Citrus Sinensis ID: 005101

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710----

MKIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVMRVRMMTTTVMRGEDENNHNVDNHLSSGTEEREDNDDMENELKLTKSSLRRCANLIQLVYGKSTSTSETLSKEVQDSIEGEESDEDEFFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIRRHSEV

ccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccEEEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEEccccHHHHHcccccccEEEEEccccccEEEEEEEEEEEccccccccccccccEEEEEEEEEEEEEcEEEEEccccccccccccccccEEEEEEEEEccccccEEEEEEEccccccccEEEEEEEEEcccccEEEEEEEEEEcccEEEEEcEEEEEcccccHHHHHHcccccEEEEEcccccEEcccccccEEEEEEEccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

cHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHccccccHHHHHcccccccccccHHHccccEEEEccccccccccccccccccHHHHccccHHHccccHHHHHHHHHHHccccccccccccHHHHHccccccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEccccccEEEEEEccccHHHHHcccccccEEEEcccccccccEEEEEEEEEccccccHHccccccEEEEEcccEccccEEEEEccccccccEEEcccccccEEEEEEccccccccEEEEEEEEccccccEEEEEEEEEEEccccHHHEEEEEEccccHHHHcccEEEcccccccEEEEEEcccEEEEcccHHHHHHHccccccccEEEcHHHHHHHcHHEEEEEcccccccccccccHHccccccccccccccHHHHHHHcccccccccccccccEEccccccccccccHHHHHHcccccccccccccccccHccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccc

MKIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVMRVRMMTTTVmrgedennhnvdnhlssgteerednddMENELKLTKSSLRRCANLIQLVYgkststsetLSKEvqdsiegeesdedeffkpkvegnklregldsgivntddcskiksyedLKSWKQEEVYESIRDrfvtgdwskaaqrnqvskgksedddsddavygdyedletgekqegqrkdnsgcegienedESAVEERRLKKLSLRAKfdvqydgsespeeemnekdgakfhcgqpneiglVDQMKEEIEFRKQMNIaelndldevtrlelegfrtgtylrmeihdvpfemveyfdpchpvlvggiglgeqNVGYMQVRLKRHRWWHkkvlksrdpiivsigwrrfqtipvyaiedrsgrhrmlkytpehmhclatfwgplappqtgvVAVQNLSNNQASFRIAATAVVLEFNHevkikkkiklvgypckifkkTALIKDMFTSDLEVAQCEGKEAAKEeignqpkrkggqpregiarctfedrilMSDIVFMRgwadveiprfynplttalqprDKIWQGMKTVAELRREHnlsipvnknslykpigrtprkfnplvipkslqaalpfeskpkdipgrkrpllenrravvmepherKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIRRHSEV

MKIALWNVLNLMMESILEKLSLDMVLILVIGRIhmkramtttVMRVRMMTTtvmrgedennhnvdnhlssgteeredndDMENELKLTKSSLRRCANLIQLvygkststsetlskevqdsiegeesdedeffkpkvegnklregldsgivntddcskiksyedlkswkqeeVYESIRdrfvtgdwskaaqrnqvskgksedddsddaVYGDYedletgekqegqrkdnsgcegienedesaVEERRLKklslrakfdvqydgsespeeemnekdgakfhcGQPNEIGLVDQMKEEIEFRKQMNiaelndldevtrLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRhrwwhkkvlksrdpiivsigwrrfqtipvyaiedrsGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFnhevkikkkiklvgypcKIFKKTALIKDMFTSDLEVAQCEGKEAAkeeignqpkrkggqpregiARCTFEDRILMSDIVFMRGWADVEIPRFYNplttalqprdkIWQGMKTVAELRrehnlsipvnknslykpiGRTPRKFNPLVIPKSLqaalpfeskpkdipgrkrpLLENRRavvmepherkvHVLFQQLQLIRNEKMKkrklkqqhrkkeieaerakdeqltrkrqreerreryreqdklmkkirrhsev

MKIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAmtttvmrvrmmtttvmrGEDENNHNVDNHLSSGTeerednddmeneLKLTKSSLRRCANLIQLVYGkststsetlskeVQdsiegeesdedeFFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQvskgksedddsddavygdyedLETGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEkmkkrklkqqhrkkEIEAERAKDeqltrkrqreerreryreqDKLMKKIRRHSEV

**IALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVMRVRMMTTT****************************************RRCANLIQLVYG********************************************IVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDW****************************************************************************************************IGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQ*************************IARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIP************************************RKVHVLFQQLQLI**********************************************************

*KIALWNVLNLMMESILEKLSLDMVLILVIGRIHMK***********************************************************ANLIQLVYGKST*************************************************KIKSYEDLKSWKQEEVYESIRDRF********************************************************************************************KDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEAAKEEIGNQP*RKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTAL***************************************RKFNPLVIPKSLQAALP***************************ERKVHVLFQQLQLI**********************************************************

MKIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVMRVRMMTTTVMRGEDENNHNVDNHLS*************NELKLTKSSLRRCANLIQLVYGKS************************FFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWS*******************DAVYGDYEDL******************************RLKKLSLRAKFDVQ**************DGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQC**********************EGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKM***************************************QDKL**********

MKIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVMRVRMMTTTV**************************DME*********LRRCANLIQLVYGKSTSTSETLS**************DEFFKPKVE**********GIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWS*********************VYGDY*DLET***********************************RAKFDVQYDG**********************EIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKD****KRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQD************

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MKIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVMRVRMMTTTVMRGEDENNHNVDNHLSSGTEEREDNDDMENELKLTKSSLRRCANLIQLVYGKSTSTSETLSKEVQDSIEGEESDEDEFFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDKLMKKIRRHSEV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		714	2.2.26 [Sep-21-2011]
Q14692		1282	Ribosome biogenesis prote	yes	no	0.686	0.382	0.466	1e-125
O94653		1121	Ribosome biogenesis prote	yes	no	0.833	0.530	0.375	1e-104
Q08965		1183	Ribosome biogenesis prote	yes	no	0.830	0.501	0.351	4e-94
A8MV67		101	Putative BMS1-like protei	no	no	0.140	0.990	0.643	1e-36
A8MXU9		101	Putative BMS1-like protei	no	no	0.140	0.990	0.623	1e-35
A8MTN0		101	Putative BMS1-like protei	no	no	0.140	0.990	0.613	1e-34
Q5SWD9		803	Pre-rRNA-processing prote	no	no	0.365	0.325	0.224	1e-15
Q5XGY1		815	Pre-rRNA-processing prote	N/A	no	0.336	0.294	0.237	1e-15
Q9VP47		814	Pre-rRNA-processing prote	no	no	0.291	0.255	0.251	9e-13
Q2NL82		804	Pre-rRNA-processing prote	no	no	0.243	0.216	0.242	7e-11

>sp\|Q14692\|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1	Back alignment and function desciption

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/534 (46%), Positives = 326/534 (61%), Gaps = 44/534 (8%)

Query: 154  DCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYE 213
            DCS+    E    W  EEV  SIRD FVTG W       +V          D+ +YGD+E
Sbjct: 733  DCSRF-LVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLA-------EDEELYGDFE 784

Query: 214  DLETGEKQEGQRKDNSGCEGIE---------NEDESAVEERRLKKLSLRAKFDVQYDGSE 264
            DLETG+  +G+   N+  E IE         +E+ESA ++   KK  L+  FD +YD  E
Sbjct: 785  DLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDAEYDEGE 844

Query: 265  SPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTG 324
            S                        D +K E++ + Q+N AE  D D+  R++ EGFR G
Sbjct: 845  ST---------------------YFDDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPG 883

Query: 325  TYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPI 384
             Y+R+EI +VP E V+ FDP +P+++GG+G  E NVGY+Q+RLK+HRW+ KK+LKSRDPI
Sbjct: 884  MYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPI 942

Query: 385  IVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNN 444
            I S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FWGP+ P  TG +A+Q++S  
Sbjct: 943  IFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGI 1002

Query: 445  QASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEA- 503
               FRIAAT VVL+ +  +KI KK+KL G+P KIFK T+ IK MF S LEVA+ EG    
Sbjct: 1003 MPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIR 1062

Query: 504  AKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQP-- 561
                I  Q K+    P EG  R +FED++LMSDIVFMR W  V IP FYNP+T+ L+P  
Sbjct: 1063 TVSGIRGQIKKALRAP-EGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVG 1121

Query: 562  RDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPK 621
                W GM+T  +LR  H + +  NK+SLYKPI R  + FN L IPK+LQ ALPF++KPK
Sbjct: 1122 EKDTWSGMRTTGQLRLAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPK 1181

Query: 622  -DIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKE 674
                  K P    R AV+ EPHERK+  L   L  + ++KMKK K ++    KE
Sbjct: 1182 TQAKAGKVPKDRRRPAVIREPHERKILALLDALSTVHSQKMKKAKEQRHLHNKE 1235

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.
Homo sapiens (taxid: 9606)

>sp\|O94653\|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2	Back alignment and function description

>sp\|Q08965\|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1	Back alignment and function description

>sp\|A8MV67\|YO021_HUMAN Putative BMS1-like protein ENSP00000383088 OS=Homo sapiens PE=5 SV=1	Back alignment and function description

>sp\|A8MXU9\|YO022_HUMAN Putative BMS1-like protein ENSP00000383048 OS=Homo sapiens PE=5 SV=1	Back alignment and function description

>sp\|A8MTN0\|YI027_HUMAN Putative BMS1-like protein ENSP00000382360 OS=Homo sapiens PE=5 SV=1	Back alignment and function description

>sp\|Q5SWD9\|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=2 SV=1	Back alignment and function description

>sp\|Q5XGY1\|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1	Back alignment and function description

>sp\|Q9VP47\|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1	Back alignment and function description

>sp\|Q2NL82\|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		714
224133372		1181	predicted protein [Populus trichocarpa]	0.872	0.527	0.685	0.0
359477919		1139	PREDICTED: ribosome biogenesis protein B	0.841	0.527	0.654	0.0
298205174		1305	unnamed protein product [Vitis vinifera]	0.892	0.488	0.641	0.0
356544500		1181	PREDICTED: ribosome biogenesis protein B	0.815	0.492	0.646	0.0
357473081		1200	Ribosome biogenesis protein BMS1-like pr	0.851	0.506	0.649	0.0
357473083		1175	Ribosome biogenesis protein BMS1-like pr	0.851	0.517	0.649	0.0
356541129		1176	PREDICTED: ribosome biogenesis protein B	0.801	0.486	0.647	0.0
449444194		1198	PREDICTED: ribosome biogenesis protein B	0.827	0.493	0.644	0.0
242041043		1184	hypothetical protein SORBIDRAFT_01g03627	0.886	0.534	0.588	0.0
297848950		1148	hypothetical protein ARALYDRAFT_470695 [	0.824	0.513	0.611	0.0

>gi\|224133372\|ref\|XP_002328026.1\| predicted protein [Populus trichocarpa] gi\|222837435\|gb\|EEE75814.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/665 (68%), Positives = 526/665 (79%), Gaps = 42/665 (6%)

Query: 69   SSGTEEREDNDDMENELKLTKSSLRRC-----ANLIQLVYGKSTSTSETLSKEVQDSIEG 123
            S  +EE  D +DM N  K  +S + R       NL+Q VYGKS ST      E QD  E 
Sbjct: 540  SEFSEEDRDEEDMGNISKWKESLVDRTFSKQNNNLMQRVYGKSASTP---INEKQDGSED 596

Query: 124  EESDEDEFFKPKVEGNK-LREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVT 182
            EESD DEFFK K EGNK LREG D   V+ D+CSK  +Y DLK+WK EE+YESIRDRFVT
Sbjct: 597  EESD-DEFFKLKGEGNKKLREGFDVENVDADECSKFTNYSDLKNWKDEEIYESIRDRFVT 655

Query: 183  GDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAV 242
            GDWSKAAQRN++     EDD+  D+VYGD+EDLETGEK    +K+ SG   ++ EDE   
Sbjct: 656  GDWSKAAQRNKLPTANDEDDE--DSVYGDFEDLETGEKHGNHQKEESGNVSMQKEDELE- 712

Query: 243  EERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQM 302
            E+R+LKKL+L               EE++EK GAKFH GQ NE G +D++KEEIE RKQ 
Sbjct: 713  EQRKLKKLALH--------------EEVDEKHGAKFHRGQANESGYIDKLKEEIEIRKQR 758

Query: 303  NIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGY 362
            NIAELNDLDE TRLE+EGF+TGTYLR+E+HDVPFEMVE+FDPC P+LVGGIGLGE++VGY
Sbjct: 759  NIAELNDLDEETRLEIEGFQTGTYLRLELHDVPFEMVEHFDPCDPILVGGIGLGEEHVGY 818

Query: 363  MQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLA 422
            MQ RLKRHRW H+KVLK++DP+I SIGWRR+QT PVYAIEDR+GRHRMLKYTPEHMHCLA
Sbjct: 819  MQARLKRHRW-HRKVLKTKDPVIFSIGWRRYQTTPVYAIEDRNGRHRMLKYTPEHMHCLA 877

Query: 423  TFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKT 482
            TFWGPLAPP TGVVAVQNL+NNQASFRI ATAVVLEFNH  K+ KK+KLVG+PCKIFKKT
Sbjct: 878  TFWGPLAPPNTGVVAVQNLANNQASFRITATAVVLEFNHAAKMVKKVKLVGHPCKIFKKT 937

Query: 483  ALIKDMFTSDLEVAQCEG-------------KEAAKEEIGNQPKRKGGQPREGIARCTFE 529
            ALI +MFTSDLEVA+ EG             K+AAK+EIGNQP +KGG PREGIARCTFE
Sbjct: 938  ALIMNMFTSDLEVARFEGAAVRTVSGIRGQVKKAAKDEIGNQPTKKGGAPREGIARCTFE 997

Query: 530  DRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNS 589
            DRILMSDIVF+R W  VE P FYNPLTTALQPR+K WQGMKTVAELRREHNL IPVNK+S
Sbjct: 998  DRILMSDIVFLRAWTQVEAPCFYNPLTTALQPRNKTWQGMKTVAELRREHNLPIPVNKDS 1057

Query: 590  LYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVL 649
            LY+PI RTP+KFNPLVIPKSLQA LPFESKPKDIP + R  LE RRAVVMEP ERKVH L
Sbjct: 1058 LYRPIERTPKKFNPLVIPKSLQATLPFESKPKDIP-KGRATLERRRAVVMEPDERKVHAL 1116

Query: 650  FQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIR 709
             QQL+LI N+KM+KRKLK+   + ++EAE+AKDE+L+RKR+REERRERYR Q+KL KK R
Sbjct: 1117 VQQLRLITNDKMRKRKLKKDQERNKLEAEKAKDEELSRKRKREERRERYRVQEKLKKKAR 1176

Query: 710  RHSEV 714
            R+S+ 
Sbjct: 1177 RNSDA 1181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359477919\|ref\|XP_002270164.2\| PREDICTED: ribosome biogenesis protein BMS1 homolog [Vitis vinifera]	Back alignment and taxonomy information

>gi\|298205174\|emb\|CBI17233.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356544500\|ref\|XP_003540688.1\| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|357473081\|ref\|XP_003606825.1\| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi\|355507880\|gb\|AES89022.1\| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357473083\|ref\|XP_003606826.1\| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi\|355507881\|gb\|AES89023.1\| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356541129\|ref\|XP_003539035.1\| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|449444194\|ref\|XP_004139860.1\| PREDICTED: ribosome biogenesis protein BMS1 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|242041043\|ref\|XP_002467916.1\| hypothetical protein SORBIDRAFT_01g036270 [Sorghum bicolor] gi\|241921770\|gb\|EER94914.1\| hypothetical protein SORBIDRAFT_01g036270 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|297848950\|ref\|XP_002892356.1\| hypothetical protein ARALYDRAFT_470695 [Arabidopsis lyrata subsp. lyrata] gi\|297338198\|gb\|EFH68615.1\| hypothetical protein ARALYDRAFT_470695 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		714
TAIR\|locus:2033050		1147	AT1G06720 [Arabidopsis thalian	0.689	0.428	0.583	3.7e-172
ZFIN\|ZDB-GENE-060720-2		1221	bms1l "BMS1-like, ribosome ass	0.686	0.401	0.441	2.5e-106
UNIPROTKB\|E1BPP2		1290	BMS1 "Uncharacterized protein"	0.599	0.331	0.482	3.5e-105
UNIPROTKB\|F1PKN2		1287	BMS1 "Uncharacterized protein"	0.603	0.334	0.472	2.5e-104
UNIPROTKB\|F1NH69		1304	BMS1 "Uncharacterized protein"	0.605	0.331	0.477	8.6e-104
UNIPROTKB\|Q14692		1282	BMS1 "Ribosome biogenesis prot	0.599	0.333	0.480	1.3e-102
ASPGD\|ASPL0000005995		1179	AN6334 [Emericella nidulans (t	0.691	0.418	0.417	2.8e-98
FB\|FBgn0036686		1159	CG7728 [Drosophila melanogaste	0.760	0.468	0.389	1.6e-95
DICTYBASE\|DDB_G0287891		1205	bms1l "BMS1-like ribosome biog	0.726	0.430	0.390	3.8e-94
UNIPROTKB\|F1RG23		399	BMS1 "Uncharacterized protein"	0.464	0.832	0.544	1.5e-92

TAIR\|locus:2033050 AT1G06720 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1451 (515.8 bits), Expect = 3.7e-172, Sum P(2) = 3.7e-172
 Identities = 294/504 (58%), Positives = 351/504 (69%)

Query:   217 TGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKF--DVQYDGSESPEE--EMNE 272
             TG+  +   +D +   G E ED+    +    +   + K   +++   +E+ +E  E+ E
Sbjct:   643 TGDWSKAALRDKNLGTGGEGEDDELYGDFEDLETGEKHKSHENLESGANENEDEDAEVVE 702

Query:   273 KDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIH 332
             +DG      Q +E G  D++KE  E  KQ N  E NDLDE TR+EL GFRTGTYLR+EIH
Sbjct:   703 RDGNNPR-SQADEPGYADKLKEAQEITKQRNELEYNDLDEETRIELAGFRTGTYLRLEIH 761

Query:   333 DVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRR 392
             +VP+EMVE+FDPCHP+LVGGIG GE NVGYMQ RLK+HRW HKKVLK+RDPIIVSIGWRR
Sbjct:   762 NVPYEMVEFFDPCHPILVGGIGFGEDNVGYMQARLKKHRW-HKKVLKTRDPIIVSIGWRR 820

Query:   393 FQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAA 452
             +QTIPV+AIEDR+GRHRMLKYTPEHMHCLA+FWGPL PP TG VA QNLSNNQA FRI A
Sbjct:   821 YQTIPVFAIEDRNGRHRMLKYTPEHMHCLASFWGPLVPPNTGFVAFQNLSNNQAGFRITA 880

Query:   453 TAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEAAKEE-IGNQ 511
             T+VVLEFNH+ +I KKIKLVG PCKI KKTA IKDMFTSDLE+A+ EG        I  Q
Sbjct:   881 TSVVLEFNHQARIVKKIKLVGTPCKIKKKTAFIKDMFTSDLEIARFEGSSVRTVSGIRGQ 940

Query:   512 PKRKG-----GQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIW 566
              K+ G      +  EGIARCTFED+I MSD+VF+R W  VE+P+FYNPLTTALQPRDK W
Sbjct:   941 VKKAGKNMLDNKAEEGIARCTFEDQIHMSDMVFLRAWTTVEVPQFYNPLTTALQPRDKTW 1000

Query:   567 QGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGR 626
              GMKT  ELRRE N+ IPVNK+SLYK I R  +KFNPL IPK L+  LPF SKPK+IP R
Sbjct:  1001 NGMKTFGELRRELNIPIPVNKDSLYKAIERKQKKFNPLQIPKRLEKDLPFMSKPKNIPKR 1060

Query:   627 KRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEXXXXXXXXXXXXXXEIEAERAKDXXXX 686
             KRP LE++RAV+MEP ERK H + QQ QL+++               E EAE+AK+    
Sbjct:  1061 KRPSLEDKRAVIMEPKERKEHTIIQQFQLLQHHTMKKKKATDQKKRKEYEAEKAKNEEIN 1120

Query:   687 XXXXXXXXXXXXXXXDKLMKKIRR 710
                            DK  KK RR
Sbjct:  1121 KKRRREERRDRYREEDKQKKKTRR 1144

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

ZFIN\|ZDB-GENE-060720-2 bms1l "BMS1-like, ribosome assembly protein (yeast)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BPP2 BMS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PKN2 BMS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NH69 BMS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q14692 BMS1 "Ribosome biogenesis protein BMS1 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000005995 AN6334 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

FB\|FBgn0036686 CG7728 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0287891 bms1l "BMS1-like ribosome biogenesis protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RG23 BMS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		714
COG5192		1077	COG5192, BMS1, GTP-binding protein required for 40	1e-106
pfam04950		293	pfam04950, DUF663, Protein of unknown function (DU	8e-74
COG5177		769	COG5177, COG5177, Uncharacterized conserved protei	1e-11

>gnl\|CDD\|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

 Score =  347 bits (891), Expect = e-106
 Identities = 185/675 (27%), Positives = 318/675 (47%), Gaps = 55/675 (8%)

Query: 47   RMMTTTVMRGEDENNHNVDNHLSSGTEEREDNDDME----NELKLTKSSLRRCANLIQLV 102
                  +   ++ +N  V     S  +E E N   +    ++L  ++S  R   N+ ++ 
Sbjct: 447  TGKKGAINNEDESDNEEVAFDSDSQFDESEGNLRWKEGLASKLAYSQSGKRG-RNIQKIF 505

Query: 103  YGKSTSTSETL------SKEVQDSIEGEESDEDEFFKPKVEGNKLREGLDSGIVNTDDCS 156
            Y +S S  E +      S +  +S    + + ++FF      N+      S   N +   
Sbjct: 506  YDESLSPEECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVANE------SISSNHEKLM 559

Query: 157  KIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLE 216
            + +  E  K W        ++ RF       + +  +      E  + +D    +     
Sbjct: 560  ESEFEELKKKWSS---LAQLKSRFQKDATLDSIEGEEELIQDDEKGNFEDLEDEENSSDN 616

Query: 217  TGEKQEGQRKDNSGCEGIENED-ESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDG 275
              E+  G        E  +  D E+  EE   KK  LR  F+++       E    EK  
Sbjct: 617  EMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELE-------ERGDPEK-- 667

Query: 276  AKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVP 335
                     ++    + K +IE + ++N +E   +   +R+ +EG+R G Y+R+ +  VP
Sbjct: 668  --------KDVDWYTEEKRKIEEQLKINRSEFETMVPESRVVIEGYRAGRYVRIVLSHVP 719

Query: 336  FEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT 395
             E V+ F+  +P+++GG+   E+ +G +Q R+KRHRW HKK+LK+ DP+I S+GWRRFQ+
Sbjct: 720  LEFVDEFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRW-HKKILKTNDPLIFSVGWRRFQS 778

Query: 396  IPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAV 455
            IPVY+++D   R+RMLKYTPEHMHC  +F+GP+ PP TG  AVQ+   +   FR+ A   
Sbjct: 779  IPVYSMKDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSEKGD---FRVLALGT 835

Query: 456  VLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEAAKEEIGNQPKRK 515
            + + N + K+ KK+KLVGYP +I + T  ++DMFTSDLEV + EG    K   G + + K
Sbjct: 836  ITDVNGDAKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGAS-LKAVSGLRGQVK 894

Query: 516  GGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAEL 575
            G   + G  R  FE ++LMSDI+ +R +  VE+ R + P+   L      W+G++ + E+
Sbjct: 895  GPHGKNGEYRAVFEGKMLMSDIITLRCFVPVEVHRIFIPVDNLLGK----WRGLRRLHEI 950

Query: 576  RREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRR 635
            R    L+      +                +P+ +++ LP + +   +          RR
Sbjct: 951  RESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIESKLPLDKRSIAVVS--------RR 1002

Query: 636  AVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERR 695
              +  P E +     +   +    K ++ K + +  ++  E E  K E+   +R R+   
Sbjct: 1003 IELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIH 1062

Query: 696  ERYREQDKLMKKIRR 710
            + Y+E  K   K +R
Sbjct: 1063 DNYKEMAKKRLKKKR 1077

Length = 1077

>gnl\|CDD\|218343 pfam04950, DUF663, Protein of unknown function (DUF663)	Back alignment and domain information

>gnl\|CDD\|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		714
COG5192		1077	BMS1 GTP-binding protein required for 40S ribosome	100.0
PF04950		297	DUF663: Protein of unknown function (DUF663); Inte	100.0
KOG1980		754	consensus Uncharacterized conserved protein [Funct	100.0
COG5177		769	Uncharacterized conserved protein [Function unknow	100.0
KOG1951		115	consensus GTP-binding protein AARP2 involved in 40	99.51
KOG0461		522	consensus Selenocysteine-specific elongation facto	94.49
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	80.55

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=2.9e-123  Score=1008.51  Aligned_cols=572  Identities=31%  Similarity=0.548  Sum_probs=498.5

Q ss_pred             HHhhhcccc-ccCchhhhccCCCCCchhhccccc-cC-CC--CC--CCCCCCCCccccccCcccccCC-C-CCCCCCccc
Q 005101           85 LKLTKSSLR-RCANLIQLVYGKSTSTSETLSKEV-QD-SI--EG--EESDEDEFFKPKVEGNKLREGL-D-SGIVNTDDC  155 (714)
Q Consensus        85 ~~~~~~~~~-r~~nL~klvYg~~~~~~~~~~~~~-~~-~~--e~--~~~~~~~fFk~~~~~~~~~e~~-~-~~~~~~~d~  155 (714)
                      +++|.|++. |..|+++++|+++++|++|+..|+ ++ .+  ++  .++++++||++++..+.+  .. + ....+ -..
T Consensus       487 ~kl~~sqs~kr~~ni~ki~y~e~lspeeci~e~kge~~~s~e~~~v~~D~~edff~vsk~~n~~--~s~~~ek~~~-~~f  563 (1077)
T COG5192         487 SKLAYSQSGKRGRNIQKIFYDESLSPEECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVANES--ISSNHEKLME-SEF  563 (1077)
T ss_pred             hhhhhhhcccccccccceeccccCCHHHHHHHhccccccccccccccccCchhhhhhhhhcccc--cccchhhhch-hHH
Confidence            456666654 567999999999999999999998 31 11  12  346777899976544432  10 0 11111 112


Q ss_pred             ccccccccccCCCchHhHHHHhhhcccCccchhhhhccccCCCCCCCCCcccccCCCcccccCccccCCCCCCC-CC---
Q 005101          156 SKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNS-GC---  231 (714)
Q Consensus       156 ~~~~~~~~~~~W~~ee~~~~ir~~FvTg~w~~~~~~d~~~~~~~~~~~~d~e~~GdFEDLEtge~~~~~~~~~~-~~---  231 (714)
                      +.+     ...|+   .++.|+.||.++...+.. ++      .++. -.|++.|+|||||..|.....+.+++ +.   
T Consensus       564 e~L-----~kkw~---s~~~lk~RF~~~~~lds~-eg------~EEl-~qd~E~gn~ed~~d~e~~~d~e~ees~G~s~t  627 (1077)
T COG5192         564 EEL-----KKKWS---SLAQLKSRFQKDATLDSI-EG------EEEL-IQDDEKGNFEDLEDEENSSDNEMEESRGSSVT  627 (1077)
T ss_pred             HHH-----HHHHh---hHHHHHHHhhcccccccc-cc------hhhh-hhchhccCcccccccccccccchhhccCCccc
Confidence            333     57895   489999999998765321 22      1111 13455789999998776543221111 10   


Q ss_pred             --CC--CCccc-hHHHHHHHHHHHHHhhhhhcccCCCCCcchhhccccccccCCCCCCccchHHHHHHHHHHHHHhhHHH
Q 005101          232 --EG--IENED-ESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAE  306 (714)
Q Consensus       232 --~~--~~~~~-e~~~~~~~~kK~~lk~~F~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~~yd~~K~e~~~q~~~N~~e  306 (714)
                        ++  .++-+ +.+++.+++||++|+.+|+.+..+                 +++..+.+||+.+|+.+++|+.||+.|
T Consensus       628 ~~~~e~~~e~~~e~ErE~na~kKE~lr~~Fe~eer~-----------------d~e~~d~dwy~~eK~ki~~ql~inr~e  690 (1077)
T COG5192         628 AENEESADEVDYETEREENARKKEELRGNFELEERG-----------------DPEKKDVDWYTEEKRKIEEQLKINRSE  690 (1077)
T ss_pred             ccchhhccccchHHHhhhhhhhhhhhhcceeehhcc-----------------CccccccchHHHHHHHHHHHHhhhhhh
Confidence              11  11123 778999999999999999987753                 233455679999999999999999999


Q ss_pred             hcCCCHHHHHHhcCCCCCcEEEEEEeecChhhhhccCCCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEE
Q 005101          307 LNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIV  386 (714)
Q Consensus       307 f~~~d~e~R~~~EG~~~G~YVrI~I~~VP~e~v~~fdp~~PlIlgGLl~~E~k~~vv~~riKRhrw~~~kiLKSkDpLIf  386 (714)
                      |++|++++|+.+|||++|.||||+|+.||.+|+.+|+|.+|||+|||||.|.++|+||++|+|||| |++|||++|||||
T Consensus       691 ~e~M~Pe~r~~Ieg~raG~YVriv~~~vP~efv~~fn~r~piV~GGlLp~E~~~giVq~rikrhrW-hKKILKTNdPlif  769 (1077)
T COG5192         691 FETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRW-HKKILKTNDPLIF  769 (1077)
T ss_pred             hhhcCCcceeEeecccccceEEEEeccCCHHHHhhcCCCCcEEeccccchhhhhhhhhhHHHHhHH-HHHHhccCCCeEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             EeeeeeeeeeeeeeecCCCccceeeeecCCCceEEEEEEeecCCCCceEEEEEeccCCCCCeEEEEEEEeecccCceeEE
Q 005101          387 SIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIK  466 (714)
Q Consensus       387 siGwRRFqt~PIyS~~d~n~R~K~lKYtpeh~~c~ATfyGPit~p~tpvlafq~~s~~~~~frI~ATG~vl~~D~sr~Iv  466 (714)
                      |+|||||||+||||+.|+.+|+|||||||+||||.+|||||+++||||||++|+.   ..+|||+|+|+|.++|.+..||
T Consensus       770 S~GWRRFQsiPvys~~DsrTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~Vqse---~g~frv~a~g~i~dv~~~~~lv  846 (1077)
T COG5192         770 SVGWRRFQSIPVYSMKDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSE---KGDFRVLALGTITDVNGDAKLV  846 (1077)
T ss_pred             EechhhhcccceeeecchhhhhhhhhcCccceeeeeeeecCccCCCCCceeEEec---CCceEEEEeeeeEeccccHHHH
Confidence            9999999999999999999999999999999999999999999999999999984   4569999999999999999999


Q ss_pred             EeEEEeeeeeEEeecceEEeccCCChhhhcccccccccccccCCCCcccCCCCCCeeEEEEeccccccCCEEEEecceec
Q 005101          467 KKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADV  546 (714)
Q Consensus       467 KKlkLtG~P~KI~K~TAfIr~MF~s~lEV~~Fkgkk~L~tk~G~rG~IKeslGthG~FKAtFedkI~~sDiVfLrlwkrV  546 (714)
                      |||+|+|||++|++||||||+||+|.+||++|+|.. |++.+|+||+||.|+|.+|++||.|+++|+|||||.||+|+||
T Consensus       847 kklklvg~p~qi~qnt~fvrdmfts~lev~kfega~-lk~vsglrgqvk~~~~k~g~yra~fe~kmlmsdii~lr~~~pv  925 (1077)
T COG5192         847 KKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGAS-LKAVSGLRGQVKGPHGKNGEYRAVFEGKMLMSDIITLRCFVPV  925 (1077)
T ss_pred             hhhhhccCcHHHhhhhHhHHHhhhhhhHHHhhcccc-eeeeccccccccCccCCCccchheeccchhhhheeeEEeeeee
Confidence            999999999999999999999999999999999986 8899999999999999999999999999999999999999999


Q ss_pred             ccCcccccccccCCCCCccccccccHHHHHHHcCCCCCCCCCCCCccccCCCCCCCCCCCChhhHhcCCCCCCCCCCCCC
Q 005101          547 EIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGR  626 (714)
Q Consensus       547 ~pk~fynPvt~~l~~~~~~W~gmrt~~elR~e~~i~~p~~~dS~Yk~ieR~~r~fnpl~iPk~Lq~~LPf~skpK~~~~~  626 (714)
                      .+++||+||+|||+    .|+|+|.++|||..+|+.+|.++||.|-.++|..++|+.+.+|+.+|+.|||+        +
T Consensus       926 ~v~r~~~pv~~ll~----~wrglr~~~eir~sl~l~~~~~p~~~~~~~e~~~~~~~~~~~pr~ie~~lp~~--------k  993 (1077)
T COG5192         926 EVHRIFIPVDNLLG----KWRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIESKLPLD--------K  993 (1077)
T ss_pred             EEEEeeccHHHHHH----HHhhhHHHHHHHHHhCCCCCCCCCccchhhhhhccccccccCcHhHHhhCCcc--------h
Confidence            99999999999997    69999999999999999999999999999999999999999999999999998        5


Q ss_pred             CCccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005101          627 KRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMK  706 (714)
Q Consensus       627 ~~~~~~~~~avv~~p~ekk~~~l~q~l~ti~~~k~~krk~k~~~~~~~~~k~~~k~e~~~~~~~ke~~K~~~r~~gk~~~  706 (714)
                      +..+++.||++++.|.|++....+|..-++.+-|..++|++++-.++++.++.+|.|+++.+|.|+.+++.|...||++-
T Consensus       994 r~~~~~srr~~~~~~~e~r~k~~ik~~i~~~r~kd~~~ke~~~s~~r~k~~~i~k~e~er~qr~r~~~~d~~~e~~kkr~ 1073 (1077)
T COG5192         994 RSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRL 1073 (1077)
T ss_pred             hhhhheeeeeeccCChhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            56688999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             hhh
Q 005101          707 KIR  709 (714)
Q Consensus       707 ~~~  709 (714)
                      ++.
T Consensus      1074 kk~ 1076 (1077)
T COG5192        1074 KKK 1076 (1077)
T ss_pred             hcc
Confidence            654

>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus	Back alignment and domain information

>KOG1980 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5177 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1951 consensus GTP-binding protein AARP2 involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		714
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 56.4 bits (135), Expect = 3e-08
 Identities = 67/516 (12%), Positives = 136/516 (26%), Gaps = 150/516 (29%)

Query: 42  TVMRVRMMTTTVMRGEDENNHNVDNHLSSGTEEREDNDDMENELKLTKSSLRRCANLIQL 101
           T  R   M T +   + +  +N +   +     R        +L+     LR   N++  
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---PYLKLRQALLELRPAKNVL-- 154

Query: 102 VYG-----KSTSTSETL-SKEVQDSIE--------GEESDEDEFFKPKVEGNKLREGLDS 147
           + G     K+    +   S +VQ  ++           +  +   +      KL   +D 
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---QKLLYQIDP 211

Query: 148 GIVNTDDCSK--IKSYEDLKSWK----QEEVYES----IRDRFVTGDWSKAAQRNQVSKG 197
              +  D S         +++      + + YE+    + +  V    +      +    
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--V---QNA-----KAWNA 261

Query: 198 -----K----SEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAVEERRLK 248
                K    +      D +        + +              +   DE         
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS---------MTLT-PDEV-------- 303

Query: 249 KLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIG-LVDQMKEEIEFRKQMNIAEL 307
             SL  K+ +     + P E                 I   +       +  K +N  +L
Sbjct: 304 -KSLLLKY-LDCRPQDLPREV---LTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKL 355

Query: 308 NDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCH--------PVLVGGI---GLG 356
             + E +   LE               P E  + FD           P ++  +    + 
Sbjct: 356 TTIIESSLNVLE---------------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 357 EQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAI--------EDRSGRH 408
           + +V  +  +L      HK  L  + P        +  TI + +I        E+    H
Sbjct: 401 KSDVMVVVNKL------HKYSLVEKQP--------KESTISIPSIYLELKVKLENEYALH 446

Query: 409 RML--KYTPEHMHCLATFWGPLAPPQTGVV--------AVQNLSNNQASFRIAATAVVLE 458
           R +   Y              + P                         FR     V L+
Sbjct: 447 RSIVDHYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR----MVFLD 499

Query: 459 FNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLE 494
           F     +++KI+           +  I +     L+
Sbjct: 500 FRF---LEQKIRHDSTAW---NASGSILNTLQ-QLK 528

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		714
1wb1_A		482	Translation elongation factor SELB; selenocysteine	99.78

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*	Back alignment and structure

Probab=99.78  E-value=1.3e-19  Score=197.85  Aligned_cols=217  Identities=15%  Similarity=0.127  Sum_probs=150.7

Q ss_pred             hcCCCCCcEEEEEEeecChhhhhccCCCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeeeee
Q 005101          318 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIP  397 (714)
Q Consensus       318 ~EG~~~G~YVrI~I~~VP~e~v~~fdp~~PlIlgGLl~~E~k~~vv~~riKRhrw~~~kiLKSkDpLIfsiGwRRFqt~P  397 (714)
                      ++.+.+|+.|.|.+.++..+-++   .+.-| ++.-.+- .-..-+.+++.--.. ++.+|++..++.|++|..+.....
T Consensus       253 v~~a~~G~~v~~~l~~~~~~~i~---~Gdvl-~~~~~~~-~~~~~~~a~v~~l~~-~~~~l~~g~~~~l~~~t~~~~~~v  326 (482)
T 1wb1_A          253 VMEAKAGDRVGMAIQGVDAKQIY---RGXIL-TSKDTKL-QTVDKIVAKIKISDI-FKYNLTPKMKVHLNVGMLIVPAVA  326 (482)
T ss_dssp             BCCCCSSCCCCEECSSCCSSCCC---SSCBC-CCTTCCC-CCEEEEEECCCCCSS-CCSCCCSSCEEEEEETTEEEEEEE
T ss_pred             eeEecCCCEEEEEecCCCHhhcc---ccceE-ecCCCCC-ceeeEEEEEEEEecc-CCcccCCCCEEEEEEcccEEEEEE
Confidence            45577899999988876432211   11111 0110000 011122222222222 457999999999999999987765


Q ss_pred             eeee---cCCCccceeeeecCC--CceEEEEEEeecCCCCceEEEEEeccCCCCCeEEEEEEEeecccCceeEEEeEEEe
Q 005101          398 VYAI---EDRSGRHRMLKYTPE--HMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLV  472 (714)
Q Consensus       398 IyS~---~d~n~R~K~lKYtpe--h~~c~ATfyGPit~p~tpvlafq~~s~~~~~frI~ATG~vl~~D~sr~IvKKlkLt  472 (714)
                      ..-.   -|.++.+..-++...  ...|...+-.|+++.+-+-++++...+.....|.+|.|.|+++.+    +++++|.
T Consensus       327 ~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~~tvg~G~v~~~~~----~~~l~v~  402 (482)
T 1wb1_A          327 VPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTLRIXGHGLIEEFKP----IKDLNIK  402 (482)
T ss_dssp             EEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSCCCCCBCCEEECCC----GGGSCCC
T ss_pred             EEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCceEeeEEEEEeccc----chhceee
Confidence            4432   222333332334433  346777888999987666566666221123468999999999877    4666665


Q ss_pred             eeeeE-----EeecceEEeccCCChhhhcccccccccccccCC-CCcccCCCCCCeeEEEEeccccccCCEEEEeccee
Q 005101          473 GYPCK-----IFKKTALIKDMFTSDLEVAQCEGKEAAKEEIGN-QPKRKGGQPREGIARCTFEDRILMSDIVFMRGWAD  545 (714)
Q Consensus       473 G~P~K-----I~K~TAfIr~MF~s~lEV~~Fkgkk~L~tk~G~-rG~IKeslGthG~FKAtFedkI~~sDiVfLrlwkr  545 (714)
                      ..+.|     ++++||+||+||++..+|+||.|.+ +.+.+|. +|+|++|.|++|+|||+|+++|.+||+|||++|+|
T Consensus       403 k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~-v~~~~g~~~G~I~~~fg~~G~~~~~f~~~~~~~d~v~~~~~~~  480 (482)
T 1wb1_A          403 KEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEE-ISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKVILNRLRR  480 (482)
T ss_dssp             CCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCC-CEETTTCCCBCCCCCBTTTTBBCCCBSSCCCSSCEEEEECCCS
T ss_pred             ehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcE-EEEcCCceEEEEeccCCCCceEEEEecCCCCCCCeeeeehhhc
Confidence            55555     7889999999999999999999987 7789999 99999999999999999999999999999999987

PyMOL of 1wb1

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		714
d1wb1a2		79	Elongation factor SelB, domains 2 and 4 {Methanoco	93.85

>d1wb1a2 b.43.3.1 (A:390-468) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]}	Back information, alignment and structure

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor SelB, domains 2 and 4
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.85  E-value=0.026  Score=46.31  Aligned_cols=67  Identities=22%  Similarity=0.215  Sum_probs=60.2

Q ss_pred             eeEEeecceEEeccCCChhhhcccccccccccccC-CCCcccCCCCCCeeEEEEeccccccCCEEEEec
Q 005101          475 PCKIFKKTALIKDMFTSDLEVAQCEGKEAAKEEIG-NQPKRKGGQPREGIARCTFEDRILMSDIVFMRG  542 (714)
Q Consensus       475 P~KI~K~TAfIr~MF~s~lEV~~Fkgkk~L~tk~G-~rG~IKeslGthG~FKAtFedkI~~sDiVfLrl  542 (714)
                      -.||-|..++|-++=.|..-..+..|-+ +++..+ +.|.||...||.|+.-|-|++.+...|.|.|.-
T Consensus         7 ~i~i~K~r~~IegLA~sK~~aEkLIGe~-v~i~~k~i~Gkik~TfGTkG~l~adF~geV~n~dkV~L~R   74 (79)
T d1wb1a2           7 KVKIDKGRTVIDGLAQSKVAAEKLIGEE-ISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKVILNR   74 (79)
T ss_dssp             EEECCSSCCEETTSCSSHHHHHHSCSCC-CEETTTCCCBCCCCCBTTTTBBCCCBSSCCCSSCEEEEEC
T ss_pred             cEEEecCcEEeeecccchhHHHhhcCcE-EEecCCceEEEEeccccCceEEEEEeccccCCCceehhhh
Confidence            4688999999999999999999999966 556666 699999999999999999999999999999863

PyMOL of d1wb1a2