PG A S ++ G
Sbjct: 63 QKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSG 106
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Length = 344 | Back alignment and structure |
|---|
Score = 50.5 bits (122), Expect = 9e-07
Identities = 72/275 (26%), Positives = 110/275 (40%), Gaps = 77/275 (28%)
Query: 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRL--VGQIAKRQAVVNP 136
+GIDLGT N+ V G IV N E PSV+A + VG A
Sbjct: 6 IGIDLGTANTLVFLRGKG---IVVN-E-----PSVIAIDSTTGEILKVGLEA-------- 48
Query: 137 ENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECP----AIGKQFAAEEISAQ 192
K IG+ +K P I A ++
Sbjct: 49 -------KNMIGK-------------------TPATIKAIRPMRDGVI----ADYTVALV 78
Query: 193 VLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLA 252
+LR ++ A +N + V+ VP D +R A DAG AG + +I EP AA++
Sbjct: 79 MLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIG 138
Query: 253 YG---FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL 309
E N +V D+GGGT +V+V+ +G + V S + GD+ D+ IV ++
Sbjct: 139 SNLNVEEPSGN---MVVDIGGGTTEVAVISLG-SI--VTWES--IRIAGDEMDEAIVQYV 190
Query: 310 ASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSS 344
++ G +R TAE+ K+E+ +
Sbjct: 191 RETYRVAIG----------ER---TAERVKIEIGN 212
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 392 SLRDAKLSFKDL----DEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQ 447
S RD + L ++L+GG + A++ L + G DE VA+GAA Q
Sbjct: 410 SQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSILGM-DVTRPATDEYVAIGAARQ 468
Query: 448 AGVLAGDVSDIVLLDVTP 465
A + ++ +T
Sbjct: 469 AAWVLSGETEPPAWQLTI 486
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 392 SLRDAKLSFKDL----DEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQ 447
+L D V L+GG R ++++ ++G++ + D ALGAA
Sbjct: 372 ALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431
Query: 448 AGVLAGDVSDI 458
A + A +
Sbjct: 432 AQIAANPEKSL 442
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Length = 419 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 40/398 (10%), Positives = 105/398 (26%), Gaps = 94/398 (23%)
Query: 75 NEKVVGIDLGTTN--SAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQA 132
ID+G+ V + + + S G
Sbjct: 7 TVFYTSIDIGSRYIKGLVLGKRDQEWEAL----AFSSVKS------RG-------LDEGE 49
Query: 133 VVNPENTFFSVKRFIGR--KMVEVDEESKQV---SYRVVRDENGNVKLECPAIGKQFAAE 187
+ + SV + + ++ S V S E+ ++ + +
Sbjct: 50 IKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKR----- 104
Query: 188 EISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFN-DSQR--------------------T 226
I+ +L ++ +A + L ++ + + D +R
Sbjct: 105 SITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIV 164
Query: 227 ATKDAGR-------IAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLE 279
++ + + + + + ++V +LG + +
Sbjct: 165 VPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYK 224
Query: 280 VGDGVF-EVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKA 338
G + + +G K + L E +E+
Sbjct: 225 NGVPIKISYVP------VGMKHVIKDV-------------------SAVLDTSFEESERL 259
Query: 339 KMELSSLTQTNIS---LPFITATADGPKHID-TTLTRV---KFEELCSDLLDRLKTPVET 391
+ + ++ + + + K L+ + + E+ S + E
Sbjct: 260 IITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFR---EV 316
Query: 392 SLRDAKLSFKDLDE-VILVGGSTRIPAVQELVKKMTGR 428
+ + + V+L GG +IP + EL ++
Sbjct: 317 EAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKS 354
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 714 | |||
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 100.0 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 100.0 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 100.0 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.97 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.97 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.97 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.96 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.96 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.96 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.95 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.94 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.94 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.94 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.9 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.89 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.83 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.79 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.73 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.64 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 99.59 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.55 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 99.55 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 99.48 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 99.42 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 99.29 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 99.28 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 99.25 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 98.76 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 98.15 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 97.2 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 97.03 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 96.66 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 96.29 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 96.05 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 96.04 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 96.0 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 95.93 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 95.87 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 95.78 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 95.77 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 95.75 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 95.72 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 95.68 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 95.64 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 95.54 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 95.39 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 95.36 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 95.3 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 95.2 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 95.07 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 95.04 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 94.99 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 94.9 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 94.89 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 94.86 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 94.45 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 94.29 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 94.05 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 93.99 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 93.94 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 93.64 | |
| 2ap1_A | 327 | Putative regulator protein; zinc binding protein, | 93.52 | |
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 92.58 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 92.12 | |
| 1sz2_A | 332 | Glucokinase, glucose kinase; ATP-dependent, glucos | 91.86 | |
| 1zbs_A | 291 | Hypothetical protein PG1100; alpha-beta protein., | 91.62 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 90.65 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 89.18 | |
| 3bex_A | 249 | Type III pantothenate kinase; actin-like fold, ATP | 88.56 | |
| 1zc6_A | 305 | Probable N-acetylglucosamine kinase; NESG, Q7NU07_ | 86.84 | |
| 3ven_A | 576 | O-carbamoyltransferase TOBZ; antibiotic biosynthes | 86.11 | |
| 3o8m_A | 485 | Hexokinase; rnaseh-like fold, glycolysis, glucose | 85.16 | |
| 3qbx_A | 371 | Anhydro-N-acetylmuramic acid kinase; acetate and s | 83.74 | |
| 2yhx_A | 457 | Hexokinase B; transferase(phosphoryl,alcohol accep | 82.99 | |
| 1woq_A | 267 | Inorganic polyphosphate/ATP-glucomannokinase; tran | 82.75 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 82.59 |
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-110 Score=966.82 Aligned_cols=597 Identities=55% Similarity=0.880 Sum_probs=575.3
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
|+.+||||||||||+||++++|.++++.|..|++++||+|+|.+++++++|..|+.+...+|.++++++||+||+.+++
T Consensus 1 M~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 80 (605)
T 4b9q_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (605)
T ss_dssp -CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSH
T ss_pred CCcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCH
Confidence 4579999999999999999999999999999999999999999888999999999999999999999999999999886
Q ss_pred -hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
++.+.+.+||.++...++.+.+.+. ++.++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++|+
T Consensus 81 ~v~~~~~~~p~~~~~~~~g~~~~~~~--~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa 158 (605)
T 4b9q_A 81 EVQRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158 (605)
T ss_dssp HHHHHHTTCSSEEEECTTSBEEEEET--TEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 8889999999999988888888775 6789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccCC-CceEEEEEeCCcceEEEEEEEcC----ceEEEEEecCCCCCChhHHHHHHHH
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGD----GVFEVLSTSGDTHLGGDDFDKRIVD 307 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~~-~~~vLVvD~GgGT~Dvsv~~~~~----~~~~vl~~~gd~~lGG~d~D~~l~~ 307 (714)
++|||+++++++||+|||++|+..... +.++||||+||||||+|++++.+ +.++++++.++.++||++||+.|++
T Consensus 159 ~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~ 238 (605)
T 4b9q_A 159 RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLIN 238 (605)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred HHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHH
Confidence 999999999999999999999887643 68999999999999999999988 9999999999999999999999999
Q ss_pred HHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHH
Q 005099 308 WLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKT 387 (714)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~ 387 (714)
|+.++|+.+++.++..+++++.+|+.+||++|+.||...+..+.++.+..+..++.++.++|||++|+++++|+++++..
T Consensus 239 ~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~ 318 (605)
T 4b9q_A 239 YLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIE 318 (605)
T ss_dssp HHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877766667899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCC
Q 005099 388 PVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLS 467 (714)
Q Consensus 388 ~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~s 467 (714)
+|+++|+++++...+|+.|+||||+|++|+|+++|+++||.++....||++|||+|||++|+.+++..+++++.|++|++
T Consensus 319 ~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~~~~~~~~l~dv~p~s 398 (605)
T 4b9q_A 319 PLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLS 398 (605)
T ss_dssp HHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHHTSSCSEEEECBCSSC
T ss_pred HHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhcCCCCceEEEeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEe
Q 005099 468 LGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDI 547 (714)
Q Consensus 468 lgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~i 547 (714)
||+++.+|.|.+|||||++||++++++|++..|+|+.+.|+|||||+.++.+|..||+|.|.++||+|+|.++|+|+|++
T Consensus 399 lgie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~i 478 (605)
T 4b9q_A 399 LGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDI 478 (605)
T ss_dssp EEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEE
T ss_pred EEEEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCC
Q 005099 548 DANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVP 627 (714)
Q Consensus 548 d~~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~ 627 (714)
|.||+|+|++.++.||++.+++|.+..+||++||++|++++++++++|++.+++.++||+||+|+|++++.|+++.++++
T Consensus 479 d~~gil~v~a~~~~tg~~~~i~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~ 558 (605)
T 4b9q_A 479 DADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLP 558 (605)
T ss_dssp CTTSCEEEEEEETTTCCEECCEEESCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred cCCcEEEEEEEecCCCcEEEEEecCCCCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 628 AEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 628 ~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
+++++++.+.++++++||+.+|.++|++++++|++.+.++..++|+
T Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 4b9q_A 559 ADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999996
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-108 Score=947.75 Aligned_cols=596 Identities=55% Similarity=0.887 Sum_probs=569.0
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh--
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE-- 153 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~-- 153 (714)
+.+||||||||||+||++.+|.++++.|++|++++||+|+|.++++++||..|+.+...+|+++++++||+||+.+++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~ 81 (605)
T 2kho_A 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp --CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTT
T ss_pred CCEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHH
Confidence 468999999999999999999999999999999999999998878999999999999999999999999999999875
Q ss_pred hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHH
Q 005099 154 VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGR 233 (714)
Q Consensus 154 v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~ 233 (714)
++.+.+.+||.++.+.+|.+.+.+. ++.++|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++|++
T Consensus 82 v~~~~~~~p~~~~~~~~g~~~i~~~--g~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~ 159 (605)
T 2kho_A 82 VQRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGR 159 (605)
T ss_dssp HHHHHHHCSSCEEECTTSBEEEEET--TEEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEECCCCceEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHH
Confidence 7778888999998888888888874 57899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeEEechhHHHHHHcccccC-CCceEEEEEeCCcceEEEEEEEc----CceEEEEEecCCCCCChhHHHHHHHHH
Q 005099 234 IAGLDVLRIINEPTAASLAYGFEKK-NNETILVFDLGGGTFDVSVLEVG----DGVFEVLSTSGDTHLGGDDFDKRIVDW 308 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~~~-~~~~vLVvD~GgGT~Dvsv~~~~----~~~~~vl~~~gd~~lGG~d~D~~l~~~ 308 (714)
+|||+++++++||+|||++|+.+.. .+.++||||+||||||+|++++. ++.++++++.|+.++||++||+.|++|
T Consensus 160 ~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~ 239 (605)
T 2kho_A 160 IAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239 (605)
T ss_dssp TTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHH
T ss_pred HcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHHH
Confidence 9999999999999999999998865 57899999999999999999998 789999999999999999999999999
Q ss_pred HHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 005099 309 LASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTP 388 (714)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~ 388 (714)
+.++|+++++.++..+++++.+|+.+||++|+.||...++.+.++.+.++.+|+.++.++|||++|+++|+|+++++..+
T Consensus 240 l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~ 319 (605)
T 2kho_A 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEP 319 (605)
T ss_dssp HHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 99999998898998999999999999999999999999899999887765445567788999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCc
Q 005099 389 VETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSL 468 (714)
Q Consensus 389 i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~sl 468 (714)
|+++|+++++.+.+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++.++++++.|++|++|
T Consensus 320 i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~~~~~~~l~dv~p~sl 399 (605)
T 2kho_A 320 LKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSL 399 (605)
T ss_dssp HHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTTSCCCCCCSBCCCCCE
T ss_pred HHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhcCCccCceEEeeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred ceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEec
Q 005099 469 GLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 548 (714)
Q Consensus 469 gi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id 548 (714)
|+++.+|.|.+||+||++||++++++|++..|+|+.+.|+|||||+.++.+|..||+|.|.++||.|+|.++|+|+|++|
T Consensus 400 gi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 479 (605)
T 2kho_A 400 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479 (605)
T ss_dssp EEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEEC
T ss_pred cccccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCH
Q 005099 549 ANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPA 628 (714)
Q Consensus 549 ~~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~ 628 (714)
.||+|+|++.++.||++.+++|+....||++||++|++++++++++|++.+++.++||+||+|+|+++++|+++.+++++
T Consensus 480 ~~gil~v~a~~~~tg~~~~i~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~ 559 (605)
T 2kho_A 480 ADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPA 559 (605)
T ss_dssp TTSCEEEEEEETTTCCEEEEEECTTSSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred CCCceeEEEEEcCCCceeecccccccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 629 EVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 629 ~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
++++++.+.|+++++||++++.++|++++++|++.+++|..|+|+
T Consensus 560 ~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 2kho_A 560 DDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999889999999999999999999999986
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-104 Score=921.54 Aligned_cols=590 Identities=26% Similarity=0.421 Sum_probs=549.5
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh--
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE-- 153 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~-- 153 (714)
+.+||||||||||+||++.+|.++++.|+.|++.+||+|+|.++ +++||..|+.+...+|.++++++||+||+.+++
T Consensus 2 m~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 80 (675)
T 3d2f_A 2 STPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK-NRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPD 80 (675)
T ss_dssp CCCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSS-SEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTT
T ss_pred CcEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCC-cEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHH
Confidence 35899999999999999999999999999999999999999876 899999999999999999999999999999875
Q ss_pred hhhhhccceeEEEEcCCCcEEEEe--CCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHH
Q 005099 154 VDEESKQVSYRVVRDENGNVKLEC--PAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDA 231 (714)
Q Consensus 154 v~~~~~~~~~~v~~~~~g~~~v~~--~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~A 231 (714)
++.+.++|||.++...+|.+.+.+ .++.+.++|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 81 v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 160 (675)
T 3d2f_A 81 FEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADA 160 (675)
T ss_dssp HHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 788889999999988788776544 444578999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeEEechhHHHHHHccccc-------CCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHH
Q 005099 232 GRIAGLDVLRIINEPTAASLAYGFEK-------KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 304 (714)
Q Consensus 232 a~~AGl~~~~li~Ep~AAAlay~~~~-------~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~ 304 (714)
+++|||++++|++||+|||++|+... ..+.++||||+||||||+|++++.++.++|+++.++.++||++||+.
T Consensus 161 a~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~ 240 (675)
T 3d2f_A 161 ARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLA 240 (675)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHH
T ss_pred HHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHHH
Confidence 99999999999999999999998754 24688999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHH
Q 005099 305 IVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDR 384 (714)
Q Consensus 305 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~ 384 (714)
|++|+..+|++++++++..+++++.+|+.+||++|+.||...++.+.++.+..+ .++.++|||++|+++|+|++++
T Consensus 241 l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g----~~~~~~itr~~fe~l~~~l~~~ 316 (675)
T 3d2f_A 241 ITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMND----VDVSSQLSREELEELVKPLLER 316 (675)
T ss_dssp HHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSS----CCEEEEEEHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccC----ceEEEEEeHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988888888877655 6788999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC--CCCcEEEe
Q 005099 385 LKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD--VSDIVLLD 462 (714)
Q Consensus 385 i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~--~~~~~~~d 462 (714)
+..+|+++|+++++++.+|+.|+||||+|++|+|++.|++.||.++..+.||++|||+|||++|+.|++. ++++.+.|
T Consensus 317 i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ls~~~~v~~~~l~D 396 (675)
T 3d2f_A 317 VTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFED 396 (675)
T ss_dssp TTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHTCSSCCCCCCEEEE
T ss_pred HHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHHhCCCCcccceEEEe
Confidence 9999999999999999999999999999999999999999999988899999999999999999999986 68999999
Q ss_pred eccCCcceeeeCCe----eEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccc-cCceeeEEEEeCCCCCCCC
Q 005099 463 VTPLSLGLETLGGV----MTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVR-DNKSLGSFRLDGIPPAPRG 537 (714)
Q Consensus 463 v~~~slgi~~~~~~----~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~-~n~~lg~~~l~~~~~~~~g 537 (714)
++|+|||+++.++. +.+||+||++||++++++|++..|+| +.+. |+|++.++. +|..||+|.|.++||.|+|
T Consensus 397 v~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~--~~~~-~~ge~~~~~~~n~~lg~f~l~gi~~~~~g 473 (675)
T 3d2f_A 397 IHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS--MAAS-YTDITQLPPNTPEQIANWEITGVQLPEGQ 473 (675)
T ss_dssp EECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE--EEEE-ESCGGGSCTTCCSEEEEEEEECCCCCSSC
T ss_pred eeecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce--EEEE-EcCCcccccccCceeeEEEecCcCCCCCC
Confidence 99999999998874 99999999999999999999876643 3332 789999887 9999999999999999999
Q ss_pred C-CeeEEEEEecCCceEEEEEE----------EcCCCceeeeEEccC-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005099 538 V-PQIEVKFDIDANGILSVSAV----------DKGTGKKQDITITGA-STLPNDEVQRMVQEAERFAKEDKEKRDAIDTK 605 (714)
Q Consensus 538 ~-~~i~v~f~id~~gil~v~a~----------~~~t~~~~~i~i~~~-~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~ 605 (714)
. ++|+|+|++|.||+|+|++. ++.||++.+++|+.. ..||++||++|+++++++..+|++.+++.++|
T Consensus 474 ~~~~i~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~ 553 (675)
T 3d2f_A 474 DSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRK 553 (675)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7 49999999999999999995 789999999999987 58999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 606 NQADSVVYQTEKQLKE-LGDKVPAEVKGKVEGKLKELKDAIAEG----STQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 606 n~lE~~i~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
|+||+|+|++|++|++ +.+++++++++++.+.|+++++||+++ ..++|++++++|++.++||..|++.
T Consensus 554 n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~~~~~i~~r~~e 626 (675)
T 3d2f_A 554 NTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLA 626 (675)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 788999999999999999999999854 3899999999999999999988775
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-97 Score=852.61 Aligned_cols=539 Identities=53% Similarity=0.841 Sum_probs=508.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
|+.+||||||||||+||++.+|.++++.|++|++++||+|+|.++ +++||..|+.+...+|+++++++||+||+.+++
T Consensus 3 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 81 (554)
T 1yuw_A 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDA 81 (554)
T ss_dssp SCCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSS-CEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCS
T ss_pred CCCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCC-cEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcH
Confidence 456899999999999999999999999999999999999999876 899999999999999999999999999999875
Q ss_pred -hhhhhccceeEEEEcCCCcEE--EEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGNVK--LECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKD 230 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~~~--v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~ 230 (714)
++...+.|||.++.. +|... +.+.+..+.++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++
T Consensus 82 ~v~~~~~~~p~~v~~~-~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~ 160 (554)
T 1yuw_A 82 VVQSDMKHWPFMVVND-AGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKD 160 (554)
T ss_dssp HHHHHHTTCSSEEEEE-TTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEec-CCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 788889999999853 55544 45555567899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeEEechhHHHHHHcccccC--CCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHH
Q 005099 231 AGRIAGLDVLRIINEPTAASLAYGFEKK--NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 308 (714)
Q Consensus 231 Aa~~AGl~~~~li~Ep~AAAlay~~~~~--~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~ 308 (714)
|++.||++++++++||+|||++|+.+.. .+.++||||+||||||+|++++.++.++++++.++.++||++||+.|++|
T Consensus 161 A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~ 240 (554)
T 1yuw_A 161 AGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNH 240 (554)
T ss_dssp HHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred HHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999998754 36899999999999999999999999999999999999999999999999
Q ss_pred HHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 005099 309 LASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTP 388 (714)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~ 388 (714)
+.++|+++++.++..+++++.+|+.+||++|+.||...+..+.++.+..+ .++...|+|++|+++++|+++++.++
T Consensus 241 l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g----~~~~~~ltr~~~e~l~~~~~~~i~~~ 316 (554)
T 1yuw_A 241 FIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRGTLDP 316 (554)
T ss_dssp HHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSS----CCEEEEEEHHHHHHHTHHHHHHTTHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCC----ceEEEEEEHHHHHHHHHHHHHHHHHH
Confidence 99999999998988899999999999999999999999888998877654 67889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcC-CCCCcCCCChhHHHhHHHHHHhHhhCC----CCCcEEEee
Q 005099 389 VETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTG-REPNVTVNPDEVVALGAAVQAGVLAGD----VSDIVLLDV 463 (714)
Q Consensus 389 i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg-~~~~~~~np~eaVA~GAa~~aa~ls~~----~~~~~~~dv 463 (714)
|+++|+++++.+.+|+.|+||||+|++|+|++.|++.|+ .++..+.||++|||+|||++|+.+++. ++++++.|+
T Consensus 317 i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv 396 (554)
T 1yuw_A 317 VEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDV 396 (554)
T ss_dssp HHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCB
T ss_pred HHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEEe
Confidence 999999999999999999999999999999999999995 788899999999999999999999884 678999999
Q ss_pred ccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEE
Q 005099 464 TPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEV 543 (714)
Q Consensus 464 ~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v 543 (714)
+|++||+++.+|.|.++|+||++||++++++|++..|+|+.+.|.|||||+....+|..||+|.|.++||.|+|.++|+|
T Consensus 397 ~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v 476 (554)
T 1yuw_A 397 TPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476 (554)
T ss_dssp CSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCEEE
T ss_pred eeeEEEEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCcccccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCceEEEEEEEcCCCceeeeEEccC-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHH
Q 005099 544 KFDIDANGILSVSAVDKGTGKKQDITITGA-STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQL 619 (714)
Q Consensus 544 ~f~id~~gil~v~a~~~~t~~~~~i~i~~~-~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l 619 (714)
+|++|.||+|+|++.++.||++.+++|..+ +.||++||++|++++++++++|++.+++.++||+||+|+|++|++|
T Consensus 477 ~f~id~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l 553 (554)
T 1yuw_A 477 TFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553 (554)
T ss_dssp EEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECSSCCSCSCCCC
T ss_pred EEEEccCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988 7799999999999999999999999999999999999999887654
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-91 Score=792.67 Aligned_cols=508 Identities=64% Similarity=1.002 Sum_probs=476.9
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhh
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVD 155 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~ 155 (714)
+.+||||||||||+||++.+|.+++++|++|++++||+|+| .+++++||+.|+.+...+| ++++++||+||+++.
T Consensus 2 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~-~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~--- 76 (509)
T 2v7y_A 2 SKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK--- 76 (509)
T ss_dssp CCEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEE-SSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC---
T ss_pred CCEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEE-CCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE---
Confidence 46999999999999999999999999999999999999999 4568999999999999999 999999999998542
Q ss_pred hhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHc
Q 005099 156 EESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIA 235 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~A 235 (714)
+ .+. ++.++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++|++.|
T Consensus 77 ---------~----------~~~--g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~A 135 (509)
T 2v7y_A 77 ---------V----------EIE--GKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIA 135 (509)
T ss_dssp ---------E----------EET--TEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred ---------E----------EEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 1 122 4568899999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcccc
Q 005099 236 GLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315 (714)
Q Consensus 236 Gl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~ 315 (714)
|++++++++||+|||++|+.+...+.++||||+||||||++++++.++.++++++.++.++||++||+.|++|+.++|++
T Consensus 136 Gl~~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~ 215 (509)
T 2v7y_A 136 GLEVERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQ 215 (509)
T ss_dssp TCEEEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877788999999999999999999998999999999999999999999999999999998
Q ss_pred ccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005099 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRD 395 (714)
Q Consensus 316 ~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~ 395 (714)
+++.++..+++++.+|+.+||++|+.||...+..+.++.+.++.+|+.++.++|||++|+++++|+++++.++|+++|++
T Consensus 216 ~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~ 295 (509)
T 2v7y_A 216 EHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQD 295 (509)
T ss_dssp HHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHH
T ss_pred HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999988899998876644444577889999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCCCCCcEEEeeccCCcceeeeCC
Q 005099 396 AKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGG 475 (714)
Q Consensus 396 a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~~~~~~~~dv~~~slgi~~~~~ 475 (714)
+++.+.+|+.|+||||+|++|+|++.|++.|+.++....||+++||+|||++|+.+++.++++++.|++|++||+++.++
T Consensus 296 a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~~~~~~~~~dv~p~slgi~~~~~ 375 (509)
T 2v7y_A 296 AGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGG 375 (509)
T ss_dssp HTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHTCCCCCCCCCBCSSEEEEEETTT
T ss_pred cCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcCCccCceEEEeeccccceeecCC
Confidence 99988999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred eeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCeeEEEEEecCCceEEE
Q 005099 476 VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 555 (714)
Q Consensus 476 ~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~id~~gil~v 555 (714)
.|.+||+||++||++++++|++..|+|+.+.|.+||||+....+|..||+|.|.++||.|+|.++|+|+|++|.||+|+|
T Consensus 376 ~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v 455 (509)
T 2v7y_A 376 VFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHV 455 (509)
T ss_dssp EEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTSCEEE
T ss_pred ceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 005099 556 SAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQAD 609 (714)
Q Consensus 556 ~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE 609 (714)
++.++.||++.+++|..+..||++||++|++++++++.+|++.+++.++||+||
T Consensus 456 ~a~~~~~g~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 456 RAKDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp EEEETTTCCEEEEEECSSCSCCSHHHHHHHHHHHHSCGGGGGGGGCCCC-----
T ss_pred EEEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHhhcC
Confidence 999999999999999998889999999999999999999999999999999986
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=559.76 Aligned_cols=373 Identities=53% Similarity=0.818 Sum_probs=348.2
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh-
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE- 153 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~- 153 (714)
.+.+||||||||||+||++.+|.++++.|+.|++++||+|+|.++ +++||..|+.+...+|.++++++||+||+.+++
T Consensus 22 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~ 100 (404)
T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDA 100 (404)
T ss_dssp -CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-CEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSH
T ss_pred cCCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCC-CEEecHHHHHhhHhChhhhHHHHHHHhCCCCCcH
Confidence 457999999999999999999999999999999999999999887 899999999999999999999999999999876
Q ss_pred -hhhhhccceeEEEEcCCCc--EEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHH
Q 005099 154 -VDEESKQVSYRVVRDENGN--VKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKD 230 (714)
Q Consensus 154 -v~~~~~~~~~~v~~~~~g~--~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~ 230 (714)
++...+.|||.+.. .++. +.+.+.++...++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 101 ~~~~~~~~~p~~~~~-~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~ 179 (404)
T 3i33_A 101 TVQSDMKHWPFRVVS-EGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKD 179 (404)
T ss_dssp HHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHhhCCceEEc-cCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHH
Confidence 77888999999886 4444 4455554457899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeEEechhHHHHHHcccccC----CCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHH
Q 005099 231 AGRIAGLDVLRIINEPTAASLAYGFEKK----NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 306 (714)
Q Consensus 231 Aa~~AGl~~~~li~Ep~AAAlay~~~~~----~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~ 306 (714)
|++.||++++.+++||+|||++|+.... .+..+||||+||||||++++++.++.++++++.++..+||.+||+.|.
T Consensus 180 a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 259 (404)
T 3i33_A 180 AGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 259 (404)
T ss_dssp HHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHH
T ss_pred HHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999999998765 578999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHH
Q 005099 307 DWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLK 386 (714)
Q Consensus 307 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~ 386 (714)
+++.++|+.+++.++..+++.+.+|+.+||++|+.||......+.++.+.++ .++.+.|+|++|+++++++++++.
T Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g----~~~~~~i~r~~~~~~~~~~~~~i~ 335 (404)
T 3i33_A 260 SHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----VDFYTSITRARFEELNADLFRGTL 335 (404)
T ss_dssp HHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHHHHTH
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCC----ceeEEEEcHHHHHHHHHHHHHHHH
Confidence 9999999998898988899999999999999999999999988888877665 778899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc-CCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 387 TPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT-GREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 387 ~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f-g~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
++|.++|+++++...+|+.|+||||+|++|+|++.|++.| +.++....||+++||+|||++|+++++
T Consensus 336 ~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 336 EPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999899999999999999999999999999 788889999999999999999999876
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-63 Score=548.07 Aligned_cols=375 Identities=57% Similarity=0.935 Sum_probs=345.0
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh--
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE-- 153 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~-- 153 (714)
+.+||||||||||+||++.+|.++++.|++|++++||+|+|.++++++||..|+.+...+|+++++++|++||+.+++
T Consensus 2 ~~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 81 (383)
T 1dkg_D 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (383)
T ss_dssp -CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHH
T ss_pred CcEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHH
Confidence 468999999999999999999999999999999999999998877999999999999999999999999999998864
Q ss_pred hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHH
Q 005099 154 VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGR 233 (714)
Q Consensus 154 v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~ 233 (714)
++...+.+||.++.+.++...+..+ ++.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|++
T Consensus 82 ~~~~~~~~p~~~~~~~~~~~~~~~~--g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~ 159 (383)
T 1dkg_D 82 VQRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGR 159 (383)
T ss_dssp HHHHTTTCSSEEEECSSSBEEEEET--TEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEEcCCCcEEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 7777788999998888888877774 56899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeEEechhHHHHHHcccccC-CCceEEEEEeCCcceEEEEEEEc----CceEEEEEecCCCCCChhHHHHHHHHH
Q 005099 234 IAGLDVLRIINEPTAASLAYGFEKK-NNETILVFDLGGGTFDVSVLEVG----DGVFEVLSTSGDTHLGGDDFDKRIVDW 308 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~~~-~~~~vLVvD~GgGT~Dvsv~~~~----~~~~~vl~~~gd~~lGG~d~D~~l~~~ 308 (714)
.||++++.+++||+|||++|+.+.. .+.++||||+||||||+++++.. ++.++++++.++..+||++||+.|.++
T Consensus 160 ~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 239 (383)
T 1dkg_D 160 IAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239 (383)
T ss_dssp HTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHH
T ss_pred HcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999998754 57899999999999999999998 678899999998999999999999999
Q ss_pred HHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 005099 309 LASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTP 388 (714)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~ 388 (714)
+.++|+.+++.++..+++.+.+|+.+||++|+.|+...+..+.++.+.+..+|+.++.++|+|++|+++++|+++++.+.
T Consensus 240 l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~ 319 (383)
T 1dkg_D 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEL 319 (383)
T ss_dssp HHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 99999888888888889999999999999999999988888888876654333356778999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhh
Q 005099 389 VETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLA 452 (714)
Q Consensus 389 i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls 452 (714)
|+++|+++++...+++.|+|+||+|++|+|++.|++.|+.++..+.||+++||+|||++|++|+
T Consensus 320 i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 320 LKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHhhC
Confidence 9999999999888999999999999999999999999999899999999999999999998764
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-63 Score=548.81 Aligned_cols=372 Identities=30% Similarity=0.493 Sum_probs=338.4
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhh
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVD 155 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~ 155 (714)
..+||||||||||+||++.+|.++++.|+.|.+++||+|+|.++ +++||..|..+...+|.++++++|+++|+.+++..
T Consensus 13 ~~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~ 91 (409)
T 4gni_A 13 RVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDG-DEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVD 91 (409)
T ss_dssp CCEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEETT-EEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCC
T ss_pred CcEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEECCC-cEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchh
Confidence 47999999999999999999999999999999999999999865 89999999999999999999999999999998744
Q ss_pred hhhccceeEEEEcCCCcEEEEeCC------CCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHH
Q 005099 156 EESKQVSYRVVRDENGNVKLECPA------IGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATK 229 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~~------~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~ 229 (714)
.....+++.+. ..+|.+.+.... ..+.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|+
T Consensus 92 ~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~ 170 (409)
T 4gni_A 92 PTHNHASAHPQ-EAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALI 170 (409)
T ss_dssp CGGGTTSCCCE-EETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHH
T ss_pred hhhhcccccee-cCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHH
Confidence 44444555543 345666655542 35689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeEEechhHHHHHHccccc---CCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHH
Q 005099 230 DAGRIAGLDVLRIINEPTAASLAYGFEK---KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 306 (714)
Q Consensus 230 ~Aa~~AGl~~~~li~Ep~AAAlay~~~~---~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~ 306 (714)
+|++.|||+++.+++||+|||++|+... ..+..+||||+||||||++++++.++.++++++.++..+||++||+.|+
T Consensus 171 ~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~ 250 (409)
T 4gni_A 171 AAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLI 250 (409)
T ss_dssp HHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHH
T ss_pred HHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHH
Confidence 9999999999999999999999999874 4578999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccC--CCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHH
Q 005099 307 DWLASNFKRDEG--IDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDR 384 (714)
Q Consensus 307 ~~l~~~~~~~~~--~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~ 384 (714)
+++..+|..+++ .+...+++.+.+|+.+||++|+.||......+.++.+.++ .++.++|||++|+++++|++++
T Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~ 326 (409)
T 4gni_A 251 DHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDG----LDFASTINRLRYETIARTVFEG 326 (409)
T ss_dssp HHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCC----cceEEEeeHHHHHHHHHHHHHH
Confidence 999999998888 7888899999999999999999999999999999877665 7789999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCC--------CcCCCChhHHHhHHHHHHhHhhC
Q 005099 385 LKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREP--------NVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 385 i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~--------~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
+.++|+++|+++++...+|+.|+||||+|++|+|++.|++.|+.++ ....||+++||+|||++|+....
T Consensus 327 i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~ 403 (409)
T 4gni_A 327 FNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQE 403 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhh
Confidence 9999999999999998999999999999999999999999998753 57899999999999999997654
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=374.55 Aligned_cols=314 Identities=26% Similarity=0.347 Sum_probs=242.9
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC-CCE-EecHHHHHhhhhCCCchHHHHhHhhCCCchh
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN-GDR-LVGQIAKRQAVVNPENTFFSVKRFIGRKMVE 153 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~~-~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~ 153 (714)
+.+||||||||||++++..++ .++ .+||+|+|.++ +++ ++|+.|+.+...+|.++..
T Consensus 3 ~~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~------------ 61 (344)
T 1jce_A 3 RKDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKA------------ 61 (344)
T ss_dssp -CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEE------------
T ss_pred CceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEE------------
Confidence 468999999999999875433 233 28999999876 554 7999998877777766421
Q ss_pred hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHH
Q 005099 154 VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGR 233 (714)
Q Consensus 154 v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~ 233 (714)
.+|++ +|.+ .....++++++++|++++.. .+++ ...+|||||++|++.||+++++|++
T Consensus 62 ------~~p~~-----~g~i-------~~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~a~~ 119 (344)
T 1jce_A 62 ------IRPMR-----DGVI-------ADYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILDAGL 119 (344)
T ss_dssp ------ECCEE-----TTEE-------SSHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ------EecCC-----CCee-------CChHHHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 01221 1211 11123566666666665542 1233 3789999999999999999999999
Q ss_pred HcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhcc
Q 005099 234 IAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 313 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~ 313 (714)
.||++++.+++||+|||++|+.+...+.++||||+||||||+++++..... ..++..+||++||+.|.+++.+++
T Consensus 120 ~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~ 194 (344)
T 1jce_A 120 EAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIV-----TWESIRIAGDEMDEAIVQYVRETY 194 (344)
T ss_dssp HTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEE-----EEEEESCSHHHHHHHHHHHHHHHH
T ss_pred HcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEE-----eeCCCCccChhHHHHHHHHHHHHh
Confidence 999999999999999999999877667899999999999999999876432 245679999999999999998876
Q ss_pred ccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce------eeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHH
Q 005099 314 KRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ------TNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKT 387 (714)
Q Consensus 314 ~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~------~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~ 387 (714)
+.... ...||++|+.|+.... ..+.++.. +..+..+..++|+|++|+++++|+++++.+
T Consensus 195 ~~~~~-------------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~i~~~~~~~~~~~~~~~i~~ 259 (344)
T 1jce_A 195 RVAIG-------------ERTAERVKIEIGNVFPSKENDELETTVSGI--DLSTGLPRKLTLKGGEVREALRSVVVAIVE 259 (344)
T ss_dssp CEECC-------------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEE--ETTTTEEEEEEEEHHHHHHHTHHHHHHHHH
T ss_pred CcccC-------------HHHHHHHHHHHhccCccccCCcceEEEecc--ccCCCCceeEEEeHHHHHHHHHHHHHHHHH
Confidence 43221 4689999999997643 23444321 111114578999999999999999999999
Q ss_pred HHHHHHHHcCCC--CCCC-CEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhh
Q 005099 388 PVETSLRDAKLS--FKDL-DEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLA 452 (714)
Q Consensus 388 ~i~~~L~~a~~~--~~~i-~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls 452 (714)
.|+++|++++.. .+.+ +.|+|+||+|++|+|++.|++.|+.++....||+++||+||++++..++
T Consensus 260 ~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 260 SVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHhChH
Confidence 999999987532 1224 6899999999999999999999998888889999999999999998654
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-42 Score=342.79 Aligned_cols=216 Identities=52% Similarity=0.780 Sum_probs=209.4
Q ss_pred cEEEeeccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCC
Q 005099 458 IVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRG 537 (714)
Q Consensus 458 ~~~~dv~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g 537 (714)
+++.|++|+||||++.+|.|.+|||||++||++++++|++..|+|+.+.|.|||||+.++.+|..||+|.|.++||+|+|
T Consensus 1 ~~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G 80 (219)
T 4e81_A 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (219)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTT
T ss_pred CeEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEecCCceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHH
Q 005099 538 VPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEK 617 (714)
Q Consensus 538 ~~~i~v~f~id~~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~ 617 (714)
.++|+|+|++|.||+|+|++.++.||++.+++|.+..+||++||++|++++++++.+|++.+++.++||+||+|+|.+++
T Consensus 81 ~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~ 160 (219)
T 4e81_A 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRK 160 (219)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTCSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEeCCCCCEeeeeeccccCccceEeeeccccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005099 618 QLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYN 673 (714)
Q Consensus 618 ~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 673 (714)
.|+++.++++++++++|.+.|+++++||++++.++|++++++|++.+.+|..+.|+
T Consensus 161 ~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~~~~~i~~~~~~L~~~~~~i~~~~~~ 216 (219)
T 4e81_A 161 QVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQ 216 (219)
T ss_dssp HHHHHGGGSCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHHhhhhCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988889999999999999999999999999999999999999999999999887
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=322.11 Aligned_cols=214 Identities=34% Similarity=0.588 Sum_probs=207.9
Q ss_pred EeeccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCe
Q 005099 461 LDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ 540 (714)
Q Consensus 461 ~dv~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~ 540 (714)
.|++|++|||++.+|.|.+|||||++||++++++|++..|+|+.+.|+||||++.++.+|..||+|.|.++||+|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005099 541 IEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLK 620 (714)
Q Consensus 541 i~v~f~id~~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~ 620 (714)
|+|+|++|.||+|+|++.++.+|++.+++|.....||+++|++|++++++++.+|++.+++.+++|+||+|+|++|+.|+
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~ 160 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALA 160 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEeccCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998878999999999999999999999999999999999999999999999
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005099 621 ELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 674 (714)
Q Consensus 621 ~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~i~~~~~~~ 674 (714)
++.+++++++++++.+.|+++++||+++|.++|++++++|++.+.+|..|+|+.
T Consensus 161 ~~~~~~~~~~k~~i~~~l~~~~~wl~~~d~~~~~~~~~~L~~~~~~i~~r~~~~ 214 (227)
T 1u00_A 161 ADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQ 214 (227)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999998899999999999999999999998864
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=274.77 Aligned_cols=165 Identities=59% Similarity=0.916 Sum_probs=154.3
Q ss_pred CCCcEEEeeccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCC
Q 005099 455 VSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPA 534 (714)
Q Consensus 455 ~~~~~~~dv~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~ 534 (714)
...+.+.|++|+||||++.+|.|.+|||||++||++++++|++..|+|+.+.|.|||||+.++.+|..||+|.|.++||+
T Consensus 17 ~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~ 96 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPA 96 (182)
T ss_dssp -------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCC
T ss_pred CCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEEecCCceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Q 005099 535 PRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQ 614 (714)
Q Consensus 535 ~~g~~~i~v~f~id~~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~ 614 (714)
|+|.++|+|+|++|.||+|+|++.++.||++.+++|.....||++||++|++++++++++|++.+++.++||+||+|+|+
T Consensus 97 p~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~iy~ 176 (182)
T 3n8e_A 97 PRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHD 176 (182)
T ss_dssp CTTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecCccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 005099 615 TEKQL 619 (714)
Q Consensus 615 ~~~~l 619 (714)
+|++|
T Consensus 177 ~~~~l 181 (182)
T 3n8e_A 177 TETKM 181 (182)
T ss_dssp CSCCC
T ss_pred HHHhh
Confidence 87654
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=250.49 Aligned_cols=150 Identities=57% Similarity=0.906 Sum_probs=145.9
Q ss_pred EEeeccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCC
Q 005099 460 LLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 539 (714)
Q Consensus 460 ~~dv~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~ 539 (714)
+.|++|+|||+++.+|.|.+|||||++||++++++|++..|+|+.+.|.|||||+..+.+|..||+|.|.++||+|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCceEEEEEEEcCCCceeeeEEccC-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 005099 540 QIEVKFDIDANGILSVSAVDKGTGKKQDITITGA-STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQAD 609 (714)
Q Consensus 540 ~i~v~f~id~~gil~v~a~~~~t~~~~~i~i~~~-~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE 609 (714)
+|+|+|++|.||+|+|++.++.||++.+++|.+. +.||++||++|++++++|+.+|++.+++.++||+||
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCCC
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999988 789999999999999999999999999999999986
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=251.67 Aligned_cols=150 Identities=57% Similarity=0.905 Sum_probs=142.5
Q ss_pred EEeeccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCC
Q 005099 460 LLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 539 (714)
Q Consensus 460 ~~dv~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~ 539 (714)
+.|++|+|||+++.+|.|.+|||||++||++++++|++..|+|+.+.|.|||||+..+.+|..||+|.|.++||+|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCceEEEEEEEcCCCceeeeEEccC-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 005099 540 QIEVKFDIDANGILSVSAVDKGTGKKQDITITGA-STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQAD 609 (714)
Q Consensus 540 ~i~v~f~id~~gil~v~a~~~~t~~~~~i~i~~~-~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE 609 (714)
+|+|+|++|.||+|+|++.++.||++.+++|.++ +.||++||++|++++++|+++|++.+++.++||+||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSEEC
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999988 669999999999999999999999999999999886
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=251.76 Aligned_cols=150 Identities=62% Similarity=0.964 Sum_probs=144.9
Q ss_pred EEeeccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCC
Q 005099 460 LLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 539 (714)
Q Consensus 460 ~~dv~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~ 539 (714)
+.|++|+|||+++.+|.|.+|||||++||++++++|++..|+|+.+.|.|||||+.++.+|..||+|.|.++||+|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCceEEEEEEEcCCCceeeeEEccCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 005099 540 QIEVKFDIDANGILSVSAVDKGTGKKQDITITGASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQAD 609 (714)
Q Consensus 540 ~i~v~f~id~~gil~v~a~~~~t~~~~~i~i~~~~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE 609 (714)
+|+|+|++|.||+|+|++.|+.||++.+++|.+...||++||++|++++++|+++|++.+++.++||+||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBCCCC
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999988999999999999999999999999999999999886
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=235.58 Aligned_cols=150 Identities=55% Similarity=0.941 Sum_probs=145.0
Q ss_pred EEeeccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCC
Q 005099 460 LLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 539 (714)
Q Consensus 460 ~~dv~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~ 539 (714)
+.|++|++|||++.+|.|.+||+||++||++++++|++..|+|+.+.|.||||++.++.+|..||+|.|.++||.|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCceEEEEEEEcCCCceeeeEEccC-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 005099 540 QIEVKFDIDANGILSVSAVDKGTGKKQDITITGA-STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQAD 609 (714)
Q Consensus 540 ~i~v~f~id~~gil~v~a~~~~t~~~~~i~i~~~-~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE 609 (714)
+|+|+|++|.||+|+|++.++.+|++.+++|... +.||++||++|++++++|+.+|++.+++.++||+||
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSEEC
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999888 679999999999999999999999999999999886
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=268.53 Aligned_cols=229 Identities=17% Similarity=0.134 Sum_probs=172.7
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCcCeEE--EEecCCCCHHHHHHHHHHHHHc--------C------CCeeEEec
Q 005099 181 GKQFAAEEISAQVLRKLVDDASKFLNDSVTKAV--VTVPAYFNDSQRTATKDAGRIA--------G------LDVLRIIN 244 (714)
Q Consensus 181 ~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~V--ITVPa~f~~~qR~~l~~Aa~~A--------G------l~~~~li~ 244 (714)
+..+.+++...+++..|+..++...+.+ .++| |+||++|++.||+++++++..+ | ++.+++++
T Consensus 92 ~~~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~ 170 (346)
T 2fsj_A 92 DGRLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRP 170 (346)
T ss_dssp TTCTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEE
T ss_pred CCcccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEc
Confidence 3445567778888888877653333333 4699 9999999999999999997765 4 35588999
Q ss_pred hhHHHHHHcccc--cC-CCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCc
Q 005099 245 EPTAASLAYGFE--KK-NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDL 321 (714)
Q Consensus 245 Ep~AAAlay~~~--~~-~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~ 321 (714)
||+|||++|... .. ...+++|||+||||||++++++.++. .+.+++++..+||++|++.|.+++.++++... ++
T Consensus 171 Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~-~v~~~s~~~~lGg~~i~~~I~~~i~~~~g~~~--~i 247 (346)
T 2fsj_A 171 QGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDME-PVVELSFSLQIGVGDAISALSRKIAKETGFVV--PF 247 (346)
T ss_dssp TTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTE-ECGGGCEEESCCHHHHHHHHHHHHHHHHCCCC--CH
T ss_pred cHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCE-EEeecCCCcchhHHHHHHHHHHHHHHHhCCCc--CC
Confidence 999999998221 12 24789999999999999999988776 56666678899999999999999887764200 22
Q ss_pred hhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 005099 322 LKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKF-EELCSDLLDRLKTPVETSLRDAKLSF 400 (714)
Q Consensus 322 ~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~ef-e~l~~~l~~~i~~~i~~~L~~a~~~~ 400 (714)
. ...+| .. ..+.+. + . .++++++ +++++++++++.+.|++.|+++ .
T Consensus 248 ~---------~~~~e-------~~--~~~~~~----g----~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~ 294 (346)
T 2fsj_A 248 D---------LAQEA-------LS--HPVMFR----Q----K----QVGGPEVSGPILEDLANRIIENIRLNLRGE---V 294 (346)
T ss_dssp H---------HHHHH-------TT--SCEEET----T----E----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---G
T ss_pred C---------HHHHh-------cC--CeEeEC----C----c----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---h
Confidence 1 11222 00 112211 1 2 3558999 9999999999999999999876 4
Q ss_pred CCCCEEEEEcCCCCchhHHHHHHhhcCCCCCc---CCCChhHHHhHHHHHHh
Q 005099 401 KDLDEVILVGGSTRIPAVQELVKKMTGREPNV---TVNPDEVVALGAAVQAG 449 (714)
Q Consensus 401 ~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~---~~np~eaVA~GAa~~aa 449 (714)
++++.|+|+||++++ +++.|++.|+. ... ..||++|+|+|+..++.
T Consensus 295 ~~i~~IvL~GGga~l--l~~~l~~~~~~-~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 295 DRVTSLIPVGGGSNL--IGDRFEEIAPG-TLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp GGEEEEEEESTTHHH--HGGGGGGGSTT-CBCCCCTTTTTTHHHHHHHHHHH
T ss_pred hcccEEEEECCcHHH--HHHHHHHHCcC-cEEeccCCCcHHHHHHHHHHHHh
Confidence 568999999999999 99999999973 334 67999999999998764
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=269.18 Aligned_cols=317 Identities=18% Similarity=0.229 Sum_probs=211.4
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhh
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEV 154 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v 154 (714)
...++|||+||++++++++++|++.+. ..|...+||.+. +...+.+++.+...+|+++++. .+
T Consensus 12 ~~~~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps~~~-------------~~g~i~d~~~~~~~ik~~~~~~--~~ 74 (377)
T 2ych_A 12 RVEALGLEIGASALKLVEVSGNPPALK--ALASRPTPPGLL-------------MEGMVAEPAALAQEIKELLLEA--RT 74 (377)
T ss_dssp CCCCEEEEECSSEEEEEEEETTTTEEE--EEEEEECCTTSE-------------ETTEESCHHHHHHHHHHHHHHH--TC
T ss_pred CCceEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCCCcc-------------cCCCcCCHHHHHHHHHHHHHHc--CC
Confidence 456899999999999999887766552 234445555321 2234567888899999999761 00
Q ss_pred hhhhccceeEEEEcCCCcEEE-EeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHH---------
Q 005099 155 DEESKQVSYRVVRDENGNVKL-ECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQ--------- 224 (714)
Q Consensus 155 ~~~~~~~~~~v~~~~~g~~~v-~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~q--------- 224 (714)
..+.+ .+.-+...+.. .+. ...++++++... ++..++++++.++.++||++|. .+.+
T Consensus 75 --~~~~v---~~~i~~~~~~~~~~~--~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~~--~~~~~~~~~~~~~ 141 (377)
T 2ych_A 75 --RKRYV---VTALSNLAVILRPIQ--VPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFAP--LTPLSEVQEGEQV 141 (377)
T ss_dssp --CCCEE---EEEECGGGCEEEEEE--EECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEEE--SSCGGGSCTTSEE
T ss_pred --CcceE---EEEecCCcEEEEEEE--CCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEEE--eCCCCCCCCccee
Confidence 01111 11112222211 111 135778887653 3557888999999999999983 3333
Q ss_pred -----------HHHHHHHHHHcCCCeeEEechhHHHHHHccccc--CCCceEEEEEeCCcceEEEEEEEcCceEEEEEec
Q 005099 225 -----------RTATKDAGRIAGLDVLRIINEPTAASLAYGFEK--KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTS 291 (714)
Q Consensus 225 -----------R~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~--~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~ 291 (714)
.+.+++|++.|||++..+++||+|||++|+... ..+..++|+|+||||||+++++.+... ..
T Consensus 142 ~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~-----~~ 216 (377)
T 2ych_A 142 QVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPL-----AV 216 (377)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEE-----EE
T ss_pred EEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEE-----EE
Confidence 388999999999999999999999999986542 235779999999999999999743222 24
Q ss_pred CCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCceeEEEecH
Q 005099 292 GDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTR 371 (714)
Q Consensus 292 gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr 371 (714)
++..+||++||+.|.+.+ +.+ ..+||++|+.++..............- ......++|
T Consensus 217 ~~~~~GG~~i~~~i~~~~--------~~~-----------~~~aE~~K~~~~~~~~~~~~~~~~i~~----~~~~~~i~~ 273 (377)
T 2ych_A 217 RVLTLSGKDFTEAIARSF--------NLD-----------LLAAEEVKRTYGMATLPTEDEELLLDF----DAERERYSP 273 (377)
T ss_dssp EEESCSHHHHHHHHHHHT--------TCC-----------HHHHHHHHHHTC----------------------------
T ss_pred EeeechHHHHHHHHHHHh--------CCC-----------HHHHHHHHhhccccccccccccccccc----ccccccCCH
Confidence 567999999999998732 222 468999999988643221110000000 113457899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcC----------------
Q 005099 372 VKFEELCSDLLDRLKTPVETSLRDA--KLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVT---------------- 433 (714)
Q Consensus 372 ~efe~l~~~l~~~i~~~i~~~L~~a--~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~---------------- 433 (714)
++|++++++.++++...|++.|+.. +.....++.|+|+||+|++|.|++.|++.|+.++...
T Consensus 274 ~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~P~~~v~~~~~~~~~~ 353 (377)
T 2ych_A 274 GRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVNPWEAVAVDPKRFESE 353 (377)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECCGGGGSBCCTTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecCchhhcccCcccCCHH
Confidence 9999999999999999999999963 5666789999999999999999999999998654332
Q ss_pred ----CCChhHHHhHHHHHHh
Q 005099 434 ----VNPDEVVALGAAVQAG 449 (714)
Q Consensus 434 ----~np~eaVA~GAa~~aa 449 (714)
.+|..++|+|+|+++.
T Consensus 354 ~l~~~~p~~a~a~Glal~~~ 373 (377)
T 2ych_A 354 QLQEIGPEFAVALGLALRGV 373 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhHHHHHHHHHHHcCC
Confidence 1345667888888764
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=238.86 Aligned_cols=203 Identities=23% Similarity=0.359 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEE
Q 005099 187 EEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVF 266 (714)
Q Consensus 187 eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVv 266 (714)
.+....+|+++++.++.+.+..+..+++|+|++|+..+|+.++++++.+|+++..++.||+|++++|+.. ..+|+
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~-----~~~vi 144 (272)
T 3h1q_A 70 YIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN-----DGIVV 144 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS-----SEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC-----CEEEE
Confidence 4566788999999998888888899999999999999999999999999999999999999999999864 35999
Q ss_pred EeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCc
Q 005099 267 DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLT 346 (714)
Q Consensus 267 D~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~ 346 (714)
|+||||++++++.. +.+. ......+||.+||+.|.+++.-. ...||++|+.++
T Consensus 145 DiGggst~~~~~~~--g~~~---~~~~~~~Gg~~~~~~l~~~l~~~-------------------~~~ae~~k~~~~--- 197 (272)
T 3h1q_A 145 DIGGGTTGIAVIEK--GKIT---ATFDEPTGGTHLSLVLAGSYKIP-------------------FEEAETIKKDFS--- 197 (272)
T ss_dssp EECSSCEEEEEEET--TEEE---EECCBSCCHHHHHHHHHHHHTCC-------------------HHHHHHHHHSST---
T ss_pred EECCCcEEEEEEEC--CEEE---EEecCCCcHHHHHHHHHHHhCCC-------------------HHHHHHHHHhcC---
Confidence 99999999999873 3321 24668999999999999887411 457899998865
Q ss_pred eeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc
Q 005099 347 QTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 347 ~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f 426 (714)
+++++++++.++++++.+.+.+.++..+ +++.|+|+||++++|.+++.|++.|
T Consensus 198 -----------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l 250 (272)
T 3h1q_A 198 -----------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFL 250 (272)
T ss_dssp -----------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHH
T ss_pred -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHh
Confidence 4789999999999999999999998753 4789999999999999999999999
Q ss_pred CCCCCcCCCChhHHHhHHHHHH
Q 005099 427 GREPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 427 g~~~~~~~np~eaVA~GAa~~a 448 (714)
+.++..+.||++++|+|||++|
T Consensus 251 ~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 251 GKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp SSCCBCCSSGGGHHHHHHHTTC
T ss_pred CCCccccCChHHHHHHHHHhcC
Confidence 9999999999999999999864
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=252.23 Aligned_cols=298 Identities=15% Similarity=0.166 Sum_probs=198.0
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC---------CCEEecHHHHHhhhhCCCchHHHHhHhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN---------GDRLVGQIAKRQAVVNPENTFFSVKRFI 147 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~~i~~~Krll 147 (714)
..|+||+||+++++++..++.|.++ +||+|+.... ...++|+.|... +.. ..+
T Consensus 6 ~~ivID~Gs~~~k~G~~~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~----~~~--~~~---- 67 (375)
T 2fxu_A 6 TALVCDNGSGLVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK----RGI--LTL---- 67 (375)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEE--------EECCEEEECTTTC-------CCEEHHHHHHH----TTS--EEE----
T ss_pred ceEEEECCCCeEEEEECCCCCCcee--------eccccccccccccccCCCCCCeEechhHhhc----Ccc--cce----
Confidence 5799999999999999876666543 4666665432 246788887543 100 000
Q ss_pred CCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCC--cCeEEEEecCCCCHHHH
Q 005099 148 GRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDS--VTKAVVTVPAYFNDSQR 225 (714)
Q Consensus 148 G~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~--v~~~VITVPa~f~~~qR 225 (714)
.+|+. +| .+.--+....+++++.. +.++.. ...++||+|++++..+|
T Consensus 68 ------------~~Pi~-----~G-----------~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r 116 (375)
T 2fxu_A 68 ------------KYPIE-----HG-----------IITNWDDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANR 116 (375)
T ss_dssp ------------ECSEE-----TT-----------EECCHHHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHH
T ss_pred ------------ecccc-----CC-----------cccCHHHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHH
Confidence 01111 11 11112334444555442 233332 24699999999999999
Q ss_pred HHHHHH-HHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHH
Q 005099 226 TATKDA-GRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 304 (714)
Q Consensus 226 ~~l~~A-a~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~ 304 (714)
+++.++ .+.+|++.+.+++||+|||++|+. .+.||+|+|+||||++.+. +|. .+........+||++||+.
T Consensus 117 ~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~-----~~~lVvDiG~gtt~v~~v~--~G~-~~~~~~~~~~~GG~~lt~~ 188 (375)
T 2fxu_A 117 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVTHNVPIY--EGY-ALPHAIMRLDLAGRDLTDY 188 (375)
T ss_dssp HHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC-----SSEEEEEECSSCEEEEEEE--TTE-ECGGGCEEESCCHHHHHHH
T ss_pred HHHHHHHHHhcCcceEEEccchheeeeecCC-----CeEEEEEcCCCceEEeEeE--CCE-EeccceEEeccCHHHHHHH
Confidence 988876 588899999999999999999986 3689999999999987764 443 2333345579999999999
Q ss_pred HHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCC----------------ceeeeeccccccCCCCCceeEEE
Q 005099 305 IVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSL----------------TQTNISLPFITATADGPKHIDTT 368 (714)
Q Consensus 305 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~----------------~~~~i~i~~~~~~~~g~~~~~~~ 368 (714)
|.++|..+. +......+ ...+|++|+.++.. ....+.+| ....++
T Consensus 189 l~~~l~~~~---~~~~~~~~-------~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lp---------dg~~i~ 249 (375)
T 2fxu_A 189 LMKILTERG---YSFVTTAE-------REIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP---------DGQVIT 249 (375)
T ss_dssp HHHHHHHHT---CCCCSHHH-------HHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT---------TSCEEE
T ss_pred HHHHHHhcC---CCCCcHHH-------HHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECC---------CCCEEE
Confidence 999998752 11111111 23455556555422 22233333 113578
Q ss_pred ecHHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--CCCCCCCEEEEEcCCCCchhHHHHHHhhcC--------CCC
Q 005099 369 LTRVKF---EELCSDL-----LDRLKTPVETSLRDAK--LSFKDLDEVILVGGSTRIPAVQELVKKMTG--------REP 430 (714)
Q Consensus 369 itr~ef---e~l~~~l-----~~~i~~~i~~~L~~a~--~~~~~i~~VvLvGGssrip~v~~~l~~~fg--------~~~ 430 (714)
|+++.| |.+++|. ...+.+.|.++|..+. +....++.|+|+||+|++|.+++.|++.++ .++
T Consensus 250 i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v 329 (375)
T 2fxu_A 250 IGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKI 329 (375)
T ss_dssp ESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCE
T ss_pred EChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEE
Confidence 888888 4445553 2457788888888652 223345789999999999999999998874 223
Q ss_pred CcCCCChhHHHhHHHHHHhH
Q 005099 431 NVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 431 ~~~~np~eaVA~GAa~~aa~ 450 (714)
....+|..++++||+++|..
T Consensus 330 ~~~~~p~~~~w~G~si~a~l 349 (375)
T 2fxu_A 330 IAPPERKYSVWIGGSILASL 349 (375)
T ss_dssp ECCTTTTSHHHHHHHHHHHC
T ss_pred EcCCCCCccEEcchHHhhCc
Confidence 35679999999999999873
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=254.76 Aligned_cols=308 Identities=18% Similarity=0.183 Sum_probs=205.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC-----------------CEEecHHHHHhhhhCCC
Q 005099 75 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG-----------------DRLVGQIAKRQAVVNPE 137 (714)
Q Consensus 75 ~~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~-----------------~~~vG~~A~~~~~~~p~ 137 (714)
...+|+||+||+++++++..++.|.++ +||+|+..... ..++|+.|... |.
T Consensus 4 ~~~~ivID~Gs~~~k~G~~~~~~p~~~--------~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~----~~ 71 (418)
T 1k8k_A 4 RLPACVVDCGTGYTKLGYAGNTEPQFI--------IPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK----PT 71 (418)
T ss_dssp CSCCEEEEECSSEEEEEETTCSSCSEE--------EESCEEECC-----------CCCTTGGGCEEEGGGGTSC----TT
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCCc--------CCceEEEECcccccccccccccccccccCeEEChHHHhc----CC
Confidence 346899999999999998766666543 68888765431 24455544321 00
Q ss_pred chHHHHhHhhCCCchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCC--CcCeEEEE
Q 005099 138 NTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLND--SVTKAVVT 215 (714)
Q Consensus 138 ~~i~~~KrllG~~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~--~v~~~VIT 215 (714)
..+..+-+...+.--+....+++++.. +.++. ....+|||
T Consensus 72 -----------------------------------~~~~~pi~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit 113 (418)
T 1k8k_A 72 -----------------------------------YATKWPIRHGIVEDWDLMERFMEQVIF---KYLRAEPEDHYFLLT 113 (418)
T ss_dssp -----------------------------------SEEECCEETTEESCHHHHHHHHHHHHH---TTTCCCGGGCCEEEE
T ss_pred -----------------------------------CEEeccccCCEECCHHHHHHHHHHHHH---hccCCCCCCCcEEEE
Confidence 001111001111122333444554442 23332 23579999
Q ss_pred ecCCCCHHHHHHHHHHH-HHcCCCeeEEechhHHHHHH-cc---cccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEe
Q 005099 216 VPAYFNDSQRTATKDAG-RIAGLDVLRIINEPTAASLA-YG---FEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLST 290 (714)
Q Consensus 216 VPa~f~~~qR~~l~~Aa-~~AGl~~~~li~Ep~AAAla-y~---~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~ 290 (714)
+|++|+..+|+++.+++ +.+|++.+.+++||+||+++ |. .... +.+.||||+|+||||++++. ++. .+...
T Consensus 114 ~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~-~~~glVvDiG~gtt~v~~v~--~G~-~~~~~ 189 (418)
T 1k8k_A 114 EPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGER-TLTGTVIDSGDGVTHVIPVA--EGY-VIGSC 189 (418)
T ss_dssp ECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSC-CCCEEEEEESSSCEEEEEEE--TTE-ECGGG
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCC-CCeEEEEEcCCCceEEEEeE--CCE-Ecccc
Confidence 99999999999999999 88999999999999999988 42 2112 23779999999999999986 332 23333
Q ss_pred cCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce-----------------eeeecc
Q 005099 291 SGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ-----------------TNISLP 353 (714)
Q Consensus 291 ~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~-----------------~~i~i~ 353 (714)
.++..+||++||+.|.++|.+++. ......+ ...+|++|+.++.... ..+.+|
T Consensus 190 ~~~~~lGG~~lt~~l~~~l~~~~~---~~~~~~~-------~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lp 259 (418)
T 1k8k_A 190 IKHIPIAGRDITYFIQQLLRDREV---GIPPEQS-------LETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGI 259 (418)
T ss_dssp CEEESCSHHHHHHHHHHHHHTTCC---CCCGGGH-------HHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEE
T ss_pred eEEEeCcHHHHHHHHHHHHHhcCC---CCCCHHH-------HHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECC
Confidence 356799999999999999987653 1211111 3567888888764321 123333
Q ss_pred ccccCCCCCceeEEEecHHHH---HHHHHHHH------HHHHHHHHHHHHHcC--CCCCCCCEEEEEcCCCCchhHHHHH
Q 005099 354 FITATADGPKHIDTTLTRVKF---EELCSDLL------DRLKTPVETSLRDAK--LSFKDLDEVILVGGSTRIPAVQELV 422 (714)
Q Consensus 354 ~~~~~~~g~~~~~~~itr~ef---e~l~~~l~------~~i~~~i~~~L~~a~--~~~~~i~~VvLvGGssrip~v~~~l 422 (714)
... ......++|++++| |.+++|.+ ..+.+.|.++|..+. +....++.|+|+||+|++|.+++.|
T Consensus 260 d~~----~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl 335 (418)
T 1k8k_A 260 NAI----SKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRL 335 (418)
T ss_dssp CTT----TCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHH
T ss_pred CCC----CCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHH
Confidence 221 12456789999999 55655542 468888999998764 3344567899999999999999999
Q ss_pred HhhcCCC------------------------CCcCCCChhHHHhHHHHHHhH
Q 005099 423 KKMTGRE------------------------PNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 423 ~~~fg~~------------------------~~~~~np~eaVA~GAa~~aa~ 450 (714)
++.++.. +..+.+|..++.+||+++|..
T Consensus 336 ~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 387 (418)
T 1k8k_A 336 QRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 387 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcC
Confidence 8766321 122346789999999999874
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=246.43 Aligned_cols=198 Identities=14% Similarity=0.131 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHH
Q 005099 223 SQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 302 (714)
Q Consensus 223 ~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D 302 (714)
...+.+.+|++.|||++..++.||+|||++|+.+...+..++|||+||||||+++++ ++.+.. .++..+||++||
T Consensus 168 ~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~--~g~~~~---~~~i~~GG~~it 242 (419)
T 4a2a_A 168 KVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYK--NGVPIK---ISYVPVGMKHVI 242 (419)
T ss_dssp HHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEE--TTEEEE---EEEESCCHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEE--CCEEEE---EEecccHHHHHH
Confidence 356789999999999999999999999999987655567899999999999999987 444322 345799999999
Q ss_pred HHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCC-----ceeeeeccccccCCCCCceeEEEecHHHHHHH
Q 005099 303 KRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSL-----TQTNISLPFITATADGPKHIDTTLTRVKFEEL 377 (714)
Q Consensus 303 ~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~-----~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l 377 (714)
+.|...+.-. ..+||++|+.++.. ....+.++... .....+++|++|+++
T Consensus 243 ~dIa~~l~~~-------------------~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~------~~~~~~is~~~l~~i 297 (419)
T 4a2a_A 243 KDVSAVLDTS-------------------FEESERLIITHGNAVYNDLKEEEIQYRGLD------GNTIKTTTAKKLSVI 297 (419)
T ss_dssp HHHHHHHTCC-------------------HHHHHHHHHHHCCSCCTTCCCCEEEEECTT------SCSEEEEEHHHHHHH
T ss_pred HHHHHHHCCC-------------------HHHHHHHHHHhccCcccCCCCceEEEeecC------CccceEEcHHHHHHH
Confidence 9998865322 56899999998753 23445555432 235679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCC------CCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcC-----------------C
Q 005099 378 CSDLLDRLKTPVETSLRDAKL------SFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVT-----------------V 434 (714)
Q Consensus 378 ~~~l~~~i~~~i~~~L~~a~~------~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~-----------------~ 434 (714)
++|.++++.+.|++.|+.++. ....++.|+|+||+|++|.|++++++.|+.++... .
T Consensus 298 i~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~~~~~~p~~~~~~~~~~~ 377 (419)
T 4a2a_A 298 IHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVAN 377 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECCGGGSSSCCCBTCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEecCCCCchhccCcccccC
Confidence 999999999999999999987 34568999999999999999999999998754321 3
Q ss_pred CChhHHHhHHHHHHhH
Q 005099 435 NPDEVVALGAAVQAGV 450 (714)
Q Consensus 435 np~eaVA~GAa~~aa~ 450 (714)
+|..+.|.|.++++..
T Consensus 378 ~P~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 378 DPSFAAAFGNVFAVSE 393 (419)
T ss_dssp CGGGHHHHHTTCC---
T ss_pred CchHHHHHHHHHHHhh
Confidence 8999999999998765
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-24 Score=225.74 Aligned_cols=227 Identities=19% Similarity=0.218 Sum_probs=154.3
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCC-CCHH--HH--HHHHHH------------HHHcCCCeeEEe
Q 005099 181 GKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAY-FNDS--QR--TATKDA------------GRIAGLDVLRII 243 (714)
Q Consensus 181 ~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~-f~~~--qR--~~l~~A------------a~~AGl~~~~li 243 (714)
+..++++.+++.+ ..|++ +.. .+.++ .+|+++|.. |... || +++.+- ++.+++..+.++
T Consensus 71 ~~~~~~~~l~~i~-~aL~~-~~~-~~~~~-~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~ 146 (320)
T 2zgy_A 71 AWQYSDVNVVAVH-HALLT-SGL-PVSEV-DIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVM 146 (320)
T ss_dssp GGGGSHHHHHHHH-HHHHH-HSC-CSCEE-EEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEE
T ss_pred CccchHHHHHHHH-HHHHH-cCC-CCceE-EEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEe
Confidence 4567888777654 55543 221 23333 699999987 6541 22 222221 234456778999
Q ss_pred chhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchh
Q 005099 244 NEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLK 323 (714)
Q Consensus 244 ~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~ 323 (714)
+||.||+++|+.....+..++|+|+||||+|+++++ ++.+.+.+.+++.++||.+||+.|.+++.++ +.++.
T Consensus 147 ~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~--~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-----~~~i~- 218 (320)
T 2zgy_A 147 PESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLA-----RTKGS- 218 (320)
T ss_dssp ESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCC-----SBGGG-
T ss_pred cCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEe--CCeeEEeeecCCccccHHHHHHHHHHHHHHc-----CCCCC-
Confidence 999999999975544578999999999999999998 4455566667778999999999999998753 22322
Q ss_pred cHHHHHHHHHHHHHh-hhhcCC-CceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 005099 324 DKQALQRLTETAEKA-KMELSS-LTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFK 401 (714)
Q Consensus 324 ~~~~~~rL~~~~e~a-K~~Ls~-~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~ 401 (714)
...+|++ |..-.. .....+.+ .-+.+++.+++++.++++.+.|.+.+++. .
T Consensus 219 --------~~~ae~~lk~~~~~~~~~~~i~~---------------~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~ 271 (320)
T 2zgy_A 219 --------SYLADDIIIHRKDNNYLKQRIND---------------ENKISIVTEAMNEALRKLEQRVLNTLNEF----S 271 (320)
T ss_dssp --------HHHHHHHHHTTTCHHHHHHHSSS---------------SCTHHHHHHHHHHHHHHHHHHHHHHHTTC----C
T ss_pred --------HHHHHHHHHHhhhhhcccceecC---------------chhhHHHHHHHHHHHHHHHHHHHHHHHhh----c
Confidence 1234444 332000 00000000 01345666667777777776666666652 5
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcCC---CCCcCCCChhHHHhHHHHHH
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTGR---EPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg~---~~~~~~np~eaVA~GAa~~a 448 (714)
+++.|+|+||+|++ +++.|++.|+. ++....||++|+|+||++++
T Consensus 272 ~~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 272 GYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp CCCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred CCCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 78999999999998 99999999987 57778999999999999875
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=193.76 Aligned_cols=121 Identities=64% Similarity=0.962 Sum_probs=110.6
Q ss_pred CCCcEEEeeccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCC
Q 005099 455 VSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPA 534 (714)
Q Consensus 455 ~~~~~~~dv~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~ 534 (714)
++++.+.|++|++||+++.+|.|.+||+||++||++++++|++..|+|+.+.|.|||||+.++.+|..||+|.|.++||+
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~ 93 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 93 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSC
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEEecCCceEEEEEEEcCCCceeeeEEccCCC
Q 005099 535 PRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGAST 575 (714)
Q Consensus 535 ~~g~~~i~v~f~id~~gil~v~a~~~~t~~~~~i~i~~~~~ 575 (714)
|+|.++|+|+|++|.||+|+|++.|+.||++.+++|..+..
T Consensus 94 p~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~ 134 (135)
T 1q5l_A 94 PRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 134 (135)
T ss_dssp CSSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSCC
T ss_pred CCceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecCCC
Confidence 99999999999999999999999999999999999987644
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-21 Score=215.26 Aligned_cols=214 Identities=18% Similarity=0.198 Sum_probs=91.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHH-HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEE
Q 005099 210 TKAVVTVPAYFNDSQRTATKDAG-RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVL 288 (714)
Q Consensus 210 ~~~VITVPa~f~~~qR~~l~~Aa-~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl 288 (714)
..++||+|++++..+|+++.+++ +.+|++.+.+++||.||+++++. .+.+|+|+|+|||+++.+. +|.. +.
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~-----~~~lVVDiG~g~T~v~pv~--~G~~-~~ 176 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL-----LTGVVVDSGDGVTHICPVY--EGFS-LP 176 (394)
T ss_dssp ------------------------------------------------------CCEEEECSSCEEEECEE--TTEE-CS
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC-----ceEEEEEcCCCceEeeeeE--CCEE-cc
Confidence 36999999999999999988864 77899999999999999999886 3569999999999998775 3332 12
Q ss_pred EecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce----------------eeeec
Q 005099 289 STSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ----------------TNISL 352 (714)
Q Consensus 289 ~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~----------------~~i~i 352 (714)
.......+||+++|+.|.++|..+. +......+ ...+|++|+.++.... ..+.+
T Consensus 177 ~~~~~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~-------~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~l 246 (394)
T 1k8k_B 177 HLTRRLDIAGRDITRYLIKLLLLRG---YAFNHSAD-------FETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTL 246 (394)
T ss_dssp TTCEEESCCHHHHHHHHHHHHHHTT---CCCCTTTT-------HHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEEC
T ss_pred cceEEeeccHHHHHHHHHHHHHhcC---CCCCcHHH-------HHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEEC
Confidence 1223468999999999999998752 11110111 3456777776654321 11222
Q ss_pred cccccCCCCCceeEEEecHHHHH---HHHHHH-----HHHHHHHHHHHHHHcCCC--CCCCCEEEEEcCCCCchhHHHHH
Q 005099 353 PFITATADGPKHIDTTLTRVKFE---ELCSDL-----LDRLKTPVETSLRDAKLS--FKDLDEVILVGGSTRIPAVQELV 422 (714)
Q Consensus 353 ~~~~~~~~g~~~~~~~itr~efe---~l~~~l-----~~~i~~~i~~~L~~a~~~--~~~i~~VvLvGGssrip~v~~~l 422 (714)
| ....++|+++.|+ -+++|- ...+.+.|.+.|..+..+ ..-.+.|+|+||+|++|.+.+.|
T Consensus 247 p---------dg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl 317 (394)
T 1k8k_B 247 P---------DGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRL 317 (394)
T ss_dssp T---------TSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHH
T ss_pred C---------CCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHH
Confidence 2 1135778888773 233332 234778888888876422 22346899999999999999999
Q ss_pred HhhcCC-----------------CCC--cCCCChhHHHhHHHHHHhH
Q 005099 423 KKMTGR-----------------EPN--VTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 423 ~~~fg~-----------------~~~--~~~np~eaVA~GAa~~aa~ 450 (714)
++.++. ++. .+.+|..++.+|++++|..
T Consensus 318 ~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 364 (394)
T 1k8k_B 318 ERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADI 364 (394)
T ss_dssp HHHHHHHHHHHTCSSCCCTTCCCCC----------------------
T ss_pred HHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCC
Confidence 887742 222 2456789999999998864
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-20 Score=190.44 Aligned_cols=217 Identities=20% Similarity=0.213 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcCeE-EEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEE
Q 005099 188 EISAQVLRKLVDDASKFLNDSVTKA-VVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVF 266 (714)
Q Consensus 188 ev~a~~L~~l~~~a~~~~~~~v~~~-VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVv 266 (714)
++.+.+|+.+++.+.... .++ .+++..+ ...++...+..|+||+|+++++..... ....|+
T Consensus 37 e~a~~vl~~~~~~a~~~~----~~~~~~a~t~~------------~~~a~~~~~~~Vne~~aha~a~~~~~~--~~~~vl 98 (276)
T 4ehu_A 37 TGPSRVLEKLYGKTGLAR----EDIKKVVVTGY------------GRMNYSDADKQISELSCHARGVNFIIP--ETRTII 98 (276)
T ss_dssp SHHHHHHHHHHHHHCCCG----GGEEEEEEEST------------TGGGCCSCSEECCHHHHHHHHHHHHST--TCCEEE
T ss_pred HHHHHHHHHHHHHCCCcc----hhccccccCch------------HHHHhhCCCcccchHHHHHHHHHHhCC--CCCeEE
Confidence 456667777777664322 222 2222222 124677788999999999988866543 345789
Q ss_pred EeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhh--hcCC
Q 005099 267 DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKM--ELSS 344 (714)
Q Consensus 267 D~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~--~Ls~ 344 (714)
|+|||+++++++. .++.+++....++...|+.+|+..+.++|...|.... ..+.+++. .+++
T Consensus 99 ~lgG~~~~~~~~~-~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~~~~---------------~~~~~a~~~~~i~~ 162 (276)
T 4ehu_A 99 DIGGQDAKVLKLD-NNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSELG---------------SISMNSQNEVSISS 162 (276)
T ss_dssp EECSSCEEEEEEC-TTSCEEEEEEECSCSTTSHHHHHHHHHHHTCCGGGHH---------------HHHTTCSSCCCCCC
T ss_pred EEcCCCceEEEEE-ecCceEEEEeCCCcCcchhhHHHHHHHHhccChhhhH---------------HHHhcCCCCCCcCC
Confidence 9999999999885 5678888888888999999999999999876554211 00111111 1111
Q ss_pred CceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHh
Q 005099 345 LTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKK 424 (714)
Q Consensus 345 ~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~ 424 (714)
....-..-+... ..-.....++++..+.+.+.+.+....... ..++.|+|+||.+++|.|++.|++
T Consensus 163 ~~~~f~~s~~~~----------~~~~~~~~~di~a~~~~~v~~~l~~~~~~~----~~~~~vvl~GGva~n~~lr~~l~~ 228 (276)
T 4ehu_A 163 TCTVFAESEVIS----------HLSENAKIEDIVAGIHTSVAKRVSSLVKRI----GVQRNVVMVGGVARNSGIVRAMAR 228 (276)
T ss_dssp CSHHHHHHHHHH----------HHHTTCCHHHHHHHHHHHHHHHHHHHHHHH----CCCSSEEEESGGGGCHHHHHHHHH
T ss_pred ccchhhhhHHHH----------hhhccccHHHHHHHHHHHHHHHHHHHHHhc----ccCCeEEEecCccchHHHHHHHHH
Confidence 100000000000 000011234566666666665555544443 456789999999999999999999
Q ss_pred hcCCCCCcCCCChhHHHhHHHHHHhHhh
Q 005099 425 MTGREPNVTVNPDEVVALGAAVQAGVLA 452 (714)
Q Consensus 425 ~fg~~~~~~~np~eaVA~GAa~~aa~ls 452 (714)
.||.++..+.||++++|+|||++|....
T Consensus 229 ~~g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 229 EINTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp HHTSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred HHCCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999997543
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-17 Score=174.54 Aligned_cols=204 Identities=16% Similarity=0.214 Sum_probs=141.4
Q ss_pred eEEEEecCCCCHHHH-HHHHHHHHHcCC------------CeeEEechhHHHHHHcccccC------CCceEEEEEeCCc
Q 005099 211 KAVVTVPAYFNDSQR-TATKDAGRIAGL------------DVLRIINEPTAASLAYGFEKK------NNETILVFDLGGG 271 (714)
Q Consensus 211 ~~VITVPa~f~~~qR-~~l~~Aa~~AGl------------~~~~li~Ep~AAAlay~~~~~------~~~~vLVvD~GgG 271 (714)
.+++.+|..+...+| +++++++..++- ..+.+++||.||+++++.+.. .+..++|+|+|||
T Consensus 115 ~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGgg 194 (355)
T 3js6_A 115 VIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSG 194 (355)
T ss_dssp EEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSS
T ss_pred EEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCC
Confidence 789999999998887 589998875543 457899999999999986531 3688999999999
Q ss_pred ceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeee
Q 005099 272 TFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNIS 351 (714)
Q Consensus 272 T~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~ 351 (714)
|+|++++. ++.+ +...++...+||..+++.+.+++.+++. +..+. . ...++-+. +..
T Consensus 195 Ttd~~v~~--~~~~-~~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~-------~~i~~g~~-~~~------- 251 (355)
T 3js6_A 195 TTIIDTYQ--NMKR-VEEESFVINKGTIDFYKRIASHVSKKSE---GASIT--P-------RMIEKGLE-YKQ------- 251 (355)
T ss_dssp CEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHHTC-----------C--H-------HHHHSCCC-----------
T ss_pred cEEEEEEc--CCEE-ccccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--H-------HHHhcCCc-ccc-------
Confidence 99999983 4332 1112334679999999999999887642 22221 1 11111111 000
Q ss_pred ccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchh--HHHHHHhhcCCC
Q 005099 352 LPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPA--VQELVKKMTGRE 429 (714)
Q Consensus 352 i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~--v~~~l~~~fg~~ 429 (714)
...+ ..-.+.+ .+.+++.++++++++.+.|++.+.+ ++.++.|+|+||++.++. |++.|++.|+..
T Consensus 252 -----~~~~--~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~~ 319 (355)
T 3js6_A 252 -----CKLN--QKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDVFEKA 319 (355)
T ss_dssp -----------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSCEECC
T ss_pred -----cccc--ccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHHCCCC
Confidence 0000 0001112 3457778888888888888888864 356799999999999998 999999988442
Q ss_pred CCcCCCChhHHHhHHHHHHhHhhC
Q 005099 430 PNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 430 ~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
.||..|+|.|+..++..+.+
T Consensus 320 ----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 320 ----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp ----SSGGGHHHHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHHHh
Confidence 89999999999999887653
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-16 Score=168.64 Aligned_cols=203 Identities=20% Similarity=0.188 Sum_probs=143.5
Q ss_pred CeEEEEecCCCCH--HHHHHHHHHHHHc--------C------CCeeEEechhHHHHHHcccccCCCceEEEEEeCCcce
Q 005099 210 TKAVVTVPAYFND--SQRTATKDAGRIA--------G------LDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 273 (714)
Q Consensus 210 ~~~VITVPa~f~~--~qR~~l~~Aa~~A--------G------l~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~ 273 (714)
..+|+++|..+.. .+|+.+++....- | +..+.+++||.+|.+.+. ....+..++|+|+||||+
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~-~~~~~~~v~vvDiGggTt 184 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ-ENFKNKNVAVIDFGGLNM 184 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC-CCCTTCEEEEEEECSSCE
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc-hhhccCCEEEEEeCCCcE
Confidence 3789999998774 3687887776621 2 134678999999888763 222468999999999999
Q ss_pred EEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHh-ccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeec
Q 005099 274 DVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS-NFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISL 352 (714)
Q Consensus 274 Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~-~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i 352 (714)
|++++. ++.+ +...++...+||.++++.|.+++.. ++.. .+.. ..+|++|+. .. ..
T Consensus 185 d~~v~~--~g~~-~~~~~~~~~~G~~~~~~~i~~~l~~~~~g~----~i~~---------~~~e~i~~~-g~---~~--- 241 (329)
T 4apw_A 185 GFSLYR--NCVV-NPSERFIEEHGVKDLIIRVGDALTDLNNGN----LITN---------EQAESALNN-GY---MK--- 241 (329)
T ss_dssp EEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHTSSSSCSSCS----CTTS---------BTTTTCSSS-CS---SC---
T ss_pred EEEEEE--CCEE-eeccccchhhHHHHHHHHHHHHHHhhccCC----CCCH---------HHHHHHHhc-CC---cc---
Confidence 999998 3333 2223345789999999999988776 5442 2221 134455543 11 00
Q ss_pred cccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCc
Q 005099 353 PFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNV 432 (714)
Q Consensus 353 ~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~ 432 (714)
. + .++ ..++.+++++.++++++++.+.+++. +.+++.++.|+|+||++.+ +.+.|++.|+.++..
T Consensus 242 --~--g----~~~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~l~~~~~~~v~v 306 (329)
T 4apw_A 242 --K--G----GEI-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQISKTYPNNSII 306 (329)
T ss_dssp --E--E----CTT-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHHHHHHSTTCEEC
T ss_pred --c--C----Ccc-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHHHHHHcCCCCEe
Confidence 0 0 011 13456778888888888887777766 2455668999999999998 569999999877778
Q ss_pred CCCChhHHHhHHHHHHhHh
Q 005099 433 TVNPDEVVALGAAVQAGVL 451 (714)
Q Consensus 433 ~~np~eaVA~GAa~~aa~l 451 (714)
..||..|+|+|+..++...
T Consensus 307 ~~~P~~a~a~G~~~~~~~k 325 (329)
T 4apw_A 307 TNNSQWTTCEGLYKVAVAK 325 (329)
T ss_dssp CSSGGGHHHHHHHHHHHHH
T ss_pred cCCChhhHHHHHHHHHhhh
Confidence 8899999999999887653
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-14 Score=158.87 Aligned_cols=179 Identities=17% Similarity=0.175 Sum_probs=124.1
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecC---CCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN---GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE 153 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~---~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~ 153 (714)
..|+||+||.++++++..++.|.++ +||+|+.... ...+||..+... .
T Consensus 24 ~~iVID~GS~~~kaG~ag~~~P~~v--------~PSvVg~~~~~~~~~~~vG~e~~~~---~------------------ 74 (498)
T 3qb0_A 24 SAVVIDPGSYTTNIGYSGSDFPQSI--------LPSVYGKYTADEGNKKIFSEQSIGI---P------------------ 74 (498)
T ss_dssp SCEEEECCSSEEEEEETTCSSCSEE--------EESEEEEESSCSSCCEECCTTGGGS---C------------------
T ss_pred CeEEEECCCcEEEEEECCCCCeeee--------cCceeEEeccCCCccEEEecHHHhc---C------------------
Confidence 4789999999999998766666555 6999998653 246677753111 0
Q ss_pred hhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCC--CcC-eEEEEecCCCCHHHHHHHHH
Q 005099 154 VDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLND--SVT-KAVVTVPAYFNDSQRTATKD 230 (714)
Q Consensus 154 v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~--~v~-~~VITVPa~f~~~qR~~l~~ 230 (714)
.+.+.+..+-+...+.--+....+++|+... .++. .-. .++||.|.......|+.+.+
T Consensus 75 ----------------r~~l~l~~Pi~~GvI~dwd~~E~iw~~~f~~---~L~v~p~~~~pvlltep~~n~~~~Re~~~e 135 (498)
T 3qb0_A 75 ----------------RKDYELKPIIENGLVIDWDTAQEQWQWALQN---ELYLNSNSGIPALLTEPVWNSTENRKKSLE 135 (498)
T ss_dssp ----------------CTTEEEEESEETTEESCHHHHHHHHHHHHHH---TSCCSCCTTCCEEEEECTTCCHHHHHHHHH
T ss_pred ----------------cCceEEeccCcCCEEccHHHHHHHHHHHHHh---hhCCCcccCCceEEEeCCCCcHHHHHHHHH
Confidence 0112222222222333445666666666543 2322 123 68999999999999999988
Q ss_pred HH-HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHH
Q 005099 231 AG-RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL 309 (714)
Q Consensus 231 Aa-~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l 309 (714)
.+ +.+|+.-+.++.+|.+|+++++.. +-||+|+|+|+++++.+. +|.. +........+||+++|+.|.++|
T Consensus 136 ilFE~f~vpav~l~~~~vlalya~G~~-----tglVVDiG~g~T~vvPI~--~G~~-l~~ai~rl~vgG~~lt~~L~~lL 207 (498)
T 3qb0_A 136 VLLEGMQFEACYLAPTSTCVSFAAGRP-----NCLVVDIGHDTCSVSPIV--DGMT-LSKSTRRNFIAGKFINHLIKKAL 207 (498)
T ss_dssp HHHTTSCCSEEEEEEHHHHHHHHHTCS-----SEEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCSHHHHHHHHHHHT
T ss_pred HHHhhcCCCeEeecchHHHHHHHcCCC-----eEEEEEcCCCcEEEEEEe--CCEE-ccccceeccccHHHHHHHHHHHH
Confidence 65 789999999999999999999863 349999999999999885 3321 11111125799999999999999
Q ss_pred Hh
Q 005099 310 AS 311 (714)
Q Consensus 310 ~~ 311 (714)
..
T Consensus 208 ~~ 209 (498)
T 3qb0_A 208 EP 209 (498)
T ss_dssp TT
T ss_pred Hh
Confidence 75
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-15 Score=163.38 Aligned_cols=244 Identities=17% Similarity=0.111 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC--cCeEEEEecCCCCHHHHHHHHHHH-HHcCCCeeEEechhHHHHHHcccccC--C-C
Q 005099 187 EEISAQVLRKLVDDASKFLNDS--VTKAVVTVPAYFNDSQRTATKDAG-RIAGLDVLRIINEPTAASLAYGFEKK--N-N 260 (714)
Q Consensus 187 eev~a~~L~~l~~~a~~~~~~~--v~~~VITVPa~f~~~qR~~l~~Aa-~~AGl~~~~li~Ep~AAAlay~~~~~--~-~ 260 (714)
-+....+++|+.. +.++.. -..+++|.|......+|+.+.+.+ +..|++-+.++.+|.+|+++.+.... . .
T Consensus 102 wd~~e~iw~~~~~---~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~ 178 (427)
T 3dwl_A 102 WDHMERFWQQSLF---KYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRS 178 (427)
T ss_dssp HHHHHHHHHHHHH---TTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCC
T ss_pred HHHHHHHHHHHHh---HhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCC
Confidence 3455555555543 233322 247999999999999999998887 78999999999999999999885421 1 3
Q ss_pred ceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhh
Q 005099 261 ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKM 340 (714)
Q Consensus 261 ~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~ 340 (714)
.+-||+|+|+|+|+++.+. ++..+ ........+||+++|+.|.++|..+..... =.+.+|.+|+
T Consensus 179 ~tglVVDiG~g~T~v~PV~-~G~~l--~~~~~rl~~gG~~lt~~L~~lL~~~~~~~~-------------~~~~~~~IKe 242 (427)
T 3dwl_A 179 LTGTVVDSGDGVTHIIPVA-EGYVI--GSSIKTMPLAGRDVTYFVQSLLRDRNEPDS-------------SLKTAERIKE 242 (427)
T ss_dssp CCEEEEEESSSCEEEEEEE-TTEEC--GGGCEEESCCHHHHHHHHHHTTC---------------------CHHHHHHHH
T ss_pred ceEEEEECCCCceEEEEEE-CCEEe--hhhheeccccHHHHHHHHHHHHHHcCCCch-------------hHHHHHHHHH
Confidence 5689999999999999884 22111 111112479999999999998876543200 0245677777
Q ss_pred hcCCCcee---ee--------ecccc-ccCCCCCceeEEEecHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCC
Q 005099 341 ELSSLTQT---NI--------SLPFI-TATADGPKHIDTTLTRVKFE---ELCSDL------LDRLKTPVETSLRDAKLS 399 (714)
Q Consensus 341 ~Ls~~~~~---~i--------~i~~~-~~~~~g~~~~~~~itr~efe---~l~~~l------~~~i~~~i~~~L~~a~~~ 399 (714)
.++..... ++ .+... ....+| ....++|..+.|. -+++|- ...|.+.|.+.|.++..+
T Consensus 243 ~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g-~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~d 321 (427)
T 3dwl_A 243 ECCYVCPDIVKEFSRFDREPDRYLKYASESITG-HSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPID 321 (427)
T ss_dssp HHCCCCSCHHHHHHHTTC-----CCBCC----------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHH
T ss_pred hcCcccCCHHHHHHHhhcCccccceeEeeCCCC-CeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHH
Confidence 76643210 00 00000 000011 2235667777663 344441 234777888888764321
Q ss_pred --CCCCCEEEEEcCCCCchhHHHHHHhhcC----------------------CCCCcCCCChhHHHhHHHHHHhH
Q 005099 400 --FKDLDEVILVGGSTRIPAVQELVKKMTG----------------------REPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 400 --~~~i~~VvLvGGssrip~v~~~l~~~fg----------------------~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
+.-...|+|+||+|.+|.+.+.|.+.+. .++..+.++..++=+|++++|..
T Consensus 322 lr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl 396 (427)
T 3dwl_A 322 VRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQT 396 (427)
T ss_dssp HHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHS
T ss_pred HHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccc
Confidence 1112569999999999999999887541 11222346678999999999863
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=129.11 Aligned_cols=106 Identities=18% Similarity=0.260 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHH
Q 005099 597 EKRDAIDTKNQADSVVYQTEKQLKE--LGDKVPAEVKGKVEGKLKELKDAIAEG---STQAMKDTMAALNQEVMQLGQSL 671 (714)
Q Consensus 597 ~~~~~~~~~n~lE~~i~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~i~~~~ 671 (714)
++|+++++||+||+|||++++.|.+ +.++++++++++|...|+++++||+.+ +.++|+.++++|++.+.+|..++
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~k~ 82 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGL 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999987 889999999999999999999999975 49999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeee
Q 005099 672 YNQPGAGAAPGAGPTPGAEAGASDSSNKGQDGDVID 707 (714)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (714)
|+++|++ + +||.||+.++ .+++.||.+|++|
T Consensus 83 y~~~~~~-~--~~~~~~~~~~--~~~~~gp~~eevd 113 (113)
T 3lof_A 83 YQGAGGP-G--PGGFGAQGPK--GGSGSGPTIEEVD 113 (113)
T ss_dssp HHC---------------------------------
T ss_pred HHhccCC-C--CCCCCCCCCC--CCCCCCCCCCCCC
Confidence 9864321 1 1121221111 1234567777765
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-14 Score=126.09 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=70.1
Q ss_pred HHHHHHhhhhHHHHHHHHHH--HhccCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005099 601 AIDTKNQADSVVYQTEKQLK--ELGDKVPAEVKGKVEGKLKELKDAIAEG---STQAMKDTMAALNQEVMQLGQSLYNQP 675 (714)
Q Consensus 601 ~~~~~n~lE~~i~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~i~~~~~~~~ 675 (714)
++++||+||+|||.+++.|. ++.++++++++++|...|+++++||+++ +.++|++++++|++.+.+|..++|..+
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~~~~~~ 81 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSA 81 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999998 5888999999999999999999999854 789999999999999999999999754
Q ss_pred CCCCC
Q 005099 676 GAGAA 680 (714)
Q Consensus 676 ~~~~~ 680 (714)
++.++
T Consensus 82 ~~~~~ 86 (113)
T 1ud0_A 82 GGMPG 86 (113)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 44443
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=124.22 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Q 005099 598 KRDAIDTKNQADSVVYQTEKQLKE--LGDKVPAEVKGKVEGKLKELKDAIAEG---STQAMKDTMAALNQEVMQLGQSLY 672 (714)
Q Consensus 598 ~~~~~~~~n~lE~~i~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~i~~~~~ 672 (714)
+|+++++||+||+|||.+++.|.+ +.++++++++++|...|+++++||+++ +.++|+.++++|++.+.+|..++|
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~y 92 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLY 92 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999987 888999999999999999999999965 899999999999999999999999
Q ss_pred cCCC
Q 005099 673 NQPG 676 (714)
Q Consensus 673 ~~~~ 676 (714)
+.++
T Consensus 93 ~~~~ 96 (120)
T 2p32_A 93 QSAG 96 (120)
T ss_dssp CC--
T ss_pred Hhcc
Confidence 6433
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-10 Score=130.50 Aligned_cols=118 Identities=17% Similarity=0.251 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHH-hhcCCCcC-----eEEEEecCCCCHHHHHHHHHH-HHHcCCCeeEEechhHHHHHHcccccC
Q 005099 186 AEEISAQVLRKLVDDAS-KFLNDSVT-----KAVVTVPAYFNDSQRTATKDA-GRIAGLDVLRIINEPTAASLAYGFEKK 258 (714)
Q Consensus 186 ~eev~a~~L~~l~~~a~-~~~~~~v~-----~~VITVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAlay~~~~~ 258 (714)
..+...+ +..|++++- +.++.... .+++|.|..++...|+.|-+. .+..|+.-+.++.++.+|+++++..
T Consensus 170 ~~~~wdd-~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~-- 246 (593)
T 4fo0_A 170 LTAVLAD-IEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS-- 246 (593)
T ss_dssp HHHHHHH-HHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS--
T ss_pred hhcCHHH-HHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC--
Confidence 3444444 344555543 45665433 499999999999999988765 5667999999999999999999864
Q ss_pred CCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhc
Q 005099 259 NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 312 (714)
Q Consensus 259 ~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~ 312 (714)
+-||||+|.+.|.|+-+.- |.. +........+||+++++.|.++|..+
T Consensus 247 ---tglVVDiG~~~T~v~PV~d--G~~-l~~~~~rl~~GG~~lt~~L~~lL~~~ 294 (593)
T 4fo0_A 247 ---STCIVDVGDQKTSVCCVED--GVS-HRNTRLCLAYGGSDVSRCFYWLMQRA 294 (593)
T ss_dssp ---EEEEEEECSSCEEEEEEES--SCB-CGGGCEEESCCHHHHHHHHHHHHHHT
T ss_pred ---ceEEEEeCCCceeeeeeEC--CEE-ehhheEEecccHHHHHHHHHHHHHhc
Confidence 5699999999998877652 211 11111124799999999999998765
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-12 Score=140.20 Aligned_cols=199 Identities=20% Similarity=0.187 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHc-CC--CeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCCh
Q 005099 222 DSQRTATKDAGRIA-GL--DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGG 298 (714)
Q Consensus 222 ~~qR~~l~~Aa~~A-Gl--~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG 298 (714)
..+-+.+.+|.+.+ |+ ++-. .||.||+++.+.+...+..+.++||||||||++++.-+.-.+ ......||
T Consensus 367 ~~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~-----a~~ip~gG 439 (610)
T 2d0o_A 367 RLQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDII-----ATHLAGAG 439 (610)
T ss_dssp CCCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEE-----EEEEECSH
T ss_pred HHHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE-----EEEeccch
Confidence 44577889999999 99 6666 999999999999888889999999999999999997555444 23367999
Q ss_pred hHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce----------eeeec--cccccCCCCCc---
Q 005099 299 DDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ----------TNISL--PFITATADGPK--- 363 (714)
Q Consensus 299 ~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~----------~~i~i--~~~~~~~~g~~--- 363 (714)
++++..|..-|.-. | +..||++|+ ...... ..+.+ +.+....- ..
T Consensus 440 ~~VT~DIA~~Lgt~-------d-----------~~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lgp~~~-~Rv~~ 499 (610)
T 2d0o_A 440 DMVTMIIARELGLE-------D-----------RYLAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLPPAVF-ARVCV 499 (610)
T ss_dssp HHHHHHHHHHHTCC-------C-----------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGT-TCEEE
T ss_pred HHHHHHHHHHhCCC-------C-----------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCccee-eeeec
Confidence 99999998776433 0 357999998 543211 12333 22211100 01
Q ss_pred ---eeEEEecHHH--HHHHHHHHHHHHHHH--HHHHHHHcCC-----CCCCCCEEEEEcCCCCchhHHHHHHhhcCC-CC
Q 005099 364 ---HIDTTLTRVK--FEELCSDLLDRLKTP--VETSLRDAKL-----SFKDLDEVILVGGSTRIPAVQELVKKMTGR-EP 430 (714)
Q Consensus 364 ---~~~~~itr~e--fe~l~~~l~~~i~~~--i~~~L~~a~~-----~~~~i~~VvLvGGssrip~v~~~l~~~fg~-~~ 430 (714)
..-..| +.. +|+ ++-+-+++.+. +.++|+..+. ...+|..|+|+||+|.++.+.++..+.|+. ++
T Consensus 500 ~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~V 577 (610)
T 2d0o_A 500 VKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRL 577 (610)
T ss_dssp ECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSC
T ss_pred ccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCe
Confidence 112355 566 776 55555554444 3444655432 245679999999999999999999999977 44
Q ss_pred C-------cCCCChhHHHhHHHHHHh
Q 005099 431 N-------VTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 431 ~-------~~~np~eaVA~GAa~~aa 449 (714)
. ..-.|..|+|.|.+++.+
T Consensus 578 RiGrP~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 578 VAGRGNIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp EEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred EEecCCccccCCCcHHHHHHHHHHHh
Confidence 2 234899999999998754
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-12 Score=139.35 Aligned_cols=196 Identities=18% Similarity=0.137 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHc-CC--CeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhH
Q 005099 224 QRTATKDAGRIA-GL--DVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 300 (714)
Q Consensus 224 qR~~l~~Aa~~A-Gl--~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d 300 (714)
+-+.+.+|.+.+ |+ ++-. .||.||+++.+.+...+..+.++||||||||++++.-+.-.+ ......||++
T Consensus 371 ~m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~-----a~~ip~gG~~ 443 (607)
T 1nbw_A 371 QMQVIARELSARLQTEVVVGG--VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQIT-----AVHLAGAGNM 443 (607)
T ss_dssp CSCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEE-----EEEEECCHHH
T ss_pred HHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE-----EEEeccchHH
Confidence 456688888888 99 6555 999999999999888889999999999999999997655444 2336799999
Q ss_pred HHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCce----------eeeec--cccccCCCCCc-----
Q 005099 301 FDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQ----------TNISL--PFITATADGPK----- 363 (714)
Q Consensus 301 ~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~----------~~i~i--~~~~~~~~g~~----- 363 (714)
++..|..-|.-. | +..||++|+ ...... ..+.+ +.+....- ..
T Consensus 444 VT~DIA~~Lg~~-------d-----------~~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lgp~~~-~R~~~~~ 503 (607)
T 1nbw_A 444 VSLLIKTELGLE-------D-----------LSLAEAIKK-YPLAKVESLFSIRHENGAVEFFREALSPAVF-AKVVYIK 503 (607)
T ss_dssp HHHHHHHHHTCS-------C-----------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGT-TCEEEEE
T ss_pred HHHHHHHHhCCC-------C-----------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCccee-eeeeccc
Confidence 999998776433 0 357999998 543211 12333 22211100 01
Q ss_pred -eeEEEecHHH--HHHHHHHHHHHHHHH--HHHHHHHcCCC-----CCCCCEEEEEcCCCCchhHHHHHHhhcCC-CCC-
Q 005099 364 -HIDTTLTRVK--FEELCSDLLDRLKTP--VETSLRDAKLS-----FKDLDEVILVGGSTRIPAVQELVKKMTGR-EPN- 431 (714)
Q Consensus 364 -~~~~~itr~e--fe~l~~~l~~~i~~~--i~~~L~~a~~~-----~~~i~~VvLvGGssrip~v~~~l~~~fg~-~~~- 431 (714)
..-..| +.. +|+ ++-+-+++.+. +.++|+..+.. ..+|..|+|+||+|.++.+.++..+.|+. ++.
T Consensus 504 ~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRi 581 (607)
T 1nbw_A 504 EGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVA 581 (607)
T ss_dssp TTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEE
T ss_pred ccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEE
Confidence 112355 555 666 55555555444 45568876643 34679999999999999999999999966 432
Q ss_pred ------cCCCChhHHHhHHHHHH
Q 005099 432 ------VTVNPDEVVALGAAVQA 448 (714)
Q Consensus 432 ------~~~np~eaVA~GAa~~a 448 (714)
..-.|..|+|.|.+++.
T Consensus 582 GrP~~~g~~gP~fAtAvGLlly~ 604 (607)
T 1nbw_A 582 GQGNIRGTEGPRNAVATGLLLAG 604 (607)
T ss_dssp EECCGGGTSCSCCHHHHHHHHHH
T ss_pred ecCCccccCCchHHHHHHHHHhh
Confidence 23489999999999764
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=98.76 E-value=3.8e-07 Score=94.09 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHh
Q 005099 375 EELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVL 451 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~l 451 (714)
++++..+++.+...+.+.++..++ .+.|+++||.++.|.+++.+.+.++.++..+.+|+.+.|+|||++|...
T Consensus 185 ~di~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 185 IDIIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 344445555555555455543221 3679999999999999999999999988888888889999999998763
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.8e-05 Score=89.15 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=91.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHH-HHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCceEEEE
Q 005099 210 TKAVVTVPAYFNDSQRTATKDAG-RIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVL 288 (714)
Q Consensus 210 ~~~VITVPa~f~~~qR~~l~~Aa-~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl 288 (714)
..+++|.|..+....|+.|.+.+ +..|+.-+.++.+|.+|+++++. ..+-||+|+|+|+|+++.+. +|.. +.
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl----~ttGLVVDiG~g~T~VvPV~--eG~v-l~ 294 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI----STSTCVVNIGAAETRIACVD--EGTV-LE 294 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC----SSCEEEEEECSSCEEEEEEE--TTEE-CG
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC----CCceEEEcCCCceEEEEEEe--CCEE-Eh
Confidence 47999999999999999998877 56899999999999999999875 24569999999999999874 2211 11
Q ss_pred EecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCcee
Q 005099 289 STSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQT 348 (714)
Q Consensus 289 ~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~ 348 (714)
.......+||+++|+.|.++|..+--.....++.. .. =...++.+|+.++.....
T Consensus 295 ~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t--~~---e~eiVrdIKEk~CyVs~~ 349 (655)
T 4am6_A 295 HSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDS--KH---GWLLAERLKKNFTTFQDA 349 (655)
T ss_dssp GGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTS--HH---HHHHHHHHHHHHCCCCGG
T ss_pred hheeeecchHHHHHHHHHHHHHHcCCCccccCCCC--cc---hHHHHHHHHHheEEEccc
Confidence 11112589999999999999987621000111111 11 145678899998876433
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0055 Score=63.06 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=40.9
Q ss_pred CCEEEEEcC-CCCchhHHHHHHhhc---CCCCCcCCCChhHHHhHHHHHH
Q 005099 403 LDEVILVGG-STRIPAVQELVKKMT---GREPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 403 i~~VvLvGG-ssrip~v~~~l~~~f---g~~~~~~~np~eaVA~GAa~~a 448 (714)
++.|+++|| .+..|.+++.|.+++ +.++..+.+|..+.|+|||+.+
T Consensus 237 i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 237 TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHHHHhC
Confidence 557999999 899999999999974 6778889999999999999874
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0067 Score=64.21 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHcCCCCCCCCEEEEEcC-CCCchhHHHHHHhhcC------CCCCcCCCChhHHHhH
Q 005099 375 EELCSDLLDRLKTPVETSL----RDAKLSFKDLDEVILVGG-STRIPAVQELVKKMTG------REPNVTVNPDEVVALG 443 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L----~~a~~~~~~i~~VvLvGG-ssrip~v~~~l~~~fg------~~~~~~~np~eaVA~G 443 (714)
|+++..++..+.+.|-... +..+ ++.|+++|| .+..|.+++.|.+.++ .++..+.+|..+-|+|
T Consensus 279 eDIa~gll~sVa~~I~~lA~l~A~~~~-----i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlG 353 (360)
T 2i7n_A 279 EDLARATLVTITNNIGSIARMCALNEN-----IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVG 353 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHH
Confidence 4555555555555544432 3433 446999999 8999999999999863 5677788999999999
Q ss_pred HHHHH
Q 005099 444 AAVQA 448 (714)
Q Consensus 444 Aa~~a 448 (714)
||+.+
T Consensus 354 AaL~~ 358 (360)
T 2i7n_A 354 ALLEL 358 (360)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99975
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.82 Score=47.84 Aligned_cols=63 Identities=24% Similarity=0.240 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc---CCCCCcCC---CChhHHHhHHHHHHhH
Q 005099 383 DRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT---GREPNVTV---NPDEVVALGAAVQAGV 450 (714)
Q Consensus 383 ~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f---g~~~~~~~---np~eaVA~GAa~~aa~ 450 (714)
+.+.+.+.++.+..+ ++.|+|+||.+....+++.|.+.+ |.++..+. --|.++++|+|.+...
T Consensus 230 ~~l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~ 298 (330)
T 2ivn_A 230 AALVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMY 298 (330)
T ss_dssp HHHHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHH
Confidence 344444455555433 568999999999999999999877 44444433 2367889998876543
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.38 Score=50.55 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc---CCCCCcCC---CChhHHHhHHHHHHhHhhC
Q 005099 381 LLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT---GREPNVTV---NPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 381 l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f---g~~~~~~~---np~eaVA~GAa~~aa~ls~ 453 (714)
+.+.+.+.+.++++..+ ++.|+|+||.+....+++.|.+.+ |.++..+. -.|.++++|+|.+.....+
T Consensus 233 l~~~l~~~~~~a~~~~g-----~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~g 306 (334)
T 3eno_A 233 AFAMLVEVLERALYVSG-----KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKSG 306 (334)
T ss_dssp HHHHHHHHHHHHHHHHT-----CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC-----CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHHHHHHcC
Confidence 34455556666666644 578999999999999999999887 55544433 3488999999876554444
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.71 Score=47.99 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=30.2
Q ss_pred cCCCeeEEechhHHHHHHcccc--cCCCceEEEEEeCCcceEEEEEE
Q 005099 235 AGLDVLRIINEPTAASLAYGFE--KKNNETILVFDLGGGTFDVSVLE 279 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~--~~~~~~vLVvD~GgGT~Dvsv~~ 279 (714)
.|++ +.+.|+..|+|++.... .+...+++++-+|.| +-..++.
T Consensus 96 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~ 140 (321)
T 3vgl_A 96 VGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIII 140 (321)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE
T ss_pred hCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEE
Confidence 3776 58999999999975433 123467888889988 5555553
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.85 Score=47.57 Aligned_cols=47 Identities=23% Similarity=0.121 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcCCC---------CCcCCCChhHHHhHHHHHH
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTGRE---------PNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg~~---------~~~~~np~eaVA~GAa~~a 448 (714)
+++.|+|-||.+..+.+.+.|++.+... +....-.+.+.++|||..+
T Consensus 269 ~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 269 DPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp CCSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred CCCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence 3578999999988877777777665321 1122245789999999765
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=1.7 Score=44.48 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcC-CCCCcCCCChhHHHhHHHHHHhH
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTG-REPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg-~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
+++.|+|.||.+..+.+.+.|++.+. .++..+. .+.+.++||+..+..
T Consensus 239 ~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 239 GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDL-GKRSPEIGAVILAYK 287 (299)
T ss_dssp TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEEC-CSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCccCcHHHHHHHHHHCCCCeEeccC-CCCChHHHHHHHHHH
Confidence 45689999998877888888887773 3454455 668899999988754
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.013 Score=66.26 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=62.4
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHH
Q 005099 369 LTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 369 itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~a 448 (714)
-+|.++-.++.-+++.+.-.++..++...-....++.|.++||.++.+.+.+.+.+.||.++.... ..|+.|+|||+.|
T Consensus 409 ~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~~-~~e~~alGAA~lA 487 (554)
T 3l0q_A 409 TTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANATGCAMLLPE-ESEAMLLGSAMMG 487 (554)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHHCCEEEEES-CSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhhCCeEEecC-CCcchHHHHHHHH
Confidence 378887554556666665555554443221224578999999999999999999999999876654 4679999999999
Q ss_pred hHhhCC
Q 005099 449 GVLAGD 454 (714)
Q Consensus 449 a~ls~~ 454 (714)
+.-.+.
T Consensus 488 ~~a~G~ 493 (554)
T 3l0q_A 488 TVAAGV 493 (554)
T ss_dssp HHHTTS
T ss_pred HHHcCC
Confidence 875553
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.011 Score=65.64 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
+++-+++.+.-.++.+++........++.|.++||.++.+.+.+.+.+.+|.++.....++.+.|+|||+.|+.-.+.
T Consensus 361 ~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~lA~~~~g~ 438 (484)
T 2itm_A 361 LARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANP 438 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHHHHHHcCC
Confidence 344555555444444444332122356789999999999999999999999988877666656999999999875553
|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.28 Score=51.01 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=29.3
Q ss_pred cCCCeeEEechhHHHHHHccccc--CCCceEEEEEeCCcceEEEEE
Q 005099 235 AGLDVLRIINEPTAASLAYGFEK--KNNETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~--~~~~~vLVvD~GgGT~Dvsv~ 278 (714)
.|++ +.+.|+..|+|++..... ....+++++-+|.| +-..++
T Consensus 108 ~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv 151 (326)
T 2qm1_A 108 LGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIV 151 (326)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEE
Confidence 3666 589999999998753321 23467888889988 455554
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.015 Score=65.25 Aligned_cols=80 Identities=18% Similarity=0.073 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHh
Q 005099 370 TRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 370 tr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa 449 (714)
+|.+| ++-+++.+.-.++..++...- .. ++.|.++||.++.+.+.+.+.+.||.++.....+.|+.|+|||+.|+
T Consensus 375 ~~~~l---~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~~e~~alGaA~lA~ 449 (511)
T 3hz6_A 375 TRAQI---LLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAA 449 (511)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHHTCEEEECCCGGGHHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHHCCeeEEecCCCCchHHHHHHHHH
Confidence 45444 455555555555555544322 23 78999999999999999999999999872334588999999999998
Q ss_pred HhhCC
Q 005099 450 VLAGD 454 (714)
Q Consensus 450 ~ls~~ 454 (714)
.-.+.
T Consensus 450 ~a~G~ 454 (511)
T 3hz6_A 450 VELEW 454 (511)
T ss_dssp HHTTS
T ss_pred HHhCC
Confidence 76554
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.017 Score=64.56 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
+++.-+++.+.-.++..++...-.. .++.|.++||.++.+.+.+.+.+.+|.++.... +.|+.|+|||+.|+.-.+.
T Consensus 368 ~l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~-~~e~~alGaA~lA~~~~g~ 444 (497)
T 2zf5_O 368 HLARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADILNRKVIRPV-VKETTALGAAYLAGLAVDY 444 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEES-CSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhcCCeEEEcC-CCcchHHHHHHHHHHHhCc
Confidence 3455566666666666666543333 678999999999999999999999999886554 4569999999999875553
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.02 Score=63.94 Aligned_cols=81 Identities=11% Similarity=0.061 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHh
Q 005099 370 TRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 370 tr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa 449 (714)
++.+| +.-+++.+.-.++..++...-....++.|.++||.++.+.+.+.+.+.||.++... .+.|+.|+|||+.|+
T Consensus 364 ~~~~l---~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~ 439 (504)
T 3ll3_A 364 QKPEM---ARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIFNVPIVTM-KEQQSGTLAAMFLAR 439 (504)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhhCCeEEec-CCCCchhHHHHHHHH
Confidence 45444 45555555444444444322112358899999999999999999999999987664 456799999999998
Q ss_pred HhhCC
Q 005099 450 VLAGD 454 (714)
Q Consensus 450 ~ls~~ 454 (714)
.-.+.
T Consensus 440 ~a~G~ 444 (504)
T 3ll3_A 440 QALGL 444 (504)
T ss_dssp HHTTS
T ss_pred HHcCc
Confidence 75554
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.17 Score=52.80 Aligned_cols=42 Identities=24% Similarity=0.408 Sum_probs=29.3
Q ss_pred CCCeeEEechhHHHHHHcccc--cCCCceEEEEEeCCcceEEEEEE
Q 005099 236 GLDVLRIINEPTAASLAYGFE--KKNNETILVFDLGGGTFDVSVLE 279 (714)
Q Consensus 236 Gl~~~~li~Ep~AAAlay~~~--~~~~~~vLVvD~GgGT~Dvsv~~ 279 (714)
|++ +.+.|+..|+|++-... .+...+++++-+|.| +-..++.
T Consensus 119 ~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~gii~ 162 (321)
T 3r8e_A 119 HIH-FKIENDAKCAALGEYYFGENKRMQTFILLALGTG-VGSGVMM 162 (321)
T ss_dssp TSE-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE
T ss_pred CCC-EEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEE
Confidence 665 58999999999975433 123567888889888 5555543
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.018 Score=64.93 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhh
Q 005099 375 EELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLA 452 (714)
Q Consensus 375 e~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls 452 (714)
..+++-+++.+.-.++..++..+.....++.|.++||.++.+.+.+++.+.||.++... .+.|+.|+|||+.|+.-.
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~a~ 483 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVI-DTANSACVGSAYRAFHGL 483 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEEC-CCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEec-CCCCchHHHHHHHHHHHh
Confidence 45566666666666666666655444567899999999999999999999999987654 457899999999998643
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.4 Score=49.48 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=28.8
Q ss_pred cCCCeeEEechhHHHHHHccccc--CCCceEEEEEeCCcceEEEEE
Q 005099 235 AGLDVLRIINEPTAASLAYGFEK--KNNETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~--~~~~~vLVvD~GgGT~Dvsv~ 278 (714)
.|++ +.+.|+..|+|++-.... +...+++++-+|.| +-..++
T Consensus 98 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii 141 (302)
T 3vov_A 98 TGRP-VFLENDANAAALAEHHLGAAQGEESSLYLTVSTG-IGGGVV 141 (302)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEEechHHHHHHHHHhCCCCCCCCEEEEEECCc-eeEEEE
Confidence 4666 579999999998764432 23467888888887 444444
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=3.1 Score=43.32 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=42.3
Q ss_pred CcCeEEEEecCCCCHHHHHHHHHHHHHc-C--CCeeEEechhHHHHHHcccccCCCceEEEEEeCCcc
Q 005099 208 SVTKAVVTVPAYFNDSQRTATKDAGRIA-G--LDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGT 272 (714)
Q Consensus 208 ~v~~~VITVPa~f~~~qR~~l~~Aa~~A-G--l~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT 272 (714)
++..+.|++|...+......+++..+.. + .-.+.+.|+..|||+++ . ....+++=+|.|.
T Consensus 70 ~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~-~----~~~~v~v~~GTGi 132 (347)
T 2ch5_A 70 PLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA-T----PDGGVVLISGTGS 132 (347)
T ss_dssp CBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH-C----SSCEEEEEESSSE
T ss_pred ceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhh-C----CCCcEEEEEcCCc
Confidence 5778999999999877666666665543 3 13468999999999984 2 2345566667664
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.02 Score=64.10 Aligned_cols=74 Identities=24% Similarity=0.416 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHH---HHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 377 LCSDLLDRLKTPVETS---LRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~---L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
++.-+++.+.-.++.+ |++.+ ..++.|.++||.++.+.+.+++.+.||.++... .+.|+.|+|||+.|+.-.+
T Consensus 399 l~RAvlEgia~~~r~~l~~l~~~g---~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA~~a~G 474 (515)
T 3i8b_A 399 LARAFVEGLLCSQRDCLELIRSLG---ASITRILLIGGGAKSEAIRTLAPSILGMDVTRP-ATDEYVAIGAARQAAWVLS 474 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---CCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CCCCEEEEECchhcCHHHHHHHHHHhCCceEec-CCcccHHHHHHHHHHHHcC
Confidence 3444454444333333 33444 357899999999999999999999999987654 4567889999999987555
Q ss_pred C
Q 005099 454 D 454 (714)
Q Consensus 454 ~ 454 (714)
.
T Consensus 475 ~ 475 (515)
T 3i8b_A 475 G 475 (515)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.02 Score=63.95 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----cCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhh
Q 005099 377 LCSDLLDRLKTPVETSLRD----AKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLA 452 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~----a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls 452 (714)
+++-+++.+.-.++.+++. .+ ..++.|.++||.++.+.+.+++.+.||.++... .+.|+.|+|||+.|+.-.
T Consensus 378 l~RAvlEgia~~~~~~~~~l~~~~g---~~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~la~~a~ 453 (501)
T 3g25_A 378 FIRATLESLCYQTRDVMEAMSKDSG---IDVQSLRVDGGAVKNNFIMQFQADIVNTSVERP-EIQETTALGAAFLAGLAV 453 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS---CCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEE-SCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecchhcCHHHHHHHHHHhCCceEec-CCCcchHHHHHHHHHHHh
Confidence 3444444444443333332 34 347899999999999999999999999987554 466799999999998765
Q ss_pred CC
Q 005099 453 GD 454 (714)
Q Consensus 453 ~~ 454 (714)
+.
T Consensus 454 G~ 455 (501)
T 3g25_A 454 GF 455 (501)
T ss_dssp TS
T ss_pred Cc
Confidence 54
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.02 Score=64.10 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
.++.|.++||.++.+.+.+.+.+.||.++..... .|+.|+|||+.|+.-.+.
T Consensus 400 ~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~-~e~~alGaA~lA~~a~G~ 451 (508)
T 3ifr_A 400 APQRFFASDGGTRSRVWMGIMADVLQRPVQLLAN-PLGSAVGAAWVAAIGGGD 451 (508)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEEC-CSTHHHHHHHHHHHHTCS
T ss_pred CCCEEEEeCCcccCHHHHHHHHHHhCCeEEecCC-CCchHHHHHHHHHHHhCC
Confidence 4789999999999999999999999998876654 458899999999875553
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.038 Score=62.10 Aligned_cols=53 Identities=26% Similarity=0.295 Sum_probs=45.6
Q ss_pred CCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 401 KDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 401 ~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
..++.|.++||+++.+.+.+++.+.||.++.++. ..|+.|+|||+.|+.-.|.
T Consensus 401 ~~~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~~-~~E~~alGAA~lA~~a~G~ 453 (526)
T 3ezw_A 401 IRLHALRVDGGAVANNFLMQFQSDILGTRVERPE-VREVTALGAAYLAGLAVGF 453 (526)
T ss_dssp CCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEES-CCCHHHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECchhhCHHHHHHHHHHHCCEEEeCC-CCchHHHHHHHHHHHHhCC
Confidence 3578999999999999999999999999886654 4578999999999986654
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=95.04 E-value=0.024 Score=63.42 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
.++.|.++||.++.+.+.+.+.+.||.++... .+.|+.|+|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~a~G~ 454 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADILDIDVQRA-ANLETTALGAAYLAGLAVGF 454 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHTSEEEEC-SSSCHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEecccccCHHHHHHHHHHhCCeEEec-CCCcchhHHHHHHHHHHhCc
Confidence 47899999999999999999999999987653 46779999999999875554
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.023 Score=63.75 Aligned_cols=52 Identities=21% Similarity=0.115 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
.++.|.++||.++.+.+.+++.+.||.++... .+.|+.|+|||+.|+.-.+.
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA~~a~G~ 476 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRP-VILETTALGVAWLAGSRAGV 476 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCCCHHHHHHHHHHHHHHTS
T ss_pred CcceEEEeCccccCHHHHHHHHHHhCCeEEec-CCCccHHHHHHHHHHHHcCC
Confidence 57889999999999999999999999988654 45679999999999976664
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.045 Score=60.97 Aligned_cols=76 Identities=25% Similarity=0.242 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 377 LCSDLLDRLKTPVETSLRDAK-LSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
++.-+++.+.-.+...++... .....++.|.++||.++.+.+.+++.+.+|.++... .+.|+.|+|||+.|+.-.+
T Consensus 372 ~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~-~~~e~~alGaA~la~~a~G 448 (495)
T 2dpn_A 372 LARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVP-EVTETTALGAALMAGVGAG 448 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHhCCeeEec-CCcccHHHHHHHHHHhhcC
Confidence 344445544444444444321 112346789999999999999999999999887654 4556999999999987554
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.046 Score=61.03 Aligned_cols=52 Identities=29% Similarity=0.331 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
.++.|.++||.++.+.+.+++.+.||.++... .+.|+.|+|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA~~~~G~ 454 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQLGVDVVRP-KVAETTALGAAYAAGIAVGF 454 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHHTS
T ss_pred CcceEEEeCCcccCHHHHHHHHHHhCCeEEeC-CCCcchHHHHHHHHHhhcCc
Confidence 46899999999999999999999999887654 45679999999999875553
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.044 Score=61.22 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=43.4
Q ss_pred CC-CEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhC
Q 005099 402 DL-DEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAG 453 (714)
Q Consensus 402 ~i-~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~ 453 (714)
.+ +.|.++||.++.+.+.+.+.+.+|.++... .+.|+.|+|||+.|+.-.+
T Consensus 406 ~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~-~~~e~~alGaA~la~~~~G 457 (503)
T 2w40_A 406 EMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVS-KYKEVTSLGAAVLAGLEVK 457 (503)
T ss_dssp SCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred CccceEEEeCccccCHHHHHHHHHHHCCeEEec-CCCcchHHHHHHHHHHHhC
Confidence 35 779999999999999999999999887654 4556999999999987554
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.2 Score=52.82 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCeeEEechhHHHHHHcc-c----ccC-CCceEEEEEeCCcceEEEEEEE--cC--ceEEEEEecCCCC
Q 005099 226 TATKDAGRIAGLDVLRIINEPTAASLAYG-F----EKK-NNETILVFDLGGGTFDVSVLEV--GD--GVFEVLSTSGDTH 295 (714)
Q Consensus 226 ~~l~~Aa~~AGl~~~~li~Ep~AAAlay~-~----~~~-~~~~vLVvD~GgGT~Dvsv~~~--~~--~~~~vl~~~gd~~ 295 (714)
..+..+-+..|+++ .+|+..+=|.+.|. . ... ....++|+|+|||+|+++++.- .. +.+ .. .....
T Consensus 106 ~fl~~v~~~tGi~i-eVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~--~~-~~Slp 181 (343)
T 3cer_A 106 EFEDEIERILGVRP-EVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQV--QG-AFSMN 181 (343)
T ss_dssp HHHHHHHHHHSSCC-EECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSC--SE-EEEES
T ss_pred HHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCccccc--ce-eEEEe
Confidence 44555556679987 66666655555552 2 110 2356999999999999999764 22 111 01 22368
Q ss_pred CChhHHHHHH
Q 005099 296 LGGDDFDKRI 305 (714)
Q Consensus 296 lGG~d~D~~l 305 (714)
+|+..+.+.+
T Consensus 182 lG~v~lt~~~ 191 (343)
T 3cer_A 182 IGSVRMTERH 191 (343)
T ss_dssp CCHHHHHHHT
T ss_pred hhHHHHHHHh
Confidence 9999888776
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=6.1 Score=44.10 Aligned_cols=184 Identities=19% Similarity=0.251 Sum_probs=90.4
Q ss_pred CcCeEEEEe-cCCCCHHHHHHH--HHHHHHcCCCeeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEEcCce
Q 005099 208 SVTKAVVTV-PAYFNDSQRTAT--KDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGV 284 (714)
Q Consensus 208 ~v~~~VITV-Pa~f~~~qR~~l--~~Aa~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~~~~~ 284 (714)
+++-+++|. |.+|+.-..-.. +.-+...|.+++. |+.-.|=+++.......... +++-+-||++.+-.+ .++.
T Consensus 72 ~id~ia~~~gPG~~~~l~vg~~~ak~la~~~~~p~~~-v~h~~aH~~~~~~~~~~~~p-~~l~vsGg~t~~~~~--~~~~ 147 (540)
T 3en9_A 72 EIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIG-VNHCIAHIEIGKLTTEAEDP-LTLYVSGGNTQVIAY--VSKK 147 (540)
T ss_dssp GCCEEEEEEESSCHHHHHHHHHHHHHHHHHHTCCEEE-EEHHHHHHHHHHHHSSCSSC-EEEEECSSCEEEEEE--ETTE
T ss_pred HCcEEEEecCCCchhhHHHHHHHHHHHHHHhCCCeeE-eccHHHHHHHHHHhcCCCCC-cEEEEcCCCcEEEEE--eCCc
Confidence 456666666 777664422211 2223344666544 55555544332222111112 555566777765444 4688
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhcCCCceeeeeccccccCCCCCce
Q 005099 285 FEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKH 364 (714)
Q Consensus 285 ~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~i~~~~~~~~g~~~ 364 (714)
+++++..-|.. -|+-||.. ...| |......+ . |...|...+ ..+.+|....+ .+
T Consensus 148 ~~~lg~t~d~s-~G~~~D~~-a~~l--------gl~~~gg~-~---ie~lA~~g~--------~~~~~p~~~~~----~~ 201 (540)
T 3en9_A 148 YRVFGETLDIA-VGNCLDQF-ARYV--------NLPHPGGP-Y---IEELARKGK--------KLVDLPYTVKG----MD 201 (540)
T ss_dssp EEEEEEBSSSC-HHHHHHHH-HHHT--------TCCSSCHH-H---HHHHHHTCC--------CCCCCCCCEET----TE
T ss_pred eEEEeeccchH-hHHHHHHH-HHHc--------CCCCCCHH-H---HHHHHHcCC--------ccCcCCCCCCC----cc
Confidence 99999877644 46666642 2222 22211112 2 222232221 11222221111 11
Q ss_pred eEEEecHH----------HHHHHHH----HHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhc
Q 005099 365 IDTTLTRV----------KFEELCS----DLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 365 ~~~~itr~----------efe~l~~----~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~f 426 (714)
+++.=-.. ..++++. -+++.+.+.+.++++..+ ++.|+|+||-+....+++.|.+.+
T Consensus 202 ~sfsgl~~~~~~~~~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~-----~~~~~~~GGVa~N~~l~~~l~~~~ 272 (540)
T 3en9_A 202 IAFSGLLTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTN-----KGEVMLVGGVAANNRLREMLKAMC 272 (540)
T ss_dssp ECCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEeCcHHhHHHHHHHHHHHH
Confidence 11100000 0122332 234444555666666654 568999999999999999999876
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.11 Score=54.25 Aligned_cols=76 Identities=17% Similarity=0.120 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCCCeeEEechhHHHHHHccccc--CCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHH
Q 005099 225 RTATKDAGRIAGLDVLRIINEPTAASLAYGFEK--KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 302 (714)
Q Consensus 225 R~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~~--~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D 302 (714)
...+..+-+..|+++..|-.|.+|...+.+... ......+|+|+|||+|.+++.+ ++.+. . ..+..+|+..+.
T Consensus 100 ~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~--~~~~~--~-~~Sl~~G~v~l~ 174 (315)
T 1t6c_A 100 EEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGK--GYKVR--E-VISLPIGIVNLT 174 (315)
T ss_dssp HHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEE--TTEEE--E-EEEECCCHHHHH
T ss_pred HHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEe--CCcee--e-EEEEeccHHHHH
Confidence 344555555789998555556666444333221 1246799999999999999976 33331 1 223689998887
Q ss_pred HHH
Q 005099 303 KRI 305 (714)
Q Consensus 303 ~~l 305 (714)
+.+
T Consensus 175 e~~ 177 (315)
T 1t6c_A 175 ETF 177 (315)
T ss_dssp HHH
T ss_pred HHh
Confidence 776
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.064 Score=59.63 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=40.1
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
.++.|.++||.++.+.+.+.+.+.||.++.... .|+.|+|||+.|..
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~--~e~~alGaa~~A~~ 439 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADACGIRVIAGP--VEASTLGNIGIQLM 439 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHTSEEEECC--TTHHHHHHHHHHHH
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHHCCeeecCC--ccHhHHHHHHHHHH
Confidence 468999999999999999999999999886543 68999999666554
|
| >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=93.52 E-value=6.2 Score=40.67 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=28.7
Q ss_pred cCCCeeEEechhHHHHHHccccc--CCCceEEEEEeCCcceEEEEE
Q 005099 235 AGLDVLRIINEPTAASLAYGFEK--KNNETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~--~~~~~vLVvD~GgGT~Dvsv~ 278 (714)
.+++ +.+.|+..|||++..... +...+++++-+|.| +-..++
T Consensus 120 ~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG-iG~giv 163 (327)
T 2ap1_A 120 LDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLV 163 (327)
T ss_dssp HTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc-EEEEEE
Confidence 3666 589999999998753321 23567888888887 444444
|
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.45 Score=53.08 Aligned_cols=74 Identities=23% Similarity=0.340 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCeeEEechhHHHHHHc-ccc--cCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHH
Q 005099 226 TATKDAGRIAGLDVLRIINEPTAASLAY-GFE--KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 302 (714)
Q Consensus 226 ~~l~~Aa~~AGl~~~~li~Ep~AAAlay-~~~--~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D 302 (714)
..+..+-+..|+++ .+|+..+=|.+.| +.. .......||+|+|||+|.+++.+ ++.+.. .....+|.-.+.
T Consensus 100 ~fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~~---~~Sl~lG~vrlt 173 (513)
T 1u6z_A 100 DFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE--NFEPIL---VESRRMGCVSFA 173 (513)
T ss_dssp HHHHHHTTTCSSCE-EECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEE--TTEEEE---EEEESCCHHHHH
T ss_pred HHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEe--CCeeeE---EEEEeccHHHHH
Confidence 34445555569987 6676666555555 221 11123799999999999999875 333321 223689998887
Q ss_pred HHH
Q 005099 303 KRI 305 (714)
Q Consensus 303 ~~l 305 (714)
+.+
T Consensus 174 e~f 176 (513)
T 1u6z_A 174 QLY 176 (513)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=92.12 E-value=3.5 Score=44.11 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=29.2
Q ss_pred cCCCeeEEechhHHHHHHccccc--CCCceEEEEEeCCcceEEEEE
Q 005099 235 AGLDVLRIINEPTAASLAYGFEK--KNNETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~~--~~~~~vLVvD~GgGT~Dvsv~ 278 (714)
.|++ +.+.|+..|||++..... ....+++++-+|.| +-..++
T Consensus 186 ~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv 229 (406)
T 1z6r_A 186 TGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVI 229 (406)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEE
Confidence 3776 589999999999754321 23467888888887 445555
|
| >1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=13 Score=38.37 Aligned_cols=45 Identities=33% Similarity=0.419 Sum_probs=31.0
Q ss_pred HcCCCeeEEechhHHHHHHcccc------------cCCCceEEEEEeCCcceEEEEEE
Q 005099 234 IAGLDVLRIINEPTAASLAYGFE------------KKNNETILVFDLGGGTFDVSVLE 279 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~------------~~~~~~vLVvD~GgGT~Dvsv~~ 279 (714)
..|++.+.+.|+-.|+|++-... .+...+++++-+|.| +=..++.
T Consensus 100 ~~~~p~V~v~NDanaaalgE~~~~~~~~~~~g~g~~~~~~~~~~v~~GTG-iG~giv~ 156 (332)
T 1sz2_A 100 NLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTG-LGVAHLV 156 (332)
T ss_dssp HHTCSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEEEEESSS-EEEEEEE
T ss_pred HhCCCcEEEEeCHhHHhccccccChhhheecCCCCCCCCCcEEEEEcCcc-ceEEEEe
Confidence 34787679999999999976432 123467888889888 3444443
|
| >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=91.62 E-value=1.8 Score=44.10 Aligned_cols=68 Identities=7% Similarity=-0.107 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCc--hhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRI--PAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssri--p~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
....++++..+.+-..+ ...+ ..+++.|+|.||-+.. +.+++.+++.. .....|..+...||+.++..
T Consensus 211 ~A~~i~~~~~~~La~~i-~~~~-~~~p~~vvlgGGv~~~~~~~l~~~l~~~~----~~i~~~~~a~~~GA~~la~~ 280 (291)
T 1zbs_A 211 AVYSLVQNSFDDFLVRN-VLRY-NRPDLPLHFIGSVAFHYREVLSSVIKKRG----LTLGSVLQSPMEGLIQYHHN 280 (291)
T ss_dssp HHHHHHHHHHHHHHHHH-TGGG-CCTTSCEEEESHHHHHTHHHHHHHHHHTT----CCEEEEESCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hccc-CCCCceEEEECchHHhhHHHHHHHHHHcC----CeecccCcCHHHHHHHHHHh
Confidence 34455555555555555 2222 1256789999998776 56666665542 11233668889999998864
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=90.65 E-value=0.51 Score=49.11 Aligned_cols=75 Identities=19% Similarity=0.380 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCCeeEEechhHHHHHHc-ccc--cC-CCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhH
Q 005099 225 RTATKDAGRIAGLDVLRIINEPTAASLAY-GFE--KK-NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 300 (714)
Q Consensus 225 R~~l~~Aa~~AGl~~~~li~Ep~AAAlay-~~~--~~-~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d 300 (714)
...+..+-+..|+++ .+|+..+=|.+.| +.. .. .+...||+|+|||+|.+++++ ++.+.. ....++|.-.
T Consensus 92 ~~fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~~---~~Sl~lG~vr 165 (315)
T 3mdq_A 92 QVLIDRIKKEVNIDV-EVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGN--KNEILW---KQSFEIGGQR 165 (315)
T ss_dssp HHHHHHHHHHHCCCE-EECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEEC--SSCEEE---EEEESCCHHH
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEE--CCeEee---eEEEechhhH
Confidence 344555666689998 5555444443333 221 11 136799999999999999986 332211 2236789877
Q ss_pred HHHHH
Q 005099 301 FDKRI 305 (714)
Q Consensus 301 ~D~~l 305 (714)
+.+.+
T Consensus 166 l~e~f 170 (315)
T 3mdq_A 166 LIDRF 170 (315)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 76654
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=89.18 E-value=0.26 Score=54.51 Aligned_cols=71 Identities=8% Similarity=-0.005 Sum_probs=54.0
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhh-cCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 375 EELCSDLLDR--LKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM-TGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 375 e~l~~~l~~~--i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~-fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
..++.-+++. +.-.++.+++...- .+.|.++||.++.|...+.+.+. ||.++.++.. .|+.|+|||+.|+.
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~~-~e~~alGAA~lA~~ 435 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRPDCAVYTANA-HNDVSFGALRLIDP 435 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHSTTSEEEEESS-CCCTTGGGHHHHCT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcCCCeEEEcCC-CchHHHHHHHHhCc
Confidence 4555666653 55555666665431 27899999999999999999999 9998876644 56889999999986
|
| >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A | Back alignment and structure |
|---|
Probab=88.56 E-value=1.8 Score=43.29 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.4
Q ss_pred eEEEEEcCccceEEEEEECCe
Q 005099 77 KVVGIDLGTTNSAVAAMEGGK 97 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~ 97 (714)
+.+.||.|+|+++.+++++++
T Consensus 4 M~L~IDIGNT~ik~gl~~~~~ 24 (249)
T 3bex_A 4 MYLLVDVGNTHSVFSITEDGK 24 (249)
T ss_dssp EEEEEEECSSEEEEEEESSSS
T ss_pred eEEEEEECCCeEEEEEEECCE
Confidence 589999999999999987653
|
| >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=86.84 E-value=29 Score=35.19 Aligned_cols=65 Identities=20% Similarity=0.077 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCC--chhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTR--IPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssr--ip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
.+..++++..+.+-..+...-. . +...|+|.||.+. .|.+.+.+++.+ ..|+.+.++||+++|..
T Consensus 227 ~A~~i~~~~~~~L~~~l~~l~~-~-~p~~VvlgGgv~~~~~~~l~~~l~~~i-------~~~~~~~~~GAa~la~~ 293 (305)
T 1zc6_A 227 EADALLRQAGEDAWAIARALDP-Q-DELPVALCGGLGQALRDWLPPGFRQRL-------VAPQGDSAQGALLLLQR 293 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-T-CCSCEEEESHHHHHTGGGSCHHHHHHC-------CCCSSCHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-C-CCCeEEEECCchHhHHHHHHHHHHhhc-------cCCCCCHHHHHHHHHhh
Confidence 3445556665556555555432 2 6678999999864 567777777653 22567889999998753
|
| >3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A* | Back alignment and structure |
|---|
Probab=86.11 E-value=4.2 Score=45.51 Aligned_cols=67 Identities=21% Similarity=0.186 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCC-CCCcC-CCChhHHHhHHHHHHhHhhCC
Q 005099 383 DRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGR-EPNVT-VNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 383 ~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~-~~~~~-~np~eaVA~GAa~~aa~ls~~ 454 (714)
+-+.+.+..+.+..+ ++.|+|.||.+....+++.|.+..+. .+..+ .--|.++++|+|+++....+.
T Consensus 293 ~~L~~~~~~a~~~tg-----~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~aiGqA~~a~~~~g~ 361 (576)
T 3ven_A 293 RAVFGLADSVLARTG-----ERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVSLGAAAAVAVELGD 361 (576)
T ss_dssp HHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcC-----CCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHHHHHHHHHHHHcCC
Confidence 344455555556544 67999999999999999999876553 33222 244899999999998876554
|
| >3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X* | Back alignment and structure |
|---|
Probab=85.16 E-value=8.7 Score=42.13 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCCC--eeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEEE
Q 005099 221 NDSQRTATKDAGRIAGLD--VLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEV 280 (714)
Q Consensus 221 ~~~qR~~l~~Aa~~AGl~--~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~~ 280 (714)
...-.+.+++|.+.-|++ ++.++|+.+|++++..+.. ...++-+=+|-||=-+.+...
T Consensus 184 G~dv~~~L~~al~r~gl~v~v~aivNDtv~tll~~~y~~--~~~~iglIlGTG~N~~y~e~~ 243 (485)
T 3o8m_A 184 GHDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTD--PQTKMGIIIGTGVNGAYYDVV 243 (485)
T ss_dssp TSBHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHC--TTEEEEEEESSSEEEEEEEEG
T ss_pred CccHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHhhCC--CCcEEEEEEecCcceEEEeec
Confidence 456677899999888886 4789999999999876653 456666668888654444443
|
| >3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A* | Back alignment and structure |
|---|
Probab=83.74 E-value=1.6 Score=46.04 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcC-CCCC----cCCCChhHHHhHHHHHHhH
Q 005099 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTG-REPN----VTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 376 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg-~~~~----~~~np~eaVA~GAa~~aa~ 450 (714)
++..-+.+=+...|.+.++... ..++.|+++||+++.|.+.+.|++.++ .++. ..++|+.-=|..-|++|..
T Consensus 260 Dv~ATLt~~TA~sIa~~~~~~~---~~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~~Gi~~d~~EA~aFA~LA~~ 336 (371)
T 3qbx_A 260 DIQATLLELSARSISESLLDAQ---PDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHR 336 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---TTCCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGGGTCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCCceEEEECCccCcHHHHHHHHHhCCCCEEeCHHHcCCChhHHHHHHHHHHHHH
Confidence 4445555555556666665533 246789999999999999999999984 3332 2345655445556676664
|
| >2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A | Back alignment and structure |
|---|
Probab=82.99 E-value=2.7 Score=45.97 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCC--eeEEechhHHHHHHcccccCCCceEEEEEeCCcceEEEEEE
Q 005099 223 SQRTATKDAGRIAGLD--VLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLE 279 (714)
Q Consensus 223 ~qR~~l~~Aa~~AGl~--~~~li~Ep~AAAlay~~~~~~~~~vLVvD~GgGT~Dvsv~~ 279 (714)
.-++.++++....|++ ++.++|+..|++++-.+ ....+++.+=+|-|+=-.-+..
T Consensus 164 ~v~~~L~~~l~r~glpv~vval~NDa~~tll~e~~--~~~~~~iglilGTGvgg~~i~~ 220 (457)
T 2yhx_A 164 KLISAMXNAXFPAGDXXXSVADIXDSHGILXXVNY--TDAXIKMGIIFGSGVNAAYWCD 220 (457)
T ss_dssp SBHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHH--HCTTEEEEEEESSSEEEEEEEC
T ss_pred HHHHHHHHhHhhcCCcceeEEEEecchhhccchhh--cCCccEEEEEECcEEEEEEEEC
Confidence 4566777887666665 57999999999998766 2345677777888854434443
|
| >1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=82.75 E-value=16 Score=36.32 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=28.2
Q ss_pred cCCCeeEEechhHHHHHHcccc---cCCCceEEEEEeCCcceEEEEE
Q 005099 235 AGLDVLRIINEPTAASLAYGFE---KKNNETILVFDLGGGTFDVSVL 278 (714)
Q Consensus 235 AGl~~~~li~Ep~AAAlay~~~---~~~~~~vLVvD~GgGT~Dvsv~ 278 (714)
.|++ +.+.|+..|||++.... ......++++-+|.| +-..++
T Consensus 114 ~~~p-V~v~NDanaaalaE~~~g~~~~~~~~~~~l~~GtG-IG~giv 158 (267)
T 1woq_A 114 LGRP-VEVINDADAAGLAEARYGAGAGVKGTVLVITLGTG-IGSAFI 158 (267)
T ss_dssp HTSC-EEEEEHHHHHHHHHHHHSTTTTCCSEEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEeehhHHHHHHHHHhCCCCCCCCcEEEEEECcc-eEEEEE
Confidence 3676 58999999999985432 211235777888877 555554
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=82.59 E-value=10 Score=40.08 Aligned_cols=66 Identities=12% Similarity=0.297 Sum_probs=40.8
Q ss_pred CCcCeEEEEecCCCCHH----------------HHHHHHHHHHHcCCCeeEEechhHHHHHHcccc-cCCCceEEEEEeC
Q 005099 207 DSVTKAVVTVPAYFNDS----------------QRTATKDAGRIAGLDVLRIINEPTAASLAYGFE-KKNNETILVFDLG 269 (714)
Q Consensus 207 ~~v~~~VITVPa~f~~~----------------qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~-~~~~~~vLVvD~G 269 (714)
.++..+.|++|...+.. -++.+.+. .|++ +.+.|+..|||++.... ... .+++++-+|
T Consensus 147 ~~i~gigi~~pG~vd~~~g~v~~~~~l~w~~~~l~~~l~~~---~~~p-V~v~NDanaaalaE~~~g~~~-~~~v~l~~G 221 (380)
T 2hoe_A 147 SKLSALTVAAPGPIDTERGIIIDPRNFPLSQIPLANLLKEK---YGIE-VWVENDADMGAVGEKWYTKRD-DSFAWILTG 221 (380)
T ss_dssp CCCCEEEEEESSCEETTTTEECCCSSCTTBTSCHHHHHHHH---HCSE-EEEEEHHHHHHHHHHHHTTCC-SCEEEEEES
T ss_pred CcEEEEEEEeeccEECCCCEEeccCCCCCcCCChHHHHHHH---hCCC-EEEechHHHHHHHHHHhCCCC-CcEEEEEeC
Confidence 44567778887754321 12333332 3665 58999999999985432 122 678888888
Q ss_pred CcceEEEEE
Q 005099 270 GGTFDVSVL 278 (714)
Q Consensus 270 gGT~Dvsv~ 278 (714)
.| +-..++
T Consensus 222 tG-iG~giv 229 (380)
T 2hoe_A 222 KG-IGAGII 229 (380)
T ss_dssp SS-CEEEEE
T ss_pred Cc-eEEEEE
Confidence 87 344554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 714 | ||||
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 6e-83 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 5e-73 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 5e-72 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 6e-68 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 1e-67 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 2e-51 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 3e-45 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 1e-30 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 4e-30 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 1e-28 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 7e-28 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 3e-21 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 3e-19 | |
| d1huxa_ | 259 | c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase comp | 7e-04 |
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 259 bits (662), Expect = 6e-83
Identities = 111/196 (56%), Positives = 148/196 (75%), Gaps = 4/196 (2%)
Query: 260 NETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315
N TI V+DLGGGTFD+S++E+ G+ FEVL+T+GDTHLGG+DFD R++++L FK+
Sbjct: 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKK 61
Query: 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFE 375
D+GIDL D A+QRL E AEKAK+ELSS QT+++LP+ITA A GPKH++ +TR K E
Sbjct: 62 DQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLE 121
Query: 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVN 435
L DL++R ++ +L+DA LS D+D+VILVGG TR+P VQ+ V + G+EP VN
Sbjct: 122 SLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN 181
Query: 436 PDEVVALGAAVQAGVL 451
PDE VA+GAAVQ GVL
Sbjct: 182 PDEAVAIGAAVQGGVL 197
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 232 bits (593), Expect = 5e-73
Identities = 103/184 (55%), Positives = 140/184 (76%), Gaps = 4/184 (2%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
K++GIDLGTTNS VA M+G P ++ NAEG RTTPS++AYT++G+ LVGQ AKRQAV NP
Sbjct: 1 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 60
Query: 137 ENTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVL 194
+NT F++KR IGR+ EV + + ++++ +NG+ +E G++ A +ISA+VL
Sbjct: 61 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEVL 118
Query: 195 RKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYG 254
+K+ A +L + VT+AV+TVPAYFND+QR ATKDAGRIAGL+V RIINEPTAA+LAYG
Sbjct: 119 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 178
Query: 255 FEKK 258
+K
Sbjct: 179 LDKG 182
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 230 bits (587), Expect = 5e-72
Identities = 95/193 (49%), Positives = 133/193 (68%), Gaps = 5/193 (2%)
Query: 261 ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGID 320
+L+FDLGGGTFDVS+L + DG+FEV ST+GDTHLGG+DFD R+V+ + FKR D
Sbjct: 5 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKD 64
Query: 321 LLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSD 380
+ ++K+A++RL E+AK LSS TQ +I + + D T++TR +FEEL +D
Sbjct: 65 ISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGID----FYTSITRARFEELNAD 120
Query: 381 LLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKM-TGREPNVTVNPDEV 439
L PVE +LRDAKL + +++LVGGSTRIP +Q+L++ G+E N ++NPDE
Sbjct: 121 LFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEA 180
Query: 440 VALGAAVQAGVLA 452
VA GAAVQA +L+
Sbjct: 181 VAYGAAVQAAILS 193
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 218 bits (556), Expect = 6e-68
Identities = 92/159 (57%), Positives = 120/159 (75%), Gaps = 1/159 (0%)
Query: 452 AGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQ 511
+ +V D++LLDVTPLSLG+ET GGVMT +I RNTT+PT +++ F+T +D Q V I V +
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 512 GEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITIT 571
GER +DN LG F L GIPPAPRGVPQIEV FDIDANGIL+VSAVDK TGK+ ITIT
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 572 G-ASTLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQAD 609
L ++++RMVQEAE++ ED+++RD + +KN +
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 218 bits (556), Expect = 1e-67
Identities = 97/185 (52%), Positives = 121/185 (65%), Gaps = 4/185 (2%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 136
VGIDLG+T S V + GK I+ N +G RTTPS VA+T + +RL+G AK Q +NP
Sbjct: 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNP 60
Query: 137 ENTFFSVKRFIGRKM--VEVDEESKQVSYRVVRDEN-GNVKLECPAIGKQFAAEEISAQV 193
NT F KR IGR+ V + K + VV D V++E K F EE+S+ V
Sbjct: 61 TNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMV 120
Query: 194 LRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAY 253
L K+ + A +L +VT AVVTVPAYFNDSQR ATKDAG IAGL+VLRIINEPTAA++AY
Sbjct: 121 LTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 180
Query: 254 GFEKK 258
G +KK
Sbjct: 181 GLDKK 185
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 172 bits (436), Expect = 2e-51
Identities = 80/117 (68%), Positives = 97/117 (82%)
Query: 458 IVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFV 517
++LLDVTPLSLG+ET+GGVMT +I +NTT+PT S+VFSTA D Q++V I+VLQGER+
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 518 RDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGAS 574
DNKSLG F LDGI PAPRG+PQIEV FDIDA+GIL VSA DK +GK+Q ITI +S
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASS 117
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 155 bits (392), Expect = 3e-45
Identities = 58/114 (50%), Positives = 84/114 (73%)
Query: 461 LDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDN 520
+DV PLSLGLET+GG++ K+IPRNTT+P ++++ F+T DGQT++ I+V+QGERE V+D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 521 KSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGAS 574
+SL F L GIP P G I V F +DA+G+LSV+A++K TG + I + +
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSY 114
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 117 bits (293), Expect = 1e-30
Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 17/189 (8%)
Query: 263 ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLL 322
+V D+GGGT +V+V+ +G V + GD+ D+ IV ++ ++ G
Sbjct: 9 NMVVDIGGGTTEVAVISLGSIVT-----WESIRIAGDEMDEAIVQYVRETYRVAIGERTA 63
Query: 323 KDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLL 382
+ + +++ ++++ ++ TL + E ++
Sbjct: 64 ERVKIEIGNVFPSKENDELETTVSGIDL---------STGLPRKLTLKGGEVREALRSVV 114
Query: 383 DRLKTPVETSLRDAKLSFK---DLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEV 439
+ V T+L + L GG + + + L++K TG + P
Sbjct: 115 VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTA 174
Query: 440 VALGAAVQA 448
VA GA +
Sbjct: 175 VAKGAGMVL 183
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 113 bits (283), Expect = 4e-30
Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 43/176 (24%)
Query: 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAY-TKNGDRLVGQIAKRQAVVN 135
K +GIDLGT N+ V G IV N PSV+A + G+ L + + +
Sbjct: 1 KDIGIDLGTANTLVFLRGKG---IVVN------EPSVIAIDSTTGEILKVGLEAKNMIGK 51
Query: 136 PENTFFSVKRFIGRKMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLR 195
T +++ + + ++ +LR
Sbjct: 52 TPATIKAIRPMRDGVIAD---------------------------------YTVALVMLR 78
Query: 196 KLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASL 251
++ A +N + V+ VP D +R A DAG AG + +I EP AA++
Sbjct: 79 YFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI 134
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 110 bits (275), Expect = 1e-28
Identities = 28/196 (14%), Positives = 59/196 (30%), Gaps = 38/196 (19%)
Query: 256 EKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKR 315
E +++L+ DLGG T D+S + + + GD+ LG + D L+ +
Sbjct: 2 ELDELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLARTK 59
Query: 316 DEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFE 375
I ++ +
Sbjct: 60 GSSYLA-------------------------------DDIIIHRKDNNYLKQRINDENKI 88
Query: 376 ELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPN---V 432
+ ++ ++ +E + + F V+++GG + + + VKK T
Sbjct: 89 SIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFK 146
Query: 433 TVNPDEVVALGAAVQA 448
T N + G +
Sbjct: 147 TNNSQYDLVNGMYLIG 162
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 105 bits (264), Expect = 7e-28
Identities = 33/95 (34%), Positives = 57/95 (60%)
Query: 576 LPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVE 635
L DE+Q+MV++AE A+ D++ + + T+NQ D +++ T KQ++E GDK+PA+ K +E
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 636 GKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQS 670
L L+ A+ A++ M L Q +L +
Sbjct: 61 SALTALETALKGEDKAAIEAKMQELAQVSQKLMEI 95
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 86.9 bits (215), Expect = 3e-21
Identities = 14/99 (14%), Positives = 40/99 (40%)
Query: 576 LPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVE 635
L + E+ M++++ +A++D + R + K +A V+ L + A + ++
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 636 GKLKELKDAIAEGSTQAMKDTMAALNQEVMQLGQSLYNQ 674
L + A++ + ++++ +Q
Sbjct: 61 DAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQ 99
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 83.3 bits (205), Expect = 3e-19
Identities = 20/189 (10%), Positives = 53/189 (28%), Gaps = 39/189 (20%)
Query: 257 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRD 316
++ +V D+G T DV + + D V+ S +G D + +
Sbjct: 2 EQQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKI------- 53
Query: 317 EGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEE 376
+ + ++ E+
Sbjct: 54 --------------------AKETGFVVPFDLAQEALSHPVMFRQKQVGGPEVSGPILED 93
Query: 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTV-- 434
L + +++ ++ + + + +I VGG + + + + +++
Sbjct: 94 LANRIIENIRLNLRGEV-------DRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPE 144
Query: 435 NPDEVVALG 443
+ ALG
Sbjct: 145 DLQFANALG 153
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Score = 39.8 bits (92), Expect = 7e-04
Identities = 40/284 (14%), Positives = 88/284 (30%), Gaps = 47/284 (16%)
Query: 165 VVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQ 224
++ + + + ++ A+ + +++++A + +
Sbjct: 17 IILKDGKEIVAK--SLVAVGTGTSGPARSISEVLENAHMKKE--------------DMAF 60
Query: 225 RTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGV 284
AT + ++E + A G V D+GG V +E G
Sbjct: 61 TLATGYGRNSLEGIADKQMSELSCH--AMGASFIWPNVHTVIDIGGQDVKVIHVENGTMT 118
Query: 285 FEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMELSS 344
++ G R +D +A+ + L L + K + +SS
Sbjct: 119 NFQMNDKCAAGTG------RFLDVMANILEVK--------VSDLAELGAKSTKR-VAISS 163
Query: 345 LTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLD 404
I+ + G ID + + S ++ +
Sbjct: 164 TCTVFAESEVISQLSKGTDKID--IIAGIHRSVASRVIGLANR------------VGIVK 209
Query: 405 EVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQA 448
+V++ GG + V+ +++ G E + ALGAA+ A
Sbjct: 210 DVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYA 253
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 714 | |||
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.91 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.87 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.85 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.51 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.49 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.45 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 99.39 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.37 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 99.26 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 98.65 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.86 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.8 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 97.55 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.32 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.29 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 96.87 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 96.37 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 95.93 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 95.77 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 95.67 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 95.51 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 94.82 | |
| d2fsja2 | 164 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 92.98 | |
| d1sz2a1 | 319 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 92.53 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 91.45 | |
| d2ch5a2 | 117 | N-acetylglucosamine kinase, NAGK {Human (Homo sapi | 90.61 | |
| d2zgya1 | 157 | Plasmid segregation protein ParM {Escherichia coli | 87.9 | |
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 82.94 | |
| d1u6za3 | 177 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 81.0 |
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=9.8e-39 Score=314.70 Aligned_cols=192 Identities=57% Similarity=0.937 Sum_probs=182.2
Q ss_pred ceEEEEEeCCcceEEEEEEEc----CceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHH
Q 005099 261 ETILVFDLGGGTFDVSVLEVG----DGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAE 336 (714)
Q Consensus 261 ~~vLVvD~GgGT~Dvsv~~~~----~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e 336 (714)
++||||||||||||+|++++. ++.++++++.++..+||++||+.|++|+.++|+++++.++..+++++.+|+++||
T Consensus 3 ~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~e 82 (198)
T d1dkgd2 3 RTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAE 82 (198)
T ss_dssp EEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHH
Confidence 589999999999999999997 4578999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCch
Q 005099 337 KAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIP 416 (714)
Q Consensus 337 ~aK~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip 416 (714)
++|+.||.+.++++++|.+..+..+..+++++|||++|+++++|+++++.++|+++|+++++++.+|+.|+|+||+||+|
T Consensus 83 ~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~p 162 (198)
T d1dkgd2 83 KAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMP 162 (198)
T ss_dssp HHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSH
T ss_pred HHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCCH
Confidence 99999999999999999888776666788999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhh
Q 005099 417 AVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLA 452 (714)
Q Consensus 417 ~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls 452 (714)
+|++.|+++|+.++..+.||++|||+|||++|++||
T Consensus 163 ~l~~~i~~~f~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 163 MVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999875
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.4e-37 Score=303.82 Aligned_cols=189 Identities=49% Similarity=0.802 Sum_probs=180.1
Q ss_pred CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhh
Q 005099 260 NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAK 339 (714)
Q Consensus 260 ~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK 339 (714)
+++||||||||||||+|++++.++.++++++.++..+||.+||+.|++|+.++|.++++.++..+++++.+|+.+||++|
T Consensus 4 e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K 83 (193)
T d1bupa2 4 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAK 83 (193)
T ss_dssp CEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred hhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHH
Q 005099 340 MELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQ 419 (714)
Q Consensus 340 ~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~ 419 (714)
+.||.+.++.+.++.+..+ .++.++|||++|+++++|+++++.++++++|+++++.+.+|+.|+||||+|++|+|+
T Consensus 84 ~~ls~~~~~~~~~~~~~~~----~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~ 159 (193)
T d1bupa2 84 RTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQ 159 (193)
T ss_dssp HHHTTSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHH
T ss_pred hccCCCceEEEEEecccCC----CccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHH
Confidence 9999999999999887765 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC-CCCCcCCCChhHHHhHHHHHHhHhh
Q 005099 420 ELVKKMTG-REPNVTVNPDEVVALGAAVQAGVLA 452 (714)
Q Consensus 420 ~~l~~~fg-~~~~~~~np~eaVA~GAa~~aa~ls 452 (714)
+.|+++|+ .++..+.||++|||+|||++|++||
T Consensus 160 ~~i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 160 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHHHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 99999994 6778889999999999999999875
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=1e-37 Score=303.69 Aligned_cols=179 Identities=56% Similarity=0.941 Sum_probs=169.0
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh--hh
Q 005099 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE--VD 155 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~--v~ 155 (714)
|||||||||||+||++.+|+++++.|++|++.+||+|+|.+++++++|..|..+...+|.++++++|||||+.+.+ ++
T Consensus 2 VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~~ 81 (183)
T d1dkgd1 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQ 81 (183)
T ss_dssp CCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHH
T ss_pred EEEEEcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHHH
Confidence 7999999999999999999999999999999999999999888999999999999999999999999999998764 77
Q ss_pred hhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHc
Q 005099 156 EESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIA 235 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~A 235 (714)
.....+||+++..+++...+... ++.++|++|++++|++|++.++++++.++.++|||||++|++.||++|++||++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~A 159 (183)
T d1dkgd1 82 RDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIA 159 (183)
T ss_dssp HHTTTCSSEEEECSSSBEEEEET--TEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHT
T ss_pred hhhhcCCEEEEEcCCCcEEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 78888999999988888887765 6789999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEechhHHHHHHcccccC
Q 005099 236 GLDVLRIINEPTAASLAYGFEKK 258 (714)
Q Consensus 236 Gl~~~~li~Ep~AAAlay~~~~~ 258 (714)
|+++++||+||+|||++|++++.
T Consensus 160 G~~~~~li~EP~AAAl~Ygl~k~ 182 (183)
T d1dkgd1 160 GLEVKRIINEPTAAALAYGLDKG 182 (183)
T ss_dssp TCEESCCCBHHHHHHHHHTCCC-
T ss_pred CCCEEEEecCHHHHHHHhcccCC
Confidence 99999999999999999998753
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3e-37 Score=300.97 Aligned_cols=182 Identities=53% Similarity=0.807 Sum_probs=166.2
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchh--
Q 005099 76 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVE-- 153 (714)
Q Consensus 76 ~~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~-- 153 (714)
+.|||||||||||+||++++|+++++.|.+|++++||+|+|.++ ++++|..|+.+...+|.++++++|||||+.+.+
T Consensus 1 g~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~~~-~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~ 79 (185)
T d1bupa1 1 GPAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAV 79 (185)
T ss_dssp CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-CEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHH
T ss_pred CCEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEEEECCC-cEEEeechHHHhhcCcccchhHHHHHhCCCCccHH
Confidence 46999999999999999999999999999999999999999866 899999999999999999999999999999886
Q ss_pred hhhhhccceeEEEEcCCC-cEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHH
Q 005099 154 VDEESKQVSYRVVRDENG-NVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAG 232 (714)
Q Consensus 154 v~~~~~~~~~~v~~~~~g-~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa 232 (714)
++...+.+|+.+..+... ...+...+..+.++|++|++++|++|++.++++++.++.++|||||++|++.||++|++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa 159 (185)
T d1bupa1 80 VQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 159 (185)
T ss_dssp HHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHH
Confidence 667778899988875432 3445566667789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhHHHHHHcccccC
Q 005099 233 RIAGLDVLRIINEPTAASLAYGFEKK 258 (714)
Q Consensus 233 ~~AGl~~~~li~Ep~AAAlay~~~~~ 258 (714)
++|||++++||+||+|||++|+++++
T Consensus 160 ~~AGl~~~~li~EP~AAAl~Ygldkk 185 (185)
T d1bupa1 160 TIAGLNVLRIINEPTAAAIAYGLDKK 185 (185)
T ss_dssp HHTTCEEEEEEEHHHHHHHHTTTTSC
T ss_pred HHcCCCeEEEEcCHHHHHHHhcccCC
Confidence 99999999999999999999998753
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=9.8e-34 Score=265.50 Aligned_cols=158 Identities=58% Similarity=0.941 Sum_probs=153.0
Q ss_pred hCCCCCcEEEeeccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCC
Q 005099 452 AGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGI 531 (714)
Q Consensus 452 s~~~~~~~~~dv~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~ 531 (714)
|+++++++++||+|+||||++.+|.|.+|||||++||+++++.|+|..|+|+.+.|.|||||+..+.+|.+||+|.|+++
T Consensus 1 ~~~v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~i 80 (159)
T d1yuwa1 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGI 80 (159)
T ss_dssp CCCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECC
T ss_pred CCccceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeEEEEEecCCceEEEEEEEcCCCceeeeEEccC-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 005099 532 PPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA-STLPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQAD 609 (714)
Q Consensus 532 ~~~~~g~~~i~v~f~id~~gil~v~a~~~~t~~~~~i~i~~~-~~l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE 609 (714)
||.|+|.++|+|+|++|.||+|+|+|.++.||++.+++|... +.|+++|+++|++++++++.+|++.|++.++||+||
T Consensus 81 p~~~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i~eae~~~~eDe~~r~~ieakn~lE 159 (159)
T d1yuwa1 81 PPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159 (159)
T ss_dssp CCCSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECS
T ss_pred CcCCCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999987 679999999999999999999999999999999886
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.2e-25 Score=197.59 Aligned_cols=116 Identities=68% Similarity=1.041 Sum_probs=112.3
Q ss_pred cEEEeeccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCC
Q 005099 458 IVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRG 537 (714)
Q Consensus 458 ~~~~dv~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g 537 (714)
+++.|++|+||||++.+|.|.+|||||++||+++++.|+|..|+|+.+.|+|||||+..+.+|.+||+|.|+++|+.|+|
T Consensus 1 i~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G 80 (118)
T d1dkza2 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (118)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTT
T ss_pred CEEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEecCCceEEEEEEEcCCCceeeeEEccC
Q 005099 538 VPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 573 (714)
Q Consensus 538 ~~~i~v~f~id~~gil~v~a~~~~t~~~~~i~i~~~ 573 (714)
.++|+|+|++|.||+|+|+|.|+.||++.+++|...
T Consensus 81 ~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~ 116 (118)
T d1dkza2 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS 116 (118)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTT
T ss_pred CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcC
Confidence 999999999999999999999999999999998765
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=7.9e-25 Score=193.26 Aligned_cols=113 Identities=51% Similarity=0.892 Sum_probs=110.4
Q ss_pred EeeccCCcceeeeCCeeEEEEeCCCccCCCccceeeecccCCcceeeeeecccccccccCceeeEEEEeCCCCCCCCCCe
Q 005099 461 LDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ 540 (714)
Q Consensus 461 ~dv~~~slgi~~~~~~~~~ii~~~~~iP~~~~~~f~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~ 540 (714)
.||+|+||||++.+|.|.+|||||++||+++++.|++..|+|+.+.|+|||||+..+.+|..||.|.|.++|+.|+|.++
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCceEEEEEEEcCCCceeeeEEccC
Q 005099 541 IEVKFDIDANGILSVSAVDKGTGKKQDITITGA 573 (714)
Q Consensus 541 i~v~f~id~~gil~v~a~~~~t~~~~~i~i~~~ 573 (714)
|+|+|++|.||+|+|+|.|+.||++.+++|..+
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~ 113 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS 113 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCC
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCC
Confidence 999999999999999999999999999999875
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=2.3e-22 Score=185.06 Aligned_cols=133 Identities=32% Similarity=0.408 Sum_probs=101.0
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEec-CCCEE-ecHHHHHhhhhCCCchHHHHhHhhCCCchhhh
Q 005099 78 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK-NGDRL-VGQIAKRQAVVNPENTFFSVKRFIGRKMVEVD 155 (714)
Q Consensus 78 vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~-~~~~~-vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~ 155 (714)
.||||||||||+||+..+| .++ + .|+.+++.. .+..+ +|..+......+|.++ ...|+
T Consensus 2 ~iGIDlGTtns~va~~~~~--~v~-~------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~-~~~k~---------- 61 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGKG--IVV-N------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATI-KAIRP---------- 61 (137)
T ss_dssp EEEEEECSSEEEEEETTTE--EEE-E------EESCEEEETTTCCEEEESHHHHTTTTCCCTTE-EEECC----------
T ss_pred eEEEEcChhhEEEEEeCCC--EEe-e------cCCcceEecCCCeEEEEehHHhhhhhhccccc-eeEEe----------
Confidence 6999999999999875433 333 2 366777654 33444 6666654433333321 11111
Q ss_pred hhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCcCeEEEEecCCCCHHHHHHHHHHHHHc
Q 005099 156 EESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSVTKAVVTVPAYFNDSQRTATKDAGRIA 235 (714)
Q Consensus 156 ~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v~~~VITVPa~f~~~qR~~l~~Aa~~A 235 (714)
..+..+.+.++..+++.+++..++.+.+..+.++|||||++|++.||+++++||+.|
T Consensus 62 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~A 118 (137)
T d1jcea1 62 -----------------------MRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEA 118 (137)
T ss_dssp -----------------------EETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred -----------------------ccCCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHc
Confidence 114456788899999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEechhHHHHHHc
Q 005099 236 GLDVLRIINEPTAASLAY 253 (714)
Q Consensus 236 Gl~~~~li~Ep~AAAlay 253 (714)
||++++||+||+|||+.+
T Consensus 119 Gl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 119 GASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp TCSEEEEEEHHHHHHHHT
T ss_pred CCCEEEEeCCHHHHHhCC
Confidence 999999999999999864
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=2.5e-22 Score=195.63 Aligned_cols=180 Identities=21% Similarity=0.259 Sum_probs=130.5
Q ss_pred cCCCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHH
Q 005099 257 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAE 336 (714)
Q Consensus 257 ~~~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e 336 (714)
..++..+|||||||||||+|+++..+..+ .+....||.+++..+..++...+........ .........
T Consensus 3 ~~~~~gvlV~DiGGGT~Dvsi~~~g~~~~-----~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 71 (196)
T d1jcea2 3 VEEPSGNMVVDIGGGTTEVAVISLGSIVT-----WESIRIAGDEMDEAIVQYVRETYRVAIGERT------AERVKIEIG 71 (196)
T ss_dssp TTSSSCEEEEEECSSCEEEEEEETTEEEE-----EEEESCSHHHHHHHHHHHHHHHHCEECCHHH------HHHHHHHHC
T ss_pred CCCCCceEEEEcCCCcEEEEEEEcCCEeE-----EeeecCCCcccccchhhhhhhhhcccccchh------HHHHHHHHh
Confidence 34578999999999999999998766444 4456899999999999999888764443111 111111111
Q ss_pred Hhhhhc-CCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCEEEEEcCC
Q 005099 337 KAKMEL-SSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFK---DLDEVILVGGS 412 (714)
Q Consensus 337 ~aK~~L-s~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~---~i~~VvLvGGs 412 (714)
.++... .......+..+....+ ......+++.++++++.++++++...+.++++.+..... .++.|+||||+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGs 147 (196)
T d1jcea2 72 NVFPSKENDELETTVSGIDLSTG----LPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGG 147 (196)
T ss_dssp BCSCCHHHHHCEEEEEEEETTTT----EEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGG
T ss_pred hhhhhhhccccceeeeeeeccCC----CccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCch
Confidence 110000 0011122222222222 566788999999999999999999999999998654321 24679999999
Q ss_pred CCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHh
Q 005099 413 TRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVL 451 (714)
Q Consensus 413 srip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~l 451 (714)
|++|+|+++|++.||.++....||++|||+|||+++..+
T Consensus 148 S~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~~~~~ 186 (196)
T d1jcea2 148 SLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKV 186 (196)
T ss_dssp GCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCH
T ss_pred hcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHHHHCH
Confidence 999999999999999999999999999999999987554
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=6.9e-15 Score=138.13 Aligned_cols=155 Identities=20% Similarity=0.254 Sum_probs=102.8
Q ss_pred CCceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHh
Q 005099 259 NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKA 338 (714)
Q Consensus 259 ~~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~a 338 (714)
+..++||+|+||||||+++++ ++...+..+.++..+||.+|++.+.+++...+.... ......+ +
T Consensus 5 e~~~ilViDiGggTtDi~v~~--~~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~~-------~~~~~~~------~ 69 (163)
T d2zgya2 5 ELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGS-------SYLADDI------I 69 (163)
T ss_dssp TTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGGG-------HHHHHHH------H
T ss_pred CCCCEEEEECCCCcEEEEEEc--CCeEEEEEeeccccccchHHHHHHHHhhHHhhchhh-------hhhHHHH------H
Confidence 457899999999999999976 444555666777899999999999998876544221 0000000 1
Q ss_pred hhhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhH
Q 005099 339 KMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAV 418 (714)
Q Consensus 339 K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v 418 (714)
+.. ....... ........++.+++++.+.++.+.+.+.+.+. ...+++.|+|+||+|+ .+
T Consensus 70 ~~~---~~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~~----~~~~~~~iil~GGGs~--ll 129 (163)
T d2zgya2 70 IHR---KDNNYLK-----------QRINDENKISIVTEAMNEALRKLEQRVLNTLN----EFSGYTHVMVIGGGAE--LI 129 (163)
T ss_dssp HTT---TCHHHHH-----------HHSSSSCTHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCEEEEESTTHH--HH
T ss_pred Hhh---ccccccc-----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cccccceEEEECchHH--HH
Confidence 000 0000000 00111234556666666666666666655554 3467899999999996 59
Q ss_pred HHHHHhhcCC---CCCcCCCChhHHHhHHHHHH
Q 005099 419 QELVKKMTGR---EPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 419 ~~~l~~~fg~---~~~~~~np~eaVA~GAa~~a 448 (714)
++.|++.|+. .+....||..|+|+|+.++|
T Consensus 130 ~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 130 CDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp HHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 9999999964 35677899999999999876
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=5.2e-14 Score=135.86 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=113.4
Q ss_pred CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhh
Q 005099 260 NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAK 339 (714)
Q Consensus 260 ~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK 339 (714)
+..++|+|+|+||+|++++. ++.+... ....+||++||+.|...+.-. ..+||++|
T Consensus 6 ~~Gv~vvDiG~~tt~i~i~~--~G~l~~~---~~i~~GG~~iT~~Ia~~l~i~-------------------~~~AE~iK 61 (191)
T d1e4ft2 6 DRGVVVVNLGYNFTGLIAYK--NGVPIKI---SYVPVGMKHVIKDVSAVLDTS-------------------FEESERLI 61 (191)
T ss_dssp HHCEEEEEECSSCEEEEEEE--TTEEEEE---EEESCCHHHHHHHHHHHHTCC-------------------HHHHHHHH
T ss_pred hCCEEEEEeCCCcEEEEEEE--CCeEEEE---EEEeeChHHHHHHHHHHhccc-------------------HHHHHHHH
Confidence 35689999999999999977 3433222 225799999999998876421 56899999
Q ss_pred hhcCCCce---eeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CCCCCEEEEEc
Q 005099 340 MELSSLTQ---TNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLS------FKDLDEVILVG 410 (714)
Q Consensus 340 ~~Ls~~~~---~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~------~~~i~~VvLvG 410 (714)
+.+..... ....++....+ ......+++..+.+++++.++++...+++.++..... ...+..|+|+|
T Consensus 62 ~~~g~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtG 137 (191)
T d1e4ft2 62 ITHGNAVYNDLKEEEIQYRGLD----GNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTG 137 (191)
T ss_dssp HHHCCSCCTTCCCCEEEEECTT----SSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEES
T ss_pred hhccccccccccchhccccccc----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEec
Confidence 98754321 11122221111 2334578899999999999999998888888763211 11234699999
Q ss_pred CCCCchhHHHHHHhhcCCCCCc-----------------CCCChhHHHhHHHH
Q 005099 411 GSTRIPAVQELVKKMTGREPNV-----------------TVNPDEVVALGAAV 446 (714)
Q Consensus 411 Gssrip~v~~~l~~~fg~~~~~-----------------~~np~eaVA~GAa~ 446 (714)
|+|++|.+.+.+++.|+.++.. ..+|..++|.|.++
T Consensus 138 Ggs~l~gl~~~l~~~l~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 138 GGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp GGGGSTTHHHHHHHHHCSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred chhhhhhHHHHHHHHHCCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 9999999999999999866421 12688999999875
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=7e-14 Score=115.59 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=68.4
Q ss_pred HHHhhhhHHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 005099 604 TKNQADSVVYQTEKQLKE--LGDKVPAEVKGKVEGKLKELKDAIAEG---STQAMKDTMAALNQEVMQLGQSLYNQPGAG 678 (714)
Q Consensus 604 ~~n~lE~~i~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~ 678 (714)
++|+||+|||.+|+.|.+ +.+++++++++.|.+.|+++++||+++ +.++|++++++|++++.||+.|+|+++|+.
T Consensus 2 ~~N~LEsyiy~~r~~l~d~~~~~kl~~~dk~~i~~~l~e~~~WL~~n~~a~~ee~~~k~~eLe~~~~PI~~k~y~~~g~~ 81 (84)
T d1ud0a_ 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGM 81 (84)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCC
T ss_pred chhhHHHHHHHHHHHhcchhhccccCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 479999999999999975 778999999999999999999999864 689999999999999999999999865543
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.4e-12 Score=110.84 Aligned_cols=95 Identities=35% Similarity=0.506 Sum_probs=91.2
Q ss_pred CChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 005099 576 LPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKD 655 (714)
Q Consensus 576 l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~ 655 (714)
||++||++|++++++++.+|+.+|++++++|++|+|||.+++.|.++.+.++++++..|...|+++.+||..+|.+.++.
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l~e~~~~l~~~~k~~i~~~i~~l~~~l~~~d~~~i~~ 80 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEA 80 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 78999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005099 656 TMAALNQEVMQLGQS 670 (714)
Q Consensus 656 ~~~~l~~~~~~i~~~ 670 (714)
++++|+..+.+|.+.
T Consensus 81 ~~~~L~~~~~~l~e~ 95 (97)
T d1dkza1 81 KMQELAQVSQKLMEI 95 (97)
T ss_dssp HHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888753
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=2.2e-12 Score=112.52 Aligned_cols=100 Identities=14% Similarity=0.262 Sum_probs=96.7
Q ss_pred CChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 005099 576 LPNDEVQRMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAEVKGKVEGKLKELKDAIAEGSTQAMKD 655 (714)
Q Consensus 576 l~~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~lE~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~ 655 (714)
||++||++|++++++++.+|+.+|+.++++|++|++||.+++.|..+.+.++++++..|+..++++..||.++|.+.++.
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~~~d~~~I~~ 80 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQ 80 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 005099 656 TMAALNQEVMQLGQSLYNQP 675 (714)
Q Consensus 656 ~~~~l~~~~~~i~~~~~~~~ 675 (714)
.++.|+..+.++..++|+.+
T Consensus 81 ~~~~L~~~~~~~a~~~m~~~ 100 (112)
T d1u00a1 81 AIKNVDKQTQDFAARRMDQS 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988643
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.26 E-value=6.2e-12 Score=117.41 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=102.9
Q ss_pred CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhh
Q 005099 260 NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAK 339 (714)
Q Consensus 260 ~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK 339 (714)
+.++||+|+||||||++++...+..+ +...+.....|+.+++..|.+++..++..... ....+.+.
T Consensus 5 ~g~~lviDIG~gTtDi~v~~~~~~~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~~~~~~-------------~~~~~~~~ 70 (161)
T d2fsja1 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVP-------------FDLAQEAL 70 (161)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTTEE-CGGGCEEESCCHHHHHHHHHHHHHHHHCCCCC-------------HHHHHHHT
T ss_pred CCcEEEEEcCcCeEEEEEEECCCeEE-EEEEeccHhHHHHHHHHHHHHHHHHHHHhhhh-------------HHHHHHHH
Confidence 57899999999999999998766544 22223346789999999999999887653321 11112221
Q ss_pred hhcCCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHH
Q 005099 340 MELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQ 419 (714)
Q Consensus 340 ~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~ 419 (714)
.. ..... + . ... .++.+.+.++++++.+...+...+... ...++.|+|+||+|.+ ++
T Consensus 71 ~~-----~~~~~------g----~--~~~-~~~~i~~~~~~~~~~i~~~i~~~~~~~---~~~i~~iil~GGga~l--l~ 127 (161)
T d2fsja1 71 SH-----PVMFR------Q----K--QVG-GPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGSNL--IG 127 (161)
T ss_dssp TS-----CEEET------T----E--EEC-SHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTHHH--HG
T ss_pred hc-----ccccc------c----c--cch-HHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccEEEEECCHHHH--HH
Confidence 10 01000 0 1 111 245677777777777777777776542 2568899999999987 78
Q ss_pred HHHHhhcCCCC--CcCCCChhHHHhHHHHHH
Q 005099 420 ELVKKMTGREP--NVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 420 ~~l~~~fg~~~--~~~~np~eaVA~GAa~~a 448 (714)
+.+++.|+... ..+.||+.|+|.|--..|
T Consensus 128 ~~l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 128 DRFEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp GGGGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 88999996543 345799999999987655
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.65 E-value=6.7e-07 Score=88.26 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhH
Q 005099 377 LCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 377 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
++...++.+...+...+... .+++.|++.||.++.+.+++.+++.++.++..+.+|+++.|+|||++|..
T Consensus 186 i~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~ 255 (259)
T d1huxa_ 186 IIAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYK 255 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHH
Confidence 33444444444444444432 34677999999999999999999999999999999999999999999975
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.86 E-value=3.2e-05 Score=76.60 Aligned_cols=172 Identities=18% Similarity=0.166 Sum_probs=96.8
Q ss_pred eEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhh
Q 005099 262 TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKME 341 (714)
Q Consensus 262 ~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~ 341 (714)
+=||+|+|++.++|+-+. +|.. +.....-..+||.++++.|.++|.++-. ......+. ..++..|+.
T Consensus 4 TGlVVDiG~~~T~v~PV~--eG~~-l~~~~~~~~~GG~~lt~~L~~~L~~~~~---~~~~~~~~-------~~~~~~ke~ 70 (258)
T d1k8ka2 4 TGTVIDSGDGVTHVIPVA--EGYV-IGSCIKHIPIAGRDITYFIQQLLRDREV---GIPPEQSL-------ETAKAVKER 70 (258)
T ss_dssp CEEEEEESSSCEEEEEEE--TTEE-CGGGCEEESCSHHHHHHHHHHHHHTTCC---CCCGGGHH-------HHHHHHHHH
T ss_pred EEEEEEcCCCcEEEEEEE--CCEE-chhheEEEeCcHHHHHHHHHHHHHHcCC---CCCcHHHH-------HHHHhHHhh
Confidence 459999999999887664 2321 1111222579999999999998875421 11111111 122333333
Q ss_pred cCCCc-----------------eeeeeccccccCCCCCceeEEEecHHHHHH---HHHHH------HHHHHHHHHHHHHH
Q 005099 342 LSSLT-----------------QTNISLPFITATADGPKHIDTTLTRVKFEE---LCSDL------LDRLKTPVETSLRD 395 (714)
Q Consensus 342 Ls~~~-----------------~~~i~i~~~~~~~~g~~~~~~~itr~efe~---l~~~l------~~~i~~~i~~~L~~ 395 (714)
++... ......+. ........+.+..+.|.- ++.|- ...+.+.|.+++..
T Consensus 71 ~~~v~~d~~~e~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~ 146 (258)
T d1k8ka2 71 YSYVCPDLVKEFNKYDTDGSKWIKQYTGIN----AISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQN 146 (258)
T ss_dssp HCCCCSCHHHHHHHHHHSGGGTCEEEEEEC----TTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHH
T ss_pred hcccccchHHHHHhhccccccccccccccc----ccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHh
Confidence 22110 01111111 111234567776666631 22221 12366777788877
Q ss_pred cCCCCCC--CCEEEEEcCCCCchhHHHHHHhhcC------------------------CCCCcCCCChhHHHhHHHHHHh
Q 005099 396 AKLSFKD--LDEVILVGGSTRIPAVQELVKKMTG------------------------REPNVTVNPDEVVALGAAVQAG 449 (714)
Q Consensus 396 a~~~~~~--i~~VvLvGGssrip~v~~~l~~~fg------------------------~~~~~~~np~eaVA~GAa~~aa 449 (714)
+..+... ...|+|+||+|.+|.+.+.|.+.+. .++..+.++..++=+||+++|.
T Consensus 147 ~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~ 226 (258)
T d1k8ka2 147 CPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 226 (258)
T ss_dssp SCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred ccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHc
Confidence 5433222 3689999999999999998865441 1122233567888899999876
Q ss_pred H
Q 005099 450 V 450 (714)
Q Consensus 450 ~ 450 (714)
.
T Consensus 227 l 227 (258)
T d1k8ka2 227 T 227 (258)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.80 E-value=2.3e-05 Score=75.88 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=95.3
Q ss_pred eEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhh
Q 005099 262 TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKME 341 (714)
Q Consensus 262 ~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~ 341 (714)
+=||+|+|++.+.|+-+. +|.. +........+||+++++.|.++|...... .... .. ....+..|+.
T Consensus 3 TglVVDiG~~~t~v~PV~--eG~~-l~~~~~~~~~GG~~lt~~l~~~L~~~~~~-----~~~~-~~----~~~~~~~ke~ 69 (225)
T d2fxua2 3 TGIVLDSGDGVTHNVPIY--EGYA-LPHAIMRLDLAGRDLTDYLMKILTERGYS-----FVTT-AE----REIVRDIKEK 69 (225)
T ss_dssp SEEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHHHHHHTCC-----CCSH-HH----HHHHHHHHHH
T ss_pred EEEEEEcCCCcEEEEEEE--CCEE-chhceEEEECcHHHHHHHHHHHHhhccCC-----cCCH-HH----HHHHHHHHHH
Confidence 459999999999887664 3321 11222235799999999999998764321 1111 00 1112233333
Q ss_pred cCC----------------CceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHc
Q 005099 342 LSS----------------LTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLD---------RLKTPVETSLRDA 396 (714)
Q Consensus 342 Ls~----------------~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~---------~i~~~i~~~L~~a 396 (714)
+.. .......+| ....+++..+.|. +.+.+|+ .+.+.|.+++...
T Consensus 70 ~~~~~~d~~~e~~~~~~~~~~~~~~~lp---------dg~~i~i~~er~~-~~E~lF~p~~~~~~~~gl~~~i~~sI~~~ 139 (225)
T d2fxua2 70 LCYVALDFENEMATAASSSSLEKSYELP---------DGQVITIGNERFR-CPETLFQPSFIGMESAGIHETTYNSIMKC 139 (225)
T ss_dssp HCCCCSSHHHHHHHHHHCSTTCEEEECT---------TSCEEEESTHHHH-HHHTTTCGGGGTCCSCCHHHHHHHHHHTS
T ss_pred HhhcccchhHHHhhcccCcccceeEECC---------CCCEEEEchHhcc-ccHhhcCccccCCccCChhHHHHHHhhcC
Confidence 322 222222222 1234566655542 2233332 3566666666653
Q ss_pred CCC--CCCCCEEEEEcCCCCchhHHHHHHhhcC--------CCCCcCCCChhHHHhHHHHHHhH
Q 005099 397 KLS--FKDLDEVILVGGSTRIPAVQELVKKMTG--------REPNVTVNPDEVVALGAAVQAGV 450 (714)
Q Consensus 397 ~~~--~~~i~~VvLvGGssrip~v~~~l~~~fg--------~~~~~~~np~eaVA~GAa~~aa~ 450 (714)
..+ +.-...|+|+||+|++|.+.++|.+.+. ..+..+.++..++=+|++++|..
T Consensus 140 ~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 140 DIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp CHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred CcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 211 1123689999999999999999987541 12334456778899999999864
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.55 E-value=4.8e-05 Score=71.59 Aligned_cols=140 Identities=18% Similarity=0.249 Sum_probs=81.2
Q ss_pred EEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhhhc-
Q 005099 264 LVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKMEL- 342 (714)
Q Consensus 264 LVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~L- 342 (714)
||+|+|.+.+.++-+. +|.. +........+||+++++.|.+++.+.-... ....+. ..++..|+..
T Consensus 2 lVVDiG~~~T~v~PV~--dG~~-l~~a~~~~~igG~~lt~~l~~~l~~~~~~~---~~~~~~-------~~~~~i~~~~~ 68 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVY--EGFS-LPHLTRRLDIAGRDITRYLIKLLLLRGYAF---NHSADF-------ETVRMIKEKLC 68 (190)
T ss_dssp CEEEECSSCEEEECEE--TTEE-CSTTCEEESCCHHHHHHHHHHHHHHTTCCC---CTTTTH-------HHHHHHHHHHC
T ss_pred EEEEcCCCcEEEEEeE--CCEE-cccceEEEeccHHHHHHHHHHHHHhcCCcc---cchHHH-------HHHHHHHhhhh
Confidence 6999999999877554 3321 111122257999999999998887542211 111111 1122222222
Q ss_pred ---------------CCCceeeeeccccccCCCCCceeEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC
Q 005099 343 ---------------SSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLD---------RLKTPVETSLRDAKL 398 (714)
Q Consensus 343 ---------------s~~~~~~i~i~~~~~~~~g~~~~~~~itr~efe~l~~~l~~---------~i~~~i~~~L~~a~~ 398 (714)
+........+| ....+.+..+.|. +.+.+|+ .+.+.|.+++..+..
T Consensus 69 ~v~~~~~~e~~~~~~~~~~~~~~~lp---------dg~~i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~ 138 (190)
T d1k8kb1 69 YVGYNIEQEQKLALETTVLVESYTLP---------DGRIIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADI 138 (190)
T ss_dssp CCCSSHHHHHHHHHHCSTTCEEEECT---------TSCEEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCT
T ss_pred hhcccHHHHHHhhhcccceeeeeecC---------CCcEEEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCH
Confidence 11222222222 2234667776654 3344443 377788888887643
Q ss_pred CC--CCCCEEEEEcCCCCchhHHHHHHhhc
Q 005099 399 SF--KDLDEVILVGGSTRIPAVQELVKKMT 426 (714)
Q Consensus 399 ~~--~~i~~VvLvGGssrip~v~~~l~~~f 426 (714)
+. .-...|+|+||+|.+|.+.+.|.+.+
T Consensus 139 d~r~~L~~NIvl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 139 DTRSEFYKHIVLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp TTHHHHHTTCEEESGGGCSTTHHHHHHHHH
T ss_pred hHHHHHHcCEEEECcccCCCCHHHHHHHHH
Confidence 31 12368999999999999999998765
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.32 E-value=0.0027 Score=56.45 Aligned_cols=164 Identities=22% Similarity=0.284 Sum_probs=88.1
Q ss_pred ceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhh
Q 005099 261 ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKM 340 (714)
Q Consensus 261 ~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~ 340 (714)
..+.++|+||||+|.+++.-++... -..-+| -|+-++..+...| +++ + +.-||.+|+
T Consensus 4 ~plaIlDlG~GStDasii~~~g~v~-avhlAG----AG~mVTmlI~~eL--------Gl~---d-------~~lAE~IKk 60 (202)
T d1nbwa3 4 APLAILDLGAGSTDAAIVNAEGQIT-AVHLAG----AGNMVSLLIKTEL--------GLE---D-------LSLAEAIKK 60 (202)
T ss_dssp SSEEEEEECSSEEEEEEECSSSCEE-EEEEEC----CHHHHHHHHHHHH--------TCS---C-------HHHHHHHHH
T ss_pred CceEEEEcCCCccchhhccCCCcEE-EEEecC----CchhhHHHHHHHh--------CCC---c-------HHHHHHHhh
Confidence 4578999999999999998665433 222222 3555665554333 211 0 345777776
Q ss_pred hcCCCceeeeec-------ccccc-------------CCCCCceeEEEecHHHHHHHHHHHHHHH-HHHHHHHHHHcC--
Q 005099 341 ELSSLTQTNISL-------PFITA-------------TADGPKHIDTTLTRVKFEELCSDLLDRL-KTPVETSLRDAK-- 397 (714)
Q Consensus 341 ~Ls~~~~~~i~i-------~~~~~-------------~~~g~~~~~~~itr~efe~l~~~l~~~i-~~~i~~~L~~a~-- 397 (714)
---...+..+.+ .++.. ..++...+.-.++-+++..+=...-+++ ..-+.++|+...
T Consensus 61 yPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~~~lvP~~~~~~~Ekir~vR~~aK~~vfvtNa~RaL~~vsp~ 140 (202)
T d1nbwa3 61 YPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQVSPG 140 (202)
T ss_dssp SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSSTT
T ss_pred cchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCcccHHHHHHHHHHHhhHhHHHHHHHHHhhcCCC
Confidence 421111100000 00000 0011122223344455544433332222 122334444422
Q ss_pred CCCCCCCEEEEEcCCCCchhHHHHHHhhc-CC-------CCCcCCCChhHHHhHHHHH
Q 005099 398 LSFKDLDEVILVGGSTRIPAVQELVKKMT-GR-------EPNVTVNPDEVVALGAAVQ 447 (714)
Q Consensus 398 ~~~~~i~~VvLvGGssrip~v~~~l~~~f-g~-------~~~~~~np~eaVA~GAa~~ 447 (714)
-+..+|..|+|+|||+.=.-|-+++.+.+ .- ++.-..-|..|||.|.++.
T Consensus 141 gnir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 141 GSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp CCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CCcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 23468899999999999888888888776 21 3344557999999999864
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.29 E-value=0.0011 Score=58.94 Aligned_cols=164 Identities=24% Similarity=0.321 Sum_probs=88.7
Q ss_pred ceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHHHHHHHhccccccCCCchhcHHHHHHHHHHHHHhhh
Q 005099 261 ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEKAKM 340 (714)
Q Consensus 261 ~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~ 340 (714)
..+.++|+|||++|.|++.-++.+. -..-+| -|+-++..|...| +++ + ..-||.+|+
T Consensus 4 ~PlAIlDlGaGStDAsii~~~g~v~-a~HlAG----AG~mVTmlI~seL--------Gl~---d-------~~lAE~IKk 60 (203)
T d2d0oa3 4 RPLAILDLGAGSTDASIINPKGDII-ATHLAG----AGDMVTMIIAREL--------GLE---D-------RYLAEEIKK 60 (203)
T ss_dssp SSEEEEEECSSEEEEEEECTTCCEE-EEEEEC----SHHHHHHHHHHHH--------TCC---C-------HHHHHHHHH
T ss_pred CceEEEEcCCCcccHHHhCCCCcEE-EEEecC----cchHhHHHHHHhh--------CCC---c-------HHHHHHHhh
Confidence 4578999999999999998665432 222222 3555555554332 211 1 345777776
Q ss_pred hcCCCceeeeec-------ccccc-------------CCCCCceeEEEecHHHHHHHHHHHHHHH-HHHHHHHHHHcC--
Q 005099 341 ELSSLTQTNISL-------PFITA-------------TADGPKHIDTTLTRVKFEELCSDLLDRL-KTPVETSLRDAK-- 397 (714)
Q Consensus 341 ~Ls~~~~~~i~i-------~~~~~-------------~~~g~~~~~~~itr~efe~l~~~l~~~i-~~~i~~~L~~a~-- 397 (714)
---...+..+.+ .++.. ..++...+.-.++-+++..+=...-+++ ..-+.++|+...
T Consensus 61 yPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~d~lvP~~~~~~~Eki~~vRr~aK~kvfvtNa~RaL~~vsP~ 140 (203)
T d2d0oa3 61 YPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQVSPT 140 (203)
T ss_dssp SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEECSSCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cchhhhccceEEEecCCceEEecCCCChHHheEEEEecCCceeecCCcccHHHHHHHHHHHhhhhhHHHHHHHHHhcCCC
Confidence 411111100000 00000 0011112222334444444333322222 222344555532
Q ss_pred CCCCCCCEEEEEcCCCCchhHHHHHHhhcCC--------CCCcCCCChhHHHhHHHHH
Q 005099 398 LSFKDLDEVILVGGSTRIPAVQELVKKMTGR--------EPNVTVNPDEVVALGAAVQ 447 (714)
Q Consensus 398 ~~~~~i~~VvLvGGssrip~v~~~l~~~fg~--------~~~~~~np~eaVA~GAa~~ 447 (714)
-...+|..|+|||||+.=.-|.+++.+.+.. ++.-..-|..|||.|.++.
T Consensus 141 gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~ 198 (203)
T d2d0oa3 141 GNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILS 198 (203)
T ss_dssp SCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHH
T ss_pred CCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHH
Confidence 2346899999999999988888999888732 2334557899999999864
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.87 E-value=0.0036 Score=55.09 Aligned_cols=127 Identities=15% Similarity=0.144 Sum_probs=80.2
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCC---------CEEecHHHHHhhhhCCCchHHHHhHhhCC
Q 005099 79 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNG---------DRLVGQIAKRQAVVNPENTFFSVKRFIGR 149 (714)
Q Consensus 79 IGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~~KrllG~ 149 (714)
|-||+|+.++++++..+..|.++ +||++...... ...+|+.+....
T Consensus 2 vViD~Gs~~~k~G~age~~P~~~--------~ps~~g~~~~~~~~~~~~~~~~~igd~~~~~~----------------- 56 (140)
T d2fxua1 2 LVCDNGSGLVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----------------- 56 (140)
T ss_dssp EEEEECSSEEEEEETTCSSCSEE--------EECCEEEECTTTC-------CCEEHHHHHHHT-----------------
T ss_pred EEEECCCCeEEEeeCCCCCcceE--------eccceeeecccccccCccccceeeChhHhhcc-----------------
Confidence 67999999999999877777665 57776654321 223444332110
Q ss_pred CchhhhhhhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCCCc--CeEEEEecCCCCHHHHHH
Q 005099 150 KMVEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDSV--TKAVVTVPAYFNDSQRTA 227 (714)
Q Consensus 150 ~~~~v~~~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~~v--~~~VITVPa~f~~~qR~~ 227 (714)
+...+..+-....+.-.+....++.++... .++... ..+++|-|......+|+.
T Consensus 57 ---------------------~~~~~~~p~~~g~v~dwd~~e~~~~~~~~~---~l~~~~~~~pvlltE~~~~~~~~r~~ 112 (140)
T d2fxua1 57 ---------------------GILTLKYPIEHGIITNWDDMEKIWHHTFYN---ELRVAPEEHPTLLTEAPLNPKANREK 112 (140)
T ss_dssp ---------------------TSEEEECSEETTEECCHHHHHHHHHHHHHT---TSCCCGGGSCEEEEECTTCCHHHHHH
T ss_pred ---------------------ccccccCcCcCCcccCHHHHHHHHHHhhhh---hcccCCCCCcceeeccCCCCHHHHHH
Confidence 000011111122223335556666666542 333332 369999999999999999
Q ss_pred HHHH-HHHcCCCeeEEechhHHHHHHcc
Q 005099 228 TKDA-GRIAGLDVLRIINEPTAASLAYG 254 (714)
Q Consensus 228 l~~A-a~~AGl~~~~li~Ep~AAAlay~ 254 (714)
+.+. .+..+++-+.+...|..+++++|
T Consensus 113 ~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 113 MTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp HHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred HHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 8775 56678999999999999998765
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.37 E-value=0.0051 Score=55.33 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=82.6
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEecCCCEEecHHHHHhhhhCCCchHHHHhHhhCCCchhhhh
Q 005099 77 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMVEVDE 156 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~KrllG~~~~~v~~ 156 (714)
+.|-||+|+.++++++.-+..|.++ +||+|+.... ..+|.......... ......++|...
T Consensus 4 PavViD~GS~~~KaG~age~~P~~i--------~Ps~vg~~~~--~~~~~~~~~~~~~~----~~~~~~~ig~e~----- 64 (158)
T d1k8ka1 4 PACVVDCGTGYTKLGYAGNTEPQFI--------IPSCIAIKES--AKVGDQAQRRVMKG----VDDLDFFIGDEA----- 64 (158)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEE--------EESCEEECC-------------CCCT----TGGGCEEEGGGG-----
T ss_pred CcEEEECCCCeEEEEECCCCCCCEE--------eccceeeccc--ccccCchhcccccC----CCccceecChhh-----
Confidence 4688999999999999876677655 6888876533 22232221110000 000011122110
Q ss_pred hhccceeEEEEcCCCcEEEEeCCCCccccHHHHHHHHHHHHHHHHHhhcCC--CcCeEEEEecCCCCHHHHHHHHHH-HH
Q 005099 157 ESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLND--SVTKAVVTVPAYFNDSQRTATKDA-GR 233 (714)
Q Consensus 157 ~~~~~~~~v~~~~~g~~~v~~~~~~~~~~~eev~a~~L~~l~~~a~~~~~~--~v~~~VITVPa~f~~~qR~~l~~A-a~ 233 (714)
.. .+...+..+-....+.-.+....++.++.. +.+.. .-..++||-|...+..+|+.+-+. .+
T Consensus 65 -~~----------~~~~~~~~pi~~G~i~dwd~~e~l~~~~~~---~~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE 130 (158)
T d1k8ka1 65 -IE----------KPTYATKWPIRHGIVEDWDLMERFMEQVIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE 130 (158)
T ss_dssp -TS----------CTTSEEECCEETTEESCHHHHHHHHHHHHH---TTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred -hh----------CCCccccccccCCeEecHHHHHHHHHHHHH---HhcccCCCCCceeeeecCCCCHHHHHHHHHHHhh
Confidence 00 011111111112223334555555555433 22332 334799999999999999987664 56
Q ss_pred HcCCCeeEEechhHHHHHHccccc
Q 005099 234 IAGLDVLRIINEPTAASLAYGFEK 257 (714)
Q Consensus 234 ~AGl~~~~li~Ep~AAAlay~~~~ 257 (714)
..+++-+.+...|..++++++...
T Consensus 131 ~~~vpa~~~~~~~~Lslya~g~~~ 154 (158)
T d1k8ka1 131 SFNVPGLYIAVQAVLALAASWTSR 154 (158)
T ss_dssp TSCCSEEEEEEHHHHHHHHGGGST
T ss_pred hcCCCEEEEEchhhhhheeCCCCC
Confidence 678899999999999999987653
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.036 Score=52.03 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCCchhHHHHHHh----hc---CCCCCcCCCChhHHHhHHHHHH
Q 005099 402 DLDEVILVGGSTRIPAVQELVKK----MT---GREPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~----~f---g~~~~~~~np~eaVA~GAa~~a 448 (714)
.++.|+++||.+..-.+++.+.+ ++ +.++..+.|...+.|+||.+.-
T Consensus 157 ~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 157 NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 46789999998877777766643 34 3455667789999999998763
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=95.77 E-value=0.0028 Score=59.13 Aligned_cols=32 Identities=0% Similarity=-0.234 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCCeeEEechhHHHHHHc
Q 005099 222 DSQRTATKDAGRIAGLDVLRIINEPTAASLAY 253 (714)
Q Consensus 222 ~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAlay 253 (714)
....+.+.++++.+|+++..++.+|.|+|.+.
T Consensus 161 ~~~i~nl~~~~~~~~l~v~~~~~~~~asa~a~ 192 (193)
T d1e4ft1 161 LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGV 192 (193)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhEEEhHHhhhhcc
Confidence 45678899999999999999999999999864
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=95.67 E-value=0.0058 Score=58.80 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCCCchhHHHHHHhhcCCCCCcCCCChhHHHhHHHHHHhHhhCC
Q 005099 402 DLDEVILVGGSTRIPAVQELVKKMTGREPNVTVNPDEVVALGAAVQAGVLAGD 454 (714)
Q Consensus 402 ~i~~VvLvGGssrip~v~~~l~~~fg~~~~~~~np~eaVA~GAa~~aa~ls~~ 454 (714)
.++.|.+.||.++.+.+.+.+.+.++.++.+..++ ++.|+|||+.|+.-.+.
T Consensus 147 ~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~-e~~alGaA~la~~~~G~ 198 (235)
T d1r59o2 147 DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANL-ETTALGAAYLAGLAVGF 198 (235)
T ss_dssp CCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCC-CTTTHHHHHHHHHHHTS
T ss_pred CCcEEEecCcchhCHHHHhhhhhccceeeeecccc-chHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999988876665 48899999999986664
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=94.82 E-value=0.3 Score=40.23 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHHHHHHhhc--CCCcC--eEEEEecCCCCHHHHHHHHHHHHHcCCCeeEEechhHHHHHH
Q 005099 185 AAEEISAQVLRKLVDDASKFL--NDSVT--KAVVTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLA 252 (714)
Q Consensus 185 ~~eev~a~~L~~l~~~a~~~~--~~~v~--~~VITVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAla 252 (714)
.++++...+.+.+.+..++.- ...+. .+.+.+|...+...+..+.... -.+..+.+.|+-.||++.
T Consensus 41 ~~~~~~~~i~~~i~~~~~~ag~~~~~~~~~~~~~g~aG~~~~~~~~~l~~~~--~~~~~v~v~nDa~~A~~g 110 (114)
T d1zc6a1 41 GIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGLGLSGVHNRQWAGEFESQA--PGFARLSLATDGYTTLLG 110 (114)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEEEESCCCTTSHHHHHHHTC--CCCSEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCChhhhceeEEEEEecCCCcHHHHHHHHHhC--CCCCeEEEECHHHHHHHH
Confidence 356666666666655544321 11222 3567889888777776665432 234578899999999886
|
| >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.98 E-value=0.045 Score=48.98 Aligned_cols=43 Identities=21% Similarity=0.035 Sum_probs=31.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHc--------CC------CeeEEechhHHHHHHc
Q 005099 211 KAVVTVPAYFNDSQRTATKDAGRIA--------GL------DVLRIINEPTAASLAY 253 (714)
Q Consensus 211 ~~VITVPa~f~~~qR~~l~~Aa~~A--------Gl------~~~~li~Ep~AAAlay 253 (714)
.+|+..|..+...+++++++....- |- ..+.+++||.+|.++.
T Consensus 103 ~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~~~ 159 (164)
T d2fsja2 103 VIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYL 159 (164)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHHHHHH
Confidence 4688899998888999998876421 11 3456789999987744
|
| >d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=92.53 E-value=4.7 Score=38.54 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=42.2
Q ss_pred CCCcCeEEEEecCCCCHHHHH--------HHHHHHHHcCCCeeEEechhHHHHHHcccc-----------c-CCCceEEE
Q 005099 206 NDSVTKAVVTVPAYFNDSQRT--------ATKDAGRIAGLDVLRIINEPTAASLAYGFE-----------K-KNNETILV 265 (714)
Q Consensus 206 ~~~v~~~VITVPa~f~~~qR~--------~l~~Aa~~AGl~~~~li~Ep~AAAlay~~~-----------~-~~~~~vLV 265 (714)
+.++..+.|+||.-.+..... .........+...+.+.++..+++...... . .....+++
T Consensus 51 ~~~~~~igI~~pG~vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 130 (319)
T d1sz2a1 51 KVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAV 130 (319)
T ss_dssp CCCCCEEEEEESSCCCSSEECCSSSCCCEEHHHHHHHHTCSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEE
T ss_pred CCCcceEEEEcccCCCCCcccccccccccChHHHHHhhcccceeecceeeeeehhhhhhhhhhHHhhCcccCCCcceEEE
Confidence 345667778887554321100 112233344566677777777776653321 1 12456777
Q ss_pred EEeCCcceEEEEEEEcCce
Q 005099 266 FDLGGGTFDVSVLEVGDGV 284 (714)
Q Consensus 266 vD~GgGT~Dvsv~~~~~~~ 284 (714)
+-.|.|+.=+....+..+.
T Consensus 131 i~~g~G~g~~~~~~~~~g~ 149 (319)
T d1sz2a1 131 YGAGTGLGVAHLVHVDKRW 149 (319)
T ss_dssp EEESSSEEEEEEEEETTEE
T ss_pred EcccccceEEEEecccCCc
Confidence 7777776555555554443
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=91.45 E-value=0.17 Score=47.76 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=38.7
Q ss_pred CCCEEEEEcCC-CCchhHHHHHHhhc---CCCCCcCCCChhHHHhHHHHHH
Q 005099 402 DLDEVILVGGS-TRIPAVQELVKKMT---GREPNVTVNPDEVVALGAAVQA 448 (714)
Q Consensus 402 ~i~~VvLvGGs-srip~v~~~l~~~f---g~~~~~~~np~eaVA~GAa~~a 448 (714)
++..|++.||. +..|.+++.+++++ +.++..+.+++.+-|+|||+++
T Consensus 216 ~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 216 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 45689999985 67999999999988 3456677789999999999865
|
| >d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.61 E-value=2.9 Score=34.21 Aligned_cols=45 Identities=7% Similarity=-0.037 Sum_probs=34.8
Q ss_pred CCcCeEEEEecCCCCHHHHHHHHHHHHHc--CC-CeeEEechhHHHHH
Q 005099 207 DSVTKAVVTVPAYFNDSQRTATKDAGRIA--GL-DVLRIINEPTAASL 251 (714)
Q Consensus 207 ~~v~~~VITVPa~f~~~qR~~l~~Aa~~A--Gl-~~~~li~Ep~AAAl 251 (714)
.++..+++.++..=.+..++.+.++.+.. ++ ..+.+.|+..+|..
T Consensus 66 ~~i~~i~~GlAG~~~~~~~~~l~~~l~~~~~~~~~~v~v~nDa~~Al~ 113 (117)
T d2ch5a2 66 VPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIA 113 (117)
T ss_dssp CCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHH
T ss_pred ccccEEEEEeeccCcchhHHHHHHHHHHHCCCCCceEEEeccHHHHHh
Confidence 46778999999987888888898887665 55 45678888877654
|
| >d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=87.90 E-value=0.2 Score=44.33 Aligned_cols=19 Identities=37% Similarity=0.291 Sum_probs=16.5
Q ss_pred eEEEEEcCccceEEEEEEC
Q 005099 77 KVVGIDLGTTNSAVAAMEG 95 (714)
Q Consensus 77 ~vIGID~GTt~s~va~~~~ 95 (714)
++||||.|.+++++++..+
T Consensus 1 m~I~iD~Gy~nvK~a~~~~ 19 (157)
T d2zgya1 1 MLVFIDDGSTNIKLQWQES 19 (157)
T ss_dssp CEEEEEECSSEEEEEEECS
T ss_pred CEEEEecCCCcEEEEEecC
Confidence 4899999999999997653
|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=82.94 E-value=0.39 Score=43.30 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=28.9
Q ss_pred CceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHH
Q 005099 260 NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRI 305 (714)
Q Consensus 260 ~~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l 305 (714)
+..+||+|+|||++.+++++ ++.+.... ...+|.-.+.+.+
T Consensus 2 e~~~lviDIGGGStEli~~~--~~~i~~~~---Sl~lG~vrl~e~f 42 (180)
T d1t6ca2 2 EGEVCVVDQGGGSTEYVFGK--GYKVREVI---SLPIGIVNLTETF 42 (180)
T ss_dssp CSEEEEEEEETTEEEEEEEE--TTEEEEEE---EECCCHHHHHHHH
T ss_pred CCCEEEEEeCCChHhhEEee--CCceeeEE---EeecceEEeeccc
Confidence 35799999999999999875 33332222 2579987776655
|
| >d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Escherichia coli [TaxId: 562]
Probab=81.00 E-value=0.54 Score=41.95 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=27.9
Q ss_pred ceEEEEEeCCcceEEEEEEEcCceEEEEEecCCCCCChhHHHHHH
Q 005099 261 ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRI 305 (714)
Q Consensus 261 ~~vLVvD~GgGT~Dvsv~~~~~~~~~vl~~~gd~~lGG~d~D~~l 305 (714)
.+.||+|+|||++.+++++ ++.+.-.. ...+|.-.+.+.+
T Consensus 2 gr~Lv~DIGGGStEl~~~~--~~~~~~~~---Sl~lG~vrl~e~~ 41 (177)
T d1u6za3 2 GRKLVIDIGGGSTELVIGE--NFEPILVE---SRRMGCVSFAQLY 41 (177)
T ss_dssp SCEEEEEECSSCEEEEEEE--TTEEEEEE---EESCCHHHHHHHH
T ss_pred CCEEEEEeCCChhheEEEE--CCcEeEEE---EeccceEEeeccc
Confidence 4689999999999999765 44332221 2689987766555
|