Citrus Sinensis ID: 005106
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 714 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZQX6 | 888 | ETO1-like protein 1 OS=Ar | yes | no | 0.994 | 0.799 | 0.717 | 0.0 | |
| O65020 | 951 | Ethylene-overproduction p | no | no | 0.928 | 0.697 | 0.483 | 1e-178 | |
| Q9LV01 | 925 | ETO1-like protein 2 OS=Ar | no | no | 0.928 | 0.716 | 0.425 | 1e-146 |
| >sp|Q9ZQX6|ETOL1_ARATH ETO1-like protein 1 OS=Arabidopsis thaliana GN=EOL1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/715 (71%), Positives = 608/715 (85%), Gaps = 5/715 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MRTF+PSDSCKESQL+ NPQSWLQVERGKLS +S ++ ESFIKVPEP+ILP+YK
Sbjct: 1 MRTFYPSDSCKESQLDSLNPQSWLQVERGKLSSSASSSAPLCR-ESFIKVPEPQILPHYK 59
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
P+DYVEVLAQIHEEL+ CPLQERS LYLLQ+QVF+GLGE KL RRSL+ AWQ+A+TVHEK
Sbjct: 60 PLDYVEVLAQIHEELDTCPLQERSILYLLQYQVFRGLGETKLRRRSLQSAWQEATTVHEK 119
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ- 179
+VFG+WL+YEKQGEE+I DLL +C K +EF P+DIAS+ A S E S+ ++
Sbjct: 120 VVFGSWLRYEKQGEEVITDLLSSCGKYSEEFVPLDIASYFPA--TTASSPEAASVKTNRS 177
Query: 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
V +NVVF+I EEKI C R+K A+LSAPF AML G+F ESL ++ID+SEN++S S +R++
Sbjct: 178 VSKNVVFKIGEEKIACQRRKIASLSAPFHAMLYGNFTESLLDEIDMSENHVSSSAMRVVR 237
Query: 240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
DFSV G L GV+ NLLLE+L+FANKFCCERLKDACDR+LASL++S E A+ELM +A+EEN
Sbjct: 238 DFSVVGVLIGVSKNLLLEVLVFANKFCCERLKDACDRELASLISSMECAIELMDFALEEN 297
Query: 300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
SP+LA SCLQVFL E+PD LNDERVVE+ + NR S M G A FSLY LSEV+M +D
Sbjct: 298 SPILASSCLQVFLYEMPDSLNDERVVEVLTRVNRSQVSTMAGKAPFSLYSCLSEVSMCID 357
Query: 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
PRSD+T+ FLE+L++ AE DRQ++L FH+LGC+RLLRKEY EAE FE A N GH+YS
Sbjct: 358 PRSDRTLGFLEKLVDFAENDRQQVLGFHRLGCMRLLRKEYREAEEAFETAFNLGHVYSAT 417
Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTP-LGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
GLARLGYI+GH+LWAYEKL+SVISSV+P LGWMYQERS YCEGDK+ EDL+KAT LDPTL
Sbjct: 418 GLARLGYIQGHRLWAYEKLSSVISSVSPPLGWMYQERSFYCEGDKKLEDLEKATELDPTL 477
Query: 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538
+YPYMYRA + M+KQN +AAL EINRILGFKLALECLE+RFC +L ++DY+AAL D+QA
Sbjct: 478 TYPYMYRAVTRMSKQNAKAALEEINRILGFKLALECLEIRFCLYLGMDDYEAALRDIQAA 537
Query: 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
LTL PDYRMF+G+VA QL LV EH++NWT ADCW+QLY++WS+VDDIGSLSVIYQMLE
Sbjct: 538 LTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWMQLYEKWSNVDDIGSLSVIYQMLE 597
Query: 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
SDA KGVLYFRQSLLLLRLNCPEAAMRSLQLAR+HA+SDHERLVYEGWILYDT HCEEGL
Sbjct: 598 SDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHASSDHERLVYEGWILYDTGHCEEGL 657
Query: 659 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 713
+KA+ESI +KRSFEA+FL+AYALA+SS D S SSTVVSLLEDALKCPSDRLRKGQ
Sbjct: 658 QKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVVSLLEDALKCPSDRLRKGQ 712
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Possible regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65020|ETO1_ARATH Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 626 bits (1614), Expect = e-178, Method: Compositional matrix adjust.
Identities = 326/674 (48%), Positives = 449/674 (66%), Gaps = 11/674 (1%)
Query: 52 EPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAW 111
EP+I P K VD VE +AQ++ +E C E+S YL Q +F+G+ + KL RRSLR +
Sbjct: 101 EPQIDPCLKFVDLVEKMAQVYRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSR 160
Query: 112 QKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTD-----INV 166
Q A VH K+V +WL++E++ +ELI ++C E + S +
Sbjct: 161 QHAVDVHAKVVLASWLRFERREDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCVC 220
Query: 167 AGSHETVSMSGDQ------VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC 220
+G+ + M+ D+ V ++ F I +E++ C R K A+LS PF AML G F E
Sbjct: 221 SGASRSEMMNEDECSTSQEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKR 280
Query: 221 EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
I+ ++N IS G+R FS T L+ PN++LE+L AN+FCC+ LK ACD LA
Sbjct: 281 ATINFTQNGISVEGMRAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAH 340
Query: 281 LVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMV 340
LV S ++A+ L+ Y +EE + +L +CLQVFLRELP +++ V++IF A + R +
Sbjct: 341 LVNSLDEAMLLIEYGLEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASL 400
Query: 341 GLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYD 400
G ASF+LY LS++AM D +S+ TV LERL+E A ++ LA+HQLG V L RKEY
Sbjct: 401 GHASFTLYFFLSQIAMEDDMKSNTTVMLLERLVECAVDSWEKQLAYHQLGVVMLERKEYK 460
Query: 401 EAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460
+A+ F AAV AGH+YS+ G+AR + + H+ AY+ +NS+IS GWM+QERSLYC
Sbjct: 461 DAQRWFNAAVEAGHLYSLVGVARTKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCS 520
Query: 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFC 520
G ++ DLD AT DPTL++PY +RA +L+ + AA+AE+N+ILGFK + +CLE+R
Sbjct: 521 GKEKLLDLDTATEFDPTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCLEMRAW 580
Query: 521 FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580
+ +EDY+ AL D++A+LTL P++ MF ++ + L+R W+ ADCW+QLYDR
Sbjct: 581 ISIGMEDYEGALKDIRALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDR 640
Query: 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640
WSSVDDIGSL+V++ ML +D K +L FRQSLLLLRLNC +AAMRSL+LAR H+ S+HER
Sbjct: 641 WSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHER 700
Query: 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLED 700
LVYEGWILYDT H EE L KAEESI ++RSFEAFFLKAYALADS+ D S+ V+ LL++
Sbjct: 701 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQE 760
Query: 701 ALKCPSDRLRKGQV 714
ALKCPSD LRKGQ
Sbjct: 761 ALKCPSDGLRKGQA 774
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Essential regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV01|ETOL2_ARATH ETO1-like protein 2 OS=Arabidopsis thaliana GN=EOL2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 518 bits (1334), Expect = e-146, Method: Compositional matrix adjust.
Identities = 290/681 (42%), Positives = 418/681 (61%), Gaps = 18/681 (2%)
Query: 52 EPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAW 111
EP + KP+D VE L+ ++ +E E S LYL Q+ V + LG+AKL+RR L A
Sbjct: 60 EPPLDSYLKPIDLVESLSNLYRRIESSSESEASMLYLEQYAVLRSLGDAKLLRRCLLNAR 119
Query: 112 QKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSH- 170
+ A V K+VF AWL++ ++ EL+ ++C+ E + +++ G
Sbjct: 120 RHAIDVPCKVVFSAWLRFFRREHELVGVESMDCNGLASECPKTSLTHGCDLNVDDEGCEC 179
Query: 171 ETV----------------SMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGS 214
TV SG + ++ F + EK +C R + AALS PF AML GS
Sbjct: 180 STVCEDEFGSDDVKISKADEFSGLDEVSDISFCVGSEKAKCVRSRIAALSRPFEAMLYGS 239
Query: 215 FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDAC 274
F+ES +ID SEN IS + ++ +S ++ + E+L A+KFCC+ LK C
Sbjct: 240 FVESTTSEIDFSENGISIEAMLALNIYSRIKRVDLFRVETVFELLQLASKFCCDDLKSEC 299
Query: 275 DRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQ 334
+ +LA+ V + A+ + YA+EE + +L +CLQVFLRELP L++ +V+ F + +
Sbjct: 300 EARLAASVTDLDKALTFVEYALEERTTLLLSACLQVFLRELPQSLHNPKVMRFFCSSEAK 359
Query: 335 HRSIMVGL-ASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVR 393
+ +G F LY LS+V M +D + LER E A T+ Q+ L+ HQ+GCV
Sbjct: 360 EQLAFLGSECVFLLYYFLSQVGMEEKLTTDTMLILLERTREFARTNWQKALSLHQMGCVL 419
Query: 394 LLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQ 453
RK+Y A+ F A + GH+YS+AG++R Y +G + AY +N +IS+ P GWMYQ
Sbjct: 420 FERKDYKAAQFHFRLASSLGHVYSLAGVSRTEYKQGKRYSAYRLMNFLISNHKPHGWMYQ 479
Query: 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE 513
ERSLY G ++ +DL AT LDPTLS+PY YRA ++ ++ A EI+R++ FKL+ E
Sbjct: 480 ERSLYNVGVEKLKDLATATELDPTLSFPYKYRAVMKFEQKQIKEAFQEIDRLIQFKLSPE 539
Query: 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573
CLELR +LA D ++ L D++A+L+L P+Y +F G++ + L + I+ + ADC
Sbjct: 540 CLELRAWLYLATGDRESCLRDLRAVLSLEPNYVVFGGKMRDDLVEALTAQCIEVESEADC 599
Query: 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633
W++L+DRWS+VDD+ SL+V++QML++D K L FRQSLLLLRLNC AAMR L++A
Sbjct: 600 WVRLFDRWSAVDDVASLAVVHQMLQNDPSKNFLRFRQSLLLLRLNCQGAAMRCLRMAWNL 659
Query: 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 693
A S+ ERLVYEGW+LYD + EE L KAEE+I ++RSFEAFFLKAYALAD + D+ S
Sbjct: 660 ATSEAERLVYEGWLLYDMGYVEETLTKAEEAISIQRSFEAFFLKAYALADKNLDADEISC 719
Query: 694 VVSLLEDALKCPSDRLRKGQV 714
VV +LE+ALKCPSD LRKGQ
Sbjct: 720 VVQVLEEALKCPSDGLRKGQA 740
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Potential regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 714 | ||||||
| 359495432 | 886 | PREDICTED: ETO1-like protein 1-like [Vit | 0.995 | 0.802 | 0.827 | 0.0 | |
| 255559841 | 851 | conserved hypothetical protein [Ricinus | 0.997 | 0.836 | 0.812 | 0.0 | |
| 449455250 | 890 | PREDICTED: ETO1-like protein 1-like [Cuc | 0.998 | 0.801 | 0.770 | 0.0 | |
| 449526563 | 890 | PREDICTED: ETO1-like protein 1-like [Cuc | 0.998 | 0.801 | 0.769 | 0.0 | |
| 70780055 | 886 | ethylene overproducer-like 1 [Solanum ly | 0.995 | 0.802 | 0.760 | 0.0 | |
| 350539533 | 886 | ethylene-overproducer1-like protein [Sol | 0.995 | 0.802 | 0.757 | 0.0 | |
| 356572224 | 886 | PREDICTED: ETO1-like protein 1-like [Gly | 0.995 | 0.802 | 0.742 | 0.0 | |
| 356504961 | 888 | PREDICTED: ETO1-like protein 1-like [Gly | 0.995 | 0.800 | 0.749 | 0.0 | |
| 224082686 | 787 | predicted protein [Populus trichocarpa] | 0.855 | 0.776 | 0.810 | 0.0 | |
| 356500164 | 886 | PREDICTED: ETO1-like protein 1-like [Gly | 0.994 | 0.801 | 0.733 | 0.0 |
| >gi|359495432|ref|XP_002280519.2| PREDICTED: ETO1-like protein 1-like [Vitis vinifera] gi|296084480|emb|CBI25039.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1200 bits (3105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/714 (82%), Positives = 644/714 (90%), Gaps = 3/714 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
M+ FPS+SCKE+QLN FNPQSWLQVERGKLSK SS SSSSIES IKVPEP ILP +K
Sbjct: 1 MKNLFPSESCKETQLNAFNPQSWLQVERGKLSKFSS--QSSSSIESLIKVPEPPILPFFK 58
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYVEVLAQIHEELE CP QERS+LYLLQFQVF+GLGE KLMRRSLR AWQ+ASTV EK
Sbjct: 59 PVDYVEVLAQIHEELESCPPQERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQRASTVQEK 118
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
L+FGAWLKYEKQGEELIADLL +C KC QEFGPIDIAS L D N + S+E V M+G+++
Sbjct: 119 LIFGAWLKYEKQGEELIADLLASCGKCAQEFGPIDIASQLPADSNTS-SNEAVVMNGNEI 177
Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
L+ V+FRI +EKI CDRQK A LSAPF AMLNG F ESL EDIDLSENNISPSG+R I +
Sbjct: 178 LKTVIFRIGDEKIVCDRQKIAGLSAPFHAMLNGCFTESLQEDIDLSENNISPSGMRAIHE 237
Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
F +TGSL V P+LLLEILIF NKFCCERLKDAC RKLASLV+SR+DAVEL+ YA+EENS
Sbjct: 238 FCMTGSLGEVPPDLLLEILIFGNKFCCERLKDACGRKLASLVSSRDDAVELIDYALEENS 297
Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
PVLA SCLQVFL ELPDCLND RV+EI S ANRQ RSIMVG ASFSLYC LSEVAM LDP
Sbjct: 298 PVLAASCLQVFLHELPDCLNDNRVLEILSDANRQQRSIMVGPASFSLYCFLSEVAMALDP 357
Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
RSD T CFLERL+ESAE+ RQRLLA HQLGCVRLLRKEYDEAE LFEAA+NAGH+YS+AG
Sbjct: 358 RSDTTACFLERLVESAESSRQRLLACHQLGCVRLLRKEYDEAEQLFEAALNAGHVYSVAG 417
Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
L RLGY+KGHKLW+Y+KL+SVISS TPLGWMYQERSLYCEGDKRWEDL+KAT LDPTL+Y
Sbjct: 418 LVRLGYLKGHKLWSYDKLSSVISSFTPLGWMYQERSLYCEGDKRWEDLEKATELDPTLTY 477
Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
PYMYRA+SLM KQNV+AALAEIN++LGFKLALECLELRFCF+LA+E+Y+AA CDVQAILT
Sbjct: 478 PYMYRAASLMRKQNVQAALAEINQVLGFKLALECLELRFCFYLAVENYEAAFCDVQAILT 537
Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
LSPDYRMFEGRVAASQL MLVREH+++WT ADCWLQLYDRWSSVDDIGSLSVIYQMLESD
Sbjct: 538 LSPDYRMFEGRVAASQLRMLVREHVESWTTADCWLQLYDRWSSVDDIGSLSVIYQMLESD 597
Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
A KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+++HERLVYEGWILYDT HCEEGLRK
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASNEHERLVYEGWILYDTGHCEEGLRK 657
Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQV 714
AEESI +KRSFEAFFLKAYALADSSQD SCSSTVVSLLEDALKCPSDRLRKGQ
Sbjct: 658 AEESIGLKRSFEAFFLKAYALADSSQDPSCSSTVVSLLEDALKCPSDRLRKGQA 711
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559841|ref|XP_002520939.1| conserved hypothetical protein [Ricinus communis] gi|223539776|gb|EEF41356.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1172 bits (3032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/714 (81%), Positives = 640/714 (89%), Gaps = 2/714 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIK-VPEPRILPNY 59
M+T F +SCKESQL+ NPQSWLQVERGKLSKLSS +SSSSS + VPEP +LP +
Sbjct: 1 MKTLFLPESCKESQLDALNPQSWLQVERGKLSKLSSCSSSSSSSIDSLIKVPEPPVLPFF 60
Query: 60 KPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHE 119
KPVDYVEVLAQIHEELE C QERS+LYLLQFQVF+GLGE KLMRRSLR AWQK+STVHE
Sbjct: 61 KPVDYVEVLAQIHEELESCSPQERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQKSSTVHE 120
Query: 120 KLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ 179
K+VFGAWLKYEKQGEELIADLL C KC QEFGPIDI S L D++ + S ET+ + D
Sbjct: 121 KVVFGAWLKYEKQGEELIADLLATCGKCAQEFGPIDIVSQLHIDLSFSAS-ETILTNADS 179
Query: 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
LRNV+F I +EKI CDR+K + LSAPF AMLNG F+ESLCE+ID SENNISP ++IS
Sbjct: 180 KLRNVIFSIGDEKIVCDRKKISGLSAPFHAMLNGCFLESLCENIDFSENNISPFSFKMIS 239
Query: 240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
+FSV GSLN V LLEILIFANKFCCERLKDACDRKLASLV+S+EDAVELM YA++EN
Sbjct: 240 EFSVKGSLNEVPLENLLEILIFANKFCCERLKDACDRKLASLVSSKEDAVELMEYALQEN 299
Query: 300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
SPVLA SCLQVFL ELPDCLNDERVVEIFSHA +Q R IMVG ASFSLYCLLSEVAMNLD
Sbjct: 300 SPVLAASCLQVFLHELPDCLNDERVVEIFSHAGKQERMIMVGAASFSLYCLLSEVAMNLD 359
Query: 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
PRS+KT CFLERL+ESAET+RQ+LLAFHQLGCVRLLRKEYDEAE LFEAA++AGH+YS++
Sbjct: 360 PRSNKTACFLERLVESAETNRQKLLAFHQLGCVRLLRKEYDEAERLFEAALSAGHLYSVS 419
Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLS 479
GLARLG +KGH+LWAY+KL+SVISSVTPLGWMYQERSLYCEGDK+ EDL KAT LDPTL+
Sbjct: 420 GLARLGCVKGHRLWAYDKLSSVISSVTPLGWMYQERSLYCEGDKKCEDLQKATELDPTLT 479
Query: 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539
YPYM+RA+SLM KQNV+AALAEINR+LGFKLALECLELRFCF+LALEDYQAALCDVQAIL
Sbjct: 480 YPYMFRAASLMRKQNVQAALAEINRVLGFKLALECLELRFCFYLALEDYQAALCDVQAIL 539
Query: 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599
TLSPDYRMFEGRVAA QL LVREH+ NWT ADCW+QLY+RWSSVDDIGSLSVIYQMLES
Sbjct: 540 TLSPDYRMFEGRVAAFQLRTLVREHVGNWTTADCWIQLYERWSSVDDIGSLSVIYQMLES 599
Query: 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659
+APKGVLYFRQSLLLLRLNCPEAAM+SLQLARQHA+++HERLVYEGWILYDT HCEEGLR
Sbjct: 600 EAPKGVLYFRQSLLLLRLNCPEAAMQSLQLARQHASTEHERLVYEGWILYDTGHCEEGLR 659
Query: 660 KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 713
KAEESI++ RSFEAFFLKAYALADSSQD SCSSTVVSLLEDALKCPSDRLRKGQ
Sbjct: 660 KAEESIKINRSFEAFFLKAYALADSSQDPSCSSTVVSLLEDALKCPSDRLRKGQ 713
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455250|ref|XP_004145366.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] gi|449473087|ref|XP_004153780.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/716 (77%), Positives = 622/716 (86%), Gaps = 3/716 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MRTFFPS+SCKE+QLN F PQ+WLQVERGKLSKLS +SSSSSIES IKVPEP ILP +K
Sbjct: 1 MRTFFPSESCKETQLNAFYPQAWLQVERGKLSKLSL-HSSSSSIESLIKVPEPPILPYFK 59
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYVEVLAQIHEELE CP ERS+LYLLQFQVF+GLGE KLMRRSLR AWQKAS VHEK
Sbjct: 60 PVDYVEVLAQIHEELESCPAHERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQKASIVHEK 119
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASH--LQTDINVAGSHETVSMSGD 178
L+FGAWLKYEKQGEE+I DLL C+KC QE+GP+DI++ L T ++ ++ + G
Sbjct: 120 LIFGAWLKYEKQGEEIITDLLATCEKCAQEYGPVDISTQFPLDTGVDAGNPYDNCAADGK 179
Query: 179 QVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRII 238
+ ++V F+I++E I CDR+K + LSAPF AMLNG F ES E IDLSENN+SPSG+R I
Sbjct: 180 PISKHVTFKINDEDIVCDREKISGLSAPFHAMLNGCFTESNREVIDLSENNLSPSGMRAI 239
Query: 239 SDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEE 298
+FS TG+L V+P+LLLEILIFANKFCCERLKD CDRKLASL ++REDAVELM YA+EE
Sbjct: 240 REFSNTGNLGEVSPDLLLEILIFANKFCCERLKDDCDRKLASLASTREDAVELMDYALEE 299
Query: 299 NSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNL 358
+ +LA SCLQ FL +LPDCL+D RVV+IF HANR+ RSIMVG ASFSLYCLLSEV +NL
Sbjct: 300 SCHILAASCLQTFLNDLPDCLSDHRVVDIFMHANREQRSIMVGHASFSLYCLLSEVFINL 359
Query: 359 DPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSI 418
DPRS+ T CFLERL+E AETDRQRL A HQLGCVRLLRKEYDEA+ LFEAA NAGHIYS+
Sbjct: 360 DPRSENTACFLERLVEFAETDRQRLFACHQLGCVRLLRKEYDEAKRLFEAAFNAGHIYSV 419
Query: 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
GLARL I G+K W+ + L SVIS+ PLGWMYQERSLYC+ +K+ DL+KAT LDPTL
Sbjct: 420 VGLARLSQINGNKQWSSDSLTSVISTGVPLGWMYQERSLYCDANKKLADLEKATDLDPTL 479
Query: 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538
+YPYMYRA+SLM KQ+V AALAEINRILGFKLALECLELRFCF+LALEDYQAA+CD+QAI
Sbjct: 480 TYPYMYRAASLMRKQDVHAALAEINRILGFKLALECLELRFCFYLALEDYQAAICDIQAI 539
Query: 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
LTLSPDYRMFEG+ AASQL LVREH+ NWT ADCW+QLYDRWSSVDDIGSLSVIYQMLE
Sbjct: 540 LTLSPDYRMFEGKAAASQLRTLVREHVSNWTTADCWIQLYDRWSSVDDIGSLSVIYQMLE 599
Query: 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
SDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+S+HERLVYEGWILYDT HCEEGL
Sbjct: 600 SDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHCEEGL 659
Query: 659 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQV 714
+KAEESI++KRSFEAFFLKAYALADSSQD SCSSTV+SLLEDALKCPSDRLRKGQ
Sbjct: 660 QKAEESIKIKRSFEAFFLKAYALADSSQDPSCSSTVISLLEDALKCPSDRLRKGQA 715
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526563|ref|XP_004170283.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1113 bits (2880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/716 (76%), Positives = 621/716 (86%), Gaps = 3/716 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MRTFFPS+SCKE+QLN F PQ+WLQVERGKLSKLS +SSSSSIES IKVPEP ILP +K
Sbjct: 1 MRTFFPSESCKETQLNAFYPQAWLQVERGKLSKLSL-HSSSSSIESLIKVPEPPILPYFK 59
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYVEVLAQIHEELE CP ERS+LYLLQFQVF+GLGE KLMRRSLR AWQKAS VHEK
Sbjct: 60 PVDYVEVLAQIHEELESCPAHERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQKASIVHEK 119
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASH--LQTDINVAGSHETVSMSGD 178
L+FGAWLKYEKQGEE+I DLL C+KC QE+GP+DI++ L T ++ ++ + G
Sbjct: 120 LIFGAWLKYEKQGEEIITDLLATCEKCAQEYGPVDISTQFPLDTGVDAGNPYDNCAADGK 179
Query: 179 QVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRII 238
+ ++V F+I++E I CDR+K + LSAPF AMLNG F ES E IDLSENN+SPSG+R I
Sbjct: 180 PISKHVTFKINDEDIVCDREKISGLSAPFHAMLNGCFTESNREVIDLSENNLSPSGMRAI 239
Query: 239 SDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEE 298
+FS TG+L V+P+LLLEILIFANKFCCERLKD CDRKLASL ++REDAVELM YA+EE
Sbjct: 240 REFSNTGNLGEVSPDLLLEILIFANKFCCERLKDDCDRKLASLASTREDAVELMDYALEE 299
Query: 299 NSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNL 358
+ +LA SCLQ FL +LPDCL+D RVV+IF HANR+ RSIMVG ASFSLYCLLSEV +NL
Sbjct: 300 SCHILAASCLQTFLNDLPDCLSDHRVVDIFMHANREQRSIMVGHASFSLYCLLSEVFINL 359
Query: 359 DPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSI 418
DPRS+ T CFLERL+E AETDRQRL A HQLGCVRLLRKEYDEA+ LFEAA NAGHIYS+
Sbjct: 360 DPRSENTACFLERLVEFAETDRQRLFACHQLGCVRLLRKEYDEAKRLFEAAFNAGHIYSV 419
Query: 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
GLARL I G+K W+ + L SVIS+ PLGWMYQERSLYC+ +K+ DL+KAT LDPTL
Sbjct: 420 VGLARLSQINGNKQWSSDSLTSVISTGVPLGWMYQERSLYCDANKKLADLEKATDLDPTL 479
Query: 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538
+YPYMYRA+SLM KQ+V AAL EINRILGFKLALECLELRFCF+LALEDYQAA+CD+QAI
Sbjct: 480 TYPYMYRAASLMRKQDVHAALTEINRILGFKLALECLELRFCFYLALEDYQAAICDIQAI 539
Query: 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
LTLSPDYRMFEG+ AASQL LVREH+ NWT ADCW+QLYDRWSSVDDIGSLSVIYQMLE
Sbjct: 540 LTLSPDYRMFEGKAAASQLRTLVREHVSNWTTADCWIQLYDRWSSVDDIGSLSVIYQMLE 599
Query: 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
SDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+S+HERLVYEGWILYDT HCEEGL
Sbjct: 600 SDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHCEEGL 659
Query: 659 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQV 714
+KAEESI++KRSFEAFFLKAYALADSSQD SCSSTV+SLLEDALKCPSDRLRKGQ
Sbjct: 660 QKAEESIKIKRSFEAFFLKAYALADSSQDPSCSSTVISLLEDALKCPSDRLRKGQA 715
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|70780055|gb|AAZ08351.1| ethylene overproducer-like 1 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/714 (76%), Positives = 621/714 (86%), Gaps = 3/714 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MRTFFPS+SCKE+ L NPQSWLQVERGKL+K+SS S+SSI+S IKVPEP ILP +K
Sbjct: 1 MRTFFPSESCKETHLKSINPQSWLQVERGKLAKISS--ESASSIDSLIKVPEPPILPFFK 58
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYV+VLA+IHEELE C QERS+LYLLQFQVFKGLGE KLMRRSLR AW KASTV+EK
Sbjct: 59 PVDYVQVLAKIHEELESCSPQERSNLYLLQFQVFKGLGEVKLMRRSLRAAWSKASTVYEK 118
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
LVFGAWLKYEKQ EELI+DLL +C KC +EFG IDIAS + ++ SH ++ + D
Sbjct: 119 LVFGAWLKYEKQDEELISDLLSSCGKCAKEFGAIDIASEMPAYKKLS-SHGVITTNEDSC 177
Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
R V FRI +EKI CDRQK A+LSAPF MLNG F ES CE+IDLSENNISP +R+I++
Sbjct: 178 PRTVSFRIADEKIACDRQKIASLSAPFHTMLNGCFTESFCEEIDLSENNISPLAMRLINE 237
Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
FS TG LN V+P+LLLEIL+FANKFCCE LKDACDRKLASL++ R+DA+EL+ A+EENS
Sbjct: 238 FSSTGLLNEVSPDLLLEILVFANKFCCESLKDACDRKLASLISCRQDALELLECALEENS 297
Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
PVLA SCLQVFLRELPD L D +VVE+ S+ RQ RSIM+G ASFSLYCLLSEV+MNLDP
Sbjct: 298 PVLAASCLQVFLRELPDSLKDSQVVELLSNTTRQQRSIMIGPASFSLYCLLSEVSMNLDP 357
Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
RSD++V FL L++SAET +Q+++A+H+LGCV+ LR+E DEAE LFEAA N GH YS+ G
Sbjct: 358 RSDESVRFLRTLVDSAETSQQKMVAYHRLGCVKFLREELDEAEQLFEAAFNLGHTYSVIG 417
Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
LARLG I+GHK WAYEKL SVISS PLGWMYQE SLYCEG+KRW+DL+KAT LDPTL+Y
Sbjct: 418 LARLGQIRGHKRWAYEKLGSVISSSIPLGWMYQESSLYCEGEKRWDDLEKATELDPTLTY 477
Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
PYMYRA+SLM KQN +AAL+EINRILGFKLALECLELRFCF+LALEDYQ A+CD+QAILT
Sbjct: 478 PYMYRAASLMRKQNAQAALSEINRILGFKLALECLELRFCFYLALEDYQLAICDIQAILT 537
Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
L PDYR+FEGRVAASQL L+REH++NWT ADCWLQLYDRWSSVDDIGSLSVIYQMLESD
Sbjct: 538 LCPDYRVFEGRVAASQLRTLLREHVENWTEADCWLQLYDRWSSVDDIGSLSVIYQMLESD 597
Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
A KGVLYFRQSLLLLRLNCP+AAMRSLQLARQH++S+HERLVYEGWILYDT HCEEGL+K
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPDAAMRSLQLARQHSSSEHERLVYEGWILYDTGHCEEGLQK 657
Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQV 714
AEESI +KRSFEAFFLKAYALADSS D+SCSSTV+SLLEDAL+CPSDRLRKGQ
Sbjct: 658 AEESISIKRSFEAFFLKAYALADSSLDASCSSTVISLLEDALRCPSDRLRKGQA 711
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350539533|ref|NP_001234175.1| ethylene-overproducer1-like protein [Solanum lycopersicum] gi|78707376|gb|ABB46489.1| ethylene-overproducer1-like protein [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/714 (75%), Positives = 620/714 (86%), Gaps = 3/714 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MRTFFPS+SCKE+ L NPQSWLQVERGKL+K+SS S+SSI+S IKVPEP ILP +K
Sbjct: 1 MRTFFPSESCKETHLKSINPQSWLQVERGKLAKISS--ESASSIDSLIKVPEPPILPFFK 58
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYV+VLA+IHEELE C QERS+LYLLQFQVFKGLGE KLMRRSLR AW KASTV+EK
Sbjct: 59 PVDYVQVLAKIHEELESCSPQERSNLYLLQFQVFKGLGEVKLMRRSLRAAWSKASTVYEK 118
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
LVFGAWLKYEKQ EELI+DLL +C KC +EFG IDIAS + ++ SH ++ + D
Sbjct: 119 LVFGAWLKYEKQDEELISDLLSSCGKCAKEFGAIDIASEMPAYKKLS-SHGVITTNEDSC 177
Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
R V FRI +EKI CDRQK A+LSAPF MLNG F ES CE+IDLSENNISP +R+I++
Sbjct: 178 PRTVSFRIADEKIACDRQKIASLSAPFHTMLNGCFTESFCEEIDLSENNISPLAMRLINE 237
Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
FS TG LN V+P+LLLEIL+FANKFCCE LKDACDRKLASL++ R+DA+EL+ A+EENS
Sbjct: 238 FSSTGLLNEVSPDLLLEILVFANKFCCESLKDACDRKLASLISCRQDALELLECALEENS 297
Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
PVLA SCLQVFLRELPD L D +VVE+ S+ RQ RSIM+G ASFSLYCLLSEV+MNLDP
Sbjct: 298 PVLAASCLQVFLRELPDSLKDSQVVELLSNTTRQQRSIMIGPASFSLYCLLSEVSMNLDP 357
Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
RSD++V FL L++SAET +Q+++A+H+LGCV+ LR+E DEAE LFEAA N GH YS+ G
Sbjct: 358 RSDESVRFLRTLVDSAETSQQKMVAYHRLGCVKFLREELDEAEQLFEAAFNLGHTYSVIG 417
Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
LARLG I+GHK WAYEKL SVISS PLGWMYQE SLYCEG+KRW+DL+KAT LDPTL+Y
Sbjct: 418 LARLGQIRGHKRWAYEKLGSVISSSIPLGWMYQESSLYCEGEKRWDDLEKATELDPTLTY 477
Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
PYMYRA+SLM KQN +AAL+EINRILGFKLALECLELRFCF+LALEDYQ A+CD+QAILT
Sbjct: 478 PYMYRAASLMRKQNAQAALSEINRILGFKLALECLELRFCFYLALEDYQLAICDIQAILT 537
Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
L P+YR+FEGRVAASQL L+REH++NWT AD WLQLYDRWSSVDDIGSLSVIYQMLESD
Sbjct: 538 LCPEYRVFEGRVAASQLRTLLREHVENWTEADWWLQLYDRWSSVDDIGSLSVIYQMLESD 597
Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
A KGVLYFRQSLLLLRLNCP+AAMRSLQLARQH++S+HERLVYEGWILYDT HCEEGL+K
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPDAAMRSLQLARQHSSSEHERLVYEGWILYDTGHCEEGLQK 657
Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQV 714
AEESI +KRSFEAFFLKAYALADSS D+SCSSTV+SLLEDAL+CPSDRLRKGQ
Sbjct: 658 AEESISIKRSFEAFFLKAYALADSSLDASCSSTVISLLEDALRCPSDRLRKGQA 711
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572224|ref|XP_003554270.1| PREDICTED: ETO1-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1087 bits (2812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/714 (74%), Positives = 604/714 (84%), Gaps = 3/714 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MR+FFP++SCKE+ N NPQSWL +ERGKL KLSSH SS+SIES IKVP+P ILP +K
Sbjct: 1 MRSFFPAESCKEAHPNALNPQSWLHIERGKLPKLSSH-PSSASIESLIKVPQPAILPFFK 59
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYVEVLA+IHEELE CP QERS+L+LLQ+QVF+GLGE KLMRRSL+ AWQ+A TVHEK
Sbjct: 60 PVDYVEVLARIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQRAHTVHEK 119
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
++FGAWLKYEKQ EEL+ADLL C KC +EF P+DIA HL D+N S E + + +++
Sbjct: 120 IIFGAWLKYEKQEEELMADLLAACGKCAKEFAPVDIAFHLPFDVN--ASSEGRTTNENRI 177
Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
+NV F I EKI CDRQK + LSAPF AML G F ESL E IDLSENNISPSG++ ISD
Sbjct: 178 SQNVTFTIGSEKIVCDRQKISELSAPFHAMLKGHFSESLSETIDLSENNISPSGMKAISD 237
Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
FS+ GSL V PNLLLEIL+FANK+CCERLKDACDR+LASLV+S+EDAVELM YA++E+S
Sbjct: 238 FSLNGSLIEVPPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDEHS 297
Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
VLA SCLQV LR+LP+C+ND RVVEIF HAN+Q +MVG F+L+C LSEV+MNL+
Sbjct: 298 SVLAASCLQVLLRDLPNCMNDNRVVEIFVHANKQQLEVMVGPGIFALFCFLSEVSMNLNS 357
Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
SD T FLERL+E AE +QRLLA HQLGCVRLLRKEYDEA LFE AVNAGH+YS+AG
Sbjct: 358 SSDTTAHFLERLVEFAENGKQRLLALHQLGCVRLLRKEYDEARCLFEGAVNAGHMYSVAG 417
Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
LARL YIKG KL +Y +L+SVISSVT LGWMYQERSLYC+GDKRWEDL+KA+ LDPTL Y
Sbjct: 418 LARLDYIKGDKLLSYGQLSSVISSVTSLGWMYQERSLYCDGDKRWEDLEKASNLDPTLIY 477
Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
PYMYRA++LM QN AALAEINRILGFKL+LECLE+RF L+LEDY+AALCDVQ ILT
Sbjct: 478 PYMYRAATLMRTQNAHAALAEINRILGFKLSLECLEIRFFIHLSLEDYKAALCDVQTILT 537
Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
L DYRMFEGRVAASQL LVREH++ WT ADCW +LYD WS+VDDIGSLSVIYQMLESD
Sbjct: 538 LRSDYRMFEGRVAASQLCTLVREHVERWTTADCWARLYDCWSAVDDIGSLSVIYQMLESD 597
Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
A KG+LYFRQSLLLLRLNCPEAAMRSL LARQHA+S+HERLVYEGWILYDT H EEGL+K
Sbjct: 598 AAKGILYFRQSLLLLRLNCPEAAMRSLLLARQHASSEHERLVYEGWILYDTGHYEEGLQK 657
Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQV 714
AEESI +KRSFEAFFLKAYALADSS D SCS TV+SLLEDALKCPSD LRKGQ
Sbjct: 658 AEESIDIKRSFEAFFLKAYALADSSIDPSCSPTVISLLEDALKCPSDNLRKGQA 711
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504961|ref|XP_003521261.1| PREDICTED: ETO1-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1076 bits (2783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/714 (74%), Positives = 605/714 (84%), Gaps = 3/714 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSS-IESFIKVPEPRILPNY 59
MR+FFP++SCKE+ N NPQSWLQ+ERGKL KLSS + SS+ IES IKVP+P ILP +
Sbjct: 1 MRSFFPAESCKEAHPNALNPQSWLQIERGKLPKLSSSSHPSSASIESLIKVPQPAILPFF 60
Query: 60 KPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHE 119
KPVDYVEVLAQIHEELE CP QERS+L+LLQ+QVF+GLGE KLMRRSL+ AWQ+A TVHE
Sbjct: 61 KPVDYVEVLAQIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQRAHTVHE 120
Query: 120 KLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ 179
K++FGAWLKYEKQ EELIADLL C KC +EF P+DIAS L D+N AGS E + + +
Sbjct: 121 KIIFGAWLKYEKQEEELIADLLAACGKCAKEFAPVDIASLLPFDVN-AGS-EGRTTNENC 178
Query: 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
+ +NV F I EKI C+RQK + LSAPF AML G F ESL E IDLSENNISPSG++ IS
Sbjct: 179 ISQNVTFTIGSEKIICERQKISELSAPFRAMLKGHFSESLSETIDLSENNISPSGMKAIS 238
Query: 240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
DFS+ GSL V PNLLLEIL+FANK+CCERLKDACDR+LASLV+S+EDAVELM YA++E+
Sbjct: 239 DFSLNGSLIEVLPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDEH 298
Query: 300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
S VLA SCLQV LR+LP+CLND RVVEIF HAN+Q ++MVG F+L+C L EV+MNL+
Sbjct: 299 STVLAASCLQVLLRDLPNCLNDNRVVEIFVHANKQQLAVMVGPGIFTLFCFLGEVSMNLN 358
Query: 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
SD T LERL+E AE D+QRLLA HQLGCVRLLRKEYDEA LFE AVNAGHIYS+A
Sbjct: 359 SSSDTTAHILERLVEFAENDQQRLLALHQLGCVRLLRKEYDEARCLFEGAVNAGHIYSVA 418
Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLS 479
GLARL YIKG KL +Y +LNSVISSVTPLGWMYQERSLYC+GDKRWEDL+KA+ LDPTL
Sbjct: 419 GLARLDYIKGDKLLSYGQLNSVISSVTPLGWMYQERSLYCDGDKRWEDLEKASNLDPTLI 478
Query: 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539
YPY YRA+SLM QN +AALAEINRILGFKL+ ECLE+RF L+LEDY+AALCDVQ IL
Sbjct: 479 YPYTYRAASLMRTQNAQAALAEINRILGFKLSPECLEVRFFIHLSLEDYKAALCDVQTIL 538
Query: 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599
TL DYRMFEGRVAASQL LVREH++ WT ADCW +LYD WS+VDDIGSLSVIYQMLES
Sbjct: 539 TLRSDYRMFEGRVAASQLCTLVREHVERWTTADCWARLYDCWSAVDDIGSLSVIYQMLES 598
Query: 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659
DA KG+LYFRQSLLLLRLNCPEAAMRSLQLARQHA+S+HERLVYEGWILYDT H EEGL
Sbjct: 599 DAAKGILYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHYEEGLW 658
Query: 660 KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 713
KAEESI +KRSFEAFFLKAYALADSS D SCS TV+SLLEDALKCPSD LRKGQ
Sbjct: 659 KAEESINIKRSFEAFFLKAYALADSSIDPSCSPTVISLLEDALKCPSDNLRKGQ 712
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082686|ref|XP_002306795.1| predicted protein [Populus trichocarpa] gi|222856244|gb|EEE93791.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/613 (81%), Positives = 557/613 (90%), Gaps = 2/613 (0%)
Query: 103 MRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQT 162
MRRSLR AW K STVHEKLVFGAWLK+E+QGEELI+DLL C KC QE G ID++S L
Sbjct: 1 MRRSLRSAWLKGSTVHEKLVFGAWLKFERQGEELISDLLATCGKCAQESGQIDVSSDLDI 60
Query: 163 DINVAGSHETVSM-SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCE 221
DI+ + S ETVSM +G +LR+V F+I +EKI CDRQK A+LSAPF AMLNG F ESLCE
Sbjct: 61 DIS-SSSRETVSMMNGSHILRSVSFKIGDEKIVCDRQKIASLSAPFHAMLNGCFSESLCE 119
Query: 222 DIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281
IDLSENNISP G R IS+FS+TGSLN +PN+LLE+LIFANKFCCERLKDACDRKLASL
Sbjct: 120 HIDLSENNISPLGFRAISEFSITGSLNEESPNVLLEMLIFANKFCCERLKDACDRKLASL 179
Query: 282 VASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVG 341
V+SR+DAVELM A+EENSPVLA SCLQVFL++LPDCLND+RVVEIFSHAN+Q + IMVG
Sbjct: 180 VSSRDDAVELMECALEENSPVLAASCLQVFLQDLPDCLNDDRVVEIFSHANKQEKMIMVG 239
Query: 342 LASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDE 401
ASFSLYCLLSEVAMNLDP+SDKT CFL++L+ESA+T+RQ+LLAFHQLGCVRLLRKEYDE
Sbjct: 240 PASFSLYCLLSEVAMNLDPQSDKTACFLDQLVESAQTNRQKLLAFHQLGCVRLLRKEYDE 299
Query: 402 AEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461
AE LFEAA+NAGHIYS++GLARLG I+GH+LWA++KL+SVISS TPLGWMY ERSL CEG
Sbjct: 300 AERLFEAALNAGHIYSVSGLARLGRIRGHRLWAFDKLSSVISSGTPLGWMYLERSLCCEG 359
Query: 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCF 521
DKRWEDL+KAT LDPTL+YPYMYRA++LM +QNV+AALAEINRILGFKLALECLELRFCF
Sbjct: 360 DKRWEDLEKATELDPTLTYPYMYRAAALMRRQNVQAALAEINRILGFKLALECLELRFCF 419
Query: 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581
+LALE+YQAA+CDVQAILTLSPDYRMFEGRVAASQL LVREH++NWT ADCWLQLYDRW
Sbjct: 420 YLALENYQAAICDVQAILTLSPDYRMFEGRVAASQLRTLVREHVENWTTADCWLQLYDRW 479
Query: 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641
SSVDD GSLSVIYQMLESDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+++HERL
Sbjct: 480 SSVDDTGSLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASTEHERL 539
Query: 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDA 701
VYEGWILYDT HC EGL+KAEESI +K+SFEAFFLKAYALADSS D SCSSTV+SLLE+A
Sbjct: 540 VYEGWILYDTGHCNEGLQKAEESINIKKSFEAFFLKAYALADSSLDPSCSSTVISLLEEA 599
Query: 702 LKCPSDRLRKGQV 714
LKCPSDRLRKGQ
Sbjct: 600 LKCPSDRLRKGQA 612
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500164|ref|XP_003518903.1| PREDICTED: ETO1-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/713 (73%), Positives = 603/713 (84%), Gaps = 3/713 (0%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
MRTFF ++SCKE+Q N NPQSWLQVERGKL KLSS SSS+SIES IKVP+ ILP +K
Sbjct: 1 MRTFFTAESCKETQPNALNPQSWLQVERGKLPKLSS-QSSSASIESLIKVPQSPILPFFK 59
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
PVDYVEVLAQIHEELE CP QE+S+L+LLQ+QVFKGLG+ KLMRRSLR AWQ+A+TVHEK
Sbjct: 60 PVDYVEVLAQIHEELESCPPQEKSNLFLLQYQVFKGLGDVKLMRRSLRSAWQRANTVHEK 119
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
++FGAWLKYEKQ EEL+A LL C KC +EFGPID+ S + D NV S + SM+G+
Sbjct: 120 IIFGAWLKYEKQ-EELVAQLLTACGKCEKEFGPIDVESQIPFDENVR-SQDRASMNGNNA 177
Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
V+F+I +EKI CDRQK + LSAPF AML G F ESL E IDLSENN+SPSG+R IS
Sbjct: 178 SEYVIFKIGDEKIVCDRQKISELSAPFHAMLKGCFRESLSETIDLSENNLSPSGMRAISY 237
Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
FS TGSL V PNLL+EIL FANK+CCERLK ACDR+LASLV+SREDA+ELM YA+++NS
Sbjct: 238 FSSTGSLLDVPPNLLVEILAFANKYCCERLKQACDRRLASLVSSREDALELMEYAVDQNS 297
Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
LA SCLQV LR++P+CL+D +VVE+F HAN+Q ++MVG F+L+C LSEV+MNL+
Sbjct: 298 AGLAASCLQVLLRDIPNCLSDNQVVELFIHANKQQLAVMVGPGIFALFCFLSEVSMNLNS 357
Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
SD T FLERL++ AE D+QRLLAFHQLGCVRL RKEYDEA LFE A+N GH+YS+AG
Sbjct: 358 SSDTTAHFLERLVDFAENDKQRLLAFHQLGCVRLSRKEYDEAYCLFERALNVGHVYSVAG 417
Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
LARL IKG KL +YEK++SVISS TPLGWMYQERSLYC+GD R +DL+KAT LDPTL Y
Sbjct: 418 LARLDSIKGEKLLSYEKISSVISSDTPLGWMYQERSLYCDGDLRQKDLEKATELDPTLIY 477
Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
PYMYR +SLM NV+ ALAEINRILGFKL+LECLELRF +LALEDY+AA+ DVQAILT
Sbjct: 478 PYMYRTASLMKTGNVQGALAEINRILGFKLSLECLELRFFIYLALEDYKAAVRDVQAILT 537
Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
L P Y+MFEGRVAASQL LVREH+++WT ADCW +LYD WS+VDDI SLSVIYQMLESD
Sbjct: 538 LCPSYKMFEGRVAASQLCTLVREHVEHWTTADCWARLYDCWSAVDDIESLSVIYQMLESD 597
Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
A KGVLYFRQSLLLLRLNCPEAAMRSLQLA QHA+S+HERLVYEGWILYDT HCEEGL+K
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPEAAMRSLQLAWQHASSEHERLVYEGWILYDTGHCEEGLQK 657
Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 713
AEESI +KRSFEA+FLKAYALADSS DSSCSSTV+SLLEDAL+CPSD LRKGQ
Sbjct: 658 AEESISIKRSFEAYFLKAYALADSSVDSSCSSTVISLLEDALRCPSDNLRKGQ 710
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 714 | ||||||
| TAIR|locus:2132402 | 888 | EOL1 "ETO1-like 1" [Arabidopsi | 0.994 | 0.799 | 0.674 | 5.4e-260 | |
| TAIR|locus:2074343 | 959 | ETO1 "ETHYLENE OVERPRODUCER 1" | 0.927 | 0.690 | 0.460 | 7.1e-154 |
| TAIR|locus:2132402 EOL1 "ETO1-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2502 (885.8 bits), Expect = 5.4e-260, P = 5.4e-260
Identities = 482/715 (67%), Positives = 569/715 (79%)
Query: 1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLXXXXXXXXXXXXXXXFIKVPEPRILPNYK 60
MRTF+PSDSCKESQL+ NPQSWLQVERGKL FIKVPEP+ILP+YK
Sbjct: 1 MRTFYPSDSCKESQLDSLNPQSWLQVERGKLSSSASSSAPLCRES-FIKVPEPQILPHYK 59
Query: 61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
P+DYVEVLAQIHEEL+ CPLQERS LYLLQ+QVF+GLGE KL RRSL+ AWQ+A+TVHEK
Sbjct: 60 PLDYVEVLAQIHEELDTCPLQERSILYLLQYQVFRGLGETKLRRRSLQSAWQEATTVHEK 119
Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ- 179
+VFG+WL+YEKQGEE+I DLL +C K +EF P+DIAS+ A S E S+ ++
Sbjct: 120 VVFGSWLRYEKQGEEVITDLLSSCGKYSEEFVPLDIASYFPA--TTASSPEAASVKTNRS 177
Query: 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
V +NVVF+I EEKI C R+K A+LSAPF AML G+F ESL ++ID+SEN++S S +R++
Sbjct: 178 VSKNVVFKIGEEKIACQRRKIASLSAPFHAMLYGNFTESLLDEIDMSENHVSSSAMRVVR 237
Query: 240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
DFSV G L GV+ NLLLE+L+FANKFCCERLKDACDR+LASL++S E A+ELM +A+EEN
Sbjct: 238 DFSVVGVLIGVSKNLLLEVLVFANKFCCERLKDACDRELASLISSMECAIELMDFALEEN 297
Query: 300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
SP+LA SCLQVFL E+PD LNDERVVE+ + NR S M G A FSLY LSEV+M +D
Sbjct: 298 SPILASSCLQVFLYEMPDSLNDERVVEVLTRVNRSQVSTMAGKAPFSLYSCLSEVSMCID 357
Query: 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
PRSD+T+ FLE+L++ AE DRQ++L FH+LGC+RLLRKEY EAE FE A N GH+YS
Sbjct: 358 PRSDRTLGFLEKLVDFAENDRQQVLGFHRLGCMRLLRKEYREAEEAFETAFNLGHVYSAT 417
Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTP-LGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
GLARLGYI+GH+LWAYEKL+SVISSV+P LGWMYQERS YCEGDK+ EDL+KAT LDPTL
Sbjct: 418 GLARLGYIQGHRLWAYEKLSSVISSVSPPLGWMYQERSFYCEGDKKLEDLEKATELDPTL 477
Query: 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKXXXXXXXXXXXXXXXXXDYQAALCDVQAI 538
+YPYMYRA + M+KQN +AAL EINRILGFK DY+AAL D+QA
Sbjct: 478 TYPYMYRAVTRMSKQNAKAALEEINRILGFKLALECLEIRFCLYLGMDDYEAALRDIQAA 537
Query: 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
LTL PDYRMF+G+VA QL LV EH++NWT ADCW+QLY++WS+VDDIGSLSVIYQMLE
Sbjct: 538 LTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWMQLYEKWSNVDDIGSLSVIYQMLE 597
Query: 599 SDAPKGVLYFRQSXXXXXXNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
SDA KGVLYFRQS NCPEAAMRSLQLAR+HA+SDHERLVYEGWILYDT HCEEGL
Sbjct: 598 SDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHASSDHERLVYEGWILYDTGHCEEGL 657
Query: 659 RKAEESIQMKRSFEAFFLKAYALAXXXXXXXXXXXXXXLLEDALKCPSDRLRKGQ 713
+KA+ESI +KRSFEA+FL+AYALA LLEDALKCPSDRLRKGQ
Sbjct: 658 QKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVVSLLEDALKCPSDRLRKGQ 712
|
|
| TAIR|locus:2074343 ETO1 "ETHYLENE OVERPRODUCER 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1483 (527.1 bits), Expect = 7.1e-154, Sum P(2) = 7.1e-154
Identities = 310/673 (46%), Positives = 425/673 (63%)
Query: 52 EPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAW 111
EP+I P K VD VE +AQ++ +E C E+S YL Q +F+G+ + KL RRSLR +
Sbjct: 109 EPQIDPCLKFVDLVEKMAQVYRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSR 168
Query: 112 QKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTD-----INV 166
Q A VH K+V +WL++E++ +ELI ++C E + S +
Sbjct: 169 QHAVDVHAKVVLASWLRFERREDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCVC 228
Query: 167 AGSHETVSMSGDQ------VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC 220
+G+ + M+ D+ V ++ F I +E++ C R K A+LS PF AML G F E
Sbjct: 229 SGASRSEMMNEDECSTSQEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKR 288
Query: 221 EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
I+ ++N IS G+R FS T L+ PN++LE+L AN+FCC+ LK ACD LA
Sbjct: 289 ATINFTQNGISVEGMRAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAH 348
Query: 281 LVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMV 340
LV S ++A+ L+ Y +EE + +L +CLQVFLRELP +++ V++IF A + R +
Sbjct: 349 LVNSLDEAMLLIEYGLEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASL 408
Query: 341 GLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYD 400
G ASF+LY LS++AM D +S+ TV LERL+E A ++ LA+HQLG V L RKEY
Sbjct: 409 GHASFTLYFFLSQIAMEDDMKSNTTVMLLERLVECAVDSWEKQLAYHQLGVVMLERKEYK 468
Query: 401 EAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460
+A+ F AAV AGH+YS+ G+AR + + H+ AY+ +NS+IS GWM+QERSLYC
Sbjct: 469 DAQRWFNAAVEAGHLYSLVGVARTKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCS 528
Query: 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKXXXXXXXXXXX 520
G ++ DLD AT DPTL++PY +RA +L+ + AA+AE+N+ILGFK
Sbjct: 529 GKEKLLDLDTATEFDPTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCLEMRAW 588
Query: 521 XXXXXXDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580
DY+ AL D++A+LTL P++ MF ++ + L+R W+ ADCW+QLYDR
Sbjct: 589 ISIGMEDYEGALKDIRALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDR 648
Query: 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSXXXXXXNCPEAAMRSLQLARQHAASDHER 640
WSSVDDIGSL+V++ ML +D K +L FRQS NC +AAMRSL+LAR H+ S+HER
Sbjct: 649 WSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHER 708
Query: 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAXXXXXXXXXXXXXXLLED 700
LVYEGWILYDT H EE L KAEESI ++RSFEAFFLKAYALA LL++
Sbjct: 709 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQE 768
Query: 701 ALKCPSDRLRKGQ 713
ALKCPSD LRKGQ
Sbjct: 769 ALKCPSDGLRKGQ 781
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZQX6 | ETOL1_ARATH | No assigned EC number | 0.7174 | 0.9943 | 0.7995 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 714 | |||
| smart00225 | 97 | smart00225, BTB, Broad-Complex, Tramtrack and Bric | 1e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.001 |
| >gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFS 242
+V + +K + AA S F A+ + F ES +I L + +SP R + +F
Sbjct: 1 DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDD--VSPEDFRALLNFL 58
Query: 243 VTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281
TG L+ + + E+L A+ L + C+ L L
Sbjct: 59 YTGKLD-LPEENVEELLELADYLQIPGLVELCEEFLLKL 96
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 54/298 (18%), Positives = 102/298 (34%), Gaps = 42/298 (14%)
Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAA--VNAGHIYSI 418
+ DK + ++L + + + LG + L + + +A FE A + +
Sbjct: 446 QFDKALAAAKKLEKKQPDNA---SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502
Query: 419 AGLARLGYIKGHKLWA---YEKLNSVISSVTPLGWMYQERSLYC-----EGDKRWEDLDK 470
A LAR+ +G+ A +EK+ + L + LY E W L+K
Sbjct: 503 ANLARIDIQEGNPDDAIQRFEKV--LTIDPKNLRAILALAGLYLRTGNEEEAVAW--LEK 558
Query: 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLALECLELRFCFFLALEDYQ 529
A L+P P + A + K ++ ALA +N + E + LA D
Sbjct: 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618
Query: 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589
A+ + +L L PD + +A + + +
Sbjct: 619 KAVSSFKKLLALQPDSALALLLLADAY------------------------AVMKNYAKA 654
Query: 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647
++ + + LE + LLL E+A + + ++ EG +
Sbjct: 655 ITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDL 712
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 714 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.97 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.97 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.88 | |
| KOG4350 | 620 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.87 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.85 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.84 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.83 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.83 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.82 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.82 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.8 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.78 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| KOG2075 | 521 | consensus Topoisomerase TOP1-interacting protein B | 99.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.76 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.76 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.75 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.73 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.71 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.7 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.7 | |
| KOG4591 | 280 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| PF00651 | 111 | BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( | 99.7 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.67 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| smart00225 | 90 | BTB Broad-Complex, Tramtrack and Bric a brac. Doma | 99.62 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.61 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.61 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.57 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.56 | |
| KOG4682 | 488 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.54 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.51 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.51 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.5 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.49 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.48 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.45 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.44 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.44 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.43 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.41 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.38 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.36 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.35 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.34 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.34 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.33 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.32 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.32 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.31 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.29 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.27 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.27 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.27 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.26 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.25 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.19 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.18 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.18 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.16 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.16 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.12 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.1 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.09 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.07 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.07 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.07 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.05 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.03 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.03 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.03 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.03 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.02 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.02 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.02 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.98 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.98 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.98 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.98 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.96 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.95 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.95 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.93 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.9 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.89 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.88 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.88 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.88 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.86 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.83 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.83 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.82 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.81 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.8 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.77 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.76 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.76 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.73 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.73 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.72 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.7 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.67 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.65 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.65 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.64 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.64 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.61 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.57 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.54 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.52 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.52 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.5 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.49 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.47 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.47 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.47 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.43 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.42 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.42 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.4 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.35 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.31 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 98.3 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.28 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 98.26 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.26 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.25 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.24 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.23 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.18 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.17 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.16 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.15 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.15 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.14 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.12 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.09 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 98.09 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.09 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.06 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.06 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.06 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.05 | |
| PF07707 | 103 | BACK: BTB And C-terminal Kelch; InterPro: IPR01170 | 98.02 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.01 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.98 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.92 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.9 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.88 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.86 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.82 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.82 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.78 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.71 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.66 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.66 | |
| PF02214 | 94 | BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi | 97.66 | |
| KOG2716 | 230 | consensus Polymerase delta-interacting protein PDI | 97.63 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.6 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.6 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.57 | |
| KOG2838 | 401 | consensus Uncharacterized conserved protein, conta | 97.55 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.55 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.5 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| smart00875 | 101 | BACK BTB And C-terminal Kelch. The BACK domain is | 97.48 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.46 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.42 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.4 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.38 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.37 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.35 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.32 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.3 | |
| KOG3473 | 112 | consensus RNA polymerase II transcription elongati | 97.3 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.29 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.29 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.29 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.2 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.17 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.14 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.12 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.08 | |
| KOG1987 | 297 | consensus Speckle-type POZ protein SPOP and relate | 97.05 | |
| KOG2838 | 401 | consensus Uncharacterized conserved protein, conta | 97.0 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.97 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.93 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.92 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.88 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.88 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.88 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.8 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.78 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.75 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.74 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.61 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.59 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.53 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.46 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.42 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.39 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.33 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.31 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.28 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 96.22 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.13 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.08 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.02 | |
| PF11822 | 317 | DUF3342: Domain of unknown function (DUF3342); Int | 96.01 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.01 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.01 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.98 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.97 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.91 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.91 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.87 | |
| smart00512 | 104 | Skp1 Found in Skp1 protein family. Family of Skp1 | 95.86 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.8 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.79 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.65 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.64 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.49 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 95.43 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 95.32 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.3 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.27 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.17 | |
| KOG1665 | 302 | consensus AFH1-interacting protein FIP2, contains | 95.09 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.07 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.05 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 95.05 | |
| KOG2714 | 465 | consensus SETA binding protein SB1 and related pro | 95.04 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.03 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.92 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.9 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 94.87 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.82 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.81 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.77 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.75 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.53 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.51 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 94.46 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.4 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.35 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.31 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.3 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 94.2 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 94.12 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 94.06 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 93.69 | |
| KOG1724 | 162 | consensus SCF ubiquitin ligase, Skp1 component [Po | 93.66 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 93.29 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 93.25 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 93.21 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 92.63 | |
| PF03931 | 62 | Skp1_POZ: Skp1 family, tetramerisation domain; Int | 92.27 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 92.18 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 92.12 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 92.05 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 91.66 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.64 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 90.91 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.76 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 90.6 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.29 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 89.98 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 89.97 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 89.69 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.64 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 89.53 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 89.01 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 88.36 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 88.29 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 88.27 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.03 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 87.97 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 87.75 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.23 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 87.12 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 86.46 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 86.33 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 85.91 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 85.74 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 85.54 | |
| PF01466 | 78 | Skp1: Skp1 family, dimerisation domain; InterPro: | 85.53 | |
| COG5201 | 158 | SKP1 SCF ubiquitin ligase, SKP1 component [Posttra | 84.97 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 84.75 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 84.68 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.47 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.38 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 84.26 | |
| KOG3840 | 438 | consensus Uncharaterized conserved protein, contai | 84.04 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 84.03 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 84.0 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 83.54 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.09 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 82.59 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 82.54 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 82.11 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 81.95 | |
| COG3014 | 449 | Uncharacterized protein conserved in bacteria [Fun | 81.83 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 81.2 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 81.08 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 81.07 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.87 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 80.68 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 80.28 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 80.24 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=323.16 Aligned_cols=297 Identities=16% Similarity=0.081 Sum_probs=264.3
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc-
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY- 458 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~- 458 (714)
.++++-+||++...+|+..+||..|++|++++ ..+||+++|+||-..+.++.|+..|.+|+.+.|+.+.+|-|.+-.
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIY 296 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEE
Confidence 46889999999999999999999999999995 567899999999999999999999999999999877777665431
Q ss_pred ---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 459 ---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 459 ---~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
|..+-||..|++||+++|+++.||+|+|+++.+.|+..||...|++||.+.|+ +++.+|+|.+|.++|.+++|++.
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHH
Confidence 23399999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHH
Q 005106 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 614 (714)
Q Consensus 535 ~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L 614 (714)
|.++++..|... ++.+.++.+...+...++| +.+|..||.++|..++++.|+|+++
T Consensus 377 y~~al~v~p~~a------aa~nNLa~i~kqqgnl~~A------------------i~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 377 YLKALEVFPEFA------AAHNNLASIYKQQGNLDDA------------------IMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHhhChhhh------hhhhhHHHHHHhcccHHHH------------------HHHHHHHHhcCchHHHHHHhcchHH
Confidence 999999999994 4555566555666666666 8899999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc--CCC-CCc
Q 005106 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS--SQD-SSC 690 (714)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~--~~~-~~~ 690 (714)
..+|+..+|+.+|.+|+.++|..+|||.|+|.++-+.|+..+|++.|++|+.|+|+|. ||-|++-++-=- ..| ..-
T Consensus 433 ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999998876321 122 122
Q ss_pred hhhHHHHHHHhh
Q 005106 691 SSTVVSLLEDAL 702 (714)
Q Consensus 691 ~~~~~~~~~~~~ 702 (714)
-.++++..++-+
T Consensus 513 ~~kl~sivrdql 524 (966)
T KOG4626|consen 513 MKKLVSIVRDQL 524 (966)
T ss_pred HHHHHHHHHHHH
Confidence 345666666554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=321.11 Aligned_cols=334 Identities=15% Similarity=0.096 Sum_probs=271.2
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 005106 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSV 441 (714)
Q Consensus 364 ~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~a 441 (714)
....+.+.++++.+++ ..++.++|.++..+|+.++|..+|..||.++| ..+...+|.++-.+|+..+|.+.|.+|
T Consensus 134 ~al~~y~~aiel~p~f---ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 134 DALALYRAAIELKPKF---IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHHhcCchh---hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 4444555555555544 56777888888888888888888888888866 566777888888888888888888888
Q ss_pred HhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH
Q 005106 442 ISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE 516 (714)
Q Consensus 442 I~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~ 516 (714)
|+..|.++-+|.++|-. |....||..|++|+.|||++++||+|+|++|.+.+++++|+..|.||+.+.|+ ..++-
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~g 290 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHG 290 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhcc
Confidence 88888777777776532 33378888888888888888888888888888888888888888888888886 56666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh-HHHHHHHHHHHHhhhhhhH--------HHHHHhhhhcccccccc
Q 005106 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR-VAASQLHMLVREHIDNWTI--------ADCWLQLYDRWSSVDDI 587 (714)
Q Consensus 517 ~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~-~~a~~~~~~l~~~~~~~~~--------A~~~~~l~~~~~~~~d~ 587 (714)
|.|.+|.++|+.+-||..|+++|+++|++..++.+ +.|....|.+.+.++-+.+ ||++.+|+........+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 77888888888888888888888888888665543 3366666666666655444 56667777777777777
Q ss_pred c-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 588 G-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 588 ~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+ |...|..||+..|..+.+++|+|.++..+|..++|+.+|+.|++++|..++++.|+|..|-.+|+.++|++.|++||.
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 7 788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 667 MKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 667 i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
++|.|+ |+.|.|-+.-||+==| .-|+--++|||=
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~----~AI~sY~~aLkl 485 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIP----EAIQSYRTALKL 485 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcH----HHHHHHHHHHcc
Confidence 999999 9999999999987544 357777777774
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=300.60 Aligned_cols=219 Identities=19% Similarity=0.264 Sum_probs=196.1
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+.+.+.+|||++.+++++|+|||+||||+||||++||+++++|+.+.+|+|. +|++.+|..+++|+|||++. ++.+|
T Consensus 30 lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~-i~~~n 106 (571)
T KOG4441|consen 30 LREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLDYAYTGKLE-ISEDN 106 (571)
T ss_pred HHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHHHhhcceEE-echHh
Confidence 6689999999999999999999999999999999999999999999999999 49999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVE 326 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ 326 (714)
|++||.+|++||++.+++.|++||.++++ ++||+++..+|+.|++++|......++.+||.+ .|+.+++.+
T Consensus 107 Vq~ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 107 VQELLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIG 185 (571)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHh
Confidence 99999999999999999999999999995 899999999999999999999999888888765 788999999
Q ss_pred HhccccccchhhhccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHh---hhhHHHHHHHH-HHHHHHHHhccchHHH
Q 005106 327 IFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLES---AETDRQRLLAF-HQLGCVRLLRKEYDEA 402 (714)
Q Consensus 327 ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~---a~~~lq~~~A~-~~lG~~~~~~g~y~eA 402 (714)
++++++++ |..|+.++.++++||++|...|..++.++++. +++ ++.++.+.+.. ..+.....++.-..+|
T Consensus 186 ll~~d~l~-----v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~-vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea 259 (571)
T KOG4441|consen 186 LLSSDDLN-----VDSEEEVFEAAMRWVKHDFEEREEHLPALLEA-VRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEA 259 (571)
T ss_pred hccccCCC-----cCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHh-cCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 99999995 88999999999999999988889999999999 554 35555554433 2344445556667777
Q ss_pred H
Q 005106 403 E 403 (714)
Q Consensus 403 ~ 403 (714)
.
T Consensus 260 ~ 260 (571)
T KOG4441|consen 260 K 260 (571)
T ss_pred H
Confidence 6
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=295.77 Aligned_cols=190 Identities=14% Similarity=0.239 Sum_probs=170.7
Q ss_pred ccCCCCCccEEEEEc-CeEEEeehhhhhcCCHHHHHhhcCCCCcCC-cceEEeCCCCCCHHHHHHHHHhhccCCCCCCCH
Q 005106 175 MSGDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGSFMESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~-~~~f~aHr~VLAa~S~yF~amF~~~~~Es~-~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~ 252 (714)
+..++.+|||+|+|+ |++|+|||.||||+|+||++||+++|+|+. +.+|+|. ++++++|+.||+|+|||+ ++.
T Consensus 19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~---i~~ 93 (557)
T PHA02713 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH---ISS 93 (557)
T ss_pred HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC---CCH
Confidence 567889999999997 899999999999999999999999999875 7899998 599999999999999996 568
Q ss_pred HHHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHH
Q 005106 253 NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERV 324 (714)
Q Consensus 253 ~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v 324 (714)
+||++||.+|++||++.|++.|++||.+.++ ++||+.++.++..+.+..|.+.|.+++.+||.. .|+.+++
T Consensus 94 ~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l 172 (557)
T PHA02713 94 MNVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEIL 172 (557)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHH
Confidence 9999999999999999999999999999995 899999999999999999999999999998865 6888999
Q ss_pred HHHhccccccchhhhccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh
Q 005106 325 VEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA 376 (714)
Q Consensus 325 ~~ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a 376 (714)
.++|++++.. .|..|+.+++++++||++|...|. +..+||++ +|++
T Consensus 173 ~~lL~~d~~l----~v~~Ee~v~eav~~W~~~d~~~r~-~~~~ll~~-VR~~ 218 (557)
T PHA02713 173 FDIISTNDNV----YLYREGYKVTILLKWLEYNYITEE-QLLCILSC-IDIQ 218 (557)
T ss_pred HHHhcccccc----CCCcHHHHHHHHHHHHhcCHHHHH-HHhhhHhh-hhHh
Confidence 9999998731 388899999999999999976554 45688887 6654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=276.88 Aligned_cols=283 Identities=13% Similarity=0.059 Sum_probs=236.8
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+.....+++++++.++ ...+.++|.++...|++++|+..|++||+++|. .++..+|.++..+|++++|+.++
T Consensus 142 ~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 142 DFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred CHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666777777766553 356788999999999999999999999998654 47888999999999999998877
Q ss_pred HHHHhcCC------------------------------C---------------------------------cHHHHHHH
Q 005106 439 NSVISSVT------------------------------P---------------------------------LGWMYQER 455 (714)
Q Consensus 439 ~~aI~~~p------------------------------~---------------------------------~~~ay~~r 455 (714)
..+....+ . .+.++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (615)
T TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL 297 (615)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence 65543221 1 11111222
Q ss_pred Hh-------cCChhHHHHHHHHHHhc---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 005106 456 SL-------YCEGDKRWEDLDKATAL---DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524 (714)
Q Consensus 456 g~-------~~~~~eAl~d~~kAi~L---dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~ 524 (714)
|. .+.+++|+..|++|+++ +|+.+.+|.++|.++..+|++++|+..|+++|+++|+ +..+..+|.++..
T Consensus 298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 11 12458899999999986 5889999999999999999999999999999999997 7888899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 005106 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~ 604 (714)
+|++++|+.+|+++++++|++.. +...++.+....+++++| +.+|+++++++|.+.
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A------------------~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPD------IYYHRAQLHFIKGEFAQA------------------GKDYQKSIDLDPDFI 433 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcCccCH
Confidence 99999999999999999999843 444555555556666666 889999999999999
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
.+++++|.++.++|++++|+..++++++..|+++++++++|.++..+|++++|+..|++|+.++|..
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999874
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-30 Score=290.84 Aligned_cols=174 Identities=14% Similarity=0.123 Sum_probs=155.8
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||++++|+ +|+|||+||||+||||++||+++|+|+.+ +|++...++++++|+.||+|+|||++. ++.+|
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~n 92 (480)
T PHA02790 16 LSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHN 92 (480)
T ss_pred HHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-Eeccc
Confidence 4567889999998765 79999999999999999999999999965 566531159999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCCh--HH-----HHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND--ER-----VVEI 327 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~--~~-----v~~l 327 (714)
|+++|.+|++||++.+++.|++||.+.++ ++||++++.+|..|+++.|.+.+.+++.+||.+.... ++ +.++
T Consensus 93 V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~l 171 (480)
T PHA02790 93 VVNLLRASILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLI 171 (480)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHh
Confidence 99999999999999999999999999995 8999999999999999999999999999998875432 22 4678
Q ss_pred hccccccchhhhccchhhhHHHHHHHhhhc
Q 005106 328 FSHANRQHRSIMVGLASFSLYCLLSEVAMN 357 (714)
Q Consensus 328 l~~~~~~~r~~~v~~~~~~~~~~l~~V~~d 357 (714)
|++|+++ |..|+.+++++++||+++
T Consensus 172 Lssd~L~-----v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 172 LESDELN-----VPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred cccccCC-----CccHHHHHHHHHHHHHhh
Confidence 8899884 889999999999999985
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=268.91 Aligned_cols=297 Identities=14% Similarity=0.084 Sum_probs=209.9
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh------------------------
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY------------------------ 416 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~------------------------ 416 (714)
+.+..+..++.++...++. ..+++.+|.++...|+|++|+.+|.+++.+++..
T Consensus 175 ~~~~Ai~~~~~al~l~p~~---~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l 251 (615)
T TIGR00990 175 DWEKVVEDTTAALELDPDY---SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEIL 251 (615)
T ss_pred CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666656554433 5688999999999999999999887665432100
Q ss_pred --------hHhhHHHH--------------------------H----------HHhCCHHHHHHHHHHHHhc---CCCcH
Q 005106 417 --------SIAGLARL--------------------------G----------YIKGHKLWAYEKLNSVISS---VTPLG 449 (714)
Q Consensus 417 --------a~~~lg~~--------------------------~----------~~~G~~~~A~~~~~~aI~~---~p~~~ 449 (714)
++..+|.. + ...+++++|++.|++++.. .|+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a 331 (615)
T TIGR00990 252 ETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA 331 (615)
T ss_pred hcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH
Confidence 00011110 0 1135788999999999986 47788
Q ss_pred HHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 005106 450 WMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524 (714)
Q Consensus 450 ~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~ 524 (714)
.+|..+|.+ ++.++|+.+|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ++.++.+|.++..
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888888753 66799999999999999999999999999999999999999999999999996 8889999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 005106 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~ 604 (714)
+|++++|+.+|+++++++|++... ...++.+....+++++| +..+++++..+|.++
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~------~~~la~~~~~~g~~~eA------------------~~~~~~al~~~P~~~ 467 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFS------HIQLGVTQYKEGSIASS------------------MATFRRCKKNFPEAP 467 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHH------HHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCh
Confidence 999999999999999999998542 22333333333333333 556666666666666
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH------HHHHHHHHh-cCCHHHHHHHHHHHHhcCCCHH-HHHH
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL------VYEGWILYD-TSHCEEGLRKAEESIQMKRSFE-AFFL 676 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~------~~~G~~ly~-~G~~eeAl~~ye~Ai~i~~~~~-a~~~ 676 (714)
.+++++|.++..+|++++|+..|++|++++|++...+ ++.+.+++. .|++++|+..+++|+.++|++. ++..
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 6666666666666666666666666666666543322 223333433 4666666666666666666665 5555
Q ss_pred HHHHhhcc
Q 005106 677 KAYALADS 684 (714)
Q Consensus 677 ~~~~~~~~ 684 (714)
.|.++...
T Consensus 548 la~~~~~~ 555 (615)
T TIGR00990 548 MAQLLLQQ 555 (615)
T ss_pred HHHHHHHc
Confidence 55555443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=280.52 Aligned_cols=186 Identities=15% Similarity=0.221 Sum_probs=173.1
Q ss_pred CCCCCccEEEEE--cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 177 GDQVLRNVVFRI--HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 177 ~~~~~~DV~l~v--~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
.++.+|||+|+| +|++|+|||.|||++|+||++||+++|+ +.+|+|+ + ++++|+.+|+|+|||++. ++.++
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~-i~~~~ 77 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKIN-ITSNN 77 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceE-EcHHH
Confidence 478899999998 9999999999999999999999999997 5789998 5 999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVE 326 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ 326 (714)
+++||.+|++|+++.|++.|++||.+.++ .+||+.++.+|..+++..|.+.|.+++..||.. .|+.+.+.+
T Consensus 78 ~~~ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ 156 (534)
T PHA03098 78 VKDILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIK 156 (534)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHH
Confidence 99999999999999999999999999995 899999999999999999999999999988753 678899999
Q ss_pred HhccccccchhhhccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh
Q 005106 327 IFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA 376 (714)
Q Consensus 327 ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a 376 (714)
+|+++++. +..|+.++.++++|+.++...|..++.+||++ +|++
T Consensus 157 ll~~~~L~-----v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~-vR~~ 200 (534)
T PHA03098 157 ILSDDKLN-----VSSEDVVLEIIIKWLTSKKNNKYKDICLILKV-LRIT 200 (534)
T ss_pred HhcCCCcC-----cCCHHHHHHHHHHHHhcChhhhHhHHHHHHhh-cccc
Confidence 99999984 88999999999999999988888888999988 6644
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=252.61 Aligned_cols=314 Identities=11% Similarity=-0.032 Sum_probs=258.7
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHH
Q 005106 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNS 440 (714)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~ 440 (714)
.....+++..+.-.+ ....+++++|.+....|++++|+..|+++++.+| ..++..+|.++...|++++|+..+++
T Consensus 59 ~~A~~l~~~~l~~~p---~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~ 135 (656)
T PRK15174 59 DVGLTLLSDRVLTAK---NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ 135 (656)
T ss_pred chhHHHhHHHHHhCC---CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555443333 2367889999999999999999999999999854 56788899999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-HHH
Q 005106 441 VISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A-LEC 514 (714)
Q Consensus 441 aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~-~~~ 514 (714)
+++++|++..++..++.. ++.++|+..|.+++.++|+++.++.+.+ .+...|++++|+..++++++.+| . ...
T Consensus 136 Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~ 214 (656)
T PRK15174 136 AWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES 214 (656)
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH
Confidence 999999999998888653 6669999999999999999999998765 48899999999999999999876 3 333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 005106 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~ 594 (714)
+...+.++...|++++|+..|+++++++|++.. +...++.+....+++++|. ..|+..++
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~------~~~~Lg~~l~~~G~~~eA~--------------~~A~~~~~ 274 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAA------LRRSLGLAYYQSGRSREAK--------------LQAAEHWR 274 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCchhhH--------------HHHHHHHH
Confidence 344677889999999999999999999999843 3333444444444444321 02488999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-H
Q 005106 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-A 673 (714)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a 673 (714)
++++++|+++.++.++|.++.++|++++|+..+++|++++|++++++.++|.++..+|++++|++.|+++++.+|+.. +
T Consensus 275 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 275 HALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred HHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
+...|.++.... --..-+..++.|++.
T Consensus 355 ~~~~a~al~~~G----~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAG----KTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHHh
Confidence 555688886543 344556667777765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-22 Score=241.83 Aligned_cols=334 Identities=16% Similarity=0.119 Sum_probs=257.0
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+....+++++.+..+.. ...+..++..+...|++++|+..++++++.. +..++..+|.++...|++++|+..|
T Consensus 548 ~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQE---IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred CHHHHHHHHHHHHHhCccc---hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555665544433322 3455678888888899999999998888763 4556778888999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH
Q 005106 439 NSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE 513 (714)
Q Consensus 439 ~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~ 513 (714)
+++++.+|+.+.++...+. .++.++|+..|+++++.+|++..++..++.++...|++++|+..++++.+..|+ +.
T Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 704 (899)
T TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChH
Confidence 9999888888777777654 356688999999999999999999999999999999999999999988888885 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH--------HHHHHhhhhcccccc
Q 005106 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI--------ADCWLQLYDRWSSVD 585 (714)
Q Consensus 514 ~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~--------A~~~~~l~~~~~~~~ 585 (714)
.+..+|.++...|++++|+..|+++++.+|+.....+.+.+....+......+.+++ ...+..+.......+
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 777788888999999999999999999988874433333222222222222222211 223334444444445
Q ss_pred ccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 586 DIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (714)
Q Consensus 586 d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~A 664 (714)
+.. |+..|+++++.+|.++.++++.|.++..+|+ .+|+..+++++++.|+++..+.++|++++.+|++++|+..|+++
T Consensus 785 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555 7889999999999999999999999999999 77999999999999999999999999999999999999999999
Q ss_pred HhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 005106 665 IQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 665 i~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (714)
++++|+.. ++++.|.++...+- -...+++++++|
T Consensus 864 ~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~ 898 (899)
T TIGR02917 864 VNIAPEAAAIRYHLALALLATGR----KAEARKELDKLL 898 (899)
T ss_pred HhhCCCChHHHHHHHHHHHHcCC----HHHHHHHHHHHh
Confidence 99999766 89888888887643 445566666655
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-24 Score=249.12 Aligned_cols=284 Identities=14% Similarity=-0.000 Sum_probs=247.8
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+.....+++++...|+. ..++..+|.++...|++++|+..|++|++++| ..++..+|.++...|++++|+..+
T Consensus 91 ~~~~A~~~l~~~l~~~P~~---~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVCQ---PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred CHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 4556677777777665544 45778999999999999999999999999854 456788999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHh---cCChhHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH
Q 005106 439 NSVISSVTPLGWMYQERSL---YCEGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE 513 (714)
Q Consensus 439 ~~aI~~~p~~~~ay~~rg~---~~~~~eAl~d~~kAi~LdP-~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~ 513 (714)
.+++...|+.+.++..... .++.++|+..|+++++.+| .....+..+|.++.++|++++|+..|+++++++|+ +.
T Consensus 168 ~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~ 247 (656)
T PRK15174 168 RTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA 247 (656)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 9999999998877755422 3566999999999999987 44455566789999999999999999999999996 78
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 514 CLELRFCFFLALEDYQA----ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 514 ~~~~R~~~~~~lgd~e~----Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
.+.++|.++..+|++++ |+..|+++++++|++. .+...++.+....+++++|
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~------~a~~~lg~~l~~~g~~~eA------------------ 303 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV------RIVTLYADALIRTGQNEKA------------------ 303 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHCCCHHHH------------------
Confidence 88899999999999996 8999999999999983 4555556666666777777
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
+..++++++++|.++.++.++|.++.++|++++|+..|+++++.+|+++..+...|.++..+|++++|++.|+++++++|
T Consensus 304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 78899999999999999999999999999999999999999999999998888899999999999999999999999988
Q ss_pred CH
Q 005106 670 SF 671 (714)
Q Consensus 670 ~~ 671 (714)
+.
T Consensus 384 ~~ 385 (656)
T PRK15174 384 SH 385 (656)
T ss_pred hh
Confidence 83
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=262.22 Aligned_cols=307 Identities=11% Similarity=-0.069 Sum_probs=222.8
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh----------------HhhHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS----------------IAGLARL 424 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a----------------~~~lg~~ 424 (714)
+.+.....++++++..++. ..+++.+|.++..+|++++|+..|++|++.+|... ...+|.+
T Consensus 284 ~~~~A~~~l~~aL~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKD---SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 4556677777766654433 56788999999999999999999999998854321 1234778
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHH------------
Q 005106 425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASS------------ 488 (714)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~------------ 488 (714)
+...|++++|+..|+++++.+|+...++..+|.. ++.++|+..|++|++++|++..++.+++.+
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 8899999999999999999999988888887653 566999999999999999998887666554
Q ss_pred ------------------------------HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 489 ------------------------------LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 489 ------------------------------l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
+...|++++|+..|+++++++|+ +..++.++.+|..+|++++|+..|++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44679999999999999999996 77788899999999999999999999
Q ss_pred HHhhCCCchhhh-hhHHHHH----------HH---------------------------HHHHHhhhhhhHH--------
Q 005106 538 ILTLSPDYRMFE-GRVAASQ----------LH---------------------------MLVREHIDNWTIA-------- 571 (714)
Q Consensus 538 al~L~P~~~~~~-~~~~a~~----------~~---------------------------~~l~~~~~~~~~A-------- 571 (714)
+++++|++.... ..+.... .. ........+.++|
T Consensus 521 al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p 600 (1157)
T PRK11447 521 LAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP 600 (1157)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 999999985421 1110000 00 0000011111111
Q ss_pred ---HHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005106 572 ---DCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (714)
Q Consensus 572 ---~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 647 (714)
..++.+.+.....+++. |+..|+++++++|.++++++++|.++..+|++++|+..++++++.+|++..++..+|++
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 12223333333334555 66677777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 005106 648 LYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 648 ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
+..+|++++|++.|++++++.|+
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCcc
Confidence 77777777777777777776543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-21 Score=230.73 Aligned_cols=313 Identities=13% Similarity=0.061 Sum_probs=196.2
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLN 439 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~ 439 (714)
.+.....++++++..+.. ..+++++|.++...|++++|+..|+++++.+ +..++..++.++...|++++|+..+.
T Consensus 481 ~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 481 LAKAREAFEKALSIEPDF---FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334445555544433322 3456677777777777777777777777663 34456667777777777777777777
Q ss_pred HHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHH
Q 005106 440 SVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LEC 514 (714)
Q Consensus 440 ~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~ 514 (714)
+++..+|.....+...+. .++.++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|+ +..
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 777777766555555433 244578888888888888888888888888888888888888888888888885 666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH---------------HHHHhhhh
Q 005106 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA---------------DCWLQLYD 579 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A---------------~~~~~l~~ 579 (714)
+...+.++..+|++++|+..|+++++.+|++..... ....+....+++++| ..|..++.
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 711 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI------GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGD 711 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH------HHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHH
Confidence 777778888888888888888888888887643211 111111111111111 11222222
Q ss_pred ccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 005106 580 RWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 580 ~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
.....+++. |+..++++++..|.+ ..+++.|.++.++|++++|+..++++++.+|++..+++++|.++..+|++++|+
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 222233333 555666666666655 455556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCCHH-HHHHHHHHhhcc
Q 005106 659 RKAEESIQMKRSFE-AFFLKAYALADS 684 (714)
Q Consensus 659 ~~ye~Ai~i~~~~~-a~~~~~~~~~~~ 684 (714)
..|++++.+.|++. +++..|+++...
T Consensus 791 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 791 KHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 66666666666555 555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=250.24 Aligned_cols=307 Identities=11% Similarity=-0.009 Sum_probs=234.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH--------------
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW-------------- 450 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~-------------- 450 (714)
..+|.++...|++++|+..|++|++.+| ..++..+|.++..+|++++|+..|+++++.+|+...
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 3569999999999999999999999854 567889999999999999999999999999987542
Q ss_pred HHHHHH----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHH-------
Q 005106 451 MYQERS----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELR------- 518 (714)
Q Consensus 451 ay~~rg----~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R------- 518 (714)
.+..+| ..++.++|+..|++|++++|+++.++.++|.++..+|++++|+..|++|++++|+ ..++..+
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 112222 1245599999999999999999999999999999999999999999999999996 5544333
Q ss_pred -----------------------------------HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHH
Q 005106 519 -----------------------------------FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE 563 (714)
Q Consensus 519 -----------------------------------~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~ 563 (714)
+.++...|++++|+..|+++++++|++.... ..++.+..
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~------~~LA~~~~ 506 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLT------YRLAQDLR 506 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHH
Confidence 2345578999999999999999999985422 12222222
Q ss_pred hhhhhhHHHHHHhhhhc---------------cccccccc-hHHH-----------------------------------
Q 005106 564 HIDNWTIADCWLQLYDR---------------WSSVDDIG-SLSV----------------------------------- 592 (714)
Q Consensus 564 ~~~~~~~A~~~~~l~~~---------------~~~~~d~~-al~~----------------------------------- 592 (714)
...++++|...++-.-. +...++.. |+..
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 22222222211111000 00001100 1111
Q ss_pred -----HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 593 -----IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 593 -----~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
..+.++..|.++.+++.+|.++.++|++++|+..|+++++++|++++++.++|.++...|++++|++.|++++++
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 123355789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 005106 668 KRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 668 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
.|+.. +.+..|.++.... -...-+++++.++.
T Consensus 667 ~p~~~~~~~~la~~~~~~g----~~~eA~~~~~~al~ 699 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALG----DTAAAQRTFNRLIP 699 (1157)
T ss_pred CCCChHHHHHHHHHHHhCC----CHHHHHHHHHHHhh
Confidence 99876 7788888776433 23444555555554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=243.74 Aligned_cols=266 Identities=11% Similarity=-0.036 Sum_probs=232.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh-hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY-SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~-a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
...+++++|.++.. ++.++|+..|.+++...|.. ...++|.++...|++++|+..|.+++...|... .+...|.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~~~la~all 553 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DLLAAANTAQ 553 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HHHHHHHHHH
Confidence 45688999999987 89999999999999886543 233457777899999999999999877755533 3444432
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
.++.++|+..|++|++++|++...+..++..+..+|++++|+..|++|++++|++..+.++|.++.++|++++|+..|+
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3566999999999999999999999988888888999999999999999999998888999999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
++++++|++. .+....+.+.....++++| +..++++++++|+++.+++++|.++..
T Consensus 634 ~AL~l~Pd~~------~a~~nLG~aL~~~G~~eeA------------------i~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 634 AALELEPNNS------NYQAALGYALWDSGDIAQS------------------REMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHhCCCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999994 3445555555555666666 789999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a 673 (714)
+|++++|+..|++|++++|+++......|+++....+++.|.+.|+|+..++|.--|
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a 746 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSI 746 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchh
Confidence 999999999999999999999999999999999999999999999999999998773
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=216.12 Aligned_cols=299 Identities=14% Similarity=0.088 Sum_probs=248.1
Q ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005106 377 ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE 454 (714)
Q Consensus 377 ~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~ 454 (714)
.+.+..+.++-+.|+-++..|+|++||++|++||++.|. -.|.+++-+|...|++.+-+++.++|++++|+...+++.
T Consensus 109 e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~R 188 (606)
T KOG0547|consen 109 EERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLR 188 (606)
T ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 344556788899999999999999999999999999665 346789999999999999999999999999999999988
Q ss_pred HHh----cCChhHHHHHHHH------------------------------HHh--cCCC---------------------
Q 005106 455 RSL----YCEGDKRWEDLDK------------------------------ATA--LDPT--------------------- 477 (714)
Q Consensus 455 rg~----~~~~~eAl~d~~k------------------------------Ai~--LdP~--------------------- 477 (714)
|+. ++..++|+.|.+- -+. -.|.
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 842 2222333332110 000 0000
Q ss_pred -----------------------------------------------C---------hHHHHHHHHHHHhcCCHHHHHHH
Q 005106 478 -----------------------------------------------L---------SYPYMYRASSLMTKQNVEAALAE 501 (714)
Q Consensus 478 -----------------------------------------------~---------~~ay~~rg~~l~~l~r~~eAl~~ 501 (714)
+ +.++..||.-+.-.|++-+|..+
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 0 56778889999999999999999
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 502 INRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 502 ~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
|+++|+++|. +..|..|+.+|....+-++-..+|++|..+||+|+. .++.++.+.-.++++++|
T Consensus 349 ~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d------vYyHRgQm~flL~q~e~A--------- 413 (606)
T KOG0547|consen 349 FDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD------VYYHRGQMRFLLQQYEEA--------- 413 (606)
T ss_pred HHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc------hhHhHHHHHHHHHHHHHH---------
Confidence 9999999996 455777999999999999999999999999999954 666777788888899999
Q ss_pred cccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 581 ~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
+++|+++++++|.++.+|..++.++.|+++++++|..++.+++.-|+-+|.+..-|.+|.++++|++|+..
T Consensus 414 ---------~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 414 ---------IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred ---------HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC------HH-HHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 005106 661 AEESIQMKRS------FE-AFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 661 ye~Ai~i~~~------~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (714)
|++||.+.|. .. .+-.||..+.--. +--.--++||+.|+
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk---~d~~~a~~Ll~KA~ 530 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVLQWK---EDINQAENLLRKAI 530 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhhchh---hhHHHHHHHHHHHH
Confidence 9999999998 44 6777777776532 22233445555554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=213.87 Aligned_cols=292 Identities=16% Similarity=0.034 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHHHHHh
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL----GWMYQERSL 457 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~----~~ay~~rg~ 457 (714)
...+.+|..+...|++++|+..|.++++.+|. .++..+|.++...|++++|+..+++++...+.. ..++...|.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 44567899999999999999999999999654 457789999999999999999999988853221 233444432
Q ss_pred ----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-H-----HHHHHHHHHHhcCC
Q 005106 458 ----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-E-----CLELRFCFFLALED 527 (714)
Q Consensus 458 ----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-~-----~~~~R~~~~~~lgd 527 (714)
.+++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.. . .+..++.++...|+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 1455999999999999999999999999999999999999999999999988752 1 23457888999999
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC-hhH
Q 005106 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-GVL 606 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~-~~~ 606 (714)
+++|+..|+++++++|++. .+...++.+....+++++| +..++++++.+|.+ ..+
T Consensus 196 ~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 196 LDAARALLKKALAADPQCV------RASILLGDLALAQGDYAAA------------------IEALERVEEQDPEYLSEV 251 (389)
T ss_pred HHHHHHHHHHHHhHCcCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHChhhHHHH
Confidence 9999999999999999973 3444555555566666666 78899999999987 467
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHhhccC
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF-LKAYALADSS 685 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~-~~~~~~~~~~ 685 (714)
+..++.++..+|++++|+..+++++++.|+.. .+..+|.++...|++++|+..++++++..|+...+. +-+..++...
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 88999999999999999999999999999875 459999999999999999999999999999999665 3444443221
Q ss_pred CCCCchhhHHHHHHHhh
Q 005106 686 QDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 686 ~~~~~~~~~~~~~~~~~ 702 (714)
..-....+.++|+.+
T Consensus 331 --~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 331 --EGRAKESLLLLRDLV 345 (389)
T ss_pred --CccchhHHHHHHHHH
Confidence 122333455555544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=211.37 Aligned_cols=318 Identities=15% Similarity=0.161 Sum_probs=250.3
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLN 439 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~~~G~~~~A~~~~~ 439 (714)
.+..+.....++.|-++. .+.|-|+.-+|...|++++-+++..+||+++|.+ ++..++.++-.+|++++|+.+.+
T Consensus 131 Y~eAIkyY~~AI~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 131 YDEAIKYYTQAIELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVT 207 (606)
T ss_pred HHHHHHHHHHHHhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhh
Confidence 345556666666644432 5777899999999999999999999999998877 46778889999999999987764
Q ss_pred ------------------HHHh----------------------------------------------------------
Q 005106 440 ------------------SVIS---------------------------------------------------------- 443 (714)
Q Consensus 440 ------------------~aI~---------------------------------------------------------- 443 (714)
+.+.
T Consensus 208 v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l 287 (606)
T KOG0547|consen 208 VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEAL 287 (606)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHH
Confidence 0000
Q ss_pred -c------------------------CC--------CcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHH
Q 005106 444 -S------------------------VT--------PLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRA 486 (714)
Q Consensus 444 -~------------------------~p--------~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg 486 (714)
. .. ..+.++..||- .|..-+|..||+++|.|+|.+...|..||
T Consensus 288 ~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a 367 (606)
T KOG0547|consen 288 EKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRA 367 (606)
T ss_pred HhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHH
Confidence 0 00 01334444442 24457888999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH-HHHHHHHHHHh
Q 005106 487 SSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA-ASQLHMLVREH 564 (714)
Q Consensus 487 ~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~-a~~~~~~l~~~ 564 (714)
.+|+++++.++-..+|++|..+||+ ++.|+.||.++.-+++|++|+.||+++++|+|+++..+.+.. +.+..+.+...
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999995 999999999999999999999999999999999976665544 44444455554
Q ss_pred hhhhhHH--------HHHHhhhhccccccccc-hHHHHHHHHHhCCC------ChhHHHHHHHHHHH-cCChHHHHHHHH
Q 005106 565 IDNWTIA--------DCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP------KGVLYFRQSLLLLR-LNCPEAAMRSLQ 628 (714)
Q Consensus 565 ~~~~~~A--------~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~------~~~~~~~~g~~L~~-lg~~eeAl~~~~ 628 (714)
-..++++ +++.=..+.+-+..+++ |+..|+.|+++.|. ++-.+..+|.++.+ .+++.+|+..++
T Consensus 448 m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~ 527 (606)
T KOG0547|consen 448 MKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLR 527 (606)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHH
Confidence 4444443 33333334444446666 78899999999999 88888899988776 678889999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 629 LARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 629 ~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
+|++++|..-.|+-.+|.+..+.|+.+||+..||+|+.+.++-.- -+.+|.|++
T Consensus 528 KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E-~~~a~s~ae 581 (606)
T KOG0547|consen 528 KAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESE-MVHAYSLAE 581 (606)
T ss_pred HHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999999999887652 233444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-21 Score=230.80 Aligned_cols=289 Identities=11% Similarity=-0.049 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-h---h-hHhhHHHHHHHhCC-------------------------H-
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-I---Y-SIAGLARLGYIKGH-------------------------K- 431 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-~---~-a~~~lg~~~~~~G~-------------------------~- 431 (714)
..++.+++....+.|++++|...|+++....+ . . ...+++.+|..++. .
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 455 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLP 455 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhh
Confidence 45667888899999999999999999987421 1 2 22366666665544 2
Q ss_pred --HHHHHHHHHHHhcCCC--cHHHHHHHHhc---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 432 --LWAYEKLNSVISSVTP--LGWMYQERSLY---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504 (714)
Q Consensus 432 --~~A~~~~~~aI~~~p~--~~~ay~~rg~~---~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~k 504 (714)
..+...+.+++...|. .+.+|+++|.+ ++.++|+..|.+++...|++. .+..+|.++...|++++|+..|++
T Consensus 456 ~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 456 GIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2345566677777788 88899888754 444789999999999999754 455667777899999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH--------HHHHHHHHHHhhhhhhHHHHHHh
Q 005106 505 ILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA--------ASQLHMLVREHIDNWTIADCWLQ 576 (714)
Q Consensus 505 AL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~--------a~~~~~~l~~~~~~~~~A~~~~~ 576 (714)
++...|....+...|.++...|++++|++.|+++++++|++........ ...-...++..++.-..++.|..
T Consensus 535 a~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~ 614 (987)
T PRK09782 535 ISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVA 614 (987)
T ss_pred HhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 8887777666777888899999999999999999999998754322111 00111111222221112445666
Q ss_pred hhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHH
Q 005106 577 LYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 655 (714)
Q Consensus 577 l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~e 655 (714)
++......++.+ |+..++++++++|+++.+++++|.+|..+|++++|+..|++|++++|+++++++++|+++..+|+++
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 666666666666 7888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCCHH
Q 005106 656 EGLRKAEESIQMKRSFE 672 (714)
Q Consensus 656 eAl~~ye~Ai~i~~~~~ 672 (714)
+|+..|++|++++|++.
T Consensus 695 eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 695 ATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 88888888888888874
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=213.77 Aligned_cols=263 Identities=14% Similarity=0.146 Sum_probs=222.1
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHH-HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC--
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLAR-LGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC-- 459 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a--~~~lg~-~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~-- 459 (714)
...++|..|++.++|++|.+.|+.+=++.|... +-.... ++..+.+..-. ..-...|..+|+.+..|...|++.
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls-~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS-YLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH-HHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 346788889999999999998888755543221 111122 33333333322 122457788999999999998753
Q ss_pred --ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 460 --EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 460 --~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
+.+.|+..|.+||.+||++++||.-+|-=+.....+|.|...|++||..+|. +.+|+-.|.+|.++|+++.|+-.|+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 4499999999999999999999999999999999999999999999999995 8999999999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
+|++++|.+. ....-.|...+..++.++| |..|++|+-+||.++...|.+|.+|.-
T Consensus 514 kA~~INP~ns------vi~~~~g~~~~~~k~~d~A------------------L~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 514 KAVEINPSNS------VILCHIGRIQHQLKRKDKA------------------LQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred hhhcCCccch------hHHhhhhHHHHHhhhhhHH------------------HHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 9999999983 3444455666666777777 889999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++++++|+.-++..-++.|++.-+++-+|.++-.+|+.+.|+..|-=|..++|.=+
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999744
|
|
| >KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-23 Score=214.06 Aligned_cols=193 Identities=21% Similarity=0.263 Sum_probs=159.6
Q ss_pred CCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCC--CCCHHH
Q 005106 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN--GVTPNL 254 (714)
Q Consensus 177 ~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~--~i~~~~ 254 (714)
-+...+||+|+|++++|+|||+|||++|.|||+|++|||.|+.+..|.+++ ...++|+.+|+|||||++. .+..+.
T Consensus 40 ~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~--t~~eAF~~lLrYiYtg~~~l~~~~ed~ 117 (620)
T KOG4350|consen 40 TSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQE--TNSEAFRALLRYIYTGKIDLAGVEEDI 117 (620)
T ss_pred hcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccc--ccHHHHHHHHHHHhhcceecccchHHH
Confidence 356689999999999999999999999999999999999999999999995 7799999999999999987 234678
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCChHHHHHHhcccccc
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQ 334 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~~~v~~ll~~~~~~ 334 (714)
+++.|..|++|++..|..+-++||...+. .+|+..+.+.|..++.++|.+.|++|+.+|-.+.|.++.+..+ +.+.++
T Consensus 118 lld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~L-Sk~sL~ 195 (620)
T KOG4350|consen 118 LLDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRL-SKDSLK 195 (620)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhh-hHHHHH
Confidence 89999999999999999999999999996 6999999999999999999999999999888776666655543 233332
Q ss_pred chh---hhccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhhh
Q 005106 335 HRS---IMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAE 377 (714)
Q Consensus 335 ~r~---~~v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a~ 377 (714)
+.+ ....++--.|.++.+|-+++.+..+ ..+++ ++++|.
T Consensus 196 e~l~RDsFfApE~~IFlAv~~W~~~Nske~~---k~~~~-~VRLPL 237 (620)
T KOG4350|consen 196 ELLARDSFFAPELKIFLAVRSWHQNNSKEAS---KVLLE-LVRLPL 237 (620)
T ss_pred HHHhhhcccchHHHHHHHHHHHHhcCchhhH---HHHHH-HHhhhh
Confidence 222 2255666779999999998864322 23333 366664
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=199.15 Aligned_cols=183 Identities=16% Similarity=0.081 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+.+|++|++++|+++.+|+++|.++..+|++++|+..|++|++++|+ ..++.++|.++...|++++|+.+|+++++
T Consensus 81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555666666666666666666666666666666666666666666665 55566666666666666666666666666
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
++|++.. +. .. ..+.....++++| +..+.+++...+. ..|. .+.+...+|+.
T Consensus 161 ~~P~~~~---~~-~~---~~l~~~~~~~~~A------------------~~~l~~~~~~~~~--~~~~-~~~~~~~lg~~ 212 (296)
T PRK11189 161 DDPNDPY---RA-LW---LYLAESKLDPKQA------------------KENLKQRYEKLDK--EQWG-WNIVEFYLGKI 212 (296)
T ss_pred hCCCCHH---HH-HH---HHHHHccCCHHHH------------------HHHHHHHHhhCCc--cccH-HHHHHHHccCC
Confidence 6666531 00 00 0001111222222 4455554433221 2222 34555556655
Q ss_pred HHH--H----HHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHH
Q 005106 621 EAA--M----RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR-SFE 672 (714)
Q Consensus 621 eeA--l----~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~-~~~ 672 (714)
.++ + ..++.+.+++|+.+++++++|.++..+|++++|+..|++|++++| +|.
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 213 SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 332 2 222333466777777788888888888888888888888888775 665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=201.49 Aligned_cols=236 Identities=13% Similarity=0.023 Sum_probs=182.5
Q ss_pred ccchHHHHHHHHHHHhc---c---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHH
Q 005106 396 RKEYDEAEHLFEAAVNA---G---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRW 465 (714)
Q Consensus 396 ~g~y~eA~~~f~~AL~~---~---~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl 465 (714)
.++.+.++..+.++|.. + .+..++.+|.++...|++++|+..|+++++++|+++.+|.++|.+ +++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35678899999999863 2 245688899999999999999999999999999999999999863 6779999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCC
Q 005106 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL-SPD 544 (714)
Q Consensus 466 ~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L-~P~ 544 (714)
..|++|++++|++..+|.++|.++...|++++|+..|+++++++|+.........+....+++++|+..|++++.. +|+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 9999999999999999999999999999999999999999999996332122223456788999999999877654 444
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (714)
+. +...+.. ...+++.++.+.. +...++++++++|..+++|+++|.++.++|++++|+
T Consensus 199 ~~---~~~~~~~-------~lg~~~~~~~~~~------------~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 199 QW---GWNIVEF-------YLGKISEETLMER------------LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred cc---HHHHHHH-------HccCCCHHHHHHH------------HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 31 1111111 1222222211000 122345667888999999999999999999999999
Q ss_pred HHHHHHHHhCC-CChhHHHHHHHHHHhcCC
Q 005106 625 RSLQLARQHAA-SDHERLVYEGWILYDTSH 653 (714)
Q Consensus 625 ~~~~~Al~l~P-~~~ea~~~~G~~ly~~G~ 653 (714)
..|++|++++| ++.+..+-+..+....++
T Consensus 257 ~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 257 ALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 99999999996 888877766665554444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-19 Score=196.64 Aligned_cols=279 Identities=17% Similarity=0.108 Sum_probs=227.6
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc------hhhHhhHHHHHHHhCCHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH------IYSIAGLARLGYIKGHKLWA 434 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~------~~a~~~lg~~~~~~G~~~~A 434 (714)
..+.....++++++..++. ..++..+|.++...|++++|+..++++++..+ ..++..+|.++...|++++|
T Consensus 50 ~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDPET---VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred ChHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3456777888877665533 45778899999999999999999999988632 24577889999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 435 YEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLS-----YPYMYRASSLMTKQNVEAALAEINRI 505 (714)
Q Consensus 435 ~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~-----~ay~~rg~~l~~l~r~~eAl~~~~kA 505 (714)
+..|.++++..|....++..++. .+++++|+..|+++++.+|... ..|.++|.++.+.|++++|+..|+++
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999998887777766643 2556999999999999999864 36788999999999999999999999
Q ss_pred HhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 005106 506 LGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (714)
Q Consensus 506 L~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 584 (714)
++.+|+ ...+..+|.++...|++++|+..|+++++.+|++.. .+...+..+....+++++|
T Consensus 207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~l~~~~~~~g~~~~A------------- 268 (389)
T PRK11788 207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS-----EVLPKLMECYQALGDEAEG------------- 268 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH-----HHHHHHHHHHHHcCCHHHH-------------
Confidence 999997 777888999999999999999999999999998731 1222233333334444444
Q ss_pred cccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh--cCCHHHHHHHHH
Q 005106 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD--TSHCEEGLRKAE 662 (714)
Q Consensus 585 ~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~--~G~~eeAl~~ye 662 (714)
+..++++++.+|+...+ ..+|.++.+.|++++|++.++++++..|++.......+..+.. .|+.++|+..++
T Consensus 269 -----~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 269 -----LEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred -----HHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 77899999999987655 8999999999999999999999999999998766555554432 569999999888
Q ss_pred HHHh
Q 005106 663 ESIQ 666 (714)
Q Consensus 663 ~Ai~ 666 (714)
+.++
T Consensus 343 ~~~~ 346 (389)
T PRK11788 343 DLVG 346 (389)
T ss_pred HHHH
Confidence 7775
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-19 Score=213.48 Aligned_cols=311 Identities=10% Similarity=-0.033 Sum_probs=213.3
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+.+...+++++...++. .. ++.+|.++...|++++|+..|++++++.| ..++..+|.++...|+.+.|++.+
T Consensus 98 ~~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDK---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 5667778888877665544 23 77889999999999999999999999854 446667888888888888888887
Q ss_pred HHHHhcCCCc-------HHHHHHHHhc-------CCh---hHHHHHHHHHHhcCCCChH-------HHHHHHHHHHhcCC
Q 005106 439 NSVISSVTPL-------GWMYQERSLY-------CEG---DKRWEDLDKATALDPTLSY-------PYMYRASSLMTKQN 494 (714)
Q Consensus 439 ~~aI~~~p~~-------~~ay~~rg~~-------~~~---~eAl~d~~kAi~LdP~~~~-------ay~~rg~~l~~l~r 494 (714)
+++.. +|+. +.+...+..+ +++ ++|++.|+++++..|.++. ++..+..++...|+
T Consensus 174 ~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 174 DDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 76665 4432 1111111100 112 6677777777765433332 22333445567778
Q ss_pred HHHHHHHHHHHHhcCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh----hhhh-HHHHHHHHHHHHhhhh
Q 005106 495 VEAALAEINRILGFKLA-LE-CLELRFCFFLALEDYQAALCDVQAILTLSPDYRM----FEGR-VAASQLHMLVREHIDN 567 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~P~-~~-~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~----~~~~-~~a~~~~~~l~~~~~~ 567 (714)
+++|+..|+++++..|. |. .....+.+|..+|++++|+..|+++++.+|.+.. .... ..+....+....+.+.
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 88888888888777542 32 2223466788888888888888888877776511 0000 0011111111111111
Q ss_pred hh-----------------------HHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 005106 568 WT-----------------------IADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (714)
Q Consensus 568 ~~-----------------------~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA 623 (714)
.+ ..+.+..+...+...++.. |+..++++++..|.++.+++++|.++...|++++|
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 11 1111222222333334444 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHH
Q 005106 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFL 676 (714)
Q Consensus 624 l~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~ 676 (714)
+..+++|++++|++.++++.+|.++..+|++++|.+.++++++..|+.. +..+
T Consensus 413 ~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 413 ENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 4443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-19 Score=210.07 Aligned_cols=309 Identities=11% Similarity=-0.008 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
..++..+|..+...|++++|+..|+++|+++| ..++.++|.++...|++++|+..++++++.+|+++. +..+|.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 45678899999999999999999999999854 456788999999999999999999999999999998 888775
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH-------------------------------------
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL------------------------------------- 499 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl------------------------------------- 499 (714)
.++.++|+..|++|++++|+++.++..+|.++...++.++|+
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 366799999999999999999999999999998777766544
Q ss_pred ---------HHHHHHHhc---CCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhC---CCchhhhhhHHHHHHHH
Q 005106 500 ---------AEINRILGF---KLALECLE-----LRFCFFLALEDYQAALCDVQAILTLS---PDYRMFEGRVAASQLHM 559 (714)
Q Consensus 500 ---------~~~~kAL~l---~P~~~~~~-----~R~~~~~~lgd~e~Al~d~~~al~L~---P~~~~~~~~~~a~~~~~ 559 (714)
+.++++++. +|+....+ .+..++...|++++|+..|+++++.+ |++.... .+
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--------la 279 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--------VA 279 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--------HH
Confidence 444455543 23211111 12334578899999999999999996 4442211 12
Q ss_pred HHHHhhhhhhHHHHH-------------------Hhhhhccccccccc-hHHHHHHHHHhCCCC---------------h
Q 005106 560 LVREHIDNWTIADCW-------------------LQLYDRWSSVDDIG-SLSVIYQMLESDAPK---------------G 604 (714)
Q Consensus 560 ~l~~~~~~~~~A~~~-------------------~~l~~~~~~~~d~~-al~~~~qaL~l~P~~---------------~ 604 (714)
.+....+++++|..+ ..++......++++ |+..++++++.+|.. .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 222223333333222 22222223335555 778999999998832 3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
.++..+|.++...|++++|+..++++++..|++++++.++|.++...|++++|++.+++|++++|++. .++.+|++..+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999976 88888887665
Q ss_pred cCCCCCchhhHHHHHHHhhcC
Q 005106 684 SSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~ 704 (714)
.. --.....+++++++-
T Consensus 440 ~~----~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 440 LQ----EWRQMDVLTDDVVAR 456 (765)
T ss_pred hC----CHHHHHHHHHHHHHh
Confidence 44 234445555555543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-20 Score=190.69 Aligned_cols=213 Identities=19% Similarity=0.219 Sum_probs=183.9
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhc
Q 005106 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECL-ELRFCFFLAL 525 (714)
Q Consensus 447 ~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~-~~R~~~~~~l 525 (714)
.+|..+..||++ .+|+..|..||++||++..+++.||.+|..+|+-..|+.++.++|+++|++.++ ..||.+++++
T Consensus 43 ElGk~lla~~Q~---sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARGQL---SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHhhhH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 467888888777 999999999999999999999999999999999999999999999999996555 5599999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCCh
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKG 604 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~ 604 (714)
|.+++|++||+++|.-+|++-. ...+...+..+.++.....++.. |..-+|.. ++..+++.|++.||++
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~---~~eaqskl~~~~e~~~l~~ql~s-------~~~~GD~~~ai~~i~~llEi~~Wda 189 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGL---VLEAQSKLALIQEHWVLVQQLKS-------ASGSGDCQNAIEMITHLLEIQPWDA 189 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcch---hHHHHHHHHhHHHHHHHHHHHHH-------HhcCCchhhHHHHHHHHHhcCcchh
Confidence 9999999999999999998621 12233333444444444444432 22224445 6789999999999999
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.++..|+.++..-|.+..|+.+.+.|-++..||.+.++..+.++|..|+.+.++..-++-++++|+--
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=192.58 Aligned_cols=218 Identities=14% Similarity=0.064 Sum_probs=166.5
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 005106 429 GHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILG 507 (714)
Q Consensus 429 G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~-r~~eAl~~~~kAL~ 507 (714)
+++.+|+..+..++... ++.++|+..+++||+++|++..+|.+||.++..+| ++++|+..++++|+
T Consensus 34 ~~~~~a~~~~ra~l~~~-------------e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~ 100 (320)
T PLN02789 34 PEFREAMDYFRAVYASD-------------ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE 100 (320)
T ss_pred HHHHHHHHHHHHHHHcC-------------CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence 45566666666555443 34478888888888888888888888888888888 57888888888888
Q ss_pred cCCC-HHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 005106 508 FKLA-LECLELRFCFFLALEDY--QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (714)
Q Consensus 508 l~P~-~~~~~~R~~~~~~lgd~--e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 584 (714)
.+|+ +.+|+.|++++..+|+. ++++..+++++++||++.. +...++-+....+.|+++
T Consensus 101 ~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~------AW~~R~w~l~~l~~~~ee------------- 161 (320)
T PLN02789 101 DNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH------AWSHRQWVLRTLGGWEDE------------- 161 (320)
T ss_pred HCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH------HHHHHHHHHHHhhhHHHH-------------
Confidence 8885 78888888888888874 6788888888888888843 444444444455556655
Q ss_pred cccchHHHHHHHHHhCCCChhHHHHHHHHHHHc---CCh----HHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCC
Q 005106 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL---NCP----EAAMRSLQLARQHAASDHERLVYEGWILYD----TSH 653 (714)
Q Consensus 585 ~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l---g~~----eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~ 653 (714)
+..++++|+.||.+..+|+++|.++..+ |.. ++++....++|.++|+|..+++++|+++.. +++
T Consensus 162 -----L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 162 -----LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred -----HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 7888899999999999999999998876 333 467888889999999999999999999988 567
Q ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 654 CEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 654 ~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
..+|+...++++..+|... |--..+-.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 7889999999999887654 33333333333
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=191.14 Aligned_cols=102 Identities=11% Similarity=0.015 Sum_probs=84.6
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCCh
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEG 461 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a--~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~ 461 (714)
..|+..+..|+|+.|+..|..||.++|... |.++..+|..+|++.+|+++-.+.++++|.++.+|...|. .+++
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 468888899999999999999999966543 4578889999999999999999999999999999988874 4677
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSL 489 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l 489 (714)
++|+..|.+.++.+|++...+.+|+.++
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999998865555555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=199.67 Aligned_cols=204 Identities=13% Similarity=0.059 Sum_probs=184.8
Q ss_pred cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHH
Q 005106 413 GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASS 488 (714)
Q Consensus 413 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~ 488 (714)
+.+.+|-.+|+++-.+++++.|++.|.+||.++|+++.+|-.+|. ...+|+|...|++|+..||.+..||+.+|.+
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 356678889999999999999999999999999999999998874 2455999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh
Q 005106 489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (714)
Q Consensus 489 l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~ 567 (714)
|+++++++.|.-.|+||+++||. .......|.++.++|+.++|++-|++|+.+||.++ .....++.+.-...+
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~------l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP------LCKYHRASILFSLGR 572 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhhcc
Confidence 99999999999999999999996 56666789999999999999999999999999994 355556666666666
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 568 ~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
+++| +..+++.-++-|..+..++..|.++-++|..+-|+--+--|++++|.-+++
T Consensus 573 ~~ea------------------l~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 573 YVEA------------------LQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred hHHH------------------HHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 6666 889999999999999999999999999999999999999999999997764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=198.99 Aligned_cols=180 Identities=12% Similarity=-0.050 Sum_probs=152.4
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
.++|+..+++|++++|+++.+|..+|.++..+|++++|+..|++|++++|+ +..++.+|.++..+|++++|+..|++++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999997 7888899999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC-CCChhHHHHHHHHHHHcC
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~-P~~~~~~~~~g~~L~~lg 618 (714)
+++|++..+. .....+.....++++| +..++++++.. |+++.++.++|.++..+|
T Consensus 400 ~l~P~~~~~~------~~~~~~~~~~g~~eeA------------------~~~~~~~l~~~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 400 KLDPTRAAAG------ITKLWITYYHTGIDDA------------------IRLGDELRSQHLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred hcCCCChhhH------HHHHHHHHhccCHHHH------------------HHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence 9999985321 1111111222334444 77889999875 889999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
++++|...+++++...|++..+...++.++..+|+ +|.+.+++.++
T Consensus 456 ~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 456 KHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred CHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 99999999999999999999999999999998884 66665555444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=201.45 Aligned_cols=200 Identities=14% Similarity=0.004 Sum_probs=173.9
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK---------QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAA 531 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l---------~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~A 531 (714)
++|+..|++|++++|+++.+|.++|.++..+ +++++|+..+++|++++|+ +.++..+|.++..+|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 7999999999999999999999999987744 3489999999999999996 88888999999999999999
Q ss_pred HHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 005106 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (714)
Q Consensus 532 l~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g 611 (714)
+..|++|++++|++.. +...++.+....+++++| +..++++++++|.++.+++.++
T Consensus 358 ~~~~~~Al~l~P~~~~------a~~~lg~~l~~~G~~~eA------------------i~~~~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 358 SLLFKQANLLSPISAD------IKYYYGWNLFMAGQLEEA------------------LQTINECLKLDPTRAAAGITKL 413 (553)
T ss_pred HHHHHHHHHhCCCCHH------HHHHHHHHHHHCCCHHHH------------------HHHHHHHHhcCCCChhhHHHHH
Confidence 9999999999999954 444455555566666666 8899999999999999888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 612 LLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~-P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
.++..+|++++|+..++++++.+ |+++.++.++|.++..+|++++|.+.+++.....|... +..+-+-.+....
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 88999999999999999999885 88999999999999999999999999999988888866 5555544444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-18 Score=182.28 Aligned_cols=220 Identities=12% Similarity=0.006 Sum_probs=165.2
Q ss_pred cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----C-ChhHHHHHHHHH
Q 005106 397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----C-EGDKRWEDLDKA 471 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~-~~~eAl~d~~kA 471 (714)
++|.+|..+|++++. ..++.++|+..++++|.++|++..+|..||.. + ..++++..++++
T Consensus 34 ~~~~~a~~~~ra~l~---------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~ 98 (320)
T PLN02789 34 PEFREAMDYFRAVYA---------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDV 98 (320)
T ss_pred HHHHHHHHHHHHHHH---------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 355566555555433 33566677777777777777777777777542 2 247888888899
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 005106 472 TALDPTLSYPYMYRASSLMTKQNV--EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (714)
Q Consensus 472 i~LdP~~~~ay~~rg~~l~~l~r~--~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~ 548 (714)
++.+|++..+|.+||.++..+|+. ++++..++++|+++|. ..+|..|++++..+|++++|+.+++++|++||+|..
T Consensus 99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s- 177 (320)
T PLN02789 99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS- 177 (320)
T ss_pred HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh-
Confidence 999999999999999888888874 6788888899999984 788888999888889999999999999999988833
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccc-cc-chHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD-DI-GSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEA 622 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~-d~-~al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~ee 622 (714)
+.+.++.+....... .... .. +.+..+.++|.++|.+..+|++++-++.. +++..+
T Consensus 178 -----AW~~R~~vl~~~~~l-------------~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 178 -----AWNQRYFVITRSPLL-------------GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred -----HHHHHHHHHHhcccc-------------ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 222222222111000 0000 01 13678889999999999999999999998 566788
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 623 AMRSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
|++.+.+++..+|+++.|+-.+.-++..
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 9999999999999999999999999875
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-17 Score=169.09 Aligned_cols=278 Identities=11% Similarity=0.087 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH---
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS--- 456 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg--- 456 (714)
.++++|.++.+|+..|+-..|+.++.+.|+++|.. |-.-+|.++.++|.+++|..+|+..|.-+|+.+.....+.
T Consensus 71 ~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~ 150 (504)
T KOG0624|consen 71 NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLA 150 (504)
T ss_pred hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 35778888999999999999999999988886544 4556788889999999999999999888886544332211
Q ss_pred ----------h------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 005106 457 ----------L------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRF 519 (714)
Q Consensus 457 ----------~------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~ 519 (714)
+ -|+...|++..++.++..|=++..|..|+.+|...|....||.+.+.|-.+..+ .+.++--.
T Consensus 151 ~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis 230 (504)
T KOG0624|consen 151 LIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKIS 230 (504)
T ss_pred hHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHH
Confidence 0 135578888888999999999999999999999999999999999999988775 77778788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH
Q 005106 520 CFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (714)
Q Consensus 520 ~~~~~lgd~e~Al~d~~~al~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~ 598 (714)
.++...||.+.++..++..+++||++.- |-...........+..+.+-.++-+ |+ +.++-.+..+.
T Consensus 231 ~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~-~t------------~cle~ge~vlk 297 (504)
T KOG0624|consen 231 QLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKH-WT------------ECLEAGEKVLK 297 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-HH------------HHHHHHHHHHh
Confidence 8899999999999999999999999743 1111222222222222222111110 11 12667888999
Q ss_pred hCCCChhHHHH----HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 599 SDAPKGVLYFR----QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 599 l~P~~~~~~~~----~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.+|.-+...+| .-.|...-+.+.||++-...+|+.+|+|++++--++.++.-.-.||.|+..|++|.+.++|..
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 99986655443 334455578899999999999999999999999999999999999999999999999999876
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=182.85 Aligned_cols=255 Identities=16% Similarity=0.105 Sum_probs=107.0
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhc----cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc---CC
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNA----GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---CE 460 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~----~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~---~~ 460 (714)
.++.++...|++++|.+.+++++.. +....|..+|.+...+|+++.|+..|++++...+.....+.+...+ ++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~ 92 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5688999999999999999765533 2344566688899999999999999999999988877777666554 45
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--L-ALECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~--P-~~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
+++|+..+.++.+-.+ ++..+.....++...++++++...++++.+.. | ++..+..+|.++...|+.++|+++|++
T Consensus 93 ~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5899998888888765 46777888889999999999999999988765 3 467788899999999999999999999
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
|++++|++... .....-+.-..++.+++ ...+.+.....|.++.+|...|.++..+
T Consensus 172 al~~~P~~~~~------~~~l~~~li~~~~~~~~------------------~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 172 ALELDPDDPDA------RNALAWLLIDMGDYDEA------------------REALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHH-TT-HHH------HHHHHHHHCTTCHHHHH------------------HHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHcCCCCHHH------HHHHHHHHHHCCChHHH------------------HHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 99999998432 22222122222233332 4456666667799999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
|++++|+..++++++.+|+|+..+...|.+|...|+.++|+..+++++..
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999998764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-16 Score=177.07 Aligned_cols=307 Identities=15% Similarity=0.106 Sum_probs=237.9
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
.+.+..|.+++.......-..+..+|++|..+..+|+|++|..+|.+|++.+ +..+++|+|.+|..+|+...|...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 4566677778776665555567789999999999999999999999999983 3668899999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHhcC--------ChhHHHHHHHHHHhcCCCChHHH----------------------------
Q 005106 439 NSVISSVTPLGWMYQERSLYC--------EGDKRWEDLDKATALDPTLSYPY---------------------------- 482 (714)
Q Consensus 439 ~~aI~~~p~~~~ay~~rg~~~--------~~~eAl~d~~kAi~LdP~~~~ay---------------------------- 482 (714)
.+....+|++-....-.|..+ ..++|.....++++..|.++.+|
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILES 445 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 999999998655554444321 12677777778888777776555
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHHHhc-CC--CHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 483 ----------MYRASSLMTKQNVEAALAEINRILGF-KL--ALE--------CLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 483 ----------~~rg~~l~~l~r~~eAl~~~~kAL~l-~P--~~~--------~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
+|.|..++.+|.+..|...|.+|+.. .| +.+ .-||++.++..+++++.|...|..+++.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 55666677788888888888888876 21 222 3588999999999999999999999999
Q ss_pred CCCchhhhhhHH----------------------------HHHHHHHHHHhhhhhhHHH-----------------HHHh
Q 005106 542 SPDYRMFEGRVA----------------------------ASQLHMLVREHIDNWTIAD-----------------CWLQ 576 (714)
Q Consensus 542 ~P~~~~~~~~~~----------------------------a~~~~~~l~~~~~~~~~A~-----------------~~~~ 576 (714)
.|+|...+.|.. +..+.|.+-.....|-.|. ..++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 999987665543 3444443333333332221 2233
Q ss_pred hhhcc-------cccc-----cc-chHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 005106 577 LYDRW-------SSVD-----DI-GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (714)
Q Consensus 577 l~~~~-------~~~~-----d~-~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 643 (714)
|++.| ++.+ -+ .|++.|.++|..+|.|..+=+..|.+|..-|++.+|...+.+.++--.++.+++.|
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN 685 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN 685 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence 33322 2222 12 27889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 644 EGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 644 ~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
+|.|+..+|+|-.|++.|+..++.-
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998863
|
|
| >KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-18 Score=183.74 Aligned_cols=177 Identities=20% Similarity=0.300 Sum_probs=152.7
Q ss_pred cccCCCCCccEEEEEcC-----eEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCC
Q 005106 174 SMSGDQVLRNVVFRIHE-----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN 248 (714)
Q Consensus 174 ~~~~~~~~~DV~l~v~~-----~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~ 248 (714)
.|.+++..+||.|+||+ ..|||||.|||..|..|.+||++++.|+...+|.+++ +.|.+|..+|+|+|++.+.
T Consensus 107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpd--vepaaFl~~L~flYsdev~ 184 (521)
T KOG2075|consen 107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPD--VEPAAFLAFLRFLYSDEVK 184 (521)
T ss_pred hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCC--cChhHhHHHHHHHhcchhh
Confidence 46788889999999974 5899999999999999999999999999889999995 9999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCChH------
Q 005106 249 GVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDE------ 322 (714)
Q Consensus 249 ~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~~------ 322 (714)
+..+++..+|.+|++|.++.|.+.|.+||...+.....++.+-+-|..++-++|+..|++++..++.+.|..+
T Consensus 185 -~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did 263 (521)
T KOG2075|consen 185 -LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDID 263 (521)
T ss_pred -hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehh
Confidence 9999999999999999999999999999999998666666666669999999999999999999988866644
Q ss_pred ----HHHHHhccccccchhhhccchhhhHHHHHHHhhhcCC
Q 005106 323 ----RVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359 (714)
Q Consensus 323 ----~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~ 359 (714)
.+++++.++.++ +. +...++++++|+.....
T Consensus 264 ~~~dt~~evl~r~~l~-----~~-e~~lfeA~lkw~~~e~~ 298 (521)
T KOG2075|consen 264 STRDTYEEVLRRDTLE-----AR-EFRLFEAALKWAEAECQ 298 (521)
T ss_pred hHHHHHHHHHhhcccc-----hh-HHHHHHHHHhhccCcch
Confidence 344444444442 22 55779999999977654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=177.04 Aligned_cols=281 Identities=16% Similarity=0.087 Sum_probs=219.8
Q ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005106 377 ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE 454 (714)
Q Consensus 377 ~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~ 454 (714)
.+..+.+.-...+|......++|.+|+..|..||+..|.. .|.+++.++.+.|+++.|.-+.++.+++.|...+.+.+
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r 122 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR 122 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence 3333445555678999999999999999999999995544 56678999999999999999999999999988777766
Q ss_pred HHhcCCh----hHHH---H---------HHHHHHhcC------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 005106 455 RSLYCEG----DKRW---E---------DLDKATALD------PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA- 511 (714)
Q Consensus 455 rg~~~~~----~eAl---~---------d~~kAi~Ld------P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~- 511 (714)
-++.... .+|- . .+.....+- |....+-.-.+.+++.+|++++|+.+--.++.+++.
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n 202 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN 202 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch
Confidence 6554211 1111 1 111222222 333345556788999999999999999999999995
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SL 590 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al 590 (714)
.++++.||.++...++.+.|+..|+++++++|+.... ..+.-....+..-..+-+.+ -.-+.+. |-
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~----------fk~G~y~~A~ 269 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDA----------FKNGNYRKAY 269 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhH----------hhccchhHHH
Confidence 8999999999999999999999999999999998432 11222222222222222222 2224444 67
Q ss_pred HHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 591 SVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 591 ~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.+|..||.+||.+. .+|.||+.+..++|+..||+.+.+.|+.|+|..-.|+..+|.|...++.+++|+++|++|+.
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999875 56999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 005106 667 MKRS 670 (714)
Q Consensus 667 i~~~ 670 (714)
..-+
T Consensus 350 ~~~s 353 (486)
T KOG0550|consen 350 LEKD 353 (486)
T ss_pred hccc
Confidence 8766
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-16 Score=173.57 Aligned_cols=270 Identities=14% Similarity=0.040 Sum_probs=225.7
Q ss_pred HHHHhccchHHHHHHHHHHHhccchhh---HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhH
Q 005106 391 CVRLLRKEYDEAEHLFEAAVNAGHIYS---IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDK 463 (714)
Q Consensus 391 ~~~~~~g~y~eA~~~f~~AL~~~~~~a---~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~e 463 (714)
..+...++|.+-.+.++..++.+|-.. -..+| +++.+|+..+=+..=.+.+..+|+.+-.|+.-|.| +.+.+
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHH
Confidence 344566788998899999999864332 23455 78889998888888889999999988888888865 56699
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005106 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 464 Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~ 542 (714)
|...|.||+.+||++..+|...|.++.-.|..++|++.|.+|-++=|. ..-....|.=|..+++++-|..-|.+|+.+.
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999885 3334567888999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH----HhCCCC---hhHHHHHHHHHH
Q 005106 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML----ESDAPK---GVLYFRQSLLLL 615 (714)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL----~l~P~~---~~~~~~~g~~L~ 615 (714)
|+++. ..+..|.+.-.-+.|.+|.- .|..++ +..+.. .-.+.|+|.++.
T Consensus 411 P~Dpl------v~~Elgvvay~~~~y~~A~~------------------~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 411 PSDPL------VLHELGVVAYTYEEYPEALK------------------YFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred CCcch------hhhhhhheeehHhhhHHHHH------------------HHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 99843 55566666666667777743 344444 233333 245899999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 616 ~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
++|+++||+..||+||.+.|.+++.|-..|.++..+|+++.|+..|.+|+.|+|+.. +==+.+.++.|+.
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~~ 537 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDSE 537 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999997 7777779999943
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-16 Score=157.26 Aligned_cols=186 Identities=16% Similarity=0.063 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|+++++.+|++..++..+|.++..+|++++|+..|++++++.|+ ...+.+.+.++..+|++++|+..|+++++
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 44444445555555555556666666666666666666666666666554 44455555566666666666666666655
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
..+... ........+.+....+++++| ...++++++.+|.++.++..+|.++..+|++
T Consensus 128 ~~~~~~----~~~~~~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 128 DPLYPQ----PARSLENAGLCALKAGDFDKA------------------EKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred cccccc----chHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 422110 011111222222222222222 4456666666666667788899999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
++|+..+++++++.|++.+.++..+.++...|+.++|....++...+.|
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999988887766644
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.5e-15 Score=163.49 Aligned_cols=284 Identities=12% Similarity=0.051 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH-HHHHHHh-
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW-MYQERSL- 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~-ay~~rg~- 457 (714)
+.......|...+..|+++.|.+...++.+..+. -++...|++...+|+++.|...+.++.+..|+... +...++.
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3445567899999999999999999999888443 34555688999999999999999999998887642 2222222
Q ss_pred ---cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHH-HHHHHH---HHhcCCHH
Q 005106 458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECL-ELRFCF---FLALEDYQ 529 (714)
Q Consensus 458 ---~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~-~~R~~~---~~~lgd~e 529 (714)
.+++++|++.+++..+..|+++.++.-.|.++.++|++++|+..+.+.++.++ ++..+ ..+..+ +...++.+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 24559999999999999999999999999999999999999999999998754 33322 222222 24556667
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH--
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY-- 607 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~-- 607 (714)
+++..+.++.+..|+.. .....+......+....+++++| +..+++++...|.+....
T Consensus 243 ~~~~~L~~~~~~~p~~~--~~~~~l~~~~a~~l~~~g~~~~A------------------~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHR--RHNIALKIALAEHLIDCDDHDSA------------------QEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred cCHHHHHHHHHHCCHHH--hCCHHHHHHHHHHHHHCCChHHH------------------HHHHHHHHhhCCCcccchhH
Confidence 77788999999888420 00122333333344444444444 889999999999998642
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCHHHHHHHHHHhhc
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDH--ERLVYEGWILYDTSHCEEGLRKAE--ESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~--ea~~~~G~~ly~~G~~eeAl~~ye--~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
.-+.......++.++++..++++++..|+++ ..+..+||+++.+|++++|...+| ++++++|+.+.+..-|-++..
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 3344444556888999999999999999999 899999999999999999999999 688899999987777777665
Q ss_pred cC
Q 005106 684 SS 685 (714)
Q Consensus 684 ~~ 685 (714)
..
T Consensus 383 ~g 384 (409)
T TIGR00540 383 AG 384 (409)
T ss_pred cC
Confidence 54
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-15 Score=149.36 Aligned_cols=199 Identities=14% Similarity=0.014 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
..+++++|..+...|++++|+..|+++++.+| ..++..+|.++..+|++++|++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~----------------------- 87 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDS----------------------- 87 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH-----------------------
Confidence 45667777777777888888887777777643 33455566666666665555554
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A-LECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P--~-~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
|+++++++|++..++.++|.++...|++++|+..|++++...+ . ...+.++|.++...|++++|+..|++
T Consensus 88 -------~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 88 -------FRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred -------HHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555666666666666777777777777777777777776432 1 34455566677777777777777777
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
+++.+|++.. +....+.+....+++++| +..++++++..|.++..+...+.++...
T Consensus 161 ~~~~~~~~~~------~~~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T TIGR02521 161 ALQIDPQRPE------SLLELAELYYLRGQYKDA------------------RAYLERYQQTYNQTAESLWLGIRIARAL 216 (234)
T ss_pred HHHhCcCChH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 7777776522 222333333334444444 5566667777777777777788888888
Q ss_pred CChHHHHHHHHHHHHhCC
Q 005106 618 NCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P 635 (714)
|+.++|.+..+.+.+..|
T Consensus 217 ~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 217 GDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred hhHHHHHHHHHHHHhhCc
Confidence 999988888887776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=162.25 Aligned_cols=253 Identities=15% Similarity=0.087 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-------cHHHHH
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-------LGWMYQ 453 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~-------~~~ay~ 453 (714)
+.-+-++.++....+.++|++.+++-+..+. .+.-...|.+.+.+.|+++|+..|+...+-+|- ..++++
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 3334566777777788888888888777743 333445778888899999999988888887762 222333
Q ss_pred HHHhcCChhHHHHHH-HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHH
Q 005106 454 ERSLYCEGDKRWEDL-DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAA 531 (714)
Q Consensus 454 ~rg~~~~~~eAl~d~-~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~A 531 (714)
-+.. ..++..+ ..+..+|.--++.-.-.|+-|...++++.|+..|+|||++||+ ..+|..-|-=|.++++-..|
T Consensus 308 v~~~----~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 308 VKND----KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred HHhh----hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHH
Confidence 2211 1222222 3456666666666677788888888888888888888888886 56677777778888888888
Q ss_pred HHHHHHHHhhCCCc-hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHH
Q 005106 532 LCDVQAILTLSPDY-RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFR 609 (714)
Q Consensus 532 l~d~~~al~L~P~~-~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~ 609 (714)
+..|++|++++|.+ .+++|-+.++... +=.. ||=.|++|+++-|+++..|.-
T Consensus 384 i~sYRrAvdi~p~DyRAWYGLGQaYeim--------------------------~Mh~YaLyYfqkA~~~kPnDsRlw~a 437 (559)
T KOG1155|consen 384 IESYRRAVDINPRDYRAWYGLGQAYEIM--------------------------KMHFYALYYFQKALELKPNDSRLWVA 437 (559)
T ss_pred HHHHHHHHhcCchhHHHHhhhhHHHHHh--------------------------cchHHHHHHHHHHHhcCCCchHHHHH
Confidence 88888888888854 4444444333322 1111 466889999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+|.++.++|+.+||+.+|.+|+...-.++.+++.+|.++-.+++.+||.+.|++=+.
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-15 Score=170.30 Aligned_cols=311 Identities=13% Similarity=0.045 Sum_probs=239.3
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~ 459 (714)
..++...+++.+.+|+|-.|+.+|.+||.++ .++.-.++|.+..++|+.+.|+..+.+|++++|....++..+|.+-
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVD 243 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 5667777888899999999999999999985 4556678888999999999999999999999999999998887541
Q ss_pred -------ChhHHHHHHHHHHhcCCCCh-------------------------------------HHHHHHHHHHHhcCCH
Q 005106 460 -------EGDKRWEDLDKATALDPTLS-------------------------------------YPYMYRASSLMTKQNV 495 (714)
Q Consensus 460 -------~~~eAl~d~~kAi~LdP~~~-------------------------------------~ay~~rg~~l~~l~r~ 495 (714)
.+..++..+.+|...+|.+| ..++.+|-.++.+|+|
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 22778888999999999985 4466677777777777
Q ss_pred HHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh--------
Q 005106 496 EAALAEINRILGFKLAL--ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-------- 565 (714)
Q Consensus 496 ~eAl~~~~kAL~l~P~~--~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~-------- 565 (714)
++|...|-.+++.+|+. -.++-.|..|...|++++|+.+|+++++..|++.. +...+|.+....
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e------tm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE------TMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH------HHHHHHhHHHhhhhhhHHHH
Confidence 77777777777777753 22334566777777777777777777777777642 222222222222
Q ss_pred -----------hhhhHHHHHHhhhhccccccccchHHHHHHHHHh-----CCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 005106 566 -----------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES-----DAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (714)
Q Consensus 566 -----------~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l-----~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~ 629 (714)
.....+++|+.+..-|-.-|-..+|..|..|+.+ .|--++..+|.|...+.+|.++.|...+..
T Consensus 398 ~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 398 KASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 2245566788887777777777788889988832 355678899999999999999999999999
Q ss_pred HHHh-----CCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHH
Q 005106 630 ARQH-----AASDH-----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLL 698 (714)
Q Consensus 630 Al~l-----~P~~~-----ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (714)
|+.. +++.+ -..||++.++-.++++++|-..|...++..|+|. +|.-.|--.-|++-+++.|.-+-..|
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 9988 33332 2489999999999999999999999999999999 77777744558888888876555444
Q ss_pred H
Q 005106 699 E 699 (714)
Q Consensus 699 ~ 699 (714)
+
T Consensus 558 ~ 558 (1018)
T KOG2002|consen 558 N 558 (1018)
T ss_pred h
Confidence 3
|
|
| >KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-17 Score=157.45 Aligned_cols=171 Identities=16% Similarity=0.287 Sum_probs=137.9
Q ss_pred ccCCCCCccEEEEEc---CeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCC
Q 005106 175 MSGDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT 251 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~---~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~ 251 (714)
+.+.+.|+|++|.++ ++.|++||.|||++|++++ |.++-.|.. .+..+. ++++++|...++||||++++ +.
T Consensus 60 L~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~d--Dad~Ea~~t~iRWIYTDEid-fk 133 (280)
T KOG4591|consen 60 LLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDLD--DADFEAFHTAIRWIYTDEID-FK 133 (280)
T ss_pred HhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhccc--ccCHHHHHHhheeeeccccc-cc
Confidence 347788999999998 5789999999999999986 444443333 334445 59999999999999999998 76
Q ss_pred HH--HHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC-------CCChH
Q 005106 252 PN--LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD-------CLNDE 322 (714)
Q Consensus 252 ~~--~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~-------~L~~~ 322 (714)
.+ -+.+++..|++|+++-|+..|++-+.+.++ ++||+.++++|++.++.+|...|-++|..+.++ +++..
T Consensus 134 ~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~a~FaqMs~a 212 (280)
T KOG4591|consen 134 EDDEFLLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGKADFAQMSAA 212 (280)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccChHHHHhccHH
Confidence 54 468999999999999999999999999995 999999999999999999999999999888776 56666
Q ss_pred HHHHHhccccccchh--hhccchhhhHHHHHH
Q 005106 323 RVVEIFSHANRQHRS--IMVGLASFSLYCLLS 352 (714)
Q Consensus 323 ~v~~ll~~~~~~~r~--~~v~~~~~~~~~~l~ 352 (714)
-+.+++.+....-.. ..++.+..++-||+.
T Consensus 213 LLYklId~kTe~~LHk~iki~REDVl~LYfie 244 (280)
T KOG4591|consen 213 LLYKLIDGKTENPLHKAIKIEREDVLFLYFIE 244 (280)
T ss_pred HHHHHHcCCCcchhHHhhhccccceeeehhhh
Confidence 677777555443222 236666666666654
|
|
| >PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-17 Score=149.68 Aligned_cols=102 Identities=25% Similarity=0.449 Sum_probs=91.6
Q ss_pred CCCCCccEEEEEc-CeEEEeehhhhhcCCHHHHHhhcCC-CCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCC-HH
Q 005106 177 GDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGS-FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT-PN 253 (714)
Q Consensus 177 ~~~~~~DV~l~v~-~~~f~aHr~VLAa~S~yF~amF~~~-~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~-~~ 253 (714)
+++.+||++|.++ +++|+|||.||+++|+||+.||.++ +.+....+|.++ ++++++|..+++|+|+|++. ++ .+
T Consensus 6 ~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~-~~~~~ 82 (111)
T PF00651_consen 6 NSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIE-INSDE 82 (111)
T ss_dssp HHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEE-EE-TT
T ss_pred cCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCccc-CCHHH
Confidence 4567999999999 8999999999999999999999998 677777788888 49999999999999999998 87 99
Q ss_pred HHHHHHHHHhhhChhhHHHHHHHHHHhh
Q 005106 254 LLLEILIFANKFCCERLKDACDRKLASL 281 (714)
Q Consensus 254 ~v~~lL~aAd~~~v~~L~~~C~~~L~~~ 281 (714)
++.+++.+|++|+++.|++.|..+|.+.
T Consensus 83 ~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 83 NVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp THHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 9999999999999999999999999764
|
The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A .... |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-16 Score=162.00 Aligned_cols=239 Identities=17% Similarity=0.041 Sum_probs=211.5
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHhcC
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW-------MYQERSLYC 459 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~-------ay~~rg~~~ 459 (714)
++|.+++..|.+.+|.+.++.+|+. .+.+.+..++++|....++..|+..|...+...|.+-. +|...+++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~- 306 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ- 306 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH-
Confidence 7899999999999999999999998 78999999999999999999999999999999986444 44444444
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
++|++.|..++.++|.+.++....|.-|.--++.+-|+..|+|+|++-. +++.+.|.|.++..-++++-++..|++|
T Consensus 307 --~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 --EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred --HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999977 4898899999999999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
+...-+. -+.||.|-+++......+|+- |-.+|+-||..||+++++++|+|.+-.+-
T Consensus 385 lstat~~----------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 385 LSTATQP----------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred HhhccCc----------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 9986543 134888888888888888877 55689999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc
Q 005106 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 651 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~ 651 (714)
|+.++|...++.|-.+.|+..|..+|+|.+-...
T Consensus 443 G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~~ 476 (478)
T KOG1129|consen 443 GDILGARSLLNAAKSVMPDMAEVTTNLQFMSVHY 476 (478)
T ss_pred CchHHHHHHHHHhhhhCccccccccceeEEeeec
Confidence 9999999999999999999999888888664433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=167.76 Aligned_cols=244 Identities=18% Similarity=0.105 Sum_probs=112.4
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 005106 419 AGLARLGYIKGHKLWAYEKLNSVISSV--TPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK 492 (714)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~--p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l 492 (714)
..+|.++++.|++++|++.+.+.+... |++...|..+|.+ ++.++|+..|++.+..+|..+..+.+++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 356899999999999999997766554 6666666666643 456999999999999999999999999888 799
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 005106 493 QNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLS--PDYRMFEGRVAASQLHMLVREHIDNWTI 570 (714)
Q Consensus 493 ~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~--P~~~~~~~~~~a~~~~~~l~~~~~~~~~ 570 (714)
+++++|+..+.++.+..+++..+.....++...|+++++...++++.... |++ .......+.+....+++++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS------ARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-------HHHHHHHHHHHHHCCHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCCHHH
Confidence 99999999999999887777777666778999999999999999988755 333 2234445555555666666
Q ss_pred HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 571 A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
| +.++++||+++|+++.++...+.++...|+.++|.+.++...+..|+++..+..+|+++..
T Consensus 165 A------------------~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 165 A------------------LRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp H------------------HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred H------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 6 8899999999999999999999999999999999999999999989999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCC
Q 005106 651 TSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQD 687 (714)
Q Consensus 651 ~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~ 687 (714)
+|++++|+..|+++++.+|+.. ....-|.+|.-++--
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999666 777778887766543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-16 Score=149.28 Aligned_cols=125 Identities=12% Similarity=0.055 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 466 ~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
+.|++|++++|++ +.++|.++..+|++++|+..|++++.++|. +..+.++|.++..+|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4577888888875 556788888888888888888888888885 777777888888888888877777666666665
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (714)
+ +.+++++|.++.++|++++|+
T Consensus 91 ~----------------------------------------------------------~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 91 H----------------------------------------------------------PEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred C----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHH
Confidence 4 456777888888888888888
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHhc
Q 005106 625 RSLQLARQHAASDHERLVYEGWILYDT 651 (714)
Q Consensus 625 ~~~~~Al~l~P~~~ea~~~~G~~ly~~ 651 (714)
..|++|++++|++++.+.++|+++..+
T Consensus 113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 113 EAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 888888888888888888888877654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=168.46 Aligned_cols=252 Identities=14% Similarity=0.027 Sum_probs=172.9
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 005106 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV 495 (714)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~ 495 (714)
.-|..+.+.|+.-+|.-.|+.||..+|..+.+|+.+|.. ..-..||..+.++++|||++..+.+.+|+.|...|.-
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhH
Confidence 356667777777777777777777777777777777653 2335677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHH----------HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh
Q 005106 496 EAALAEINRILGFKLALECLELRFC----------FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (714)
Q Consensus 496 ~eAl~~~~kAL~l~P~~~~~~~R~~----------~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~ 565 (714)
.+|+..+.+=|..+|.... .+.. -....-.+..-.+.|-.|...+|.-.. ..+...+|-|....
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~--l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~D----pdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVH--LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKID----PDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHhCccchh--ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCC----hhHHhhhHHHHhcc
Confidence 7777777777766664321 1110 000111122223333334444442100 01222222223333
Q ss_pred hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005106 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (714)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (714)
+.+++ |+.||+.||...|++..+|+++|-.|..-++.+||+..|++|++|.|.+..+.||+|
T Consensus 444 ~efdr------------------aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 444 GEFDR------------------AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred hHHHH------------------HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 33333 488999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhcCC
Q 005106 646 WILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCP 705 (714)
Q Consensus 646 ~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (714)
.....+|.|+||+..|=.||.|++..- .-.|. |..|.++++-|.-||.|-
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~-------~~~~~---~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSR-------NHNKA---PMASENIWQTLRLALSAM 555 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhccc-------ccccC---CcchHHHHHHHHHHHHHc
Confidence 999999999999999999999998621 11121 233778888888777763
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-14 Score=164.94 Aligned_cols=282 Identities=12% Similarity=0.105 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc---
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY--- 458 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~--- 458 (714)
.+....++..+.+|++++|+..+..+|+++| ..+|+.+|.+|.++|+.++++...-.|.-++|++...|...+.+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 3445566777888999999999999999954 55788999999999999999999999999999988888776543
Q ss_pred -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH--HHH--H--HHHHHhcCCHHHH
Q 005106 459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC--LEL--R--FCFFLALEDYQAA 531 (714)
Q Consensus 459 -~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~--~~~--R--~~~~~~lgd~e~A 531 (714)
+..+.|.-+|++||.++|.+...+.+|+.+|.++|++..|+..|.+++++.|..+. ... + +-.+...++-+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34489999999999999999999999999999999999999999999999993221 111 1 2346666666777
Q ss_pred HHHHHHHHhhC------CC--------------------------------chhh----------------------hhh
Q 005106 532 LCDVQAILTLS------PD--------------------------------YRMF----------------------EGR 551 (714)
Q Consensus 532 l~d~~~al~L~------P~--------------------------------~~~~----------------------~~~ 551 (714)
++.+..++... |+ ...+ ..+
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 77666666511 11 0000 000
Q ss_pred H----------HHHHHHHHHHHhhhhhh-----HHHHHHhhhhccccccccc-hHHHHHHHHHhCCCC-hhHHHHHHHHH
Q 005106 552 V----------AASQLHMLVREHIDNWT-----IADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPK-GVLYFRQSLLL 614 (714)
Q Consensus 552 ~----------~a~~~~~~l~~~~~~~~-----~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~-~~~~~~~g~~L 614 (714)
+ ....+.+.+.+.+...+ ..+.++++.+.+...+.+. |+..+.+.+...++. +..|.++|.++
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 0 01222233333332222 3344455555556666666 778888888887654 56899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
..+|.+++|+..|.+++.++|++-++...++.+++.+|+.|+|+...++-+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999998866
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=146.33 Aligned_cols=124 Identities=14% Similarity=-0.034 Sum_probs=106.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 005106 500 AEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (714)
Q Consensus 500 ~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~ 579 (714)
+.|+++|+++|+. ++.+|.++..+|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----------------------------------- 56 (144)
T PRK15359 14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW----------------------------------- 56 (144)
T ss_pred HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------------------------
Confidence 4577888777764 456777777788777777766666666555
Q ss_pred ccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH
Q 005106 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659 (714)
Q Consensus 580 ~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~ 659 (714)
++.+|+++|.++.++|++++|+..|++|++++|+++++++++|.++..+|++++|+.
T Consensus 57 -----------------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 57 -----------------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred -----------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 660 KAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 660 ~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
.|++|++++|++. +|.+||.++..
T Consensus 114 ~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 114 AFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999988 99999988753
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.5e-14 Score=165.78 Aligned_cols=80 Identities=10% Similarity=-0.108 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
++...++.++...|+..+|++.++..+...|.|++....+|.++-..|+..+|...++++..+.|+.. +.+.+|++..|
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 34556788888899999999999999999999999999999999999999999999999999988887 88888887665
Q ss_pred c
Q 005106 684 S 684 (714)
Q Consensus 684 ~ 684 (714)
-
T Consensus 497 l 497 (822)
T PRK14574 497 L 497 (822)
T ss_pred h
Confidence 4
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-13 Score=152.30 Aligned_cols=274 Identities=11% Similarity=0.029 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-chhhHh-hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH-H--
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIA-GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER-S-- 456 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~-~~~a~~-~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~r-g-- 456 (714)
++...+..|.....-|+|++|++...++-+.. ++..++ ..+.+..++|+++.|...+.++.+..|+...+..-+ +
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 44556788999999999999998888876652 222333 346677999999999999999999988864332111 1
Q ss_pred --hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH-HHHHHH---HhcCCHH
Q 005106 457 --LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE-LRFCFF---LALEDYQ 529 (714)
Q Consensus 457 --~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~-~R~~~~---~~lgd~e 529 (714)
.-+++++|++.++++++.+|+++.++.-++.+|+..|++++|+..+.+..+..+. ++... .++.++ ......+
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1245599999999999999999999999999999999999999888888877663 32221 222211 1111111
Q ss_pred HHHHHHHHHHhhC----CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 530 AALCDVQAILTLS----PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 530 ~Al~d~~~al~L~----P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
+....+.++++-- |+++. +...........++.++ |...+++++. .|+++.
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~------~~~~~A~~l~~~g~~~~------------------A~~~L~~~l~-~~~~~~ 297 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVA------LQVAMAEHLIECDDHDT------------------AQQIILDGLK-RQYDER 297 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHH------HHHHHHHHHHHCCCHHH------------------HHHHHHHHHh-cCCCHH
Confidence 1222233332222 32311 11111111122222222 2445555555 344444
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~ 682 (714)
+....+.+ ..+++++|+..+++.++..|+|++.+..+|.+++..|++++|...++++++++|+.+.|..-|-++.
T Consensus 298 l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~ 372 (398)
T PRK10747 298 LVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALD 372 (398)
T ss_pred HHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 33333322 2255555555555555556665555555566666666666666666666665555555554444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.6e-15 Score=148.33 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=132.2
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (714)
+|..|.+.|.+ ..|..-+++|++.||++..+|.-||.+|+.+|..+.|-..|++|+.++|+ .+.++|-|+++..+|
T Consensus 41 Lal~YL~~gd~---~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDY---AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 44555555444 66677789999999999999999999999999999999999999999996 788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 005106 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~ 606 (714)
++++|...|++|+. +|.| |.-++.
T Consensus 118 ~~~eA~q~F~~Al~-~P~Y-------------------------------------------------------~~~s~t 141 (250)
T COG3063 118 RPEEAMQQFERALA-DPAY-------------------------------------------------------GEPSDT 141 (250)
T ss_pred ChHHHHHHHHHHHh-CCCC-------------------------------------------------------CCcchh
Confidence 99999999999986 6887 223455
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
|-|.|.|-.++|.++.|...+++|++++|+++.+.-.+.-.+|+.|+|-.|-..+++--.--+
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 677777777777777777777777777777777777777777777777777777776554433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-14 Score=151.40 Aligned_cols=258 Identities=15% Similarity=0.150 Sum_probs=205.0
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCC-HHHHH-HHHHHHHhc-CCC----cHHHHHHHHh
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGH-KLWAY-EKLNSVISS-VTP----LGWMYQERSL 457 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a--~~~lg~~~~~~G~-~~~A~-~~~~~aI~~-~p~----~~~ay~~rg~ 457 (714)
.+.|.+...+.++++|+..|+...+.+|-.. +-...++++-+.+ -.-++ +....-|.. .|. -|+-|.-|+.
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~e 345 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSE 345 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHh
Confidence 4577888889999999999999887754321 1223444444443 22221 111112222 232 5677777765
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
- ++|+..|.+|+.|||....+|.-.|-=|+++++-..|+..|++||.++| +..+|+.+|.+|.-++-..=|+-.|+
T Consensus 346 H---EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 346 H---EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred H---HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 5 9999999999999999999999999999999999999999999999999 69999999999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLL 615 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~ 615 (714)
+|.++.|++. ..|..+++.....++.. |..+|-+|+...-.+..++.++|.++.
T Consensus 423 kA~~~kPnDs-------------------------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 423 KALELKPNDS-------------------------RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHhcCCCch-------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 9999999982 23334444444444444 588999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHH-------hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 616 RLNCPEAAMRSLQLARQ-------HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 616 ~lg~~eeAl~~~~~Al~-------l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++++.++|...|.+-++ ..|.--.|...++....+.+++++|-....++..-.+--|
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e 541 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE 541 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence 99999999999999999 6677788888899999999999999988888877654443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-13 Score=152.66 Aligned_cols=279 Identities=10% Similarity=-0.013 Sum_probs=211.4
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh---hHhhHHHHHHHhCCHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY---SIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~---a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
.+.....+....+..+. ..+.+...|.+..++|++++|..+|.+|.+..+.. .....++++...|+++.|.+.+
T Consensus 100 ~~~A~~~l~~~~~~~~~---~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 100 YAKAEKLIAKNADHAAE---PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred HHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444555554443332 23455567889999999999999999998874433 2233588999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 439 NSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYM----YRASSLMTKQNVEAALAEINRILGFKL 510 (714)
Q Consensus 439 ~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~----~rg~~l~~l~r~~eAl~~~~kAL~l~P 510 (714)
++.++.+|+++.++.-.+.. ++.++|+..+.+..+..+.....+. ..+.-+...+..++++..+.++.+-.|
T Consensus 177 ~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 177 DKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 99999999988887766542 4559999999999987555444332 222233455666677788999998888
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccc
Q 005106 511 -----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585 (714)
Q Consensus 511 -----~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~ 585 (714)
++..+...+..+...|++++|+..++++++..|++.... ...+ ..+..... +
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~----~~~l------------------~~~~~l~~-~ 313 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS----LPLC------------------LPIPRLKP-E 313 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch----hHHH------------------HHhhhcCC-C
Confidence 567777788899999999999999999999999984210 0011 11111111 1
Q ss_pred ccc-hHHHHHHHHHhCCCCh--hHHHHHHHHHHHcCChHHHHHHHH--HHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 586 DIG-SLSVIYQMLESDAPKG--VLYFRQSLLLLRLNCPEAAMRSLQ--LARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 586 d~~-al~~~~qaL~l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~--~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
+.. ++..++++++.+|+++ .+...+|.++.++|++++|.+.++ ++++.+|++.. +..+|.++..+|+.++|...
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 212 4778999999999999 899999999999999999999999 68889998766 55999999999999999999
Q ss_pred HHHHHhc
Q 005106 661 AEESIQM 667 (714)
Q Consensus 661 ye~Ai~i 667 (714)
|++++..
T Consensus 393 ~~~~l~~ 399 (409)
T TIGR00540 393 RQDSLGL 399 (409)
T ss_pred HHHHHHH
Confidence 9998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >smart00225 BTB Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=130.60 Aligned_cols=90 Identities=28% Similarity=0.471 Sum_probs=85.9
Q ss_pred cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 005106 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFA 262 (714)
Q Consensus 183 DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~lL~aA 262 (714)
||++.+||+.|++||.+|+++|+||++||.+++.++....|.+++ +++.+|+.+++|+|||++. ++.+++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLD-LPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceee-cCHHHHHHHHHHH
Confidence 799999999999999999999999999999999888888999984 9999999999999999999 9899999999999
Q ss_pred hhhChhhHHHHHH
Q 005106 263 NKFCCERLKDACD 275 (714)
Q Consensus 263 d~~~v~~L~~~C~ 275 (714)
++|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999994
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=158.18 Aligned_cols=225 Identities=13% Similarity=0.050 Sum_probs=181.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CC
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CE 460 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~ 460 (714)
+-.|+.+++.|.+-+|.-.|+.|++.+ |..||..||+++...++-..|+..+.++++++|++-.++..++-. +.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 578999999999999999999999984 677899999999999999999999999999999988888777532 23
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHH----HHH---HHHhcCCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhcCCHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMY----RAS---SLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLALEDYQA 530 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~----rg~---~l~~l~r~~eAl~~~~kAL~l~P---~~~~~~~R~~~~~~lgd~e~ 530 (714)
..+|+..+++=|+-.|....--.. ++. -+..-..+..=...|..|...+| +++....+|.+|.-.|+|+.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 389999999999988754322111 000 00111112233445555555555 58888889999999999999
Q ss_pred HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHH
Q 005106 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFR 609 (714)
Q Consensus 531 Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~ 609 (714)
|+.+|+.||..+|++ +..|..|+-.+..-++.. |++.|+|||++.|+.+++++|
T Consensus 449 aiDcf~~AL~v~Pnd-------------------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 449 AVDCFEAALQVKPND-------------------------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred HHHHHHHHHhcCCch-------------------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 999999999999998 445666666666656555 699999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAAS 636 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (714)
+|.....+|.++||...|=.||.+.+.
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999987
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-14 Score=153.55 Aligned_cols=246 Identities=17% Similarity=0.140 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC--------------
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-------------- 446 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~-~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p-------------- 446 (714)
.+...-.+|......+++..|++.|.++|+++ ....+.+.+.+|+.+|++...+..-.++++..-
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999996 222355678899999999998888887776421
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc
Q 005106 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL 525 (714)
Q Consensus 447 ~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l 525 (714)
..|.+|..++.+ +.|+..|.+++.---+ +.++-.++..++++.+..+.--++|. ..-....|..+...
T Consensus 303 r~g~a~~k~~~~---~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 303 RLGNAYTKREDY---EGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred HhhhhhhhHHhH---HHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc
Confidence 255677777555 8889999887754333 77888888999999999998888887 45456678899999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
|||..|+..|.+||..+|++.-.|++. |.||..|... ..+|.+.+.+|+++|+...
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNR------------------Aac~~kL~~~------~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNR------------------AACYLKLGEY------PEALKDAKKCIELDPNFIK 427 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHH------------------HHHHHHHhhH------HHHHHHHHHHHhcCchHHH
Confidence 999999999999999999985544433 3333333332 1237788999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-CCHHHHHHHHHH
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEE 663 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~-G~~eeAl~~ye~ 663 (714)
+|+++|.+|..+.++..|++.|+.|++++|++.++....+-|.-.+ |+..+- ..+++
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~e-e~~~r 485 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPE-ETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHH-HHHHh
Confidence 9999999999999999999999999999999999999988888764 333333 35555
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-13 Score=141.44 Aligned_cols=277 Identities=12% Similarity=0.036 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-------cHHHHHH
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTP-------LGWMYQE 454 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~-------~~~ay~~ 454 (714)
.-.-.+|.+++-.|++++|+.-|+++.-++|.. ++-..|-.+...|+++.--+........... .+...+.
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~ 312 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD 312 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh
Confidence 334568999999999999999999998886533 3334566778889888776666666665432 2333344
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005106 455 RSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALC 533 (714)
Q Consensus 455 rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~ 533 (714)
+..+ ..|+..-+|+|+++|++.++|.-.|.++..+||+++|+-.|+.|+.+.|. .++|..+.-+|+..|++.||..
T Consensus 313 ~K~~---~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 313 EKKF---ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhH---HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 4444 88999999999999999999999999999999999999999999999995 8988888889999999999999
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHH--HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 005106 534 DVQAILTLSPDYRMFEGRVAASQLHMLV--REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (714)
Q Consensus 534 d~~~al~L~P~~~~~~~~~~a~~~~~~l--~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g 611 (714)
--+-++.+=|+++. +..+.|.. .....--++| =..++.+|.+.|+...+-.-++
T Consensus 390 ~An~~~~~~~~sA~------~LtL~g~~V~~~dp~~rEKA------------------Kkf~ek~L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 390 LANWTIRLFQNSAR------SLTLFGTLVLFPDPRMREKA------------------KKFAEKSLKINPIYTPAVNLIA 445 (564)
T ss_pred HHHHHHHHhhcchh------hhhhhcceeeccCchhHHHH------------------HHHHHhhhccCCccHHHHHHHH
Confidence 99999999998832 33333211 1111112223 3478999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCC
Q 005106 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689 (714)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~ 689 (714)
.++.+-|+.+.++..+++++...||.. .|+.+|.++-.+..+++|+..|..|++++|..++ -+||+-+...+.||.
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~-sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR-TLRGLRLLEKSDDES 521 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH-HHHHHHHHHhccCCC
Confidence 999999999999999999999999855 8999999999999999999999999999999995 378888777766654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-12 Score=142.82 Aligned_cols=271 Identities=14% Similarity=0.026 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhH-HHHHHHhCCHHHHHHHHHHHH----hcCCCcHHHHHHHH
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGL-ARLGYIKGHKLWAYEKLNSVI----SSVTPLGWMYQERS 456 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~l-g~~~~~~G~~~~A~~~~~~aI----~~~p~~~~ay~~rg 456 (714)
.....+..|......|++++|+..++++++..|.+..... +..+...|++..+.....+++ ..+|....++...|
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 3455677899999999999999999999998765542211 445555565555555555554 45666555555443
Q ss_pred h----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H----HHHHHHHHHHHhcCC
Q 005106 457 L----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L----ECLELRFCFFLALED 527 (714)
Q Consensus 457 ~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~----~~~~~R~~~~~~lgd 527 (714)
. .+++++|+..++++++++|+++.++..+|.++.+.|++++|+..+++++...|. + ..+..++.++..+|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 2 255699999999999999999999999999999999999999999999998763 2 234568889999999
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC--CCChh
Q 005106 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKGV 605 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~--P~~~~ 605 (714)
+++|+..|++++...|..................... .....++-|-.+.+ .. .... +....
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~w~~~~~-------------~~--~~~~~~~~~~~ 265 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA-GHVDVGDRWEDLAD-------------YA--AWHFPDHGLAF 265 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc-CCCChHHHHHHHHH-------------HH--HhhcCcccchH
Confidence 9999999999988877321111110000100000000 00111211111111 10 1111 22223
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---------DHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---------~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
....++.++...|+.++|.+.++......-. ...+...++++++.+|++++|+....+|+.+-
T Consensus 266 ~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 266 NDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3346888899999999999999887664433 46778899999999999999999999998753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-13 Score=139.82 Aligned_cols=165 Identities=10% Similarity=-0.020 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH---HHHHHHHHHHhc--------C
Q 005106 462 DKRWEDLDKATALDPTLS---YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE---CLELRFCFFLAL--------E 526 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~---~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~---~~~~R~~~~~~l--------g 526 (714)
++|+..|++++..+|+++ .+++.+|.++..+|++++|+..|+++++..|+ +. +++.+|.++..+ |
T Consensus 50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 129 (235)
T TIGR03302 50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQT 129 (235)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHH
Confidence 555556666777777665 57899999999999999999999999999995 43 577889888876 8
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 005106 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~ 606 (714)
++++|+..|+++++.+|++..+. .....+.. +... ....
T Consensus 130 ~~~~A~~~~~~~~~~~p~~~~~~------~a~~~~~~-----------------------------~~~~------~~~~ 168 (235)
T TIGR03302 130 AAREAFEAFQELIRRYPNSEYAP------DAKKRMDY-----------------------------LRNR------LAGK 168 (235)
T ss_pred HHHHHHHHHHHHHHHCCCChhHH------HHHHHHHH-----------------------------HHHH------HHHH
Confidence 99999999999999999984211 10000000 0000 1123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
....|.++.+.|++++|+..++++++..|++ +++++++|+++..+|++++|.+.+++...-
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4578889999999999999999999997764 589999999999999999999877665543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-12 Score=153.45 Aligned_cols=322 Identities=9% Similarity=-0.015 Sum_probs=226.1
Q ss_pred hhhHHHHHHH--hhhcCCCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhH
Q 005106 344 SFSLYCLLSE--VAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGL 421 (714)
Q Consensus 344 ~~~~~~~l~~--V~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~l 421 (714)
......++.. +..+.. +.+.++++++++.+..++. ..++..++..+.+.++.++|++.+++++..++...++ +
T Consensus 99 n~~~~~llalA~ly~~~g-dyd~Aiely~kaL~~dP~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l 173 (822)
T PRK14574 99 NISSRGLASAARAYRNEK-RWDQALALWQSSLKKDPTN---PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-M 173 (822)
T ss_pred CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-H
Confidence 3445555533 444433 5678888998887766655 3344566888899999999999999999987664443 5
Q ss_pred HHHH--HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cC------------------------------------
Q 005106 422 ARLG--YIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YC------------------------------------ 459 (714)
Q Consensus 422 g~~~--~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~------------------------------------ 459 (714)
+.++ ...++..+|++.++++++.+|++..++.++-. ++
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 5544 44677777999999999999988877766411 00
Q ss_pred ------------ChhHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH-HHHHH
Q 005106 460 ------------EGDKRWEDLDKATALDPTLS-------YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE-CLELR 518 (714)
Q Consensus 460 ------------~~~eAl~d~~kAi~LdP~~~-------~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~-~~~~R 518 (714)
..+.|++.+++.+...|..+ .+.+-|=.++...|++.+++.+|+..-.-... |. +....
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 11457888888888554433 34456778888889999999999887754322 22 23445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC------ch-----hhhhhH------HHHHHHHHHHHhhh---------------
Q 005106 519 FCFFLALEDYQAALCDVQAILTLSPD------YR-----MFEGRV------AASQLHMLVREHID--------------- 566 (714)
Q Consensus 519 ~~~~~~lgd~e~Al~d~~~al~L~P~------~~-----~~~~~~------~a~~~~~~l~~~~~--------------- 566 (714)
|-.|+.++..++|+..|++++.-+|. .. .|+-.. .|..+...+....-
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 66888889999999999988875531 11 122111 12222222222110
Q ss_pred hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005106 567 NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (714)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (714)
+|.++... +.....-.++.+ |...++..+...|+|+.++..+|.++...|.+.+|+..++.+..++|++..+.+.+|
T Consensus 414 d~~~~~~l--~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTL--LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 11111110 011111124444 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 646 WILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 646 ~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.+..++|++++|-...+..++..|...
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 999999999999999999999888766
|
|
| >KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-14 Score=149.21 Aligned_cols=177 Identities=15% Similarity=0.153 Sum_probs=153.0
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceE--EeCCCCCCHHHHHHHHHhhccCCCCCCCH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDI--DLSENNISPSGLRIISDFSVTGSLNGVTP 252 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I--~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~ 252 (714)
+..++.-+||++..-|++.+.||..| ..|+||++||.|.++|+++..| +|+|++|+..+|..++.=+|.+++. |..
T Consensus 63 lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l 140 (488)
T KOG4682|consen 63 LFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKL 140 (488)
T ss_pred HHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccH
Confidence 34578889999999999999999999 6789999999999999999765 5677789999999999999999999 999
Q ss_pred HHHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHH
Q 005106 253 NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERV 324 (714)
Q Consensus 253 ~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v 324 (714)
+.|..++.+|..++++++.+.|.+.+...++ +.+++.+++.+..|+...+.+.|+++++.|+.. .++-+-+
T Consensus 141 ~dv~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm 219 (488)
T KOG4682|consen 141 SDVVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLM 219 (488)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHH
Confidence 9999999999999999999999999999995 899999999999999999999999999998876 3344555
Q ss_pred HHHhccccccchhhhccchhhh-HHHHHHHhhhcCC
Q 005106 325 VEIFSHANRQHRSIMVGLASFS-LYCLLSEVAMNLD 359 (714)
Q Consensus 325 ~~ll~~~~~~~r~~~v~~~~~~-~~~~l~~V~~d~~ 359 (714)
..++.|+++- +-..+|. +..+.+|+=+...
T Consensus 220 ~~ll~SpnLf-----vmq~EfdLyttlk~WmfLql~ 250 (488)
T KOG4682|consen 220 KQLLGSPNLF-----VMQVEFDLYTTLKKWMFLQLV 250 (488)
T ss_pred HHHhCCCCeE-----EEEeeehHHHHHHHHHHhhhc
Confidence 6677777763 4455666 4456678766554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-11 Score=134.45 Aligned_cols=296 Identities=14% Similarity=-0.018 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHH----
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQ---- 453 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~---- 453 (714)
.+++..+|..+...|+.++|...|.++.+..+ ....+..|.++...|++++|.+.+.++++.+|++..++.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 67888999999999999999999999887733 223455688899999999999999999999999886655
Q ss_pred --HHHhc-CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHH
Q 005106 454 --ERSLY-CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQ 529 (714)
Q Consensus 454 --~rg~~-~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e 529 (714)
..|.+ +..+.+...+......+|+...++..+|.++...|++++|+..++++++++|+ +..+..++.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 22322 22244444444555788888899999999999999999999999999999996 677788999999999999
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh-hHHH
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG-VLYF 608 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~-~~~~ 608 (714)
+|+..+++++.+.|..... ........+.+....+++++| +..+++++...|... ....
T Consensus 166 eA~~~l~~~l~~~~~~~~~--~~~~~~~la~~~~~~G~~~~A------------------~~~~~~~~~~~~~~~~~~~~ 225 (355)
T cd05804 166 EGIAFMESWRDTWDCSSML--RGHNWWHLALFYLERGDYEAA------------------LAIYDTHIAPSAESDPALDL 225 (355)
T ss_pred HHHHHHHhhhhccCCCcch--hHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHhccccCCChHHHH
Confidence 9999999999999864221 122333444455555666666 778888887776322 2222
Q ss_pred -HHHHHH---HHcCChHHHHHH--H-HHHHHhCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------
Q 005106 609 -RQSLLL---LRLNCPEAAMRS--L-QLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--------- 670 (714)
Q Consensus 609 -~~g~~L---~~lg~~eeAl~~--~-~~Al~l~P~--~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~--------- 670 (714)
+.+..+ ...|....+.++ . .......|. ....-..+++++...|+.++|....++.....-.
T Consensus 226 ~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 305 (355)
T cd05804 226 LDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR 305 (355)
T ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 222222 224434333333 1 111111122 2233347899999999999999999887764322
Q ss_pred -HHHHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 005106 671 -FEAFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 671 -~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (714)
...-.++|++..-..= -...+.+|.+|+
T Consensus 306 ~~~~~~l~A~~~~~~g~----~~~A~~~L~~al 334 (355)
T cd05804 306 DVGLPLAEALYAFAEGN----YATALELLGPVR 334 (355)
T ss_pred hhhHHHHHHHHHHHcCC----HHHHHHHHHHHH
Confidence 3366778877766652 234455555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=147.63 Aligned_cols=239 Identities=14% Similarity=0.088 Sum_probs=181.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg----~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~ 496 (714)
.|..++.+.+|..|+..|+.||...|+++..|.+|. .++++++|+-|..+.++++|.+...+...+.++..++...
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 455577778888888888888888888888887774 3466688888888888888888888888777777777766
Q ss_pred HHHHHHH---------------HHHhcCCC-HHH--HHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 497 AALAEIN---------------RILGFKLA-LEC--LEL-RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 497 eAl~~~~---------------kAL~l~P~-~~~--~~~-R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
+|-..++ +.+.-.-. |.+ +.. -+.++.-+|++++|+..--.++++||.+. .+..+
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~------~al~v 208 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA------EALYV 208 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh------HHHHh
Confidence 6664333 11111100 222 222 34578888888888888888888888883 34444
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH------------HHHHHHHHHHcCChHHHHH
Q 005106 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL------------YFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~------------~~~~g~~L~~lg~~eeAl~ 625 (714)
++.+.--....+.| ...++|+|.++|.+..+ |-.+|+=+.+.|++..|-+
T Consensus 209 rg~~~yy~~~~~ka------------------~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 209 RGLCLYYNDNADKA------------------INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred cccccccccchHHH------------------HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 44443333344444 66899999999988765 6688999999999999999
Q ss_pred HHHHHHHhCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 626 SLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 626 ~~~~Al~l~P~~~----ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
.|..||.++|++. --|+|++.+...+||.+||+..-++|++|+|++. |+..+|-+..|
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999999999864 4589999999999999999999999999999999 99999876543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=137.99 Aligned_cols=254 Identities=11% Similarity=-0.014 Sum_probs=187.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccchhh--H-hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--I-AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---- 458 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a--~-~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~---- 458 (714)
+...+....++|++++|..+|.+|.+.++... . ...+.++...|+++.|.+.++++++..|++.+++...+..
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 33346666899999999999999999865542 2 1347899999999999999999999999988877666432
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHH--------HHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYM--------YRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQ 529 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~--------~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e 529 (714)
++.++|++.+.+..+..+..+.... .+.........-+.....+++.-.-.| ++......+..+...|+.+
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHH
Confidence 4558899888887777766544332 211111222222222333333222234 3677777888999999999
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~ 609 (714)
+|....+++++..|+... .. +|-....-+...++..+++.++.+|+++++++.
T Consensus 281 ~A~~~L~~~l~~~~~~~l-------~~--------------------l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~ 333 (398)
T PRK10747 281 TAQQIILDGLKRQYDERL-------VL--------------------LIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWST 333 (398)
T ss_pred HHHHHHHHHHhcCCCHHH-------HH--------------------HHhhccCCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence 999999999996665421 11 111111112122588999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
.|.++.+.+++++|.+.++++++.+|++. .+..++.++-.+|+.++|...|++++.+
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999976 4668999999999999999999998875
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-12 Score=141.91 Aligned_cols=218 Identities=13% Similarity=-0.003 Sum_probs=181.0
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 005106 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLM 490 (714)
Q Consensus 415 ~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~ 490 (714)
+-+|+.+|.-|+..|++.+|.+.|.|+..++|..|.+|..-|.. +..+.|++.|.+|-++-|....|..++|.=|+
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 33577778888888888888888888888888888888877754 34489999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch-hhhhhHHHHHHHHHHHHhhhhh
Q 005106 491 TKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR-MFEGRVAASQLHMLVREHIDNW 568 (714)
Q Consensus 491 ~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~-~~~~~~~a~~~~~~l~~~~~~~ 568 (714)
.++.+.-|-..|..|+.+.|+ |-..+-.|.+....+.|.+|+..|+++++.-+..- .-.--.....++|.+...+..+
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 999999999999999999996 77778899999999999999999999994333220 0001122455566666666666
Q ss_pred hHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005106 569 TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 648 (714)
Q Consensus 569 ~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l 648 (714)
++| +..++++|.+.|.++.+|-..|.++..+|.++.|+..|.+||.++|+|.-+---+|.++
T Consensus 472 ~eA------------------I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 472 EEA------------------IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHH------------------HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 666 88999999999999999999999999999999999999999999999977766677655
Q ss_pred Hh
Q 005106 649 YD 650 (714)
Q Consensus 649 y~ 650 (714)
-+
T Consensus 534 e~ 535 (611)
T KOG1173|consen 534 ED 535 (611)
T ss_pred Hh
Confidence 44
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-12 Score=143.70 Aligned_cols=257 Identities=16% Similarity=0.021 Sum_probs=195.1
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~ 491 (714)
..+.+.|+..+.+|++++|.+.+..+|..+|....+|+.+|.+ |+-++++...-.|--|+|.+..-|..+|....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 3456677788889999999999999999999888888777654 444899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc----hhhhhhH-------------H
Q 005106 492 KQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY----RMFEGRV-------------A 553 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~----~~~~~~~-------------~ 553 (714)
+|.+++|+-.|+|||+.+|. ....+.|..+|.++|++..|..-|.+++.++|.- .+...+. +
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999995 7877889999999999999999999999999921 0000000 0
Q ss_pred H------------------HHHHHHHHHhhhhhhHHHHHHhhhhc----------------------cccc---------
Q 005106 554 A------------------SQLHMLVREHIDNWTIADCWLQLYDR----------------------WSSV--------- 584 (714)
Q Consensus 554 a------------------~~~~~~l~~~~~~~~~A~~~~~l~~~----------------------~~~~--------- 584 (714)
+ ......+.-...+|+.|...+.-.-. .-.+
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 1 11222223333445555432222111 0000
Q ss_pred -----------cccchHHHHHHHHHhC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHH
Q 005106 585 -----------DDIGSLSVIYQMLESD----APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWIL 648 (714)
Q Consensus 585 -----------~d~~al~~~~qaL~l~----P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~l 648 (714)
+.-..+.++..-+..+ -..+++++..+.+|...|++.+|++.+..++...+.+ +..++..|-|+
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1111112222222222 2457889999999999999999999999999998864 56788899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 649 YDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 649 y~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
..+|++++|+..|++++.++|+.-
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCch
Confidence 999999999999999999999876
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-13 Score=138.29 Aligned_cols=226 Identities=12% Similarity=0.043 Sum_probs=193.7
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 005106 420 GLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ 493 (714)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~p~------~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~ 493 (714)
-+|++|+.+|-+.+|.+.+.++++..|- +..+|+.. .+.+.|+..|...++--|.+.-.....|-++..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ri---dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI---DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHh---ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 4899999999999999999999998763 34444444 34489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 005106 494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 572 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~ 572 (714)
++++|+..|++++.++|. .++.--.+.-|..-++.|-|++.|++++++.-.+.. .....++.=...+|++.+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe------Lf~NigLCC~yaqQ~D~~- 377 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE------LFCNIGLCCLYAQQIDLV- 377 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH------HHhhHHHHHHhhcchhhh-
Confidence 999999999999999995 565444555678889999999999999999888754 334444444444555555
Q ss_pred HHHhhhhccccccccchHHHHHHHHHhCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005106 573 CWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (714)
Q Consensus 573 ~~~~l~~~~~~~~d~~al~~~~qaL~l~P---~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 649 (714)
|.+|.||+...- ..++.|+|+|.+..-.|++--|.++++.|+-.+|+++++++|+|.+--
T Consensus 378 -----------------L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 378 -----------------LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA 440 (478)
T ss_pred -----------------HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh
Confidence 889999998865 457889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCHH
Q 005106 650 DTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 650 ~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
..|+.++|-+.+.-|-+..|.-.
T Consensus 441 r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred hcCchHHHHHHHHHhhhhCcccc
Confidence 99999999999999999999743
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=152.40 Aligned_cols=159 Identities=9% Similarity=-0.055 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
.+++.-...-.+-.|+++.++.++|.+..++|+++||...++++++++|+ ..+..+++.++.+++++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 34444334445567888999999999999999999999999999999997 67778888888888888888876666666
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
.+|++ +.+++.+|.+|.++|++
T Consensus 149 ~~p~~----------------------------------------------------------~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 149 GGSSS----------------------------------------------------------AREILLEAKSWDEIGQS 170 (694)
T ss_pred cCCCC----------------------------------------------------------HHHHHHHHHHHHHhcch
Confidence 66665 56678899999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHHHHHHHH
Q 005106 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM-KRSFEAFFLKA 678 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i-~~~~~a~~~~~ 678 (714)
++|.+.|+++++-+|++++++.++|.+|..+|+.++|...|++|++. .|..-+|.++.
T Consensus 171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 171 EQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 44444665544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.8e-12 Score=125.85 Aligned_cols=203 Identities=18% Similarity=0.071 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a--~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
..+..+||.-|++.|++..|..-+++||+.+|.+. |..++.+|..+|+.+.|
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A-------------------------- 88 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLA-------------------------- 88 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhH--------------------------
Confidence 45567788888888888888888888888876554 45555566666665555
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
-+.|++|+.++|++....+|-|.-+..+|++++|..-|++|++ +|. ++.+.|.|+|-.++|+.+.|..+|+
T Consensus 89 ----~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 89 ----DESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred ----HHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 4456778888888888888888888889999999999999987 353 5678888888888999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
++++++|++.... .......-..+++..| -..+++-...-+-.++..--.-.+-.+
T Consensus 164 raL~~dp~~~~~~------l~~a~~~~~~~~y~~A------------------r~~~~~~~~~~~~~A~sL~L~iriak~ 219 (250)
T COG3063 164 RALELDPQFPPAL------LELARLHYKAGDYAPA------------------RLYLERYQQRGGAQAESLLLGIRIAKR 219 (250)
T ss_pred HHHHhCcCCChHH------HHHHHHHHhcccchHH------------------HHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 9999999884311 1111111112222223 333333333333333333333333445
Q ss_pred cCChHHHHHHHHHHHHhCCCChhH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
+|+...|-+.-.+.-++.|...+-
T Consensus 220 ~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 220 LGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred hccHHHHHHHHHHHHHhCCCcHHH
Confidence 788887777777777777876653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-12 Score=128.11 Aligned_cols=121 Identities=11% Similarity=0.032 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHhcCC--HHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALED--YQAALCDVQA 537 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~-~~~lgd--~e~Al~d~~~ 537 (714)
++++..|.++++.+|+++.+|..+|.+++.+|++++|+..|++|++++|+ ++.+...|.+ +...|+ +++|++.+
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l-- 133 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI-- 133 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH--
Confidence 77888888888888888888888888888888888888888888888885 7777777764 355564 24444444
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
+++++.+|+++.+++++|..+.++
T Consensus 134 --------------------------------------------------------~~al~~dP~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 134 --------------------------------------------------------DKALALDANEVTALMLLASDAFMQ 157 (198)
T ss_pred --------------------------------------------------------HHHHHhCCCChhHHHHHHHHHHHc
Confidence 444444444456777788888888
Q ss_pred CChHHHHHHHHHHHHhCCCChhH
Q 005106 618 NCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea 640 (714)
|++++|+..++++++++|.+.+.
T Consensus 158 g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 158 ADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred CCHHHHHHHHHHHHhhCCCCccH
Confidence 88888888888888888876655
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-12 Score=141.25 Aligned_cols=231 Identities=14% Similarity=0.089 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc-------cchh--hHh-hHHHHHHHhCCHHHHHHHHHHHHhc--------
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-------GHIY--SIA-GLARLGYIKGHKLWAYEKLNSVISS-------- 444 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-------~~~~--a~~-~lg~~~~~~G~~~~A~~~~~~aI~~-------- 444 (714)
..+.++++..+..+|+|+.|+..|+.|+++ +|.. .+. .+|.+|..+|++.+|+..|++|+.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455667999999999999999999999988 3432 233 4899999999999999999999986
Q ss_pred CC-------CcHHHHHHHHhcCChhHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 445 VT-------PLGWMYQERSLYCEGDKRWEDLDKATAL--------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK 509 (714)
Q Consensus 445 ~p-------~~~~ay~~rg~~~~~~eAl~d~~kAi~L--------dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~ 509 (714)
+| |++.+|.++|++ ++|...+++|+++ .|..+..+.+.|.++...+++++|+..+++++++-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf---~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKF---AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CHHHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 34 345555555444 8888888888765 45567788889999999999999999999998862
Q ss_pred ---C-----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 510 ---L-----A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 510 ---P-----~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
| . +....+.|.+|..+|+|++|...|.+|++..-..-.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~--------------------------------- 402 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG--------------------------------- 402 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc---------------------------------
Confidence 2 2 233456788999999999999999999987533200
Q ss_pred cccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHhcCC
Q 005106 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSH 653 (714)
Q Consensus 581 ~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~ly~~G~ 653 (714)
..++......+++|....+++++++|-..|.+++.+. |+-...+-|+|-+|-.+|+
T Consensus 403 -----------------~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 403 -----------------KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred -----------------CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 0112233445567777777788887777777777663 4455677788888888888
Q ss_pred HHHHHHHHHHHHh
Q 005106 654 CEEGLRKAEESIQ 666 (714)
Q Consensus 654 ~eeAl~~ye~Ai~ 666 (714)
+|+|+...++++.
T Consensus 466 ~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 466 YEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887774
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-12 Score=129.96 Aligned_cols=163 Identities=18% Similarity=0.082 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HH
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW---MY 452 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-----~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~---ay 452 (714)
+...+++.+|..+...|++++|+..|+++++..|. .++..+|.++...|++++|+..|+++++.+|+.+. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34567889999999999999999999999998553 46788999999999999999999999999997654 56
Q ss_pred HHHHhc------------CChhHHHHHHHHHHhcCCCChHHH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 005106 453 QERSLY------------CEGDKRWEDLDKATALDPTLSYPY-----------------MYRASSLMTKQNVEAALAEIN 503 (714)
Q Consensus 453 ~~rg~~------------~~~~eAl~d~~kAi~LdP~~~~ay-----------------~~rg~~l~~l~r~~eAl~~~~ 503 (714)
+.+|.. +..++|+..|+++++.+|++..++ .++|.++...|++++|+..|+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 666542 234889999999999999997653 467899999999999999999
Q ss_pred HHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005106 504 RILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (714)
Q Consensus 504 kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P 543 (714)
+++...|+ ++++..+|.++..+|++++|+..++....--|
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999774 46788899999999999999998777665544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-10 Score=132.48 Aligned_cols=312 Identities=16% Similarity=0.142 Sum_probs=212.4
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcc--chh--hHhhHH-HHHHHhCCHHHHHHHHHHHHhcCC------------Cc
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIY--SIAGLA-RLGYIKGHKLWAYEKLNSVISSVT------------PL 448 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~--a~~~lg-~~~~~~G~~~~A~~~~~~aI~~~p------------~~ 448 (714)
++.++..+...|.-..|+...++.+.+. |.+ .+.-.+ .+.-..|...+++.+..++|...- -.
T Consensus 360 w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~l 439 (799)
T KOG4162|consen 360 WYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFL 439 (799)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHH
Confidence 3555556666666666666665555543 322 122122 355668888899999999998421 14
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHH
Q 005106 449 GWMYQERSLY--------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELR 518 (714)
Q Consensus 449 ~~ay~~rg~~--------~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~--~~~~~~R 518 (714)
|-+|..+..- -...+++..+++|++.+|+|+.+.++++.=|..+++.+.|+...+++|++++. +.+|+.+
T Consensus 440 Gi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLL 519 (799)
T KOG4162|consen 440 GIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLL 519 (799)
T ss_pred HHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 4444444321 01278889999999999999999999999999999999999999999999883 8899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHH-------HHHHHHHHHHhhhhhh---------------------
Q 005106 519 FCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVA-------ASQLHMLVREHIDNWT--------------------- 569 (714)
Q Consensus 519 ~~~~~~lgd~e~Al~d~~~al~L~P~~~~-~~~~~~-------a~~~~~~l~~~~~~~~--------------------- 569 (714)
+.++...+++.+|+.-.+.+++--|+|.. -.|+.. ....++.+.+.+.-|+
T Consensus 520 ALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l 599 (799)
T KOG4162|consen 520 ALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGL 599 (799)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccc
Confidence 99999999999999999999998888421 111111 1111122222222222
Q ss_pred --------------------------H-----------------------HHHHHhhhhccccccc-cchHHHHHHHHHh
Q 005106 570 --------------------------I-----------------------ADCWLQLYDRWSSVDD-IGSLSVIYQMLES 599 (714)
Q Consensus 570 --------------------------~-----------------------A~~~~~l~~~~~~~~d-~~al~~~~qaL~l 599 (714)
. -..|....+.|...+. .++..++..|=.+
T Consensus 600 ~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 600 HLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI 679 (799)
T ss_pred ccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 0 0122233333333322 2356677777777
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCHH-HHHH
Q 005106 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR--KAEESIQMKRSFE-AFFL 676 (714)
Q Consensus 600 ~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~--~ye~Ai~i~~~~~-a~~~ 676 (714)
+|-.+..|+.+|.++...|..+||+..|..|+.++|++......+|.++...|+-.-|.. ....|++++|+.. |||.
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 888888888888888888888888888888888888888888888888888887666666 7777888888777 8887
Q ss_pred HHHH---hhccCCCCCchhhHHHH
Q 005106 677 KAYA---LADSSQDSSCSSTVVSL 697 (714)
Q Consensus 677 ~~~~---~~~~~~~~~~~~~~~~~ 697 (714)
-|-+ ++|+.--.+|-.+-+||
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhh
Confidence 7764 45666555666666554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=129.71 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 005106 492 KQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~ 570 (714)
.++.++++..++++++.+|+ ++.|..+|.+|..+|++++|+..|+++++++|++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------------------------- 106 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------------------------- 106 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------
Confidence 77889999999999999995 8888899999999999999988887777777776
Q ss_pred HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHH-HHcCC--hHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005106 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL-LRLNC--PEAAMRSLQLARQHAASDHERLVYEGWI 647 (714)
Q Consensus 571 A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L-~~lg~--~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 647 (714)
+.++++.|.++ ...|+ .++|...+++|++++|++.+++.++|.+
T Consensus 107 ---------------------------------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~ 153 (198)
T PRK10370 107 ---------------------------------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASD 153 (198)
T ss_pred ---------------------------------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 45667788875 67777 5999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 648 LYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 648 ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++.+|++++|++.|++++++.|...
T Consensus 154 ~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 154 AFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999988754
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=133.26 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~ 560 (714)
..+=|+=+++-++|++|+.-|++||+++|. +-.|.+|+.+|.++|.++.|+.|+..||.+||.|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--------------- 148 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--------------- 148 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH---------------
Confidence 345555666666666666666666666663 4444556666666666666666666665555555
Q ss_pred HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 561 l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
..+|-++|.++..+|++++|++.|++||+++|+|...
T Consensus 149 -------------------------------------------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 149 -------------------------------------------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred -------------------------------------------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHH
Confidence 2344556666666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHhc-C-CCHH
Q 005106 641 LVYEGWILYDTSHCE---EGLRKAEESIQM-K-RSFE 672 (714)
Q Consensus 641 ~~~~G~~ly~~G~~e---eAl~~ye~Ai~i-~-~~~~ 672 (714)
--+++|+-..++.-. .+....+-+-.+ . |++-
T Consensus 186 K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 186 KSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 666666655555444 444444433333 2 5555
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=134.72 Aligned_cols=88 Identities=23% Similarity=0.252 Sum_probs=83.0
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
++|++|+..|++||+|+|+++-.|.|||.+|.+||.++.|+.+..+||.+||. ..+|-.+|.+|..+|++++|++.|++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 34499999999999999999999999999999999999999999999999998 67777789999999999999999999
Q ss_pred HHhhCCCch
Q 005106 538 ILTLSPDYR 546 (714)
Q Consensus 538 al~L~P~~~ 546 (714)
||+|+|++.
T Consensus 175 aLeldP~Ne 183 (304)
T KOG0553|consen 175 ALELDPDNE 183 (304)
T ss_pred hhccCCCcH
Confidence 999999995
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-11 Score=135.89 Aligned_cols=281 Identities=15% Similarity=0.057 Sum_probs=215.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHH
Q 005106 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNS 440 (714)
Q Consensus 364 ~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~A~~~~~~ 440 (714)
..++.+++++.+.+. +..+.|.++.-+..+++++.|.+...++++++ +.-+|+.++.+...++++.+|+...+.
T Consensus 462 kslqale~av~~d~~---dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPT---DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 444556665554443 35778999999999999999999999999993 566788999999999999999999999
Q ss_pred HHhcCCC-----cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHH---------HHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 441 VISSVTP-----LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPY---------MYRASSLMTKQNVEAALAEINRIL 506 (714)
Q Consensus 441 aI~~~p~-----~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay---------~~rg~~l~~l~r~~eAl~~~~kAL 506 (714)
+++-.+. .+.++.+.- +++.++|+.-...-+.+--+-+.+- ..-+...+.+.+..+|+..++++.
T Consensus 539 al~E~~~N~~l~~~~~~i~~~-~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELT-FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhh-cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 9987765 344444432 4455666665555544433222111 112223333344555555555554
Q ss_pred hc-------------------CCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHH
Q 005106 507 GF-------------------KLAL--------ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (714)
Q Consensus 507 ~l-------------------~P~~--------~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~ 559 (714)
.+ .|.+ ..|...+.++...+.-++|..+...|-.++|-- ...+++.|
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~------~~~~~~~G 691 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS------ASVYYLRG 691 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh------HHHHHHhh
Confidence 33 1211 124456678999999999999999999999876 45778888
Q ss_pred HHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH--HHHHHHHhCCCC
Q 005106 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR--SLQLARQHAASD 637 (714)
Q Consensus 560 ~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~--~~~~Al~l~P~~ 637 (714)
.+-...+++.+| ...|.-|+.+||+++..-..+|.+|.+.|++.=|.. .++.|++++|.+
T Consensus 692 ~~~~~~~~~~EA------------------~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n 753 (799)
T KOG4162|consen 692 LLLEVKGQLEEA------------------KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN 753 (799)
T ss_pred HHHHHHHhhHHH------------------HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC
Confidence 888888889888 778999999999999999999999999999988888 999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++|++++|.++-.+|+.++|...|.-|+.+.+|..
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999999999998865
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.38 E-value=7e-12 Score=117.21 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=57.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
++.+|+++|.++.++|++++|...++++++++|++++.++++|++++..|++++|++.++++++++|+...+
T Consensus 50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 345667777788888888888888888888888888888888888888888888888888888888877653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-13 Score=151.57 Aligned_cols=141 Identities=18% Similarity=0.293 Sum_probs=119.8
Q ss_pred CCCCCccEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhcc-CCCCC----C
Q 005106 177 GDQVLRNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNG----V 250 (714)
Q Consensus 177 ~~~~~~DV~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Yt-g~l~~----i 250 (714)
+.+...|+.+.. +|+.++||+++|++++.||..||..-+.|+..-.+... .+..+.|+.+|+|+|+ ++..- -
T Consensus 706 dh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~--p~~~e~m~ivLdylYs~d~~~~~k~~~ 783 (1267)
T KOG0783|consen 706 DHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS--PLTVEHMSIVLDYLYSDDKVELFKDLK 783 (1267)
T ss_pred CCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC--cchHHHHHHHHHHHHccchHHHHhccc
Confidence 445555666655 88889999999999999999999999999988666655 4889999999999995 43320 1
Q ss_pred CHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCC
Q 005106 251 TPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN 320 (714)
Q Consensus 251 ~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~ 320 (714)
..+-+.++|..||.|-+.+|+..|+.-|...++ ..+|-.+++||..|+|.+|...|++|+..|+...|.
T Consensus 784 ~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 784 ESDFMFEILSIADQLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHH
Confidence 345688999999999999999999999999994 899999999999999999999999999998866443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-11 Score=140.39 Aligned_cols=145 Identities=13% Similarity=0.029 Sum_probs=121.0
Q ss_pred HhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH
Q 005106 442 ISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE 516 (714)
Q Consensus 442 I~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~ 516 (714)
...||.+..++.+++. .+++++|...++++++++|++..++.++|.++.++++++||+..+++++..+|+ +..++
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 3445655555555543 245588888899999999999999999999999999999999999999999996 78888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 005106 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (714)
Q Consensus 517 ~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qa 596 (714)
.+|.++.++|++++|+..|+++++.+|++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~--------------------------------------------------- 187 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEF--------------------------------------------------- 187 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCc---------------------------------------------------
Confidence 99999999999999999888888866664
Q ss_pred HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005106 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 644 (714)
Q Consensus 597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (714)
+.++.++|.+|..+|+.++|...|++|++...+-.-.+.++
T Consensus 188 -------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 188 -------ENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 45678889999999999999999999999998877664443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-09 Score=124.55 Aligned_cols=278 Identities=8% Similarity=-0.054 Sum_probs=176.8
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHH----HhcC
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV-TPLGWMYQER----SLYC 459 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~-p~~~~ay~~r----g~~~ 459 (714)
.+..+-..|...|++++|.+.|++..+ ....+|..+...|.+.|+.++|++.|++..+.. .++...|... +..+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 334556667777777777777776432 334456667777777777777777777765532 1122223222 2234
Q ss_pred ChhHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALD-PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~Ld-P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
..++|...+..+++.. +.+...|+.+...|.+.|++++|...|++.. +|+...|+.....|...|+.++|+..|++.
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4477777777777665 5566677777777777777777777777765 466566666666777777777777777776
Q ss_pred Hh--hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH----------HHHhhhhccccccccc-hHHHHHHHHHhCCCChh
Q 005106 539 LT--LSPDYRMFEGRVAASQLHMLVREHIDNWTIAD----------CWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGV 605 (714)
Q Consensus 539 l~--L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~----------~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~ 605 (714)
.+ +.|+...|..-..+....+.++...+.++... .|..+.+.+.+.++.+ |...++++ ...| ++.
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~ 495 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVN 495 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHH
Confidence 65 45665544433333333333333333222221 1122222222233333 45555554 1223 345
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
.|..+-.+....|+.+.|...+++.+++.|++...|..++.++...|++++|...+++.-+.
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 68788888888999999999999999999999999999999999999999999988876654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-11 Score=134.64 Aligned_cols=215 Identities=15% Similarity=0.041 Sum_probs=157.3
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE 466 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~ 466 (714)
-.++..+...|-..+|+..|++ ...+.+...+|...|+..+|.....+-++ .|+.+..|.-+|.. -.--.
T Consensus 402 ~~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv---~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV---LHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh---ccChH
Confidence 3678888889999999999988 34556677789999999999888888888 89999999999876 33344
Q ss_pred HHHHHHhcC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 467 DLDKATALD-PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 467 d~~kAi~Ld-P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
.|+||+++- -.++.|.+..|......++|++|..++++.++++|- .+.|+.+|++..++++++.|..+|.+.++++|+
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 567777663 335567788888888899999999999999999994 899999999999999999999999999999998
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (714)
+..+.++.++.+.+ ..+-.+ |-..+..|+.-+-.+...|-|--.+..+.|.+++|+
T Consensus 552 ~~eaWnNls~ayi~------~~~k~r------------------a~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIR------LKKKKR------------------AFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred chhhhhhhhHHHHH------HhhhHH------------------HHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 83322222222211 111111 233455555555555556666666666666666666
Q ss_pred HHHHHHHHhCC
Q 005106 625 RSLQLARQHAA 635 (714)
Q Consensus 625 ~~~~~Al~l~P 635 (714)
+.|.+-+.+.-
T Consensus 608 ~A~~rll~~~~ 618 (777)
T KOG1128|consen 608 KAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHHhhh
Confidence 66666555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=138.99 Aligned_cols=248 Identities=16% Similarity=0.090 Sum_probs=189.7
Q ss_pred HhccchHHHHHHHHHHHhccc--h-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCh----h
Q 005106 394 LLRKEYDEAEHLFEAAVNAGH--I-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG----D 462 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~~~--~-----~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~----~ 462 (714)
+....+.++--+|-++++.+- + ..+...+..-+.+.+...|+..+-+++.++++.|.+|--+|.|++- .
T Consensus 430 ~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~ 509 (1238)
T KOG1127|consen 430 FNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMK 509 (1238)
T ss_pred cCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 334556666666666655521 1 1111222223445668888888889999999999999888876432 6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 463 eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
.|..+|++|.+|||+++.++...+..|.+....++|.+..-++=+..|. -..|..||..|.+-++.-+|+.+|+.|+
T Consensus 510 RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL 589 (1238)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh
Confidence 6778899999999999999999999999999999999888777777774 2345568888999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (714)
+.+|++ ..||..+++...+-+++. |+.+|++|..++|.+.-..|-.+.....+|
T Consensus 590 R~dPkD-------------------------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 590 RTDPKD-------------------------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred cCCchh-------------------------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 999987 567778888777778777 788999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHH-------HhcCCHHHHHHHHHHHHh
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWIL-------YDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l-------y~~G~~eeAl~~ye~Ai~ 666 (714)
.+++|+..+...+.-..+..-++..+|.++ +-+|=.-+|...++++|.
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999998888888777666666666554 445667777777777765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=113.32 Aligned_cols=116 Identities=22% Similarity=0.213 Sum_probs=92.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 467 d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.|.++++++|++..+...+|..+...|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 577888888888888888888888888888888888888888885 7777778888888888887777666666655554
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 005106 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (714)
+..++++|.++..+|++++|+.
T Consensus 85 ----------------------------------------------------------~~~~~~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 85 ----------------------------------------------------------PRPYFHAAECLLALGEPESALK 106 (135)
T ss_pred ----------------------------------------------------------hHHHHHHHHHHHHcCCHHHHHH
Confidence 4567778888888888888888
Q ss_pred HHHHHHHhCCCChhH
Q 005106 626 SLQLARQHAASDHER 640 (714)
Q Consensus 626 ~~~~Al~l~P~~~ea 640 (714)
.++++++++|++...
T Consensus 107 ~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 107 ALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHhccccchH
Confidence 888888888887663
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-08 Score=122.19 Aligned_cols=284 Identities=13% Similarity=0.051 Sum_probs=145.3
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH----Hh
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPLGWMYQER----SL 457 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~--~p~~~~ay~~r----g~ 457 (714)
..+-..+...|++++|.+.|++..+.+ ....|..+...|.+.|++++|++.|.+..+. .|+ ...|... +.
T Consensus 476 nsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k 554 (1060)
T PLN03218 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQ 554 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Confidence 333344444455555555555544432 1223333444455555555555555444332 121 1122111 12
Q ss_pred cCChhHHHHHHHHHHh----cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhcCCHHHH
Q 005106 458 YCEGDKRWEDLDKATA----LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--LALECLELRFCFFLALEDYQAA 531 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~----LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~--P~~~~~~~R~~~~~~lgd~e~A 531 (714)
.+..++|...|++..+ +.|+ ...|..+-.+|.+.|++++|+..|++..+.+ |+...|......|.+.|++++|
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 2333555555544433 2333 2344444445555555555555555554432 2333344444444455555555
Q ss_pred HHHHHHHHhh--CCCchhhhhhHHHHHHHHHHHHhhhhhhH---------HHHHHhhhhccccccccc-hHHHHHHHHHh
Q 005106 532 LCDVQAILTL--SPDYRMFEGRVAASQLHMLVREHIDNWTI---------ADCWLQLYDRWSSVDDIG-SLSVIYQMLES 599 (714)
Q Consensus 532 l~d~~~al~L--~P~~~~~~~~~~a~~~~~~l~~~~~~~~~---------A~~~~~l~~~~~~~~d~~-al~~~~qaL~l 599 (714)
+.-|+...+. .|+...|..-..+....+.++...+.+++ ...|..+.......++.+ |...|+++.+.
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 5555544443 34422221111111111111111111111 112233333333344444 57788887664
Q ss_pred --CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHH
Q 005106 600 --DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSFEA 673 (714)
Q Consensus 600 --~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~--i~~~~~a 673 (714)
.| +...|+.+-..+.+.|++++|++.+++..+ +.|+ ...+..+-..+...|++++|+..+++.++ +.|+...
T Consensus 714 g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 714 KLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 44 567899999999999999999999998765 4565 55777787889999999999999999987 5777664
Q ss_pred H
Q 005106 674 F 674 (714)
Q Consensus 674 ~ 674 (714)
|
T Consensus 792 y 792 (1060)
T PLN03218 792 C 792 (1060)
T ss_pred H
Confidence 4
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=135.02 Aligned_cols=297 Identities=13% Similarity=0.031 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCC--cHHHHHHHHh
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTP--LGWMYQERSL 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a--~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~--~~~ay~~rg~ 457 (714)
-+.++.-+|..|..--+...|.++|++|.++++.++ ..+.+..|....+.+.|.....++-+..|. --+.|..||-
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 367888899999998899999999999999977665 455677899999999998886666666664 2355566886
Q ss_pred cC----ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHH
Q 005106 458 YC----EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAAL 532 (714)
Q Consensus 458 ~~----~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-~~~~~R~~~~~~lgd~e~Al 532 (714)
|. ..-+|+.+|.-|++.+|.+...|..+|.+|.+-|++.-|+..|+||..++|.. ..-+.-+.....+|.|.+|+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 53 33899999999999999999999999999999999999999999999999964 33455677899999999999
Q ss_pred HHHHHHHhhCCCchhh-------hhhHHH-----------------------HHHHHHHHHhhhhhhHH-----------
Q 005106 533 CDVQAILTLSPDYRMF-------EGRVAA-----------------------SQLHMLVREHIDNWTIA----------- 571 (714)
Q Consensus 533 ~d~~~al~L~P~~~~~-------~~~~~a-----------------------~~~~~~l~~~~~~~~~A----------- 571 (714)
.-+..++.--..+..+ +.|.+. ..+...+.....+|.-|
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 9998887755444221 112220 01111111111122111
Q ss_pred ---------------------------------------------HHHHhhhhcccc--------cccc-chHHHHHHHH
Q 005106 572 ---------------------------------------------DCWLQLYDRWSS--------VDDI-GSLSVIYQML 597 (714)
Q Consensus 572 ---------------------------------------------~~~~~l~~~~~~--------~~d~-~al~~~~qaL 597 (714)
-.|-+++-..-+ .++. .|+-++-+++
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 011111111000 0122 1445666667
Q ss_pred HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHH
Q 005106 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFL 676 (714)
Q Consensus 598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~ 676 (714)
.++.++-.+|+.+|.+ -.-|.+.-|.-+|-+++.++|.++-++.|+|.+.....+++-|-+.+.++++|+|++- +|.-
T Consensus 811 ~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG 889 (1238)
T KOG1127|consen 811 SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG 889 (1238)
T ss_pred HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence 7777777777777666 4456666666677777777777777777777777777777777777777777777665 5554
Q ss_pred HHH
Q 005106 677 KAY 679 (714)
Q Consensus 677 ~~~ 679 (714)
+|+
T Consensus 890 ~Al 892 (1238)
T KOG1127|consen 890 EAL 892 (1238)
T ss_pred HHH
Confidence 444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-09 Score=117.75 Aligned_cols=265 Identities=16% Similarity=0.048 Sum_probs=218.2
Q ss_pred ccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH----HhcCChhHHHHHHH
Q 005106 396 RKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER----SLYCEGDKRWEDLD 469 (714)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~r----g~~~~~~eAl~d~~ 469 (714)
-|..++=...+++|+..- ....|...+.-+...|+.-.|...+..|++.+|++-..|..- +....++.|...|.
T Consensus 563 hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 477778888889998873 333455556678888999999999999999999988877665 34456699999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 005106 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (714)
Q Consensus 470 kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~ 548 (714)
||-...|+ ...|+.-+....-++..+||+..++++|+.-|+ +..|...|.++..+++.+.|...|..-++..|+-+
T Consensus 643 kar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-- 719 (913)
T KOG0495|consen 643 KARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-- 719 (913)
T ss_pred HHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc--
Confidence 99998887 457888888999999999999999999999998 45566689999999999999999999999999974
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 628 (714)
....++..|++...+...| -++++++.-.+|.++.+|.-.=-.-.+.|+.+.|.....
T Consensus 720 ----pLWllLakleEk~~~~~rA------------------R~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 720 ----PLWLLLAKLEEKDGQLVRA------------------RSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred ----hHHHHHHHHHHHhcchhhH------------------HHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566666666666666666 678899999999999999888888888999999988888
Q ss_pred HHHHhCCC------------------------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH---HHH
Q 005106 629 LARQHAAS------------------------------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE---AFF 675 (714)
Q Consensus 629 ~Al~l~P~------------------------------~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~---a~~ 675 (714)
+||+--|+ |+..+...|-.++...++++|...|+||..++|++. |||
T Consensus 778 kALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 778 KALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred HHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 88888874 555666777888888999999999999999999987 999
Q ss_pred HHHHHhhccC
Q 005106 676 LKAYALADSS 685 (714)
Q Consensus 676 ~~~~~~~~~~ 685 (714)
.|=++..-+-
T Consensus 858 ykfel~hG~e 867 (913)
T KOG0495|consen 858 YKFELRHGTE 867 (913)
T ss_pred HHHHHHhCCH
Confidence 9988876543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-10 Score=130.09 Aligned_cols=266 Identities=16% Similarity=0.057 Sum_probs=191.0
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--------CC-------CcHH
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS--------VT-------PLGW 450 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~--------~p-------~~~~ 450 (714)
.|..-..+...+.|++|+.-++++....-.+++..++.... +. +..+..+.+.... .| .++.
T Consensus 131 ~hl~~~~~~~~~~l~ea~~~~e~~~~~~~~d~la~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~ 207 (508)
T KOG1840|consen 131 LHLLAAIQALLLQLDEAEQGQEQAAVTPVKDSLADLGGEKQ--EE-DSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAE 207 (508)
T ss_pred HHHHHHHHHHHHHhhhhhcccccccccchhHHHHhhccccc--cc-cccchhhHHHHHHHHHhcccCCchHHHHHHHHHH
Confidence 45566666677788888877776543321222222221111 11 0111111111111 22 3777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-HH
Q 005106 451 MYQERSLYCEGDKRWEDLDKATAL--------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGF--------KLA-LE 513 (714)
Q Consensus 451 ay~~rg~~~~~~eAl~d~~kAi~L--------dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l--------~P~-~~ 513 (714)
+|..+|++ ++|+.-+.+|++. .|..+...++.|.+|+.++++.+|+..|++|+.+ +|. ..
T Consensus 208 ~y~~~g~~---e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 208 MYAVQGRL---EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHhccH---HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 78888777 9999999999999 8888888899999999999999999999999987 233 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc-hhhhhhHH-HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 005106 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDY-RMFEGRVA-ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (714)
Q Consensus 514 ~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~-~~~~~~~~-a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 591 (714)
.+.+++.+|...|++++|...+++|+++--.- ....++++ .......+......+++|.- ++.+ ++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~---l~q~--------al~ 353 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK---LLQK--------ALK 353 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH---HHHH--------HHH
Confidence 46778999999999999999999999975441 11233333 46667777778888888842 2221 344
Q ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 592 VIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--------ASDHERLVYEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 592 ~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~--------P~~~ea~~~~G~~ly~~G~~eeAl~~ye 662 (714)
.+.++..-+ |.-+..+.|+|.++..+|+++||.+.|++|+... +..+-.++++|..+++.+++++|-+.|+
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 444444433 3667789999999999999999999999999886 4457789999999999999999999999
Q ss_pred HHHhcC
Q 005106 663 ESIQMK 668 (714)
Q Consensus 663 ~Ai~i~ 668 (714)
+++.|.
T Consensus 434 ~~~~i~ 439 (508)
T KOG1840|consen 434 EAKDIM 439 (508)
T ss_pred HHHHHH
Confidence 999984
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-10 Score=119.87 Aligned_cols=275 Identities=13% Similarity=0.039 Sum_probs=184.3
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhC--CHHHHHHHHHHHHhcCCCcHHHHHHHHhc---
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKG--HKLWAYEKLNSVISSVTPLGWMYQERSLY--- 458 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~a~~~lg~~~~~~G--~~~~A~~~~~~aI~~~p~~~~ay~~rg~~--- 458 (714)
.+.+..++..|+++.|++.+.--=+.+. ..+..++..+++.+| ++..|-.+-..|+.++.-++.+..+.|+.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 3556677888999999887654322221 223346666778876 45566677777888888888899888863
Q ss_pred -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 459 -~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
|++++|.+-|..|+.-|...+++.+|.|..+-.+|+.++|+..|-|.-.+=. +.+.++..+.+|.-+.+..+||+.+.
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 6779999999999999999999999999999999999999999988766544 47888888899999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH-HHHHhhhhccc--------------cccccc-hHHHHHHHHHhC
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA-DCWLQLYDRWS--------------SVDDIG-SLSVIYQMLESD 600 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A-~~~~~l~~~~~--------------~~~d~~-al~~~~qaL~l~ 600 (714)
++..+=|+++. ....++.+...-.+-.+| .|+-.-|-... .....+ |+..+++|--+.
T Consensus 583 q~~slip~dp~------ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 583 QANSLIPNDPA------ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HhcccCCCCHH------HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99999999854 333333333322222222 11100000000 001111 355666666667
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC--CHHHHHHHHHHHHhc
Q 005106 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS--HCEEGLRKAEESIQM 667 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G--~~eeAl~~ye~Ai~i 667 (714)
|+.+.-....+.|+.+.|.++.|...|+..-+.-|.+.+-+-.+--+--++| ++.|=-.+.+++-+|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~klek~eki 725 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADKLEKAEKI 725 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 7666666666677777777777777777777777776666666655555554 233334444444444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-08 Score=125.86 Aligned_cols=314 Identities=11% Similarity=0.000 Sum_probs=214.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHH---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQER--- 455 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p-~~~~ay~~r--- 455 (714)
...|..+=..+...|++++|...|++..+.+ ....+..+-.+|.+.|+.++|.+.|++..+... ++...|...
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3455555566678899999999999988774 234566677789999999999999998887542 233444332
Q ss_pred -HhcCChhHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHhcCCH
Q 005106 456 -SLYCEGDKRWEDLDKATA--LDPTLSYPYMYRASSLMTKQNVEAALAEINRILG----FKLALECLELRFCFFLALEDY 528 (714)
Q Consensus 456 -g~~~~~~eAl~d~~kAi~--LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~----l~P~~~~~~~R~~~~~~lgd~ 528 (714)
.+.++.++|+..|++..+ +.|+ ...|+.+..++.+.|++++|...|++..+ +.|+...+......|.+.|++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 234556999999988754 4565 67899999999999999999999999865 577777777777789999999
Q ss_pred HHHHHHHHHHHhhC--CCchhhhhhHHHHHHHHHHHHhhhhhhHH---------HHHHhhhhccccccccc-hHHHHHHH
Q 005106 529 QAALCDVQAILTLS--PDYRMFEGRVAASQLHMLVREHIDNWTIA---------DCWLQLYDRWSSVDDIG-SLSVIYQM 596 (714)
Q Consensus 529 e~Al~d~~~al~L~--P~~~~~~~~~~a~~~~~~l~~~~~~~~~A---------~~~~~l~~~~~~~~d~~-al~~~~qa 596 (714)
++|++.|+...+.+ |+-..|..-..++...+.++.+.+-+++. ..|..+.+.....++.+ |...+++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999998876 33333332233333333333333332222 23445555555556655 67788888
Q ss_pred HHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCH
Q 005106 597 LESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSF 671 (714)
Q Consensus 597 L~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~--l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~--i~~~~ 671 (714)
++.. +-+...|+.+...+.+.|+.++|++.|+...+ +.|+ ...+..+-..+.+.|++++|+..+++... +.|+.
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 8764 34567788888888888888888888887754 4554 55677788888888888888888886554 57887
Q ss_pred HHHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 005106 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 672 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (714)
..|..---++.... .-....++++++.
T Consensus 755 ~Ty~sLL~a~~k~G----~le~A~~l~~~M~ 781 (1060)
T PLN03218 755 ITYSILLVASERKD----DADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 76654444433322 2334555555544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-09 Score=125.19 Aligned_cols=153 Identities=13% Similarity=0.030 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC--CC------cHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSV--TP------LGWM 451 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~--p~------~~~a 451 (714)
...+..+...+.+.|++++|++.|++.++.+. ...+..+-.++...|....+...+..+++.. |+ +-.+
T Consensus 189 ~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~ 268 (697)
T PLN03081 189 LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268 (697)
T ss_pred eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHH
Confidence 44566666777777777777777777765531 1222222233333344444433333333221 10 1122
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHH
Q 005106 452 YQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQ 529 (714)
Q Consensus 452 y~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~e 529 (714)
|.+. ++.++|...|++. .+.+...|+.+...|.+.|++++|+..|++..+ +.|+...+.....++...|+++
T Consensus 269 y~k~---g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 269 YSKC---GDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred HHHC---CCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence 2222 3335666555543 234555666666666666666666666665543 3444444444445555555555
Q ss_pred HHHHHHHHHHhh
Q 005106 530 AALCDVQAILTL 541 (714)
Q Consensus 530 ~Al~d~~~al~L 541 (714)
+|.+.+..+++.
T Consensus 343 ~a~~i~~~m~~~ 354 (697)
T PLN03081 343 HAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-09 Score=131.25 Aligned_cols=269 Identities=16% Similarity=0.085 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-------hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC--------
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-------IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-------- 447 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-------~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~-------- 447 (714)
......+|.++...|++++|...+++|++..+ ..+...+|.++...|++++|...+.+++.....
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 44445688999999999999999999988411 124456788999999999999999999876332
Q ss_pred -----cHHHHHHHHhcCChhHHHHHHHHHHhcCCC--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----
Q 005106 448 -----LGWMYQERSLYCEGDKRWEDLDKATALDPT--------LSYPYMYRASSLMTKQNVEAALAEINRILGFKL---- 510 (714)
Q Consensus 448 -----~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~--------~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P---- 510 (714)
.+.++..+ |+.++|...+++++++-.. ....+..+|.++...|++++|...+++++.+..
T Consensus 532 ~~~~~la~~~~~~---G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 608 (903)
T PRK04841 532 WSLLQQSEILFAQ---GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP 608 (903)
T ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc
Confidence 23333333 4559999999998886322 234567889999999999999999999988632
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccc
Q 005106 511 A--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 587 (714)
Q Consensus 511 ~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~ 587 (714)
. ...+..++.++...|++++|.+.++++.++.+.... ..................++.+.|..|..
T Consensus 609 ~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~----------- 677 (903)
T PRK04841 609 QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLR----------- 677 (903)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHH-----------
Confidence 2 333455788999999999999999999887554311 00000011111122223445555544322
Q ss_pred chHHHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHhcCCHHHH
Q 005106 588 GSLSVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEG 657 (714)
Q Consensus 588 ~al~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P------~~~ea~~~~G~~ly~~G~~eeA 657 (714)
+.....+... ..+..+|.++..+|++++|...+++|++... .-+.++..+|.+++..|+.++|
T Consensus 678 -------~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 678 -------QAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred -------hcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2211111111 2256789999999999999999999998743 3456889999999999999999
Q ss_pred HHHHHHHHhcCCCHH
Q 005106 658 LRKAEESIQMKRSFE 672 (714)
Q Consensus 658 l~~ye~Ai~i~~~~~ 672 (714)
...+++|+++-....
T Consensus 751 ~~~L~~Al~la~~~g 765 (903)
T PRK04841 751 QRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHhCccc
Confidence 999999999854433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-09 Score=127.04 Aligned_cols=324 Identities=10% Similarity=-0.008 Sum_probs=195.4
Q ss_pred ccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHh
Q 005106 340 VGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419 (714)
Q Consensus 340 v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~ 419 (714)
+.+..+.+..+++-..... ..+...+++..+.+... ..+...+..+-..+...|++++|.+.|++..+ ....+|.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g--~~~~a~~l~~~~~~~g~--~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n 358 (857)
T PLN03077 284 VDPDLMTITSVISACELLG--DERLGREMHGYVVKTGF--AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWT 358 (857)
T ss_pred CCCChhHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCC--ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHH
Confidence 3445555555655443321 23334445544443221 11345667778888899999999999998543 3345677
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhc--CCC---cHHHHHHHHhcCChhHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcC
Q 005106 420 GLARLGYIKGHKLWAYEKLNSVISS--VTP---LGWMYQERSLYCEGDKRWEDLDKATALDPT-LSYPYMYRASSLMTKQ 493 (714)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~--~p~---~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~-~~~ay~~rg~~l~~l~ 493 (714)
.+...|.+.|++++|++.|++..+. .|+ ...+....+..++.++|.+.++.+++.... +...|+.+...|.+.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 7888899999999999999877654 344 233333334455668888888888887543 4567888888999999
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHHHHhhhhhhHH-
Q 005106 494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHMLVREHIDNWTIA- 571 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~-L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A- 571 (714)
++++|...|++.. +|+...|......|...|++++|+..|++... +.|+...+..-..+....+.++...+-+..+
T Consensus 439 ~~~~A~~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 439 CIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CHHHHHHHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 9999999998875 46666677777778888999999999988874 4677655444333333333333332222211
Q ss_pred --------------------------------------HHHHhhhhccccccccc-hHHHHHHHHHhC--CCChhHHHHH
Q 005106 572 --------------------------------------DCWLQLYDRWSSVDDIG-SLSVIYQMLESD--APKGVLYFRQ 610 (714)
Q Consensus 572 --------------------------------------~~~~~l~~~~~~~~d~~-al~~~~qaL~l~--P~~~~~~~~~ 610 (714)
.+|..+...+...++.+ |+..|++|.+.. |+ ...+...
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~l 595 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISL 595 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHH
Confidence 22333333333334444 555666655532 33 2333333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 005106 611 SLLLLRLNCPEAAMRSLQLARQH---AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (714)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l---~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a 673 (714)
-.++.+.|+.++|++.++...+. .|+ .+.+..+..+|.+.|+++||...+++ +.++|+...
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~-m~~~pd~~~ 659 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINK-MPITPDPAV 659 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHH-CCCCCCHHH
Confidence 34455556666666666655532 232 34555555666666666666655554 345555553
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.2e-09 Score=108.08 Aligned_cols=274 Identities=15% Similarity=0.039 Sum_probs=199.4
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHh--
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-----GWMYQERSL-- 457 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~-----~~ay~~rg~-- 457 (714)
|-.|+-++...+.++|+..|-..++.++ ..++.-+|+.+..+|..+.||+.....+ ..|++ ..+.+++|+
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHH
Confidence 3456667777788888888888877754 3456678888888888888887765333 34432 223333332
Q ss_pred --cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHH---HHHHHHHHHhcCCHH
Q 005106 458 --YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---LEC---LELRFCFFLALEDYQ 529 (714)
Q Consensus 458 --~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~---~~~R~~~~~~lgd~e 529 (714)
.|.+|.|-..|..-++..---..|.-.+-++|...+.++.||...++...+.|+ .+. +--++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 133377777787777655555667777888888888888888888888888774 222 222556677777888
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC-hhHHH
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-GVLYF 608 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~-~~~~~ 608 (714)
.|+..+.+|++-||+. +.+...+|.+.....++++| +..++++++-||.. ++...
T Consensus 198 ~A~~~l~kAlqa~~~c------vRAsi~lG~v~~~~g~y~~A------------------V~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 198 RARELLKKALQADKKC------VRASIILGRVELAKGDYQKA------------------VEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred HHHHHHHHHHhhCccc------eehhhhhhHHHHhccchHHH------------------HHHHHHHHHhChHHHHHHHH
Confidence 8888888888888887 44666667777777777777 66777888888775 34566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCC
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQ 686 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~ 686 (714)
.+..++..+|++++.+..++++.+..+... +...+........-.++|-+...+=+.-+|+.- -+.+-.|-++|-+=
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 778899999999999999999999999854 555566666666667888889999999999999 67789999999764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-08 Score=118.80 Aligned_cols=251 Identities=10% Similarity=0.043 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH----Hh-
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER----SL- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~r----g~- 457 (714)
...+..+-..|...|++++|.+.|++..+. ...+|..+...+.+.|+.++|+..|++.+...+++...|... +.
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI 502 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhh
Confidence 345566777888889999999988875443 344677777788888999999888888775433333222111 11
Q ss_pred ----------------------------------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 458 ----------------------------------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN 503 (714)
Q Consensus 458 ----------------------------------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~ 503 (714)
.++.++|+..|+.. +.+...|+.+...|...|+.++|+..|+
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 12335555555543 3344555555555555555555555555
Q ss_pred HHHh--cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 504 RILG--FKLALECLELRFCFFLALEDYQAALCDVQAILT---LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 504 kAL~--l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~---L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
+.++ +.|+...+...-..+...|++++|...|+...+ +.|+-.. ..|.+.++
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~-----------------------y~~lv~~l 635 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH-----------------------YACVVDLL 635 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH-----------------------HHHHHHHH
Confidence 5544 344433333333345555555555555555542 2344211 11122222
Q ss_pred hccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 005106 579 DRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 657 (714)
Q Consensus 579 ~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA 657 (714)
-+ .++.+ |...++++ .+.|+ +..|..+-.+...-|+.+.|....+++++++|+++..++.+++++...|++++|
T Consensus 636 ~r---~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 636 GR---AGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred Hh---CCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 22 22222 35566665 35555 455655555667788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 005106 658 LRKAEESIQ 666 (714)
Q Consensus 658 l~~ye~Ai~ 666 (714)
....+.-.+
T Consensus 711 ~~vr~~M~~ 719 (857)
T PLN03077 711 ARVRKTMRE 719 (857)
T ss_pred HHHHHHHHH
Confidence 988776654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-09 Score=115.62 Aligned_cols=251 Identities=14% Similarity=0.001 Sum_probs=193.8
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHH
Q 005106 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNS 440 (714)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~ 440 (714)
...+..++. .+|...+.-+. .-..|......|+++.-...-...+.+ .++.-|+--|.+.+...++..|+..-.|
T Consensus 249 ~~a~~~Fe~-~~~~dpy~i~~--MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 249 FQAEDIFSS-TLCANPDNVEA--MDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred hHHHHHHHH-HhhCChhhhhh--HHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 344555666 44443332222 233466667778887766666665555 3444566667788899999999999999
Q ss_pred HHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHH
Q 005106 441 VISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECL 515 (714)
Q Consensus 441 aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~ 515 (714)
+|..+|++-.+|...|.. ++.++|+-.|+.|+.|.|-....|-.+-..|...|++.||+...+-++..=|+ ...+
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L 405 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL 405 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh
Confidence 999999999999888753 56699999999999999999999999999999999999999999999988775 7777
Q ss_pred HHHH-HHH-HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHH
Q 005106 516 ELRF-CFF-LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (714)
Q Consensus 516 ~~R~-~~~-~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~ 593 (714)
...| .++ ..----|+|..-++++++++|+|..+ .... | .|..+.+..+|+ ++.+
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A------V~~~------------A----EL~~~Eg~~~D~--i~LL 461 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA------VNLI------------A----ELCQVEGPTKDI--IKLL 461 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHH------HHHH------------H----HHHHhhCccchH--HHHH
Confidence 7776 333 33334689999999999999999532 2222 1 233333344444 8999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005106 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (714)
Q Consensus 594 ~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (714)
++.|...|.+ .+|.-+|.++...|-+++||+.|..|++++|++--++
T Consensus 462 e~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 462 EKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 9999998875 6799999999999999999999999999999988654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-10 Score=127.53 Aligned_cols=148 Identities=10% Similarity=0.047 Sum_probs=110.5
Q ss_pred CHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccc
Q 005106 511 ALECL--ELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585 (714)
Q Consensus 511 ~~~~~--~~R~~~~~~lgd---~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~ 585 (714)
++++| +.||.-+...++ .+.|+..|++|+++||+|..++...+..+... ..|... . ..
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~------~~~~~~----------~-~~ 398 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVR------HSQQPL----------D-EK 398 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH------HhcCCc----------c-HH
Confidence 34544 557776665555 88999999999999999955433221111110 000000 0 00
Q ss_pred ccc-hHHHHHHHHHh--CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 586 DIG-SLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 586 d~~-al~~~~qaL~l--~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye 662 (714)
+.. +.....+++++ +|.++.+|.-+|......|++++|++.+++|++++| ++.+|..+|.++...|++++|++.|+
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111 23456677774 899999999999999999999999999999999999 58999999999999999999999999
Q ss_pred HHHhcCCCHHHHHH
Q 005106 663 ESIQMKRSFEAFFL 676 (714)
Q Consensus 663 ~Ai~i~~~~~a~~~ 676 (714)
+|+.++|+++.|++
T Consensus 478 ~A~~L~P~~pt~~~ 491 (517)
T PRK10153 478 TAFNLRPGENTLYW 491 (517)
T ss_pred HHHhcCCCCchHHH
Confidence 99999999997765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-09 Score=113.37 Aligned_cols=218 Identities=12% Similarity=0.070 Sum_probs=139.6
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC---
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC--- 459 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~--- 459 (714)
|..+.|++.+..|+|++|.+.|+.||.-+. ..++++.|..+-.+|+.++|+.+|-+.-.+--+++..+.+.+.++
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL 571 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 345567777777777777777777776643 446677777777777777777777776666666666666665432
Q ss_pred -ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 460 -EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 460 -~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
....|++.|.+|..+-|+++.....+|.+|-+.|+-.+|...+=..-.+=| +.+....++.-|....=+++||..|++
T Consensus 572 ed~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 336677777777777777777777777777777777777777766666666 356556666667777777777777777
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
|--+.|+-.-+ ++. .|-|+ - +.+.+. |+..|.+.....|.+.+..-.+-.+--.
T Consensus 652 aaliqp~~~kw-------qlm-----------iasc~----r---rsgnyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 652 AALIQPNQSKW-------QLM-----------IASCF----R---RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHhcCccHHHH-------HHH-----------HHHHH----H---hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 77777774211 110 12111 1 112222 4778888888889888766444444444
Q ss_pred cCChHHHHHHHH
Q 005106 617 LNCPEAAMRSLQ 628 (714)
Q Consensus 617 lg~~eeAl~~~~ 628 (714)
+|--+ |.+..+
T Consensus 707 lgl~d-~key~~ 717 (840)
T KOG2003|consen 707 LGLKD-AKEYAD 717 (840)
T ss_pred ccchh-HHHHHH
Confidence 55433 444433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=126.04 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=85.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd 527 (714)
|..++..|++ ++|+..|++||+++|+++.+|.+||.++..+|++++|+.++++||+++|+ +.+++.+|.++..+|+
T Consensus 9 a~~a~~~~~~---~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDF---ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3344444444 88999999999999999999999999999999999999999999999996 7888889999999999
Q ss_pred HHHHHHHHHHHHhhCCCchh
Q 005106 528 YQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~~~ 547 (714)
+++|+..|+++++++|++..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999854
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-10 Score=123.44 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~ 560 (714)
+...|..+...|++++|+..|++||+++|+ +.++.+||.+|..+|++++|+.++++|++++|++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--------------- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--------------- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence 456788888899999999999999999996 7888889999999999999888887777777765
Q ss_pred HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 561 l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
+.+|+++|.++..+|++++|+..|++|++++|++..+
T Consensus 70 -------------------------------------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 70 -------------------------------------------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4567889999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 005106 641 LVYEGWILYDT 651 (714)
Q Consensus 641 ~~~~G~~ly~~ 651 (714)
+..++.+...+
T Consensus 107 ~~~l~~~~~kl 117 (356)
T PLN03088 107 TKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHH
Confidence 98888886655
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-09 Score=108.60 Aligned_cols=177 Identities=16% Similarity=0.018 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
..+...+-++...+|++... .+++..+...|+-+.++....++.--.|. .+.+...|......|++.+|+..++++.+
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 45666777788888888888 88888888888888888888887666664 56566677778888888888888888888
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
++|++ ..++..++.......+.+.| -.-|.|++++.|+++...+|+|..+.-.|+.
T Consensus 129 l~p~d------~~~~~~lgaaldq~Gr~~~A------------------r~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 129 LAPTD------WEAWNLLGAALDQLGRFDEA------------------RRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred cCCCC------hhhhhHHHHHHHHccChhHH------------------HHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 88887 44555555555555555555 3457888888888888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
+.|...+..|...-+.+.-+..|+..+.-..|++++|-....+
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999999999988888888999999999999999988755444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-08 Score=114.29 Aligned_cols=290 Identities=13% Similarity=-0.015 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC--
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC-- 459 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~-- 459 (714)
.+++....-..+.|+|....+..++.|+. .|.++++-.|..+.-+|+.++|+.....++..++.....|.-.|.+.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 44555555667788999999999999887 68889999999999999999999999999999999888888887653
Q ss_pred --ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 460 --EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 460 --~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
++++|+.+|..|+.++|+|.+.|..++....++++++.....-++-++++|+ -..|...+..+...|++..|+.-.+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4499999999999999999999999999999999999999999999999997 4556667788999999999988777
Q ss_pred HHHhhC---CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC---ChhHHHHH
Q 005106 537 AILTLS---PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---KGVLYFRQ 610 (714)
Q Consensus 537 ~al~L~---P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~---~~~~~~~~ 610 (714)
.-.... |.... +-+.....-+..+....+..++| ++.-....|. ..-....+
T Consensus 168 ef~~t~~~~~s~~~-~e~se~~Ly~n~i~~E~g~~q~a---------------------le~L~~~e~~i~Dkla~~e~k 225 (700)
T KOG1156|consen 168 EFEKTQNTSPSKED-YEHSELLLYQNQILIEAGSLQKA---------------------LEHLLDNEKQIVDKLAFEETK 225 (700)
T ss_pred HHHHhhccCCCHHH-HHHHHHHHHHHHHHHHcccHHHH---------------------HHHHHhhhhHHHHHHHHhhhH
Confidence 666654 43211 11111111111111111112222 1111111111 12234568
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCC
Q 005106 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY-DTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDS 688 (714)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly-~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~ 688 (714)
|.++.++|++|+|...|+.-+..+|+|.+=+..+-.++. -++..+.=-+.|.+.-+.=|-++ .=++==..+-++++--
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHH
Confidence 899999999999999999999999999987777767774 44443333366777666655555 3233333344444443
Q ss_pred CchhhHH
Q 005106 689 SCSSTVV 695 (714)
Q Consensus 689 ~~~~~~~ 695 (714)
.-+.++.
T Consensus 306 ~vdkyL~ 312 (700)
T KOG1156|consen 306 IVDKYLR 312 (700)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-09 Score=108.60 Aligned_cols=164 Identities=16% Similarity=0.007 Sum_probs=136.0
Q ss_pred HHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH----hcCChhHHHHHHHHHHhcC
Q 005106 402 AEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALD 475 (714)
Q Consensus 402 A~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg----~~~~~~eAl~d~~kAi~Ld 475 (714)
|...+-++...+| ... .+++..++..|+-+.+.....++.-.+|..+..+...| ..+++.+|+..+.+|.+++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 3344444444433 445 78888999999999999999988888887766663332 2356699999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
|+++.+|+-+|.+|.++||+++|-..|++|+++.|+ +....|.|+.+.-.||++.|...+..+...-|.+ ..+
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad------~~v 204 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD------SRV 204 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc------hHH
Confidence 999999999999999999999999999999999996 8889999999999999999999999999988876 446
Q ss_pred HHHHHHHHHhhhhhhHHH
Q 005106 555 SQLHMLVREHIDNWTIAD 572 (714)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~ 572 (714)
.+.+.++...+.++..|.
T Consensus 205 ~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 205 RQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHHHHHHhhcCChHHHH
Confidence 677777777777777774
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.2e-08 Score=91.71 Aligned_cols=233 Identities=22% Similarity=0.183 Sum_probs=148.2
Q ss_pred ccchHHHHHHHHHHHhccch----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHH
Q 005106 396 RKEYDEAEHLFEAAVNAGHI----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKA 471 (714)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~~~----~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kA 471 (714)
.+.+..+...+..++...+. ......+..+...|++..++..+ ..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~ 85 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELL------------------------------EKA 85 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHH------------------------------HHH
Confidence 34556666666666655332 33344444555555555554444 444
Q ss_pred Hh--cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCC-ch
Q 005106 472 TA--LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFC-FFLALEDYQAALCDVQAILTLSPD-YR 546 (714)
Q Consensus 472 i~--LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-~~~~~R~~-~~~~lgd~e~Al~d~~~al~L~P~-~~ 546 (714)
+. ..|.....+...|..+...+++.+|+..+.+++..++.. ......+. ++...|+++.|+..|.+++..+|. ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (291)
T COG0457 86 LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNE 165 (291)
T ss_pred HhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Confidence 43 566666666666666666666777777777777666643 22333344 677777777777777777666663 10
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCChHHHHH
Q 005106 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-KGVLYFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~-~~~~~~~~g~~L~~lg~~eeAl~ 625 (714)
. .......+.......+++. ++..+.+++...|. ....+.+.+..+...+..++|+.
T Consensus 166 ~----~~~~~~~~~~~~~~~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 223 (291)
T COG0457 166 L----AEALLALGALLEALGRYEE------------------ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223 (291)
T ss_pred h----HHHHHHhhhHHHHhcCHHH------------------HHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHH
Confidence 0 1111111111111112222 35667777777777 68888888888899999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 626 SLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 626 ~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
.+..++...|+........+.++...|.++++...+++++...|. ++..|+.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 278 (291)
T COG0457 224 YYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD---LYNLGLALLL 278 (291)
T ss_pred HHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc---hhhhhHHHHH
Confidence 999999999998888899999999778899999999999999987 4444444433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-09 Score=118.18 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=121.5
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHH---hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhh-hhccccc--cc
Q 005106 516 ELRFCFFLALE---DYQAALCDVQAIL---TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL-YDRWSSV--DD 586 (714)
Q Consensus 516 ~~R~~~~~~lg---d~e~Al~d~~~al---~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l-~~~~~~~--~d 586 (714)
+.||.-....+ +.+.|+..|.+|+ ++||+|..+++-. |.|+++. .-.|+.. +.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~l------------------A~~h~~~~~~g~~~~~~~~ 320 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLL------------------AECHMSLALHGKSELELAA 320 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHH------------------HHHHHHHHHhcCCCchHHH
Confidence 45555443322 5667888888888 8888886544332 2233333 3334331 12
Q ss_pred cchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 587 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 587 ~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.+++...++|+++||.++.+++..|.++...|+++.|+..+++|+.++|+++.++++.||++.-.|+.++|++..++|++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 22677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHH-HHHHHHHH--hhccCCCC
Q 005106 667 MKRSFE-AFFLKAYA--LADSSQDS 688 (714)
Q Consensus 667 i~~~~~-a~~~~~~~--~~~~~~~~ 688 (714)
+.|.=. |=-+|=+. +.-+.||-
T Consensus 401 LsP~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
T PRK11906 401 LEPRRRKAVVIKECVDMYVPNPLKN 425 (458)
T ss_pred cCchhhHHHHHHHHHHHHcCCchhh
Confidence 999887 77777665 55666663
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-10 Score=94.22 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 005106 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKR 669 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G-~~eeAl~~ye~Ai~i~~ 669 (714)
++..|+++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+| ++++|+..+++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 68899999999999999999999999999999999999999999999999 79999999999999998
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-10 Score=92.94 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSP 543 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg-d~e~Al~d~~~al~L~P 543 (714)
+++..|.++|.+++.+|++++|+..|++||+++|+ +..++++|.++..+| ++++|+.+|+++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36789999999999999999999999999999997 888999999999999 79999999999999998
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-10 Score=121.84 Aligned_cols=222 Identities=11% Similarity=0.055 Sum_probs=146.4
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc
Q 005106 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL 525 (714)
Q Consensus 447 ~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l 525 (714)
.-|+-|+.+|.| +|||.+|.++|.++|.++-.|.|||.+|..+++|..|..|.+.||.||-. ..+|..|+.+...+
T Consensus 102 E~GN~yFKQgKy---~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 102 ERGNTYFKQGKY---EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred Hhhhhhhhccch---hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 356667777666 89999999999999999999999999999999999999999999999876 56677789999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHH-HHHH--HHHHHHhhhhhhHHH-HHHhhh-hccccc------cccchHHHHH
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVA-ASQL--HMLVREHIDNWTIAD-CWLQLY-DRWSSV------DDIGSLSVIY 594 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~-a~~~--~~~l~~~~~~~~~A~-~~~~l~-~~~~~~------~d~~al~~~~ 594 (714)
|..++|..||+.+|+|.|+.....-..+ ...+ ...+...-.-+..|. ...|.. .+-..+ ..-.++.++-
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~ 258 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVV 258 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEee
Confidence 9999999999999999999743211000 0000 000000000000000 000100 000000 0111344555
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+.++-+-.+..+..+ +..+.+.-.+++|+-...+++.++|..--+.-.+|.+---.|...|+-+.++-++.+.|..+
T Consensus 259 ~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 259 SPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred ccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence 555666666666666 66667777777777777777777777766666677777777777777777777777766654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-09 Score=102.47 Aligned_cols=76 Identities=8% Similarity=-0.049 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCHHHHHHHH
Q 005106 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK---RSFEAFFLKA 678 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~---~~~~a~~~~~ 678 (714)
+++.|+++|.++..+|++++|+..|.+|+.++|+++.+++|.|.|++..|+.++|.+.|+.||++- |.+..---||
T Consensus 68 ~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A 146 (157)
T PRK15363 68 SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRA 146 (157)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence 356678888888888888888888888888888888888888888888888888888888888763 5554444444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-08 Score=112.51 Aligned_cols=238 Identities=12% Similarity=0.080 Sum_probs=180.7
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 005106 425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (714)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~ 500 (714)
.+..++|...++.....++..|..|..+-..|. .++.++|...-..+++.||....-|.-.|.++...++|+|||.
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 467789999999999999999999999888875 3566999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 501 EINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 501 ~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
.|+.|+.+.|+ .+.|.-.+.+...+||++....--.+.+++.|.+.+ +.|-..+..+.+.-..+....++.. +.-
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~---~t~ 173 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFE---KTQ 173 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhh
Confidence 99999999996 788888999999999999999999999999999865 4555555555554444444333332 111
Q ss_pred hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 005106 579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 579 ~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
+.-. +-.++++ .++...+...+...|.+++|++....-=..--|.---.-.+|.++.++|+.++|+
T Consensus 174 ~~~~------s~~~~e~--------se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 174 NTSP------SKEDYEH--------SELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred ccCC------CHHHHHH--------HHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 0000 0111222 2233445566777888777776654432222223333456789999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHH
Q 005106 659 RKAEESIQMKRSFEAFFLKAY 679 (714)
Q Consensus 659 ~~ye~Ai~i~~~~~a~~~~~~ 679 (714)
..|..-|..+|+.-+|+..-.
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHH
Confidence 999999999999998876543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.6e-08 Score=100.20 Aligned_cols=182 Identities=21% Similarity=0.200 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHH
Q 005106 364 KTVCFLERLLESA-ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNS 440 (714)
Q Consensus 364 ~~~~LLe~Lv~~a-~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~ 440 (714)
.+..+=+.|.+.| ..+-++..|..++|.-|...|-||.|+..|...++.+ -..|...+-.+|....++.+|++.-++
T Consensus 87 RAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~ 166 (389)
T COG2956 87 RAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAER 166 (389)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333334444444 3455677888889999999999999999998877752 244666777888888888888888888
Q ss_pred HHhcCCC-----cHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 441 VISSVTP-----LGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 441 aI~~~p~-----~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
...+.+. .+.-|.+.+.- ...+.|+..+.||++-||+.+.|=+-+|.+.+..|+|+.|+..++++++.||+
T Consensus 167 L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 167 LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 8777553 45566665432 23377888888899999999988888999999999999999999999988887
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 512 --LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 512 --~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
++.+..+..+|..+|+.++.+.-.+++.+..|+-
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 5666777788899999999988888888888774
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.4e-09 Score=102.33 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=127.2
Q ss_pred HHHHHHHHhcCC----hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 005106 449 GWMYQERSLYCE----GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFL 523 (714)
Q Consensus 449 ~~ay~~rg~~~~----~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-~~~~~R~~~~~ 523 (714)
+.++++||.+++ ..-|.-||++|+.+.|+.+.+++.+|.-+...|+|+.|.+.|+-.+++||.. -+..|||..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 455566665432 2666779999999999999999999999999999999999999999999975 44567999889
Q ss_pred hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC
Q 005106 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (714)
Q Consensus 524 ~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~ 603 (714)
.-|++.-|.+|+.+--+-||+++. |.-=.. +-+..-+..+|. ....+|+-.++-..
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPf---R~LWLY----l~E~k~dP~~A~-----------------tnL~qR~~~~d~e~ 200 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPF---RSLWLY----LNEQKLDPKQAK-----------------TNLKQRAEKSDKEQ 200 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChH---HHHHHH----HHHhhCCHHHHH-----------------HHHHHHHHhccHhh
Confidence 999999999999999999999863 000000 111111222221 22334444433221
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
..|+-.+ ..+|... -...++++.+-..++ .|+++++|-.+...|+.++|...|.=||+-+
T Consensus 201 -WG~~iV~---~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 201 -WGWNIVE---FYLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred -hhHHHHH---HHHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1122222 2233332 112223333333332 5789999999999999999999999999863
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.8e-07 Score=99.46 Aligned_cols=251 Identities=10% Similarity=-0.040 Sum_probs=179.3
Q ss_pred HhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC----ChhHHHHHH
Q 005106 394 LLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC----EGDKRWEDL 468 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~----~~~eAl~d~ 468 (714)
....+++.|...|.+|-.. +-...|..-+++..-+|..++|++.++++++.+|.....|...|++. ..+.|.+.|
T Consensus 629 ~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred hccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456777777777777666 44455666666666777777777777777777777777777776642 236677777
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 469 ~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
..-+...|+....|..++.+--..|+.-.|-..++|+.--||. ...|...-..-+..|+.+.|.....+||+-.|+...
T Consensus 709 ~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 709 LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch
Confidence 7777778887777777777777777777777778877777775 444444444566777777777777777777777621
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 005106 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (714)
Q Consensus 548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~ 627 (714)
.....=-+....++- .-.-.||..+-++++...-.|.++..-..++.|..+|
T Consensus 789 ------LWaEaI~le~~~~rk----------------------Tks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 789 ------LWAEAIWLEPRPQRK----------------------TKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred ------hHHHHHHhccCcccc----------------------hHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111 1235678888899999999999999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 628 ~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.+|+.++|++++++.+.=-.....|.-+.-...|.+-..-.|.+.
T Consensus 841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 999999999999988877777778877777777777777777654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-08 Score=118.49 Aligned_cols=254 Identities=11% Similarity=-0.022 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~ 459 (714)
+..++..+...+...+++++|++..+.+++..| ...++.+|.++++.|++..|... +++..-+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~---------- 97 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL---------- 97 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc----------
Confidence 345667788888899999999999999998854 55678889999999997777554 4444433221
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
. ..++++|-+.+...|++-.|++.+|.+|-.+|+.++|.+.|+++|+++|+ +.++++.|..|... +.++|+..+.+|
T Consensus 98 ~-~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 98 K-WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred c-hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 0 24556666666667777777777777777777777777777777777774 67777777777777 777777777777
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC---ChhHHHHHHHHHH
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---KGVLYFRQSLLLL 615 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~---~~~~~~~~g~~L~ 615 (714)
++..=+...+ ....+. |..+.+. ..+|+.-+..+.+.|.-.-+ -++++.-.=..+-
T Consensus 176 V~~~i~~kq~-------------~~~~e~------W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~ 234 (906)
T PRK14720 176 IYRFIKKKQY-------------VGIEEI------WSKLVHY--NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYK 234 (906)
T ss_pred HHHHHhhhcc-------------hHHHHH------HHHHHhc--CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 7652221110 011111 2222221 12223223333333332222 2222333333444
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHhcCCC
Q 005106 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT--------------------SHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 616 ~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~--------------------G~~eeAl~~ye~Ai~i~~~ 670 (714)
.++++.+++..++.+|+++|+|..|...+..++-.. ..+..++..||+=|..++.
T Consensus 235 ~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G 309 (906)
T PRK14720 235 ALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTG 309 (906)
T ss_pred hhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCC
Confidence 455555566666666666666555555555554322 3467788888888777665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=112.03 Aligned_cols=155 Identities=12% Similarity=0.033 Sum_probs=110.3
Q ss_pred hHHHHHHHHHH---hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 462 DKRWEDLDKAT---ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 462 ~eAl~d~~kAi---~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
+.|+..|++|+ ++||+++.||..++.+++... ..|+.- ...+..+|++.-++|
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~-----------------------~~g~~~-~~~~~~~a~~~A~rA 330 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA-----------------------LHGKSE-LELAAQKALELLDYV 330 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH-----------------------HhcCCC-chHHHHHHHHHHHHH
Confidence 45555566666 666666666666555554320 000000 123455677777777
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (714)
+++||+++. +....+.+.....+++.| .+.++||++++|+++.+|+..|.++..-|
T Consensus 331 veld~~Da~------a~~~~g~~~~~~~~~~~a------------------~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G 386 (458)
T PRK11906 331 SDITTVDGK------ILAIMGLITGLSGQAKVS------------------HILFEQAKIHSTDIASLYYYRALVHFHNE 386 (458)
T ss_pred HhcCCCCHH------HHHHHHHHHHhhcchhhH------------------HHHHHHHhhcCCccHHHHHHHHHHHHHcC
Confidence 777777744 333334333444444444 66788888888888999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEES 664 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-ly~~G~~eeAl~~ye~A 664 (714)
+.++|++.+++|++++|.-.-|-...-|+ .|.....++|++.|-+-
T Consensus 387 ~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 387 KIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred CHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 99999999999999999999999999999 99999999999988653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-09 Score=102.76 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|...|+-...+||.++..|+++|.++..+|++++||..|.+|+.++|+ |..+++.|.++..+|+.++|.+.|+.|+.
T Consensus 52 ~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 52 AGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777888899999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred hCC
Q 005106 541 LSP 543 (714)
Q Consensus 541 L~P 543 (714)
..-
T Consensus 132 ~~~ 134 (157)
T PRK15363 132 ICG 134 (157)
T ss_pred Hhc
Confidence 873
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-07 Score=115.41 Aligned_cols=280 Identities=10% Similarity=-0.019 Sum_probs=190.2
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-c------c----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-G------H----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-----GW 450 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~------~----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~-----~~ 450 (714)
..++.+....|++++|...+.+|.+. . + ......+|.++...|++++|...+.++++..+.. +.
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 45677788899999999999988654 1 1 1223456788999999999999999999864431 22
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----C----
Q 005106 451 MYQERSL----YCEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKL-----A---- 511 (714)
Q Consensus 451 ay~~rg~----~~~~~eAl~d~~kAi~LdP~~------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-----~---- 511 (714)
++...|. .++.++|...+++|+++.... ..++.++|.++...|++++|...+++++.+-. .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3333332 356699999999999774432 34667899999999999999999999998621 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 591 (714)
...+..++.++...|++++|...+++++++...... .....+....+.+.....+++.| ..
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A------------------~~ 633 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNA------------------RR 633 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHH------------------HH
Confidence 122345778889999999999999999987553211 01122333444445555555555 55
Q ss_pred HHHHHHHhCCCCh---hHHH----HHHHHHHHcCChHHHHHHHHHHHHhCCCChhH----HHHHHHHHHhcCCHHHHHHH
Q 005106 592 VIYQMLESDAPKG---VLYF----RQSLLLLRLNCPEAAMRSLQLARQHAASDHER----LVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 592 ~~~qaL~l~P~~~---~~~~----~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea----~~~~G~~ly~~G~~eeAl~~ 660 (714)
.+++++.+.+... .... .....+...|..++|.+.+++.....+..... +.++|.++..+|++++|+..
T Consensus 634 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 713 (903)
T PRK04841 634 YLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEII 713 (903)
T ss_pred HHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666665533221 1111 12345566899999999988876644333322 46899999999999999999
Q ss_pred HHHHHhcCCC------HH-HHHHHHHHhhccC
Q 005106 661 AEESIQMKRS------FE-AFFLKAYALADSS 685 (714)
Q Consensus 661 ye~Ai~i~~~------~~-a~~~~~~~~~~~~ 685 (714)
++++++.... .. +..+.|.++.-.+
T Consensus 714 l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 714 LEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 9999986211 11 4555666655444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-06 Score=94.42 Aligned_cols=277 Identities=16% Similarity=0.118 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCCc------HHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPL------GWMY 452 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~--~p~~------~~ay 452 (714)
+...-+-|...+.-|+|..|++...++-+-. |.-++..-+++-.++|+.+.|=.+++++-+. +++. +...
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4445567888899999999999999976664 4444555577899999999999999999998 4432 3333
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CHHHHHHHHH--HHHhcC
Q 005106 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFC--FFLALE 526 (714)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P----~~~~~~~R~~--~~~~lg 526 (714)
.++|.| ..|..-.+++.+..|.++....-.--+|...|++++.+....+.-+-.- ...-+.+.++ ++.+.+
T Consensus 164 l~~~d~---~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 164 LNRRDY---PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HhCCCc---hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 444444 9999999999999999999999999999999999999988877665433 1333444443 344444
Q ss_pred CHHHHHH------HHHHHHhhCCCchhhh-hh-------HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 005106 527 DYQAALC------DVQAILTLSPDYRMFE-GR-------VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (714)
Q Consensus 527 d~e~Al~------d~~~al~L~P~~~~~~-~~-------~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 592 (714)
+-+.+.- +..+.++-+|.-...+ -+ ..|... ..+...++|+.= +..+++++.--|.-.=+..
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~--i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEI--IEDALKRQWDPR--LCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHH--HHHHHHhccChh--HHHHHhhcCCCCchHHHHH
Confidence 4443333 2233444455432211 00 001111 112222222222 2344444333332223557
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
+++.+...|.++.++..+|.+..+.+.+.+|...++.|+...|+ ++.+..+|-++-.+|+.++|-+.+++++.+
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888876 456777888888888888888888887754
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8e-09 Score=118.46 Aligned_cols=144 Identities=17% Similarity=0.128 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 005106 383 LLAFHQLGCVRLLRK---EYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g---~y~eA~~~f~~AL~~~~~~a--~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~ 457 (714)
+..++.+|..+..++ .+..|+.+|++||+++|.++ +.+++.++.....+. + .. .+.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-------------~-~~-----~~~ 399 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-------------P-LD-----EKQ 399 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-------------C-cc-----HHH
Confidence 344466776666543 47788888888888866554 344444443221111 1 00 001
Q ss_pred cCChhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 458 YCEGDKRWEDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~L--dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
...+.....+|+.+ +|..+.+|.-+|.+....|++++|...++||++++|+...|..+|.++...|++++|+..|
T Consensus 400 ---l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 400 ---LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred ---HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 14555666777774 8888899999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHhhCCCchhh
Q 005106 536 QAILTLSPDYRMF 548 (714)
Q Consensus 536 ~~al~L~P~~~~~ 548 (714)
++|+.++|.+..+
T Consensus 477 ~~A~~L~P~~pt~ 489 (517)
T PRK10153 477 STAFNLRPGENTL 489 (517)
T ss_pred HHHHhcCCCCchH
Confidence 9999999998643
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8e-09 Score=101.56 Aligned_cols=66 Identities=8% Similarity=0.076 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCH
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH--------------CEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~--------------~eeAl~~ye~Ai~i~~~~ 671 (714)
+++++|.++.++|++++|+..+++|+++.|++..++.++|+++..+|+ +++|++.+++++.++|+.
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 344445555555555555555555555555555555555555555444 677777777777777765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.4e-09 Score=109.75 Aligned_cols=248 Identities=15% Similarity=0.091 Sum_probs=172.8
Q ss_pred HhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHH
Q 005106 394 LLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWE 466 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~~~---~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~ 466 (714)
+-.|.|..++..++ .....+ ......+.|.+..+|++...+....+.- .|.+. +......| ...+.++.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~-av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQ-AVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCH-HHHHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHH-HHHHHHHHHhCccchHHHHH
Confidence 45688888887776 112222 2345678889999999988776654311 34332 22222222 12356666
Q ss_pred HHHHHHhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 467 DLDKATALDP--TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 467 d~~kAi~LdP--~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
.++..+.-.. .++....--|.++...|++++|+..+.+. .+.++...+-.+++.++|.+.|.+.++..-+.+.|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 6655443332 34455566778888899999999988775 34676666778999999999999999999999988
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (714)
.. ..+ .|.+|+.++..-..+.+ |.-.|+...+..|.++...+.++.+...+|+++||.
T Consensus 164 ~~-------l~q-------------La~awv~l~~g~e~~~~--A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 164 SI-------LTQ-------------LAEAWVNLATGGEKYQD--AFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp HH-------HHH-------------HHHHHHHHHHTTTCCCH--HHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred HH-------HHH-------------HHHHHHHHHhCchhHHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 53 222 37789888876433322 588999988888999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCH
Q 005106 625 RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR-KAEESIQMKRSF 671 (714)
Q Consensus 625 ~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~-~ye~Ai~i~~~~ 671 (714)
+.+++|++.+|++++++.|+..+-+.+|+-.++.. ..++.-...|+-
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999955554 444444467754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=99.89 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 005106 495 VEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (714)
+..+.+.+.+.+..++. ...+++.|.++..+|++++|+..|++++.+.|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------------------- 69 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------------------- 69 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------------------------
Confidence 44555555555555552 45566677788888888888888888888776531
Q ss_pred HHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH--
Q 005106 572 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY-- 649 (714)
Q Consensus 572 ~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly-- 649 (714)
..+.+|+++|.++..+|++++|+..+++|++++|.+++.+.++|.+++
T Consensus 70 ------------------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 70 ------------------------------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred ------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 112367888889999999999999999999999999999888888888
Q ss_pred -----hcCCHH-------HHHHHHHHHHhcCCC
Q 005106 650 -----DTSHCE-------EGLRKAEESIQMKRS 670 (714)
Q Consensus 650 -----~~G~~e-------eAl~~ye~Ai~i~~~ 670 (714)
.+|+++ +|+..|++++..+|.
T Consensus 120 ~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 120 GEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred hHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 777766 455555556666664
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-09 Score=110.99 Aligned_cols=62 Identities=13% Similarity=-0.037 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P------~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
..+.+|+.+..+..++.|+...++=+.+.- ....+.|.+|..+-.+|..++|+-..++++.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 467889999999999999988887666543 45678999999999999999999999988875
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=122.21 Aligned_cols=155 Identities=7% Similarity=-0.087 Sum_probs=136.3
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 005106 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (714)
Q Consensus 471 Ai~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~ 549 (714)
+...+|++..++..+..++...|++++|+...+.+++..|+ ...++..|.++...+++++|..- .++.+-|++
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~---- 96 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN---- 96 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc----
Confidence 45678999999999999999999999999999999999997 78888899999999998877776 666655554
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 005106 550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (714)
Q Consensus 550 ~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~ 629 (714)
.+...+..+.+.+.-.|.+-.+++.+|.++.++|+.++|.+.|++
T Consensus 97 -----------------------------------~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 97 -----------------------------------LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred -----------------------------------cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 122235667777777899999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 630 Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
+++++|+|+.+++|+|-.|-.. ++++|...|.+|+..
T Consensus 142 ~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 142 LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999986
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=91.01 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
..++.+|..+...|++++|+..|++++..+|+ +.+++.+|.++...|++++|+..|++++..+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 45566666666666666666666666666653 2344556666666666666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=91.55 Aligned_cols=105 Identities=14% Similarity=0.058 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 005106 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (714)
Q Consensus 513 ~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 592 (714)
+.++..|..+...|++++|+..|+++++.+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------------- 35 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS----------------------------------------------- 35 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----------------------------------------------
Confidence 456778888899999999999999998888875
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
|..+.+++.+|.++.+.|++++|+..+++++...|++ +++++.+|+++..+|++++|+..+++++...|
T Consensus 36 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 36 --------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred --------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 1224567889999999999999999999999999885 67899999999999999999999999999999
Q ss_pred CHH
Q 005106 670 SFE 672 (714)
Q Consensus 670 ~~~ 672 (714)
+..
T Consensus 108 ~~~ 110 (119)
T TIGR02795 108 GSS 110 (119)
T ss_pred CCh
Confidence 876
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-09 Score=117.37 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=83.9
Q ss_pred HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHHH
Q 005106 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER---LVYEGWILYDTSHCEEGLRKAEESIQM-KRSFEA 673 (714)
Q Consensus 598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea---~~~~G~~ly~~G~~eeAl~~ye~Ai~i-~~~~~a 673 (714)
+-+|+++.+|+|+|.+|..+|++++|+..|++|++++|+++++ |+|+|.+|..+|++++|++.+++||++ +|.|.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~- 147 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFS- 147 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHH-
Confidence 3689999999999999999999999999999999999999976 999999999999999999999999998 44443
Q ss_pred HHHHHHHhhccCCCCC-chhhHHHHHHHhhcC
Q 005106 674 FFLKAYALADSSQDSS-CSSTVVSLLEDALKC 704 (714)
Q Consensus 674 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 704 (714)
++..|..+||= .....-+|+|++-++
T Consensus 148 -----~i~~DpdL~plR~~pef~eLlee~rk~ 174 (453)
T PLN03098 148 -----TILNDPDLAPFRASPEFKELQEEARKG 174 (453)
T ss_pred -----HHHhCcchhhhcccHHHHHHHHHHHHh
Confidence 45677766543 223445566665543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-08 Score=92.48 Aligned_cols=87 Identities=24% Similarity=0.275 Sum_probs=79.2
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---H--HHHHHHHHHHHhcCCHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---L--ECLELRFCFFLALEDYQAALC 533 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~--~~~~~R~~~~~~lgd~e~Al~ 533 (714)
++.++|++-|.+||.+.|..+.+|+||+.++.-+|+.++|+.+++||+++..+ . .++..||.+|..+|+.+.|.+
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 44499999999999999999999999999999999999999999999999653 2 345669999999999999999
Q ss_pred HHHHHHhhCCCc
Q 005106 534 DVQAILTLSPDY 545 (714)
Q Consensus 534 d~~~al~L~P~~ 545 (714)
||.+|-+|...+
T Consensus 137 DFe~AA~LGS~F 148 (175)
T KOG4555|consen 137 DFEAAAQLGSKF 148 (175)
T ss_pred hHHHHHHhCCHH
Confidence 999999998887
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-08 Score=97.63 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=62.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
|..+.+|+++|.++...|++++|+..|++++++.|+ ...+.++|.++..+|++++|+..|+++++++|++.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 355677899999999999999999999999988775 35677899999999999999999999999999874
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.7e-07 Score=102.95 Aligned_cols=257 Identities=15% Similarity=0.044 Sum_probs=165.4
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC------
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC------ 459 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~------ 459 (714)
....++.+.|++++|++..++.-.. +....+-.+|.++.++|++++|...|...|..+|++..-|.......
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 3456778889999999999875544 55556677899999999999999999999999999887776663321
Q ss_pred ---ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH---HHHHH
Q 005106 460 ---EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDY---QAALC 533 (714)
Q Consensus 460 ---~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~---e~Al~ 533 (714)
..+.-.+.|+...+..|....+ ..+...+..-..+.+.+..|=+-.--+--|..+.+.--+|...... ++-+.
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 1244456777777777764422 2333333333345544444433221121133333433344322221 12222
Q ss_pred HHHHHHhhCCCchhhh--------hhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 534 DVQAILTLSPDYRMFE--------GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 534 d~~~al~L~P~~~~~~--------~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
.|...++-++...... ...-+...+ .|.|+..+.++ .|+..+++||+..|..++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l----------------Aqhyd~~g~~~--~Al~~Id~aI~htPt~~e 229 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL----------------AQHYDYLGDYE--KALEYIDKAIEHTPTLVE 229 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHH----------------HHHHHHhCCHH--HHHHHHHHHHhcCCCcHH
Confidence 2333332222111000 001122222 24444433333 259999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
+|..+|.+|-..|++++|.+.++.|..+++.|-..-....-.++..|++++|......
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999888888888889999999999866543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.7e-09 Score=85.94 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+.+|..+...|++++|++.|+++++.+|+++++++.+|++++.+|++++|+..|++++++.|+.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999864
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-09 Score=113.12 Aligned_cols=186 Identities=12% Similarity=-0.027 Sum_probs=140.2
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cC
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YC 459 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~ 459 (714)
.-..|+-|+.+|.|+|||.+|.++|...| +-.+.+++.+|+++..+..|..+.+.||.++...-.+|..||. ++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999954 3346789999999999999999999999999999999988864 45
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHH-----------------------------------HHHHHHhcCCHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMY-----------------------------------RASSLMTKQNVEAALAEINR 504 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~-----------------------------------rg~~l~~l~r~~eAl~~~~k 504 (714)
..+||..|++.+++|.|+.-+.-.. +|+.+...|.++-|+.++-+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~ 259 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVS 259 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeec
Confidence 5699999999999999997433222 33333333444444444444
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHH
Q 005106 505 ILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIA 571 (714)
Q Consensus 505 AL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A 571 (714)
-++-+-+...+-.-+..+.+..++++|+.+..+++-++|.++. +.|++-+....+.+.+....++.+
T Consensus 260 ~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~ 327 (536)
T KOG4648|consen 260 PRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTA 327 (536)
T ss_pred cccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence 3332221111111145688899999999999999999999954 677888888888777777766666
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-06 Score=84.03 Aligned_cols=220 Identities=23% Similarity=0.154 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHh--c--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVN--A--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~--~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~ 458 (714)
.......+..+...+.+..+...+..++. . .....+...|......|++..+++.+.+++...+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 127 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----------- 127 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----------
Confidence 34556778888889999999999999875 2 33445556677777777766666666655554443
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC---C-HHHHHHHHHHHHhcCCHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRAS-SLMTKQNVEAALAEINRILGFKL---A-LECLELRFCFFLALEDYQAALC 533 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~-~l~~l~r~~eAl~~~~kAL~l~P---~-~~~~~~R~~~~~~lgd~e~Al~ 533 (714)
........+. ++...|++++|+..|.+++..+| . ...+..++..+...|++++|+.
T Consensus 128 -------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 128 -------------------PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred -------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 3333333333 45555555555555555554444 1 1222233334445555555555
Q ss_pred HHHHHHhhCCCc-hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHH
Q 005106 534 DVQAILTLSPDY-RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL 612 (714)
Q Consensus 534 d~~~al~L~P~~-~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~ 612 (714)
.+.+++...|+. .. .....+........++. +...+.+++...|.....+...+.
T Consensus 189 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T COG0457 189 LLEKALKLNPDDDAE------ALLNLGLLYLKLGKYEE------------------ALEYYEKALELDPDNAEALYNLAL 244 (291)
T ss_pred HHHHHHhhCcccchH------HHHHhhHHHHHcccHHH------------------HHHHHHHHHhhCcccHHHHhhHHH
Confidence 555555555552 10 11111111111111111 244555555555555555566666
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye 662 (714)
.+...|..++|...+++++..+|. +...|+.+... .+++...+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~ 288 (291)
T COG0457 245 LLLELGRYEEALEALEKALELDPD----LYNLGLALLLL--LAEALELLE 288 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc----hhhhhHHHHHH--HHHHHHHHh
Confidence 666666788888888888888887 66666666665 445444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-08 Score=107.20 Aligned_cols=274 Identities=15% Similarity=0.070 Sum_probs=170.1
Q ss_pred HHHHHHHHHhhhhHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHhc--------cchhhHhhHHHHHHHhCCHHHHHH
Q 005106 366 VCFLERLLESAETDRQRL-LAFHQLGCVRLLRKEYDEAEHLFEAAVNA--------GHIYSIAGLARLGYIKGHKLWAYE 436 (714)
Q Consensus 366 ~~LLe~Lv~~a~~~lq~~-~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--------~~~~a~~~lg~~~~~~G~~~~A~~ 436 (714)
+.+++.++....+.+... -.|.++|++|+-.++|++|.++..-=|.+ +.+-+-.++|+.+-..|.+++|+-
T Consensus 37 v~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~ 116 (639)
T KOG1130|consen 37 VDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALT 116 (639)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHH
Confidence 446666565555555443 34578999999999999999886543322 445566789999999999999976
Q ss_pred HHHHHHhc-------------CCCcHHHHHHHHhcC----------ChhHHHHHHHHHHhcCCCC-------------hH
Q 005106 437 KLNSVISS-------------VTPLGWMYQERSLYC----------EGDKRWEDLDKATALDPTL-------------SY 480 (714)
Q Consensus 437 ~~~~aI~~-------------~p~~~~ay~~rg~~~----------~~~eAl~d~~kAi~LdP~~-------------~~ 480 (714)
+..+-+.+ .-|+|.+|..+|+.. ..+++-.+|+.|++.--.+ -.
T Consensus 117 cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGR 196 (639)
T KOG1130|consen 117 CCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGR 196 (639)
T ss_pred HHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcc
Confidence 66555443 235566666655431 1255555666665443322 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--chhhhhh
Q 005106 481 PYMYRASSLMTKQNVEAALAEINRILGFKLAL-------ECLELRFCFFLALEDYQAALCDVQAILTLSPD--YRMFEGR 551 (714)
Q Consensus 481 ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-------~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~--~~~~~~~ 551 (714)
+|.|+|+.|.-+|+|++||..-+.=|++.-.+ .++.|.|.++.-+|+++.|++.|.+.+.|.-. +... .
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v--E 274 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV--E 274 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH--H
Confidence 78899999999999999999888777765431 24556778999999999999999987665322 1110 0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
..-.+-++......+.+++|-.+-+.. | -+-|-|+---+...++..+|+++-.+|..+.|+-...+++
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rH-----------L-aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRH-----------L-AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH-----------H-HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 111222233333344444441110000 0 1223333345667788889999999999999888877776
Q ss_pred HhCC----C--ChhHHHHHHHHHHhcCC
Q 005106 632 QHAA----S--DHERLVYEGWILYDTSH 653 (714)
Q Consensus 632 ~l~P----~--~~ea~~~~G~~ly~~G~ 653 (714)
++.- . .--+..|+...-..+|.
T Consensus 343 ~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 343 RSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 6532 2 22355566655555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-07 Score=93.05 Aligned_cols=187 Identities=16% Similarity=0.102 Sum_probs=155.2
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~ 551 (714)
.+.|+-...|-....+.+..|+.+-|...+++.-.--|+ +...-.-|..+..+|.|++|+..|+..++-||.+...+-|
T Consensus 46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR 125 (289)
T KOG3060|consen 46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR 125 (289)
T ss_pred ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH
Confidence 577777888888899999999999999999996654485 6777778899999999999999999999999998654433
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
.-+... .. . ....++.-++.=|+..|++.++|..++.++.-+|.++.|.=+|+..+
T Consensus 126 KlAilk-----a~-G------------------K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 126 KLAILK-----AQ-G------------------KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHH-----Hc-C------------------CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 222111 11 1 11224667788899999999999999999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC-CHHHHH---HHHHHhhc
Q 005106 632 QHAASDHERLVYEGWILYDTSH---CEEGLRKAEESIQMKR-SFEAFF---LKAYALAD 683 (714)
Q Consensus 632 ~l~P~~~ea~~~~G~~ly~~G~---~eeAl~~ye~Ai~i~~-~~~a~~---~~~~~~~~ 683 (714)
=++|.++--+--+|.++|.+|- ++-|...|++|+++.| ++-++| +.|.+++-
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 5678899999999999 666654 78888883
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.7e-07 Score=103.65 Aligned_cols=234 Identities=13% Similarity=0.023 Sum_probs=138.8
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~ 491 (714)
....+.+.++...|++++|++.+.+....-.+....+..||.+ |+.++|...|..-|+.||++...|..+..++--
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 3444556667777777777777766555555555555555432 444666666666666666666666666666522
Q ss_pred c-----CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhhCCCchhhhhhHHHHHHHHHHHHhh
Q 005106 492 K-----QNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA-ILTLSPDYRMFEGRVAASQLHMLVREHI 565 (714)
Q Consensus 492 l-----~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~-al~L~P~~~~~~~~~~a~~~~~~l~~~~ 565 (714)
. ...+.-++.|+..-+..|...+.......+..-.++...+..|-+ .+.- ++-.+-..+....
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-----------gvPslF~~lk~Ly 153 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-----------GVPSLFSNLKPLY 153 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-----------CCchHHHHHHHHH
Confidence 2 234444555555555555433221111111111223333332221 1111 0111122223333
Q ss_pred hhhhHHHHHHhhhhccccccccchHHHHHHHH------------HhCCCCh--hHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQML------------ESDAPKG--VLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL------------~l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
.+.+++++..++... +...+ +..|... .+++.+|-.+..+|++++|+..+++||
T Consensus 154 ~d~~K~~~i~~l~~~------------~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 154 KDPEKAAIIESLVEE------------YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred cChhHHHHHHHHHHH------------HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444333232222 22222 2233444 355888999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 632 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 632 ~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++.|...|.|...|-||-..|++++|....+.|-.+++..-
T Consensus 222 ~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 222 EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 99999999999999999999999999999999999998764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.3e-07 Score=99.39 Aligned_cols=131 Identities=20% Similarity=0.138 Sum_probs=84.4
Q ss_pred chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 005106 414 HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSL 489 (714)
Q Consensus 414 ~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l 489 (714)
-..+.++.+..++..|++++|...++..|...|++.|.+.-++.+ ++.++|++-+++|+.++|+....+.++|.+|
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 344566677777777777777777777777777666666666542 4456666666666666666666666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 490 MTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 490 ~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
+..|++.+|+..+++.+.-+|+ +..|..++.+|..+|+-.+|...+-....++-+
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 6666666666666666666664 666666666666666666665544444444333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.4e-08 Score=94.20 Aligned_cols=86 Identities=12% Similarity=-0.029 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHhcCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTL--SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~--~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
..+...+.+.++.++.. +..|++.|.++...|++++|+..|++|+.+.|+ +..+.+.|.++..+|++++|+..|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44455555555677776 667799999999999999999999999998765 246788999999999999999999
Q ss_pred HHHHhhCCCchh
Q 005106 536 QAILTLSPDYRM 547 (714)
Q Consensus 536 ~~al~L~P~~~~ 547 (714)
+++++++|.+..
T Consensus 96 ~~Al~~~~~~~~ 107 (168)
T CHL00033 96 FQALERNPFLPQ 107 (168)
T ss_pred HHHHHhCcCcHH
Confidence 999999999843
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.2e-08 Score=104.79 Aligned_cols=114 Identities=22% Similarity=0.208 Sum_probs=90.4
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 005106 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (714)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eA 498 (714)
...|+.+++.|++..|...|.+|+..-... ++.--...+... ++. ...|.|++.++..+++|.+|
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~------~~~~~ee~~~~~----~~k-----~~~~lNlA~c~lKl~~~~~A 276 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYR------RSFDEEEQKKAE----ALK-----LACHLNLAACYLKLKEYKEA 276 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhcc------ccCCHHHHHHHH----HHH-----HHHhhHHHHHHHhhhhHHHH
Confidence 346889999999999999999999863210 000000011111 111 24789999999999999999
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 499 LAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 499 l~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
+...+++|+++|+ ..+++-||.++..+|+|+.|+.||++|++++|+|..
T Consensus 277 i~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 277 IESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999995 899999999999999999999999999999999943
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-08 Score=81.81 Aligned_cols=83 Identities=24% Similarity=0.281 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|+++++..|++..++..+|.++...|++++|+..|++++...|. ...+...+.++...|++++|...++++++
T Consensus 17 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 17 DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 66777777888888888888889999999999999999999999998886 56777888899999999999999999998
Q ss_pred hCCC
Q 005106 541 LSPD 544 (714)
Q Consensus 541 L~P~ 544 (714)
++|+
T Consensus 97 ~~~~ 100 (100)
T cd00189 97 LDPN 100 (100)
T ss_pred cCCC
Confidence 8884
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.6e-07 Score=98.15 Aligned_cols=137 Identities=18% Similarity=0.107 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 591 (714)
+.+.+-++..+...|++++|+..++..+...|+|.. ...+.+.+.-...+..+| ..
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~------~~~~~~~i~~~~nk~~~A------------------~e 361 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY------YLELAGDILLEANKAKEA------------------IE 361 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCChHHH------------------HH
Confidence 444555555566666666666666666666665522 223333333333333333 45
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
-+++++.++|+.+.++.++|.+|.++|++.+|++.+++.+.-+|+|++.+.+++..+-.+|+..+|...+-+...+.-..
T Consensus 362 ~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 362 RLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 56666666666777888888888999999999999999998999888888888888888888888888888888776666
Q ss_pred H
Q 005106 672 E 672 (714)
Q Consensus 672 ~ 672 (714)
+
T Consensus 442 ~ 442 (484)
T COG4783 442 E 442 (484)
T ss_pred H
Confidence 6
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.7e-08 Score=102.82 Aligned_cols=206 Identities=16% Similarity=0.074 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc----c-c---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------c
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA----G-H---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------L 448 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~----~-~---~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~------~ 448 (714)
...|..-|..+-..|++++|...|.+|.+. + + ..++...+.++ ..+++.+|+..|++|+.++.. -
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 445566799999999999999999999766 1 1 22344445555 555999999999999998432 2
Q ss_pred HHHHHHHHhc-----CChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----H
Q 005106 449 GWMYQERSLY-----CEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-----L 512 (714)
Q Consensus 449 ~~ay~~rg~~-----~~~~eAl~d~~kAi~LdP~~------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-----~ 512 (714)
+..+.+.|.+ +++++|++.|.+|+++--.. ...+.+.|.++.++|+|++|+..|++++....+ +
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 4455555532 35599999999999983322 356778999999999999999999999975321 2
Q ss_pred --HHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-
Q 005106 513 --ECLE-LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG- 588 (714)
Q Consensus 513 --~~~~-~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~- 588 (714)
..++ ..+.+++.+||+..|...+++....+|.+....-...+..+....+ . .+.+.+.
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-----------------~-~D~e~f~~ 255 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-----------------E-GDVEAFTE 255 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-----------------T-T-CCCHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-----------------h-CCHHHHHH
Confidence 1233 3456899999999999999999999999854322222222222111 1 1112222
Q ss_pred hHHHHHHHHHhCCCChhHH
Q 005106 589 SLSVIYQMLESDAPKGVLY 607 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~ 607 (714)
++..|++.-.+|||....+
T Consensus 256 av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 256 AVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HCHHHTTSS---HHHHHHH
T ss_pred HHHHHcccCccHHHHHHHH
Confidence 4667777788887766544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.2e-06 Score=89.04 Aligned_cols=261 Identities=17% Similarity=0.128 Sum_probs=176.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcH-------HHHHHHHhcCChhHHHHHHHHHHhcCCCC-hHHHHHHHHHHHhcC
Q 005106 422 ARLGYIKGHKLWAYEKLNSVISSVTPLG-------WMYQERSLYCEGDKRWEDLDKATALDPTL-SYPYMYRASSLMTKQ 493 (714)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~p~~~-------~ay~~rg~~~~~~eAl~d~~kAi~LdP~~-~~ay~~rg~~l~~l~ 493 (714)
|......|++.+|.+...++-+-.+.-. .|-++||++ +.|=..+.+|.++.|+. ...+..|+-++...|
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~---~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDE---DRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccH---HHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 4456677999999999988777655433 333445444 88888999999995544 357888999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC-chhhhhhHHHHHHHHHHHHhhhhh
Q 005106 494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLS---PD-YRMFEGRVAASQLHMLVREHIDNW 568 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~---P~-~~~~~~~~~a~~~~~~l~~~~~~~ 568 (714)
+++.|......+++..|. +........+|...|+|.+..+-..+.-+-. +. +..+.. .+ ..+.++.....-
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~-~a---~~glL~q~~~~~ 243 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ-QA---WEGLLQQARDDN 243 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH-HH---HHHHHHHHhccc
Confidence 999999999999999996 7877778889999999999998877766633 22 111111 11 111111111111
Q ss_pred hHH---HHHHhhhhcccc--------------ccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005106 569 TIA---DCWLQLYDRWSS--------------VDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (714)
Q Consensus 569 ~~A---~~~~~l~~~~~~--------------~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 630 (714)
... ++|.++-.+... .++.. |...+.++|...= ++.++-. .--.+.++++.=+...++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-D~~L~~~--~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW-DPRLCRL--IPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-ChhHHHH--HhhcCCCCchHHHHHHHHH
Confidence 111 123222222221 12222 4445555554421 1222111 1123356666667777788
Q ss_pred HHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhh
Q 005106 631 RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 693 (714)
Q Consensus 631 l~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~ 693 (714)
+...|+++..+.++|-.+++.+.+.+|=..+|.|++.+||-+.|...|++++-.. ||+-+.-
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g-~~~~A~~ 382 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG-EPEEAEQ 382 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC-ChHHHHH
Confidence 8889999999999999999999999999999999999999999999999987554 4444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.5e-07 Score=90.97 Aligned_cols=210 Identities=15% Similarity=0.076 Sum_probs=143.9
Q ss_pred HHHhhhcCCCCchhHHHHHHHHHHhhhhH-H--HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHH
Q 005106 351 LSEVAMNLDPRSDKTVCFLERLLESAETD-R--QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI 427 (714)
Q Consensus 351 l~~V~~d~~~rs~~~~~LLe~Lv~~a~~~-l--q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~ 427 (714)
-.|-.. ...+++..+++.++...-.... + .....+.+.-.+.+.+|+.+-|..++++.-..-|. ++. .++ .
T Consensus 18 ~~wr~~-~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~R-V~~---l 91 (289)
T KOG3060|consen 18 RKWREE-TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKR-VGK---L 91 (289)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-Chh-HHH---H
Confidence 356333 3346777777776633211111 0 11234456677777888888888888774332221 111 111 1
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 428 KGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG 507 (714)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~ 507 (714)
.| .-+...|.+ ++|++.|+..++-||++.-+|...-.++..+|+.-+||..++.-+.
T Consensus 92 ka--------------------m~lEa~~~~---~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 92 KA--------------------MLLEATGNY---KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred HH--------------------HHHHHhhch---hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11 112223334 8888888999999999999999999999999999999999999998
Q ss_pred cCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH-HHHHHHHHHHhhhhhhHHHHHHhhhhcccccc
Q 005106 508 FKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA-ASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585 (714)
Q Consensus 508 l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~-a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~ 585 (714)
.=| +.++|...+.+|..+|+|++|.-+|+..+-++|-++++++|.+ ..+-.+. +++.+.|
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg----~eN~~~a-------------- 210 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG----AENLELA-------------- 210 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh----HHHHHHH--------------
Confidence 777 5999999999999999999999999999999999988877654 2222221 2333333
Q ss_pred ccchHHHHHHHHHhCCCChhHHHHHH
Q 005106 586 DIGSLSVIYQMLESDAPKGVLYFRQS 611 (714)
Q Consensus 586 d~~al~~~~qaL~l~P~~~~~~~~~g 611 (714)
...|.|+|.++|.+.+++|..-
T Consensus 211 ----rkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 211 ----RKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred ----HHHHHHHHHhChHhHHHHHHHH
Confidence 6689999999998888876543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.7e-07 Score=102.72 Aligned_cols=175 Identities=13% Similarity=0.086 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHh--c--C
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQERSL--Y--C 459 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p-~~~~ay~~rg~--~--~ 459 (714)
.+.+.-.+|...|+..+|.....+-|+ +++++ +.|..+||...--..|++|.++.. .++.|....|. + .
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~-----~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE-KDPDP-----RLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcc-----hhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccch
Confidence 344566678888888899888888788 44433 446777888877888888888743 34443333221 1 2
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
.+.++..+|+.+++++|-....|+++|.+..++++++.|..+|.+.+.++|+ ..+|+|...+|..+|+..+|-+.+..|
T Consensus 500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 4499999999999999999999999999999999999999999999999997 899999999999999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (714)
++-+=++. ....+-+++...+..|++|
T Consensus 580 lKcn~~~w------~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 580 LKCNYQHW------QIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred hhcCCCCC------eeeechhhhhhhcccHHHH
Confidence 99984441 1233334455566667777
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.7e-08 Score=94.49 Aligned_cols=101 Identities=25% Similarity=0.305 Sum_probs=82.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~ 500 (714)
-|+-++..|++.+|...|..||++-|.... -.| .-.|.|||.+++.+++.+.||.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~r-----------------------sIly~Nraaa~iKl~k~e~aI~ 155 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTST--EER-----------------------SILYSNRAAALIKLRKWESAIE 155 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccH--HHH-----------------------HHHHhhhHHHHHHhhhHHHHHH
Confidence 355677778888887777777777765544 222 1258899999999999999999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 501 EINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 501 ~~~kAL~l~P~~-~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
+..|||+++|.+ .++..|+.+|..+..|++|+.||.++++++|...
T Consensus 156 dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 156 DCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 999999999974 5566679999999999999999999999999873
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-06 Score=97.79 Aligned_cols=212 Identities=17% Similarity=0.086 Sum_probs=140.3
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH----hcCChhHHHHHHHHHHhcCCC----ChHHHHHHHHHHHhcCCHHH
Q 005106 426 YIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALDPT----LSYPYMYRASSLMTKQNVEA 497 (714)
Q Consensus 426 ~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg----~~~~~~eAl~d~~kAi~LdP~----~~~ay~~rg~~l~~l~r~~e 497 (714)
...|++++|....++.+..+|+...++.-.= +..++++|+ +.|+.++. +... +.+|.+..++|+.++
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~AL----k~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDAL----KLIKKNGALLVINSFF-FEKAYCEYRLNKLDE 97 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHH----HHHHhcchhhhcchhh-HHHHHHHHHcccHHH
Confidence 3445555555555555555555554443221 111224444 33333332 2211 578889999999999
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHh
Q 005106 498 ALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQ 576 (714)
Q Consensus 498 Al~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~ 576 (714)
|+.+++ .+++. ....+.++.++.++|+|++|+.-|+..++=+-+......+.........
T Consensus 98 alk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~---------------- 158 (652)
T KOG2376|consen 98 ALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA---------------- 158 (652)
T ss_pred HHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----------------
Confidence 999999 55775 4578999999999999999999999998877665332222221111100
Q ss_pred hhhccccccccchHH-HHHHHHHhCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCC--------hh
Q 005106 577 LYDRWSSVDDIGSLS-VIYQMLESDAP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-------AASD--------HE 639 (714)
Q Consensus 577 l~~~~~~~~d~~al~-~~~qaL~l~P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-------~P~~--------~e 639 (714)
+. ...+..-.-|. +-+.+||.+-++...|.+.+|++.+++|+++ .-.+ .-
T Consensus 159 -------------l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 159 -------------LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred -------------hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 00 01222233333 4568999999999999999999999999432 1111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 640 a~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
....++.+|..+|+-+||.+.|..-|+.+|-.+.+
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence 56788999999999999999999999998877643
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-08 Score=109.21 Aligned_cols=73 Identities=19% Similarity=0.132 Sum_probs=65.4
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH---HHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCc
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE---CLELRFCFFLALEDYQAALCDVQAILTL-SPDY 545 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~---~~~~R~~~~~~lgd~e~Al~d~~~al~L-~P~~ 545 (714)
+-+|+++.+|+|+|.+|..+|+|++|++.|++||+++|+ .+ +|+|+|.+|..+|++++|+.++++|+++ +|.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 368999999999999999999999999999999999997 43 4899999999999999999999999998 5544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.7e-08 Score=79.45 Aligned_cols=63 Identities=22% Similarity=0.210 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
+.+|.++++.|++++|+..|+++++.+|+ +++++.+|.++..+|++++|+..|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 46788899999999999999999999996 7888889999999999999999999999999986
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-07 Score=78.12 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
|+..++++++..|.+..+++.+|.++...|++++|+..++++++..|.+.+++...|.++...|++++|...+++++.+.
T Consensus 19 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 005106 669 RS 670 (714)
Q Consensus 669 ~~ 670 (714)
|+
T Consensus 99 ~~ 100 (100)
T cd00189 99 PN 100 (100)
T ss_pred CC
Confidence 74
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-06 Score=88.46 Aligned_cols=179 Identities=13% Similarity=0.067 Sum_probs=121.3
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 005106 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (714)
Q Consensus 415 ~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r 494 (714)
+..++..|.-....|++++|++.|++++..+|..+.+.. +...+|.++.++++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~---------------------------a~l~la~ayy~~~~ 84 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQ---------------------------VQLDLIYAYYKNAD 84 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH---------------------------HHHHHHHHHHhcCC
Confidence 333444555566666666666666555555554332221 23788999999999
Q ss_pred HHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCC------------------HHHHHHHHHHHHhhCCCchhhhhhH
Q 005106 495 VEAALAEINRILGFKLA----LECLELRFCFFLALED------------------YQAALCDVQAILTLSPDYRMFEGRV 552 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd------------------~e~Al~d~~~al~L~P~~~~~~~~~ 552 (714)
+++|+..|++.|++.|+ +.+++.+|.++..+++ ..+|+..|++.++.-|+...+ .
T Consensus 85 y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya---~ 161 (243)
T PRK10866 85 LPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT---T 161 (243)
T ss_pred HHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH---H
Confidence 99999999999999885 4556778877655541 357889999999999986321 1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005106 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (714)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (714)
.+......++..+.. --+..|..+.+.|.+..|+.-++..++
T Consensus 162 ~A~~rl~~l~~~la~--------------------------------------~e~~ia~~Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 162 DATKRLVFLKDRLAK--------------------------------------YELSVAEYYTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred HHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 111211111111111 123456677888999999999999999
Q ss_pred hCCC---ChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 633 HAAS---DHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 633 l~P~---~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
.-|+ ..+|++.++.++..+|.-++|-+..
T Consensus 204 ~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 204 DYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 8886 5688999999999999999987543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=87.36 Aligned_cols=186 Identities=15% Similarity=0.091 Sum_probs=112.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~ 496 (714)
+|..|-..|=..-|.-+|++++.++|+.+.++.-.|.| +.++.|++.|+..++|||++-.+..|||.++.--||+.
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 34444444444444455555555555555555555443 34466777788899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHH-HHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 005106 497 AALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV-QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (714)
Q Consensus 497 eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~-~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~ 574 (714)
-|..+|.+--+-||+ |.- ...-.+-...-|..+|.... +++-.++-++ .|-...-..++.+..
T Consensus 151 LAq~d~~~fYQ~D~~DPfR-~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~---WG~~iV~~yLgkiS~----------- 215 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFR-SLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQ---WGWNIVEFYLGKISE----------- 215 (297)
T ss_pred hhHHHHHHHHhcCCCChHH-HHHHHHHHhhCCHHHHHHHHHHHHHhccHhh---hhHHHHHHHHhhccH-----------
Confidence 999999999998985 431 11112222333555555443 3444444332 111111111111100
Q ss_pred HhhhhccccccccchHHHHHHHHHhCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005106 575 LQLYDRWSSVDDIGSLSVIYQMLESDAP-------KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (714)
Q Consensus 575 ~~l~~~~~~~~d~~al~~~~qaL~l~P~-------~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (714)
-+.+.++.+-.-+ -.++||.+|.-...+|...+|...|..|+..+--
T Consensus 216 ---------------e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 216 ---------------ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred ---------------HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 0122222222222 2467999999999999999999999999987643
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=92.71 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-L-----ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~-----~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
...=|+-+..-|.|++|...|..||++-|. + -+|.|||.++.+++.++.||.++.+||+|+|.|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty---------- 167 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY---------- 167 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh----------
Confidence 345688888899999999999999999885 2 356789999999999999999999999999997
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
++||+ +|+.++.++-.+++|+.+|.+.++++|
T Consensus 168 --------------------------------------~kAl~----------RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 168 --------------------------------------EKALE----------RRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred --------------------------------------HHHHH----------HHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 23333 577888888888888888888888888
Q ss_pred CChhHH
Q 005106 636 SDHERL 641 (714)
Q Consensus 636 ~~~ea~ 641 (714)
...+|.
T Consensus 200 s~~ear 205 (271)
T KOG4234|consen 200 SRREAR 205 (271)
T ss_pred chHHHH
Confidence 887664
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-06 Score=91.28 Aligned_cols=211 Identities=18% Similarity=0.125 Sum_probs=142.0
Q ss_pred cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 005106 397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP 476 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP 476 (714)
.+|++|...|++| |+.+...|++++|.+.|.++...+-..+.- ..|-
T Consensus 29 ~~~e~Aa~~y~~A------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~----------~~Aa----------- 75 (282)
T PF14938_consen 29 PDYEEAADLYEKA------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDK----------FEAA----------- 75 (282)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-H----------HHHH-----------
T ss_pred CCHHHHHHHHHHH------------HHHHHHHhccchhHHHHHHHHHHHHHcCCH----------HHHH-----------
Confidence 3788888888886 455778888888888888777665221111 2222
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCchhh
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA--LECLELRFCFFLAL-EDYQAALCDVQAILTLSPDYRMF 548 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-----~P~--~~~~~~R~~~~~~l-gd~e~Al~d~~~al~L~P~~~~~ 548 (714)
.+|.+-|.++.+. ++++|+..|++|+.+ +|. ..++...|.+|... |++++|+..|++|+++--....
T Consensus 76 ---~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~- 150 (282)
T PF14938_consen 76 ---KAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS- 150 (282)
T ss_dssp ---HHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred ---HHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-
Confidence 3444555566555 888888888888876 122 23445567888888 9999999999999986221100
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 628 (714)
...+ ...+.+.|.++.++|++++|+..|+
T Consensus 151 -------------------~~~a--------------------------------~~~~~~~A~l~~~l~~y~~A~~~~e 179 (282)
T PF14938_consen 151 -------------------PHSA--------------------------------AECLLKAADLYARLGRYEEAIEIYE 179 (282)
T ss_dssp -------------------HHHH--------------------------------HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred -------------------hhhH--------------------------------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 0000 1234567788999999999999999
Q ss_pred HHHHhCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHhhccCCCCCchhhHHH
Q 005106 629 LARQHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----EAFFLKAYALADSSQDSSCSSTVVS 696 (714)
Q Consensus 629 ~Al~l~P~~-------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~----~a~~~~~~~~~~~~~~~~~~~~~~~ 696 (714)
+.....-++ .+.+..-+.|.+.+|+.-.|...+++...++|+| |.-|+.+..-|=.+-|++.-+.+|.
T Consensus 180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 998754322 2445678899999999999999999999999866 4667777776666667776665543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-07 Score=97.96 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCh
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~ 461 (714)
+.-....|+.+++.|+|..|...|++|+.. ++.... +.++.-..-.--+..+-|++..|.....|
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-----------~~ee~~~~~~~k~~~~lNlA~c~lKl~~~--- 273 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-----------DEEEQKKAEALKLACHLNLAACYLKLKEY--- 273 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC-----------CHHHHHHHHHHHHHHhhHHHHHHHhhhhH---
Confidence 444567899999999999999999999876 322110 01111111111233466788888888666
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHhcCCHHHH-HHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLE-LRFCFFLALEDYQAA-LCDVQAIL 539 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~-~R~~~~~~lgd~e~A-l~d~~~al 539 (714)
.+|+...+++++++|+|.-|.+.||.++..+|.|+.|+.+|+||++++|+..+.. -...+..+..++++. -.-|.+.+
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999744333 344444444445444 45566666
Q ss_pred hhCCC
Q 005106 540 TLSPD 544 (714)
Q Consensus 540 ~L~P~ 544 (714)
..-+.
T Consensus 354 ~k~~~ 358 (397)
T KOG0543|consen 354 AKLAE 358 (397)
T ss_pred hcccc
Confidence 55443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=84.11 Aligned_cols=79 Identities=27% Similarity=0.231 Sum_probs=61.8
Q ss_pred ChhHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~---~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
++++|+..|+++++-.|+. ..+..++|.+++.+|++++|+..++.+- -.+ .+..+..+|.++..+|++++|+..|
T Consensus 63 ~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 63 DYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3366666666666666554 3577889999999999999999997733 222 3566778999999999999999999
Q ss_pred HHHH
Q 005106 536 QAIL 539 (714)
Q Consensus 536 ~~al 539 (714)
++|+
T Consensus 142 ~~Al 145 (145)
T PF09976_consen 142 QKAL 145 (145)
T ss_pred HHhC
Confidence 9985
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=81.74 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 589 SLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (714)
Q Consensus 589 al~~~~qaL~l~P~--~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~A 664 (714)
|+..++++++.+|. +...++++|.++.++|++++|+..+++ ..++|.+.+.++..|.+++.+|+++||+..+++|
T Consensus 8 Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 8 AIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 48899999999995 577899999999999999999999999 9999999999999999999999999999999986
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=92.23 Aligned_cols=107 Identities=8% Similarity=-0.028 Sum_probs=79.7
Q ss_pred hHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 479 SYPYMYRASSL-MTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 479 ~~ay~~rg~~l-~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
...+++.|..+ +..|+|++|+..|++.|+..|+ +.+++.+|.+|...|++++|+..|+++++..|++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s-------- 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS-------- 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence 45566666655 5567888888888888888885 3566777888888888888888888888888875
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
|..+++++.+|.++..+|+.++|...|++.++.
T Consensus 214 -----------------------------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 214 -----------------------------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred -----------------------------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444566777777777788888888888888888
Q ss_pred CCCChhH
Q 005106 634 AASDHER 640 (714)
Q Consensus 634 ~P~~~ea 640 (714)
.|++..+
T Consensus 247 yP~s~~a 253 (263)
T PRK10803 247 YPGTDGA 253 (263)
T ss_pred CcCCHHH
Confidence 8777654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-07 Score=80.53 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=69.3
Q ss_pred CChhHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPT--LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~--~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
+.+++|+..|+++++.+|+ +...++++|.++.++|++++|+..+++ ++.+|. +...+..|.++.++|++++|+..|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3459999999999999996 466788899999999999999999999 888886 577788899999999999999999
Q ss_pred HHH
Q 005106 536 QAI 538 (714)
Q Consensus 536 ~~a 538 (714)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=81.52 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 005106 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (714)
Q Consensus 513 ~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 592 (714)
.+++.+++++..+|+.++|+..|+++++..++..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---------------------------------------------- 35 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA---------------------------------------------- 35 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch----------------------------------------------
Confidence 4567788888888888888888888888765531
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.-..+++.+|.++..+|++++|+..++++++-.|+ +......++.+|+..|+.+||++.+-+++.
T Consensus 36 ---------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 36 ---------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01234566777888888888888888888887777 777777788888888888888887777765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.2e-06 Score=85.53 Aligned_cols=152 Identities=14% Similarity=0.045 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQE 454 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~---~~~ay~~ 454 (714)
....+..|......|+|++|+..|++.+...| ..+...+|.++++.|++++|+..+++.|+.+|+ .+.+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 45577889999999999999999999998844 224567899999999999999999999999875 5778888
Q ss_pred HHhcC-------------------C---hhHHHHHHHHHHhcCCCChH-----------------HHHHHHHHHHhcCCH
Q 005106 455 RSLYC-------------------E---GDKRWEDLDKATALDPTLSY-----------------PYMYRASSLMTKQNV 495 (714)
Q Consensus 455 rg~~~-------------------~---~~eAl~d~~kAi~LdP~~~~-----------------ay~~rg~~l~~l~r~ 495 (714)
+|... + ..+|+..|++.|+.-|+... --+..|.-|.+.|++
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 87531 0 14678889999999998742 223445556666666
Q ss_pred HHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 496 EAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 496 ~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
..|+.-++.+|+--|+ .++++.....|..+|..++|...
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6677777777666663 34445555666666666666543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-05 Score=80.26 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCCHHHH
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEG 657 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~---ea~~~~G~~ly~~G~~eeA 657 (714)
+..|..+.+.|.+.+|+.-++.+++.-|+.. +|+..++..++.+|..+.|
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3467778888999999999999999999854 6788888999999988844
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-06 Score=90.04 Aligned_cols=124 Identities=12% Similarity=0.001 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++-+.-++.-+.-||+++.-|.-+|-+|+.+|+++.|...|.+|+++.|+ ++.+-..+.++....
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a-------------- 204 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA-------------- 204 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------------
Confidence 56667778888888888888888888888888888888888888888774 665544333221110
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
++.. ...+-..++++|.+||.++.+.+.+|..+...|++
T Consensus 205 -~~~~----------------------------------------ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~ 243 (287)
T COG4235 205 -GQQM----------------------------------------TAKARALLRQALALDPANIRALSLLAFAAFEQGDY 243 (287)
T ss_pred -CCcc----------------------------------------cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 1111 11123356777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCChhH
Q 005106 621 EAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea 640 (714)
++|....+.-+.+.|.+...
T Consensus 244 ~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 244 AEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHHhcCCCCCch
Confidence 77777777777777766543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.6e-07 Score=75.06 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=60.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
..++.+.+++++|+..+++++.++|+++..+..+|.+++.+|++++|+..+++++++.|+.. +-.+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999877 555554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.47 E-value=4e-06 Score=80.14 Aligned_cols=119 Identities=16% Similarity=0.078 Sum_probs=92.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 005106 491 TKQNVEAALAEINRILGFKLAL----ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (714)
Q Consensus 491 ~l~r~~eAl~~~~kAL~l~P~~----~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (714)
..++...+...+++.+.-.|+. .+...++.++...|++++|+..|++++.-.|+...
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l------------------- 83 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL------------------- 83 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-------------------
Confidence 5778888888888888888852 22344677888889999999999998887766411
Q ss_pred hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005106 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (714)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 646 (714)
.+.+++++|.++..+|++++|+..++. +.-.+-.+.++..+|.
T Consensus 84 ------------------------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 84 ------------------------------------KPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred ------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 123566788888899999999999866 4555667788888999
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 005106 647 ILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 647 ~ly~~G~~eeAl~~ye~Ai 665 (714)
++...|++++|.+.|++||
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999885
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-05 Score=81.02 Aligned_cols=148 Identities=19% Similarity=0.121 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHH
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQ 453 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~---~~~ay~ 453 (714)
...+++..|...++.|+|.+|+..|++.+..-| ..+...+|.+++..|++..|+..+++.|..+|+ .+.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 356788999999999999999999999988732 446778999999999999999999999999886 456777
Q ss_pred HHHhcC---------------ChhHHHHHHHHHHhcCCCChHH-----------------HHHHHHHHHhcCCHHHHHHH
Q 005106 454 ERSLYC---------------EGDKRWEDLDKATALDPTLSYP-----------------YMYRASSLMTKQNVEAALAE 501 (714)
Q Consensus 454 ~rg~~~---------------~~~eAl~d~~kAi~LdP~~~~a-----------------y~~rg~~l~~l~r~~eAl~~ 501 (714)
.+|... ...+|+..|++.|+.-|+...+ -+..|..|.+.|++..|+.-
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 776421 0146778888888888887533 23456667777777777777
Q ss_pred HHHHHhcCCCH----HHHHHHHHHHHhcCCHH
Q 005106 502 INRILGFKLAL----ECLELRFCFFLALEDYQ 529 (714)
Q Consensus 502 ~~kAL~l~P~~----~~~~~R~~~~~~lgd~e 529 (714)
++.+|+--|+. +++......|..+|..+
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 77777766652 33344555666777666
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.9e-06 Score=89.39 Aligned_cols=107 Identities=9% Similarity=-0.010 Sum_probs=92.2
Q ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 511 ALECLELRFCF-FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 511 ~~~~~~~R~~~-~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
+...++..+.. ....|+|++|+..|++.++..|+..
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~------------------------------------------- 177 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST------------------------------------------- 177 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-------------------------------------------
Confidence 34555666654 3667999999999999999999862
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
-.+.+++.+|.++...|++++|+..|++++...|+ .+++++.+|.++..+|++++|...|++.++
T Consensus 178 ------------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 178 ------------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred ------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11356788999999999999999999999999887 699999999999999999999999999999
Q ss_pred cCCCHH
Q 005106 667 MKRSFE 672 (714)
Q Consensus 667 i~~~~~ 672 (714)
.-|+.+
T Consensus 246 ~yP~s~ 251 (263)
T PRK10803 246 KYPGTD 251 (263)
T ss_pred HCcCCH
Confidence 999987
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.1e-07 Score=74.47 Aligned_cols=50 Identities=28% Similarity=0.391 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
++|+..++++++++|+++.+|..+|.++..+|++++|+.+|+++++..|+
T Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 12 EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 55555555555555555555555555555555555555555555555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.43 E-value=5e-06 Score=77.26 Aligned_cols=99 Identities=22% Similarity=0.123 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
+.+.+++|.++..+|+.++|+..|++|++..++ ..++..+|..+..+|++++|+.-+++++.-.|+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~--------- 71 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD--------- 71 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------
Confidence 357889999999999999999999999997654 3456678889999999999999999998887874
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005106 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (714)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (714)
+.+..+....+.+|..+|+++||++.+-.++.
T Consensus 72 ----------------------------------------------~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ----------------------------------------------ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----------------------------------------------cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12333445577889999999999999888775
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.5e-07 Score=88.69 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC---
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALED--- 527 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r----------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd--- 527 (714)
+.|.+.++.+...||.+++++++.|.+|.++.+ +++|+.-|+.||.++|+ .+++++.|.+|..++.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 566777777777777777777777777777633 35667777777777776 5666677766554443
Q ss_pred --------HHHHHHHHHHHHhhCCCchh
Q 005106 528 --------YQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 528 --------~e~Al~d~~~al~L~P~~~~ 547 (714)
|++|...|++|...+|++..
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 78888899999999999854
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.9e-07 Score=73.45 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=59.1
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 614 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
|...|++++|++.|++++..+|++.++.+.+|.+++.+|++++|.+.+++++..+|+.. .+.++|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999976 555554
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.1e-07 Score=86.56 Aligned_cols=93 Identities=14% Similarity=0.073 Sum_probs=75.2
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC------
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRL----------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH------ 653 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~l----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~------ 653 (714)
...++.....+|.+++.++|-|.+|+.| ..+++|+.-|+.||.++|+.++|++++|.++..+|.
T Consensus 11 rk~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~ 90 (186)
T PF06552_consen 11 RKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTA 90 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChH
Confidence 5567888999999999999999999986 445789999999999999999999999999998865
Q ss_pred -----HHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 654 -----CEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 654 -----~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
|++|...|++|..++|+++.|. |+.-+++
T Consensus 91 ~A~~~F~kA~~~FqkAv~~~P~ne~Y~-ksLe~~~ 124 (186)
T PF06552_consen 91 EAEEYFEKATEYFQKAVDEDPNNELYR-KSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-HHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHH
Confidence 9999999999999999999875 4444443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3e-06 Score=89.00 Aligned_cols=113 Identities=16% Similarity=0.059 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 005106 434 AYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRIL 506 (714)
Q Consensus 434 A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~---r~~eAl~~~~kAL 506 (714)
-+...+..+..+|+++.-|..+|.+ ++...|...|.+|++|.|+++..+...|.+++... .-.+|...|++||
T Consensus 141 l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 141 LIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 3444455555666655544444432 34466666667777777777777777666666543 2446666677777
Q ss_pred hcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 507 GFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 507 ~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
++||+ ..+.+.++..+.+.|||.+|+..+++.+.+.|.+.
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77774 66666666666777777777777777777666653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00042 Score=73.98 Aligned_cols=279 Identities=12% Similarity=0.056 Sum_probs=178.2
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHh--------------c------
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVIS--------------S------ 444 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~--------------~------ 444 (714)
-.+|.+++..|+|++|...|+.+.+.+ +...+.+++.+++-+|.+.+|-....++-. +
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 356778899999999999999988774 444577889999999999999666543321 1
Q ss_pred -------------CCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 445 -------------VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 445 -------------~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
.-.++.+++.|..| ++||..|.+.+.-+|+....-.++|.+|..+.-|+-+-..+.--|..-|+
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HY---QeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHY---QEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHH---HHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 12467777888777 99999999999999999999999999999999998777777666666665
Q ss_pred -HHHHHHHHH------------------------------------------------------------------HHHh
Q 005106 512 -LECLELRFC------------------------------------------------------------------FFLA 524 (714)
Q Consensus 512 -~~~~~~R~~------------------------------------------------------------------~~~~ 524 (714)
+.+.+..+. -|+.
T Consensus 218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~ 297 (557)
T KOG3785|consen 218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN 297 (557)
T ss_pred cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc
Confidence 322222221 1667
Q ss_pred cCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc-cc----------------
Q 005106 525 LEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV-DD---------------- 586 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~-~d---------------- 586 (714)
++|..+|+.... .++|.-+. |..++-.....|.--.-.+....|+-..++--.-... |.
T Consensus 298 q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 298 QNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQ 374 (557)
T ss_pred cccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH
Confidence 777777766543 56776532 3333322222221111222223333222221111110 11
Q ss_pred cc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH---HHHHHHHhcCCHHHHHHHHH
Q 005106 587 IG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV---YEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 587 ~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~---~~G~~ly~~G~~eeAl~~ye 662 (714)
++ -+..++-.-+-.-++.+..+|.+-+...-|.+.||.+.+-+.-.-+ --+-+. .++-|+...|+-+-||..+
T Consensus 375 FddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~--ikn~~~Y~s~LArCyi~nkkP~lAW~~~- 451 (557)
T KOG3785|consen 375 FDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE--IKNKILYKSMLARCYIRNKKPQLAWDMM- 451 (557)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh--hhhhHHHHHHHHHHHHhcCCchHHHHHH-
Confidence 11 1333343444567888889999999999999999999876654333 222333 3556788889999998776
Q ss_pred HHHhcCCCHHHHHH
Q 005106 663 ESIQMKRSFEAFFL 676 (714)
Q Consensus 663 ~Ai~i~~~~~a~~~ 676 (714)
+..+-+-++|-|
T Consensus 452 --lk~~t~~e~fsL 463 (557)
T KOG3785|consen 452 --LKTNTPSERFSL 463 (557)
T ss_pred --HhcCCchhHHHH
Confidence 344555555543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00068 Score=76.63 Aligned_cols=284 Identities=11% Similarity=-0.002 Sum_probs=178.4
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE 466 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~ 466 (714)
+..+.+..+.++.++|+..++ -++..+.......|.+.+++|+|++|+.-|...++-+.+.-..-...+.. ....+..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~-a~~a~l~ 160 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL-AVAAALQ 160 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHhhh
Confidence 567778889999999999998 33444455667788999999999999999998888776554444333222 0111221
Q ss_pred -HHHHHHhcCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCHH--------HHHHHHHHHHhcCCH
Q 005106 467 -DLDKATALDPT-LSYPYMYRASSLMTKQNVEAALAEINRILGF--------KLALE--------CLELRFCFFLALEDY 528 (714)
Q Consensus 467 -d~~kAi~LdP~-~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l--------~P~~~--------~~~~R~~~~~~lgd~ 528 (714)
+..+.+-..|+ ..+-++|+|.++...|+|.+|+..+.+|+.+ +-+-+ +..-.++++..+|+-
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 25667777777 6688999999999999999999999999432 11111 122356899999999
Q ss_pred HHHHHHHHHHHhhCCCchhh----hhhHHHHHH-------HHHHHHhhhhhhHHHHHHhhhhcccc--ccccc-------
Q 005106 529 QAALCDVQAILTLSPDYRMF----EGRVAASQL-------HMLVREHIDNWTIADCWLQLYDRWSS--VDDIG------- 588 (714)
Q Consensus 529 e~Al~d~~~al~L~P~~~~~----~~~~~a~~~-------~~~l~~~~~~~~~A~~~~~l~~~~~~--~~d~~------- 588 (714)
++|..-|...+..+|-+..+ .++..+..- -.+..........++.|.+-...-+. .-+..
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999977531 111110000 00000011111111112111111000 00000
Q ss_pred -hHHHHHHHHHhCCC-ChhHHH---HHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 589 -SLSVIYQMLESDAP-KGVLYF---RQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 589 -al~~~~qaL~l~P~-~~~~~~---~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~ly~~G~~eeAl~~ye 662 (714)
.-...++-...-|. .+...+ .+...+.+-..+..|...+..-.+-.|.+ .....-+..+...+|+++.|+..++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 01122333333333 333322 23444444557888999999999999987 7788889999999999999999999
Q ss_pred --------HHHhcCCCHH
Q 005106 663 --------ESIQMKRSFE 672 (714)
Q Consensus 663 --------~Ai~i~~~~~ 672 (714)
...+++.+.+
T Consensus 401 ~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHhhhhhhhhhhhccChh
Confidence 5555555544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-05 Score=86.20 Aligned_cols=158 Identities=12% Similarity=0.006 Sum_probs=124.7
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHH--HHhc
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQE--RSLY 458 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~-----~~~ay~~--rg~~ 458 (714)
....|.++...|++++|++.+.+. +......-.-.++...|+++.|.+.+.++-+.+.+ ++.+|.+ .|.
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~- 180 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG- 180 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc-
Confidence 345678888899999998877664 34444454556899999999999999888777664 4555555 443
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCH-HHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDY-QAALCDVQ 536 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~-e~Al~d~~ 536 (714)
..+.+|.-.|+...+..|..+..++..|.+.+.+|+++||...+..|++.+|+ ++.+.|+..+...+|+. +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 34599999999988888899999999999999999999999999999999997 89899999999999988 66778888
Q ss_pred HHHhhCCCchh
Q 005106 537 AILTLSPDYRM 547 (714)
Q Consensus 537 ~al~L~P~~~~ 547 (714)
+.-..+|+++.
T Consensus 261 qL~~~~p~h~~ 271 (290)
T PF04733_consen 261 QLKQSNPNHPL 271 (290)
T ss_dssp HCHHHTTTSHH
T ss_pred HHHHhCCCChH
Confidence 88889999853
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.4e-07 Score=96.93 Aligned_cols=112 Identities=19% Similarity=0.128 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
.+.|++.|++||+++|..+..|.+||.++..+++...||.+++.||+++|+ ..-|-.|+.+...+|+|++|-.|++.|.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 388899999999999999999999999999999999999999999999997 5556679999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 572 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~ 572 (714)
+++=+-.....-.......+.++.+...++.+.
T Consensus 210 kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 210 KLDYDEANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred hccccHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 988664322222223344444555555555553
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-06 Score=97.05 Aligned_cols=87 Identities=21% Similarity=0.266 Sum_probs=72.9
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
.++.|+..|.|||+++|+.+..|-+|+.++...+.+..|+.|+++||+++|. ..+|+.||.++..++.+.+|+.+|++.
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 4478888888888888888888888888888888888888888888888886 566677788888888888888888888
Q ss_pred HhhCCCch
Q 005106 539 LTLSPDYR 546 (714)
Q Consensus 539 l~L~P~~~ 546 (714)
..+.|+..
T Consensus 99 ~~l~Pnd~ 106 (476)
T KOG0376|consen 99 KKLAPNDP 106 (476)
T ss_pred hhcCcCcH
Confidence 88888874
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1e-06 Score=101.04 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=57.2
Q ss_pred CCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeC----------CCCCCHHHHHHHHHhhccCC
Q 005106 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLS----------ENNISPSGLRIISDFSVTGS 246 (714)
Q Consensus 177 ~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~----------~~~i~~~~~~~lL~f~Ytg~ 246 (714)
+...+.||||.||++.|++||.||+++|++|+.+|.....-+....|.+. -++|.|..|+.+|+|+||++
T Consensus 554 ~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 554 YKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDT 633 (1267)
T ss_pred cccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccc
Confidence 34557899999999999999999999999999999876544433333332 22699999999999999996
Q ss_pred C
Q 005106 247 L 247 (714)
Q Consensus 247 l 247 (714)
+
T Consensus 634 ~ 634 (1267)
T KOG0783|consen 634 L 634 (1267)
T ss_pred c
Confidence 4
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.8e-07 Score=75.06 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=59.1
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
|.-+.+++++|.++..+|++++|+..|++|+++. |.-+.+++++|++++.+|++++|+..+++|++|-
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3446789999999999999999999999999763 2346789999999999999999999999999873
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=74.99 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=80.2
Q ss_pred chHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 588 ~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
+|+..|.|+|.+.|..+.+|+|++-++-..|++++|+.++++|+++.-+- ..+++.+|.++-.+|+-|.|-.+|+.
T Consensus 61 ~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~ 140 (175)
T KOG4555|consen 61 GALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEA 140 (175)
T ss_pred HHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHH
Confidence 37999999999999999999999999999999999999999999998764 56899999999999999999999999
Q ss_pred HHhcCCCHH
Q 005106 664 SIQMKRSFE 672 (714)
Q Consensus 664 Ai~i~~~~~ 672 (714)
|-.+-.+|+
T Consensus 141 AA~LGS~FA 149 (175)
T KOG4555|consen 141 AAQLGSKFA 149 (175)
T ss_pred HHHhCCHHH
Confidence 999988886
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00011 Score=75.91 Aligned_cols=242 Identities=17% Similarity=0.151 Sum_probs=168.4
Q ss_pred cchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC----ChhHHHHHHHH-
Q 005106 397 KEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC----EGDKRWEDLDK- 470 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~----~~~eAl~d~~k- 470 (714)
|.|..++..-.+.-.. +...-..++.|.|..+|.+..-+......- -|+ -.+......|. ..++-++....
T Consensus 22 Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~-lqAvr~~a~~~~~e~~~~~~~~~l~E~ 98 (299)
T KOG3081|consen 22 GNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK--ATP-LQAVRLLAEYLELESNKKSILASLYEL 98 (299)
T ss_pred hHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc--CCh-HHHHHHHHHHhhCcchhHHHHHHHHHH
Confidence 4455555444332222 223345677888888888765544322111 111 11111112221 11222322221
Q ss_pred -HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 005106 471 -ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (714)
Q Consensus 471 -Ai~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~ 549 (714)
|-+-+-++.-...-=|.+++.-|++++|+....+.. +.++.-.--.++.++.+.+-|....++..++|-+..
T Consensus 99 ~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--- 171 (299)
T KOG3081|consen 99 VADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--- 171 (299)
T ss_pred HHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH---
Confidence 333444455566677889999999999998877733 334444445688999999999999999999998742
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 005106 550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (714)
Q Consensus 550 ~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~ 629 (714)
..++ |.+|+.+...-..+.|. .=+|+..-+..|..+.+.+.++.+...+||++||...++.
T Consensus 172 ----LtQL-------------A~awv~la~ggek~qdA--fyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 172 ----LTQL-------------AQAWVKLATGGEKIQDA--FYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred ----HHHH-------------HHHHHHHhccchhhhhH--HHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 2333 77899888876665544 7788888888999999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 630 Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
|+.-+|++++.+.|+=.+-..+|.-.++...+---+..
T Consensus 233 aL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 233 ALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999999999999999999998887666654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.8e-05 Score=80.62 Aligned_cols=234 Identities=16% Similarity=0.114 Sum_probs=143.4
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-cchh----hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHIY----SIAGLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQER 455 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~----a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~------~~~ay~~r 455 (714)
.+-|.-..+..+++.|+..+.+.|+. +... .+-.+..+....|.+.+++..--..|..-.+ .-.+|.+.
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888887765 2211 1222445777788887776654444433211 12333333
Q ss_pred HhcCChhHHHHHHHHHHh-------cCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHH
Q 005106 456 SLYCEGDKRWEDLDKATA-------LDPTL-----SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLE 516 (714)
Q Consensus 456 g~~~~~~eAl~d~~kAi~-------LdP~~-----~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~ 516 (714)
.+- .+.+.+|+|++. +--+. .++...+|.+...++.++.+++.|++|+.+..+ .....
T Consensus 90 ar~---~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 90 ARS---NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHH---HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 222 444445555443 22222 245555677777777777777777777766332 12234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 005106 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (714)
Q Consensus 517 ~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qa 596 (714)
.+|-++..+.|+++|+-.-.+|.+|--++. + +|. =..|+.+
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~------------------l-------------------~d~--~~kyr~~ 207 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYG------------------L-------------------KDW--SLKYRAM 207 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcC------------------c-------------------Cch--hHHHHHH
Confidence 455566666666666666666555544431 0 111 1122222
Q ss_pred HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~------ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
..+.++.+|-++|+...|++..+.|.++.-..+ .-+...|-|+-..|+.|.||+.||+|+.+.++
T Consensus 208 ---------~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 208 ---------SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred ---------HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 246788899999999999999999988865443 44567889999999999999999999998765
Q ss_pred H
Q 005106 671 F 671 (714)
Q Consensus 671 ~ 671 (714)
-
T Consensus 279 ~ 279 (518)
T KOG1941|consen 279 L 279 (518)
T ss_pred h
Confidence 4
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0003 Score=73.63 Aligned_cols=296 Identities=15% Similarity=0.099 Sum_probs=193.1
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHh--hHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA--GLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~--~lg~~~~~~G~~~~A~~~~ 438 (714)
|....++++..-.+-.+ +..-++..+|.+|....+|.+|..+|++.-.+-|.++-+ +-+..+++.|.+..|++-.
T Consensus 25 ry~DaI~~l~s~~Er~p---~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSP---RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred hHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 45555555544333222 123456789999999999999999999977666665543 4567788888888887754
Q ss_pred HHHHhcCCCcHHHHHHHHhcCChhHHHH-------HHHHHHhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 439 NSVISSVTPLGWMYQERSLYCEGDKRWE-------DLDKATALDP--TLSYPYMYRASSLMTKQNVEAALAEINRILGFK 509 (714)
Q Consensus 439 ~~aI~~~p~~~~ay~~rg~~~~~~eAl~-------d~~kAi~LdP--~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~ 509 (714)
. .+..++++ .++. .+.+.||. --.-.++--| +.+...+|.|-++.+.|+|++|+.-|+.|+++.
T Consensus 102 ~-~~~D~~~L----~~~~--lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 102 F-LLLDNPAL----HSRV--LQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred H-HhcCCHHH----HHHH--HHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 3 22223322 2221 01122221 1234455566 678899999999999999999999999999987
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCch--h--------hhhh---------HHHHHHHHHHHHhh
Q 005106 510 L-ALECLELRFCFFLALEDYQAALCDVQAILTLS----PDYR--M--------FEGR---------VAASQLHMLVREHI 565 (714)
Q Consensus 510 P-~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~----P~~~--~--------~~~~---------~~a~~~~~~l~~~~ 565 (714)
. ++-..++.+.++...|+++.|+.....+++.. |..- | +.|+ ..+.++...+.-..
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 6 57778999999999999999999988877743 4321 0 1111 11444444444444
Q ss_pred hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-----KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~-----~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
++++.|. +.-+.+-|+ +|....|++.. ..-+++.+..+-++-.++++|--.+.
T Consensus 255 ~n~eAA~---------------------eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ET 312 (459)
T KOG4340|consen 255 RNYEAAQ---------------------EALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPET 312 (459)
T ss_pred ccHHHHH---------------------HHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHH
Confidence 4444442 111222222 34556666543 33467888899999999999988888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCC
Q 005106 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (714)
Q Consensus 641 ~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (714)
.-|+=+++.+..-|+-|-.. ++-+|+-.=+||- .|...||+--.-||.
T Consensus 313 FANlLllyCKNeyf~lAADv----LAEn~~lTyk~L~--------------~Yly~LLdaLIt~qT 360 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADV----LAENAHLTYKFLT--------------PYLYDLLDALITCQT 360 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHH----HhhCcchhHHHhh--------------HHHHHHHHHHHhCCC
Confidence 88888888888777777643 4557776666653 344556665555554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00034 Score=74.62 Aligned_cols=259 Identities=14% Similarity=0.050 Sum_probs=145.1
Q ss_pred hccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHhcCChhHH
Q 005106 395 LRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-------GWMYQERSLYCEGDKR 464 (714)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~~~---~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~-------~~ay~~rg~~~~~~eA 464 (714)
...+|..|+...+-++..+. .+...++|.+++.+|++++|.+.|.-+....... +..++-+|.| .+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y---~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY---IEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH---HHH
Confidence 45688889988888776632 2345678999999999999999999777754443 4444444555 666
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 465 l~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
-..-. -.|+.+---.-+-.+-+++|+-+ -+..|..-|+- ..+.-..++-++...--|.+||.-|.+++.-+|+
T Consensus 111 ~~~~~----ka~k~pL~~RLlfhlahklndEk-~~~~fh~~LqD--~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 111 KSIAE----KAPKTPLCIRLLFHLAHKLNDEK-RILTFHSSLQD--TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHh----hCCCChHHHHHHHHHHHHhCcHH-HHHHHHHHHhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 54332 23444332222233333344322 22333333311 1111112233333334467777777777777777
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc--CChHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL--NCPEA 622 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l--g~~ee 622 (714)
|......++ +.....+.++. |-.++.-=|..-|+++.+.+.++-.+.++ ||..+
T Consensus 184 y~alNVy~A------LCyyKlDYydv------------------sqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 184 YIALNVYMA------LCYYKLDYYDV------------------SQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred hhhhHHHHH------HHHHhcchhhh------------------HHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence 643222221 11111122222 23344555666666666666666666552 22221
Q ss_pred HH----------------HHH----------HHHHHhCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 623 AM----------------RSL----------QLARQHAAS----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 623 Al----------------~~~----------~~Al~l~P~----~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+. ... +-|++.-|. -+||..|+...++.+|+.+||+..-. .++|...
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP 316 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTP 316 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCCh
Confidence 11 110 123333332 46789999999999999999987654 5899888
Q ss_pred -HHHHHHHHhhccCCCCCc
Q 005106 673 -AFFLKAYALADSSQDSSC 690 (714)
Q Consensus 673 -a~~~~~~~~~~~~~~~~~ 690 (714)
.|-+||.+.+--+....|
T Consensus 317 ~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHHHHHHHHHHHhhhhcCc
Confidence 999999998866554443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00017 Score=70.93 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
+.++....++++..|+.. -.+.+|+++.++||+.||...|..++. +.-++..+..++.+....+++.+|..-.++..
T Consensus 73 ~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 73 ERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 344444456666667654 456788888888888888888888886 23346666667778888888888888888888
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~ 619 (714)
+-+|....-.+ .-+.+......+.+.+| -+-+++++.--|+ +.+....+.-|.++||
T Consensus 152 e~~pa~r~pd~----~Ll~aR~laa~g~~a~A------------------esafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 152 EYNPAFRSPDG----HLLFARTLAAQGKYADA------------------ESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred hcCCccCCCCc----hHHHHHHHHhcCCchhH------------------HHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 88887632111 11222222233333333 3446666666665 4556667777777777
Q ss_pred hHHHHHHHH----HHHHhCCCChhHHHHHHHHHHhcCCHH
Q 005106 620 PEAAMRSLQ----LARQHAASDHERLVYEGWILYDTSHCE 655 (714)
Q Consensus 620 ~eeAl~~~~----~Al~l~P~~~ea~~~~G~~ly~~G~~e 655 (714)
..||-.-|. ++.+-.|. ..-.++||+-...|+..
T Consensus 209 ~~ea~aq~~~v~d~~~r~~~H--~rkh~reW~~~A~~~~~ 246 (251)
T COG4700 209 LREANAQYVAVVDTAKRSRPH--YRKHHREWIKTANERLK 246 (251)
T ss_pred hhHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHH
Confidence 766655443 33343333 33456777665554443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0026 Score=72.61 Aligned_cols=313 Identities=10% Similarity=0.054 Sum_probs=183.5
Q ss_pred HHHHHHHhhhcCCCC-chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-----cchhh---
Q 005106 347 LYCLLSEVAMNLDPR-SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-----GHIYS--- 417 (714)
Q Consensus 347 ~~~~l~~V~~d~~~r-s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-----~~~~a--- 417 (714)
+.-+..-|..+++.- +...-.++..-.+-.++.+ ..-+..|+.=|...|.++.|...|++||.. ++...
T Consensus 213 w~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~--g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~ 290 (835)
T KOG2047|consen 213 WLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL--GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDA 290 (835)
T ss_pred HHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHH
Confidence 334444455555422 2233345544232222221 233456777788899999999999999876 22221
Q ss_pred --HhhHHHHHHHhC-------------CHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHH
Q 005106 418 --IAGLARLGYIKG-------------HKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPY 482 (714)
Q Consensus 418 --~~~lg~~~~~~G-------------~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay 482 (714)
.+.-.-+..+.+ +.+-.+..|++.+...|- -.=+-+++.||++..-|
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~------------------~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL------------------LLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch------------------HHHHHHHhcCCccHHHH
Confidence 111111111111 111112222222222210 01135788999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-cCCC-----H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 483 MYRASSLMTKQNVEAALAEINRILG-FKLA-----L-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~-l~P~-----~-~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
.+|-.++ .|+..+-+..|..|+. .+|. + ..|...|-+|...|+.+.|..-|++|.+.+=....
T Consensus 353 ~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~-------- 422 (835)
T KOG2047|consen 353 HKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE-------- 422 (835)
T ss_pred Hhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH--------
Confidence 9997665 5788899999999987 4663 2 34555778899999999999999999988644421
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCC-------------------hhHHHHHHHHHH
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPK-------------------GVLYFRQSLLLL 615 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~-------------------~~~~~~~g~~L~ 615 (714)
+.|..|.+-.+....-.+++ |+.++++|... |.+ ...|-..+.+..
T Consensus 423 -------------dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 423 -------------DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred -------------HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 00111222222211222222 34445554443 222 223556666667
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CH--H---HHHHHHHHhhccCCCCC
Q 005106 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR-SF--E---AFFLKAYALADSSQDSS 689 (714)
Q Consensus 616 ~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~-~~--~---a~~~~~~~~~~~~~~~~ 689 (714)
-+|=++.-...|++.+.|.=--+....|.|..|-.-.-|+++.+.|||-|+|=+ .. + .|.-|...-. ++.-+
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry-gg~kl- 566 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY-GGTKL- 566 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh-cCCCH-
Confidence 788888888888888888888888888888888888888888888888888833 22 2 3444444421 22222
Q ss_pred chhhHHHHHHHhhc-CCCC
Q 005106 690 CSSTVVSLLEDALK-CPSD 707 (714)
Q Consensus 690 ~~~~~~~~~~~~~~-~~~~ 707 (714)
...-.|.|.||+ ||.+
T Consensus 567 --EraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 567 --ERARDLFEQALDGCPPE 583 (835)
T ss_pred --HHHHHHHHHHHhcCCHH
Confidence 345567788875 7754
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-05 Score=86.55 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=67.6
Q ss_pred ccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHH
Q 005106 396 RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKA 471 (714)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kA 471 (714)
.+++++|+..|++..+.+| .+...+++++...++-.+|++.+++++...|..+..+..++.+ ++++.|+....+|
T Consensus 182 t~~~~~ai~lle~L~~~~p-ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDP-EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred cccHHHHHHHHHHHHhcCC-cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4689999999999777664 4566788888888887777777777776666665555444432 2335555555555
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEIN 503 (714)
Q Consensus 472 i~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~ 503 (714)
+++.|+...+|+.+|.+|..+|++++|+..+|
T Consensus 261 v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 261 VELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 55555555555555555555555555554444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-06 Score=94.52 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=80.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHH
Q 005106 422 ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEA 497 (714)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~e 497 (714)
+.-.+.-++++.|+..|.+||+++||.+..|.+|+. ...+.+|+.|+.+||+++|+...+|+.||.+.+.++++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 344566778888888888888888888888877753 2344899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-HHHH
Q 005106 498 ALAEINRILGFKLA-LECL 515 (714)
Q Consensus 498 Al~~~~kAL~l~P~-~~~~ 515 (714)
|+.+|++...+.|+ +++.
T Consensus 91 A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHhhhcCcCcHHHH
Confidence 99999999999997 6643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.5e-05 Score=74.84 Aligned_cols=74 Identities=11% Similarity=-0.055 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~ 678 (714)
++.|+.+|.++..++.+++|+..|-.|..++++|+...++.|.|++.+|+.++|...|+-+|. +|..+.---||
T Consensus 71 ~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A 144 (165)
T PRK15331 71 PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKA 144 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555555555 34444333333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-05 Score=77.51 Aligned_cols=83 Identities=10% Similarity=-0.151 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|...|.-..-+||.++..|+.+|.++..+|+|++|+..|..|..++++ |...+.-|.++..+|+.++|..+|..|++
T Consensus 54 ~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 54 DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 66666777777889999999999999999999999999999999999884 66677788999999999999999999999
Q ss_pred hCCCc
Q 005106 541 LSPDY 545 (714)
Q Consensus 541 L~P~~ 545 (714)
.|.+
T Consensus 134 -~~~~ 137 (165)
T PRK15331 134 -RTED 137 (165)
T ss_pred -Ccch
Confidence 5776
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.9e-06 Score=71.87 Aligned_cols=66 Identities=21% Similarity=0.160 Sum_probs=56.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGF----KLA----LECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l----~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
|+.+.+|.++|.+|.++|++++|+..|++++++ .++ ..++.+.|.++..+|++++|+..|++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455778999999999999999999999999976 222 334677899999999999999999999986
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.3e-05 Score=84.09 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
|+..++++|...|.+++++.-++..|...++++.|+...++|.++.|++-+.++.++.++..+|++++|+...+ ++-+.
T Consensus 219 AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN-s~Pm~ 297 (395)
T PF09295_consen 219 AIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN-SCPML 297 (395)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh-cCcCC
Confidence 36778888888888899999999999999999999999999999999999999999999999999999997666 66666
Q ss_pred CCHHHHHHHHHHhhc
Q 005106 669 RSFEAFFLKAYALAD 683 (714)
Q Consensus 669 ~~~~a~~~~~~~~~~ 683 (714)
|..+-+-+|-..-.+
T Consensus 298 ~~~~k~~~~~~~p~~ 312 (395)
T PF09295_consen 298 TYKDKYKLKRPVPAK 312 (395)
T ss_pred CCccchhhhcCCCcc
Confidence 666666666554333
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7e-06 Score=87.38 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=111.1
Q ss_pred EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCc--c--eEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC--E--DIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~--~--~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~lL 259 (714)
|.+-++++ .|||+.++ .+..||+.||.|+|.|+.- . ...++ ..+..+.+.+++|+|+++-+ +.++-..+++
T Consensus 295 iql~~~~R-yP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp--~~~~~vveI~lr~lY~d~td-i~~~~A~dvl 369 (516)
T KOG0511|consen 295 IQLPEEDR-YPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLP--SLADVVVEIDLRNLYCDQTD-IIFDVASDVL 369 (516)
T ss_pred cccccccc-ccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccc--hHHHHHHHHHHHHhhccccc-chHHHHhhHH
Confidence 44444444 99999999 5778999999999999652 2 22333 46678999999999999998 9999999999
Q ss_pred HHHhhhChh--h-HHHHHHHHHHhhcC--CHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCChHHHHHHhc
Q 005106 260 IFANKFCCE--R-LKDACDRKLASLVA--SREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFS 329 (714)
Q Consensus 260 ~aAd~~~v~--~-L~~~C~~~L~~~l~--~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~~~v~~ll~ 329 (714)
.+|+++-++ + |+.+-...+.+... +.-++..+++++.+-.+..|......++.+++...+++++..+.+.
T Consensus 370 l~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~ 444 (516)
T KOG0511|consen 370 LFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLR 444 (516)
T ss_pred HHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 999999776 2 66666666655432 2356899999999999999999999999999888888777766553
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00076 Score=79.31 Aligned_cols=228 Identities=14% Similarity=0.028 Sum_probs=158.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCcHHH--HHHHH--hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 427 IKGHKLWAYEKLNSVISSVTPLGWM--YQERS--LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEI 502 (714)
Q Consensus 427 ~~G~~~~A~~~~~~aI~~~p~~~~a--y~~rg--~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~ 502 (714)
..+++.+|++...+.++.+||...+ +-... +.+++++|...++.--.+.|++....--+-.+|.++|++++|...|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3467777888888888888774333 32221 3466688888888888888888889999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccc
Q 005106 503 NRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWS 582 (714)
Q Consensus 503 ~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~ 582 (714)
.|+++-+|+.+.......+|.+-++|.+--+.--+.-+.-|+.+.+++-+.-..+++ ....+...
T Consensus 101 e~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs-----~~~~~~~~---------- 165 (932)
T KOG2053|consen 101 ERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQS-----IFSENELL---------- 165 (932)
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHh-----ccCCcccc----------
Confidence 999999999666666778888888887655544444457788876665544433332 22222221
Q ss_pred cccccc-hHH--HHHHHHHhC-CCChhH-HHHHHHHHHHcCChHHHHHHH-HHHHHhCCCChhHHHHHHHHH-HhcCCHH
Q 005106 583 SVDDIG-SLS--VIYQMLESD-APKGVL-YFRQSLLLLRLNCPEAAMRSL-QLARQHAASDHERLVYEGWIL-YDTSHCE 655 (714)
Q Consensus 583 ~~~d~~-al~--~~~qaL~l~-P~~~~~-~~~~g~~L~~lg~~eeAl~~~-~~Al~l~P~~~ea~~~~G~~l-y~~G~~e 655 (714)
+.+- +++ .+++.++.. +-...+ -+-.=.+|..+|.++||++.+ ..-.+..|.....+.+++.-+ -.++++.
T Consensus 166 --~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 166 --DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred --cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 1011 233 677777776 222222 223345777899999999999 455566666666666666655 4569999
Q ss_pred HHHHHHHHHHhcCCCH
Q 005106 656 EGLRKAEESIQMKRSF 671 (714)
Q Consensus 656 eAl~~ye~Ai~i~~~~ 671 (714)
+-.+.-.+.+.-.|+.
T Consensus 244 ~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 244 ELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 9999999999999995
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-05 Score=81.85 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=76.2
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
++..|+..|.+||-++|+.+..|.||+..++++++++....+.+||++|+|+ ...++..|........|.+||..+++|
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999999998 677888999999999999999999999
Q ss_pred HhhC
Q 005106 539 LTLS 542 (714)
Q Consensus 539 l~L~ 542 (714)
..+-
T Consensus 105 ~sl~ 108 (284)
T KOG4642|consen 105 YSLL 108 (284)
T ss_pred HHHH
Confidence 6543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.8e-06 Score=60.25 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=27.3
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 005106 627 LQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 627 ~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
|++||+++|+|+++++++|++|+..|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888886
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=65.88 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELR 518 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R 518 (714)
++|+..|++++..+|++..++..+|.+|+++|++++|...+++++..+|+ +..+..+
T Consensus 8 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 8 DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 77888888888888888888888888888888888888888888888887 4444333
|
... |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0065 Score=67.31 Aligned_cols=278 Identities=13% Similarity=0.086 Sum_probs=162.2
Q ss_pred HHhccchHHHHHHHHHHHhc-c--chhhHhhHHH--HHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHH-H----HhcCCh
Q 005106 393 RLLRKEYDEAEHLFEAAVNA-G--HIYSIAGLAR--LGYIKGHKLWAYEKLNSVISSVTPL-GWMYQE-R----SLYCEG 461 (714)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~~-~--~~~a~~~lg~--~~~~~G~~~~A~~~~~~aI~~~p~~-~~ay~~-r----g~~~~~ 461 (714)
-...|...-|...|++|++. + ........+. .-..+..++.|--.|.-||.--|.. +.-++. - .++|+.
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~ 296 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDK 296 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcch
Confidence 33567788888888888876 2 2222222333 3344667777777788888877764 222221 1 234433
Q ss_pred ---hHHHH-----HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH-H-------HHHH--
Q 005106 462 ---DKRWE-----DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL-R-------FCFF-- 522 (714)
Q Consensus 462 ---~eAl~-----d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~-R-------~~~~-- 522 (714)
++++- .|++-++-+|.+.++|...--+--..|+.+.-...|.|||.--|- .+.-+- | ..+|
T Consensus 297 ~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeE 376 (677)
T KOG1915|consen 297 EGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEE 376 (677)
T ss_pred hhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 55553 599999999999999999888888889999999999999987664 221111 1 1233
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH------------HHHHHHhhhhhhHHHH---HHhhhhcccccccc
Q 005106 523 LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL------------HMLVREHIDNWTIADC---WLQLYDRWSSVDDI 587 (714)
Q Consensus 523 ~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~------------~~~l~~~~~~~~~A~~---~~~l~~~~~~~~d~ 587 (714)
+...|.+.+.+.|+.+|.|=|.-..-+.+.=.+.. +..+-.+.+...+... +..+=..+...|+-
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHH
Confidence 45689999999999999999985432222111111 1111111111111110 00111111111111
Q ss_pred chHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 005106 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY--DTSHCEEGLRKAEESI 665 (714)
Q Consensus 588 ~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly--~~G~~eeAl~~ye~Ai 665 (714)
-..|++-|+-+|.+-.+|...|.+-..||+-+.|...|..|+.-..-+.--+....-|-+ ..|.++.|-+.|++-+
T Consensus 457 --RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 457 --RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred --HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 225666666677777777777776667777777777777666655444333333343332 2366777777777776
Q ss_pred hcCCCHH
Q 005106 666 QMKRSFE 672 (714)
Q Consensus 666 ~i~~~~~ 672 (714)
...+-..
T Consensus 535 ~rt~h~k 541 (677)
T KOG1915|consen 535 DRTQHVK 541 (677)
T ss_pred Hhcccch
Confidence 6655554
|
|
| >PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.7e-06 Score=74.99 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=67.7
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHHHHHhccccccchhhhccchhhhHHHHHHHhhhcCC
Q 005106 288 AVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359 (714)
Q Consensus 288 ~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~ 359 (714)
|++++.+|..+++..|...|.+++..||.. .|+.+.+..+++++++. +..|..++.++++|+.++..
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~-----v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLN-----VSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS-------ECTCCCHHHHHHHHHHCTHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccc-----cccHHHHHHHHHHHHHhCHH
Confidence 788889999999999999999888888865 77888999999999884 67788999999999999987
Q ss_pred CCchhHHHHHHHHHHhh
Q 005106 360 PRSDKTVCFLERLLESA 376 (714)
Q Consensus 360 ~rs~~~~~LLe~Lv~~a 376 (714)
.|.++...|++. +|++
T Consensus 76 ~r~~~~~~Ll~~-iR~~ 91 (103)
T PF07707_consen 76 NREEHLKELLSC-IRFP 91 (103)
T ss_dssp HHTTTHHHHHCC-CHHH
T ss_pred HHHHHHHHHHHh-CCcc
Confidence 788888888876 5543
|
BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.2e-06 Score=59.58 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=31.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 005106 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (714)
Q Consensus 468 ~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~ 500 (714)
|+|||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999973
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00065 Score=67.00 Aligned_cols=118 Identities=13% Similarity=0.050 Sum_probs=87.2
Q ss_pred HHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHhcCChhHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcCCHHHH
Q 005106 426 YIKGHKLWAYEKLNSVISSVTP------LGWMYQERSLYCEGDKRWEDLDKAT-ALDPTLSYPYMYRASSLMTKQNVEAA 498 (714)
Q Consensus 426 ~~~G~~~~A~~~~~~aI~~~p~------~~~ay~~rg~~~~~~eAl~d~~kAi-~LdP~~~~ay~~rg~~l~~l~r~~eA 498 (714)
.+.=|++.+++...+.++.-|. ++.+..+.|.+ .||...|.+|+ .+-.+++.-...++.+....+++.+|
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~---~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRY---HEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhh---hhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 3334444444444445554443 34444445444 77777776665 35667777888899999999999999
Q ss_pred HHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 499 LAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 499 l~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
...+++..+.+|. ++.....+.++..+|++++|...|+.++.--|+..
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 9999999999994 66666678889999999999999999999999863
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.056 Score=58.99 Aligned_cols=287 Identities=16% Similarity=0.117 Sum_probs=200.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc--cchhh--HhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHh
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQERSL 457 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~a--~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~-----~~~ay~~rg~ 457 (714)
...|.+..-.|+-..|.+.=.++-++ ..... +..-+..-...|+++.|.+-|+..+. +|. +--.|.+-..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 35688888899999998888877644 22222 23335677889999999999985544 342 2233333334
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHH-HHHHHH------HHhcCCHH
Q 005106 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECL-ELRFCF------FLALEDYQ 529 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~-~~R~~~------~~~lgd~e 529 (714)
.|..+-|..+-++|-+..|....++...=....+.|+++.||.-.+...+-.- ..+.. ..|+.+ -.---|..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 46668899999999999999999999999999999999999998887665432 22211 122221 22335789
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHH
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYF 608 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~ 608 (714)
.|..+-..+++|.|++..+. .........- ++.+ +-.+++.+...+|--..+
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaa------v~AAralf~d-------------------~~~rKg~~ilE~aWK~ePHP~ia-- 299 (531)
T COG3898 247 SARDDALEANKLAPDLVPAA------VVAARALFRD-------------------GNLRKGSKILETAWKAEPHPDIA-- 299 (531)
T ss_pred HHHHHHHHHhhcCCccchHH------HHHHHHHHhc-------------------cchhhhhhHHHHHHhcCCChHHH--
Confidence 99999999999999995421 1111011111 2222 245789999998864332
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH---HhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccC
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLAR---QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al---~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~ 685 (714)
.++.+..--+-++.-+++|- .+.|+|.+........-++-|+|..|-...|.++.+.|.--+|.|.|-.=+-..
T Consensus 300 ---~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAet 376 (531)
T COG3898 300 ---LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAET 376 (531)
T ss_pred ---HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhcc
Confidence 23333333344555555554 568999999999999999999999999999999999999889988875543222
Q ss_pred CCCCchhhHHHHHHHhhcCCCC
Q 005106 686 QDSSCSSTVVSLLEDALKCPSD 707 (714)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~ 707 (714)
=| --.|-+.|-.|+|-|-|
T Consensus 377 GD---qg~vR~wlAqav~APrd 395 (531)
T COG3898 377 GD---QGKVRQWLAQAVKAPRD 395 (531)
T ss_pred Cc---hHHHHHHHHHHhcCCCC
Confidence 23 34799999999999977
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00028 Score=67.19 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
+..+++.|...++.|+|++|+..|+....--|. ..+-..++.+|...|++++|+..+++-++|+|++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 467888999999999999999999999998883 344455889999999999999999999999999853
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0035 Score=65.05 Aligned_cols=146 Identities=19% Similarity=0.198 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQE 454 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~---~~~ay~~ 454 (714)
...+|+-|...++.|+|++|+..|++.....| ..+...++-++++.|+++.|+...++-|.++|+ -..+++-
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 45678999999999999999999999876643 335667888999999999999999999999874 5677777
Q ss_pred HHhcCC------------hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 005106 455 RSLYCE------------GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFF 522 (714)
Q Consensus 455 rg~~~~------------~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~ 522 (714)
+|.... -.+|+.+|...|.--|+...+---. .++-....+++..+.+| |..|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~----~~i~~~~d~LA~~Em~I------------aryY 177 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK----ARIVKLNDALAGHEMAI------------ARYY 177 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH----HHHHHHHHHHHHHHHHH------------HHHH
Confidence 775310 0455556666666666554322111 11111222222222222 3567
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC
Q 005106 523 LALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 523 ~~lgd~e~Al~d~~~al~L~P~ 544 (714)
.+.|.+..|+.-++.+++-=|+
T Consensus 178 ~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 178 LKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred HHhcChHHHHHHHHHHHhcccc
Confidence 7777777777777777766444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0001 Score=70.12 Aligned_cols=73 Identities=21% Similarity=0.121 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHH
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGWMYQER 455 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~---~~~ay~~r 455 (714)
..+++-|...++.|+|++|++.|+.....-| ..+...+|-+|++.|++++|+..+.+-|+++|+ ...+|+.+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 4556777777777777777777777544421 223445666666666666666666666666553 23444444
Q ss_pred H
Q 005106 456 S 456 (714)
Q Consensus 456 g 456 (714)
|
T Consensus 91 g 91 (142)
T PF13512_consen 91 G 91 (142)
T ss_pred H
Confidence 4
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.1e-05 Score=83.69 Aligned_cols=87 Identities=21% Similarity=0.188 Sum_probs=79.0
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 005106 426 YIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAE 501 (714)
Q Consensus 426 ~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~ 501 (714)
+..|.++.|++.|.++|+++|.++..|-.|+.. .+...|+.||+.|++++|+.+..|..||.+...+|.+++|-.+
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 556889999999999999999999999999753 4458999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCH
Q 005106 502 INRILGFKLAL 512 (714)
Q Consensus 502 ~~kAL~l~P~~ 512 (714)
+..|.+++-+.
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 99999987653
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.7e-05 Score=77.45 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
|+.+|-+||.++|..+.+|.|++++++++++++-...+.++|+++.|+.+-+++.+|.++.....|++|+....||.++
T Consensus 29 ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 29 AIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999999775
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00049 Score=72.05 Aligned_cols=177 Identities=18% Similarity=0.062 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECL-ELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~-~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
.+||+.+.--.+-+|..-....-+|.+|...++|.+|...|.+.-.+-|...-| ..-+..+...+.+.+|++.......
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 677777777777788777788888888888888888888888888888864333 3355667777888888775544322
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCC--CChhHHHHHHHHHHHcC
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA--PKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P--~~~~~~~~~g~~L~~lg 618 (714)
- |+- +....++ +.| -+.++-|..++-+.++| -| +.++..++.|-++.+-|
T Consensus 107 ~-~~L-----~~~~lqL-----------qaA-------IkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 107 N-PAL-----HSRVLQL-----------QAA-------IKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred C-HHH-----HHHHHHH-----------HHH-------HhcccccCcchHHHHHh----ccCCCccchhccchheeeccc
Confidence 1 211 1111222 222 22333344445555444 35 67888999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.+|+|+.-++.|++..--++-.-+|.+.+.|..|+++.|+..-.+.|+
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987766554
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00025 Score=72.42 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChh
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGD 462 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~ 462 (714)
-++++.|+-++..|+|+||+..|..||.. +.. ...-+=|..+. ++.-..-+.+.-|....+.+-|.| -
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L-------~lkEkP~e~eW-~eLdk~~tpLllNy~QC~L~~~e~---y 247 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNL-------QLKEKPGEPEW-LELDKMITPLLLNYCQCLLKKEEY---Y 247 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH-------HhccCCCChHH-HHHHHhhhHHHHhHHHHHhhHHHH---H
Confidence 35689999999999999999999998754 110 00111122221 111122233444555666666555 6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 005106 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC 514 (714)
Q Consensus 463 eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~ 514 (714)
++++..+..+..+|++..||+.||-+...-=+.+||-+||.++|+++|....
T Consensus 248 evleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 248 EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 7777777778888888888888888777777778888888888877776443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.5e-05 Score=53.63 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+++++++|.+++.+|++++|+..|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3566677777777777777777777777777664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00054 Score=71.50 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=87.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccc-----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH-----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
.|+.+..+...|+|.+|+..|.+=|+.-| ..|+++||.+++.+|++.+|...|.++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-------------
Confidence 78888999999999999999999998843 557899999999999999998888877777763
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECL 515 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~ 515 (714)
.|.-+++++.+|.++.++|+.++|-+.|+.+++--|+.+..
T Consensus 211 --------------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 211 --------------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred --------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 35556788999999999999999999999999999975543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.12 Score=57.57 Aligned_cols=317 Identities=12% Similarity=0.090 Sum_probs=209.2
Q ss_pred HHHHHHhccchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH----hcCChh
Q 005106 389 LGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGD 462 (714)
Q Consensus 389 lG~~~~~~g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg----~~~~~~ 462 (714)
.|.--..++++..|...|++||..++.+ .|...+-.-.+......|...+++||.+.|.....|+.-- .++...
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccH
Confidence 3444566788999999999999886544 3444556666777888899999999999998777766531 123338
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005106 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 463 eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~ 542 (714)
+|...|++=++..|+- .+|..--.-=.+-+..+-|-..|.|-+-.-|+...|.--+-+-.+-|..+-|...|.+|++.=
T Consensus 159 gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 159 GARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 8889999999999974 577766666666778888888998888878887777666667778888888888888888865
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhh-hhccc----------------cccccc----hHH-----HHHHH
Q 005106 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL-YDRWS----------------SVDDIG----SLS-----VIYQM 596 (714)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l-~~~~~----------------~~~d~~----al~-----~~~qa 596 (714)
.+..+... ....-.......+.++.|...-+. .|.+. ..+|.. ++. .|+..
T Consensus 238 ~~d~~~e~---lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 238 GDDEEAEI---LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred hhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 55432110 001111111222222222111000 01111 112222 122 78999
Q ss_pred HHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH----HHHHH------hcCCHHHHHHHHHHHHh
Q 005106 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE----GWILY------DTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 597 L~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~----G~~ly------~~G~~eeAl~~ye~Ai~ 666 (714)
+..+|-|-++||..=.+....|..+.-++.|++|+.--|--.+--+.+ =|+-| ...+.+.+-+.|...|.
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888744432222 23333 35899999999999999
Q ss_pred cCCCHHHHHHHHHHhhc----cCCCCCchhhHHHHHHHhh-cCCCCccccC
Q 005106 667 MKRSFEAFFLKAYALAD----SSQDSSCSSTVVSLLEDAL-KCPSDRLRKG 712 (714)
Q Consensus 667 i~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 712 (714)
|=|--.==|-|-+.++- --+|-.-. -+.|-.|+ +||-|.|=||
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~A---RkiLG~AIG~cPK~KlFk~ 442 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGA---RKILGNAIGKCPKDKLFKG 442 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHH---HHHHHHHhccCCchhHHHH
Confidence 98865433334333331 12232222 23444554 7998887665
|
|
| >PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.8e-05 Score=66.31 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=69.7
Q ss_pred EEEEEcCeEEEeehhhhh-cCCHHHHHhhcCC---CCcCCcceEEeCCCCCCHHHHHHHHHhhcc-CCCCCCCHHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFA-ALSAPFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPNLLLEI 258 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLA-a~S~yF~amF~~~---~~Es~~~~I~l~~~~i~~~~~~~lL~f~Yt-g~l~~i~~~~v~~l 258 (714)
|+|.|||+.|.+-+..|. ....+|..||.+. ........+-|. -+|..|+.||+|+.+ +.+.......+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5567999999974 444556778776 799999999999999 77772235678899
Q ss_pred HHHHhhhChhhH-HHHH
Q 005106 259 LIFANKFCCERL-KDAC 274 (714)
Q Consensus 259 L~aAd~~~v~~L-~~~C 274 (714)
+.-|++|+++.+ ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999999 7776
|
They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C .... |
| >KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0003 Score=72.01 Aligned_cols=96 Identities=20% Similarity=0.302 Sum_probs=83.2
Q ss_pred EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC-c-CCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCC--HHHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM-E-SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT--PNLLLEIL 259 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~-E-s~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~--~~~v~~lL 259 (714)
|.+-|||+.|..++.-|.=..-+|++||.+++. + .....|-|. =||.-|..+|+||..|.+. ++ ...+.+|+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~-LPe~~kel~El~ 82 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVD-LPESEKELKELL 82 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhccccc-CccchHHHHHHH
Confidence 678999999999999999999999999999873 2 234668887 7999999999999988877 65 45688999
Q ss_pred HHHhhhChhhHHHHHHHHHHhhcC
Q 005106 260 IFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 260 ~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
.=|.+|.++.|++.|..-+.....
T Consensus 83 ~EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 83 REAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHHhhHHHHHHHHHHHhhhccc
Confidence 999999999999999998887654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00012 Score=55.44 Aligned_cols=43 Identities=21% Similarity=0.121 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 646 (714)
+.+|+.+|.++..+|++++|++.|+++++.+|+|++++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678899999999999999999999999999999999888874
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0059 Score=63.29 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCC
Q 005106 467 DLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQ-AALCDVQAILTLSP 543 (714)
Q Consensus 467 d~~kAi~LdP~~~~ay~~rg~~l~~l~-r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e-~Al~d~~~al~L~P 543 (714)
.-+.+|+++|.+.-.|.+|-.++..++ ...+=+..++.+++-+| +.+.|+.|..+...+|+.. .=+.-...++..|.
T Consensus 65 LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~Da 144 (318)
T KOG0530|consen 65 LTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDA 144 (318)
T ss_pred HHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccc
Confidence 334455555555555555555554443 23444444455555555 2555555555544445444 33444444444444
Q ss_pred Cc
Q 005106 544 DY 545 (714)
Q Consensus 544 ~~ 545 (714)
++
T Consensus 145 KN 146 (318)
T KOG0530|consen 145 KN 146 (318)
T ss_pred cc
Confidence 43
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00011 Score=51.96 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
.+|+++|.++..+|++++|+..|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=4.1e-05 Score=78.47 Aligned_cols=57 Identities=25% Similarity=0.193 Sum_probs=44.8
Q ss_pred eEEEeehhhhhcCCHHHHHhhcCCCCcCC---------cceEEeCCCCCCHHHHHH-HHHhhccCCCC
Q 005106 191 EKIECDRQKFAALSAPFSAMLNGSFMESL---------CEDIDLSENNISPSGLRI-ISDFSVTGSLN 248 (714)
Q Consensus 191 ~~f~aHr~VLAa~S~yF~amF~~~~~Es~---------~~~I~l~~~~i~~~~~~~-lL~f~Ytg~l~ 248 (714)
.+|.||+.|.|++|++||.++....+|.. ..+|.+.+ -|-|.+|.. ++.|+||++++
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD 327 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD 327 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc
Confidence 37999999999999999999976554432 35677776 566777664 68999999887
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0013 Score=68.59 Aligned_cols=105 Identities=13% Similarity=0.027 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
.++-|.-+...|+|.+|...|..=|.--|+ +.+++.+|.++..+|+|++|...|.++.+--|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------------ 211 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------------ 211 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------------
Confidence 667777788888888888888888888884 4667778888888888888888888888877775
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
|+-+++.+-+|.++.++|..++|-..+++.+.--|+.
T Consensus 212 -------------------------------------------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 212 -------------------------------------------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred -------------------------------------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 6667888888888888888888888888888888876
Q ss_pred hhHH
Q 005106 638 HERL 641 (714)
Q Consensus 638 ~ea~ 641 (714)
.-|-
T Consensus 249 ~aA~ 252 (262)
T COG1729 249 DAAK 252 (262)
T ss_pred HHHH
Confidence 6543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.029 Score=60.53 Aligned_cols=262 Identities=14% Similarity=0.047 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC----
Q 005106 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP---- 447 (714)
Q Consensus 379 ~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~-------~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~---- 447 (714)
......++-++...+...-++.+++.+-+.-+.+. +-+++.-+|+++.-+|.++++++.|++|...-.+
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 33455677777777777677777777766666552 2344556788888888888888888888876433
Q ss_pred ---------cHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 448 ---------LGWMYQERSLYCEGDKRWEDLDKATALDPTLS----------YPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 448 ---------~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~----------~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
+|..|-... ++++|+-...||.+|--+.. -+.+.++.+|..+|+.-.|.+..+.|-++
T Consensus 159 ~LElqvcv~Lgslf~~l~---D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLK---DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred eeeeehhhhHHHHHHHHH---hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 333333333 33778777777777655443 45677899999999999999999999887
Q ss_pred CCC--HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 005106 509 KLA--LECLE-----LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (714)
Q Consensus 509 ~P~--~~~~~-----~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~ 581 (714)
... ..+.+ ..|.+|...||.|.|-+-|+.|...-..--.-.|++.+..- .|.||..+--.
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g------------~Akc~~~~r~~- 302 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDG------------AAKCLETLRLQ- 302 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHH------------HHHHHHHHHHh-
Confidence 542 22333 34678999999999999999998754332111122333222 23333222111
Q ss_pred ccccccchHHHHHHHHHhCCCC----h--hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHH
Q 005106 582 SSVDDIGSLSVIYQMLESDAPK----G--VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 655 (714)
Q Consensus 582 ~~~~d~~al~~~~qaL~l~P~~----~--~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~e 655 (714)
...-.-+++....++|++...- . ..+-+.+.++--+|..++=-..+.+|-+.. .+.-.|-|.+=...|--+
T Consensus 303 ~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~---~e~~L~Cg~CGe~~Glk~ 379 (518)
T KOG1941|consen 303 NKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV---EETELYCGLCGESIGLKN 379 (518)
T ss_pred hcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH---HHHhhhhhhhhhhhcCCc
Confidence 0011123566666666664321 1 236677777777888777777777765553 556677777766666666
Q ss_pred HHHH
Q 005106 656 EGLR 659 (714)
Q Consensus 656 eAl~ 659 (714)
|-++
T Consensus 380 e~Lq 383 (518)
T KOG1941|consen 380 ERLQ 383 (518)
T ss_pred cccc
Confidence 6554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0037 Score=64.73 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
..-+....++..+|.|.-.+..++++|+.+|. +.....+|-+-.+-||.+.|...|+++-+-+-.-....+.+...-.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 45667888999999999999999999999863 6666677888999999999999999776433221100000000000
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005106 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (714)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (714)
...+---.. +-..+...++.+++.||.++.+-+|+++++.-+|+..+|+...+.+++..|.
T Consensus 258 ~a~i~lg~n------------------n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQN------------------NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheeccc------------------chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 000000001 1111344566677777777777777777777777777777777777777765
|
|
| >smart00875 BACK BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00013 Score=64.27 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=54.4
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHhhc--------cCCCChHHHHHHhccccccchhhhccchhhhHHHHHHHhhhcCCC
Q 005106 289 VELMGYAIEENSPVLAVSCLQVFLREL--------PDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360 (714)
Q Consensus 289 l~l~~~A~~~~~~~L~~~c~~~~l~~~--------~~~L~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~~ 360 (714)
+.++.+|..++++.|.+.|.+++..|| +..|+.+.+..++.++++. +..|..++.+++.|+.++...
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~-----v~~E~~v~~av~~W~~~~~~~ 76 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLN-----VPSEEEVFEAVLRWVKHDPER 76 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCC-----CCCHHHHHHHHHHHHHCCHHH
Confidence 344455555555555555555544443 3367888999999999884 667889999999999998743
Q ss_pred CchhHHHHHHHHHHh
Q 005106 361 RSDKTVCFLERLLES 375 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~ 375 (714)
+. ....++++ +++
T Consensus 77 ~~-~~~~ll~~-ir~ 89 (101)
T smart00875 77 RR-HLPELLSH-VRF 89 (101)
T ss_pred HH-HHHHHHHh-CCC
Confidence 33 66677776 443
|
The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.032 Score=65.23 Aligned_cols=266 Identities=14% Similarity=0.013 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHhc-----cchHHHHHHHHHHHh-------ccchhhHhhHHHHHHHhC-----CHHHHHHHHHHHHhc
Q 005106 382 RLLAFHQLGCVRLLR-----KEYDEAEHLFEAAVN-------AGHIYSIAGLARLGYIKG-----HKLWAYEKLNSVISS 444 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~-----g~y~eA~~~f~~AL~-------~~~~~a~~~lg~~~~~~G-----~~~~A~~~~~~aI~~ 444 (714)
+..+.+.+|.++..- ++.+.|+.+|..|.+ .+...+.+++|++|.... +...|+..|.++...
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 345666777776653 689999999999888 567778899999998854 677899999999999
Q ss_pred CCCcHHHHHHHHh-cC----ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCHHHH
Q 005106 445 VTPLGWMYQERSL-YC----EGDKRWEDLDKATALDPTLSYPYMYRASSLMTK----QNVEAALAEINRILGFKLALECL 515 (714)
Q Consensus 445 ~p~~~~ay~~rg~-~~----~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l----~r~~eAl~~~~kAL~l~P~~~~~ 515 (714)
..+.+..+...-. .+ ....|...|..|.. -.+..+++++|..|..= .+...|...|.||-+.+ .+.+.
T Consensus 323 g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~ 399 (552)
T KOG1550|consen 323 GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAA 399 (552)
T ss_pred CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhH
Confidence 8776665554421 11 23688888877764 46778899998888743 47889999999999887 55545
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 005106 516 ELRFCFFLAL-EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (714)
Q Consensus 516 ~~R~~~~~~l-gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~ 594 (714)
+.++.++... ++++.+..-+....++.-...... +..+.. ... ..+.......+...+...+.
T Consensus 400 ~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~----a~~l~~----~~~--------~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 400 YLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSN----AAYLLD----QSE--------EDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhH----HHHHHH----hcc--------ccccccccccchhHHHHHHH
Confidence 5555433222 888888887777766654432211 111100 000 01111100111111233333
Q ss_pred HHHHhCCCChhHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc----CCHHHHHHHHHHHHh
Q 005106 595 QMLESDAPKGVLYFRQSLLLLRL----NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT----SHCEEGLRKAEESIQ 666 (714)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~l----g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~----G~~eeAl~~ye~Ai~ 666 (714)
++ ..++++.+.+.+|.++..- ..++-|...|.+|-.-. +.+.+|+|+++-.- + +..|...|.+|.+
T Consensus 464 ~a--~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 464 RA--AAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASE 537 (552)
T ss_pred HH--HhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHh
Confidence 33 3467888888888888774 45889999999999888 99999999997643 4 7899999999988
Q ss_pred cCCCHH
Q 005106 667 MKRSFE 672 (714)
Q Consensus 667 i~~~~~ 672 (714)
.+...-
T Consensus 538 ~~~~~~ 543 (552)
T KOG1550|consen 538 EDSRAY 543 (552)
T ss_pred cCchhh
Confidence 665443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.14 Score=55.96 Aligned_cols=248 Identities=14% Similarity=0.074 Sum_probs=176.1
Q ss_pred HHHHHhccchHHHHHHHHHHHhccchhhHhhHHH---HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH----HhcCChh
Q 005106 390 GCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLAR---LGYIKGHKLWAYEKLNSVISSVTPLGWMYQER----SLYCEGD 462 (714)
Q Consensus 390 G~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~---~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~r----g~~~~~~ 462 (714)
...-+.-|+|++|.+-|+.-+.-.... ..|+-. --..+|+.+.|..+-.++-+.-|.+.|+.... -.-++.+
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLDDPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhcChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH
Confidence 444556799999999999876542222 233222 23568999999999999999999999988654 3456779
Q ss_pred HHHHHHHHHH---hcCCCChH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005106 463 KRWEDLDKAT---ALDPTLSY-----PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALC 533 (714)
Q Consensus 463 eAl~d~~kAi---~LdP~~~~-----ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~ 533 (714)
+|+...+... -+.|+-+. .+...+..+.+. +...|..+-..+++++|+ ..+...-+.++.+.|+..++-.
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhh
Confidence 9988766433 34444332 222334444443 478899999999999998 4555666778999999999999
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHH
Q 005106 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSL 612 (714)
Q Consensus 534 d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~ 612 (714)
-++.+.+.+|.-.- + .+|-...+-|-.- -+.-..+--++-|++.+..+..+.
T Consensus 285 ilE~aWK~ePHP~i-----------------------a----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~ 337 (531)
T COG3898 285 ILETAWKAEPHPDI-----------------------A----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAE 337 (531)
T ss_pred HHHHHHhcCCChHH-----------------------H----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 99999999998521 1 2222222222110 123344456778999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhc
Q 005106 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-ly~~G~~eeAl~~ye~Ai~i 667 (714)
.-+.-|.+-.|..-.+.+.+..|... ++.-++-| --.+|+-.+.-+..-|+++-
T Consensus 338 aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 338 AALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99999999999999999999999966 44444444 34569999999888888874
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00022 Score=50.13 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
+++++++|.+++.+|++++|+..|++|++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 345666666666666666666666666666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.037 Score=57.56 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=126.8
Q ss_pred cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 005106 413 GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK 492 (714)
Q Consensus 413 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l 492 (714)
.|+.-++.-|....+.|++.+|++.|++....+|..+++ ++ +...++-+++..
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--~q-------------------------a~l~l~yA~Yk~ 84 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--EQ-------------------------AQLDLAYAYYKN 84 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--HH-------------------------HHHHHHHHHHhc
Confidence 355556666666788899999999888888888765554 22 335567788888
Q ss_pred CCHHHHHHHHHHHHhcCCC-H---HHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 005106 493 QNVEAALAEINRILGFKLA-L---ECLELRFCFFLA--------LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (714)
Q Consensus 493 ~r~~eAl~~~~kAL~l~P~-~---~~~~~R~~~~~~--------lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~ 560 (714)
+++++|+..+++=|.+.|+ + .+++.+|..+.. ..--.+|+.+|+..++-=|+..-. .-+......
T Consensus 85 ~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya---~dA~~~i~~ 161 (254)
T COG4105 85 GEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA---PDAKARIVK 161 (254)
T ss_pred ccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch---hhHHHHHHH
Confidence 9999999999999999884 2 334567765332 333467888888899888886321 001111111
Q ss_pred HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---C
Q 005106 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---D 637 (714)
Q Consensus 561 l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~ 637 (714)
+... |+-.+- ..|..+.+-|.+.+|..-++..++--|+ -
T Consensus 162 ~~d~-------------------------LA~~Em-------------~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 162 LNDA-------------------------LAGHEM-------------AIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred HHHH-------------------------HHHHHH-------------HHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 1111 111111 2344556666666666666666666444 3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
.+++..+..+++.+|-.++|= ...+.|..+...-.|.--+|.+..
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~-~~~~vl~~N~p~s~~~~~~~~~~~ 248 (254)
T COG4105 204 REALARLEEAYYALGLTDEAK-KTAKVLGANYPDSQWYKDAYRLLQ 248 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCCcchhhhhhccc
Confidence 467777777778888777775 666777765555556666665543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0044 Score=68.81 Aligned_cols=276 Identities=17% Similarity=0.125 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc-------c----c---------hhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-------G----H---------IYSIAGLARLGYIKGHKLWAYEKLNSV 441 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-------~----~---------~~a~~~lg~~~~~~G~~~~A~~~~~~a 441 (714)
.-++++|+|+++++.|.|.-++.+|.+|++- + + -...++.|..+...|++..|+.+|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 4567789999999999999999999999961 1 1 123678999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHhcCCh-----------------------------------------------------hHHHHHH
Q 005106 442 ISSVTPLGWMYQERSLYCEG-----------------------------------------------------DKRWEDL 468 (714)
Q Consensus 442 I~~~p~~~~ay~~rg~~~~~-----------------------------------------------------~eAl~d~ 468 (714)
+..+..++..|...+..|.. +=|.-++
T Consensus 362 v~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCL 441 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCL 441 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHH
Confidence 99988888888776432100 2233344
Q ss_pred HHHHhcCCCCh--HHHHHHHHHHHhcCCHHHH------------HH-HHHHHHhcCCC-HHHHH--------HHHHHHHh
Q 005106 469 DKATALDPTLS--YPYMYRASSLMTKQNVEAA------------LA-EINRILGFKLA-LECLE--------LRFCFFLA 524 (714)
Q Consensus 469 ~kAi~LdP~~~--~ay~~rg~~l~~l~r~~eA------------l~-~~~kAL~l~P~-~~~~~--------~R~~~~~~ 524 (714)
+.|+-|-|.-- ....+.|..--+.|.-.|- -. -+.-+..-.|. .+.+. +-+++-++
T Consensus 442 rnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~ 521 (696)
T KOG2471|consen 442 RNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELE 521 (696)
T ss_pred HhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 45554443210 0001111111111110000 00 00000000111 11111 12344566
Q ss_pred cCCHHHHHHHHHHHHhhCCCc--hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hH--HHHHH----
Q 005106 525 LEDYQAALCDVQAILTLSPDY--RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SL--SVIYQ---- 595 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~P~~--~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al--~~~~q---- 595 (714)
+||.-.|+..-++.+++.-=. .-+.|++=|...+. ..++..+|-++.+-|.. ..++++ .. .++++
T Consensus 522 Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~----lldr~seA~~HL~p~~~--~~~~f~~~~n~~Df~~~~~~ 595 (696)
T KOG2471|consen 522 LGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALC----LLDRPSEAGAHLSPYLL--GQDDFKLPYNQEDFDQWWKH 595 (696)
T ss_pred hcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH----HcCChhhhhhccChhhc--CCcccccccchhhhhhhhcc
Confidence 666666666666666653211 12334433322222 12233333322222111 122332 11 13333
Q ss_pred ----------HH-----HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChhHHHHHHHHHHhcCCHHHHH
Q 005106 596 ----------ML-----ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA--SDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 596 ----------aL-----~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P--~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
+- ..+..-...++|+|.++...|.++.|...+..|..+-| .+.+|....=.+-+.+|+.+.|+
T Consensus 596 ~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al 675 (696)
T KOG2471|consen 596 TETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDAL 675 (696)
T ss_pred ccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchH
Confidence 11 11122234589999999999999999999999999999 78999999999999999999999
Q ss_pred HHHHH
Q 005106 659 RKAEE 663 (714)
Q Consensus 659 ~~ye~ 663 (714)
+...|
T Consensus 676 ~~lk~ 680 (696)
T KOG2471|consen 676 ARLKQ 680 (696)
T ss_pred HHHHh
Confidence 87765
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.041 Score=57.20 Aligned_cols=179 Identities=15% Similarity=0.092 Sum_probs=139.5
Q ss_pred chHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc-----CChhHHHHHHHHHH
Q 005106 398 EYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY-----CEGDKRWEDLDKAT 472 (714)
Q Consensus 398 ~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~-----~~~~eAl~d~~kAi 472 (714)
+|.++..+|+..|..+ ..-..|+.....+|.++|.+-.+|+-|-.+ ....+-++.++..|
T Consensus 41 ~fr~~m~YfRAI~~~~---------------E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~ 105 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKN---------------EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEII 105 (318)
T ss_pred hHHHHHHHHHHHHhcc---------------ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4566666666554443 333566777788999999887777766432 12366778899999
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVE-AALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG 550 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~-eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~ 550 (714)
+-+|.+.+.|..|-.+.-.+|.+. .=++...++|..+. +..+|..|-|+....++|+.=+......|+.|--|
T Consensus 106 e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N----- 180 (318)
T KOG0530|consen 106 EDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN----- 180 (318)
T ss_pred HhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-----
Confidence 999999999999999999999888 78899999998877 48899999999999999999999999999988644
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch-------HHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS-------LSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a-------l~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
=-+|.+.|..+....+.-. +...-.+|.+-|++-.+|+.+.-++..
T Consensus 181 --------------------NSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 181 --------------------NSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred --------------------cchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 1257777777776544432 446677889999999999888777765
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0041 Score=63.79 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=94.3
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 005106 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (714)
Q Consensus 415 ~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r 494 (714)
..++...|+-++.+|++.+|...|..||..-.+ ++-+-.- ++. .=++|+.-....+.|...++...|.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~----L~lkEkP--~e~------eW~eLdk~~tpLllNy~QC~L~~~e 245 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRN----LQLKEKP--GEP------EWLELDKMITPLLLNYCQCLLKKEE 245 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH----HHhccCC--CCh------HHHHHHHhhhHHHHhHHHHHhhHHH
Confidence 445677888899999999999999988875211 0000000 011 1233444456788999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 495 VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
|-|+++..+.+|...|. ..+++.||-++...=+.++|.+||.++++++|...
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 99999999999999995 78899999999999999999999999999999863
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.054 Score=62.27 Aligned_cols=289 Identities=14% Similarity=0.077 Sum_probs=190.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC----------cH
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTP----------LG 449 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~----------~~ 449 (714)
+...|..|-..|+++.|...|++|.+.+.. ..|..-|-.-....+++.|++.+.+|...=.+ -.
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 356788888899999999999999988432 23444555666677888999988887754111 01
Q ss_pred HHHHHH-----HhcCChhH-------HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C-HHH
Q 005106 450 WMYQER-----SLYCEGDK-------RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A-LEC 514 (714)
Q Consensus 450 ~ay~~r-----g~~~~~~e-------Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P--~-~~~ 514 (714)
++-.-+ +.|-+++| -.+.|++.|+|-=--++.-+|-|+.+-+-+-+++|...|+|.|.+=| + .+.
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~di 549 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDI 549 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHH
Confidence 111111 22333344 45789999999999999999999999999999999999999999743 4 566
Q ss_pred HHH-H--HHHHHhcCCHHHHHHHHHHHHhhCCCchh---hhhhHHHHHHHHHHHHhhhhhhHHH----------HHHhhh
Q 005106 515 LEL-R--FCFFLALEDYQAALCDVQAILTLSPDYRM---FEGRVAASQLHMLVREHIDNWTIAD----------CWLQLY 578 (714)
Q Consensus 515 ~~~-R--~~~~~~lgd~e~Al~d~~~al~L~P~~~~---~~~~~~a~~~~~~l~~~~~~~~~A~----------~~~~l~ 578 (714)
|.. + +.-....-..+.|...|++|++..|--.. |.-..-....-|+.++...-++.|. .|.-..
T Consensus 550 W~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 643 2 23344444789999999999999984311 2222222233344444444443332 111111
Q ss_pred hcccc-ccccchHHHHHHHHHhCCCCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHH
Q 005106 579 DRWSS-VDDIGSLSVIYQMLESDAPKG--VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 655 (714)
Q Consensus 579 ~~~~~-~~d~~al~~~~qaL~l~P~~~--~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~e 655 (714)
-+-.. ++-..--..|++||+.=|.+- +...+-+..-.++|..+.|..+|.-.-++-|-....-+.-.|--+...|=.
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 11000 011112338999999977653 345667777888999999999999888887776777777777766553333
Q ss_pred HHHHHHHHHHhcCCCHHHHHH
Q 005106 656 EGLRKAEESIQMKRSFEAFFL 676 (714)
Q Consensus 656 eAl~~ye~Ai~i~~~~~a~~~ 676 (714)
| .-|+.-++|++|.+|=|+
T Consensus 710 e--dT~keMLRikRsvqa~yn 728 (835)
T KOG2047|consen 710 E--DTYKEMLRIKRSVQATYN 728 (835)
T ss_pred H--HHHHHHHHHHHHHHHhhh
Confidence 3 357888888888886554
|
|
| >KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=58.12 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=63.8
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCC--cCCcceEEeCCCCCCHHHHHHHHHhh-----ccCC------CCC
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFS-----VTGS------LNG 249 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~--Es~~~~I~l~~~~i~~~~~~~lL~f~-----Ytg~------l~~ 249 (714)
|+++- +|.+|-..|- +|.-|+-.|+||.|... |...++|.+++ |....++.+.+|+ ||+. .+
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~d--i~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~- 94 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRD--IPSHILEKVCEYLAYKVRYTNSSTEIPEFD- 94 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEecc--chHHHHHHHHHHhhheeeeccccccCCCCC-
Confidence 66665 5566666554 68899999999998654 55668999995 9999999999987 6665 33
Q ss_pred CCHHHHHHHHHHHhhhCh
Q 005106 250 VTPNLLLEILIFANKFCC 267 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v 267 (714)
|+++.+++||.+|+++.+
T Consensus 95 IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 95 IPPEMALELLMAANYLEC 112 (112)
T ss_pred CCHHHHHHHHHHhhhhcC
Confidence 789999999999998864
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.014 Score=71.59 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC--HHHHH---HHHHHHHhcCCHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLA--LECLE---LRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~-l~P~--~~~~~---~R~~~~~~lgd~e~Al~d~ 535 (714)
.+-.+||++-+.-+|+.+..|++-=.-..+++..++|-+.+.|||. +|+. .+.++ ..-++-..-|.-+.-.+-|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 3445677888888888888888777777778888888888888876 4553 22222 2222334445666666677
Q ss_pred HHHHhhCCCchhhh------hhHH-HHHHHHHHHHhhhhhh-HHHHHHhhhhccccccccc-hHHHHHHHHHhCCC--Ch
Q 005106 536 QAILTLSPDYRMFE------GRVA-ASQLHMLVREHIDNWT-IADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP--KG 604 (714)
Q Consensus 536 ~~al~L~P~~~~~~------~~~~-a~~~~~~l~~~~~~~~-~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~--~~ 604 (714)
++|-+..--|.-+. -+.+ -...-..++..++.+. +-..|....+.+-+.++.+ |-.++.+||..-|. +.
T Consensus 1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 77776655442211 0000 0000011111122221 3344555555555555544 34466666666666 55
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHhh
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYALA 682 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~--~a~~~~~~~~~ 682 (714)
+.----+.+-++.|+.|.+...++--+.-.|.-.+.+...--.-.+.|+-+-.-..|||+|.+.=+- .-||.|=|.-+
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 5555556666666666666666666666666666666666666666677777777777777764333 35555555444
Q ss_pred ccC
Q 005106 683 DSS 685 (714)
Q Consensus 683 ~~~ 685 (714)
.++
T Consensus 1681 Ek~ 1683 (1710)
T KOG1070|consen 1681 EKS 1683 (1710)
T ss_pred HHh
Confidence 443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.019 Score=58.80 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhcCCCCh------HHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCC
Q 005106 462 DKRWEDLDKATALDPTLS------YPYMYRASSLMTK-QNVEAALAEINRILGFKLA-------LECLELRFCFFLALED 527 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~------~ay~~rg~~l~~l-~r~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd 527 (714)
.+|+..+++||++--+.- ..++.+|.+|-.. .+++.||+.|+.|-++-.. ..|+.--+..-..+|+
T Consensus 90 ~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq 169 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ 169 (288)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH
Confidence 666666666666433321 2233455555443 6666666666666654321 1122222333445555
Q ss_pred HHHHHHHHHHHHhhCCCc
Q 005106 528 YQAALCDVQAILTLSPDY 545 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~ 545 (714)
|.+||.-|+++..-.-++
T Consensus 170 Y~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 666666555555554444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00049 Score=48.34 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
+.+|+.+|.++..+|++++|+..+++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0016 Score=69.35 Aligned_cols=75 Identities=21% Similarity=0.129 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGF---KLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l---~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
+..|..=|+=|+.-+||..|+..|.+.|+- ||+ .-+|.||+.+...+|+|-.||.|+.+|+.++|.+.-++.|++
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 566778899999999999999999999987 454 455788999999999999999999999999999966555543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.073 Score=62.24 Aligned_cols=270 Identities=14% Similarity=0.006 Sum_probs=176.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHh-----CCHHHHHHHHHHHHh-------c-----CCCcH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIK-----GHKLWAYEKLNSVIS-------S-----VTPLG 449 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~-----G~~~~A~~~~~~aI~-------~-----~p~~~ 449 (714)
...|......++..+|..+|+.+-+.++..+...+|.+++.- .+.+.|+.++..+.+ . .-.+|
T Consensus 216 ~~~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg 295 (552)
T KOG1550|consen 216 EGEGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLG 295 (552)
T ss_pred cccCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHH
Confidence 344444555556789999999999999999999999987754 589999999999887 2 22478
Q ss_pred HHHHHHHhcC--ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 005106 450 WMYQERSLYC--EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRILGFKLALECLELRFCFFLA 524 (714)
Q Consensus 450 ~ay~~rg~~~--~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~---r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~ 524 (714)
.+|.+..... ..+.|+..|.+|-++.. +.+.+.+|.++..-. ++..|...|.+|...- ...+.+..+.+|..
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYEL 372 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHh
Confidence 8887764322 45889999999998865 566788888888766 4679999999998432 34444444443322
Q ss_pred ----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC
Q 005106 525 ----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600 (714)
Q Consensus 525 ----lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~ 600 (714)
.-+.+.|...|.+|-+.++-.++ -+..+....+ +..++.+.. ...+.++..++... ...+.
T Consensus 373 G~gv~r~~~~A~~~~k~aA~~g~~~A~--~~~~~~~~~g-----~~~~~~~~~-~~~~~a~~g~~~~q----~~a~~--- 437 (552)
T KOG1550|consen 373 GLGVERNLELAFAYYKKAAEKGNPSAA--YLLGAFYEYG-----VGRYDTALA-LYLYLAELGYEVAQ----SNAAY--- 437 (552)
T ss_pred CCCcCCCHHHHHHHHHHHHHccChhhH--HHHHHHHHHc-----cccccHHHH-HHHHHHHhhhhHHh----hHHHH---
Confidence 23899999999999999832211 1122222211 134444422 12222222222111 11111
Q ss_pred CCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc---CC-HHHHHHHHHHHHhcCCCHH
Q 005106 601 APKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT---SH-CEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~---G~-~eeAl~~ye~Ai~i~~~~~ 672 (714)
...+...... ....+.+...+.++.. +.+.+|...+|.+++.- ++ ++.|...|.+|-... -.
T Consensus 438 ------l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~ 507 (552)
T KOG1550|consen 438 ------LLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQ 507 (552)
T ss_pred ------HHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hH
Confidence 1111100011 2356667777777765 45888999999999886 44 999999999998888 55
Q ss_pred HHHHHHHHhhcc
Q 005106 673 AFFLKAYALADS 684 (714)
Q Consensus 673 a~~~~~~~~~~~ 684 (714)
+.|+-||-..=.
T Consensus 508 ~~~nlg~~~e~g 519 (552)
T KOG1550|consen 508 ALFNLGYMHEHG 519 (552)
T ss_pred HHhhhhhHHhcC
Confidence 999999987643
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.028 Score=63.17 Aligned_cols=44 Identities=9% Similarity=-0.174 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHh--cCChhHHHHHHHHHHhc
Q 005106 431 KLWAYEKLNSVISSVTPLGWMYQERSL--YCEGDKRWEDLDKATAL 474 (714)
Q Consensus 431 ~~~A~~~~~~aI~~~p~~~~ay~~rg~--~~~~~eAl~d~~kAi~L 474 (714)
+...++.-.+|++++|+.+.||.-++. ..-..||.+.|.||++-
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHH
Confidence 344455556677777777777666643 11225666666666653
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.02 Score=60.52 Aligned_cols=157 Identities=16% Similarity=0.062 Sum_probs=106.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHH
Q 005106 485 RASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE 563 (714)
Q Consensus 485 rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~ 563 (714)
-|.-.++.|++.+|...|..+++..|+ .++....+.+|...|+.++|..-+...-.-..+. ... + +..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--------~~~--~-l~a 208 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--------AAH--G-LQA 208 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--------HHH--H-HHH
Confidence 344566778888888888888888885 5666667778888888887766554432222221 000 0 222
Q ss_pred hhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHH
Q 005106 564 HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DHERL 641 (714)
Q Consensus 564 ~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea~ 641 (714)
.++...+| ...+ -...+.+.+..||.+.++.+-.+..+...|++++|++.+=..++.+-+ +.++-
T Consensus 209 ~i~ll~qa----------a~~~---~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 209 QIELLEQA----------AATP---EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred HHHHHHHH----------hcCC---CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 22233333 2222 245789999999999999999999999999999999998888877654 45566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 642 VYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 642 ~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
-.+=.++.-.|.-|...-.|+|=+
T Consensus 276 k~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 276 KTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHH
Confidence 666666777777777777776643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.085 Score=58.26 Aligned_cols=198 Identities=13% Similarity=-0.093 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhc------cchhhHhhHHHHHHH---hCCHHHHHHHHHH-HHhcCCCcHHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA------GHIYSIAGLARLGYI---KGHKLWAYEKLNS-VISSVTPLGWMY 452 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~------~~~~a~~~lg~~~~~---~G~~~~A~~~~~~-aI~~~p~~~~ay 452 (714)
....+++=..|-..++|+.=+...+..=.+ +....-...|.++.+ .|+.++|+..+.. .....++.+.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344456666777788888777777753322 111122234555555 6777777777766 333445566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q 005106 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAAL 532 (714)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al 532 (714)
.-.|.. .-+..++-++++... .+.|+..|.|+.+++|+.....|.+.++...|.-.+..
T Consensus 221 gL~GRI--------yKD~~~~s~~~d~~~-------------ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 221 GLLGRI--------YKDLFLESNFTDRES-------------LDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHH--------HHHHHHHcCccchHH-------------HHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccch
Confidence 666554 011122222222211 66777777777777776555566666655555433332
Q ss_pred HHHHHHH-hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 005106 533 CDVQAIL-TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (714)
Q Consensus 533 ~d~~~al-~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g 611 (714)
...+++. +++ ......+.+......|+-| ..+
T Consensus 280 ~el~~i~~~l~----------~llg~kg~~~~~~dYWd~A-------------------------------------Tl~ 312 (374)
T PF13281_consen 280 EELRKIGVKLS----------SLLGRKGSLEKMQDYWDVA-------------------------------------TLL 312 (374)
T ss_pred HHHHHHHHHHH----------HHHHhhccccccccHHHHH-------------------------------------HHH
Confidence 2222222 110 0011112222333333333 244
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005106 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 648 (714)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l 648 (714)
.+..-.|+++.|...+++++++.|..-+..-+.+.+.
T Consensus 313 Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~ 349 (374)
T PF13281_consen 313 EASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIK 349 (374)
T ss_pred HHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 5556678888888888888888887766555555543
|
|
| >KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00044 Score=73.96 Aligned_cols=120 Identities=21% Similarity=0.145 Sum_probs=100.5
Q ss_pred CeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHH---HHHHHHhhhC
Q 005106 190 EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL---EILIFANKFC 266 (714)
Q Consensus 190 ~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~---~lL~aAd~~~ 266 (714)
+..|.+|+.+++++|+.|++|+..+..+..+..+++.+ .++..++.+..|.|+..-. ...+.+. .++.++.+++
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d--~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLE--EKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccc--cchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 56699999999999999999999987777777777774 8999999999999997654 3444454 8889999999
Q ss_pred hhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHh
Q 005106 267 CERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLR 313 (714)
Q Consensus 267 v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~ 313 (714)
...++..|...+.+.+. ..++..++..+..+....+...|..+...
T Consensus 186 ~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAA 231 (297)
T ss_pred cHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence 99999999999999985 56767777788888888888888877654
|
|
| >KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00059 Score=70.22 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=61.4
Q ss_pred CCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCH---HHH
Q 005106 179 QVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP---NLL 255 (714)
Q Consensus 179 ~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~---~~v 255 (714)
....||-++.....|++||++||+++|+|+.+.+++-.-......++.--|++-++|..+|.|+|||+.. +.. .|+
T Consensus 128 k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfg-mEd~~fqn~ 206 (401)
T KOG2838|consen 128 KVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFG-MEDLGFQNS 206 (401)
T ss_pred eeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccc-hhhcCCchH
Confidence 3345888888889999999999999999999887653211222222222269999999999999999876 322 233
Q ss_pred HHHHHHHhhhChh
Q 005106 256 LEILIFANKFCCE 268 (714)
Q Consensus 256 ~~lL~aAd~~~v~ 268 (714)
.-|-.+..-|++.
T Consensus 207 diL~QL~edFG~~ 219 (401)
T KOG2838|consen 207 DILEQLCEDFGCF 219 (401)
T ss_pred HHHHHHHHhhCCc
Confidence 3344444555544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.017 Score=59.96 Aligned_cols=138 Identities=13% Similarity=0.061 Sum_probs=96.7
Q ss_pred hhhHHHHHHHH--HHHHHHHHhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHHhCCHHHHHHHHHHHHh----cCC
Q 005106 376 AETDRQRLLAF--HQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVIS----SVT 446 (714)
Q Consensus 376 a~~~lq~~~A~--~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~~a~~~lg~~~~~~G~~~~A~~~~~~aI~----~~p 446 (714)
....|.+.... +.+..++.-.|+|.-....+.+.|+.++ +....++|++..+.||.+.|-..|++.-+ ++.
T Consensus 168 sv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~ 247 (366)
T KOG2796|consen 168 SIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG 247 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc
Confidence 34455554333 5666677788999999999999999852 22456899999999999999877773332 211
Q ss_pred CcHHHH--HHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 447 PLGWMY--QERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE 513 (714)
Q Consensus 447 ~~~~ay--~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~ 513 (714)
--+.+. .+.... ..+.+|...|++.++.||.++.+-+|.|.+++-+|+..+|+.....+++..|.+.
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 111111 111111 2337788888888888888888888888888888888888888888888888643
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.17 Score=60.21 Aligned_cols=217 Identities=12% Similarity=-0.013 Sum_probs=133.6
Q ss_pred hccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHhcCChhHHH
Q 005106 395 LRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW-------MYQERSLYCEGDKRW 465 (714)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~-------ay~~rg~~~~~~eAl 465 (714)
..++++.|....++.++. +-.+|-..-|.++.++|+.++|...++..-...+++-. .|...+. +++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~---~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK---LDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh---hhHHH
Confidence 456777788888887776 33445556677888888888888776654445554333 3333333 38888
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCC---------HHHHHHH
Q 005106 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECLELRFCFFLALED---------YQAALCD 534 (714)
Q Consensus 466 ~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~--~~~~~R~~~~~~lgd---------~e~Al~d 534 (714)
..|++|+.-+|+ .+-.+.+-++|.+.+.|.+--..-=+.-+.-|+. -.|..--.+...... ..-|.++
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 888888888888 7777777788887777654332222222234542 222222222222222 2335667
Q ss_pred HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHH--HHHHHhCCCChhHHHHHHH
Q 005106 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI--YQMLESDAPKGVLYFRQSL 612 (714)
Q Consensus 535 ~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~--~qaL~l~P~~~~~~~~~g~ 612 (714)
+++.++.. +... ..+-..+.-.+...+..|++| +.++ ..|=.+-+.+...-+..+.
T Consensus 177 ~~~~l~~~-gk~~---s~aE~~Lyl~iL~~~~k~~ea------------------l~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 177 VQKLLEKK-GKIE---SEAEIILYLLILELQGKYQEA------------------LEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred HHHHhccC-Cccc---hHHHHHHHHHHHHhcccHHHH------------------HHHHHHHHHHhccccchHHHHHHHH
Confidence 77777777 2211 111222333445555556666 3333 4445556666777777888
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 613 LLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
.+..++++.+=.+...+++.-+|||
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhCCcc
Confidence 8888999999999999999999998
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.23 Score=49.81 Aligned_cols=82 Identities=23% Similarity=0.168 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~---~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~--~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
++|...++.++..-.+. +-+-.++|-++.++|++++|+..++..- +++. -....||-++...||-++|...|.
T Consensus 106 d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~ 183 (207)
T COG2976 106 DKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYE 183 (207)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHH
Confidence 66666666555433332 2345678999999999999999998876 5553 335779999999999999999999
Q ss_pred HHHhhCCCc
Q 005106 537 AILTLSPDY 545 (714)
Q Consensus 537 ~al~L~P~~ 545 (714)
++++.+++.
T Consensus 184 kAl~~~~s~ 192 (207)
T COG2976 184 KALESDASP 192 (207)
T ss_pred HHHHccCCh
Confidence 999998765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0021 Score=48.59 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
++++..+|.++..+|++++|.+.|+++++.+|++. +++..|
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 46889999999999999999999999999999998 887765
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0032 Score=67.12 Aligned_cols=65 Identities=22% Similarity=0.181 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRF-CFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~-~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
--|.|||.+...+|+|..||.|..+|+.++|..-..+.|+ .++.++.++++|+..++..++++-.
T Consensus 120 vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 120 VLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 3466777777777777777777777777777643344554 4677777777777766666655544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.046 Score=58.59 Aligned_cols=185 Identities=11% Similarity=0.003 Sum_probs=131.2
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHh--hHHHHHHHhCCHHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA--GLARLGYIKGHKLWAYEKLN 439 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~--~lg~~~~~~G~~~~A~~~~~ 439 (714)
.-.+.+.++.++.-+..+.......|.-..+...+|++-+|...+++.|+--|.+-.. ---.+++..|+.+.-...++
T Consensus 82 ~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~ 161 (491)
T KOG2610|consen 82 NVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIE 161 (491)
T ss_pred hhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHH
Confidence 3345556666554443332222334555667778899999999999998886766433 23347888899998888888
Q ss_pred HHHhc-CCCcHHHHHHHHh-------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 440 SVISS-VTPLGWMYQERSL-------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 440 ~aI~~-~p~~~~ay~~rg~-------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
+.|.. +++.+..-+--|. ++.+++|-..-++|+++||++..+....+-++.+.+|+.|+.+...+--..=-.
T Consensus 162 kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~ 241 (491)
T KOG2610|consen 162 KIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ 241 (491)
T ss_pred HhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh
Confidence 88887 6665433333332 355699999999999999999999999999999999999999988775422111
Q ss_pred ---HHHH--HHHHHHHHhcCCHHHHHHHHHHHH--hhCCCch
Q 005106 512 ---LECL--ELRFCFFLALEDYQAALCDVQAIL--TLSPDYR 546 (714)
Q Consensus 512 ---~~~~--~~R~~~~~~lgd~e~Al~d~~~al--~L~P~~~ 546 (714)
..++ ..-+.++.+.+.|+.|+.-|++-+ +++.++.
T Consensus 242 s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 242 SWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 1122 224678999999999999998744 4666653
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.17 Score=52.10 Aligned_cols=123 Identities=15% Similarity=0.030 Sum_probs=88.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHH------HHHhc-----CChhHHHHHHHHHHhcCCCC------hHHHHHHHH
Q 005106 425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQ------ERSLY-----CEGDKRWEDLDKATALDPTL------SYPYMYRAS 487 (714)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~p~~~~ay~------~rg~~-----~~~~eAl~d~~kAi~LdP~~------~~ay~~rg~ 487 (714)
.++.+++.+|+..+.++|+++.+.|.--. ..|.+ .+.++||..|++|-+.-... -..+..-|.
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 35567899999999999998765443322 33433 23378888888887654433 244566677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 488 SLMTKQNVEAALAEINRILGFKLA-------LECLEL-RFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 488 ~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~~-R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
.-..+++|.+||..|+++.....+ ...|+. -|.+++..+|.-.|-+.+++=.+++|.+..
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 777889999999999999875432 122344 356888889999999999999999999854
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.16 Score=59.95 Aligned_cols=141 Identities=12% Similarity=-0.070 Sum_probs=76.6
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHH----------hcCCCcHHHHHHH-
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI----------SSVTPLGWMYQER- 455 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI----------~~~p~~~~ay~~r- 455 (714)
-.+...|...|.+++|.+.-+.-=++.-...|++.+.-+...||...|++.|+|+- ..+|+.-.-|.++
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 34556666777777776644321111122234566666777788888888887542 2244333333333
Q ss_pred ---------Hhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 005106 456 ---------SLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFF 522 (714)
Q Consensus 456 ---------g~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~ 522 (714)
|.| |..+.|+..|..|-. |+..--++.-+|+.++|-...+. ..+-.+-+..|.-|
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~e----sgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEE----SGDKAACYHLARMY 977 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHh----cccHHHHHHHHHHh
Confidence 222 333666666655532 44444455555555555443332 11222234566678
Q ss_pred HhcCCHHHHHHHHHHHH
Q 005106 523 LALEDYQAALCDVQAIL 539 (714)
Q Consensus 523 ~~lgd~e~Al~d~~~al 539 (714)
...|++.+|+.-|.+|-
T Consensus 978 En~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 88888888888777643
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.036 Score=52.60 Aligned_cols=100 Identities=19% Similarity=0.104 Sum_probs=65.0
Q ss_pred HHHhCCHHHHHHHHHHHHhcCC--------CcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 005106 425 GYIKGHKLWAYEKLNSVISSVT--------PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (714)
Q Consensus 425 ~~~~G~~~~A~~~~~~aI~~~p--------~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~ 496 (714)
....|+...++..+.+++.++. ...|+...|..+ .+. ...+...++..+...|+++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l---~~~-------------~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERL---REL-------------YLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHH---HHH-------------HHHHHHHHHHHHHHTT-HH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH---HHH-------------HHHHHHHHHHHHHhccCHH
Confidence 3445566666666666666542 234444444332 111 1245567788888999999
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 497 AALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 497 eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
+|+..+++++.++|- -..+...-.+|..+|+..+|++.|++..+
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999995 55566667789999999999998888643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.073 Score=58.74 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=108.6
Q ss_pred CchhHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHh---ccchHHHHHHHHHHHhcc---chhhHhhHHHHHHHhCCHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQ-RLLAFHQLGCVRLL---RKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLW 433 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq-~~~A~~~lG~~~~~---~g~y~eA~~~f~~AL~~~---~~~a~~~lg~~~~~~G~~~~ 433 (714)
..+.++.|.+.+...+..... ....-++.+.++-. .|+.++|+..+.+++... ..+.+--+|++|-..
T Consensus 156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~----- 230 (374)
T PF13281_consen 156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL----- 230 (374)
T ss_pred hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-----
Confidence 455667777775555422111 12223455555555 799999999999977662 344556678877632
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-hc----
Q 005106 434 AYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL-GF---- 508 (714)
Q Consensus 434 A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL-~l---- 508 (714)
.++........ .++|+..|.|+.+++| +.++-.|.+.++.-.|...+.-.+.+++. .+
T Consensus 231 -------~~~s~~~d~~~---------ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll 293 (374)
T PF13281_consen 231 -------FLESNFTDRES---------LDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLL 293 (374)
T ss_pred -------HHHcCccchHH---------HHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 11111111111 3899999999999996 56788999999999998777766666554 11
Q ss_pred ------CCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 509 ------KLALECLEL--RFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 509 ------~P~~~~~~~--R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.+..+.|.. ++.+..-.||+++|++.+++++++.|..
T Consensus 294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 122344432 5567888999999999999999999875
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.043 Score=52.00 Aligned_cols=61 Identities=26% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+...++..+...|++++|++.+++++.++|.+-.++..+-.++..+|+..+|+..|++..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455777888999999999999999999999999999999999999999999999998743
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.003 Score=44.48 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
++++.+|.++..+|++++|+..|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3445555555555555555555555555544
|
... |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.066 Score=49.40 Aligned_cols=106 Identities=20% Similarity=0.167 Sum_probs=71.8
Q ss_pred HHHHHHH--HHHHHhccchHHHHHHHHHHHhcc----------c----hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 005106 383 LLAFHQL--GCVRLLRKEYDEAEHLFEAAVNAG----------H----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT 446 (714)
Q Consensus 383 ~~A~~~l--G~~~~~~g~y~eA~~~f~~AL~~~----------~----~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p 446 (714)
+.+|..| |.-.++-|.|++|...+.+|.+.. | +..+.+|+.++..+|+|++++..-.+++.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~--- 83 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR--- 83 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH---
Confidence 3444444 444566789999999999998761 1 23477899999999999999877665443
Q ss_pred CcHHHHHH-HHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 447 PLGWMYQE-RSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 447 ~~~~ay~~-rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
|+| ||.+.+-+..+. ..+.++||.++..+|+.+||+..|+++-+.
T Consensus 84 -----YFNRRGEL~qdeGklW------------IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 84 -----YFNRRGELHQDEGKLW------------IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -----HHHHH--TTSTHHHHH------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -----HHhhccccccccchhH------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333 354433333331 235678999999999999999999998763
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.004 Score=43.77 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
+.+|+.+|.++..+|++++|+..|+++++++|+|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3679999999999999999999999999999964
|
... |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.2 Score=53.21 Aligned_cols=158 Identities=13% Similarity=-0.036 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhc----cchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHHHHHHHHHHHhcCCCcH-HHHHH
Q 005106 384 LAFHQLGCVRLLR----KEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLG-WMYQE 454 (714)
Q Consensus 384 ~A~~~lG~~~~~~----g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~----~G~~~~A~~~~~~aI~~~p~~~-~ay~~ 454 (714)
.+...+|..+..- ++..+|..+|.++.+.++..+.+.+|.++.. ..+..+|..+|++|.......+ .+.+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~ 153 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYR 153 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 3455566655543 4688999999999999999999999998876 4589999999999999855443 22222
Q ss_pred HHh-----------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005106 455 RSL-----------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRF 519 (714)
Q Consensus 455 rg~-----------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P~~~~~~~R~ 519 (714)
.|. ......|+..|.+|-++. +..+..++|..|.. ..++.+|+.-|.+|-+... ....++.+
T Consensus 154 l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~ 230 (292)
T COG0790 154 LGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG 230 (292)
T ss_pred HHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 221 112247888999988888 88999999988865 3578999999999998877 66566666
Q ss_pred HHHHhcC---------------CHHHHHHHHHHHHhhCCCc
Q 005106 520 CFFLALE---------------DYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 520 ~~~~~lg---------------d~e~Al~d~~~al~L~P~~ 545 (714)
++...| +...|...++++-...+..
T Consensus 231 -~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 231 -LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred -HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 444444 8889999999988888775
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.4 Score=59.69 Aligned_cols=234 Identities=13% Similarity=0.080 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHHhccchhhHhhHH--HHHHHhCCHHHHHHHHHHHHhc-CC-------CcHHHHHHHHh-cCChhHHHHH
Q 005106 399 YDEAEHLFEAAVNAGHIYSIAGLA--RLGYIKGHKLWAYEKLNSVISS-VT-------PLGWMYQERSL-YCEGDKRWED 467 (714)
Q Consensus 399 y~eA~~~f~~AL~~~~~~a~~~lg--~~~~~~G~~~~A~~~~~~aI~~-~p-------~~~~ay~~rg~-~~~~~eAl~d 467 (714)
-.+-.++|++-+.-.|..+..++- .-+.++++.++|.+...+|+.- ++ |.-.||.|.-+ |+..+.-.+-
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 334567888888877777644433 3467789999999999999873 44 45567777754 4444555678
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 468 ~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~-l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
|++|-..+-- .-.|..+.-+|..-+++++|.+.++..++ +.-....|...+.++....+-++|-.-..+|++--|..
T Consensus 1520 FeRAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~- 1597 (1710)
T KOG1070|consen 1520 FERACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ- 1597 (1710)
T ss_pred HHHHHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh-
Confidence 9999887643 34788899999999999999999999997 44347788888889999999999999999999999983
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 005106 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (714)
Q Consensus 547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~ 626 (714)
.+++...+.. ++-.+.....+ .-..|+--|.-.|.-.++|.-....-.+.|..+-+...
T Consensus 1598 ----------------eHv~~IskfA---qLEFk~GDaeR--GRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1598 ----------------EHVEFISKFA---QLEFKYGDAER--GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred ----------------hhHHHHHHHH---HHHhhcCCchh--hHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence 3455555553 44444333333 46789999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChh-HHHHHHHHHHhcCCHH
Q 005106 627 LQLARQHAASDHE-RLVYEGWILYDTSHCE 655 (714)
Q Consensus 627 ~~~Al~l~P~~~e-a~~~~G~~ly~~G~~e 655 (714)
|+|++.+.=.=.. -.++.=|+-|...+=+
T Consensus 1657 feRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1657 FERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999988644333 3455566666654333
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.52 Score=50.92 Aligned_cols=171 Identities=12% Similarity=0.057 Sum_probs=108.7
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch-hh
Q 005106 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR-MF 548 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-----~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~-~~ 548 (714)
.......|...+.+....|+++-|...+.++..+++ .+......+.++-..|+-.+|+...+..+.-.+... ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 777788999999999999999999999999998763 244445677888899999999999999888322210 00
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc------CChHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL------NCPEA 622 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l------g~~ee 622 (714)
........ +.+. . ++. ...-..--......+.++..+|.-...+ +..++
T Consensus 222 ~~~~~~~~--~~~~----~----------~~~---------~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~ 276 (352)
T PF02259_consen 222 ISNAELKS--GLLE----S----------LEV---------ISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDE 276 (352)
T ss_pred ccHHHHhh--cccc----c----------ccc---------ccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 00000000 0000 0 000 0000000001111235566677777777 88888
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhcCCC
Q 005106 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHC-----------------EEGLRKAEESIQMKRS 670 (714)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~-----------------eeAl~~ye~Ai~i~~~ 670 (714)
++..|+.|+.++|+...+++..|..+...-.. ..|+..|=+|+.+.+.
T Consensus 277 ~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 277 ILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999998888888888776655222 2366666666666555
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.94 Score=48.00 Aligned_cols=206 Identities=12% Similarity=0.007 Sum_probs=125.0
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHH
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED 467 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d 467 (714)
..+......+.+..|...|.++-..+...+...+|..+..-... .....+|+..
T Consensus 46 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv--------------------------~~~~~~A~~~ 99 (292)
T COG0790 46 LNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGV--------------------------SRDKTKAADW 99 (292)
T ss_pred cccccccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCc--------------------------cccHHHHHHH
Confidence 34455566778888888888876654444444444443321111 1112555555
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 468 LDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKL-AL-ECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 468 ~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P-~~-~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
|. ...+..++.+.+++|..|.. ..++.+|..-|++|.+..- .. ...+..+..|..-+ .+ ...
T Consensus 100 ~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~---------~~~ 167 (292)
T COG0790 100 YR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA---------LAV 167 (292)
T ss_pred HH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh---------hcc
Confidence 55 33445666777777777776 4477888888888886632 21 22333444333221 00 000
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH----c
Q 005106 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----L 617 (714)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~----l 617 (714)
+.+ ... |+..+.+|-+.. ++.+.++.|.++.. -
T Consensus 168 ~~~-----------------------~~~------------------A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 168 AYD-----------------------DKK------------------ALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred cHH-----------------------HHh------------------HHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence 000 001 234455555544 77788888877755 3
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhcCCCHHHHHHH
Q 005106 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS---------------HCEEGLRKAEESIQMKRSFEAFFLK 677 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G---------------~~eeAl~~ye~Ai~i~~~~~a~~~~ 677 (714)
.++++|..+|++|-+... ..+.++.| ++|..| +...|...+.++....+...-.-++
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 477899999999999997 89999999 888877 7788888888888776666544444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.5 Score=48.97 Aligned_cols=161 Identities=14% Similarity=-0.007 Sum_probs=83.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhhhhhHHHH
Q 005106 485 RASSLMTKQNVEAALAEINRILGFK-----LALE-CLELRFCFFLALEDYQAALCDVQAILTLSPDY---RMFEGRVAAS 555 (714)
Q Consensus 485 rg~~l~~l~r~~eAl~~~~kAL~l~-----P~~~-~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~---~~~~~~~~a~ 555 (714)
-|..+.++..+.|+...|+||..+. |++. ...-++.=..+.-+.++|++-|++++.+=-+. .|++. ..
T Consensus 77 aamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e---l~ 153 (308)
T KOG1585|consen 77 AAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE---LY 153 (308)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH---HH
Confidence 3445566666666666666666652 3321 12234444556667788888888877643222 12111 11
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh--
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-- 633 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l-- 633 (714)
...+.+.-.++.+++|.. .+.+ .-....-+..-|..-.++...-++++-.+++..|..+|+..-.+
T Consensus 154 gk~sr~lVrl~kf~Eaa~---a~lK---------e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAAT---AFLK---------EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred HHhhhHhhhhHHhhHHHH---HHHH---------hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 222223333444444421 0001 11222333333444455555555555566889999999885543
Q ss_pred --CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 634 --AASDHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 634 --~P~~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
.|.+..++-++ .--|+.|+.|+.-...
T Consensus 222 f~~sed~r~lenL-L~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 222 FLKSEDSRSLENL-LTAYDEGDIEEIKKVL 250 (308)
T ss_pred ccChHHHHHHHHH-HHHhccCCHHHHHHHH
Confidence 34444444443 3357888888765443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.3 Score=56.88 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=41.2
Q ss_pred HHHcCChHHHHHH------HHHHHH-----hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 614 LLRLNCPEAAMRS------LQLARQ-----HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 614 L~~lg~~eeAl~~------~~~Al~-----l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
|-+.|-.++|+.. ++-|.. ..-..++.|..++.-|-+.|+|++|-..|-+||+++-
T Consensus 960 lnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 960 LNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred HHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 4446666666542 222322 2345788999999999999999999999999999873
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.36 Score=53.30 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCchhh-hhhHHHHHHHHHHHHhhhhhhH
Q 005106 495 VEAALAEINRILGFKLA-LECLELRFCFFLALE--DYQAALCDVQAILTLSPDYRMF-EGRVAASQLHMLVREHIDNWTI 570 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg--d~e~Al~d~~~al~L~P~~~~~-~~~~~a~~~~~~l~~~~~~~~~ 570 (714)
.++-+....-+|..+|+ +.+|+.|.|++...+ ++..=++-+++++++||.+-.. .=|.-..... +.
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~----------~~ 160 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA----------ER 160 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHH----------hc
Confidence 44555555556666664 556666666655544 3566666666666666655221 1011111100 00
Q ss_pred HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH------cCC------hHHHHHHHHHHHHhCCCCh
Q 005106 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR------LNC------PEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 571 A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~------lg~------~eeAl~~~~~Al~l~P~~~ 638 (714)
. ..+..+-+...+.+|..++.|-.+|++|..+|-. -|. ...-+.....|+--+|+|.
T Consensus 161 ~-----------~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~Dq 229 (421)
T KOG0529|consen 161 S-----------RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQ 229 (421)
T ss_pred c-----------cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccc
Confidence 0 0011123667899999999999999999999884 231 2345677889999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCCHH--HHHHHHHHhhccCCCCCchh
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEES----IQMKRSFE--AFFLKAYALADSSQDSSCSS 692 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~A----i~i~~~~~--a~~~~~~~~~~~~~~~~~~~ 692 (714)
.+++|.=|.+-..-+.+ .|..+ +++.=++. -++-....+.-+.++.|...
T Consensus 230 S~WfY~rWLl~~~~~~~----~~~~S~s~~ls~~~~~p~~~~l~~e~~~v~~~i~~E~~~ 285 (421)
T KOG0529|consen 230 SCWFYHRWLLGRGMRRE----CYIVSHSALLSESFSEPLIKYLRSEIGLVQSTIGSEFET 285 (421)
T ss_pred ceeeehHHhhccccccc----ccccccccccccccCCccHHHHHHHhhhhhhhhhhhccc
Confidence 99999888887754444 33333 33332222 44444555554445555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.14 Score=53.44 Aligned_cols=157 Identities=11% Similarity=0.008 Sum_probs=120.6
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHhc-CC
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQERSLY-CE 460 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~-----~~~ay~~rg~~-~~ 460 (714)
-.-|.++..-|++++|.+...+- ..-.+...--.+..+..+.+-|.....+...++-+ ++.+|.+...- ..
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchh
Confidence 34477888899999998877652 22233333345678888889998888888887643 78888887432 23
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALC-DVQAI 538 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~-d~~~a 538 (714)
..+|.-.|+.--+--|-.+...+..+.+.+.+||++||...+..||.-+++ ++.+.|.-.+-..+|.-.++.. ...+.
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 488988999999877777889999999999999999999999999999996 8988888776667776666655 45667
Q ss_pred HhhCCCch
Q 005106 539 LTLSPDYR 546 (714)
Q Consensus 539 l~L~P~~~ 546 (714)
...+|.++
T Consensus 269 k~~~p~h~ 276 (299)
T KOG3081|consen 269 KLSHPEHP 276 (299)
T ss_pred HhcCCcch
Confidence 77888874
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0078 Score=39.79 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
.+++++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666777777777777777777777776665
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=58.54 Aligned_cols=81 Identities=11% Similarity=-0.050 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHH-HH----H
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQM-KRSFE-AF----F 675 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i-~~~~~-a~----~ 675 (714)
..+..++|.++.++|+.+||++.++..++.+|. +-.++.|+-.+|+.+++|.++-+...|==.+ -|..+ -. .
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 345667888999999999999999999998875 5669999999999999999997776664334 34445 33 3
Q ss_pred HHHHHhhcc
Q 005106 676 LKAYALADS 684 (714)
Q Consensus 676 ~~~~~~~~~ 684 (714)
||+-+.+|+
T Consensus 339 LkaRav~d~ 347 (539)
T PF04184_consen 339 LKARAVGDK 347 (539)
T ss_pred HHHHhhccc
Confidence 555566675
|
The molecular function of this protein is uncertain. |
| >PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0074 Score=64.50 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=74.9
Q ss_pred eEEEeehhhhhcCCHHHHHhhcCCCCcC-CcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhChhh
Q 005106 191 EKIECDRQKFAALSAPFSAMLNGSFMES-LCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCER 269 (714)
Q Consensus 191 ~~f~aHr~VLAa~S~yF~amF~~~~~Es-~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~lL~aAd~~~v~~ 269 (714)
+.|.|.+..|-..=.||+..+.....++ ..+.|+|+- .-+..+|+=|++|+....-. +++.||..||.-+++++|+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 5799999999999999999996522222 224566653 36889999999999997766 99999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 005106 270 LKDACDRKLASLV 282 (714)
Q Consensus 270 L~~~C~~~L~~~l 282 (714)
|++.|-.|+...+
T Consensus 92 Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 92 LVEECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHHHhH
Confidence 9999999987665
|
This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.046 Score=57.92 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 481 PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 481 ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
-..|+=.+|++.++++.|+...++.+.++|+ +.-+.-||.+|.++|.+..|+.|++.-++..|+.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 4567778899999999999999999999996 777778999999999999999999999999999843
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.46 Score=56.24 Aligned_cols=55 Identities=9% Similarity=0.055 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
||.+-.++.-+|+.++|-++ .-...|--|-|.+|--+-..|++.+|+..|.||-+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~i-----A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARI-----AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhheeeEeeccCchHHHHH-----HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44444444455555555433 33455667888999999999999999998888754
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.3 Score=47.80 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCHH-HHHHHHHHh
Q 005106 638 HERLVYEGWILYDT------SHCEEGLRKAEESIQMKRSFE-AFFLKAYAL 681 (714)
Q Consensus 638 ~ea~~~~G~~ly~~------G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~ 681 (714)
+.++.-+|.....+ +.+++++..|.+|++++|+.+ +|+.-|...
T Consensus 252 a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 252 AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 45666777777777 999999999999999999888 887766544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.039 Score=58.47 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 647 (714)
|+.+.+++|.++|.++.-+--||.++.++||+..|..+++.-++..|+++.+..-+-.+
T Consensus 200 AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 200 ALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 38889999999999998888899999999999999999999999999988876655444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.17 Score=57.94 Aligned_cols=116 Identities=15% Similarity=0.002 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcCCHHHHHH
Q 005106 429 GHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTL----SYPYMYRASSLMTKQNVEAALA 500 (714)
Q Consensus 429 G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~----~~ay~~rg~~l~~l~r~~eAl~ 500 (714)
++...|.+.+......+|+.+..+..+|++ ++.++|++.|++|++..... ...+..+|..++-++++++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345566666666667777766666666553 34477777777776544333 3456778999999999999999
Q ss_pred HHHHHHhcCCCHH--HHHHHHHHHHhcCCH-------HHHHHHHHHHHhhCCC
Q 005106 501 EINRILGFKLALE--CLELRFCFFLALEDY-------QAALCDVQAILTLSPD 544 (714)
Q Consensus 501 ~~~kAL~l~P~~~--~~~~R~~~~~~lgd~-------e~Al~d~~~al~L~P~ 544 (714)
.|.+.++.+.-.. ..+..|.++..+|+. ++|...|.++..+-..
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999998776433 335578899999999 8888888888776553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.036 Score=43.98 Aligned_cols=46 Identities=28% Similarity=0.429 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh
Q 005106 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH 564 (714)
Q Consensus 513 ~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~ 564 (714)
++++..+..+.++|+|++|.+..+++++++|+|. .+..+...+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~------Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR------QAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHH
Confidence 4678889999999999999999999999999983 355555444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.18 Score=53.56 Aligned_cols=123 Identities=18% Similarity=0.043 Sum_probs=89.7
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHH-
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR- 464 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eA- 464 (714)
.-+.-..+.|++.+|...|..|+... ...+..++++++...|+.+.|...+.. +...-.......-+..+.....|
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~-lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA-LPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh-CcccchhhHHHHHHHHHHHHHHHh
Confidence 44556678899999999999999884 455778899999999999998776653 22211111111111111111222
Q ss_pred ----HHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 465 ----WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 465 ----l~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
+.++.+.+.-||++..+-+.+|..+...||+++|++.+=..+.-+-+
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999999999999888877654
|
|
| >smart00512 Skp1 Found in Skp1 protein family | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.034 Score=50.18 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=60.6
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcC-CcceEEeCCCCCCHHHHHHHHHhhccCCCC-------------
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMES-LCEDIDLSENNISPSGLRIISDFSVTGSLN------------- 248 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es-~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~------------- 248 (714)
|+|+- +|.+|.+.+.+. ..|..++.|+.+.-.+. ....|.++ +|+..+|+.+++|++...-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 56655 788999999966 68999999997643222 22578888 59999999999999854211
Q ss_pred -----CCCHHHHHHHHHHHhhhCh
Q 005106 249 -----GVTPNLLLEILIFANKFCC 267 (714)
Q Consensus 249 -----~i~~~~v~~lL~aAd~~~v 267 (714)
.++.+.+.+|+.||+++++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0445678899999998865
|
Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.73 Score=52.89 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-----LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-----~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
+.|.+.++...+.-|+.+......|-++...|+.++|+..|++++.-... .-+++-++|++.-++||++|...|.
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 55666667777777777777777777777777777777777777743332 1223446677777777777777666
Q ss_pred HHHhhC
Q 005106 537 AILTLS 542 (714)
Q Consensus 537 ~al~L~ 542 (714)
+..+.+
T Consensus 330 ~L~~~s 335 (468)
T PF10300_consen 330 RLLKES 335 (468)
T ss_pred HHHhcc
Confidence 666644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.011 Score=40.91 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
+|++++|++++.+|++++|+..|++.++.-|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 57888888888888888888888888887775
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.22 Score=46.06 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGF-------KLA-LECL----ELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-------~P~-~~~~----~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
+..|..++.++..+|+|+|++...++||.+ +-+ -..| ++|+.++..+|+.++|+..|+.+-+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 467788999999999999999988888864 343 2223 56889999999999999999998763
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.64 E-value=3.7 Score=43.61 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
+-.+|+.|...|..++|++|...|+-|+
T Consensus 246 ~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 246 HTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4568999999999999999999999765
|
It is also involved in sporulation []. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.021 Score=37.59 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
+.+|+++|.++..+|++++|...++++++++|++
T Consensus 1 ~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 3578999999999999999999999999999864
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.14 Score=54.97 Aligned_cols=191 Identities=16% Similarity=0.100 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
+|||..=.-...|-|+.++++.-.+..+...-|...=+..=-..|-+.-+-....+|+. .++++.-+++|...
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~l-------I~eg~all~rA~~~ 285 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRAL-------IDEGLALLDRALAS 285 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHH-------HHHHHHHHHHHHHc
Confidence 88888777788999999999988888877555433211111111111111112334444 35666677777665
Q ss_pred C-CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 542 S-PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 542 ~-P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
. |.- ++++..+.. ||...- ...-.|-..+.-+.++|+.-..++..-.|++.++.+.-=+
T Consensus 286 ~~pGP---------YqlqAAIaa---------~HA~a~--~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 286 RRPGP---------YQLQAAIAA---------LHARAR--RAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGP 345 (415)
T ss_pred CCCCh---------HHHHHHHHH---------HHHhhc--ccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhH
Confidence 4 332 122211111 111110 0011222245556667777666788888999999999999
Q ss_pred HHHHHHHHHHHHh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 005106 621 EAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAY 679 (714)
Q Consensus 621 eeAl~~~~~Al~l--~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~ 679 (714)
+.++...+...+- -.+++..|-.+|-.|-++|+.+||-..|++||++-++-. .=|++..
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999999887776 567888999999999999999999999999999988876 5555544
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=5.8 Score=45.00 Aligned_cols=193 Identities=15% Similarity=0.070 Sum_probs=121.1
Q ss_pred hccchHHHHHHHHHHHhc----cchh------h------HhhHHHHHHHhCCHHHHHHHHHHHHhc---CCC-------c
Q 005106 395 LRKEYDEAEHLFEAAVNA----GHIY------S------IAGLARLGYIKGHKLWAYEKLNSVISS---VTP-------L 448 (714)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~----~~~~------a------~~~lg~~~~~~G~~~~A~~~~~~aI~~---~p~-------~ 448 (714)
..|-|++|+++=++||.. +..+ . +-.+.-+..-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 457788888888888765 1111 1 123444666789999998776655543 222 3
Q ss_pred HHHHHHHHhcC----ChhHHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC------H--
Q 005106 449 GWMYQERSLYC----EGDKRWEDLDKATALDPT---LSYPYMYRASSLMTKQNVEAALAEINRILG-FKLA------L-- 512 (714)
Q Consensus 449 ~~ay~~rg~~~----~~~eAl~d~~kAi~LdP~---~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~-l~P~------~-- 512 (714)
+..++-+|.|+ .+++|-..|..|+.+--. -+..-.|+|.+|.+.|+- +++-++++ +.|. .
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~----ed~y~~ld~i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDA----EDLYKALDLIGPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccH----HHHHHHHHhcCCCCCCcchHHH
Confidence 45556667764 348888888777765432 245556688888876653 23444443 2332 1
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 513 ---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 513 ---~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
..++.+|.+...++++.||.+-.+..++.. +.+-..|..+.
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~---------------------------------- 486 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTAC---------------------------------- 486 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHH----------------------------------
Confidence 124556777777888888888888877776 32222222111
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 643 (714)
...-+|.+.+-+|+..|++...+-|+.+...-+|..+.
T Consensus 487 ----------------~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 487 ----------------SLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred ----------------HHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Confidence 23346778888899999999999999988777766544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.16 Score=54.57 Aligned_cols=147 Identities=11% Similarity=-0.011 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCHHHHH-HHH---HHHHhcCCHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-KLALECLE-LRF---CFFLALEDYQAALCDVQ 536 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-~P~~~~~~-~R~---~~~~~lgd~e~Al~d~~ 536 (714)
-+|-...+|.+.--|++--++..--.++.-.|+...-...++|+|-. +|+..++. ..| ..+.+.|=|++|..
T Consensus 120 h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk--- 196 (491)
T KOG2610|consen 120 HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK--- 196 (491)
T ss_pred cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH---
Confidence 55656666666666666666666666666666666666666666655 55533332 222 23445554444444
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
.-++|++++|.+..+...++.+|..
T Consensus 197 -------------------------------------------------------~A~ralqiN~~D~Wa~Ha~aHVlem 221 (491)
T KOG2610|consen 197 -------------------------------------------------------QADRALQINRFDCWASHAKAHVLEM 221 (491)
T ss_pred -------------------------------------------------------HHHhhccCCCcchHHHHHHHHHHHh
Confidence 2466677777777899999999999
Q ss_pred cCChHHHHHHHHHHHHh--CCCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 617 LNCPEAAMRSLQLARQH--AASDHER--LVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l--~P~~~ea--~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.||++|+.+-..+-=.. +..---. ++.-+..+...++|+.|+..|++-|-
T Consensus 222 ~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 222 NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence 99999999887653211 2222222 33444555666999999999999874
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.026 Score=40.67 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 640 RLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 640 a~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
++.++|.++..+|++++|+..|++|+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999977653
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.091 Score=47.97 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=48.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcH---HHHHHHHhcCC---------------hhHHHHHHHHHHhcCCCChHHHH
Q 005106 422 ARLGYIKGHKLWAYEKLNSVISSVTPLG---WMYQERSLYCE---------------GDKRWEDLDKATALDPTLSYPYM 483 (714)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~p~~~---~ay~~rg~~~~---------------~~eAl~d~~kAi~LdP~~~~ay~ 483 (714)
+.-++.+|++.+|++.++..|..+++.. ..+..+|..+. .-.+++.|.+++.|.|+.+...+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 3445555666666666666666555433 22223332210 04566677777777777766666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 484 YRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 484 ~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
.+|.=+---.-|++++...+++|.+
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6666555555566666666666654
|
|
| >KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.063 Score=54.26 Aligned_cols=92 Identities=20% Similarity=0.169 Sum_probs=76.9
Q ss_pred ccEEEEEcCeEEEeehhhhhcCCH--HHHHhhcCC---CCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHH
Q 005106 182 RNVVFRIHEEKIECDRQKFAALSA--PFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (714)
Q Consensus 182 ~DV~l~v~~~~f~aHr~VLAa~S~--yF~amF~~~---~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~ 256 (714)
+=|.+.+||+.|-.-+--|.-+-| -.-+||.+. -+|+.+.-+-|. -+|.-|+.+|+|+..|.+...+.-++.
T Consensus 9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lID---Rsp~yFepIlNyLr~Gq~~~~s~i~~l 85 (302)
T KOG1665|consen 9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLID---RSPKYFEPILNYLRDGQIPSLSDIDCL 85 (302)
T ss_pred hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEc---cCchhhHHHHHHHhcCceeecCCccHH
Confidence 458899999999888877777765 678899873 245566667776 799999999999999999866777899
Q ss_pred HHHHHHhhhChhhHHHHHHH
Q 005106 257 EILIFANKFCCERLKDACDR 276 (714)
Q Consensus 257 ~lL~aAd~~~v~~L~~~C~~ 276 (714)
.+|+.|++|++-.|++.-+.
T Consensus 86 gvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 86 GVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHhhHHhhHhHHhHHhh
Confidence 99999999999999987776
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.13 Score=45.33 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH--HHHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 005106 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECLEL-RFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 463 eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~--~~~~~-R~~~~~~lgd~e~Al~d~~~al 539 (714)
..++.++++++.+|++..+.+.+|..++..|++++|++.+-.+++-++++ +.... .-.++..+|.-+.....|++-+
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999998864 32222 2346667776666666665543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.1 Score=45.14 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=42.4
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHH--HHHHHHHH
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECL--ELRFCFFL 523 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~--~~~~--~~R~~~~~ 523 (714)
.||-|.+.-......+|-..|.+++..- ..+.. +.+....+-+.-+|. +..+ .-.+-.+.
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~---------------~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~v 100 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAV---------------QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEV 100 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 3555555544434456666666666421 12222 444555555554543 2222 12445677
Q ss_pred hcCCHHHHHHHHHHHHhhC
Q 005106 524 ALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 524 ~lgd~e~Al~d~~~al~L~ 542 (714)
+.|++++|+.-++.++..-
T Consensus 101 e~~~~d~A~aqL~~~l~~t 119 (207)
T COG2976 101 EANNLDKAEAQLKQALAQT 119 (207)
T ss_pred hhccHHHHHHHHHHHHccc
Confidence 7788888888777777543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.05 E-value=11 Score=46.40 Aligned_cols=188 Identities=13% Similarity=-0.003 Sum_probs=117.9
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCchhhhhh-HH
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLS--PDYRMFEGR-VA 553 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~--P~~~~~~~~-~~ 553 (714)
+-+..|..+|.+..+.|+..+||..|=||= +|+ .|..--.+-...|.|++-++...-|-+-- |.-...... -+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikad--Dps--~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPS--NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 346788999999999999999999998865 553 33444455677888999888888776632 321100000 00
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
-...++.++....-.+-|+ .-+.+|+.-+-+-++|...+.-. ..-|-.++..|..+|.++.|....|+|-..
T Consensus 1178 kt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~-------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN-------VSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred HhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 0111222333333333343 23455554444545444444433 344888999999999999999999887443
Q ss_pred CC-------------------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHH
Q 005106 634 AA-------------------------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 676 (714)
Q Consensus 634 ~P-------------------------~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~ 676 (714)
.. -.++-+--+-..+.+-|.|+|-+...|-++.+.|---.+|-
T Consensus 1250 ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfT 1317 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFT 1317 (1666)
T ss_pred hHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHH
Confidence 22 12333333444456679999999999999999988775554
|
|
| >KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.064 Score=59.07 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=70.3
Q ss_pred EEEEEcCeEEEeehhhhhcCC--HHHHHhhcCCCCcCCcce--EEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALS--APFSAMLNGSFMESLCED--IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S--~yF~amF~~~~~Es~~~~--I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~lL 259 (714)
|.|.|||+.|.-.+.-|+... .+|-++|++.+.-.+... |-|. =+|+.|..+|+|+.||.++ ++.-....++
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 789999999999999997776 599999987764333333 5555 6899999999999999999 7554444444
Q ss_pred H-HHhhhChhhHHH---HHHHH
Q 005106 260 I-FANKFCCERLKD---ACDRK 277 (714)
Q Consensus 260 ~-aAd~~~v~~L~~---~C~~~ 277 (714)
. =|.+|+++.+.+ .|+.-
T Consensus 89 hdEA~fYGl~~llrrl~~~~~~ 110 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLRRLTLCEEL 110 (465)
T ss_pred hhhhhhcCcHHHHHHhhcCccc
Confidence 4 899999999886 45443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.03 E-value=9 Score=45.47 Aligned_cols=178 Identities=11% Similarity=-0.022 Sum_probs=102.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh-hCCC
Q 005106 478 LSYPYMYRASSLMTKQNVEAALAEIN--------RILGFKLALECL----ELRFCFFLALEDYQAALCDVQAILT-LSPD 544 (714)
Q Consensus 478 ~~~ay~~rg~~l~~l~r~~eAl~~~~--------kAL~l~P~~~~~----~~R~~~~~~lgd~e~Al~d~~~al~-L~P~ 544 (714)
.+..++-.|..++..|+.+.|+..|. .+....+..+.+ .|+.+++...+.-..-..+.+.+++ ++|.
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~ 482 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPL 482 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcc
Confidence 46778889999999999999999998 555555544432 4566777766654444435666666 6664
Q ss_pred ch---hhhhhHHHHHHHHHHHHhhhh-hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 545 YR---MFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 545 ~~---~~~~~~~a~~~~~~l~~~~~~-~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
.. ..+.+.+.......+...... ..++.- .+-+ ++..+.+++...---.-+.+-.|..+. .|..
T Consensus 483 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~--~l~~---------~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~ 550 (608)
T PF10345_consen 483 CSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKR--HLQE---------ALKMANNKLGNSQLLAILLNLMGHRLF-EGDV 550 (608)
T ss_pred ccCCccHHHHHHHHHHHHHHhhCCccccHHHHH--HHHH---------HHHHHHHhhccchHHHHHHHHHHHHHH-cCCH
Confidence 21 122233222222111111100 111110 0001 122222233333333344566666666 7888
Q ss_pred HHHHHHHHHHHHhCCCC---hhHHH---HHHHH---HHhcCCHHHHHHHHHHHHhc
Q 005106 621 EAAMRSLQLARQHAASD---HERLV---YEGWI---LYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~~---~ea~~---~~G~~---ly~~G~~eeAl~~ye~Ai~i 667 (714)
+|......+|+...+.. ...+| +.|.+ +-..|+.++|-...++...+
T Consensus 551 ~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 551 GEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 88888888888776665 88888 44443 45679999998888776543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.087 Score=59.38 Aligned_cols=83 Identities=19% Similarity=0.121 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK---QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l---~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
..|+.+|.+|+.--|.....|.||+.+++.. |..-.|+.|.-.|+++||. ..+++.++.++.+++++.+|+.+-.+
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 4455555555555555555555555555543 2333455555555555554 33344444455555555555555555
Q ss_pred HHhhCCC
Q 005106 538 ILTLSPD 544 (714)
Q Consensus 538 al~L~P~ 544 (714)
+....|.
T Consensus 471 lq~~~Pt 477 (758)
T KOG1310|consen 471 LQMSFPT 477 (758)
T ss_pred HhhcCch
Confidence 5555553
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.21 Score=44.05 Aligned_cols=76 Identities=9% Similarity=-0.074 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~--~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
++-++++++.+|++.++.+.+|..+...|++++|++.+-.+++.+|++ ..+.-.+=-++--+|.-+.-...|+|-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 667888999999999999999999999999999999999999998876 4454455555666677676777777654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.39 Score=51.24 Aligned_cols=84 Identities=10% Similarity=0.123 Sum_probs=68.6
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-ERLVYEGWILYDT--SHCEEGLRKAEESI 665 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~-ea~~~~G~~ly~~--G~~eeAl~~ye~Ai 665 (714)
|..+|++++...|.++++|.....-|..+|+.+.|...|++++..-|... -...+.-|+-|.. |+.+.....++|+.
T Consensus 55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 55 ARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888999999999999999999999999999999999988877 5566677776654 99999999999999
Q ss_pred hcCCCHH
Q 005106 666 QMKRSFE 672 (714)
Q Consensus 666 ~i~~~~~ 672 (714)
++-|+..
T Consensus 135 ~~~~~~~ 141 (280)
T PF05843_consen 135 ELFPEDN 141 (280)
T ss_dssp HHTTTS-
T ss_pred HHhhhhh
Confidence 9987744
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.82 E-value=9.4 Score=46.24 Aligned_cols=204 Identities=12% Similarity=-0.013 Sum_probs=137.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------HH
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPT---------LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA------LE 513 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~---------~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~------~~ 513 (714)
+|..+-...+ .+|-...+++-.--|. .+..-.-+|.+....|++++|++..++++..=|. ..
T Consensus 422 aW~~~s~~r~---~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 422 AWLLASQHRL---AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHccCh---HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 4444444444 6666666655554444 2455566999999999999999999999987663 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHH
Q 005106 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (714)
Q Consensus 514 ~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~ 593 (714)
++.+.+.+..-.|++++|....+.+.++.-.|-.++--+-+......+.....+...++.. ... --..
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~---~~~---------~~~~ 566 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQE---KAF---------NLIR 566 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHH---------HHHH
Confidence 3455778899999999999999999998766544333344444444455555533333210 000 2246
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChhH-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------DHER-LVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 594 ~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------~~ea-~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.|-+...|.+.-+.--++.++..-.|.+++..-.+..+++--. ...+ +..++.+.+..|++|+|....++.-.
T Consensus 567 ~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 567 EQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6777777887777666666666666688888888877766432 2222 34788889999999999998888777
Q ss_pred c
Q 005106 667 M 667 (714)
Q Consensus 667 i 667 (714)
+
T Consensus 647 l 647 (894)
T COG2909 647 L 647 (894)
T ss_pred H
Confidence 5
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.9 Score=47.17 Aligned_cols=134 Identities=14% Similarity=-0.011 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc----CCCcHHHHHHHH
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS----VTPLGWMYQERS 456 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~----~p~~~~ay~~rg 456 (714)
.-+-++.+.|...-....+.|+..+|++|..+ |...|..+.|--.+.+|-.. +|+.+--+++|
T Consensus 69 hAAKayEqaamLake~~klsEvvdl~eKAs~l------------Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqr- 135 (308)
T KOG1585|consen 69 HAAKAYEQAAMLAKELSKLSEVVDLYEKASEL------------YVECGSPDTAAMALEKAAKALENVKPDDALQLYQR- 135 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------------HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHH-
Confidence 33455666777777777888888888887665 44445555544444433332 34333333333
Q ss_pred hcCChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CH-HHHHHHHHHHH
Q 005106 457 LYCEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKL------AL-ECLELRFCFFL 523 (714)
Q Consensus 457 ~~~~~~eAl~d~~kAi~LdP~~------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P------~~-~~~~~R~~~~~ 523 (714)
++++=-.. .+-|...+.+|.+++++.||-..|.|-..+.- +. ..+...-.+|+
T Consensus 136 --------------alavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 136 --------------ALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred --------------HHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 33221111 23456678899999999999888877654432 21 12233445788
Q ss_pred hcCCHHHHHHHHHHHHhh
Q 005106 524 ALEDYQAALCDVQAILTL 541 (714)
Q Consensus 524 ~lgd~e~Al~d~~~al~L 541 (714)
...||..|..+|+..-++
T Consensus 202 ~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hHHHHHHHHHHhcchhcC
Confidence 888999999999986665
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.031 Score=40.31 Aligned_cols=33 Identities=12% Similarity=-0.058 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
+|.++|.++.++|++++|+..|++|+.+.++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 578999999999999999999999776654443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.091 Score=47.98 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=74.0
Q ss_pred ccccchHHHHHHHHHhCCCCh---hHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005106 584 VDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLNC-----------PEAAMRSLQLARQHAASDHERLVYEGWILY 649 (714)
Q Consensus 584 ~~d~~al~~~~qaL~l~P~~~---~~~~~~g~~L~~lg~-----------~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 649 (714)
-+-+.||.+++..+...+++. ..+.-+|.+..++.. .-.|+++|+++..+.|+.+..++.+|.-+-
T Consensus 10 GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~ 89 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLG 89 (111)
T ss_pred cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhh
Confidence 345557999999999999988 678889999977432 347999999999999999999999999888
Q ss_pred hcCCHHHHHHHHHHHHhc-CC
Q 005106 650 DTSHCEEGLRKAEESIQM-KR 669 (714)
Q Consensus 650 ~~G~~eeAl~~ye~Ai~i-~~ 669 (714)
-.-.|++++...+|++++ +|
T Consensus 90 s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 90 SVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred hHHHHHHHHHHHHHHhcccCC
Confidence 888899999999999997 44
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.085 Score=55.96 Aligned_cols=72 Identities=14% Similarity=0.005 Sum_probs=62.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYA 680 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~ 680 (714)
+.+.-..+.|+.|.|+..+.-|+.++|++++++.-.|...---.+.-+|-+.|-||+.|.|+.. |--||+-+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3444457889999999999999999999999999999999999999999999999999999887 77777654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.059 Score=37.17 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
++++++|.++.++|++++|++.+++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999985
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.3 Score=48.30 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
.+.+....+...|..|-|+..++..++++=
T Consensus 156 v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 156 VFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 355666677778899999999998888874
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.40 E-value=14 Score=44.75 Aligned_cols=229 Identities=16% Similarity=0.087 Sum_probs=151.3
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHh-hh-----hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch-------h
Q 005106 350 LLSEVAMNLDPRSDKTVCFLERLLES-AE-----TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-------Y 416 (714)
Q Consensus 350 ~l~~V~~d~~~rs~~~~~LLe~Lv~~-a~-----~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-------~ 416 (714)
+-.|.... ..|-..+..++.++-+. .. .....+...-..|.+...+|+.++|++.-+.|+..=+. -
T Consensus 420 l~aW~~~s-~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 420 LQAWLLAS-QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHH-ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 33444433 24666666677664432 21 12222344456899999999999999999999987222 2
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHH-------HHHhc--CChhHHHH-HHHHHHhcCCCChH
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVT------PLGWMYQ-------ERSLY--CEGDKRWE-DLDKATALDPTLSY 480 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p------~~~~ay~-------~rg~~--~~~~eAl~-d~~kAi~LdP~~~~ 480 (714)
+....|.+..-+|++++|...+..+-+... -..|+.. ++|.. ...+.+.. -+.+-+.-.|-..+
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 345578899999999999988887777622 1233333 33421 01122221 24455666788888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCH--HHH--HHHHHHHHhcCCHHHHHHHHHHHHhh--CCCchhhhh
Q 005106 481 PYMYRASSLMTKQNVEAALAEINRILGFK----LAL--ECL--ELRFCFFLALEDYQAALCDVQAILTL--SPDYRMFEG 550 (714)
Q Consensus 481 ay~~rg~~l~~l~r~~eAl~~~~kAL~l~----P~~--~~~--~~R~~~~~~lgd~e~Al~d~~~al~L--~P~~~~~~~ 550 (714)
+..-|+.++..--|+++|..+..+.+++- |.+ .++ ...+.+....||+++|..-.+....+ +++ ...+-
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~ 657 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVDY 657 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchH
Confidence 88999999999889999999999999873 322 222 25677899999999999999887664 444 33334
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 551 RVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
..++....-.+-....+.+.+.+|..-...
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 455666666666777788888777555443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.35 E-value=15 Score=43.70 Aligned_cols=304 Identities=18% Similarity=0.119 Sum_probs=184.3
Q ss_pred hhHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHhcc--chh------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 005106 377 ETDRQRLLAFHQLGCVRL-LRKEYDEAEHLFEAAVNAG--HIY------SIAGLARLGYIKGHKLWAYEKLNSVISSVTP 447 (714)
Q Consensus 377 ~~~lq~~~A~~~lG~~~~-~~g~y~eA~~~f~~AL~~~--~~~------a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~ 447 (714)
....+++.....+|.+++ ...++++|+.+.+|++.+. +.. +..-+++++.+.|... |....+++|+...+
T Consensus 53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 444567888899999988 7899999999999998873 211 2345688999999888 99999999997543
Q ss_pred ---cHHHHHHHH----h---cCChhHHHHHHHHHHhcC--CCChHHHH----HHHHHHHhcCCHHHHHHHHHHHHhc---
Q 005106 448 ---LGWMYQERS----L---YCEGDKRWEDLDKATALD--PTLSYPYM----YRASSLMTKQNVEAALAEINRILGF--- 508 (714)
Q Consensus 448 ---~~~ay~~rg----~---~~~~~eAl~d~~kAi~Ld--P~~~~ay~----~rg~~l~~l~r~~eAl~~~~kAL~l--- 508 (714)
.+|.|.-|= . .++...|++.+++...+. +.+...+. ..|.+....+..++++...++++..
T Consensus 132 ~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~ 211 (608)
T PF10345_consen 132 YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARS 211 (608)
T ss_pred cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence 566664441 1 146688898888888877 45544333 3678888889899999999988442
Q ss_pred ---CCC-----HHHHHH--HHHHHHhcCCHHHHHHHHHH---HHh---hCC-------C-----------------chh-
Q 005106 509 ---KLA-----LECLEL--RFCFFLALEDYQAALCDVQA---ILT---LSP-------D-----------------YRM- 547 (714)
Q Consensus 509 ---~P~-----~~~~~~--R~~~~~~lgd~e~Al~d~~~---al~---L~P-------~-----------------~~~- 547 (714)
+|+ ...+.. .-.++...|+++.+....++ .+. -.| + ...
T Consensus 212 ~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f 291 (608)
T PF10345_consen 212 LQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVF 291 (608)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEE
Confidence 232 233322 33567888887666554332 222 222 1 000
Q ss_pred -hhhhHHHHHH---HHH--------HHHhhhhhhHHHHHHhhhhccc-cccccchHHHHHHHHHhCCC----ChhHHHHH
Q 005106 548 -FEGRVAASQL---HML--------VREHIDNWTIADCWLQLYDRWS-SVDDIGSLSVIYQMLESDAP----KGVLYFRQ 610 (714)
Q Consensus 548 -~~~~~~a~~~---~~~--------l~~~~~~~~~A~~~~~l~~~~~-~~~d~~al~~~~qaL~l~P~----~~~~~~~~ 610 (714)
+.+......+ ... .....+.++++- +.-+.+. ..+... -..+..+.+..++ .-...+.+
T Consensus 292 ~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l---~~i~~~~~~~~~~~-~~sl~~~~~~~~~~~~l~~~~~~y~ 367 (608)
T PF10345_consen 292 SWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKAL---KQIEKLKIKSPSAP-SESLSEASERIQWLRYLQCYLLFYQ 367 (608)
T ss_pred eecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH---HHHHHhhccCCCCC-CcCHHHHHHhHHHHHHHHHHHHHHH
Confidence 1111111111 111 112233333331 1222211 000000 0011111111111 12345677
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC---------CChhHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCHHH
Q 005106 611 SLLLLRLNCPEAAMRSLQLARQHAA---------SDHERLVYEGWILYDTSHCEEGLRKAE--------ESIQMKRSFEA 673 (714)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P---------~~~ea~~~~G~~ly~~G~~eeAl~~ye--------~Ai~i~~~~~a 673 (714)
+.+..-+|++..|......+..... -.+..++-.|...-..|+.+.|...|. .+....+..|-
T Consensus 368 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El 447 (608)
T PF10345_consen 368 IWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFREL 447 (608)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHH
Confidence 7777889999889988887776532 257889999999999999999999997 66677777772
Q ss_pred H----HHHHHHhhccC
Q 005106 674 F----FLKAYALADSS 685 (714)
Q Consensus 674 ~----~~~~~~~~~~~ 685 (714)
+ .|..+.+-+.+
T Consensus 448 ~ila~LNl~~I~~~~~ 463 (608)
T PF10345_consen 448 YILAALNLAIILQYES 463 (608)
T ss_pred HHHHHHHHHHHhHhhc
Confidence 2 34555554433
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.066 Score=38.91 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
+.++.++|.++..+|++++|...+++|+++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 35789999999999999999999999998754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.12 Score=58.21 Aligned_cols=89 Identities=12% Similarity=-0.078 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLR---LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~---lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
++..|.+++..-|....++-|++.++.+ -|..-.|+++.-.|++++|...-||+++.-+|..++++.||++....+.
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 3778999999999999999999999988 6777889999999999999999999999999999999999999888888
Q ss_pred hcCCCHHHHHHH
Q 005106 666 QMKRSFEAFFLK 677 (714)
Q Consensus 666 ~i~~~~~a~~~~ 677 (714)
-..|+..|--++
T Consensus 473 ~~~Ptd~a~~~~ 484 (758)
T KOG1310|consen 473 MSFPTDVARQNF 484 (758)
T ss_pred hcCchhhhhhhh
Confidence 788855544433
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.97 Score=50.92 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHH---------hC---------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQ---------HA---------ASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~---------l~---------P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
-.+|+|+|-+.+++|++..+...|.+|++ +. ...-+.+||.|..++..|+--+|.+.+-+|.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 34689999999999999999999999997 12 2467999999999999999999999999999
Q ss_pred hcCCCHH-HHH---------HHHHHhhccCCCCCchhhHH
Q 005106 666 QMKRSFE-AFF---------LKAYALADSSQDSSCSSTVV 695 (714)
Q Consensus 666 ~i~~~~~-a~~---------~~~~~~~~~~~~~~~~~~~~ 695 (714)
..=.... -|. ++|-.+..+.--|+-|..++
T Consensus 363 ~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~ 402 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRV 402 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCccccccee
Confidence 8744333 554 44445555555555555554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.91 Score=48.41 Aligned_cols=84 Identities=11% Similarity=0.011 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE----CLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~----~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
+-|...|++++..-|.+...|..-..-+..+|+.+.|-..|++++..-|.-. .|......=...|+.+.....+++
T Consensus 53 ~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 53 KRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3366677777777788888888878888999999999999999998766533 333334466677999999999999
Q ss_pred HHhhCCCc
Q 005106 538 ILTLSPDY 545 (714)
Q Consensus 538 al~L~P~~ 545 (714)
+.++-|+.
T Consensus 133 ~~~~~~~~ 140 (280)
T PF05843_consen 133 AEELFPED 140 (280)
T ss_dssp HHHHTTTS
T ss_pred HHHHhhhh
Confidence 99998884
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.1 Score=51.65 Aligned_cols=88 Identities=16% Similarity=0.060 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHH-HHhcCCC-HHHHHHH------HHHHHhcCCHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR-ILGFKLA-LECLELR------FCFFLALEDYQAA 531 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~k-AL~l~P~-~~~~~~R------~~~~~~lgd~e~A 531 (714)
....+...+..++..||++..++.++|.++...|..-.|+.++.. +....|+ .+....+ +..+..+|+.++|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (620)
T COG3914 82 DSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEA 161 (620)
T ss_pred cchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHH
Confidence 336788888999999999999999999999999999999998888 8888885 4444444 7788999999999
Q ss_pred HHHHHHHHhhCCCchh
Q 005106 532 LCDVQAILTLSPDYRM 547 (714)
Q Consensus 532 l~d~~~al~L~P~~~~ 547 (714)
..+..++..+.|.++.
T Consensus 162 ~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 162 ELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHHHHHhhhhhhh
Confidence 9999999999999954
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.1 Score=51.50 Aligned_cols=52 Identities=12% Similarity=-0.094 Sum_probs=37.2
Q ss_pred HHHhCCCChhHHHHH------HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005106 596 MLESDAPKGVLYFRQ------SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (714)
Q Consensus 596 aL~l~P~~~~~~~~~------g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 649 (714)
+.+..|.+....+-+ |..+..+|+.+++.....++.++.|.+++ ...||+-.
T Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~--~~~~~~~~ 185 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR--VLGALMTA 185 (620)
T ss_pred HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh--hHhHHHHH
Confidence 455555555554444 77888899999999999999999999844 45555544
|
|
| >KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.29 Score=47.95 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=70.8
Q ss_pred cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCC--------------------
Q 005106 189 HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN-------------------- 248 (714)
Q Consensus 189 ~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~-------------------- 248 (714)
+|+.|.+-+.+ |-.|..+.+++...--......|.|+ +|+..+|..|++|++.-+-+
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 67778887765 47788888888653222222578888 59999999999999984421
Q ss_pred ----CCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 249 ----GVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 249 ----~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
.+..+++.+|+.||+++.++.|.+.|++.+..++.
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 03345789999999999999999999999998874
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.23 Score=50.88 Aligned_cols=74 Identities=16% Similarity=0.025 Sum_probs=42.7
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCC
Q 005106 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQD 687 (714)
Q Consensus 614 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~ 687 (714)
+.+-|+.+.|.+.|.+|+++.|..+.-++-+|..-.+.|+++.|.+.|++.++|+|... .=-+|=-++.+.-.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p 79 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETP 79 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCC
Confidence 34455666666666666666666666666666666666666666666666666666555 222333334444333
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.29 Score=38.79 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~ 642 (714)
.+.+|..+.++|++++|++..+.+++++|+|..|..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 445555555555555555555555555555555543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.21 E-value=2.9 Score=45.46 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=99.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005106 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (714)
Q Consensus 464 Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P 543 (714)
....|++.++-+|++..+|..+....-.+-....-. ....++ -.+..+.-|++|++-+|
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--------------~~~~~a-------~~E~klsilerAL~~np 62 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--------------KAERRA-------LAERKLSILERALKHNP 62 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--------------hhhHHH-------HHHHHHHHHHHHHHhCC
Confidence 456788999999999999988776554433211111 001111 14566778889999999
Q ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC-----
Q 005106 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN----- 618 (714)
Q Consensus 544 ~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg----- 618 (714)
++.. -+++.++...+.|+.-. -..-.++++..+|++..+| ++.+-..++
T Consensus 63 ~~~~--------L~l~~l~~~~~~~~~~~----------------l~~~we~~l~~~~~~~~LW--~~yL~~~q~~~~~f 116 (321)
T PF08424_consen 63 DSER--------LLLGYLEEGEKVWDSEK----------------LAKKWEELLFKNPGSPELW--REYLDFRQSNFASF 116 (321)
T ss_pred CCHH--------HHHHHHHHHHHhCCHHH----------------HHHHHHHHHHHCCCChHHH--HHHHHHHHHHhccC
Confidence 8732 22222233333332221 1346899999999999999 555666655
Q ss_pred ChHHHHHHHHHHHHhCCCC------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 619 CPEAAMRSLQLARQHAASD------------------HERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~------------------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
.+++-...|.++++.-..- .+.+..+..-+.+.|+.|.|++.+.-.++++
T Consensus 117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 3566777777777654432 2234445555778899999999999998864
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.28 Score=56.01 Aligned_cols=93 Identities=12% Similarity=0.127 Sum_probs=83.7
Q ss_pred ccccccccc-hHHHHHHHHHhCCCChh-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 005106 580 RWSSVDDIG-SLSVIYQMLESDAPKGV-LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 657 (714)
Q Consensus 580 ~~~~~~d~~-al~~~~qaL~l~P~~~~-~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA 657 (714)
.|..++... |.+|+.+|+-..|-..+ -..+++.++.+-|-.-.|-..+.++++++...+--++.+|..++.+.+.++|
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 355556655 78899999999997654 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHH
Q 005106 658 LRKAEESIQMKRSFE 672 (714)
Q Consensus 658 l~~ye~Ai~i~~~~~ 672 (714)
++.+++|+.+.|+..
T Consensus 696 ~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHHhcCCCCh
Confidence 999999999999875
|
|
| >PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.64 Score=37.89 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=43.5
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhcc
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT 244 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Yt 244 (714)
|+|+- +|+.|.+.+.+. -.|..++.||.+...+.. .|.++ +|+..+|+.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHHh
Confidence 56665 788999988865 589999999986433332 78998 5999999999999863
|
It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A .... |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.22 Score=51.04 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL 510 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P 510 (714)
+.|.+.|++|+++-|+.+.-|...|..-...|+++.|...|.+.++++|
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4555555555555555555555555555555555555555555555555
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.66 Score=48.90 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ 647 (714)
+.+.+|.|.++|.++.-+--+|.++.++||++-|+.++...+++-|+++++-.-++.+
T Consensus 201 l~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 201 LRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999998886655544
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=92.05 E-value=2.1 Score=46.34 Aligned_cols=125 Identities=19% Similarity=0.094 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcC-CCHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 005106 495 VEAALAEINRILGFK-LALECL-------ELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~-P~~~~~-------~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (714)
++|++.-++||+..+ |.+.-+ +.++. ....-||..-...|+....+.|.-..-.+|..+.........
T Consensus 272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~-~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~a--- 347 (415)
T COG4941 272 IDEGLALLDRALASRRPGPYQLQAAIAALHARAR-RAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAA--- 347 (415)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhc-ccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHh---
Confidence 577888888888764 443221 11111 445568899899999999999997655555544443221111
Q ss_pred hhhHHHHHHhhhhccccccccchHHHHHHHHHh--CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005106 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 644 (714)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l--~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (714)
+|+.++...+- =-+.-.+|--+|.+|.++|+.+||-..|++|+.+.++.+++.+-+
T Consensus 348 ----------------------gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 348 ----------------------GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred ----------------------HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 24444444433 223445677899999999999999999999999999999976655
Q ss_pred H
Q 005106 645 G 645 (714)
Q Consensus 645 G 645 (714)
+
T Consensus 406 ~ 406 (415)
T COG4941 406 Q 406 (415)
T ss_pred H
Confidence 4
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.56 Score=49.98 Aligned_cols=58 Identities=19% Similarity=0.062 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRF 519 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~ 519 (714)
++|...|+.|+.++|+++++....|...-+-++.-+|=..|-|||.+.|. .+++.+|+
T Consensus 133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 55555555555555555555555555555555555555555555555553 45555544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.29 Score=35.42 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
.++.++|.+|..+|++++|+..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778888888888888888888888765
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.88 Score=52.20 Aligned_cols=121 Identities=16% Similarity=0.059 Sum_probs=97.5
Q ss_pred HHHHHhcCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 502 INRILGFKLALECLELRF-CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 502 ~~kAL~l~P~~~~~~~R~-~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
+-.+++-+|..-.+++.+ .-....|+.-+|+.++..++-+.|+..
T Consensus 202 ~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~---------------------------------- 247 (886)
T KOG4507|consen 202 IHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHN---------------------------------- 247 (886)
T ss_pred HHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCccc----------------------------------
Confidence 345666666544445544 445678899999999999999888751
Q ss_pred cccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 581 ~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
.| ..+..+|.+|.++|+..+|--++-.|+...|.-++-++.+|.++..+|.|--.+..
T Consensus 248 ----kd------------------i~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ 305 (886)
T KOG4507|consen 248 ----KD------------------IALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLC 305 (886)
T ss_pred ----cc------------------chhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhh
Confidence 11 23456889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHH-HHHHHH
Q 005106 661 AEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 661 ye~Ai~i~~~~~-a~~~~~ 678 (714)
|..|....|+|+ +|=-|+
T Consensus 306 ydha~k~~p~f~q~~~q~~ 324 (886)
T KOG4507|consen 306 YDHALQARPGFEQAIKQRK 324 (886)
T ss_pred hhhhhccCcchhHHHHHHH
Confidence 999999999999 664443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.76 E-value=2.8 Score=42.50 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=64.8
Q ss_pred hhhhccccccccchHHHHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHh
Q 005106 576 QLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYD 650 (714)
Q Consensus 576 ~l~~~~~~~~d~~al~~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~ly~ 650 (714)
-+|-.|++.+|..|+..|-++-... -..+++.+.+|..+. ..+++.|+..+-+|+++.+.+ ++.+..++.+++.
T Consensus 112 llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 112 LLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 4677888888887777665543221 256777888887777 456777999999999998775 8999999999999
Q ss_pred cCCHHHHH
Q 005106 651 TSHCEEGL 658 (714)
Q Consensus 651 ~G~~eeAl 658 (714)
+|++++|.
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99999985
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=90.60 E-value=35 Score=38.73 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=50.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH---HHHHHHHHhh
Q 005106 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE---AFFLKAYALA 682 (714)
Q Consensus 614 L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~---a~~~~~~~~~ 682 (714)
|.-.|.+.++.-.-.=..+++| ++.++.-+|.+++...+|+|||..+.. +-|+.. +---||.+|-
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALC 539 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHH
Confidence 4556888888888888899999 899999999999999999999977653 334433 4444566553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.35 Score=32.25 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
.+++++|++++.+|+.++|.+.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4566777777777777777766653
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=89.98 E-value=1.2 Score=39.34 Aligned_cols=56 Identities=25% Similarity=0.209 Sum_probs=46.3
Q ss_pred HHcCChHHHHHHHHHHHHhCCCC---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 615 LRLNCPEAAMRSLQLARQHAASD---------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~---------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
.+.|++.+|++.+.+........ ..++.++|.+.+..|++++|+..+++||++-+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 56788999988777777665543 468899999999999999999999999998543
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.97 E-value=8.3 Score=42.97 Aligned_cols=178 Identities=11% Similarity=0.105 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
.++++.=.+.++-+|+....|+.|=.++.+..-.. +++|.-. +.-+++=+.....+++.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~----------~~~~~ek-----------~~~ld~eL~~~~~~L~~ 104 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA----------QLEPLEK-----------QALLDEELKYVESALKV 104 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh----------cCCHHHH-----------HHhhHHHHHHHHHHHHh
Confidence 77777777888899999999988777766432111 3344211 11345666777889999
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
+|+...+- .+..-.|..... .+++ -|..++++|+.||.|-++|..|=.+..+..+.
T Consensus 105 npksY~aW-----~hR~w~L~~~p~------------------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 105 NPKSYGAW-----HHRKWVLQKNPH------------------SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred CchhHHHH-----HHHHHHHHhCCC------------------chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 99864211 111111111111 1222 38899999999999999999998888775555
Q ss_pred ----HHHHHHHHHHHHhCCCChhHHHHHHHHHHh------cC------CHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 621 ----EAAMRSLQLARQHAASDHERLVYEGWILYD------TS------HCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 621 ----eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~------~G------~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
.+=++...+++.-++.|=.|+.||.+++-. .| .....+..=..||=-+|+.. +||..=+.|.-
T Consensus 162 ~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 162 RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 667888899999999999999999999883 35 36677888889999999998 99886665544
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.47 Score=34.97 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
+.|..+|.+-++.++|++|+.||.++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.64 E-value=2.8 Score=40.93 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 654 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ 654 (714)
...++..-.+.|+.+++-..-|.++...|++.+|++.++.+.+-.|..+.+---+++||+.+|+.
T Consensus 30 e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 30 EALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 44555555566666666666666666666666666666666666666666666666666666654
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=89.53 E-value=12 Score=41.54 Aligned_cols=156 Identities=16% Similarity=0.050 Sum_probs=100.7
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------c-----CCC-------HHHHHHHH---------
Q 005106 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG---------F-----KLA-------LECLELRF--------- 519 (714)
Q Consensus 470 kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~---------l-----~P~-------~~~~~~R~--------- 519 (714)
..+.-+|-+.+++..++.++..+|+++.|-+.++|||= + ++. +....||.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 34688999999999999999999999999999999862 2 211 01112332
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC-chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH
Q 005106 520 CFFLALEDYQAALCDVQAILTLSPD-YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (714)
Q Consensus 520 ~~~~~lgd~e~Al~d~~~al~L~P~-~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~ 598 (714)
..+.+.|-+.-|++..+-.+.|||. ++. . +.....-..-.-+++ +-+..+++.+... ...+.+.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~-g----~ll~ID~~ALrs~~y---~~Li~~~~~~~~~-------~~~~~~~ 175 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL-G----VLLFIDYYALRSRQY---QWLIDFSESPLAK-------CYRNWLS 175 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc-h----hHHHHHHHHHhcCCH---HHHHHHHHhHhhh-------hhhhhhh
Confidence 3588999999999999999999999 543 1 111111111111222 1112222221110 0111122
Q ss_pred hCCCChhHHHHHHHHHHHcCCh---------------HHHHHHHHHHHHhCCCChhHHHH
Q 005106 599 SDAPKGVLYFRQSLLLLRLNCP---------------EAAMRSLQLARQHAASDHERLVY 643 (714)
Q Consensus 599 l~P~~~~~~~~~g~~L~~lg~~---------------eeAl~~~~~Al~l~P~~~ea~~~ 643 (714)
. -|..-|..++++..+++. ++|-..+++|+..-|.-.-.+..
T Consensus 176 ~---lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 176 L---LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred h---CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 2 335678899999999999 89999999999999875554443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.01 E-value=1.4 Score=46.50 Aligned_cols=69 Identities=17% Similarity=0.038 Sum_probs=61.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
.=.++.+-++++.|.++.++.+.++|.+++-+.-+|.+++++|.+.-|+..++..++.=|+-. +=.+|+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 444677789999999999999999999999999999999999999999999999999988877 655555
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=88.36 E-value=8.1 Score=39.66 Aligned_cols=97 Identities=14% Similarity=0.060 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHHHhc------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHH
Q 005106 491 TKQNVEAALAEINRILGF------KLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVR 562 (714)
Q Consensus 491 ~l~r~~eAl~~~~kAL~l------~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~ 562 (714)
....+++|++.|.-||-. +|. ...+...+|+|..+|+.+.....+++|++.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~--------------------- 147 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF--------------------- 147 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH---------------------
Confidence 344577777777776642 222 122333579999999966666655555442
Q ss_pred HhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC--C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005106 563 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP--K----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (714)
Q Consensus 563 ~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~--~----~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~ 636 (714)
|.++++.... . ..+.+..|.+..++|++++|++.+.+.+...-.
T Consensus 148 ------------------------------y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 148 ------------------------------YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred ------------------------------HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 2333322211 1 235667888888888888888888888876655
Q ss_pred Ch
Q 005106 637 DH 638 (714)
Q Consensus 637 ~~ 638 (714)
+.
T Consensus 198 s~ 199 (214)
T PF09986_consen 198 SK 199 (214)
T ss_pred CC
Confidence 44
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.29 E-value=3.3 Score=47.08 Aligned_cols=83 Identities=4% Similarity=-0.023 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH-CEEGLRKAEESIQMK 668 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~-~eeAl~~ye~Ai~i~ 668 (714)
+-.|++|+...|+++.+|.+-..--.+-+-+.+--..|.+++...|++++.+.+-+.-+|.-+. ++.|-+.+-+++..+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 4478888888888888888776666666667778888888888888888888888888887777 888888888888888
Q ss_pred CCHH
Q 005106 669 RSFE 672 (714)
Q Consensus 669 ~~~~ 672 (714)
|+.+
T Consensus 171 pdsp 174 (568)
T KOG2396|consen 171 PDSP 174 (568)
T ss_pred CCCh
Confidence 8877
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.27 E-value=0.17 Score=54.80 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=63.8
Q ss_pred ccEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 005106 182 RNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILI 260 (714)
Q Consensus 182 ~DV~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~lL~ 260 (714)
.|++|.+ +|+.|-|||..|+++|.+|..-+..-+ ....+|+-. .+-+.+|..++.|.|-..-. +-++.-.+|+.
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~--~v~~~~f~~flk~lyl~~na-~~~~qynalls 224 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAH--RVILSAFSPFLKQLYLNTNA-EWKDQYNALLS 224 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhh--hhhHhhhhHHHHHHHHhhhh-hhhhHHHHHHh
Confidence 4899988 788899999999999988754333211 233455333 28899999999999987443 44666788999
Q ss_pred HHhhhChhhHHH
Q 005106 261 FANKFCCERLKD 272 (714)
Q Consensus 261 aAd~~~v~~L~~ 272 (714)
...+|+++.+..
T Consensus 225 i~~kF~~e~l~~ 236 (516)
T KOG0511|consen 225 IEVKFSKEKLSL 236 (516)
T ss_pred hhhhccHHHhHH
Confidence 999999887653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.03 E-value=5.6 Score=38.90 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=55.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
..+=.+.+..+++...++...-+.|..++.....||++...|++++|+..++...+-.|.+.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 33445567999999999999999999999999999999999999999999999988888776
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=87.97 E-value=1.6 Score=37.54 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCC
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI---LYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~---ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
+..+|+=|...+..++|+...++|++..++..+.+..+|++ +.+.|+|++.++..-+=+.|..
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577778899999999999999999999999999999875 7889999999988777666543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.75 E-value=0.68 Score=34.14 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
++.|.-+|-+-...++|++|+..|++|++|+.
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999998853
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.23 E-value=3.8 Score=43.74 Aligned_cols=89 Identities=10% Similarity=0.034 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
..++..++..+...|+.+++.+.+++-++.+|-+-.++..+=..++..|+...|+..|++.-.. --.|
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~------------~~ed 220 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT------------LAEE 220 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH------------hhhh
Confidence 3456667778888899999999999999999999999999999999999999999999987664 2234
Q ss_pred cCCCCCchhhHHHHHHHhhcCCC
Q 005106 684 SSQDSSCSSTVVSLLEDALKCPS 706 (714)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~ 706 (714)
.++|| +..+-.+.+++++||-
T Consensus 221 lgi~P--~~~~~~~y~~~~~~~~ 241 (280)
T COG3629 221 LGIDP--APELRALYEEILRQDP 241 (280)
T ss_pred cCCCc--cHHHHHHHHHHhcccc
Confidence 44444 5677777777777763
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=87.12 E-value=10 Score=44.96 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCHhh---HHHHHHHhhhcCChhHHHHHHHH
Q 005106 273 ACDRKLASLVASRED---AVELMGYAIEENSPVLAVSCLQV 310 (714)
Q Consensus 273 ~C~~~L~~~l~~~~n---~l~l~~~A~~~~~~~L~~~c~~~ 310 (714)
....||.+.-+.++. -+.+-++|++++.-.+++.|..-
T Consensus 462 ra~afles~~~~~da~amw~~laelale~~nl~iaercfaa 502 (1636)
T KOG3616|consen 462 RATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAA 502 (1636)
T ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345677776654432 23455678888888899999643
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=86.46 E-value=65 Score=36.68 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=35.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 487 SSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 487 ~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
.-+...|+|.++.-.-.=..+++|++.++...|.++.+.++|++|...+..
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 345666777777776666666777777777777777777777777766654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.33 E-value=18 Score=44.60 Aligned_cols=158 Identities=14% Similarity=0.042 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHh
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGWMYQERSL 457 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------~p~~~~ay~~rg~ 457 (714)
..+.++|.+.++.|...+|++.|-+| +.+..|...-.+..+.|.+++=++.+.-|-+. ...+-.||-+.++
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNR 1181 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhch
Confidence 34578999999999999999999764 44445555556666777777666555433221 1112222322221
Q ss_pred cCCh--------------------hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------
Q 005106 458 YCEG--------------------DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL------- 510 (714)
Q Consensus 458 ~~~~--------------------~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P------- 510 (714)
.... +++. | .|-.+-=++..-|..+|..+..+|.|+.|+...+||=..+-
T Consensus 1182 l~elE~fi~gpN~A~i~~vGdrcf~~~~--y-~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1182 LTELEEFIAGPNVANIQQVGDRCFEEKM--Y-EAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFA 1258 (1666)
T ss_pred HHHHHHHhcCCCchhHHHHhHHHhhhhh--h-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 1000 1111 1 12223334556789999999999999999999999865432
Q ss_pred -------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 511 -------------------ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 511 -------------------~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
..+-+.-.-..|...|-+++-|..++.++-|.-.++.
T Consensus 1259 Cvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred HhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 0111112223488999999999999999998876643
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=85.91 E-value=1.1 Score=50.08 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=67.8
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~ 496 (714)
+..++.|++..+||+..|++.++ -|+++.. + .|. ..-|-+...|++.|-+|++++||.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~-~idl~~~--------~----------l~~---~V~~~~is~~YyvGFaylMlrRY~ 181 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLE-NIDLNKK--------G----------LYT---KVPACHISTYYYVGFAYLMLRRYA 181 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhh-ccCcccc--------h----------hhc---cCcchheehHHHHHHHHHHHHHHH
Confidence 56788899999999999998765 3444321 1 122 223445677899999999999999
Q ss_pred HHHHHHHHHHhcCCCHH-HHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCC
Q 005106 497 AALAEINRILGFKLALE-CLELRFCFFLA-LEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 497 eAl~~~~kAL~l~P~~~-~~~~R~~~~~~-lgd~e~Al~d~~~al~L~P~ 544 (714)
+|+..|+.+|-.--... .++.+..-+.. .+..|+....+--++.+.|.
T Consensus 182 DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 182 DAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 99999999985422111 11112211111 23455666666667777775
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=85.74 E-value=6.8 Score=37.32 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 480 YPYMYRASSLMTKQ---NVEAALAEINRILG-FKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 480 ~ay~~rg~~l~~l~---r~~eAl~~~~kAL~-l~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
+..+++|-++.... +.++.|..+...++ -.|. -++.+.++..+.++|+|+.|++..+..++.+|+|.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 45567777776654 46788999999996 4453 57888899999999999999999999999999994
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=85.54 E-value=50 Score=41.24 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhc-------CCHHHHHHHHHHHHhcCCC-HHHHHH
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLS---YPYMYRASSLMTK-------QNVEAALAEINRILGFKLA-LECLEL 517 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~---~ay~~rg~~l~~l-------~r~~eAl~~~~kAL~l~P~-~~~~~~ 517 (714)
+.|+.+-..| +.|+.-|++.-+-=|.-. +|.+..|.++.++ ..+++|+.+|++.-.- |. |--|.-
T Consensus 482 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 557 (932)
T PRK13184 482 PDAFLAEKLY---DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VGAPLEYLG 557 (932)
T ss_pred cHHHHhhHHH---HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCCchHHHh
Confidence 3444444444 555555555555554442 3444455555443 2478888888886632 33 333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 518 RFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 518 R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
.+.+|..+|+|+|=+++|.-|++.-|+.+.
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 667899999999999999999998888754
|
|
| >PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] | Back alignment and domain information |
|---|
Probab=85.53 E-value=1.7 Score=37.12 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
++.+.+.+|+.+|++++++.|.+.|++.++..+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999999999885
|
It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A .... |
| >COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.97 E-value=4 Score=38.11 Aligned_cols=95 Identities=21% Similarity=0.204 Sum_probs=68.8
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCC--------------
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN-------------- 248 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~-------------- 248 (714)
|.+.. +|+.|.+.+. +|-+|-..+.|+.. +.+++-. |..+ +|...+|+.+++|+-..+-.
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d-~~~~n~p-~p~p--nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~ 78 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCD-STACNYP-IPAP--NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSK 78 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhcc-ccccCCC-Cccc--chhHHHHHHHHHHHHhccccCCCccChHhhhccC
Confidence 45544 6677777655 57888888888763 3333322 3334 69999999999998653211
Q ss_pred ----------CCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 249 ----------GVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 249 ----------~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
.++.+.+.++.-+|+++.+..|.+.|+..+...+.
T Consensus 79 p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 79 PSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred CccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 02345678999999999999999999999998875
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=84.75 E-value=5.4 Score=34.37 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH---HHHHhcCCHHHHHHHHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRF---CFFLALEDYQAALCDVQA 537 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~---~~~~~lgd~e~Al~d~~~ 537 (714)
+...+..|.=+...++.++|+..+++|++-.++ ++.+..+| .+|.+.|+|.++++.--+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888889999999999999999998886 56666666 469999999998875433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.68 E-value=0.9 Score=49.41 Aligned_cols=54 Identities=19% Similarity=0.129 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~ 643 (714)
+-.-.-+++.+|....+|+++|..+..+.++++|++++..|...+|++....--
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence 334445556777777777777777777777777777777777777777654433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.47 E-value=1.2 Score=29.58 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHH
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQL 629 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~ 629 (714)
+.+++++|.++..+|++++|.+.+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 35788999999999999999998763
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.38 E-value=4.3 Score=39.25 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 654 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ 654 (714)
-..++.+--+.|+.++...--|.++...|++.||++.++...+-.|..+.+---+.+||+-+|+.
T Consensus 30 e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 30 QAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33444455555555555555555555555555555555555555555555555555555555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=84.26 E-value=8 Score=39.69 Aligned_cols=47 Identities=15% Similarity=0.014 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 462 DKRWEDLDKATALDPTL------SYPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
..|+..|.+|++-...- ....+-.|.+.+++|++++|+.-|.++|.-
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 55666666666655431 234444666666666666666666666654
|
|
| >KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.04 E-value=1.6 Score=46.21 Aligned_cols=85 Identities=9% Similarity=0.188 Sum_probs=62.4
Q ss_pred cEEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCCC---cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 005106 183 NVVFRIHEEKIECDRQKFAALS-APFSAMLNGSFM---ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEI 258 (714)
Q Consensus 183 DV~l~v~~~~f~aHr~VLAa~S-~yF~amF~~~~~---Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~v~~l 258 (714)
-++..|++..|-..+.+|.+.- .-.-.||.+++. -....+.++-+ ||+..+|+++|+|--||.+.-.+.-.|-+|
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAd-Gi~s~vFRAILdYYksG~iRCP~~vSvpEL 175 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVAD-GMTSSCFRAILDYYQSGTMRCPSSVSVSEL 175 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhc-chhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence 4788888889999998886542 234567877653 23346777776 999999999999999999872233356777
Q ss_pred HHHHhhhChh
Q 005106 259 LIFANKFCCE 268 (714)
Q Consensus 259 L~aAd~~~v~ 268 (714)
-++.|+++|+
T Consensus 176 rEACDYLlip 185 (438)
T KOG3840|consen 176 REACDYLLVP 185 (438)
T ss_pred HhhcceEEee
Confidence 7777777665
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.03 E-value=1.2 Score=48.51 Aligned_cols=117 Identities=13% Similarity=0.027 Sum_probs=69.0
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHH
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED 467 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d 467 (714)
+.|.-.+..++|+.|..-|.++++..+..+ .-.......+ ...+.... ..+.-+.+..-... ..+..|+..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s---~~~~~e~~~~-~~~~~~~r--~~~~~n~~~~~lk~---~~~~~a~~~ 297 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQS---RDREKEQENR-IPPLRELR--FSIRRNLAAVGLKV---KGRGGARFR 297 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccc---cccccccccc-cccccccc--cccccchHHhcccc---cCCCcceec
Confidence 567888899999999999999877633200 0001111110 00000000 00111111111111 222666666
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE 513 (714)
Q Consensus 468 ~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~ 513 (714)
-.-+++.+|..+.||+.||..++.+.++++|+.++..+.+.+|+..
T Consensus 298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 6667778888888888888888888888888888888888888643
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.00 E-value=18 Score=36.11 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=35.2
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhcc----chhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAAVNAG----HIYSIAGLARLGYIKGHKLWAYEKLNSVIS 443 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~AL~~~----~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~ 443 (714)
+-..-..+.+..++|...|...=+-+ |.-+....|.+..+.|+...|+..|..+-.
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 44444556677788887777643333 233344456677888888888888875443
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.54 E-value=42 Score=38.81 Aligned_cols=208 Identities=15% Similarity=0.090 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-----LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-----~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
+...+.+.+...+.|..+....+.|-.+..+|+.+.|+..++..+. +. .-+++-|+|++.-+-+|..|-.++.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4444556677788999999999999999999998889999999886 42 2245568888888888888888877
Q ss_pred HHHhhCCCchhhhhhHH-----------H-------------HHHHHHHHH-------hhhhhhHHHHHHh---------
Q 005106 537 AILTLSPDYRMFEGRVA-----------A-------------SQLHMLVRE-------HIDNWTIADCWLQ--------- 576 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~-----------a-------------~~~~~~l~~-------~~~~~~~A~~~~~--------- 576 (714)
....++-=...+|..-. . ......+.. ..--..++.-|..
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~ 407 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASIL 407 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccccc
Confidence 77666543222211111 0 000111111 0000111211111
Q ss_pred -------hhhccccccccc--hHHHHHHHHHhCCCC-----h-hHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC--
Q 005106 577 -------LYDRWSSVDDIG--SLSVIYQMLESDAPK-----G-VLYFRQSLLLLRLNCPEAAMRSLQLARQH---AAS-- 636 (714)
Q Consensus 577 -------l~~~~~~~~d~~--al~~~~qaL~l~P~~-----~-~~~~~~g~~L~~lg~~eeAl~~~~~Al~l---~P~-- 636 (714)
+.-.|....... .+.-++..++. |+. . .-++-+|.+|-.||+.+.|...+...++- ...
T Consensus 408 la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~-~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~ 486 (546)
T KOG3783|consen 408 LASPYYELAYFWNGFSRMSKNELEKMRAELEN-PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDL 486 (546)
T ss_pred ccchHHHHHHHHhhcccCChhhHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcccc
Confidence 112232222221 22333444433 322 1 23788999999999999999999998833 222
Q ss_pred --ChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCHH
Q 005106 637 --DHERLVYEGWILYDTSH-CEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 637 --~~ea~~~~G~~ly~~G~-~eeAl~~ye~Ai~i~~~~~ 672 (714)
-+.|+|-+|..+.++|. +.||.+..+||-+-.-+++
T Consensus 487 w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 487 WAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred ccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 46789999999999999 9999988888877654443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.09 E-value=13 Score=36.99 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc-----chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-----HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-GWMYQERS 456 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~-----~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~-~~ay~~rg 456 (714)
..++..+|.-+...|++++|++.|.++.+.. ..+.+..+-++....|++......++++-.+-..- .|...+|
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr- 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR- 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH-
Confidence 3677889999999999999999999987761 23445667788899999999888877766553321 1222222
Q ss_pred hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (714)
Q Consensus 457 ~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL 506 (714)
.-..-|..++..++|.+|...|-.++
T Consensus 115 ------------------------lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 ------------------------LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred ------------------------HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 22345667777888888888877765
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.59 E-value=2e+02 Score=39.15 Aligned_cols=313 Identities=12% Similarity=0.005 Sum_probs=179.1
Q ss_pred HHHHHHHhccchHHHHHHHHHH----Hhccchhh-HhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChh
Q 005106 388 QLGCVRLLRKEYDEAEHLFEAA----VNAGHIYS-IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGD 462 (714)
Q Consensus 388 ~lG~~~~~~g~y~eA~~~f~~A----L~~~~~~a-~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~ 462 (714)
.++.+-+.+|.|..|+-++++= .+.+...+ +..+-.+|...++++.-..-... ....|++-.-....-..+..+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHHHHHHHhhccHH
Confidence 5788888999999999999982 22222222 23344477788888765443321 223344433333333345569
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH-HHHhcCCHHHHHHH------
Q 005106 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFC-FFLALEDYQAALCD------ 534 (714)
Q Consensus 463 eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~-~~~~lgd~e~Al~d------ 534 (714)
.|.++|++++..+|+....+...=......|.++..+...+-.+.=.++ .+.+.+.+. +--.+++|+.-...
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~ 1546 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRNI 1546 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhcccc
Confidence 9999999999999999988888888888889999988877766654333 444444331 11233333322221
Q ss_pred -------H---------------------HHHHhhCCCchhhhhhH--HHHHHHHHHHHh---------hhh-------h
Q 005106 535 -------V---------------------QAILTLSPDYRMFEGRV--AASQLHMLVREH---------IDN-------W 568 (714)
Q Consensus 535 -------~---------------------~~al~L~P~~~~~~~~~--~a~~~~~~l~~~---------~~~-------~ 568 (714)
. .+.+.++|--..+.++- .++.....+-.. +.+ .
T Consensus 1547 e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~ 1626 (2382)
T KOG0890|consen 1547 EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSA 1626 (2382)
T ss_pred cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 0 11111111111100000 011111111000 000 0
Q ss_pred hHHHHHHhhhhccccccccc-hHHHHHHHH-Hh------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 569 TIADCWLQLYDRWSSVDDIG-SLSVIYQML-ES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 569 ~~A~~~~~l~~~~~~~~d~~-al~~~~qaL-~l------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
..-+.|......-....++. .+-.++|++ .. +-.-++.|.+.|.+=-+.|+++-|....=.|.+.. -+++
T Consensus 1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i 1704 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEI 1704 (2382)
T ss_pred ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchH
Confidence 11233444444333332222 122333332 22 33445667777777677999999999999999988 5778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC------------HHHHHHHHHHhh----ccCCCCCchhhHHHHHHHhhc
Q 005106 641 LVYEGWILYDTSHCEEGLRKAEESIQM-KRS------------FEAFFLKAYALA----DSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 641 ~~~~G~~ly~~G~~eeAl~~ye~Ai~i-~~~------------~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 703 (714)
+.-++-.+..+|+-..|+...++.+++ .|+ ..-+|.||..+. +-+-. .+|.-|+..--+|.-
T Consensus 1705 ~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~a 1783 (2382)
T KOG0890|consen 1705 VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKA 1783 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHH
Confidence 899999999999999999999999976 454 124555555543 33333 566666665555555
Q ss_pred C
Q 005106 704 C 704 (714)
Q Consensus 704 ~ 704 (714)
|
T Consensus 1784 i 1784 (2382)
T KOG0890|consen 1784 I 1784 (2382)
T ss_pred H
Confidence 5
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=82.54 E-value=3.9 Score=42.70 Aligned_cols=61 Identities=11% Similarity=-0.070 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
|++.|++|+.+.|+++..|+.+|.+....|+.=+|+=.|-||+...-.|. |.-|-.-.+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67888888888888888888888888888888888888888888755555 66665555554
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.11 E-value=93 Score=35.77 Aligned_cols=154 Identities=18% Similarity=0.043 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhc---cch---------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc-------
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA---GHI---------YSIAGLARLGYIKGHKLWAYEKLNSVISS------- 444 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~---~~~---------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------- 444 (714)
+.+..+..+..-+|++.+|++....+.+. -|. ..+.-+|.-...-|.++.|...|..|.++
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 44466777778889999998887776554 111 12344666566677888888888887775
Q ss_pred ---CCCcHHHHHHHHhcCChhHHHHHHHHHHh-cCCCC----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 445 ---VTPLGWMYQERSLYCEGDKRWEDLDKATA-LDPTL----------SYPYMYRASSLMTKQNVEAALAEINRILGFKL 510 (714)
Q Consensus 445 ---~p~~~~ay~~rg~~~~~~eAl~d~~kAi~-LdP~~----------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P 510 (714)
+-|++..|.+.|. .+|+.++++ +.|.+ +..++-.|.-.+.+|++.||-.-..+.|+...
T Consensus 404 a~~nlnlAi~YL~~~~-------~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman 476 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGD-------AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN 476 (629)
T ss_pred HHHHHhHHHHHHHhcc-------HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 2344444444322 234444443 45554 35667788889999999999999999998753
Q ss_pred CHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 511 ALE-------CLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 511 ~~~-------~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
.-+ .+..++.+...+|+..++..-.+-+.++..+
T Consensus 477 aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 477 AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 111 1234667888999999999988888887644
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.95 E-value=56 Score=32.73 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=30.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--HHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 491 TKQNVEAALAEINRILGFKLA--LECLELR-FCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 491 ~l~r~~eAl~~~~kAL~l~P~--~~~~~~R-~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
..|+.++|++.|...-.-.-. |-....| +.+..+.|+-.+|+.+|..+-.-.|-
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~ 126 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI 126 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC
Confidence 345666666666655543332 2222334 34666677777777777766655544
|
|
| >COG3014 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.83 E-value=38 Score=37.14 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
...++.|.-||+.++++.|.-+|+||.+-.-.+.-+ +. +..+.|+++.+.+ ..+|++
T Consensus 126 ~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~--~~------~ei~ka~~e~ds~-k~~~N~ 182 (449)
T COG3014 126 LINYYKALNYMLLNDSAKARVEFNRANERQRRAKEF--YY------EEVQKAIKEIDSS-KHNINM 182 (449)
T ss_pred HHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHH--HH------HHHHHHHHHHHhc-cCCCch
Confidence 356789999999999999999999999643212111 11 1245566666554 467776
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=81.20 E-value=5.7 Score=34.97 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=39.5
Q ss_pred HHhccchHHHHHHHHHHHhc----c-------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC
Q 005106 393 RLLRKEYDEAEHLFEAAVNA----G-------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSV 445 (714)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~~----~-------~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~ 445 (714)
....|+|.+|++.+.+.... + ...+..++|.++...|++++|+..+++||.+-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34678888887777665543 1 13566778889999999999999999888863
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=81.08 E-value=5.5 Score=41.59 Aligned_cols=61 Identities=20% Similarity=-0.002 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHh
Q 005106 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK-LALECLELRFCFFLA 524 (714)
Q Consensus 464 Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~-P~~~~~~~R~~~~~~ 524 (714)
|...|.+|+.+.|++..+|+.+|.+....|+.=+|+=.|-|++... |-+.+..|...++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999753 445566776666555
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.07 E-value=74 Score=34.83 Aligned_cols=186 Identities=11% Similarity=-0.031 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHhc--CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 430 HKLWAYEKLNSVISSVTPLGWMYQERSLY--CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG 507 (714)
Q Consensus 430 ~~~~A~~~~~~aI~~~p~~~~ay~~rg~~--~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~ 507 (714)
+..+-++.-..|++++|..+.+|.-.+.- --..+|-..|.+|++-- +.-+++.......|...+|. ..
T Consensus 199 np~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~~da~------~r 268 (556)
T KOG3807|consen 199 NPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQHEAQ------LR 268 (556)
T ss_pred CcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccchhhh------hh
Confidence 33444555566777888888777766431 11144555566655422 12222333333333322222 22
Q ss_pred cCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccc
Q 005106 508 FKLALECLEL--RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585 (714)
Q Consensus 508 l~P~~~~~~~--R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~ 585 (714)
-|.+...|.. ++++-.++|+..+|++-++...+--|-..+...+. ++ ++..++-..-||+. ..+..+|
T Consensus 269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lnihe---NL---iEalLE~QAYADvq----avLakYD 338 (556)
T KOG3807|consen 269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHE---NL---LEALLELQAYADVQ----AVLAKYD 338 (556)
T ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHH---HH---HHHHHHHHHHHHHH----HHHHhhc
Confidence 2344444443 35677888888888888888877777544433221 12 22222222223332 2222334
Q ss_pred ccc----hHHHHHHHHHh-----CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 005106 586 DIG----SLSVIYQMLES-----DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (714)
Q Consensus 586 d~~----al~~~~qaL~l-----~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e 639 (714)
|+. |..+|..||-. +-=+++.-.++|+.-..++ |++.+.+|.+.||.-+-
T Consensus 339 dislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~----AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 339 DISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEIN----AVEAIHRAVEFNPHVPK 397 (556)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHH----HHHHHHHHhhcCCCCcH
Confidence 443 33355555422 1224555556666655544 67778899999998653
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.87 E-value=12 Score=42.37 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=86.9
Q ss_pred cCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 005106 492 KQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~ 570 (714)
.|+...|-.-...+|.-.|. |..-..++.+...+|+||+|.+++.-+-..=..- ..+.+.+..-..-+.+|+.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~------~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT------DSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC------chHHHHHHHhhhchhhHHH
Confidence 45666666666667766674 6655667777888888888877765544321110 1233333334445556666
Q ss_pred HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH-HHHH-H
Q 005106 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY-EGWI-L 648 (714)
Q Consensus 571 A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~-~G~~-l 648 (714)
| ++.-.-+|...-.+++...--+..-..+|.+++|.-...+.+.++|......+| +... +
T Consensus 376 a------------------~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~ 437 (831)
T PRK15180 376 A------------------LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQY 437 (831)
T ss_pred H------------------HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecccee
Confidence 6 222233333333333332222233345688999999999999999864322111 1111 2
Q ss_pred HhcC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 005106 649 YDTS-HCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (714)
Q Consensus 649 y~~G-~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~ 682 (714)
+..| -|.||.. .-|.-|+-+..|.--|..|+
T Consensus 438 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 469 (831)
T PRK15180 438 FNDGNAFSEAFH---AGIQSQRLNDTFMETALSLA 469 (831)
T ss_pred ccCcchHHHHHH---hhhhhhhhhHHHHHHHHHHH
Confidence 2223 2555543 33444444455555555444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=80.68 E-value=16 Score=35.33 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=53.2
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.+.+.++...+....-+.|+.++.....||++...|+++||+..+++..+--+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 79999999999999999999999999999999999999999999999999887765
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=80.28 E-value=84 Score=33.29 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=99.9
Q ss_pred HhcCCHHHHHHHHHHHHhcC----CC-----HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhh----CCCc---hhh-hhh
Q 005106 490 MTKQNVEAALAEINRILGFK----LA-----LECLELRFCFFLALE-DYQAALCDVQAILTL----SPDY---RMF-EGR 551 (714)
Q Consensus 490 ~~l~r~~eAl~~~~kAL~l~----P~-----~~~~~~R~~~~~~lg-d~e~Al~d~~~al~L----~P~~---~~~-~~~ 551 (714)
..+|+++-|...+.|+=.+. |+ ....++-|.-....+ ++++|+..+++|.++ .+.. ..+ .-|
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35788888888888876654 32 123456667677788 999999999999887 2221 111 112
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 630 (714)
......+ ++.|-.|...+... +...++.+-.--|+.+..++-+=.++.+.++.+++.+.++++
T Consensus 84 ~~iL~~L----------------a~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 84 LSILRLL----------------ANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred HHHHHHH----------------HHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 2222222 22333333333333 456777777777999999977777888899999999999999
Q ss_pred HHhCC-CChhHHHHHHHH-HHhcCCHHHHHHHHHHHHh
Q 005106 631 RQHAA-SDHERLVYEGWI-LYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 631 l~l~P-~~~ea~~~~G~~-ly~~G~~eeAl~~ye~Ai~ 666 (714)
+..-+ ....--...+.+ .+-.-....|...+.+.+.
T Consensus 148 i~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 148 IRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred HHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 98765 222222222222 2223344667777777766
|
It is also involved in sporulation []. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=80.24 E-value=43 Score=34.83 Aligned_cols=193 Identities=12% Similarity=0.075 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFF-LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~--~~~~~~R~~~~-~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~ 558 (714)
+..+|-+..+.|||++++..+.+++..+|. .+--.....+| ...|..-.+.+-+....+-......-.....+...+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 567899999999999999999999999885 33333333332 333444444444444444333220000001111111
Q ss_pred HHHHHhhhh-hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH----HHHHHHHHHH-----c-----CChHHH
Q 005106 559 MLVREHIDN-WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL----YFRQSLLLLR-----L-----NCPEAA 623 (714)
Q Consensus 559 ~~l~~~~~~-~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~----~~~~g~~L~~-----l-----g~~eeA 623 (714)
..+...+.. .+.. +..++.-|--...+++. +-.+|..+-- . .-.+.|
T Consensus 84 ~kie~EL~~~C~ei------------------i~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a 145 (236)
T PF00244_consen 84 KKIEDELIDICNEI------------------IRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKA 145 (236)
T ss_dssp HHHHHHHHHHHHHH------------------HHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------------HHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHH
Confidence 112211111 1111 22333322222222221 1112222111 1 123678
Q ss_pred HHHHHHHHH-----hCCCChhHH---HHHHHHH-HhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCC--CCchh
Q 005106 624 MRSLQLARQ-----HAASDHERL---VYEGWIL-YDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD--SSCSS 692 (714)
Q Consensus 624 l~~~~~Al~-----l~P~~~ea~---~~~G~~l-y~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~--~~~~~ 692 (714)
...|++|+. +.|.++-.+ .|.+.-+ --+|+.++|+...++|+ -.|..--|+-=| -.-|.
T Consensus 146 ~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af----------d~a~~~l~~l~e~~~~d~~ 215 (236)
T PF00244_consen 146 LEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF----------DEAISELDTLSEESYKDST 215 (236)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH----------HHHHHGGGGSHTTTHHHHH
T ss_pred HHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH----------HHHHhhhcccchhhhHHHH
Confidence 888888776 567776432 1222223 33799999999999884 344444443111 22356
Q ss_pred hHHHHHHHhh
Q 005106 693 TVVSLLEDAL 702 (714)
Q Consensus 693 ~~~~~~~~~~ 702 (714)
.++|||-|=|
T Consensus 216 ~ilqlLrdNl 225 (236)
T PF00244_consen 216 LILQLLRDNL 225 (236)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6788887643
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 4e-10
Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 16/165 (9%)
Query: 153 PIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLN 212
+A L + + + + ++ + + AA S FSAM
Sbjct: 18 ECRLADELG------------GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 65
Query: 213 GSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKD 272
ES +++ N++ P + + F TG + ++L A+K+ ERLK
Sbjct: 66 HEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMADDLLAAADKYALERLKV 122
Query: 273 ACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317
C+ L S + S E+A E++ A ++ L + D
Sbjct: 123 MCEDALCSNL-SVENAAEILILADLHSADQLKTQAVDFINYHATD 166
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 4e-10
Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 16/165 (9%)
Query: 153 PIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLN 212
+A L + + + + ++ + + AA S FSAM
Sbjct: 158 ECRLADELG------------GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 205
Query: 213 GSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKD 272
ES +++ N++ P + + F TG + ++L A+K+ ERLK
Sbjct: 206 HEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMADDLLAAADKYALERLKV 262
Query: 273 ACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317
C+ L S + S E+A E++ A ++ L + D
Sbjct: 263 MCEDALCSNL-SVENAAEILILADLHSADQLKTQAVDFINYHATD 306
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-09
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 153 PIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLN 212
+A L + + + + ++ + + AA S FSAM
Sbjct: 9 ECRLADELG------------GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 56
Query: 213 GSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKD 272
ES +++ N++ P + + F TG + ++L A+K+ ERLK
Sbjct: 57 HEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMADDLLAAADKYALERLKV 113
Query: 273 ACDRKLAS 280
C+ L S
Sbjct: 114 MCEDALCS 121
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 2e-07
Identities = 81/592 (13%), Positives = 172/592 (29%), Gaps = 163/592 (27%)
Query: 215 FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN------LLLEILIFANKFCCE 268
F ++ ++ D ++ I+S + + + + L L+ + +
Sbjct: 25 FEDAFVDNFDC--KDVQDMPKSILSKEEIDHIIM--SKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 269 RLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIF 328
+ + R + S E+ P + ++++ + ND ++F
Sbjct: 81 KFVEEVLRINYKFLMSP--------IKTEQRQPSMMT---RMYIEQRDRLYND---NQVF 126
Query: 329 S--HANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSD----------KTVCFLERLLESA 376
+ + +R Y L + + L P + KT L+ L
Sbjct: 127 AKYNVSRLQ-----------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY- 174
Query: 377 ETDRQRLLAFH----QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKL 432
Q + F L + E + E + +R + KL
Sbjct: 175 --KVQCKMDFKIFWLNLK-------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 433 ---WAYEKLNSVISSVTPLGWMYQERSL------YCEGDKR-WEDLD---K--------- 470
+L ++ S Y+ L + + W + K
Sbjct: 226 RIHSIQAELRRLLKS-----KPYE-NCLLVLLNVQ---NAKAWNAFNLSCKILLTTRFKQ 276
Query: 471 -ATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLAL 525
L T ++ + S +T V++ L + L L R
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 526 --------EDYQAALCD-----VQAIL-TLSP-DYR-MFEGRVAASQLHMLVRE--HIDN 567
++++ CD +++ L L P +YR MF+ +L + HI
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD------RLSVF-PPSAHIPT 389
Query: 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627
++ W + V + + Y ++E + + + L L +L
Sbjct: 390 ILLSLIWFDVIKS--DVMVVVNKLHKYSLVEKQPKESTISIPS--IYLELKVKLENEYAL 445
Query: 628 QLARQHAASDHERLV--YEGWILYDTSHCE----------------EGLRKAEESIQMKR 669
H +V Y +D+ + + E +
Sbjct: 446 ----------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 670 SFEAF-FLKAYALADSSQDSSCSSTVVSLLEDALK------CPSDRLRKGQV 714
F F FL+ + S + S ++++ L+ LK C +D + V
Sbjct: 496 VFLDFRFLEQ-KIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLV 545
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 3e-07
Identities = 55/302 (18%), Positives = 95/302 (31%), Gaps = 94/302 (31%)
Query: 6 PSDSCKESQL----------NGFN-PQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPR 54
P + + +G +W V KL+ + IES + V EP
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---------IESSLNVLEPA 369
Query: 55 IL-PNYK-----PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLR 108
+ P A I L L + + V KL + SL
Sbjct: 370 EYRKMFDRLSVFPPS-----AHIPTIL-LSLIWFDVIKSDVMVVV------NKLHKYSLV 417
Query: 109 KAWQKASTVHEKLVFGAWLKYEKQGEELIA--DLLINCDKCLQEF-------GPID---- 155
+ K ST+ + +L+ + + E A +++ + F +D
Sbjct: 418 EKQPKESTIS---IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 156 --IASHLQTDINVAGSHETVSMSGDQVLRNVV--FRIHEEKIECDRQKFAALSAPFSAML 211
I HL+ E +++ R V FR E+KI R A +A
Sbjct: 475 SHIGHHLKN----IEHPERMTL-----FRMVFLDFRFLEQKI---RHDSTAWNAS----- 517
Query: 212 NGSFMESLCEDIDLSENNISPSG------LRIISDFSVTGSLNGVTPNLLLEILIFANKF 265
GS + +L + + + I + + I DF L + NL+ +K+
Sbjct: 518 -GSILNTL-QQLKFYKPYICDNDPKYERLVNAILDF-----LPKIEENLIC------SKY 564
Query: 266 CC 267
Sbjct: 565 TD 566
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 14/162 (8%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444
A Q G + L + + DEAE F+ + + + A+ IK ++
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ------ 149
Query: 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504
Y LDK + + RA + + A++++
Sbjct: 150 ----ALNAFGSGDY---TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202
Query: 505 ILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545
K E + L D++ +L +V+ L L D+
Sbjct: 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 32/207 (15%), Positives = 68/207 (32%), Gaps = 16/207 (7%)
Query: 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL----GFKLALECLELRFCF 521
A DP Y RA+ + +AAL ++ +++ F A L+
Sbjct: 47 SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR--LQRGHL- 103
Query: 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581
L A D + +L +P + A + E + A +
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSNPSENEEK---EAQSQLIKSDEMQRLRSQALNAFGS-GDY 159
Query: 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641
++ ++ + ++LE L ++ ++ P A+ L+ A + + E
Sbjct: 160 TAA-----IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214
Query: 642 VYEGWILYDTSHCEEGLRKAEESIQMK 668
+ Y E L + E +++
Sbjct: 215 YKISTLYYQLGDHELSLSEVRECLKLD 241
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 7e-07
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 174 SMSGDQVLRNVVFRI----HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENN 229
SM ++++ +V F + + + A S+ F AM G E +I + +
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPD-- 57
Query: 230 ISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
+ P+ I+ + + ++ + + +L L A K+ L AC L +
Sbjct: 58 VEPAAFLILLKYMYSDEID-LEADTVLATLYAAKKYIVPALAKACVNFLET 107
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 14/162 (8%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444
A Q G + L + + DEAE F+ + + A +K ++
Sbjct: 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ------ 126
Query: 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504
+ + Y LDK + + RA + + A++++
Sbjct: 127 ----ALDAFDGADY---TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 505 ILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545
K E + L D++ +L +V+ L L D+
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 16/138 (11%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAV--NAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI 442
A G A+ A + + L L K + A E L
Sbjct: 113 AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHF 171
Query: 443 SSVTPLGWMYQERSLYCEGDKRW-------EDLDKATALDPTLSYPYMYRASSLMTKQNV 495
W + Y D T+L LS Y ++ ++
Sbjct: 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231
Query: 496 EAALAEINRILGFKLALE 513
++A A FKLA+
Sbjct: 232 DSATAL------FKLAVA 243
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 21/164 (12%), Positives = 45/164 (27%), Gaps = 16/164 (9%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444
Q + + +A F + + + + +K + + S
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIA----------LNIDRTEMYYWTNVDKNSEISSK 55
Query: 445 VTP-LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN 503
+ L Y++ Y DK + + P A + + + AL
Sbjct: 56 LATELALAYKKNRNY---DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112
Query: 504 RILGF--KLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545
+IL + L ++L E + L L+
Sbjct: 113 KILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 21/162 (12%), Positives = 52/162 (32%), Gaps = 17/162 (10%)
Query: 355 AMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAV--NA 412
+ L+ D+T + ++ +L +L + YD+A ++ +
Sbjct: 30 TIALNI--DRTEMYYWTNVDKNSEISSKL--ATELALAYKKNRNYDKAYLFYKELLQKAP 85
Query: 413 GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP--------LGWMYQERSLYCEGDKR 464
++ + A + +G + A ++ + LG Y + K+
Sbjct: 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNYYYLTAEQE--KKK 142
Query: 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506
E K + + Y S + E A + +++
Sbjct: 143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV 243
VV + E+ + A S F ++ +L E I+P G I+ DF
Sbjct: 32 VVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPE--INPEGFNILLDFMY 89
Query: 244 TGSLNGVTPNLLLEILIFAN--------KFCCERLKDA 273
T LN + ++ ++ A C + +K +
Sbjct: 90 TSRLN-LREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 4/99 (4%)
Query: 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG 507
Q + L +A L P + V+ L + + G
Sbjct: 282 NSGGKQALETV---QRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 338
Query: 508 FKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545
+ ALE Q L + L+P+
Sbjct: 339 LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 28/170 (16%), Positives = 49/170 (28%), Gaps = 15/170 (8%)
Query: 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHK-LWAYEK-LNSVISS 444
HQ R L A L + + +A+ G + + + A+ L +
Sbjct: 8 HQWSGARALEALLTVAGELRGPPLQL-DTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66
Query: 445 VTP--------LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496
+TP Q + L +A L P + V+
Sbjct: 67 LTPEQVVAIASHDGGKQALETV---QRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 123
Query: 497 AALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545
L + + G + + ALE QA L + L+P+
Sbjct: 124 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ 173
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 5e-04
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%)
Query: 169 SHETVSMSGDQVLRN------VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCED 222
H + +SG R VV + + R AA S F + +
Sbjct: 7 DHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNV 66
Query: 223 IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDAC 274
++ +S L + DF+ T +L V+ + +IL A + C
Sbjct: 67 YEIDF--VSAEALTALMDFAYTATLT-VSTANVGDILSAARLLEIPAVSHVC 115
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 9e-04
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 7/95 (7%)
Query: 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV 243
+ + A S F ++ + + + L ++ DF
Sbjct: 27 ATLDVGGLVFKAHWSVLACCSHFFQSL----YGDGSGGSVVLPA--GFAEIFGLLLDFFY 80
Query: 244 TGSLNGVTPNLLLEILIFANKFCCERLKDACDRKL 278
TG L +T ++L+ A + + C
Sbjct: 81 TGHLA-LTSGNRDQVLLAARELRVPEAVELCQSFK 114
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 714 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 99.97 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 99.97 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.96 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.95 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.95 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.94 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.94 | |
| 3htm_A | 172 | Speckle-type POZ protein; BTB, SPOP, ubiquitin, li | 99.93 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.93 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.93 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.93 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.93 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.93 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.92 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.92 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.92 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.92 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.91 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.91 | |
| 3hqi_A | 312 | Speckle-type POZ protein; SPOP, ubiquitin, puckere | 99.91 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.91 | |
| 4eoz_A | 145 | Speckle-type POZ protein; E3 ubiquitin ligase, nuc | 99.9 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.9 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.89 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.89 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.89 | |
| 2vkp_A | 109 | BTB/POZ domain-containing protein 6; protein-bindi | 99.89 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.88 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.88 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.88 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.88 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.88 | |
| 2if5_A | 120 | Zinc finger and BTB domain-containing protein 7A; | 99.87 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.87 | |
| 1r29_A | 127 | B-cell lymphoma 6 protein; BTB domain, transcripti | 99.87 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.86 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.86 | |
| 2z8h_A | 138 | Transcription regulator protein BACH1; BTB, POZ, d | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.86 | |
| 2ppi_A | 144 | Gigaxonin; BTB domain, protein degradation, struct | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.85 | |
| 3b84_A | 119 | Zinc finger and BTB domain-containing protein 48; | 99.85 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.85 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.85 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.85 | |
| 2vpk_A | 116 | Myoneurin; transcription regulation, transcription | 99.85 | |
| 1buo_A | 121 | POZ domain, protein (promyelocytic leukemia zinc f | 99.85 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.85 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.85 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.84 | |
| 2yy9_A | 135 | Zinc finger and BTB domain-containing protein 48; | 99.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.84 | |
| 2ihc_A | 124 | Transcription regulator protein BACH1; BRIC-A-BRAC | 99.83 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.83 | |
| 3ohu_A | 125 | Transcription regulator protein BACH2; BTB/POZ dom | 99.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.83 | |
| 2q81_A | 119 | MIZ-1 protein; BTB/POZ domain, transcription; HET: | 99.82 | |
| 3ga1_A | 129 | Nucleus accumbens-associated protein 1; BTB/POZ do | 99.82 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.82 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.82 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.82 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.81 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.81 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.8 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.8 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.8 | |
| 3m5b_A | 119 | Zinc finger and BTB domain-containing protein 32; | 99.8 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.79 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.79 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.78 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.78 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.78 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.78 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.77 | |
| 3fkc_A | 116 | Transcriptional regulator kaiso; zinc finger and B | 99.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.77 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.76 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.74 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.74 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.74 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.73 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.73 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.73 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.73 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.73 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.71 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.71 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.7 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.7 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.69 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.68 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.68 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.65 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.65 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.65 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.64 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.64 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.64 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.64 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.62 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.61 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.61 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.6 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.6 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.59 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.59 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.58 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.57 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.57 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.56 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.53 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.53 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.51 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.51 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.51 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.5 | |
| 2ast_A | 159 | S-phase kinase-associated protein 1A; SCF-substrat | 99.5 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.48 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.47 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.46 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.45 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.45 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.45 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.45 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.44 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.43 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.43 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.42 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.41 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.41 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.4 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.39 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.36 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.35 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.34 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.33 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.33 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.32 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.32 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.32 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.31 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.3 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.29 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.29 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.29 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.29 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.29 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.25 | |
| 4ajy_C | 97 | Transcription elongation factor B polypeptide 1; E | 99.21 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.2 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.2 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.19 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.15 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.07 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.06 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.06 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.05 | |
| 1fs1_B | 141 | SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le | 99.05 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.03 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.95 | |
| 2p1m_A | 160 | SKP1-like protein 1A; F-BOX, leucine rich repeat, | 98.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.9 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.88 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.88 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.88 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.8 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.78 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.74 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.69 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.63 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.61 | |
| 2eqx_A | 105 | Kelch repeat and BTB domain-containing protein 4; | 98.57 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.57 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.49 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.44 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.42 | |
| 1hv2_A | 99 | Elongin C, ELC1; protein-peptide complex, signalin | 98.41 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.4 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.4 | |
| 2fnj_C | 96 | Transcription elongation factor B polypeptide 1; b | 98.32 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.32 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.31 | |
| 3v7d_A | 169 | Suppressor of kinetochore protein 1; WD 40 domain, | 98.3 | |
| 3drz_A | 107 | BTB/POZ domain-containing protein KCTD5; potassium | 98.16 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.15 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.07 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.98 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.98 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.85 | |
| 1vcb_B | 112 | Protein (elongin C); tumor suppressor, cancer, ubi | 97.82 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.72 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.68 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.43 | |
| 3drx_A | 202 | BTB/POZ domain-containing protein KCTD5; golgi, gr | 97.19 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.6 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.58 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.47 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.22 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.19 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.91 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.81 | |
| 1s1g_A | 124 | Potassium voltage-gated channel subfamily D membe; | 95.69 | |
| 3kvt_A | 115 | Potassium channel protein SHAW; tetramerization do | 95.41 | |
| 1nn7_A | 105 | Potassium channel KV4.2; teteramerization domain, | 95.17 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.14 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.05 | |
| 2nz0_B | 140 | Potassium voltage-gated channel subfamily D membe; | 94.89 | |
| 1t1d_A | 100 | Protein (potassium channel KV1.1); potassium chann | 94.57 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.43 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 94.38 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.09 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.71 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.69 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.13 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.34 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 91.34 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 91.08 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.85 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.39 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 86.21 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.95 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.39 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-33 Score=297.43 Aligned_cols=319 Identities=14% Similarity=0.090 Sum_probs=220.1
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLN 439 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~ 439 (714)
.+....+++.+++..+. ...+++.+|.++...|++++|+..|++|++++| ..++.++|.++...|++++|+..|.
T Consensus 49 ~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (388)
T 1w3b_A 49 LDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp HHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445555554443332 245677788888888888888888888877754 3356777778888888888888888
Q ss_pred HHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHH
Q 005106 440 SVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LEC 514 (714)
Q Consensus 440 ~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~ 514 (714)
++++.+|+...++..+|. .++.++|+..|+++++++|+++.+|.++|.++...|++++|+..|+++++++|+ +..
T Consensus 126 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T 1w3b_A 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 888888877777766654 255578888888888888888888888888888888888888888888888885 677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh-hHHHHHHHHHHHHhhhhhhH--------HHHHHhhhhcccccc
Q 005106 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG-RVAASQLHMLVREHIDNWTI--------ADCWLQLYDRWSSVD 585 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~-~~~a~~~~~~l~~~~~~~~~--------A~~~~~l~~~~~~~~ 585 (714)
+.++|.++...|++++|+..|+++++++|++...+. .+.+....+......+.+++ .++|..+...+...+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence 777777888888888888888888888887643221 11122222222222221111 223334444444444
Q ss_pred ccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 586 DIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (714)
Q Consensus 586 d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~A 664 (714)
++. |+..++++++++|.++.+++++|.++..+|++++|+..++++++++|+++.+++++|+++..+|++++|+..|+++
T Consensus 286 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444 5677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhcCCCHH-HHHHHHHHhhc
Q 005106 665 IQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 665 i~i~~~~~-a~~~~~~~~~~ 683 (714)
++++|++. +|++.|.++..
T Consensus 366 ~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 366 IRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHhHHHHHHH
Confidence 77777777 77777776653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=285.03 Aligned_cols=330 Identities=13% Similarity=0.047 Sum_probs=278.0
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch--hhHhhHHHHHHHhCCHHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLN 439 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--~a~~~lg~~~~~~G~~~~A~~~~~ 439 (714)
.+.....++.+.+..++. ..++..+|.++...|++++|+..++++++.+|. .++..+|.++...|++++|+..|+
T Consensus 15 ~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 91 (388)
T 1w3b_A 15 FEAAERHCMQLWRQEPDN---TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp HHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345555666655544433 456778999999999999999999999999654 468899999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHH
Q 005106 440 SVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LEC 514 (714)
Q Consensus 440 ~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~ 514 (714)
+++++.|+...+|.++|. .++.++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++.+|+ +..
T Consensus 92 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 171 (388)
T 1w3b_A 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999988888864 366699999999999999999999999999999999999999999999999996 788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH---------------HHHHHhhhh
Q 005106 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI---------------ADCWLQLYD 579 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~---------------A~~~~~l~~ 579 (714)
+.++|.++...|++++|+..|+++++++|++..+ ...++.+....+++++ +.+|..+..
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 9999999999999999999999999999998542 2333333333333333 344455555
Q ss_pred ccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 005106 580 RWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 580 ~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
.....+++. |+..++++++++|.++.+|+++|.++.++|++++|+..|+++++++|++++++.++|.++..+|++++|+
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 555556666 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 659 RKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 659 ~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
..|++++++.|++. +++..|.++....- -..-+..+++|++.
T Consensus 326 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 326 RLYRKALEVFPEFAAAHSNLASVLQQQGK----LQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTC----CHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhh
Confidence 99999999999877 99999998876542 34456777777764
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=276.80 Aligned_cols=200 Identities=16% Similarity=0.206 Sum_probs=164.9
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC--cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~--Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~ 252 (714)
+..++.+|||+|+|||++|+|||.|||++|+||++||++++. |+...+|+|+ ++++++|+.+++|+|||++. ++.
T Consensus 25 l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~--~v~~~~f~~ll~~~Yt~~~~-i~~ 101 (256)
T 3hve_A 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNE 101 (256)
T ss_dssp CCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECS--SCCHHHHHHHHHHHHHSCCC-CC-
T ss_pred HHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeC--CCCHHHHHHHHhhccCCCCc-ccH
Confidence 568899999999999999999999999999999999999988 6778899999 59999999999999999999 999
Q ss_pred HHHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHH
Q 005106 253 NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERV 324 (714)
Q Consensus 253 ~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v 324 (714)
+++.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..+++..|...|.+++.+|+.. .|+.+.+
T Consensus 102 ~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l 180 (256)
T 3hve_A 102 DTIQDVVQAADLLLLTDLKTLCCEFLEGCIA-AENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKL 180 (256)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC-SSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHH
T ss_pred hHHHHHHHHHHHHChHHHHHHHHHHHHhhCC-HhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHH
Confidence 9999999999999999999999999999995 799999999999999999999999999888754 7788999
Q ss_pred HHHhccccccchhhhccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh---hhHHHHHH
Q 005106 325 VEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA---ETDRQRLL 384 (714)
Q Consensus 325 ~~ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a---~~~lq~~~ 384 (714)
.++++++++. |..|..++.++++|+.++...|.+++..||++ +|++ +.++.+.+
T Consensus 181 ~~lL~~d~L~-----v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~~-VRf~~l~~~~l~~~v 237 (256)
T 3hve_A 181 KEVISLEKLN-----VGNERYVFEAVIRWIAHDTEIRKVHMKDVMSA-LWVSGLDSSYLREQM 237 (256)
T ss_dssp HHHHHCC------------CTTHHHHTTTCCC--CCSTTTHHHHHHH-HHHHTTCC-CHHHHH
T ss_pred HHHHccCCCC-----CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh-CCCCCCCHHHHHHHH
Confidence 9999999984 77888999999999999998899999999998 6644 55555444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-28 Score=252.91 Aligned_cols=303 Identities=12% Similarity=0.001 Sum_probs=254.0
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+.....++.++...+.. ..+++.+|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..|
T Consensus 18 ~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 94 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF 94 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHH
Confidence 5567777887766655433 5688999999999999999999999999985 4567889999999999999999999
Q ss_pred HHHHhcCC---CcHHHHHHHH----------------hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 005106 439 NSVISSVT---PLGWMYQERS----------------LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL 499 (714)
Q Consensus 439 ~~aI~~~p---~~~~ay~~rg----------------~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl 499 (714)
.++++..| +...++...+ ..+++++|+..|+++++.+|+++.++.++|.++..+|++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999 7776666552 1356699999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++... ......+......+..+.++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~--- 245 (359)
T 3ieg_A 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC------FAHYKQVKKLNKLIESAEELI--- 245 (359)
T ss_dssp HHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHH------HHHHHHHHHHHHHHHHHHHHH---
Confidence 999999999996 8888999999999999999999999999999998542 222222222222222232221
Q ss_pred hccccccccc-hHHHHHHHHHhCCCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 005106 579 DRWSSVDDIG-SLSVIYQMLESDAPKGV----LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (714)
Q Consensus 579 ~~~~~~~d~~-al~~~~qaL~l~P~~~~----~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~ 653 (714)
..+++. |+..++++++.+|.++. ++.++|.++..+|++++|+..++++++++|+++.++.++|.+++.+|+
T Consensus 246 ----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 246 ----RDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp ----HTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ----HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 123333 58899999999999984 477899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 005106 654 CEEGLRKAEESIQMKRSFE-AFFLKAY 679 (714)
Q Consensus 654 ~eeAl~~ye~Ai~i~~~~~-a~~~~~~ 679 (714)
+++|+..|++|++++|++. ++...+-
T Consensus 322 ~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 9999999999999999987 5554443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-29 Score=256.65 Aligned_cols=276 Identities=10% Similarity=-0.003 Sum_probs=250.7
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---- 458 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~---- 458 (714)
.+..+|..+...|++++|+..|+++++.+| ..++..++.++...|++++|+..+.++++.+|+.+.+|..+|.+
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 456788889999999999999999999854 44567789999999999999999999999999999999988753
Q ss_pred C-ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 459 C-EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 459 ~-~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
+ ..++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++++++.|+ ...+..+|.++..+|++++|+..|+
T Consensus 104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5 6799999999999999999999999999999999999999999999999996 7888889999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC---------CCChhHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD---------APKGVLY 607 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~---------P~~~~~~ 607 (714)
++++++|++. .+....+.+....+++++| +..+++++++. |..+.++
T Consensus 184 ~al~~~~~~~------~~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (330)
T 3hym_B 184 QALSIAPEDP------FVMHEVGVVAFQNGEWKTA------------------EKWFLDALEKIKAIGNEVTVDKWEPLL 239 (330)
T ss_dssp HHHTTCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred HHHHhCCCCh------HHHHHHHHHHHHcccHHHH------------------HHHHHHHHHHhhhccccccccHHHHHH
Confidence 9999999983 3455555555666666666 78899999997 8888999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS 684 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~ 684 (714)
+++|.++..+|++++|+..++++++++|+++.++.++|++++.+|++++|+..|+++++++|++. ++...|.++.-.
T Consensus 240 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 317 (330)
T 3hym_B 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887 999999888533
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-28 Score=263.91 Aligned_cols=304 Identities=12% Similarity=-0.001 Sum_probs=255.1
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+....+++.+++..+. ...+++.+|.++...|++++|+..|+++++.+| ..++..+|.++..+|++++|+..|
T Consensus 41 ~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 117 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117 (450)
T ss_dssp CHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456777788776665443 367889999999999999999999999999854 557888999999999999999999
Q ss_pred HHHHhcCCCcH---HHHHHH------------H----hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 005106 439 NSVISSVTPLG---WMYQER------------S----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL 499 (714)
Q Consensus 439 ~~aI~~~p~~~---~ay~~r------------g----~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl 499 (714)
+++++..|+.. .++... | ..+++++|+..|+++++++|+++.++.++|.++..+|++++|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (450)
T 2y4t_A 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 197 (450)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 99999999877 554332 1 1245599999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
..|+++++.+|+ +..+..+|.++...|++++|+..|+++++++|++.... .....+.........+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~~~~~~----- 266 (450)
T 2y4t_A 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF------AHYKQVKKLNKLIESAEE----- 266 (450)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH------HHHHHHHHHHHHHHHHHH-----
Confidence 999999999996 88899999999999999999999999999999985432 111111111111222222
Q ss_pred hccccccccc-hHHHHHHHHHhCCCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 005106 579 DRWSSVDDIG-SLSVIYQMLESDAPKGV----LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (714)
Q Consensus 579 ~~~~~~~d~~-al~~~~qaL~l~P~~~~----~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~ 653 (714)
....+++. |+..++++++++|.++. +++++|.++.++|++++|+..++++++++|++++++.++|+++..+|+
T Consensus 267 --~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 267 --LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp --HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred --HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 12223333 58899999999999954 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 005106 654 CEEGLRKAEESIQMKRSFE-AFFLKAYA 680 (714)
Q Consensus 654 ~eeAl~~ye~Ai~i~~~~~-a~~~~~~~ 680 (714)
+++|+..|+++++++|+.. ++.+.|.+
T Consensus 345 ~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999987 88888733
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=279.12 Aligned_cols=200 Identities=19% Similarity=0.247 Sum_probs=173.4
Q ss_pred ccCCCCCccEEEEEc---CeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCC----CCCHHHHHHHHHhhccCCC
Q 005106 175 MSGDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSEN----NISPSGLRIISDFSVTGSL 247 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~---~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~----~i~~~~~~~lL~f~Ytg~l 247 (714)
+..++.+|||+|+|| |++|+|||.|||++|+||++||+++|+|+.+.+|+|++. ++++++|+.+++|+|||++
T Consensus 26 l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~ 105 (279)
T 3i3n_A 26 QRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRI 105 (279)
T ss_dssp HHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEE
T ss_pred HHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCc
Confidence 456888999999998 999999999999999999999999999999999999821 5999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CC
Q 005106 248 NGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CL 319 (714)
Q Consensus 248 ~~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L 319 (714)
. ++.+++.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..+++..|...|.+++.+|+.. .|
T Consensus 106 ~-i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L 183 (279)
T 3i3n_A 106 R-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH-LSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTL 183 (279)
T ss_dssp E-EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGS
T ss_pred c-cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC-cchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcC
Confidence 9 9999999999999999999999999999999995 799999999999999999999999999888754 67
Q ss_pred ChHHHHHHhccccccchhhhccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHHhh---hhHHHH
Q 005106 320 NDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESA---ETDRQR 382 (714)
Q Consensus 320 ~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a---~~~lq~ 382 (714)
+.+.+.++++++++. |..|..++.++++|+.++...|..++.+||+. +|++ +.++.+
T Consensus 184 ~~~~l~~lL~~d~L~-----v~sE~~vf~av~~W~~~~~~~r~~~~~~ll~~-VRf~l~~~~~L~~ 243 (279)
T 3i3n_A 184 PFHLIRDWLSDLEIT-----VDSEEVLFETVLKWVQRNAEERERYFEELFKL-LRLSQMKPTYLTR 243 (279)
T ss_dssp CHHHHHHHHTCSSCC-----CSCHHHHHHHHHHHHHTTHHHHTTTHHHHHTT-SCGGGSCHHHHHH
T ss_pred CHHHHHHHhcCcCCC-----CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh-cCCCCCCHHHHHH
Confidence 889999999999985 88899999999999999987788899999988 6654 544443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-27 Score=249.13 Aligned_cols=294 Identities=18% Similarity=0.094 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc--
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY-- 458 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~-- 458 (714)
..++..+|..+...|++++|+..|+++++.+| ..++..+|.++...|++++|+..++++++.+|+.+.+|..+|..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45778999999999999999999999999854 55788899999999999999999999999999998888888753
Q ss_pred --CChhHHHHHHHHHHhcCC---CChHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 005106 459 --CEGDKRWEDLDKATALDP---TLSYPYMYR------------ASSLMTKQNVEAALAEINRILGFKLA-LECLELRFC 520 (714)
Q Consensus 459 --~~~~eAl~d~~kAi~LdP---~~~~ay~~r------------g~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~ 520 (714)
+++++|+..|+++++++| ++..++..+ |.++...|++++|+..|+++++.+|+ +..+..+|.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 677999999999999999 999999888 79999999999999999999999996 888899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC
Q 005106 521 FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600 (714)
Q Consensus 521 ~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~ 600 (714)
++..+|++++|+..|+++++++|++. .+...++.+....+++++| +..++++++.+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A------------------~~~~~~a~~~~ 218 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNT------EAFYKISTLYYQLGDHELS------------------LSEVRECLKLD 218 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhhC
Confidence 99999999999999999999999984 3444555555555666666 78899999999
Q ss_pred CCChhHHH------------HHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 601 APKGVLYF------------RQSLLLLRLNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEES 664 (714)
Q Consensus 601 P~~~~~~~------------~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~----ea~~~~G~~ly~~G~~eeAl~~ye~A 664 (714)
|.++.++. .+|.++.+.|++++|+..++++++..|+++ .++.++|.++..+|++++|+..|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 298 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999765 458899999999999999999999999988 45778999999999999999999999
Q ss_pred HhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 665 IQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 665 i~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
++++|+.. +++..|.++.... --...+..++.|++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~g----~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 299 LQMEPDNVNALKDRAEAYLIEE----MYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTT
T ss_pred HHhCcccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhc
Confidence 99999766 9999999987654 234556667777664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=257.24 Aligned_cols=295 Identities=18% Similarity=0.095 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh--
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~-- 457 (714)
...+++.+|..+...|++++|+..|+++++.+ ...++..+|.++...|++++|+..|.++++.+|+...++..+|.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 46778899999999999999999999999985 45678889999999999999999999999999999999988875
Q ss_pred --cCChhHHHHHHHHHHhcCCCCh---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 005106 458 --YCEGDKRWEDLDKATALDPTLS---YPYMYR------------ASSLMTKQNVEAALAEINRILGFKLA-LECLELRF 519 (714)
Q Consensus 458 --~~~~~eAl~d~~kAi~LdP~~~---~ay~~r------------g~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~ 519 (714)
.++.++|+..|+++++++|++. .++..+ |.++...|++++|+..|+++++++|+ +..+..+|
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3677999999999999999998 776655 77799999999999999999999996 88889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh
Q 005106 520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (714)
Q Consensus 520 ~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l 599 (714)
.+|..+|++++|+..|+++++++|++. .+...++.+....+++++| +..+++++++
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A------------------~~~~~~~~~~ 240 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLKNDNT------EAFYKISTLYYQLGDHELS------------------LSEVRECLKL 240 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHCSCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHh
Confidence 999999999999999999999999984 3444445455555556655 8899999999
Q ss_pred CCCChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 600 DAPKGVLYFRQ------------SLLLLRLNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 600 ~P~~~~~~~~~------------g~~L~~lg~~eeAl~~~~~Al~l~P~~~----ea~~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
+|.++..+... |.++...|++++|+..|+++++++|+++ .++.++|.++..+|++++|+..+++
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998776 9999999999999999999999999985 4899999999999999999999999
Q ss_pred HHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 664 SIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 664 Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
+++++|++. +|+.+|.++.... --..-+..++.|++.
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEE----MYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTT
T ss_pred HHHhCcccHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHh
Confidence 999999765 9999999987653 234455666666654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-29 Score=271.99 Aligned_cols=250 Identities=10% Similarity=-0.050 Sum_probs=191.1
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCC-hhHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 005106 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCE-GDKRWEDLDKATALDPTLSYPYMYRASSL 489 (714)
Q Consensus 415 ~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~-~~eAl~d~~kAi~LdP~~~~ay~~rg~~l 489 (714)
..++.++|.++..+|++++|++.|+++|+++|++..+|.+||. .++ +++|+..|++||+++|+++.+|++||.++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666654 243 67777778888888888888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh-hhh
Q 005106 490 MTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH-IDN 567 (714)
Q Consensus 490 ~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~-~~~ 567 (714)
..+|++++|+..|++||+++|+ +.+|++||+++..+|++++|+.+|+++++++|++.. +...++.+... .+.
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~------a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS------VWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCS
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCc
Confidence 8888888888888888888885 777888888888888888888888888888888732 33333333322 222
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005106 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN--CPEAAMRSLQLARQHAASDHERLVYEG 645 (714)
Q Consensus 568 ~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg--~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (714)
.++|. -..++..+++||+++|+++.+|+++|.++..+| ++++|+..++++ +++|++..++..+|
T Consensus 251 ~~eA~-------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La 316 (382)
T 2h6f_A 251 NDRAV-------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLV 316 (382)
T ss_dssp CSHHH-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHH
T ss_pred chHHH-------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHH
Confidence 23331 001257899999999999999999999999998 689999999998 99999999999999
Q ss_pred HHHHhcC---------CHHHHHHHHHHH-HhcCCCHH-HHHHHHHHhhcc
Q 005106 646 WILYDTS---------HCEEGLRKAEES-IQMKRSFE-AFFLKAYALADS 684 (714)
Q Consensus 646 ~~ly~~G---------~~eeAl~~ye~A-i~i~~~~~-a~~~~~~~~~~~ 684 (714)
+++..+| .+++|+..|+++ ++++|... .|..++-+|...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9999985 369999999999 99999998 788888777654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=263.30 Aligned_cols=293 Identities=10% Similarity=-0.001 Sum_probs=257.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHH
Q 005106 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSV 441 (714)
Q Consensus 364 ~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~a 441 (714)
....+++.+.+.+ .+..++..+|..+...|++++|+..|+++++.+ ...++..++.++...|++++|+..++++
T Consensus 290 ~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 290 RAEDYLSSINGLE----KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHTSTTGG----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCC----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445555544442 346778899999999999999999999999885 4557788999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH
Q 005106 442 ISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE 516 (714)
Q Consensus 442 I~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~ 516 (714)
+...|+...+|..+|. .++.++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++..|+ ...+.
T Consensus 366 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 366 VDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp HHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred HhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 9999998888888764 367799999999999999999999999999999999999999999999999995 78888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHH
Q 005106 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (714)
Q Consensus 517 ~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qa 596 (714)
.++.+|...|++++|+..|+++++++|++.. +....+.+....+++++| +..++++
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~~ 501 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPL------LLNELGVVAFNKSDMQTA------------------INHFQNA 501 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHTTCHHHH------------------HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHhCCHHHH------------------HHHHHHH
Confidence 9999999999999999999999999999843 344444455555666666 7889999
Q ss_pred HHh------CCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 597 LES------DAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 597 L~l------~P~~-~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
+++ +|.+ +.+|+++|.++.++|++++|++.++++++++|+++.++..+|.++...|++++|+..|+++++++|
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999 6765 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHH-HHHHHHHHhhcc
Q 005106 670 SFE-AFFLKAYALADS 684 (714)
Q Consensus 670 ~~~-a~~~~~~~~~~~ 684 (714)
++. ++++.|.+++.+
T Consensus 582 ~~~~~~~~l~~~~~~~ 597 (597)
T 2xpi_A 582 NEIMASDLLKRALEEN 597 (597)
T ss_dssp TCHHHHHHHHHTTC--
T ss_pred CChHHHHHHHHHHhcC
Confidence 988 999999888753
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-27 Score=256.52 Aligned_cols=319 Identities=10% Similarity=0.022 Sum_probs=245.5
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-------
Q 005106 347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAET------DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG------- 413 (714)
Q Consensus 347 ~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a~~------~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~------- 413 (714)
.+-.|.+|.+... +.+.+.+.++++.++... .....+++.++|.++..+|++++|+.+|++|+++.
T Consensus 53 ~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 53 MCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 4556788877754 567777888776654321 22235788999999999999999999999999872
Q ss_pred ---chhhHhhHHHHHHHh--CCHHHHHHHHHHHHhcCCCcHHHHHHHH-------hcCChhHHHHHHHHHHhcCCCChHH
Q 005106 414 ---HIYSIAGLARLGYIK--GHKLWAYEKLNSVISSVTPLGWMYQERS-------LYCEGDKRWEDLDKATALDPTLSYP 481 (714)
Q Consensus 414 ---~~~a~~~lg~~~~~~--G~~~~A~~~~~~aI~~~p~~~~ay~~rg-------~~~~~~eAl~d~~kAi~LdP~~~~a 481 (714)
.+..+.++|.++... +++++|+..|+++++++|+++.++..++ .+++.++|+..|++|++++|+++.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 234456667666554 5799999999999999999888776654 4567789999999999999999999
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH
Q 005106 482 YMYRASSLMTK----QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (714)
Q Consensus 482 y~~rg~~l~~l----~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~ 556 (714)
+.++|..+..+ |++++|+..|++++.++|+ +..+.++|.+|...|++++|+..|++|++++|++...+...
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---- 287 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI---- 287 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH----
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH----
Confidence 99999887665 5788999999999999996 88889999999999999999999999999999996543322
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 557 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
+.+.........+..+.............. |+..++++++++|.++.+++++|.++..+|++++|+..|++|++++|
T Consensus 288 --g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 288 --GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp --HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred --HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 222111111111111111111111112222 57899999999999999999999999999999999999999999999
Q ss_pred CChhH---HHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 636 SDHER---LVYEGW-ILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 636 ~~~ea---~~~~G~-~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++.+. +.+.|. .++.+|++++|+..|++|++++|...
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 87764 567775 45789999999999999999987653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=253.43 Aligned_cols=271 Identities=12% Similarity=0.001 Sum_probs=228.6
Q ss_pred HHHhccchHHHHH-HHHHHHhccc------hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCC
Q 005106 392 VRLLRKEYDEAEH-LFEAAVNAGH------IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCE 460 (714)
Q Consensus 392 ~~~~~g~y~eA~~-~f~~AL~~~~------~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~ 460 (714)
.+...|+|++|+. .|++|+++.+ ..++..+|.++...|++++|+..|+++++.+|+.+.+|..+|. .++
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5566789999999 9999998843 3457889999999999999999999999999999999988875 367
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHH----------------HHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLE----------------LRFCFFL 523 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~----------------~R~~~~~ 523 (714)
+++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ...+. ..+.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 799999999999999999999999999999999999999999999999996 44333 345555
Q ss_pred hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC
Q 005106 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (714)
Q Consensus 524 ~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~ 603 (714)
..|++++|+..|+++++++|+... ..+...++.+....+++++| +..++++++++|.+
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~----~~~~~~l~~~~~~~g~~~~A------------------~~~~~~al~~~~~~ 250 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSID----PDVQCGLGVLFNLSGEYDKA------------------VDCFTAALSVRPND 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCC----HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTC
T ss_pred hcccHHHHHHHHHHHHHhCcCccc----HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCC
Confidence 999999999999999999999310 23444455555555666666 88999999999999
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------------
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF------------ 671 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~------------ 671 (714)
+.+++++|.++..+|++++|+..|+++++++|+++.+++++|.+++.+|++++|+..|++++++.|+.
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHhhccC
Q 005106 672 EAFFLKAYALADSS 685 (714)
Q Consensus 672 ~a~~~~~~~~~~~~ 685 (714)
.+|...|.++...+
T Consensus 331 ~~~~~l~~~~~~~g 344 (368)
T 1fch_A 331 NIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 58999998887554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=247.34 Aligned_cols=260 Identities=13% Similarity=-0.009 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
..+++++|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..++++++++|+.+.++..+|.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4556789999999999999999999999985 45578889999999999999999999999999999999988875
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHH
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYM----------------YRASSLMTKQNVEAALAEINRILGFKLA---LECLEL 517 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~----------------~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~~ 517 (714)
.++.++|+..|+++++++|++..++. .+|.++ ..|++++|+..|+++++++|+ +..+..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 36779999999999999999998887 567776 999999999999999999997 677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH
Q 005106 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 597 (714)
Q Consensus 518 R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL 597 (714)
+|.++...|++++|+..|+++++++|++. .+...++.+....+++++| +..+++++
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~g~~~~A------------------~~~~~~al 278 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDY------LLWNKLGATLANGNQSEEA------------------VAAYRRAL 278 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHH
Confidence 99999999999999999999999999983 3445555555566666666 88999999
Q ss_pred HhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-----------HERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 598 ~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-----------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+++|.++.+++++|.++.++|++++|+..+++|++++|++ +.++.++|.++..+|++++|...++++++
T Consensus 279 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 279 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999 89999999999999999999999998876
Q ss_pred c
Q 005106 667 M 667 (714)
Q Consensus 667 i 667 (714)
+
T Consensus 359 ~ 359 (368)
T 1fch_A 359 T 359 (368)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=257.01 Aligned_cols=304 Identities=11% Similarity=0.020 Sum_probs=241.8
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHH
Q 005106 350 LLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYI 427 (714)
Q Consensus 350 ~l~~V~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~ 427 (714)
-+..+..... +.+.....++++++..++. ..+++++|.++...|++++|+..|+++++++| ..++..+|.++..
T Consensus 30 ~~g~~~~~~g-~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 30 NRGNHFFTAK-NFNEAIKYYQYAIELDPNE---PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHTT-CCC-CHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3333433332 5667778888877655433 57788999999999999999999999998854 4567788999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHH------------------------------------------------------
Q 005106 428 KGHKLWAYEKLNSVISSVTPLGWMYQ------------------------------------------------------ 453 (714)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~p~~~~ay~------------------------------------------------------ 453 (714)
+|++++|+..|+ ++...|+....+.
T Consensus 106 ~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 999999999885 7766665332210
Q ss_pred --------------HHHh------------cCChhHHHHHHHHHHhcCCCChH-------HHHHHHHHHHhcCCHHHHHH
Q 005106 454 --------------ERSL------------YCEGDKRWEDLDKATALDPTLSY-------PYMYRASSLMTKQNVEAALA 500 (714)
Q Consensus 454 --------------~rg~------------~~~~~eAl~d~~kAi~LdP~~~~-------ay~~rg~~l~~l~r~~eAl~ 500 (714)
..+. .+.+++|+..|+++++.+|+++. +|..+|.++...|++++|+.
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 0000 01348899999999999999865 68889999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 501 EINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 501 ~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
.|+++++++|++..+..+|.++...|++++|+..|+++++++|++.. +....+.+....+++++|
T Consensus 265 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A--------- 329 (537)
T 3fp2_A 265 LLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP------TYYHRGQMYFILQDYKNA--------- 329 (537)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHH---------
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHhcCCHHHH---------
Confidence 99999999999888888999999999999999999999999999843 445555555566666666
Q ss_pred cccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 581 ~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
+..++++++++|.++.+++++|.++..+|++++|+..++++++++|++++++.++|.++..+|++++|+..
T Consensus 330 ---------~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 330 ---------KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp ---------HHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHH-------HHHHHHHHhh
Q 005106 661 AEESIQMKRSFE-------AFFLKAYALA 682 (714)
Q Consensus 661 ye~Ai~i~~~~~-------a~~~~~~~~~ 682 (714)
|++++++.|+.. .++.+|.++.
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 999999987653 2455555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=255.71 Aligned_cols=335 Identities=13% Similarity=-0.003 Sum_probs=233.9
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKL 438 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~ 438 (714)
+.+.....+++++...+ +..+++++|.++...|++++|+..|+++++.+| ..++..+|.++..+|++++|+..|
T Consensus 21 ~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp CHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45566667777665544 256777888888888888888888888888754 346777888888888888888888
Q ss_pred HHHHhcCCC-----------------------------------------------------------------------
Q 005106 439 NSVISSVTP----------------------------------------------------------------------- 447 (714)
Q Consensus 439 ~~aI~~~p~----------------------------------------------------------------------- 447 (714)
++++...|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 888777652
Q ss_pred --------cHHHHHHHHh-------cCChhHHHHHHHHHHh-----c--C-------CCChHHHHHHHHHHHhcCCHHHH
Q 005106 448 --------LGWMYQERSL-------YCEGDKRWEDLDKATA-----L--D-------PTLSYPYMYRASSLMTKQNVEAA 498 (714)
Q Consensus 448 --------~~~ay~~rg~-------~~~~~eAl~d~~kAi~-----L--d-------P~~~~ay~~rg~~l~~l~r~~eA 498 (714)
.+.++..+|. .+++++|+..|+++++ + + |.++.+|..+|.++...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 2455555543 3445888888888888 6 3 55567788888888888888888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh-hhHHHHHHHHHHHHhhhhhhH-------
Q 005106 499 LAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE-GRVAASQLHMLVREHIDNWTI------- 570 (714)
Q Consensus 499 l~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~-~~~~a~~~~~~l~~~~~~~~~------- 570 (714)
+..|+++++.+|++..+..+|.++...|++++|+..|+++++++|++...+ ..+.+....+........+++
T Consensus 257 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 257 HEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336 (514)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence 888888888888755566677888888888888888888888888774422 112122221111111111111
Q ss_pred -HHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh------HHH
Q 005106 571 -ADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE------RLV 642 (714)
Q Consensus 571 -A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e------a~~ 642 (714)
..+|..+.......+++. |+..++++++.+|.++.+++++|.++..+|++++|+..++++++++|++.+ ++.
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 234444455555555655 677888888888888888888888888888888888888888888888865 888
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 005106 643 YEGWILYD---TSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 643 ~~G~~ly~---~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
++|.+++. +|++++|+..|++++.+.|+.. +++..|.++...+ --...+..++.|++
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE----DIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc----CHHHHHHHHHHHHH
Confidence 88888888 8888888888888888888766 7777777776543 22334444555543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-27 Score=249.22 Aligned_cols=260 Identities=12% Similarity=-0.041 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
...++.+|..+...|++++|+..|+++++.+ ...++..+|.++..+|++++|+..|+++++++|+.+.+|.++|.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3446677777777788888888888877764 34456677777777777777777777777777776666666654
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHH----------HHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYMYR----------ASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFL 523 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~~r----------g~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~ 523 (714)
.+++++|+..|+++++++|++..++.++ |.++..+|++++|+..|+++++++|+ +..+.++|.++.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 2455777777777777777766666555 77777777777777777777777774 556666777777
Q ss_pred hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC
Q 005106 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (714)
Q Consensus 524 ~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~ 603 (714)
.+|++++|+..|+++++++|++. .+...++.+....+++++| +..++++++++|.+
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A------------------~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDY------SLWNRLGATLANGDRSEEA------------------VEAYTRALEIQPGF 280 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhcCCCc
Confidence 77777777777777777777762 2333344444444444444 66677777777777
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------------DHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------------~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+.+++++|.++..+|++++|+..|++|++++|+ +..++.++|.++..+|+.+.+....++++.
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 777777777777777777777777777777766 356667777777777777766666555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=246.30 Aligned_cols=245 Identities=10% Similarity=-0.059 Sum_probs=211.4
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~ 491 (714)
.++..+|.++...|++++|+..|+++++.+|+.+.+|..+|. .+++++|+..|++|++++|+++.+|.++|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 348889999999999999999999999999999999999875 3677999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-HHHHHHH----------HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 005106 492 KQNVEAALAEINRILGFKLA-LECLELR----------FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~-~~~~~~R----------~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~ 560 (714)
+|++++|+..|+++++++|+ ...+..+ +.++..+|++++|+..|+++++++|+... ..+...++.
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~ 221 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGV 221 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHH
Confidence 99999999999999999996 4444444 78999999999999999999999999311 224444555
Q ss_pred HHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 005106 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (714)
Q Consensus 561 l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea 640 (714)
+....+++++| +..++++++++|.++.+|+++|.++..+|++++|+..|++|++++|+++.+
T Consensus 222 ~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 283 (365)
T 4eqf_A 222 LFHLSGEFNRA------------------IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283 (365)
T ss_dssp HHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 55555666666 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------HHHHHHHHHHhh
Q 005106 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRS-------------FEAFFLKAYALA 682 (714)
Q Consensus 641 ~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~-------------~~a~~~~~~~~~ 682 (714)
++++|.++..+|++++|+..|++|+++.|+ ..+|...|.++.
T Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999987 346777766653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=253.84 Aligned_cols=245 Identities=10% Similarity=0.013 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCC-HHHHHHHHHHHHhcCCCcHHHHHHHHh-
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGH-KLWAYEKLNSVISSVTPLGWMYQERSL- 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~-~~~A~~~~~~aI~~~p~~~~ay~~rg~- 457 (714)
...+++++|.++...|++++|+..|++||+++| ..+|.++|.++..+|+ +++|+..|+++|+++|++..+|.+||.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467889999999999999999999999999954 5678899999999997 999999999999999999999999985
Q ss_pred ---cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh-cCCHHHH-
Q 005106 458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA-LEDYQAA- 531 (714)
Q Consensus 458 ---~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~-lgd~e~A- 531 (714)
.+++++|+.+|++||+++|+++.+|++||.++..+|++++|+..|+++|+++|+ +.+|++||.++.. .|.+++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 367799999999999999999999999999999999999999999999999996 8999999999999 5555888
Q ss_pred ----HHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh--hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 532 ----LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID--NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 532 ----l~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
+..|++|++++|++.. +...++.+..... ++++ ++..+.++ +.+|.++.
T Consensus 256 ~~~el~~~~~Al~l~P~~~~------a~~~l~~ll~~~g~~~~~~------------------a~~~~~~~-~~~p~~~~ 310 (382)
T 2h6f_A 256 LEREVQYTLEMIKLVPHNES------AWNYLKGILQDRGLSKYPN------------------LLNQLLDL-QPSHSSPY 310 (382)
T ss_dssp HHHHHHHHHHHHHHSTTCHH------HHHHHHHHHTTTCGGGCHH------------------HHHHHHHH-TTTCCCHH
T ss_pred HHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHccCccchHH------------------HHHHHHHh-ccCCCCHH
Confidence 5999999999999943 3333332222211 2233 36677777 99999999
Q ss_pred HHHHHHHHHHHcC---------ChHHHHHHHHHH-HHhCCCChhHHHHHHHHHHhc
Q 005106 606 LYFRQSLLLLRLN---------CPEAAMRSLQLA-RQHAASDHERLVYEGWILYDT 651 (714)
Q Consensus 606 ~~~~~g~~L~~lg---------~~eeAl~~~~~A-l~l~P~~~ea~~~~G~~ly~~ 651 (714)
++..+|.++.++| ..++|+..|+++ ++++|.....+.++|..+..+
T Consensus 311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9999999999985 358999999999 999999999999999988765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-26 Score=251.37 Aligned_cols=278 Identities=12% Similarity=0.093 Sum_probs=217.7
Q ss_pred cchHHHHHHHHHHHhccch---------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhH
Q 005106 397 KEYDEAEHLFEAAVNAGHI---------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDK 463 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~---------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~e 463 (714)
|++++|+..|+++++.+|. .++..+|.++...|++++|+..+.++++..|+ ..++..+|.. +++++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHH
Confidence 4666666666677666433 24677888999999999999999999999998 8888888753 56699
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005106 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 464 Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~ 542 (714)
|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++
T Consensus 295 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999996 7888889999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHH------HHHHHHHH
Q 005106 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF------RQSLLLLR 616 (714)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~------~~g~~L~~ 616 (714)
|++.. +....+.+....+++++| +..++++++++|.++..+. ++|.++.+
T Consensus 375 ~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 375 PTLPE------VPTFFAEILTDRGDFDTA------------------IKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp TTCTH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred CCChH------HHHHHHHHHHHhCCHHHH------------------HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 99843 344445555555666666 7889999999998887754 55688888
Q ss_pred c----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH-H-----HHHHH
Q 005106 617 L----------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF-F-----LKAYA 680 (714)
Q Consensus 617 l----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~-~-----~~~~~ 680 (714)
+ |++++|+..++++++++|++++++.++|+++..+|++++|+..|++++++.|+.... - ..+.+
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 510 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKI 510 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHhHHHHHHH
Confidence 8 999999999999999999999999999999999999999999999999999997722 1 11222
Q ss_pred hhccCCCCCchhhHHHHHH
Q 005106 681 LADSSQDSSCSSTVVSLLE 699 (714)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~ 699 (714)
......||+-+..+.+++.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~ 529 (537)
T 3fp2_A 511 QKRLRADPIISAKMELTLA 529 (537)
T ss_dssp HHHHHTC------------
T ss_pred HHhccccHHHHHHHhhHHH
Confidence 2233456777776665554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-26 Score=249.88 Aligned_cols=275 Identities=16% Similarity=0.123 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHh---ccchHHHHHHHHHHHh-----c-----------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 005106 383 LLAFHQLGCVRLL---RKEYDEAEHLFEAAVN-----A-----------GHIYSIAGLARLGYIKGHKLWAYEKLNSVIS 443 (714)
Q Consensus 383 ~~A~~~lG~~~~~---~g~y~eA~~~f~~AL~-----~-----------~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~ 443 (714)
..++..+|..... .|++++|+..|+++++ + ....++..+|.++...|++++|+..++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5667788888887 8999999999999999 4 3455778899999999999999999999999
Q ss_pred cCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHH
Q 005106 444 SVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELR 518 (714)
Q Consensus 444 ~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R 518 (714)
..|+ +.++..+|. .++.++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+..+
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (514)
T 2gw1_A 266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344 (514)
T ss_dssp HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 9999 888888875 356699999999999999999999999999999999999999999999999996 7888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHH
Q 005106 519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (714)
Q Consensus 519 ~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~ 598 (714)
|.++..+|++++|+..|+++++++|++.. +....+.+....+++++| +..++++++
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A------------------~~~~~~a~~ 400 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRKFPEAPE------VPNFFAEILTDKNDFDKA------------------LKQYDLAIE 400 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHSTTCSH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHcccCHH------HHHHHHHHHHHCCCHHHH------------------HHHHHHHHH
Confidence 99999999999999999999999999843 444445555555566666 788999999
Q ss_pred hCCCChh------HHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 599 SDAPKGV------LYFRQSLLLLR---LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 599 l~P~~~~------~~~~~g~~L~~---lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
++|.++. +++++|.++.. +|++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 9999976 99999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CHH-HHHHHHHHhh
Q 005106 670 SFE-AFFLKAYALA 682 (714)
Q Consensus 670 ~~~-a~~~~~~~~~ 682 (714)
++. ++....+..+
T Consensus 481 ~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 481 TMEEKLQAITFAEA 494 (514)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 988 6666655544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=237.79 Aligned_cols=263 Identities=10% Similarity=-0.040 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
...++.+|..+...|++++|+..|+++++.+| ..++..+|.++...|++++|+..+.++++..|+.+.++..+|.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999854 5567889999999999999999999999999999888888875
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYMYR--------------AS-SLMTKQNVEAALAEINRILGFKLA-LECLELRFC 520 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~~r--------------g~-~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~ 520 (714)
.++.++|+..|+++++++|++...+..+ |. ++...|++++|+..++++++.+|+ +..+..+|.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3667999999999999999999999988 77 799999999999999999999996 888889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC
Q 005106 521 FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600 (714)
Q Consensus 521 ~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~ 600 (714)
++..+|++++|+..|+++++++|++.. +....+.+....+++++| +..++++++.+
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~ 236 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQ------LWNKLGATLANGNRPQEA------------------LDAYNRALDIN 236 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcC
Confidence 999999999999999999999999843 444455555555666666 78899999999
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------------DHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~------------~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
|.++.+++++|.++..+|++++|+..++++++++|+ +..++.++|.++..+|++++|...+++++++-
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 89999999999999999999999999988875
Q ss_pred C
Q 005106 669 R 669 (714)
Q Consensus 669 ~ 669 (714)
|
T Consensus 317 ~ 317 (327)
T 3cv0_A 317 A 317 (327)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=246.20 Aligned_cols=266 Identities=11% Similarity=-0.043 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc---------c--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC------
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---------H--IYSIAGLARLGYIKGHKLWAYEKLNSVISSV------ 445 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---------~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~------ 445 (714)
+..++++|.++..+|++++|++.|++|+++. + ..++.++|.+|..+|++++|+..+++++++.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4566789999999999999999999999861 1 2346789999999999999999999999863
Q ss_pred --CCcHHHHHHHHh----c--CChhHHHHHHHHHHhcCCCChHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCC-HH
Q 005106 446 --TPLGWMYQERSL----Y--CEGDKRWEDLDKATALDPTLSYPYMYRASSLM---TKQNVEAALAEINRILGFKLA-LE 513 (714)
Q Consensus 446 --p~~~~ay~~rg~----~--~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~---~l~r~~eAl~~~~kAL~l~P~-~~ 513 (714)
+..+.+|.+.|. . +.+++|+..|++|++++|+++.++.++|.++. ..++.++|+..|++||+++|+ +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 345677766653 1 23599999999999999999999999999855 457889999999999999996 77
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 514 CLELRFCFFL----ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 514 ~~~~R~~~~~----~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
.+.++|..+. ..|++++|+..|+++++++|++.. +...++.+.....++++|
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~------~~~~lg~~~~~~~~~~~A------------------ 266 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD------VLRSAAKFYRRKDEPDKA------------------ 266 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH------HHHHHHHHHHHTTCHHHH------------------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHHcCchHHH------------------
Confidence 7777776544 457889999999999999999843 444555555566666666
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLR-------------------LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~-------------------lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
+..++++++++|.++.+++++|.++.. .+.+++|+..+++|++++|+++.++.++|.++..
T Consensus 267 ~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 267 IELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 889999999999999999999998754 3457889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCHH
Q 005106 651 TSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 651 ~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+|++++|+..|++|++++|+..
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHH
T ss_pred hccHHHHHHHHHHHHhcCCCCh
Confidence 9999999999999999998875
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-25 Score=249.46 Aligned_cols=289 Identities=8% Similarity=-0.037 Sum_probs=250.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCCh
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEG 461 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~ 461 (714)
..++..+...|++++|+..|+++++. +...++..+|.++...|++++|++.|+++++..|++..++..++. .++.
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence 33467777899999999999999886 456678889999999999999999999999999876655554432 2555
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|+++++.+|++..+|..+|.+|...|++++|+..|+++++++|+ ...|..++.+|...|++++|+..|+++++
T Consensus 356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999996 88899999999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ 620 (714)
++|++.. +...++.+....+++++| +..++++++++|.++.+|+.+|.++.+.|++
T Consensus 436 ~~~~~~~------~~~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 436 LFQGTHL------PYLFLGMQHMQLGNILLA------------------NEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp TTTTCSH------HHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred hCccchH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 9998743 333344444445556665 8899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchh
Q 005106 621 EAAMRSLQLARQH------AASD-HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSS 692 (714)
Q Consensus 621 eeAl~~~~~Al~l------~P~~-~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~ 692 (714)
++|+..+++++++ +|++ +.++.++|+++...|++++|+..|++++++.|+.. +|+..|.++...+ --.
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~~ 567 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK----IPG 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT----CHH
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC----CHH
Confidence 9999999999999 6775 78999999999999999999999999999999765 9999999988765 234
Q ss_pred hHHHHHHHhhc
Q 005106 693 TVVSLLEDALK 703 (714)
Q Consensus 693 ~~~~~~~~~~~ 703 (714)
..++.++++++
T Consensus 568 ~A~~~~~~~l~ 578 (597)
T 2xpi_A 568 LAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55666666664
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-25 Score=229.32 Aligned_cols=275 Identities=12% Similarity=-0.045 Sum_probs=234.3
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhC-CHHHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKG-HKLWAYEK 437 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G-~~~~A~~~ 437 (714)
+.+....+++.+.+..+.. ..++..++.++...|++++|+..|+++++.+| ..++..+|.++...| ++++|+..
T Consensus 37 ~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 113 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTC---TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4566677777766544432 34566788899999999999999999999854 557888999999999 99999999
Q ss_pred HHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H
Q 005106 438 LNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L 512 (714)
Q Consensus 438 ~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~ 512 (714)
+.++++..|+.+.+|..+|.. +++++|+..|++|++++|++..++.++|.++..+|++++|+..|+++++++|+ +
T Consensus 114 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 193 (330)
T 3hym_B 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193 (330)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence 999999999988888888753 67799999999999999999999999999999999999999999999999996 8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh---hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF---EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 513 ~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~---~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
..+..+|.++..+|++++|+..|++++++.|..... .....+...++.+....+++++|
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------------------ 255 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA------------------ 255 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH------------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH------------------
Confidence 888999999999999999999999999997543110 11133455555555566666666
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH-HhcCCHHH
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL-YDTSHCEE 656 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~l-y~~G~~ee 656 (714)
+..++++++++|.++.+++++|.++..+|++++|+..++++++++|+++.++..+|+++ ..+|+.+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchhc
Confidence 88999999999999999999999999999999999999999999999999999999999 67777653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=224.19 Aligned_cols=179 Identities=17% Similarity=0.105 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc-----------CCHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL-----------EDYQ 529 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l-----------gd~e 529 (714)
++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+ |+++
T Consensus 22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~ 101 (217)
T 2pl2_A 22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE 101 (217)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH
Confidence 44445555555555555555555555555555555555555555555554 45555555555555 5666
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~ 609 (714)
+|+..|+++++++|++. .+...++.+....+++++| +..++++++++ .++.++++
T Consensus 102 ~A~~~~~~al~~~P~~~------~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 102 QALSVLKDAERVNPRYA------PLHLQRGLVYALLGERDKA------------------EASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCChHHH------------------HHHHHHHHhcc-cchHHHHH
Confidence 66666666666666552 2333333333344444444 55566666666 66778889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
+|.++..+|++++|+..|++|++++|++++++.++|.++..+|++++|+..|+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999875
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-26 Score=222.48 Aligned_cols=143 Identities=21% Similarity=0.304 Sum_probs=132.3
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+.+++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+.+..|.|+ ++++++|+.+|+|+|||++. ++.++
T Consensus 28 l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~~l~~~Yt~~~~-~~~~~ 104 (172)
T 3htm_A 28 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKM 104 (172)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEEC--SSCHHHHHHHHHHHHHSCCT-TGGGT
T ss_pred HHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEec--CCCHHHHHHHHHHHhCCCCC-CcHHH
Confidence 4567889999999999999999999999999999999999999999999999 49999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCCh
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND 321 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~~ 321 (714)
+.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..+++..|...|.+++.+|+...+..
T Consensus 105 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s 170 (172)
T 3htm_A 105 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLET 170 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999985 7999999999999999999999999999999876543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=223.64 Aligned_cols=246 Identities=15% Similarity=0.043 Sum_probs=217.4
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~ 491 (714)
..+..+|..+...|++++|+..++++++.+|+.+.++..+|. .++.++|+..|+++++++|++..+|.++|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999888874 3677999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-HHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 492 KQNVEAALAEINRILGFKLA-LECLELR--------------FC-FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~-~~~~~~R--------------~~-~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
+|++++|+..|+++++.+|+ ...+..+ +. ++...|++++|+..|+++++++|++. .+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~ 175 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA------QLH 175 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH------HHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH------HHH
Confidence 99999999999999999996 4545444 54 68899999999999999999999973 344
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
..++.+....+++++| +..++++++.+|.++.+++++|.++..+|++++|+..++++++++|
T Consensus 176 ~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSA------------------AANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhccHHHH------------------HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4455555555666666 8899999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------HH-HHHHHHHHhhccC
Q 005106 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS------------FE-AFFLKAYALADSS 685 (714)
Q Consensus 636 ~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~------------~~-a~~~~~~~~~~~~ 685 (714)
++..+++++|.+++.+|++++|+..|++++++.|+ .. +|+..|.++....
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999 55 9999999887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=215.71 Aligned_cols=238 Identities=13% Similarity=0.087 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc-chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~-~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
.+.++..+|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..++++++..|+..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 72 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR----------- 72 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-----------
Confidence 46677888999999999999999999888774 455677788888888887777776666555544321
Q ss_pred hhHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~---~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
|+. +.+|.++|.++..+|++++|+..|+++++++|+.. ++..+|++++|+..+++
T Consensus 73 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 73 ---------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEA 130 (258)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHH
T ss_pred ---------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHH
Confidence 111 57778888888888888888888888888887743 45566778888888888
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
+++.+|++. .+....+.+....+++++| +..++++++.+|.++.+++++|.++..+
T Consensus 131 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 186 (258)
T 3uq3_A 131 EAYVNPEKA------EEARLEGKEYFTKSDWPNA------------------VKAYTEMIKRAPEDARGYSNRAAALAKL 186 (258)
T ss_dssp HHHCCHHHH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHcCcchH------HHHHHHHHHHHHhcCHHHH------------------HHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 888888763 3444444444555555555 6778888888888889999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCHH-HHHH
Q 005106 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK------RSFE-AFFL 676 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~------~~~~-a~~~ 676 (714)
|++++|+..++++++++|++++++.++|.++..+|++++|+..|++++++. |+.. ++..
T Consensus 187 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 6665 4433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-24 Score=222.42 Aligned_cols=249 Identities=18% Similarity=0.135 Sum_probs=209.3
Q ss_pred HHhccchHHHHHHHHHHHhccchh---hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHH
Q 005106 393 RLLRKEYDEAEHLFEAAVNAGHIY---SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRW 465 (714)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~~~~~~---a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl 465 (714)
.+..|+|.+|+..+++.....|.. +...++++|..+|+++.|+..+++. .|+...++...+.+ ++.++|+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 456899999999999877765543 5577899999999999999988652 55555666655442 4569999
Q ss_pred HHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005106 466 EDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 466 ~d~~kAi~L--dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~ 542 (714)
..|+++++. +|+++.+++.+|.++...|++++|+..|++ | +++++..++.++..+|++++|+..|+++++++
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 999999875 699999999999999999999999999999 6 58888999999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH
Q 005106 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (714)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e 621 (714)
|++.... + +.+|..++.. .+++. |+..|+++++.+|.++.+|+++|.++.++|+++
T Consensus 161 p~~~~~~-------l-------------~~a~~~l~~~---~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 161 EDATLTQ-------L-------------ATAWVSLAAG---GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp TTCHHHH-------H-------------HHHHHHHHHC---TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCcHHHH-------H-------------HHHHHHHHhC---chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 9973211 0 1122222211 12222 488999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCHH
Q 005106 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQMKRSFE 672 (714)
Q Consensus 622 eAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA-l~~ye~Ai~i~~~~~ 672 (714)
+|+..+++|++++|+++++++++|.++..+|+.+++ ...++++++++|+..
T Consensus 218 eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 218 AAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999999999999875 578899999999987
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-24 Score=213.46 Aligned_cols=186 Identities=17% Similarity=0.036 Sum_probs=167.0
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
.|+++.+|+++|.++...|++++|+..|+++|+++|+ +.++.++|.++..+|++++|+..|+++++++|++..
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------ 74 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------ 74 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------
Confidence 3889999999999999999999999999999999996 899999999999999999999999999999999954
Q ss_pred HHHHHHHHHHhh-----------hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHH
Q 005106 554 ASQLHMLVREHI-----------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA 622 (714)
Q Consensus 554 a~~~~~~l~~~~-----------~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee 622 (714)
+...++.+.... +++++| +..++++++++|+++.+|+++|.++..+|++++
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQA------------------LSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Confidence 344444444444 555555 889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
|+..|++|++++ +++++++++|.++..+|++++|+..|+++++++|++. ++++.|.++....
T Consensus 137 A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 137 AEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 999999999999 9999999999999999999999999999999999988 9999999987754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=218.60 Aligned_cols=231 Identities=12% Similarity=-0.011 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC--CCc-HHHHHHHHh-
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSV--TPL-GWMYQERSL- 457 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~--p~~-~~ay~~rg~- 457 (714)
..++.+|..+...|++++|+..|+++++.+| ..++..+|.++...|++++|+..++++++.. +.. +.+|..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3456788888888899999999998888854 4467788888888888888888877777722 111 222333332
Q ss_pred ---cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005106 458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALC 533 (714)
Q Consensus 458 ---~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~ 533 (714)
.++.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|......+++++|+.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 133355555555555555555555555555555555555555555555555553 4444445522222234444444
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH
Q 005106 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (714)
Q Consensus 534 d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~ 613 (714)
. ++++++++|.++.+++++|.+
T Consensus 164 ~----------------------------------------------------------~~~a~~~~p~~~~~~~~~~~~ 185 (272)
T 3u4t_A 164 S----------------------------------------------------------FVKVLELKPNIYIGYLWRARA 185 (272)
T ss_dssp H----------------------------------------------------------HHHHHHHSTTCHHHHHHHHHH
T ss_pred H----------------------------------------------------------HHHHHHhCccchHHHHHHHHH
Confidence 4 455555555555556666666
Q ss_pred HHHcCC---hHHHHHHHHHHHHhC---CCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 614 LLRLNC---PEAAMRSLQLARQHA---ASD-----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 614 L~~lg~---~eeAl~~~~~Al~l~---P~~-----~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+..+|+ +++|+..|++|+++. |+. .+++.++|.++..+|++++|+..|+++++++|+++
T Consensus 186 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 666666 666666666666665 432 25666666666666666666666666666666665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=213.15 Aligned_cols=238 Identities=9% Similarity=-0.068 Sum_probs=196.2
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--c---hhhHhhHHHHHHHhCCHHHHH
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--H---IYSIAGLARLGYIKGHKLWAY 435 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~---~~a~~~lg~~~~~~G~~~~A~ 435 (714)
+.+.....++.+++..+.. ..+++.+|.++...|++++|+..|+++++.. + ..++..+|.++..+|++++|+
T Consensus 18 ~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 4556777787766655432 3478899999999999999999999999952 1 224788999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 436 EKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRA-SSLMTKQNVEAALAEINRILGFKL 510 (714)
Q Consensus 436 ~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg-~~l~~l~r~~eAl~~~~kAL~l~P 510 (714)
..|+++++.+|+.+.+|.++|. .+++++|+..|++|++++|+++.+|.++| .++. .+++++|+..|+++++++|
T Consensus 95 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p 173 (272)
T 3u4t_A 95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSFVKVLELKP 173 (272)
T ss_dssp HHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999988875 36779999999999999999999999999 5555 5599999999999999999
Q ss_pred C-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccc
Q 005106 511 A-LECLELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD 586 (714)
Q Consensus 511 ~-~~~~~~R~~~~~~lgd---~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d 586 (714)
+ +..+..+|.++..+|+ +++|+..|++++++...... . .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~----------------~----------------- 216 (272)
T 3u4t_A 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA----K----------------Y----------------- 216 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG----G----------------G-----------------
T ss_pred cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc----c----------------c-----------------
Confidence 7 7888899999999999 89999999999988644310 0 0
Q ss_pred cchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 005106 587 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (714)
Q Consensus 587 ~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G 652 (714)
.+....+++++|.++..+|++++|+..+++|++++|++..+.-.+|++.-..|
T Consensus 217 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 217 -------------KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred -------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 00113568889999999999999999999999999999999999988875544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=230.25 Aligned_cols=291 Identities=12% Similarity=-0.023 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCc
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPL 448 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------~p~~ 448 (714)
.....++.+|..+...|++++|+..|++|+++++. .++..+|.++..+|++++|+..+++++++ .+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 45677789999999999999999999999998544 46788999999999999999999999998 5666
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhc------CCCChHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 005106 449 GWMYQERSL----YCEGDKRWEDLDKATAL------DPTLSYPYMYRASSLMTKQN-----------------VEAALAE 501 (714)
Q Consensus 449 ~~ay~~rg~----~~~~~eAl~d~~kAi~L------dP~~~~ay~~rg~~l~~l~r-----------------~~eAl~~ 501 (714)
+.++..+|. .+++++|+..|++|+++ .|....+|.++|.++..+|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 677777764 25669999999999999 78888999999999999999 9999999
Q ss_pred HHHHHhcCC------C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 005106 502 INRILGFKL------A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (714)
Q Consensus 502 ~~kAL~l~P------~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~ 574 (714)
|++++++.+ . ...+.++|.++..+|++++|+..|++++++.|++........+...++.+....+++++|
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--- 282 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA--- 282 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH---
Confidence 999998742 1 346777899999999999999999999999987543333344555555555555566555
Q ss_pred HhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHH
Q 005106 575 LQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLV 642 (714)
Q Consensus 575 ~~l~~~~~~~~d~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~ 642 (714)
+..+++++++.|.. +.++.++|.++..+|++++|+..+++|+++.++. +.++.
T Consensus 283 ---------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 347 (411)
T 4a1s_A 283 ---------------AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347 (411)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 78899999998865 7889999999999999999999999999997765 45999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCC
Q 005106 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689 (714)
Q Consensus 643 ~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~ 689 (714)
++|.++..+|++++|+..|++|+++.++...-...+-..-+++.+.+
T Consensus 348 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 394 (411)
T 4a1s_A 348 SLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXXXXXXXXXXXXXXX 394 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 99999999999999999999999999988866666666655554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-23 Score=208.22 Aligned_cols=231 Identities=13% Similarity=0.115 Sum_probs=202.3
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc---------hhhHhh
Q 005106 350 LLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---------IYSIAG 420 (714)
Q Consensus 350 ~l~~V~~d~~~rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~---------~~a~~~ 420 (714)
.+..+..... +.+.....++.+.... ....+++.+|.++...|++++|+..|++++++.+ ..++..
T Consensus 10 ~~g~~~~~~~-~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 10 AEGNKFYKAR-QFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 3444444432 5667777887766654 3467889999999999999999999999999854 467889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~ 500 (714)
+|.++...|++++|+..+++++.+.|+ +..+...|.+ ++|+..|++++..+|+++.+|.++|.++..+|++++|+.
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLRNA---EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-hHHHHHHhHH---HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999876 8889999888 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 005106 501 EINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (714)
Q Consensus 501 ~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~ 579 (714)
.|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------------------------- 206 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---------------------------------- 206 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH----------------------------------
Confidence 99999999996 8888999999999999999999888888877775
Q ss_pred ccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCChhHHHHHHHH
Q 005106 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA------ASDHERLVYEGWI 647 (714)
Q Consensus 580 ~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~------P~~~ea~~~~G~~ 647 (714)
+.+|+++|.++..+|++++|+..+++|++++ |++.+++..++.+
T Consensus 207 ------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 207 ------------------------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred ------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3567889999999999999999999999999 9998888777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=201.95 Aligned_cols=174 Identities=11% Similarity=0.084 Sum_probs=149.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
+.+..|+++|.++..+|++++|+..|++||+++|+ +.++..+|.++..+|++++|+..+++++..+|++.. +.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~ 76 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE------AY 76 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------HH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH------HH
Confidence 45678888888888888888888888888888885 788888888888888888888888888888888733 34
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
...+.+.....+++.| ...+.+++.++|.++.+++.+|.++.++|++++|+..|+++++++|
T Consensus 77 ~~~~~~~~~~~~~~~a------------------~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 77 YILGSANFMIDEKQAA------------------IDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 4444444455555555 6778888999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 636 ~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
+++++++++|.++..+|++++|+..|++|++++|+.+-|
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHH
Confidence 999999999999999999999999999999999987544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-24 Score=227.39 Aligned_cols=285 Identities=12% Similarity=-0.035 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGW 450 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------~p~~~~ 450 (714)
..++..+|..+...|++++|+..|++|++.++. .++..+|.++...|++++|+..+++++.+ .|..+.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 456788999999999999999999999998543 46778999999999999999999999887 344566
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCC--------------------HHHHHH
Q 005106 451 MYQERSL----YCEGDKRWEDLDKATALDPTL------SYPYMYRASSLMTKQN--------------------VEAALA 500 (714)
Q Consensus 451 ay~~rg~----~~~~~eAl~d~~kAi~LdP~~------~~ay~~rg~~l~~l~r--------------------~~eAl~ 500 (714)
++..+|. .+++++|+..|++|+++.|.. +.++.++|.++..+|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6666654 256699999999999998876 4599999999999999 999999
Q ss_pred HHHHHHhc------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 005106 501 EINRILGF------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573 (714)
Q Consensus 501 ~~~kAL~l------~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~ 573 (714)
.|++++++ .|. ...+.++|.++..+|++++|+..|++++++.|+.........+...++.+....+++++|
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-- 246 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA-- 246 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH--
Confidence 99999987 222 456778899999999999999999999999887643333344555555555556666665
Q ss_pred HHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHH
Q 005106 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERL 641 (714)
Q Consensus 574 ~~~l~~~~~~~~d~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~ 641 (714)
+..+++++++.|.. +.+++++|.++..+|++++|+..+++|+++.+.. +.++
T Consensus 247 ----------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 310 (406)
T 3sf4_A 247 ----------------SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310 (406)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 78899999998887 8899999999999999999999999999997766 6799
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------H-HHHHHHHHhhccC
Q 005106 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSF------E-AFFLKAYALADSS 685 (714)
Q Consensus 642 ~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~------~-a~~~~~~~~~~~~ 685 (714)
.++|.++..+|++++|+..|++|+++.+.. . +++..|.++...+
T Consensus 311 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 999999999999999999999999984332 2 7777777664443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=214.93 Aligned_cols=271 Identities=12% Similarity=-0.023 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch------hhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGW 450 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------~p~~~~ 450 (714)
...++..|..+...|++++|+..|++|++.++. .++..+|.++...|++++|+..+++++.+ .+..+.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 356678899999999999999999999998543 46778999999999999999999999887 344456
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhcCCCChH------HHHHHHHHHHhcCC--------------------HHHHHH
Q 005106 451 MYQERSL----YCEGDKRWEDLDKATALDPTLSY------PYMYRASSLMTKQN--------------------VEAALA 500 (714)
Q Consensus 451 ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~------ay~~rg~~l~~l~r--------------------~~eAl~ 500 (714)
++..+|. .+++++|+..|++|+++.|.... ++.++|.++..+|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6666654 25669999999999999887644 99999999999999 999999
Q ss_pred HHHHHHhcC------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 005106 501 EINRILGFK------LA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573 (714)
Q Consensus 501 ~~~kAL~l~------P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~ 573 (714)
.+++++.+. |. ...+.++|.++..+|++++|+..|++++++.|..........+....+.+....+++++|
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-- 242 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA-- 242 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH--
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH--
Confidence 999999872 22 345677899999999999999999999999876533233334555555555555666666
Q ss_pred HHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHH
Q 005106 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERL 641 (714)
Q Consensus 574 ~~~l~~~~~~~~d~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~ 641 (714)
+..+++++++.|.. +.+++++|.++..+|++++|+..+++|+++.|.. ..++
T Consensus 243 ----------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 243 ----------------SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 77899999988877 7899999999999999999999999999998776 4499
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 642 ~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
.++|.++..+|++++|+..|++|+++.++.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998764
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-24 Score=228.50 Aligned_cols=142 Identities=21% Similarity=0.307 Sum_probs=126.9
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|.|+|++|+|||.|||++||||++||.++|.|+...+|+|++ +++++|+.+|+|+|||+++ ++.++
T Consensus 168 l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~~L~~iYt~~~~-~~~~~ 244 (312)
T 3hqi_A 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYTGKAP-NLDKM 244 (312)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECS--SCHHHHHHHHHHHHHSCCT-THHHH
T ss_pred HHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecC--CCHHHHHHHHHhhcCCCCC-ChHHH
Confidence 34678899999999999999999999999999999999999999999999994 9999999999999999999 88999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccCCCC
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN 320 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~~L~ 320 (714)
+.+||.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++..|.+.|++++..|+...+.
T Consensus 245 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~-~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~ 309 (312)
T 3hqi_A 245 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLE 309 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999985 799999999999999999999999999999876554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=210.16 Aligned_cols=245 Identities=12% Similarity=0.011 Sum_probs=194.9
Q ss_pred HHHHHHhccchHHHHHHHHHHHhc------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----c
Q 005106 389 LGCVRLLRKEYDEAEHLFEAAVNA------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----Y 458 (714)
Q Consensus 389 lG~~~~~~g~y~eA~~~f~~AL~~------~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~ 458 (714)
++......|++++|+..|+++++. +...++..+|.++...|++++|+..|.++++.+|+.+.+|..+|. .
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 344455678999999999999986 235578889999999999999999999999999998888888875 3
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
+++++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+.........+....|++++|+..|+++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999999999997433333334456779999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC----hhHHHHHHHHH
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK----GVLYFRQSLLL 614 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~----~~~~~~~g~~L 614 (714)
+...|++........ +..... +..+|+..+.++++.+|.. +.+++++|.++
T Consensus 171 ~~~~~~~~~~~~~~~-------~~~~~~------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 171 FEKSDKEQWGWNIVE-------FYLGNI------------------SEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp HHHSCCCSTHHHHHH-------HHTTSS------------------CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHH-------HHHHhc------------------CHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 999998743221111 011111 1122477788887777743 78999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
.++|++++|+..+++|++++|++... .|.++..+|++++|+..|
T Consensus 226 ~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999987654 488999999999999887
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.4e-25 Score=206.30 Aligned_cols=126 Identities=22% Similarity=0.322 Sum_probs=96.3
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+.+++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+.+..|+++ ++++++|+.+++|+|||+++ ++.++
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Y~~~~~-~~~~~ 95 (145)
T 4eoz_A 19 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKM 95 (145)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEEC--SSCHHHHHHHHHHHHHSCCT-TGGGT
T ss_pred HHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEec--CCCHHHHHHHHHhhccCccC-CcHHH
Confidence 4567889999999999999999999999999999999999999999999999 49999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhhHHHHHHHhhhcCChhHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLA 304 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n~l~l~~~A~~~~~~~L~ 304 (714)
+.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..|++..|.
T Consensus 96 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~l~~A~~~~~~~Lk 144 (145)
T 4eoz_A 96 ADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLK 144 (145)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHhc
Confidence 99999999999999999999999999985 89999999999999998875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=227.01 Aligned_cols=213 Identities=13% Similarity=-0.022 Sum_probs=188.7
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCCh-hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 428 KGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEG-DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEI 502 (714)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~-~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~ 502 (714)
.+..++|+..+.+.....|+.+.+|+.+|. .+++ ++|+..|++|++++|+++.+|+++|.+|..+|++++|+..|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344566777777777778888888888875 3677 99999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh--------
Q 005106 503 NRILGFKLALECLELRFCFFLAL---------EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-------- 565 (714)
Q Consensus 503 ~kAL~l~P~~~~~~~R~~~~~~l---------gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~-------- 565 (714)
++|++++|++..+.++|.++..+ |++++|+..|+++++++|++.. +...++.+....
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR------SWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHHhhcccc
Confidence 99999999988888999999999 9999999999999999999843 444444444444
Q ss_pred hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005106 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (714)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P---~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~ 642 (714)
+++++| +..|+++++++| .++.+|+++|.++..+|++++|+..|++|++++|++.+++.
T Consensus 235 g~~~~A------------------~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 296 (474)
T 4abn_A 235 KISQQA------------------LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQ 296 (474)
T ss_dssp HHHHHH------------------HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chHHHH------------------HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555555 889999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 005106 643 YEGWILYDTSHCEEGLRKAEES 664 (714)
Q Consensus 643 ~~G~~ly~~G~~eeAl~~ye~A 664 (714)
++|.++..+|++++|+..|++.
T Consensus 297 ~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 297 REQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999888665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-21 Score=197.76 Aligned_cols=233 Identities=13% Similarity=0.054 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~----~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~ 457 (714)
...+++.+|..+...|++++|+.+|++|++.++..++..+|.++.. .|++++|+..|.++++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 3567889999999999999999999999999889999999999998 888888777776665543
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHH
Q 005106 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQ 529 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~e 529 (714)
++.+++++|.++.. .+++++|+..|++|++.+ ++.++.++|.+|.. .|+++
T Consensus 73 --------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 73 --------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp --------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred --------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHH
Confidence 44455555555555 555555555555555543 34555555555555 55555
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh----hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 530 ~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
+|+..|++++++++.. +...++.+... ..++++| +..++++++. +++.
T Consensus 132 ~A~~~~~~a~~~~~~~--------a~~~lg~~~~~~~~~~~~~~~A------------------~~~~~~a~~~--~~~~ 183 (273)
T 1ouv_A 132 KAVEYFTKACDLNDGD--------GCTILGSLYDAGRGTPKDLKKA------------------LASYDKACDL--KDSP 183 (273)
T ss_dssp HHHHHHHHHHHTTCHH--------HHHHHHHHHHHTSSSCCCHHHH------------------HHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHhcCcHH--------HHHHHHHHHHcCCCCCCCHHHH------------------HHHHHHHHHC--CCHH
Confidence 5555555555554221 11112211111 2222222 4555555555 3467
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 005106 606 LYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLK 677 (714)
Q Consensus 606 ~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~a~~~~ 677 (714)
+++++|.++.. .+++++|+..+++|++..| +++++++|.++.. .|++++|+..|++|+++.|+...+.+.
T Consensus 184 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 184 GCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78899999999 9999999999999999976 8999999999999 999999999999999999998866655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-22 Score=196.56 Aligned_cols=206 Identities=16% Similarity=0.108 Sum_probs=154.6
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (714)
.|..+...|++ ++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|+ ...+..+|.++..+|
T Consensus 29 ~a~~~~~~~~~---~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 29 QMGRGSEFGDY---EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence 34444444444 67777777777777777778888888888888888888888888887775 666777777777888
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 005106 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~ 606 (714)
++++|+..|+++++++|++.. +....+.+....+++++| +..++++++.+|.++.+
T Consensus 106 ~~~~A~~~~~~~~~~~~~~~~------~~~~~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~ 161 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMENGD------LFYMLGTVLVKLEQPKLA------------------LPYLQRAVELNENDTEA 161 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCSHH------HHHHHHHHHHHTSCHHHH------------------HHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhccHHHH------------------HHHHHHHHHhCCccHHH
Confidence 888888888888888877632 333334344444444444 66778888888888888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYA 680 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~ 680 (714)
++++|.++..+|++++|+..++++++.+|+++.++.++|.+++.+|++++|+..|++++++.|++. +++..+..
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988 77776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=239.97 Aligned_cols=175 Identities=11% Similarity=-0.020 Sum_probs=153.5
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 005106 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (714)
Q Consensus 474 LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~ 552 (714)
-.|+++.+|+++|.+|.++|++++|+..|++||+++|+ +.+++++|.+|..+|++++|+..|++|++++|++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~------ 77 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA------ 77 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------
Confidence 46888889999999999999999999999999999996 78888889999999999999999999999999883
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005106 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (714)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (714)
.++..++.+....+++++| +..|++||+++|+++++|+++|.++..+|++++|+..|++|++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A------------------~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGA------------------LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555556666666666666 7788999999999999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 633 l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++|++++++.++|.++..+|++++|.+.|++++++.|+..
T Consensus 140 l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 9999999999999999999999999999999999987653
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-23 Score=185.37 Aligned_cols=103 Identities=19% Similarity=0.379 Sum_probs=92.2
Q ss_pred cCCCCCccEEEEEcC----eEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCC
Q 005106 176 SGDQVLRNVVFRIHE----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT 251 (714)
Q Consensus 176 ~~~~~~~DV~l~v~~----~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~ 251 (714)
.+++.+|||+|+|+| ++|+|||.||+++|+||++||.++|.|+. ..|.|+ ++++++|+.+|+|+|||++. ++
T Consensus 3 ~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~--~~~~~~f~~~l~~iYt~~~~-~~ 78 (109)
T 2vkp_A 3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIP--DVEPAAFLILLKYMYSDEID-LE 78 (109)
T ss_dssp TTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEET--TSCHHHHHHHHHHHHHCCCC-CC
T ss_pred ccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeC--CCCHHHHHHHHHHHcCCCcc-CC
Confidence 468889999999988 89999999999999999999999999998 999999 49999999999999999999 99
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHHHHHHhhc
Q 005106 252 PNLLLEILIFANKFCCERLKDACDRKLASLV 282 (714)
Q Consensus 252 ~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l 282 (714)
.+++.+++.+|++|+++.|++.|+++|.+.+
T Consensus 79 ~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 79 ADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-22 Score=189.95 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
...|+++|.++..+|+|++|+..|++||+++ +..++.++|.++..+|++++|+..+.+++...|+.+.++...|.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 4568899999999999999999999999995 45678899999999999999999999999999999999988875
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
.++.++|+..+.+|++++|++..++..+|.++..+|++++|+..|+++++++|+ +.++.++|.+|..+|++++|+..|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 356799999999999999999999999999999999999999999999999996 899999999999999999999999
Q ss_pred HHHHhhCCCch
Q 005106 536 QAILTLSPDYR 546 (714)
Q Consensus 536 ~~al~L~P~~~ 546 (714)
++|++++|+++
T Consensus 165 ~~al~~~p~~a 175 (184)
T 3vtx_A 165 KKALEKEEKKA 175 (184)
T ss_dssp HHHHHTTHHHH
T ss_pred HHHHhCCccCH
Confidence 99999999974
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-21 Score=200.67 Aligned_cols=244 Identities=11% Similarity=-0.016 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHh----
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPLGWMYQERSL---- 457 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~--~p~~~~ay~~rg~---- 457 (714)
.+...++.++...|++++|+..++.. ......++..++..+...|++++|++.+++++.. +|+++.++..+|.
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 34566788999999999999988662 2233446667888999999999999999999976 6998888888875
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHHHHH--HHHHhcCCHHHHHHH
Q 005106 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRF--CFFLALEDYQAALCD 534 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-~~~~~R~--~~~~~lgd~e~Al~d 534 (714)
.++.++|+..|++ |++..++..+|.++..+|++++|+..|+++++++|+. ......+ .++...|++++|+..
T Consensus 114 ~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp TTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3677999999998 9999999999999999999999999999999999973 2222234 344566999999999
Q ss_pred HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHH
Q 005106 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 614 (714)
Q Consensus 535 ~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L 614 (714)
|+++++.+|++. .+...++.+....+++++| ...++++|+++|+++++++++|.++
T Consensus 189 ~~~~l~~~p~~~------~~~~~la~~~~~~g~~~eA------------------~~~l~~al~~~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 189 FQEMADKCSPTL------LLLNGQAACHMAQGRWEAA------------------EGVLQEALDKDSGHPETLINLVVLS 244 (291)
T ss_dssp HHHHHHHSCCCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999983 4566666666777788887 7899999999999999999999999
Q ss_pred HHcCChHH-HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 615 LRLNCPEA-AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 615 ~~lg~~ee-Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
..+|+.++ |.+.++++++++|+++.+.. ..-+.+.||++...|
T Consensus 245 ~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 245 QHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 99999976 56888999999999999876 466778888888877
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=217.98 Aligned_cols=197 Identities=11% Similarity=0.073 Sum_probs=181.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV-EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~-~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
++++..++++...+|+.+.+|+++|.++..+|++ ++|+..|++|++++|+ +.++.++|.+|..+|++++|+..|++++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999 9999999999999996 8999999999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhh---------hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHH
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHI---------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~---------~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~ 610 (714)
+++|+. . +...++.+.... +++++| +..++++++++|.++.+|+++
T Consensus 165 ~~~p~~-~------~~~~lg~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 165 THCKNK-V------SLQNLSMVLRQLQTDSGDEHSRHVMDS------------------VRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp TTCCCH-H------HHHHHHHHHTTCCCSCHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHH
T ss_pred hhCCCH-H------HHHHHHHHHHHhccCChhhhhhhHHHH------------------HHHHHHHHHhCCCCHHHHHHH
Confidence 999993 2 344444444444 555555 889999999999999999999
Q ss_pred HHHHHHc--------CChHHHHHHHHHHHHhCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 611 SLLLLRL--------NCPEAAMRSLQLARQHAA---SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 611 g~~L~~l--------g~~eeAl~~~~~Al~l~P---~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
|.++..+ |++++|+..|++|++++| +++++++++|.+++.+|++++|+..|++|++++|++. +++..|
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999 999999999999999999 9999999999999999999999999999999999998 899888
Q ss_pred HHhhc
Q 005106 679 YALAD 683 (714)
Q Consensus 679 ~~~~~ 683 (714)
.++..
T Consensus 300 ~~~~~ 304 (474)
T 4abn_A 300 QLLEF 304 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-21 Score=200.34 Aligned_cols=231 Identities=10% Similarity=-0.041 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHh-cCC
Q 005106 400 DEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATA-LDP 476 (714)
Q Consensus 400 ~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~-LdP 476 (714)
++|+..|++||+.+ +..+|..+|.++...|+. +... |.....++.+ ++|+..|++|++ ++|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~----------l~~~---g~~~~~~~~~---~~A~~~~~rAl~~~~p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL----------LAEK---GDMNNAKLFS---DEAANIYERAISTLLK 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HHHT---SCCHHHHHHH---HHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh----------hhhc---cchhhcccch---HHHHHHHHHHHHHhCc
Confidence 67778888887773 444566666666543221 0000 0000111222 899999999999 799
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE-CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~-~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
++..+|.++|.++..+|++++|+..|+++|+++|+ +. .|.+.+.++...|++++|+..|++|++++|.....+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~----- 171 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY----- 171 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH-----
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH-----
Confidence 99999999999999999999999999999999996 65 788899999999999999999999999999874321
Q ss_pred HHHHHHHHH-hhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 555 SQLHMLVRE-HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 555 ~~~~~~l~~-~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
...+.+.. ..+++++ |..+|+++|+.+|.++.+|.+.|..+.++|++++|+..|++|++.
T Consensus 172 -~~~a~~~~~~~~~~~~------------------A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 172 -VTAALMEYYCSKDKSV------------------AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp -HHHHHHHHHTSCCHHH------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHcCCHHH------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11111111 1233333 478999999999999999999999999999999999999999996
Q ss_pred ---CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 634 ---AAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 634 ---~P~-~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
.|+ +...+...+..+...|++++|...+++++++.|+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 564 7778888999999999999999999999999997
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=196.23 Aligned_cols=222 Identities=14% Similarity=0.030 Sum_probs=190.3
Q ss_pred HHHHhCCHHHHHHHHHHHHhcC----CCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 005106 424 LGYIKGHKLWAYEKLNSVISSV----TPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV 495 (714)
Q Consensus 424 ~~~~~G~~~~A~~~~~~aI~~~----p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~ 495 (714)
.....|++++|+..|+++++.. |..+.+|..+|. .+++++|+..|++|++++|+++.+|.++|.++..+|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3445689999999999999973 456777777764 36679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 005106 496 EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (714)
Q Consensus 496 ~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~ 574 (714)
++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++++++|++..... ... +....+++++|
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------~~~-~~~~~~~~~~A--- 163 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL------WLY-LAEQKLDEKQA--- 163 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------HHH-HHHHHHCHHHH---
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH------HHH-HHHHhcCHHHH---
Confidence 9999999999999996 888999999999999999999999999999999853221 111 11222444444
Q ss_pred HhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHh
Q 005106 575 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYD 650 (714)
Q Consensus 575 ~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~----~ea~~~~G~~ly~ 650 (714)
+..+++++...|.+...+. .+.++...+..++|+..++++++.+|.. ++++.++|.+++.
T Consensus 164 ---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 227 (275)
T 1xnf_A 164 ---------------KEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 227 (275)
T ss_dssp ---------------HHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH
Confidence 7889999999999988765 7777788888999999999999998854 8999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCH
Q 005106 651 TSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 651 ~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+|++++|+..|+++++++|+.
T Consensus 228 ~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 228 LGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp TTCHHHHHHHHHHHHTTCCTT
T ss_pred cCCHHHHHHHHHHHHhCCchh
Confidence 999999999999999999954
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=192.22 Aligned_cols=218 Identities=16% Similarity=0.069 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~ 459 (714)
...+++.+|..+...|++++|+..|+++++.++ ..++..+|.++...|++++|+..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~--------------------- 80 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFY--------------------- 80 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHH---------------------
Confidence 356678888888888888888888888888744 445666777777777766665554
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
+++++++|++..+|..+|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|+++
T Consensus 81 ---------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 81 ---------DKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp ---------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ---------HHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5555556666666666777777777777777777777777664 566666667777777777777777777
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (714)
++++|++.. +....+.+....+++++| +..++++++.+|.++.+++++|.++..+|
T Consensus 152 ~~~~~~~~~------~~~~l~~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 152 VELNENDTE------ARFQFGMCLANEGMLDEA------------------LSQFAAVTEQDPGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp HHHCTTCHH------HHHHHHHHHHHHTCCHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhCCccHH------HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHcc
Confidence 777776532 223333333333333333 56677777777777888999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~ 653 (714)
++++|+..++++++++|++..++..++.+....|+
T Consensus 208 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 208 NREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999888766654
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=186.58 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=92.3
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+.+++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+....|+++ ++++++|+.+++|+|||++. ++.++
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~ll~~~Yt~~~~-~~~~~ 95 (120)
T 2if5_A 19 QRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEID--FVSAEALTALMDFAYTATLT-VSTAN 95 (120)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECC--SSCHHHHHHHHHHHHHSCCC-CCGGG
T ss_pred HHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHH
Confidence 4567889999999999999999999999999999999999999999999999 49999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKL 278 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L 278 (714)
+.+++.+|++|+++.|++.|+++|
T Consensus 96 ~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 96 VGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999999999999999997
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=207.34 Aligned_cols=294 Identities=11% Similarity=0.032 Sum_probs=225.0
Q ss_pred CchhHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--------chhhHhhHHHHHHHhCCH
Q 005106 361 RSDKTVCFLERLLESAETD-RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--------HIYSIAGLARLGYIKGHK 431 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~-lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--------~~~a~~~lg~~~~~~G~~ 431 (714)
+.+....+++++....+.. .....+++.+|.++...|++++|+..|++|+++. ...++..+|.++...|++
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 103 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF 103 (406)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCH
Confidence 5667778888877654433 2335678999999999999999999999998771 244678899999999999
Q ss_pred HHHHHHHHHHHhcCCC-------------cHHHHHHHHhcCC-----------------hhHHHHHHHHHHhc------C
Q 005106 432 LWAYEKLNSVISSVTP-------------LGWMYQERSLYCE-----------------GDKRWEDLDKATAL------D 475 (714)
Q Consensus 432 ~~A~~~~~~aI~~~p~-------------~~~ay~~rg~~~~-----------------~~eAl~d~~kAi~L------d 475 (714)
++|+..+.+++++.+. .|..|..+|.+.. +++|+..|++|+++ .
T Consensus 104 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 183 (406)
T 3sf4_A 104 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR 183 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999997553 3444455555000 49999999999998 6
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L------ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~------~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~ 548 (714)
|..+.+|.++|.++..+|++++|+..|++++++.|. . ..+.++|.++..+|++++|+..|++++++.|+....
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 667789999999999999999999999999998653 2 267789999999999999999999999998876433
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEA 622 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~ee 622 (714)
.....+....+.+....+++++| +..+++++++.|.. +.++.++|.++..+|++++
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKA------------------IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHH------------------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 33444555566666666666666 77889999887665 6789999999999999999
Q ss_pred HHHHHHHHHHhC------CCChhHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCHH
Q 005106 623 AMRSLQLARQHA------ASDHERLVYEGWILYDTSHCEE-GLRKAEESIQMKRSFE 672 (714)
Q Consensus 623 Al~~~~~Al~l~------P~~~ea~~~~G~~ly~~G~~ee-Al~~ye~Ai~i~~~~~ 672 (714)
|+..+++|+++. |....++..+|.++..+|+..+ +....++...++.+.+
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 382 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----------------
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999994 4457899999999999998854 3333444444444433
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-22 Score=185.81 Aligned_cols=102 Identities=22% Similarity=0.403 Sum_probs=97.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEe-CCCCCCHHHHHHHHHhhccCCCCCCCHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDL-SENNISPSGLRIISDFSVTGSLNGVTPN 253 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l-~~~~i~~~~~~~lL~f~Ytg~l~~i~~~ 253 (714)
+..++.+|||+|+|+|++|+|||.||+++|+||++||.+++.| .+..|+| + ++++++|+.+|+|+|||++. ++.+
T Consensus 23 l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~--~~~~~~f~~ll~~~Ytg~~~-~~~~ 98 (127)
T 1r29_A 23 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDP--EINPEGFNILLDFMYTSRLN-LREG 98 (127)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCT--TSCHHHHHHHHHHHHHSCCC-CCTT
T ss_pred HHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCC--CCCHHHHHHHHHHHcCCCcC-cCHH
Confidence 4568889999999999999999999999999999999999999 7789999 6 59999999999999999999 9999
Q ss_pred HHHHHHHHHhhhChhhHHHHHHHHHHh
Q 005106 254 LLLEILIFANKFCCERLKDACDRKLAS 280 (714)
Q Consensus 254 ~v~~lL~aAd~~~v~~L~~~C~~~L~~ 280 (714)
++.+++.+|++|+++.|++.|+++|.+
T Consensus 99 ~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 99 NIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999975
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=188.09 Aligned_cols=168 Identities=10% Similarity=0.083 Sum_probs=113.0
Q ss_pred ChhHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP-~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
++++|+..|++|++++| .+..+++++|.++..+|++++|+..|+++++++|+ +..+..+|.++..+|++++|+..|++
T Consensus 22 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 101 (228)
T 4i17_A 22 NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTE 101 (228)
T ss_dssp CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33555555555555555 55555555555555555566666556665555554 45555555555555555555555555
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
+++++|++..+. .. .+.+|+++|.++..+
T Consensus 102 al~~~p~~~~~~------~~---------------------------------------------~~~~~~~~g~~~~~~ 130 (228)
T 4i17_A 102 GIKAVPGNATIE------KL---------------------------------------------YAIYYLKEGQKFQQA 130 (228)
T ss_dssp HHHHSTTCHHHH------HH---------------------------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHCCCcHHHH------HH---------------------------------------------HHHHHHHHhHHHHHh
Confidence 555555552100 00 014678888888888
Q ss_pred CChHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhcCCH---------------------------HHHHHHHHHHHhcC
Q 005106 618 NCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHC---------------------------EEGLRKAEESIQMK 668 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~--~~ea~~~~G~~ly~~G~~---------------------------eeAl~~ye~Ai~i~ 668 (714)
|++++|+..|++|++++|+ ++++++++|.+++.+|+. ++|+..|++|++++
T Consensus 131 ~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 131 GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888888888888888888 888888888888888888 99999999999999
Q ss_pred CCHH-HHHHHH
Q 005106 669 RSFE-AFFLKA 678 (714)
Q Consensus 669 ~~~~-a~~~~~ 678 (714)
|+.. +..+.+
T Consensus 211 p~~~~~~~~l~ 221 (228)
T 4i17_A 211 PNRTEIKQMQD 221 (228)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 9987 544443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-20 Score=184.88 Aligned_cols=188 Identities=14% Similarity=0.029 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..++.++..+|++++|+..|+++++
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 54 EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44444555555555555556666666666666666666666666666553 45555555556666666666666666665
Q ss_pred --hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005106 541 --LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 541 --L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (714)
.+|++. .+...++.+....+++++| +..++++++.+|.++.+++.+|.++..+|
T Consensus 134 ~~~~~~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 134 DTLYPERS------RVFENLGLVSLQMKKPAQA------------------KEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp CTTCTTHH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred CccCcccH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 444431 1222223233333333333 45566666666666778889999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a 673 (714)
++++|+..++++++.+|++.+++..+|.++..+|++++|...+++++++.|+...
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999999999999999999999999999999998773
|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-22 Score=190.01 Aligned_cols=108 Identities=17% Similarity=0.245 Sum_probs=99.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.|+ ..|.+++ ++++++|+.+|+|+|||++. ++.++
T Consensus 30 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~-~v~~~~~~~lL~~~Ytg~~~-i~~~~ 105 (138)
T 2z8h_A 30 QRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPE-EVTVKGFEPLIQFAYTAKLI-LSKDN 105 (138)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCT-TSCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCC-CCCHHHHHHHHHHhcCCCcc-cCHHH
Confidence 45678899999999999999999999999999999999999774 5788853 69999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcCCHhh
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVASRED 287 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~~~~n 287 (714)
+.+|+.+|++|+++.|++.|++||.+.++ .+|
T Consensus 106 v~~ll~~A~~~~i~~L~~~C~~~l~~~l~-~sn 137 (138)
T 2z8h_A 106 VDEVCRCVEFLSVHNIEESCFQFLKFKFL-DST 137 (138)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHTTCCCS-CCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcc-ccc
Confidence 99999999999999999999999999885 344
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-18 Score=195.56 Aligned_cols=318 Identities=10% Similarity=-0.084 Sum_probs=219.3
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLL----RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLW 433 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~----~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~----~G~~~~ 433 (714)
.+....+++++.+. ....+.+.+|..+.. .+++++|+.+|++|++.++..++..+|.+|.. .+++++
T Consensus 59 ~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34555566554432 235677778888887 78888888888888888777788888888877 778888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHh--------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHH
Q 005106 434 AYEKLNSVISSVTPLGWMYQERSL--------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAE 501 (714)
Q Consensus 434 A~~~~~~aI~~~p~~~~ay~~rg~--------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~ 501 (714)
|+.+|+++++.. .+.++.++|. -.+.++|+..|++|++. +++.+++++|.+|.. .+++++|+..
T Consensus 134 A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 134 SVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 888888877653 4555555543 23457888888888775 577888888888887 7888888888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh----hhhhhHHH-
Q 005106 502 INRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIAD- 572 (714)
Q Consensus 502 ~~kAL~l~P~~~~~~~R~~~~~~----lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~----~~~~~~A~- 572 (714)
|+++++.. ++.+.+.+|.+|.. .+|+++|+..|+++++..+... ...++.+... ..++++|.
T Consensus 210 ~~~a~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a--------~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 210 YRKSATSG-DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIA--------QFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHH--------HHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHCCCCCCCCHHHHHH
Confidence 88887643 46666777777775 7788888888888877644321 1111111111 12222221
Q ss_pred ------------HHHhhhhccccc-----cccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcC---ChHHHHHHHHHHH
Q 005106 573 ------------CWLQLYDRWSSV-----DDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLAR 631 (714)
Q Consensus 573 ------------~~~~l~~~~~~~-----~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg---~~eeAl~~~~~Al 631 (714)
++..+....... .+.. |+..++++++. +++.+++++|.++...| ++++|+..|++|+
T Consensus 281 ~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 281 WYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 222222222111 3444 78899998876 67789999999999877 7889999999999
Q ss_pred HhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhh
Q 005106 632 QHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 632 ~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (714)
+. +++++++++|++++. .+++++|+..|++|++.. +..++++.|..+....--+..-..-+..++.|+
T Consensus 359 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 359 AK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 87 689999999999999 899999999999999875 456889999988764212333344455555554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-21 Score=205.72 Aligned_cols=266 Identities=12% Similarity=-0.049 Sum_probs=220.0
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcH----HHHHHHHh----cCChhHHHHHHHHHHhc------CCCChHH
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLG----WMYQERSL----YCEGDKRWEDLDKATAL------DPTLSYP 481 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~----~ay~~rg~----~~~~~eAl~d~~kAi~L------dP~~~~a 481 (714)
..+..+|..+...|++++|+..|+++++..|+.. .+|..+|. .+++++|+..|++|+++ +|..+.+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3456789999999999999999999999999864 56767664 26669999999999999 7999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGF------KLA-LECLELRFCFFLALED-----------------YQAALCDVQA 537 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l------~P~-~~~~~~R~~~~~~lgd-----------------~e~Al~d~~~ 537 (714)
|.++|.++..+|++++|+..|++++++ .|. ..++.++|.++..+|+ +++|+..|++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999998 443 5567889999999999 9999999999
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh------HHHHHH
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV------LYFRQS 611 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~------~~~~~g 611 (714)
++++.+....-.....+...++.+....+++++| +..+++++++.|.... +++++|
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA------------------IEHHQERLRIAREFGDRAAERRANSNLG 270 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHH------------------HHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9988654322222334555555555555555555 7889999999887766 999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHHHH
Q 005106 612 LLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-------EAFFLKA 678 (714)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~-------~a~~~~~ 678 (714)
.++..+|++++|+..+++|+++.|.. +.++.++|.++..+|++++|+..|++++.+.+.. .+++..|
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 350 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLG 350 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999999999999999999966 7899999999999999999999999999986543 2788888
Q ss_pred HHhhccCCCCCchhhHHHHHHHhhc
Q 005106 679 YALADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
.++.... .-..-+..+++|++
T Consensus 351 ~~~~~~g----~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 351 NAHSAIG----GHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHTT----CHHHHHHHHHHHHH
T ss_pred HHHHHhc----cHHHHHHHHHHHHH
Confidence 8877653 23455666666664
|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-22 Score=189.00 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=91.9
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCc--CCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFME--SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~E--s~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~ 252 (714)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.| +...+|.|+ ++++++|+.+|+|+|||++. ++.
T Consensus 41 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~--~v~~~~f~~lL~fiYtg~~~-i~~ 117 (144)
T 2ppi_A 41 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNE 117 (144)
T ss_dssp TTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECC--SSCHHHHHHHHHHHTTSCCC-CCT
T ss_pred HHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeC--CCCHHHHHHHHHHHhCCCCC-CCH
Confidence 5678999999999999999999999999999999999999876 667889998 49999999999999999999 999
Q ss_pred HHHHHHHHHHhhhChhhHHHHHHHHHH
Q 005106 253 NLLLEILIFANKFCCERLKDACDRKLA 279 (714)
Q Consensus 253 ~~v~~lL~aAd~~~v~~L~~~C~~~L~ 279 (714)
+++.+|+.+|++|+++.|++.|++||.
T Consensus 118 ~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 118 DTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 999999999999999999999998863
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-18 Score=192.24 Aligned_cols=288 Identities=10% Similarity=-0.048 Sum_probs=192.8
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHHH
Q 005106 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLL----RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWA 434 (714)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~----~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~----~G~~~~A 434 (714)
+....+++++.+. ....+.+++|..+.. .+++++|+.+|++|++.++..++.++|.+|.. .+++++|
T Consensus 96 ~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 96 AQAVIWYKKAALK-----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3445555553332 124556667777766 66777777777777777777777777777766 6677777
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHh--------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHH
Q 005106 435 YEKLNSVISSVTPLGWMYQERSL--------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEI 502 (714)
Q Consensus 435 ~~~~~~aI~~~p~~~~ay~~rg~--------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~~ 502 (714)
+.+|.++++. +++.++.++|. ..+.++|+..|++|++. .++.+++++|.+|.. .+++++|+..|
T Consensus 171 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 171 REWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 7777777765 34455555443 23446777777777664 456677777777775 67777777777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh-----hhhhHHHH
Q 005106 503 NRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-----DNWTIADC 573 (714)
Q Consensus 503 ~kAL~l~P~~~~~~~R~~~~~~----lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~-----~~~~~A~~ 573 (714)
+++++.. ++.+++.+|.+|.. .+|+++|+..|+++++.++.. +...++.+.... +++++|.-
T Consensus 247 ~~a~~~~-~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~--------a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 247 SQSAEQG-NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSD--------GQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHTTT-CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHH--------HHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 7777542 35556666766666 677777777777776653222 111122221111 22222222
Q ss_pred -------------HHhhhhcccc---ccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 005106 574 -------------WLQLYDRWSS---VDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQ 632 (714)
Q Consensus 574 -------------~~~l~~~~~~---~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al~ 632 (714)
+..++..... ..+.. |+..++++++. +++.+++++|.++.. .+++++|+..|++|++
T Consensus 318 ~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 318 WYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 2222222111 11333 78899999987 789999999999999 9999999999999998
Q ss_pred hCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHH
Q 005106 633 HAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 633 l~P~~~ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.. ++++++++|++++. .|++++|+..|++|+++.|+..
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 64 79999999999999 9999999999999999998743
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-20 Score=195.17 Aligned_cols=227 Identities=7% Similarity=-0.100 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHhc----C--ChhHHHHHHHHHHhcCCCChHHHHHHHHHH----Hhc---CCHHHH
Q 005106 432 LWAYEKLNSVISSVTPLGWMYQERSLY----C--EGDKRWEDLDKATALDPTLSYPYMYRASSL----MTK---QNVEAA 498 (714)
Q Consensus 432 ~~A~~~~~~aI~~~p~~~~ay~~rg~~----~--~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l----~~l---~r~~eA 498 (714)
++|++.++++|.++|++..+|+.||.. + .+++++..+++++.++|.+..+|++|+.++ ..+ ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 467777777777777777777777642 3 668888888888888888888898888888 666 788899
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh------hh
Q 005106 499 LAEINRILGFKL-ALECLELRFCFFLALEDYQ--AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN------WT 569 (714)
Q Consensus 499 l~~~~kAL~l~P-~~~~~~~R~~~~~~lgd~e--~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~------~~ 569 (714)
+..++++|+.+| ++.+|+.|++++..+|+++ +++..+++++++||.|.. |.+.++.+...... ++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s------AW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS------AWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhccccchhhhHH
Confidence 999999999988 4888888998888888888 889999999999998732 33333333333222 22
Q ss_pred HHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHH-HHHHHHHHHHhC---CCChhHHHHHH
Q 005106 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA-AMRSLQLARQHA---ASDHERLVYEG 645 (714)
Q Consensus 570 ~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee-Al~~~~~Al~l~---P~~~ea~~~~G 645 (714)
+ ++..++++|..+|++..+|++++.++.++|+..+ ....+.+++.++ |.+..|+..++
T Consensus 204 e------------------El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 204 E------------------ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp H------------------HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred H------------------HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 2 3889999999999999999999999999999666 445777788887 99999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-cCCCHH-HHHHHHHHhh
Q 005106 646 WILYDTSHCEEGLRKAEESIQ-MKRSFE-AFFLKAYALA 682 (714)
Q Consensus 646 ~~ly~~G~~eeAl~~ye~Ai~-i~~~~~-a~~~~~~~~~ 682 (714)
-++..+|+.++|+..|++++. ++|--. .|..|+-.|.
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l~ 304 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKLT 304 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTCC
T ss_pred HHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhcc
Confidence 999999999999999999997 899988 7777775553
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-22 Score=183.09 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=91.8
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|||++|+|||.|||++|+||++||.+++ +..|+|+ ++++++|+.+|+|+|||++. ++.++
T Consensus 18 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~--~~~~~~f~~ll~~iYtg~~~-~~~~~ 90 (119)
T 3b84_A 18 QREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLP--AGFAEIFGLLLDFFYTGHLA-LTSGN 90 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEEC--GGGHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHH
Confidence 34678899999999999999999999999999999999987 5789999 59999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHh
Q 005106 255 LLEILIFANKFCCERLKDACDRKLAS 280 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~ 280 (714)
+.+++.+|++|+++.|++.|++||.+
T Consensus 91 v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 91 RDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999865
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-19 Score=175.90 Aligned_cols=200 Identities=10% Similarity=-0.074 Sum_probs=128.5
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 005106 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLM 490 (714)
Q Consensus 415 ~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~ 490 (714)
..++..+|.++...|++++|+..+.++++..|+.+.+|..+|. .++.++|+..|+++++++|++..+|.++|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4455666666666666666666655555555544444444432 133344444444444444444444444444444
Q ss_pred hc-CCHHHHHHHHHHHHh--cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 005106 491 TK-QNVEAALAEINRILG--FKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (714)
Q Consensus 491 ~l-~r~~eAl~~~~kAL~--l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (714)
.. |++++|+..|+++++ .+|+ ...+..+|.++..+|++++|+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--------------------------------- 134 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA--------------------------------- 134 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH---------------------------------
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH---------------------------------
Confidence 44 444444444444444 2232 3334444444444444444444
Q ss_pred hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChhHHHHHH
Q 005106 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-SDHERLVYEG 645 (714)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P-~~~ea~~~~G 645 (714)
.++++++.+|.++.+++++|.++..+|++++|+..++++++++| ++..++...+
T Consensus 135 -------------------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 189 (225)
T 2vq2_A 135 -------------------------YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGW 189 (225)
T ss_dssp -------------------------HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred -------------------------HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45555555566666788899999999999999999999999999 9999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 646 WILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 646 ~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.++...|+.++|...+++++.+.|+..
T Consensus 190 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 190 KIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999998999877
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=198.39 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=181.8
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC--CH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALE--DY 528 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r----------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg--d~ 528 (714)
++|+..++++|.++|++..+|++|+.++..+++ +++++..++++|..+|. +.+|+.|++++..+| ++
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 688999999999999999999999999988877 68999999999999994 899999999999998 48
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh-hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH
Q 005106 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (714)
Q Consensus 529 e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~-~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~ 607 (714)
++++..++++++++|.|.. +...++-+...... +++ ++..++++|+.+|++..+|
T Consensus 127 ~~EL~~~~k~l~~dprNy~------AW~~R~~vl~~l~~~~~e------------------el~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 127 ARELELCARFLEADERNFH------CWDYRRFVAAQAAVAPAE------------------ELAFTDSLITRNFSNYSSW 182 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCCHHH------------------HHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhCcCHHH------------------HHHHHHHHHHHCCCCHHHH
Confidence 9999999999999998843 22222222222222 222 4888999999999999999
Q ss_pred HHHHHHHHHc--------------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-----------CCHHHHHHHHH
Q 005106 608 FRQSLLLLRL--------------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-----------SHCEEGLRKAE 662 (714)
Q Consensus 608 ~~~g~~L~~l--------------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~-----------G~~eeAl~~ye 662 (714)
++++.++..+ +.+++++..+.+|+.++|+|..+++|+.|++... +.+++++..++
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 9999999998 5688999999999999999999999888888877 56899999999
Q ss_pred HHHhcCCCHHHHHHHHHHhhccCCCCCchh-hHHHHHHHhhcCCCCccccC
Q 005106 663 ESIQMKRSFEAFFLKAYALADSSQDSSCSS-TVVSLLEDALKCPSDRLRKG 712 (714)
Q Consensus 663 ~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 712 (714)
+.+++.|++ .|.+++.++....+|+.... .+.+.|+...+ =|-+|||
T Consensus 263 elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 263 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred HHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 999999988 79999999887777765332 45555555543 3677776
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-20 Score=194.13 Aligned_cols=247 Identities=9% Similarity=-0.036 Sum_probs=152.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh-------ccch-------HHHHHHHHHHHh-ccch--hhHhhHHHHHHH
Q 005106 365 TVCFLERLLESAETDRQRLLAFHQLGCVRLL-------RKEY-------DEAEHLFEAAVN-AGHI--YSIAGLARLGYI 427 (714)
Q Consensus 365 ~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~-------~g~y-------~eA~~~f~~AL~-~~~~--~a~~~lg~~~~~ 427 (714)
+...+++++...+.. ..+++++|..+.. .|++ ++|+..|++||+ ++|. .+|..+|.++..
T Consensus 35 a~~~~~~al~~~p~~---~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 35 VMFAYEQCLLVLGHH---PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC---HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 335666666544332 5667777777653 3554 677777777776 4433 345556666655
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 428 KGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY-PYMYRASSLMTKQNVEAALAEINRIL 506 (714)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~-ay~~rg~~l~~l~r~~eAl~~~~kAL 506 (714)
+|+++ +|...|++|++++|+++. +|.++|.++.++|++++|+..|++|+
T Consensus 112 ~~~~~------------------------------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 112 RMKYE------------------------------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp TTCHH------------------------------HHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCCHH------------------------------HHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55554 455555666666666665 67777777777777777777777777
Q ss_pred hcCCC-HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 005106 507 GFKLA-LECLELRFCFF-LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (714)
Q Consensus 507 ~l~P~-~~~~~~R~~~~-~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 584 (714)
+++|. ...+...+.+. ..+|++++|+..|+++++++|++.. +....+.+....++.++
T Consensus 162 ~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~g~~~~-------------- 221 (308)
T 2ond_A 162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE------YVLAYIDYLSHLNEDNN-------------- 221 (308)
T ss_dssp TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHTTCCHHH--------------
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHCCCHHH--------------
Confidence 76664 44444333332 2357777777777777777776522 12222222222222222
Q ss_pred cccchHHHHHHHHHh---CC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 585 DDIGSLSVIYQMLES---DA-PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 585 ~d~~al~~~~qaL~l---~P-~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
|...|+++++. +| .+..+|.+.+..+.+.|+.++|...+++|+++.|++.+-... +.+ ..
T Consensus 222 ----A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~-~~~-----------~~ 285 (308)
T 2ond_A 222 ----TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKET-ALL-----------VD 285 (308)
T ss_dssp ----HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHH-HHH-----------HT
T ss_pred ----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchH-HHH-----------HH
Confidence 36667777774 44 367788888999999999999999999999999987754421 222 11
Q ss_pred HHHHHhcCCCHH-HHHHHHHH
Q 005106 661 AEESIQMKRSFE-AFFLKAYA 680 (714)
Q Consensus 661 ye~Ai~i~~~~~-a~~~~~~~ 680 (714)
--+.+.++|+.. +.+.-||+
T Consensus 286 r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 286 RYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp TTCBTTBCSSCHHHHHTTTCC
T ss_pred HHHhcccCCCCHHHHHhcCCC
Confidence 126777888887 66667765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.6e-21 Score=224.04 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh--
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~-- 457 (714)
...+++++|.++.++|++++|+..|++||+++ +..++.++|.++..+|++++|++.|++||+++|+++.+|.++|.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 47889999999999999999999999999995 56678999999999999999999999999999999999999986
Q ss_pred --cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 458 --YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 458 --~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
.+++++|++.|++|++++|+++.+|+++|.+|.++|++++|+..|++||+++|+ +.++.++|.++..+|++++|++.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 367799999999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred HHHHHhhCCCc
Q 005106 535 VQAILTLSPDY 545 (714)
Q Consensus 535 ~~~al~L~P~~ 545 (714)
|++++++.|+.
T Consensus 168 ~~kal~l~~~~ 178 (723)
T 4gyw_A 168 MKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhChhH
Confidence 99999998875
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-21 Score=178.47 Aligned_cols=100 Identities=21% Similarity=0.307 Sum_probs=91.7
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.||+++|+||++||.++ .+..|.|+.+++++++|+.+++|+|||++. ++.++
T Consensus 16 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~-~~~~~ 90 (116)
T 2vpk_A 16 QREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLN-LDSWN 90 (116)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcc-cCHHH
Confidence 3457889999999999999999999999999999999987 356788873349999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLA 279 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~ 279 (714)
+.+++.+|++|+++.|++.|+++|.
T Consensus 91 v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 91 VKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999985
|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-21 Score=178.95 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=93.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.++ ..+|+++ ++++++|+.+++|+|||+++ ++.++
T Consensus 22 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-~~~~~ 93 (121)
T 1buo_A 22 MRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLD--FLSPKTFQQILEYAYTATLQ-AKAED 93 (121)
T ss_dssp HHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHHHSCCC-CCGGG
T ss_pred HHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeC--CCCHHHHHHHHHhhcCCCcC-CCHHH
Confidence 4567889999999999999999999999999999999875 4689998 59999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhc
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLV 282 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l 282 (714)
+.+++.+|++|+++.|++.|+++|.+.+
T Consensus 94 ~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 94 LDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-19 Score=179.63 Aligned_cols=209 Identities=13% Similarity=-0.022 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~ 459 (714)
...+++.+|..+...|++++|+..|+++++.++ ..++..+|.++...|++++|++.+++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~------------------- 96 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK------------------- 96 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------
Confidence 367788899999999999999999999988753 44566777777777777666665554
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~--l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
+++++|++..+|.++|.++..+|++++|+..|+++++ .+|. +..+..+|.++..+|++++|+..|+
T Consensus 97 -----------a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 97 -----------ALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp -----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------HHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555666666666666666666666666666 4554 4555556666666666666666666
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
++++++|++. .+...++.+....+++++| +..++++++.+|.++.++..++.++..
T Consensus 166 ~~~~~~~~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 166 KSLRLNRNQP------SVALEMADLLYKEREYVPA------------------RQYYDLFAQGGGQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHCSCCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHhcCcccH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 6666666652 2223333333333444444 555666666667677778889999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYE 644 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (714)
+|++++|.+.+++++++.|++.++...+
T Consensus 222 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 222 FEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp TTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999876543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-19 Score=173.27 Aligned_cols=206 Identities=12% Similarity=-0.067 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh--
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~-- 457 (714)
...+++.+|.++...|++++|+..|+++++..+ ..++..+|.++...|++++|+..+.+++...|+.+.++..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 467788999999999999999999999999854 5578889999999999999999999999999999999988874
Q ss_pred --c-CChhHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHH
Q 005106 458 --Y-CEGDKRWEDLDKATA--LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAA 531 (714)
Q Consensus 458 --~-~~~~eAl~d~~kAi~--LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~A 531 (714)
. ++.++|+..|+++++ .+|+...+|.++|.++..+|++++|+..|+++++.+|+ +..+..++.++..+|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 4 677999999999999 77888999999999999999999999999999999996 88889999999999999999
Q ss_pred HHHHHHHHhhCC-CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHH
Q 005106 532 LCDVQAILTLSP-DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (714)
Q Consensus 532 l~d~~~al~L~P-~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~ 610 (714)
+..|+++++++| ++. ..+...
T Consensus 167 ~~~~~~~~~~~~~~~~----------------------------------------------------------~~~~~~ 188 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQA----------------------------------------------------------DDLLLG 188 (225)
T ss_dssp HHHHHHHHHHHCSCCH----------------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHhCCCCCH----------------------------------------------------------HHHHHH
Confidence 999999988888 652 223445
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005106 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (714)
Q Consensus 611 g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (714)
+.++...|+.++|...++.+++.+|++.++...+.
T Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 189 WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 66777888899888888888889999888776553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-20 Score=182.35 Aligned_cols=202 Identities=9% Similarity=-0.067 Sum_probs=140.5
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p-~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~ 491 (714)
++..+|.+++..|++++|+..|++++++.| +...+++++|. .+++++|+..|++|++++|+++.+|.++|.++..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 344444444444444444444444444444 44444444432 1344666777788888888888999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--chhhhhhHHHHHHHHHH
Q 005106 492 KQNVEAALAEINRILGFKLA-L-------ECLELRFCFFLALEDYQAALCDVQAILTLSPD--YRMFEGRVAASQLHMLV 561 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~-~-------~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~--~~~~~~~~~a~~~~~~l 561 (714)
+|++++|+..|+++++++|+ + ..+..+|.++..+|++++|+..|+++++++|+ +..++ ..++.+
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------~~l~~~ 162 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL------YSLGVL 162 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH------HHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH------HHHHHH
Confidence 99999999999999999995 6 45777888999999999999999999999998 64322 222211
Q ss_pred HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005106 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (714)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (714)
... .. ...++++..+.+.+...+ .+......+.+++|+..+++|++++|++.++.
T Consensus 163 ~~~-----~~------------------~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 217 (228)
T 4i17_A 163 FYN-----NG------------------ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIK 217 (228)
T ss_dssp HHH-----HH------------------HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHH-----HH------------------HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 110 01 123566666766664443 55566778889999999999999999999999
Q ss_pred HHHHHHHH
Q 005106 642 VYEGWILY 649 (714)
Q Consensus 642 ~~~G~~ly 649 (714)
..++.+..
T Consensus 218 ~~l~~i~~ 225 (228)
T 4i17_A 218 QMQDQVKA 225 (228)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 98888754
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-22 Score=184.98 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=90.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++ +.+|+|+ ++++++|+.+|+|+|||++. ++.++
T Consensus 19 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~--~~~~~~f~~lL~fiYtg~~~-i~~~~ 91 (135)
T 2yy9_A 19 QREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLP--AGFAEIFGLLLDFFYTGHLA-LTSGN 91 (135)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEEC--GGGHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeC--CCCHHHHHHHHHHHhCCCCC-CCHHH
Confidence 45788999999999999999999999999999999999987 5679998 49999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
+.+|+.+|++|+++.|++.|++||.+.+.
T Consensus 92 v~~ll~~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 92 RDQVLLAAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999987764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=221.65 Aligned_cols=198 Identities=10% Similarity=-0.059 Sum_probs=160.3
Q ss_pred hcCCCcHHHHHHHH-hcCChhHHHHHHHHHH--------hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H
Q 005106 443 SSVTPLGWMYQERS-LYCEGDKRWEDLDKAT--------ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L 512 (714)
Q Consensus 443 ~~~p~~~~ay~~rg-~~~~~~eAl~d~~kAi--------~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~ 512 (714)
..+|+++.+++..+ ..+++++|++.|++|+ +++|+++.+|.++|.++.++|++++|+..|+++++++|+ +
T Consensus 388 ~~~p~~~~a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 467 (681)
T 2pzi_A 388 LVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW 467 (681)
T ss_dssp CCCTTSTTHHHHHHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred cCCCCCcchHHhhcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence 35677777777665 2466699999999999 999999999999999999999999999999999999996 8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 005106 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (714)
Q Consensus 513 ~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 592 (714)
.+++++|.++..+|++++|+.+|++|++++|++.. +...++.+....++++ + +..
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~lg~~~~~~g~~~------------------~-~~~ 522 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA------PKLALAATAELAGNTD------------------E-HKF 522 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH------HHHHHHHHHHHHTCCC------------------T-TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHcCChH------------------H-HHH
Confidence 99999999999999999999999999999999844 2233332222222222 2 447
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESI 665 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA-l~~ye~Ai 665 (714)
|+++|+++|+++.+|+++|.++.++|++++|+..|++|++++|+++++++++|.+++..|+.+++ ...+++|+
T Consensus 523 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 523 YQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887774444 44444444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=195.21 Aligned_cols=182 Identities=10% Similarity=-0.002 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCchhhhh
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLAL-EDYQAALCDVQAILTLSPDYRMFEG 550 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~l-gd~e~Al~d~~~al~L~P~~~~~~~ 550 (714)
+.+|.++|.+|..+|++++|+..|++||++.|. ..++.++|.+|..+ |++++|+..|++|+++.|+......
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 456666666666666666666666666666542 23445566666664 6666666666666666664311111
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh-------HHHHHHHHHHHcCChHHH
Q 005106 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV-------LYFRQSLLLLRLNCPEAA 623 (714)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~-------~~~~~g~~L~~lg~~eeA 623 (714)
...+...++.+....+++++| +..++++++++|.+.. +++++|.++..+|++++|
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEA------------------SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 122333333334444444444 5666666666666544 678999999999999999
Q ss_pred HHHHHHHHHhCCCChhHH-----HHHHHHHH--hcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005106 624 MRSLQLARQHAASDHERL-----VYEGWILY--DTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (714)
Q Consensus 624 l~~~~~Al~l~P~~~ea~-----~~~G~~ly--~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~ 678 (714)
+..|+++++++|+...+. ..++..+- +.+++++|+..|++++.++|.+.-..+|.
T Consensus 219 ~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 219 ARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 999999999999987753 33444443 56889999999999999999987666554
|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-22 Score=184.74 Aligned_cols=101 Identities=19% Similarity=0.286 Sum_probs=90.5
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.|+ ..|++++ ++++++|+.+|+|+|||++. ++.++
T Consensus 23 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~-~v~~~~f~~lL~~iYtg~~~-i~~~~ 98 (124)
T 2ihc_A 23 QRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPE-EVTVKGFEPLIQFAYTAKLI-LSKEN 98 (124)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCT-TSCHHHHHHHHHHHHHSEEE-EETTT
T ss_pred HHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecC-CcCHHHHHHHHHHhcCCCcc-cCHHH
Confidence 44678899999999999999999999999999999999999775 5788853 69999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLA 279 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~ 279 (714)
+.+++.+|++|+++.|++.|++||.
T Consensus 99 v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 99 VDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999999999999999999874
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-20 Score=190.41 Aligned_cols=266 Identities=14% Similarity=-0.031 Sum_probs=215.7
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHHHHHh----cCChhHHHHHHHHHHhc------CCCChHHH
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPL----GWMYQERSL----YCEGDKRWEDLDKATAL------DPTLSYPY 482 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~----~~ay~~rg~----~~~~~eAl~d~~kAi~L------dP~~~~ay 482 (714)
.+...|..+...|++++|+..|+++++..|+. +.+|..+|. .+++++|+..|++|+++ .|..+.+|
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 45667999999999999999999999999886 466666664 35669999999999998 77788999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 005106 483 MYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALED--------------------YQAALCDV 535 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd--------------------~e~Al~d~ 535 (714)
.++|.++..+|++++|+..+++++++.|. ...+..+|.++..+|+ +++|+..|
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999998552 2366778999999999 99999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh------HHHH
Q 005106 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV------LYFR 609 (714)
Q Consensus 536 ~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~------~~~~ 609 (714)
++++++.+..........+....+.+....+++++| +..+++++++.|.... ++++
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA------------------VIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999987543322222333455555555555555555 7788889888776655 9999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHH
Q 005106 610 QSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-------EAFFL 676 (714)
Q Consensus 610 ~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~-------~a~~~ 676 (714)
+|.++..+|++++|+..+++++++.|+. +.++.++|.++..+|++++|+..+++|+++.|.. .+++.
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 308 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999999999999998887 8899999999999999999999999999986654 27778
Q ss_pred HHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 677 KAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
.|.++...+ --...+..+++|++.
T Consensus 309 la~~~~~~g----~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 309 LGNAYTALG----NHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHT----CHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC----ChHHHHHHHHHHHHH
Confidence 887776654 234556666666653
|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-22 Score=183.35 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=93.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.|||++|+||++||.+++.| ...|.+++ ++++++|+.+|+|+|||++. ++.++
T Consensus 26 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~-~~~~~~f~~~l~~iYtg~~~-~~~~~ 101 (125)
T 3ohu_A 26 QRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPE-EVTARGFGPLLQFAYTAKLL-LSREN 101 (125)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCT-TCCHHHHHHHHHHHTTSEEE-ECTTT
T ss_pred HHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCC-CCCHHHHHHHHHhHcCCceE-ECHHH
Confidence 4568899999999999999999999999999999999999977 67889984 49999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKL 278 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L 278 (714)
+.+++.+|++|+++.|++.|++||
T Consensus 102 v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 102 IREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhC
Confidence 999999999999999999998764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-20 Score=215.79 Aligned_cols=183 Identities=11% Similarity=-0.033 Sum_probs=169.4
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL--------GFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL--------~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P 543 (714)
.++|+++.+++..| ...|++++|+..|++++ +.+|+ .+.+..+|.++..+|++++|+..|+++++++|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 67999999999888 88999999999999999 99996 78899999999999999999999999999999
Q ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 005106 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (714)
Q Consensus 544 ~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA 623 (714)
++. .+...++.+....+++++| +..|+++|+++|+++.+|+++|.++.++|++++
T Consensus 465 ~~~------~a~~~lg~~~~~~g~~~~A------------------~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 465 WRW------RLVWYRAVAELLTGDYDSA------------------TKHFTEVLDTFPGELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp CCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-
T ss_pred chH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-
Confidence 993 4566666666777777777 889999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 624 l~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
+..|++|++++|+++++++++|.++..+|++++|++.|++|++++|++. |++++|.++..
T Consensus 520 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 520 HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999988 99999999844
|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-21 Score=176.07 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=89.9
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.||+++|+||++||.++ +..|.++ ++++++|+.+|+|+|||++. ++.++
T Consensus 21 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-i~~~~ 92 (119)
T 2q81_A 21 QRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLD--ISNAAGLGQVLEFMYTAKLS-LSPEN 92 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGG--GCCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHH
Confidence 3467889999999999999999999999999999999963 4578887 59999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHH
Q 005106 255 LLEILIFANKFCCERLKDACDRKLA 279 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~ 279 (714)
+.+++.+|++|+++.|++.|++||.
T Consensus 93 ~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 93 VDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999984
|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-21 Score=180.22 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=87.2
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|+|++|+|||.||+++|+||++||.++ ...+|.|++ ++++++|+.+++|+|||++. ++.++
T Consensus 27 l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~-~~~~~~f~~ll~~iYtg~~~-i~~~~ 100 (129)
T 3ga1_A 27 QRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPA-AVQPQSFQQILSFCYTGRLS-MNVGD 100 (129)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCT-TCCHHHHHHHHHHHHHSEEE-CCTTT
T ss_pred HHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECC-CCCHHHHHHHHHHHhCCccc-cCHHH
Confidence 4467889999999999999999999999999999999987 567899963 59999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHhh
Q 005106 255 LLEILIFANKFCCERLKDACDRKLASL 281 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~~ 281 (714)
+.+++.+|++|+++.|++.|++||.+.
T Consensus 101 ~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 101 QDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=186.76 Aligned_cols=247 Identities=13% Similarity=0.005 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------c--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhc------
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--------G--HIYSIAGLARLGYIKGHKLWAYEKLNSVISS------ 444 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--------~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------ 444 (714)
....++..+|.++...|++++|+..|++++++ . ...++..+|.++...|++++|+..+.+++..
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35677889999999999999999999999985 2 2446778999999999999999999999987
Q ss_pred --CCCcHHHHHHHHh----cCChhHHHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 005106 445 --VTPLGWMYQERSL----YCEGDKRWEDLDKATALD--------PTLSYPYMYRASSLMTKQNVEAALAEINRILGF-- 508 (714)
Q Consensus 445 --~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~Ld--------P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-- 508 (714)
.|..+.++.++|. .+++++|+..|++++++. |....++.++|.++..+|++++|+..|++++++
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3556777777764 356699999999999984 778899999999999999999999999999998
Q ss_pred ------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 005106 509 ------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (714)
Q Consensus 509 ------~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~ 581 (714)
+|. ...+..+|.++..+|++++|+..|++++++.|+..... . .. .....+..
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~--~~------~~~~~~~~----------- 243 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS--V--DD------ENKPIWMH----------- 243 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----------------CCHHHH-----------
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--C--Cc------chHHHHHH-----------
Confidence 554 56678899999999999999999999999866531000 0 00 00000000
Q ss_pred ccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 582 ~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
...+...+......+.+.+|+..++++....|..+.++.++|.++..+|++++|+..|
T Consensus 244 ----------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 244 ----------------------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp ----------------------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----------------------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1112223333444566666777777777777777777777777777777777777777
Q ss_pred HHHHhcCCC
Q 005106 662 EESIQMKRS 670 (714)
Q Consensus 662 e~Ai~i~~~ 670 (714)
++|+++.|.
T Consensus 302 ~~al~l~~~ 310 (311)
T 3nf1_A 302 EAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhc
Confidence 777777664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=185.11 Aligned_cols=271 Identities=15% Similarity=0.095 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch-------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcH------
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLG------ 449 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~------ 449 (714)
......+|.++...|++++|+..+++|++..+. .++..+|.++..+|++++|...+.+++++.+..+
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 455678899999999999999999999987322 1466789999999999999999999998755322
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 005106 450 WMYQERSL----YCEGDKRWEDLDKATALD--------PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA------ 511 (714)
Q Consensus 450 ~ay~~rg~----~~~~~eAl~d~~kAi~Ld--------P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~------ 511 (714)
.++.++|. .+++++|+..|++++++. |....++.++|.++..+|++++|+..+++++++.|.
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 22333332 245599999999999986 456678999999999999999999999999998774
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~-~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al 590 (714)
...+.+++.++...|++++|+..+++++++.+.... .............+.....++++| .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A------------------~ 235 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA------------------A 235 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH------------------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH------------------H
Confidence 245677899999999999999999999998544211 000011111111222334444444 6
Q ss_pred HHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHH
Q 005106 591 SVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 591 ~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
..++++++..|... ..+.++|.++..+|++++|...++++++..+.. .+++..+|.++..+|++++|...
T Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 67777777777642 356789999999999999999999999987643 36889999999999999999999
Q ss_pred HHHHHhcCCCH
Q 005106 661 AEESIQMKRSF 671 (714)
Q Consensus 661 ye~Ai~i~~~~ 671 (714)
+++|+.+.+..
T Consensus 316 l~~al~~~~~~ 326 (373)
T 1hz4_A 316 LLDALKLANRT 326 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhccc
Confidence 99999986643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=185.83 Aligned_cols=229 Identities=11% Similarity=0.052 Sum_probs=195.3
Q ss_pred ccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhC--CHHHHHHHHHHHHhcCCCcHHHHHHHHhc-----------CC
Q 005106 396 RKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKG--HKLWAYEKLNSVISSVTPLGWMYQERSLY-----------CE 460 (714)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G--~~~~A~~~~~~aI~~~p~~~~ay~~rg~~-----------~~ 460 (714)
....++|+..++++|.++| ..++.++|.+...+| +++++++.++++|..+|++.++|+.|+.. +.
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 46 EEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3445799999999999965 457889999999999 99999999999999999999999998642 45
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCC------HHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE--AALAEINRILGFKL-ALECLELRFCFFLALED------YQAA 531 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~--eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd------~e~A 531 (714)
.++++..++++++.+|.+..+|.+|+.++..+|+++ ++++.++++|+.+| +..+|+.|+.++..+|+ ++++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 689999999999999999999999999999999999 99999999999999 58999999999999998 9999
Q ss_pred HHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh-hhHHHHHHhhhhccccccccchHHHHHHHHHhC---CCChhHH
Q 005106 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD---APKGVLY 607 (714)
Q Consensus 532 l~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~-~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~---P~~~~~~ 607 (714)
+..+++++.++|++. .+.+.++.+....+. .+.+ ...+++.++++ |.++.++
T Consensus 206 l~~~~~aI~~~p~n~------SaW~y~~~ll~~~~~~~~~~------------------~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 206 LNYVKDKIVKCPQNP------STWNYLLGIHERFDRSITQL------------------EEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHHCSSCH------HHHHHHHHHHHHTTCCGGGG------------------HHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHhCCCCc------cHHHHHHHHHHhcCCChHHH------------------HHHHHHHHhccCCCCCCHHHH
Confidence 999999999999993 333333322222222 2212 33566666666 9999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH-hCCCChhHHHHHHHHH
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQ-HAASDHERLVYEGWIL 648 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~-l~P~~~ea~~~~G~~l 648 (714)
..++.++.++|+.++|++.|+++.+ ++|-....+.++|..+
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 9999999999999999999999997 8999999998888654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=194.96 Aligned_cols=282 Identities=14% Similarity=0.044 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhccch---HHHHHHHHHHHhccchhhHhhHHHHHHHhC-----CHHHHHHHHHHHHhcCCC-----cHH
Q 005106 384 LAFHQLGCVRLLRKEY---DEAEHLFEAAVNAGHIYSIAGLARLGYIKG-----HKLWAYEKLNSVISSVTP-----LGW 450 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y---~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G-----~~~~A~~~~~~aI~~~p~-----~~~ 450 (714)
.+++++|.++...|++ ++|+.+|++|++. ++.+++.+|.+++..| ++++|+.+|.++++..+. +|.
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~ 114 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAM 114 (452)
T ss_dssp TGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445556555555555 5666666666555 5555555665444444 555566666666554332 222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH----HHHHHhcCCCHHHHHHHHHHHHhcC
Q 005106 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAE----INRILGFKLALECLELRFCFFLALE 526 (714)
Q Consensus 451 ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~----~~kAL~l~P~~~~~~~R~~~~~~lg 526 (714)
+|...+......+++..+.++.+ +.++.+++++|.+|...+.+++++.. ++++..-+ +.+++++|.+|...|
T Consensus 115 ~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~--~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 115 LYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT--DICYVELATVYQKKQ 190 (452)
T ss_dssp HHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC--TTHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcC
Confidence 23222222222334444444432 22345555555555555544433333 44444333 346677888888888
Q ss_pred ---CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh----hhhhHH------------HHHHhhhhc-c--ccc
Q 005106 527 ---DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI----DNWTIA------------DCWLQLYDR-W--SSV 584 (714)
Q Consensus 527 ---d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~----~~~~~A------------~~~~~l~~~-~--~~~ 584 (714)
++++|+..|+++.+.+|...... ..++.+.... +++++| .++..++.. + ...
T Consensus 191 ~~~~~~~A~~~~~~aa~~g~~~a~~~------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRGTVTAQRV------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPEL 264 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCHHHH------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGG
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Confidence 88888888888888888774421 1111111110 111122 112222211 0 112
Q ss_pred cccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCH
Q 005106 585 DDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLN-----CPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHC 654 (714)
Q Consensus 585 ~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg-----~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~ 654 (714)
.|.. |+..|+++++ ++++.+++++|.++. .| ++++|+..|++|. |+++++++++|.++.. ..++
T Consensus 265 ~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRA--ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCH
T ss_pred CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCH
Confidence 2222 4555555553 335555555555555 33 5555555555555 5555555555554444 2255
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 655 EEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 655 eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
++|+..|++|.+.. +..|.++.|+.+..
T Consensus 339 ~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 339 QKALDHLLTAARNG-QNSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHHHHHHHHTTT-CTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhC-hHHHHHHHHHHHHh
Confidence 55555555555532 22355555555554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-17 Score=168.63 Aligned_cols=208 Identities=11% Similarity=0.025 Sum_probs=169.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALC 533 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~e~Al~ 533 (714)
++|+..|++|++ |+++.++.++|.++.. .+++++|+..|+++++++ ++.+++++|.+|.. .|++++|+.
T Consensus 23 ~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~ 99 (273)
T 1ouv_A 23 TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQ 99 (273)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHH
Confidence 445555566666 7788899999999999 999999999999999886 68889999999999 999999999
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHh----hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHH
Q 005106 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (714)
Q Consensus 534 d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~ 609 (714)
.|+++++++ + ..+...++.+... .+++++| +..++++++.+ ++.++++
T Consensus 100 ~~~~a~~~~--~------~~a~~~lg~~~~~~~~~~~~~~~A------------------~~~~~~a~~~~--~~~a~~~ 151 (273)
T 1ouv_A 100 YYSKACDLK--Y------AEGCASLGGIYHDGKVVTRDFKKA------------------VEYFTKACDLN--DGDGCTI 151 (273)
T ss_dssp HHHHHHHTT--C------HHHHHHHHHHHHHCSSSCCCHHHH------------------HHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHcC--C------ccHHHHHHHHHHcCCCcccCHHHH------------------HHHHHHHHhcC--cHHHHHH
Confidence 999999985 3 2234444444433 4444444 88999999986 7889999
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 005106 610 QSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (714)
Q Consensus 610 ~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~ 681 (714)
+|.++.. .+++++|+..|++|++. +++++++++|+++.. .|++++|+..|++|+++.| ..++++.|.++
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~ 228 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 9999999 99999999999999988 468999999999999 9999999999999999987 67999999999
Q ss_pred hccCCCCCchhhHHHHHHHhhc
Q 005106 682 ADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
....-....-..-+..++.|+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHH
Confidence 8732222223344555666553
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=178.93 Aligned_cols=202 Identities=10% Similarity=0.029 Sum_probs=151.6
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN--VEAALAEINRILGFKL-ALECLELRFCFFLALED-YQAALCDVQA 537 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r--~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~lgd-~e~Al~d~~~ 537 (714)
++++..+++++..+|.++.+|++|+.++..+++ ++++++.++++|+++| ++.+|..|+++...+|+ +++++..+.+
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 788889999999999999999999999999985 8999999999999999 58899999999999998 6999999999
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc--ccc-chHHHHHHHHHhCCCChhHHHHHHHHH
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV--DDI-GSLSVIYQMLESDAPKGVLYFRQSLLL 614 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~--~d~-~al~~~~qaL~l~P~~~~~~~~~g~~L 614 (714)
+++.+|.|.- +.+.++.+.........+. ..... +.+ +++..++++|..+|++..+|+.+.-++
T Consensus 171 ~I~~~p~N~S------AW~~R~~ll~~l~~~~~~~-------~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 171 LITRNFSNYS------SWHYRSCLLPQLHPQPDSG-------PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHCSCCHH------HHHHHHHHHHHHSCCC-------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHCCCCHH------HHHHHHHHHHHhhhccccc-------cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999998832 3333333322221000000 00000 011 148899999999999999997555555
Q ss_pred HHc-----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCHHHHHH
Q 005106 615 LRL-----------NCPEAAMRSLQLARQHAASDHERLVYEGWILY---DTSHCEEGLRKAEESIQMKRSFEAFFL 676 (714)
Q Consensus 615 ~~l-----------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly---~~G~~eeAl~~ye~Ai~i~~~~~a~~~ 676 (714)
.+. +..++++..++++++++|++...+.....+.- ..|..++....+.+.++++|-=.-++.
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 444 45789999999999999999655444433322 368999999999999999998775553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=173.39 Aligned_cols=172 Identities=10% Similarity=-0.005 Sum_probs=121.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 005106 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL----------------RFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 478 ~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~----------------R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
.+..+..+|..++..|++++|+..|+++++++|+ +..++. +|.++..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777664 556666 67777777777777777777777
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC- 619 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~- 619 (714)
++|++. .+...++.+....+++++| +..|+++|+++|+++.+|+++|.++..+|.
T Consensus 83 ~~p~~~------~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 83 KAPNNV------DCLEACAEMQVCRGQEKDA------------------LRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HCTTCH------HHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 777763 2344444444445555555 666777777777778888999998877764
Q ss_pred -hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 620 -PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 620 -~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
.++|...+++++...|. ..+++++|.+++.+|++++|+..|++|++++|+.++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 193 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHH
T ss_pred HHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHH
Confidence 45677888888754443 4588999999999999999999999999999998743
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=187.66 Aligned_cols=230 Identities=10% Similarity=-0.048 Sum_probs=138.2
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhc----c----chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc-------HHH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNA----G----HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-------GWM 451 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~----~----~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~-------~~a 451 (714)
+.+|..+...|++++|+..|++|+++ + ...++.++|.++..+|+++.|+..+.+|+++.+.. +.+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 44666666667777777777766664 1 23345566666666666666666666666653321 223
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhcCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CC-HHH
Q 005106 452 YQERSL----YCEGDKRWEDLDKATALDPTLS------YPYMYRASSLMTKQNVEAALAEINRILGF-----K-LA-LEC 514 (714)
Q Consensus 452 y~~rg~----~~~~~eAl~d~~kAi~LdP~~~------~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-----~-P~-~~~ 514 (714)
+.+.|. .+++++|+..|++|+++.|... .+|.++|.++..+|++++|+..|++|+++ + |. +.+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 333322 1233555555555554443332 34555555555555555555555555542 2 32 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 005106 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~ 594 (714)
+.++|.++..+|++++|+..|++++++.+...
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------------------ 298 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG------------------------------------------------ 298 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------------------------------------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC------------------------------------------------
Confidence 44455555555555555555555554433210
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 595 QMLESDAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
+|.....+..+|.++...|+ .++|+..++++ ...|...+++.++|.++..+|++++|+..|++|+++..+
T Consensus 299 -----~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 299 -----DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp -----CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred -----CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 22222335568888888888 88899988887 667777889999999999999999999999999987654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=186.27 Aligned_cols=233 Identities=11% Similarity=-0.003 Sum_probs=166.6
Q ss_pred hhhHhhHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHh----cCChhHHHHHHHHHHhc--------
Q 005106 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISS--------VTPLGWMYQERSL----YCEGDKRWEDLDKATAL-------- 474 (714)
Q Consensus 415 ~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~--------~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~L-------- 474 (714)
..++..+|.++...|++++|+..+.+++++ .|..+.++..+|. .+++++|+..|++|+++
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788999999999999999999999995 5666777777764 35669999999999998
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 005106 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--------LA-LECLELRFCFFLALEDYQAALCDVQAILTL---- 541 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~--------P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L---- 541 (714)
+|....+|.++|.++..+|++++|+..|++++++. |. ...+.++|.++..+|++++|+..|++++++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999984 33 456778999999999999999999999998
Q ss_pred ----CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC---------ChhHHH
Q 005106 542 ----SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---------KGVLYF 608 (714)
Q Consensus 542 ----~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~---------~~~~~~ 608 (714)
+|.. ..+...++.+....+++++| +..+++++++.|. ....+.
T Consensus 187 ~~~~~~~~------~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 187 LGPDDPNV------AKTKNNLASCYLKQGKFKQA------------------ETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp SCTTCHHH------HHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHHHHHHHHHC------CCHHH
T ss_pred hCCCCHHH------HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 4443 33455555555666666666 6778888876443 222222
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCC
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQD 687 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~ 687 (714)
.. ..+...+..+...+.+++|+..+++++...|... +++..|.++....-
T Consensus 243 ~~----------------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~- 293 (311)
T 3nf1_A 243 HA----------------------------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK- 293 (311)
T ss_dssp HH----------------------------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC-
T ss_pred HH----------------------------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC-
Confidence 22 2334444455567888888889999998888887 88888888876542
Q ss_pred CCchhhHHHHHHHhhc
Q 005106 688 SSCSSTVVSLLEDALK 703 (714)
Q Consensus 688 ~~~~~~~~~~~~~~~~ 703 (714)
-..-+..+++|++
T Consensus 294 ---~~~A~~~~~~al~ 306 (311)
T 3nf1_A 294 ---FEAAETLEEAAMR 306 (311)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH
Confidence 3445666666664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-18 Score=173.89 Aligned_cols=182 Identities=9% Similarity=0.033 Sum_probs=156.8
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 470 kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
...+++|+++..++++|..++..|++++|+..|+++++.+|+ +.+++.+|.++..+|++++|+..|++++++.|++
T Consensus 6 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 6 GSGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 356789999999999999999999999999999999999994 5778899999999999999999999999999976
Q ss_pred hhhhhhHHHHHHHHHHHHh--------hhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH----------
Q 005106 546 RMFEGRVAASQLHMLVREH--------IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY---------- 607 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~--------~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~---------- 607 (714)
... ..+...++.+... .+++++| +..++++++.+|+++.++
T Consensus 86 ~~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 86 PRV---PQAEYERAMCYYKLSPPYELDQTDTRKA------------------IEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp TTH---HHHHHHHHHHHHHHCCCTTSCCHHHHHH------------------HHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred chh---HHHHHHHHHHHHHhcccccccchhHHHH------------------HHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 321 2344445544444 5555555 889999999999998888
Q ss_pred -------HHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 005106 608 -------FRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDT----------SHCEEGLRKAEESIQM 667 (714)
Q Consensus 608 -------~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~~~G~~ly~~----------G~~eeAl~~ye~Ai~i 667 (714)
+++|.++.++|++++|+..|+++++..|+ ..++++++|.+++.+ |++++|+..|++++++
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999 567999999999987 9999999999999999
Q ss_pred CCCHH
Q 005106 668 KRSFE 672 (714)
Q Consensus 668 ~~~~~ 672 (714)
.|+..
T Consensus 225 ~p~~~ 229 (261)
T 3qky_A 225 FPDSP 229 (261)
T ss_dssp CTTCT
T ss_pred CCCCh
Confidence 99874
|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-20 Score=170.24 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=85.6
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
...++.+|||+|+|||++|+|||.|||++|+||++ ....|+|+ ++++++|+.+|+|+|||++. ++.++
T Consensus 24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~--~v~~~~f~~ll~fiYtg~~~-i~~~~ 91 (119)
T 3m5b_A 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGE--GISPSTFAQLLNFVYGESVE-LQPGE 91 (119)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCS--SCCHHHHHHHHHHHTTCCEE-ECGGG
T ss_pred HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeC--CCCHHHHHHHHHHHcCCCcC-cCHHH
Confidence 34678999999999999999999999999999985 34678888 59999999999999999999 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHh
Q 005106 255 LLEILIFANKFCCERLKDACDRKLAS 280 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~ 280 (714)
+.+++.+|++|+++.|++.|++++..
T Consensus 92 v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 92 LRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999999999999999998764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=209.12 Aligned_cols=186 Identities=13% Similarity=0.106 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC--CH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALE--DY 528 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r----------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg--d~ 528 (714)
++|++.+++||+++|+++.+|++||.++..+|+ +++|++.++++|+.+|. +.+|+.|++++..+| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 788999999999999999999999999999999 99999999999999995 899999999999999 77
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh-hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH
Q 005106 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (714)
Q Consensus 529 e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~ 607 (714)
++|+..+++++++||++.. |...++-+..... .+++ ++..++++|+.+|.+..+|
T Consensus 126 ~~el~~~~k~l~~d~~N~~------aW~~R~~~l~~l~~~~~~------------------el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 126 ARELELCARFLEADERNFH------CWDYRRFVAAQAAVAPAE------------------ELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTCCCHHH------------------HHHHHHTTTTTTCCCHHHH
T ss_pred HHHHHHHHHHHhhcccccc------HHHHHHHHHHHcCCChHH------------------HHHHHHHHHHHCCCCccHH
Confidence 9999999999999999843 3333333322223 3333 3889999999999999999
Q ss_pred HHHHHHHHHc--------------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHH------------HHHHH
Q 005106 608 FRQSLLLLRL--------------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE------------GLRKA 661 (714)
Q Consensus 608 ~~~g~~L~~l--------------g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ee------------Al~~y 661 (714)
+++|.++.++ +.+++|++.+++|+.++|++..+++|+||++...|++++ |+..|
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f 261 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCF 261 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEe
Confidence 9999999997 567999999999999999999999999999999999888 77778
Q ss_pred HHHHhcCCCH
Q 005106 662 EESIQMKRSF 671 (714)
Q Consensus 662 e~Ai~i~~~~ 671 (714)
.+|+.++|+.
T Consensus 262 ~~~i~~~~~~ 271 (567)
T 1dce_A 262 SRPLTVGSRM 271 (567)
T ss_dssp EEEECTTBTT
T ss_pred ccceeccccc
Confidence 9999999874
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=170.73 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=97.5
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (714)
+|.++..+|.+ ++|++.|.+|+..+|+++.+++++|.+|.++|++++|+..|+++|+++|+ +.+|.++|.++..+|
T Consensus 3 LG~~~~~~~~~---e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADV---ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHH---HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChH---HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45555666655 77777777777777777777777777777777777777777777777774 677777777777777
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 005106 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~ 606 (714)
++++|+..|+++++++|++ +++
T Consensus 80 ~~~~A~~~~~~al~~~p~~----------------------------------------------------------~~~ 101 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQ----------------------------------------------------------KDL 101 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTC----------------------------------------------------------HHH
T ss_pred chHHHHHHHHHHHHhCCCC----------------------------------------------------------HHH
Confidence 7777777666666666654 344
Q ss_pred HHHHHHHHHHcCChHHHHHH-HHHHHHhCCCChhHHHHHHHHHHhcCC
Q 005106 607 YFRQSLLLLRLNCPEAAMRS-LQLARQHAASDHERLVYEGWILYDTSH 653 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~-~~~Al~l~P~~~ea~~~~G~~ly~~G~ 653 (714)
|+++|.++.++|++++|... +++|++++|++++++..++.++..+|+
T Consensus 102 ~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 102 VLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 56666666666666555544 366777777777776666766666664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=173.51 Aligned_cols=163 Identities=9% Similarity=-0.071 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhh----------------HHHHHHHhCCHHHHHHHHHHHHhc
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAG----------------LARLGYIKGHKLWAYEKLNSVISS 444 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~----------------lg~~~~~~G~~~~A~~~~~~aI~~ 444 (714)
...+...|..++..|++++|+..|++|++++| ..++++ +|.++..+|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999965 446778 999999999999999999999999
Q ss_pred CCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCHHHHHHH
Q 005106 445 VTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN--VEAALAEINRILGFKLALECLELR 518 (714)
Q Consensus 445 ~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r--~~eAl~~~~kAL~l~P~~~~~~~R 518 (714)
+|+++.+|.++|.. +++++|+..|++|++++|+++.+|+++|.+|...|+ ..+|+..|++++..+|....++.+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 163 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 99999999998863 677999999999999999999999999999987754 567788999988544434567789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 519 FCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 519 ~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
|.++..+|++++|+.+|++|++++|+.
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999986
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=180.42 Aligned_cols=207 Identities=10% Similarity=-0.006 Sum_probs=157.2
Q ss_pred HHHHHHHHHhcCCCc-HH-HHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 005106 434 AYEKLNSVISSVTPL-GW-MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL- 510 (714)
Q Consensus 434 A~~~~~~aI~~~p~~-~~-ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P- 510 (714)
|.+.+.+|-+.-+.. |. .|+..+.-.++++|+..|++| |.+|..+|++++|+..|++|+++.+
T Consensus 4 a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~ 69 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKK 69 (292)
T ss_dssp HHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445555555555542 22 233210001238888888887 6789999999999999999999843
Q ss_pred -----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh-hhhhHHHHHHhhhhcccc
Q 005106 511 -----A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-DNWTIADCWLQLYDRWSS 583 (714)
Q Consensus 511 -----~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~-~~~~~A~~~~~l~~~~~~ 583 (714)
. ..++.++|.+|..+|++++|+..|++|+++.|+.....+...+...++.+.... .++++|
T Consensus 70 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A------------ 137 (292)
T 1qqe_A 70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA------------ 137 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH------------
T ss_pred hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHH------------
Confidence 1 456788999999999999999999999999887533222233444455444443 555555
Q ss_pred ccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHh
Q 005106 584 VDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-------RLVYEGWILYD 650 (714)
Q Consensus 584 ~~d~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e-------a~~~~G~~ly~ 650 (714)
+..|++||++.|.. +.++.++|.++.++|++++|+..|++|+++.|++.. ++.++|.++..
T Consensus 138 ------~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 211 (292)
T 1qqe_A 138 ------IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211 (292)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 88999999999976 578999999999999999999999999999999875 57899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCHH
Q 005106 651 TSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 651 ~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+|++++|+..|++++.++|+|.
T Consensus 212 ~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 212 ATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp TTCHHHHHHHHHGGGCC-----
T ss_pred cCCHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999986
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-17 Score=183.23 Aligned_cols=314 Identities=11% Similarity=0.027 Sum_probs=198.8
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc-hhhHhhHHH-HHHHhCCHHHHHH--
Q 005106 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-IYSIAGLAR-LGYIKGHKLWAYE-- 436 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~-~~a~~~lg~-~~~~~G~~~~A~~-- 436 (714)
+.+.+..++++++...|.. ...+...|......|++++|+..|++|++..| ...|...+. +....|+.+.|.+
T Consensus 27 ~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~ 103 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSS---GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKM 103 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHH
Confidence 3445556666665543322 34555667777777788888888888777743 334444443 3345566666544
Q ss_pred --HHHHHHhc---CCCcHHHHHHHHhc-------------CChhHHHHHHHHHHhcCCCCh--HHHHHHHH---------
Q 005106 437 --KLNSVISS---VTPLGWMYQERSLY-------------CEGDKRWEDLDKATALDPTLS--YPYMYRAS--------- 487 (714)
Q Consensus 437 --~~~~aI~~---~p~~~~ay~~rg~~-------------~~~~eAl~d~~kAi~LdP~~~--~ay~~rg~--------- 487 (714)
.|++++.. +|+.+..|...+.+ ++.++|...|++|++ .|... ..|...+.
T Consensus 104 ~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~ 182 (530)
T 2ooe_A 104 AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHL 182 (530)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhH
Confidence 66666553 45555555432211 223777778888887 56543 11111000
Q ss_pred ------------------------------------------------------HHHh------cCC----HHHHHHHHH
Q 005106 488 ------------------------------------------------------SLMT------KQN----VEAALAEIN 503 (714)
Q Consensus 488 ------------------------------------------------------~l~~------l~r----~~eAl~~~~ 503 (714)
+..+ +++ .+.|+..|+
T Consensus 183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence 0000 011 125566777
Q ss_pred HHHhcCCC-HHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHHHHhhhh
Q 005106 504 RILGFKLA-LECLELRFCFFLA-------LEDYQ-------AALCDVQAILT-LSPDYRMFEGRVAASQLHMLVREHIDN 567 (714)
Q Consensus 504 kAL~l~P~-~~~~~~R~~~~~~-------lgd~e-------~Al~d~~~al~-L~P~~~~~~~~~~a~~~~~~l~~~~~~ 567 (714)
+||..+|+ ++.|...+.++.. +|+++ +|+..|++|++ ++|++.. +....+.+....++
T Consensus 263 ~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~------l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 263 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML------LYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH------HHHHHHHHHHHTTC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH------HHHHHHHHHHhcCC
Confidence 77777774 6666666666554 67765 77777777776 6776632 22223333333333
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005106 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG-VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (714)
Q Consensus 568 ~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~-~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~ 646 (714)
+++ |..+|+++|+++|.++ .+|.+.|.++.++|+.++|...|++|++..|.+...+...|+
T Consensus 337 ~~~------------------A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 337 YEK------------------VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp HHH------------------HHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred HHH------------------HHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 333 4778999999999885 689999999999999999999999999998888888877777
Q ss_pred HHH-hcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc-CCC
Q 005106 647 ILY-DTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK-CPS 706 (714)
Q Consensus 647 ~ly-~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 706 (714)
+.+ .+|++++|...|++|+++.|+.. .|...|..+... ..-..+..++|.|+. ||.
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~----g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL----NEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT----TCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC----CCHhhHHHHHHHHHhccCC
Confidence 744 58999999999999999999766 666666555432 234567888888886 453
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=169.57 Aligned_cols=144 Identities=10% Similarity=-0.020 Sum_probs=126.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHH
Q 005106 484 YRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVR 562 (714)
Q Consensus 484 ~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~ 562 (714)
++|.++...|++++|++.+.+++..+|+ +..++.+|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~----------------- 64 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD----------------- 64 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------
Confidence 5789999999999999999999999886 6777889999999999999999888888887776
Q ss_pred HhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 005106 563 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (714)
Q Consensus 563 ~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~ 642 (714)
+.+|+++|.++.++|++++|+..|++|++++|+++++++
T Consensus 65 -----------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 65 -----------------------------------------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence 457889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHH-HHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 643 YEGWILYDTSHCEEGLRKA-EESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 643 ~~G~~ly~~G~~eeAl~~y-e~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
++|.+++.+|++++|...| ++|++++|++. +|.+|+..+.-.+
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 9999999999999988775 99999999988 9999998876443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-19 Score=161.45 Aligned_cols=122 Identities=18% Similarity=0.151 Sum_probs=109.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 469 ~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
.++..+||+.+.+|.++|.++...|++++|+..|++||+++|+ +..+.++|.++..+|++++|+.+|+++++++|++
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 80 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-- 80 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--
Confidence 3566799999999999999999999999999999999999996 8889999999999999999999888888888776
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 005106 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (714)
Q Consensus 548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~ 627 (714)
+.+|+++|.++..+|++++|+..|
T Consensus 81 --------------------------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 81 --------------------------------------------------------IKGYIRKAACLVAMREWSKAQRAY 104 (126)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------------------------------hHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356888999999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHH
Q 005106 628 QLARQHAASDHERLVYEGWIL 648 (714)
Q Consensus 628 ~~Al~l~P~~~ea~~~~G~~l 648 (714)
++|++++|++.+++.++|.+|
T Consensus 105 ~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 105 EDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999998775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=175.59 Aligned_cols=69 Identities=4% Similarity=-0.154 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCC---ChhHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCC
Q 005106 590 LSVIYQMLESDAP---KGVLYFRQSLLLLRL----------NCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSH 653 (714)
Q Consensus 590 l~~~~qaL~l~P~---~~~~~~~~g~~L~~l----------g~~eeAl~~~~~Al~l~P~~~---ea~~~~G~~ly~~G~ 653 (714)
+..++++++..|. .+.+++++|.++..+ |++++|+..|+++++..|++. ++...++.++..+|+
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 345777888888876 899999999999999999995 566666777766666
Q ss_pred HHHHH
Q 005106 654 CEEGL 658 (714)
Q Consensus 654 ~eeAl 658 (714)
++++.
T Consensus 248 ~~~~~ 252 (261)
T 3qky_A 248 LEGDA 252 (261)
T ss_dssp HHTCT
T ss_pred hhhhh
Confidence 65543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-16 Score=174.09 Aligned_cols=186 Identities=9% Similarity=-0.035 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-cCCC-HHHHHHHHHHHHhc
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMT-------KQNVE-------AALAEINRILG-FKLA-LECLELRFCFFLAL 525 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~-------l~r~~-------eAl~~~~kAL~-l~P~-~~~~~~R~~~~~~l 525 (714)
+.++..|++|+..+|+++..|+++|..+.. +|+++ +|+..|++|++ ++|+ ...|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 377889999999999999999999999986 79987 99999999997 8996 88888999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
|++++|...|+++++++|++.. .+....+.+....+++++| ...|++|++..|....
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~~~~~~~~~~A------------------~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPT-----LVYIQYMKFARRAEGIKSG------------------RMIFKKAREDARTRHH 391 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHH-----HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHTCTTCCTH
T ss_pred CCHHHHHHHHHHHhCccccCch-----HHHHHHHHHHHHhcCHHHH------------------HHHHHHHHhccCCchH
Confidence 9999999999999999998731 1233333333334445555 7789999999999888
Q ss_pred HHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 606 LYFRQSLL-LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 606 ~~~~~g~~-L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
.+...+.+ +..+|++++|...|++|++..|++++++.+.|..+..+|++++|...|++|+...|.
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 88777665 346999999999999999999999999999999999999999999999999998653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.5e-18 Score=158.90 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
...|..+|.++...|++++|+..|+++++.+|+ +..+..+|.++...|++++|+..++++++++|++.. +...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~ 81 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK------VATV 81 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHH
Confidence 456677777777777777777777777777774 666666777777777777777777777777777632 2333
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
.+.+....+++++| +..+++++..+|.++.+++.+|.++..+|++++|+..++++++.+|++
T Consensus 82 ~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 82 LGLTYVQVQKYDLA------------------VPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCHHHH------------------HHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 33333344444444 666777777788888889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
+.++.++|.+++.+|++++|+..+++++++.|++.
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 99999999999999999999999999999988764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-18 Score=181.50 Aligned_cols=232 Identities=9% Similarity=-0.010 Sum_probs=177.4
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--c-------ch
Q 005106 348 YCLLSEVAMNLDPRSDKTVCFLERLLESA---ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--G-------HI 415 (714)
Q Consensus 348 ~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a---~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~--~-------~~ 415 (714)
+++...+..... +.+.....++.+.... ++....+.+++++|.++...|++++|+.+|++|+++ . ..
T Consensus 106 ~~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 106 NFFRGMYELDQR-EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 334555554433 5677778888876653 334456788999999999999999999999999987 1 12
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHh----cCChhHHHHHHHHHHh-----cC-CCCh
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERSL----YCEGDKRWEDLDKATA-----LD-PTLS 479 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~------~~~ay~~rg~----~~~~~eAl~d~~kAi~-----Ld-P~~~ 479 (714)
.++.++|.++..+|++++|+..+++++++.+. .+.+|.++|. .+++++|+..|++|++ .+ |..+
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 36788999999999999999999999987442 2346666654 2566999999999999 57 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKL-----AL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-----~~-~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
.++.++|.++..+|++++|+..|++|+++.+ .. ..+...+.++...|++ ..+++++.+
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~al~~------------ 328 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE----EAIQGFFDF------------ 328 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH----HHHHHHHHH------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH----HHHHHHHHH------------
Confidence 9999999999999999999999999999843 22 2235577888888887 223333221
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
++++ ...|....++.++|.++..+|++++|+..+++|+++
T Consensus 329 ---------------------------------------~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 329 ---------------------------------------LESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp ---------------------------------------HHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------------------------HHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1111 222334567888999999999999999999999998
Q ss_pred CCC
Q 005106 634 AAS 636 (714)
Q Consensus 634 ~P~ 636 (714)
...
T Consensus 369 ~~~ 371 (383)
T 3ulq_A 369 RQL 371 (383)
T ss_dssp HTS
T ss_pred HHH
Confidence 765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=167.05 Aligned_cols=168 Identities=13% Similarity=0.008 Sum_probs=141.3
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
+|.....+..+|.++...|++++|+..|+++++++|+ +.++..+|.++..+|++++|+..|+++++++| +..+.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~---- 76 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK---- 76 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH----
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH----
Confidence 5666778999999999999999999999999999996 88899999999999999999999999999999 64322
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
...+.+... ++ . +..+++..++++++++|+++.+++++|.++..+|++++|+..|++++++
T Consensus 77 --~~~~~~~~~-~~---~-------------~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 77 --SLIAKLELH-QQ---A-------------AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp --HHHHHHHHH-HH---H-------------TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHH-hh---c-------------ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 111111000 00 0 1223578999999999999999999999999999999999999999999
Q ss_pred CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 634 AASD--HERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 634 ~P~~--~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+|+. +.++.++|.++..+|+.++|+..|+++++
T Consensus 138 ~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9986 55999999999999999999999999986
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-17 Score=185.66 Aligned_cols=318 Identities=13% Similarity=0.039 Sum_probs=191.8
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHH---HH
Q 005106 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRK-----EYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKL---WA 434 (714)
Q Consensus 363 ~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g-----~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~---~A 434 (714)
.....+++++.+. ...+.+++|.++...+ ++++|+.+|++|++.++..++..+|.+|...++.. .+
T Consensus 55 ~~A~~~~~~A~~~------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a 128 (452)
T 3e4b_A 55 KQAEATYRAAADT------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNA 128 (452)
T ss_dssp ----------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCH
T ss_pred HHHHHHHHHHHhC------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHH
Confidence 3444555553322 4577899999776665 89999999999999999999999999999877644 34
Q ss_pred HHHHHHHHhcCC-----CcHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q 005106 435 YEKLNSVISSVT-----PLGWMYQERSLYC-EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRI 505 (714)
Q Consensus 435 ~~~~~~aI~~~p-----~~~~ay~~rg~~~-~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~---r~~eAl~~~~kA 505 (714)
+.++.++..... ++|..|...+.+. ..+++...+..|...+|+ +++++|.+|...| ++++|+..|+++
T Consensus 129 ~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 129 QQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 666665554322 1233333332221 113333344455444444 6666666666666 666666666666
Q ss_pred HhcCCC-HHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH--------
Q 005106 506 LGFKLA-LECLELRFCFFLAL----EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD-------- 572 (714)
Q Consensus 506 L~l~P~-~~~~~~R~~~~~~l----gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~-------- 572 (714)
++..|. ...+++.|.+|... +|+++|+..|+++. |++..+....+.....+ ...+++++|.
T Consensus 206 a~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~---~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 206 VSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDF---PELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHS---GGGCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHH
Confidence 666553 44445555555444 56666666666655 55432211111110000 0112222221
Q ss_pred -----HHHhhhhcccc----ccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCh
Q 005106 573 -----CWLQLYDRWSS----VDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 573 -----~~~~l~~~~~~----~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
++..++..+.. -.|.. |+..|++|. |+++.+++++|.++.. ..++++|+..|++|.+ +.++
T Consensus 280 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~ 354 (452)
T 3e4b_A 280 ADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQN 354 (452)
T ss_dssp TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCT
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChH
Confidence 12222222111 11333 788999999 9999999999998887 3499999999999987 5689
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 005106 639 ERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 639 ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
++++++|.++.. ..++++|+..|++|.+..+....+.+..+ ...++|+.-.....++++..+
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l---~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQL---EAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHH
Confidence 999999999885 46999999999999998876666555544 456777766667777766543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-17 Score=177.82 Aligned_cols=236 Identities=11% Similarity=-0.030 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP----- 447 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--------~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~----- 447 (714)
.....++.+|..+...|+|++|+..|++|+++- .+.++.++|.++..+|+++.|+..+.+|+++.+.
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 344566789999999999999999999999871 2456788999999999999999999999987442
Q ss_pred --cHHHHHHHHh----cCChhHHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCC
Q 005106 448 --LGWMYQERSL----YCEGDKRWEDLDKATALDPT------LSYPYMYRASSLMTKQNVEAALAEINRILG-----FKL 510 (714)
Q Consensus 448 --~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~------~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~-----l~P 510 (714)
.+.++.+.|. .+++++|+..|++|+++.+. .+.++.++|.++..+|++++|+..|++|++ -+|
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 2334444443 24447777777777776332 245677777777777777777777777777 555
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 511 A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 511 ~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
. +.++.++|.++..+|++++|+..|++++++.+...
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------------- 295 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS------------------------------------------- 295 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC-------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-------------------------------------------
Confidence 4 45566677777777777777777777777765431
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+|.....+..++.++...|. .++|+..+++ ....|+..+.+..+|.+++.+|++++|+..|++|++
T Consensus 296 ----------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 296 ----------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp ----------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111122334445555566 6677777766 344556677888999999999999999999999998
Q ss_pred cCCC
Q 005106 667 MKRS 670 (714)
Q Consensus 667 i~~~ 670 (714)
+...
T Consensus 365 ~~~~ 368 (378)
T 3q15_A 365 AQED 368 (378)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-19 Score=161.97 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=84.0
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|+|||++|+|||.|||++|+||++||.++ ...|.++ ++++++|+.+++|+|||++..++.++
T Consensus 25 ~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~--~~~~~~f~~~l~~~Ytg~~~~~~~~~ 97 (116)
T 3fkc_A 25 QRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELS--FIRAEIFAEILNYIYSSKIVRVRSDL 97 (116)
T ss_dssp HHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHTTSCCCSCCHHH
T ss_pred HHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC--CCCHHHHHHHHHhhcCCCcCCCCHHH
Confidence 4467889999999999999999999999999999999976 5689998 59999999999999999993399999
Q ss_pred HHHHHHHHhhhChhhHHH
Q 005106 255 LLEILIFANKFCCERLKD 272 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~ 272 (714)
+.+++.+|++|+++.|++
T Consensus 98 ~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 98 LDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHhCccccCc
Confidence 999999999999999874
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=175.08 Aligned_cols=168 Identities=15% Similarity=-0.002 Sum_probs=147.0
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
-|+...++..+|..+.+.|++++|+..|+++++++|+ ++++.++|.++..+|++++|+..|+++++++|++....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~---- 188 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG---- 188 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH----
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH----
Confidence 4999999999999999999999999999999999996 88899999999999999999999999999999753211
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005106 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l 633 (714)
...+.......+.+. ++..++++++.+|+++++++++|.++..+|++++|+..|++++++
T Consensus 189 --~~~~~~l~~~~~~~~------------------a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 189 --LVAQIELLXQAADTP------------------EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp --HHHHHHHHHHHTSCH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhhcccCc------------------cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 111111111112222 478899999999999999999999999999999999999999999
Q ss_pred CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 634 AASD--HERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 634 ~P~~--~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
+|++ +.++.++|.++..+|+.++|+..|+++++
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999 99999999999999999999999999986
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=173.42 Aligned_cols=203 Identities=10% Similarity=-0.030 Sum_probs=129.2
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHh----cCChhHHHHHHHHHHhc--------CC
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSV--------TPLGWMYQERSL----YCEGDKRWEDLDKATAL--------DP 476 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~--------p~~~~ay~~rg~----~~~~~eAl~d~~kAi~L--------dP 476 (714)
++..+|.++..+|++++|+..+++++++. |..+.++.++|. .+++++|+..|++|+++ +|
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 34455555555555555555555555442 333444444442 13446666666666666 57
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGF--------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l--------~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
....+|.++|.++..+|++++|+..|++++++ .|. ...+.++|.++..+|++++|+..|++++++.|....
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999999998 554 567788999999999999999999999998554310
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH------cCChH
Q 005106 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR------LNCPE 621 (714)
Q Consensus 548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~------lg~~e 621 (714)
. ...|....++...+..... ...+.
T Consensus 205 ~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (283)
T 3edt_B 205 G-------------------------------------------------SVNGDNKPIWMHAEEREESKDKRRDSAPYG 235 (283)
T ss_dssp S-------------------------------------------------SCCSSCCCHHHHHHHHHHTTCCCCC-----
T ss_pred C-------------------------------------------------CcchhHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 0 0011111222222222222 12233
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 622 eAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
++...++.+....|+.+.++.++|.++..+|++++|+..|++|+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 34444444444567777888888888888888888888888888764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=188.23 Aligned_cols=161 Identities=12% Similarity=-0.018 Sum_probs=122.0
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
+.++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999999996 888899999999999999999988888
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (714)
++++|++ +.+++++|.++.++|
T Consensus 84 l~~~p~~----------------------------------------------------------~~~~~~la~~~~~~g 105 (568)
T 2vsy_A 84 SDAAPEH----------------------------------------------------------PGIALWLGHALEDAG 105 (568)
T ss_dssp HHHCTTC----------------------------------------------------------HHHHHHHHHHHHHTT
T ss_pred HhcCCCC----------------------------------------------------------HHHHHHHHHHHHHcC
Confidence 8888876 234567777778888
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDT---SHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~---G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
++++|+..|++|++++|++.+++.++|.++..+ |++++|++.|+++++++|+.. +|++.+
T Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 106 QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 888888888888888888888888888888888 888888888888888877765 665554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-17 Score=151.57 Aligned_cols=166 Identities=14% Similarity=0.032 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc-
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY- 458 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~- 458 (714)
....++.+|..+...|++++|+..|+++++.. ...++..+|.++...|++++|+..++++++..|+.+.++..+|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35677889999999999999999999999884 455678899999999999999999999999999988888887653
Q ss_pred ---CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 459 ---CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 459 ---~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
++.++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++.+|+ +..+..+|.++..+|++++|+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999996 78889999999999999999999
Q ss_pred HHHHHhhCCCchh
Q 005106 535 VQAILTLSPDYRM 547 (714)
Q Consensus 535 ~~~al~L~P~~~~ 547 (714)
|+++++++|++..
T Consensus 167 ~~~~~~~~~~~~~ 179 (186)
T 3as5_A 167 FKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHCCCG
T ss_pred HHHHHHcCCCchh
Confidence 9999999999853
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-16 Score=171.24 Aligned_cols=178 Identities=13% Similarity=0.056 Sum_probs=147.9
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc-C-CHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKLA-LECLELRFCFFLAL-E-DYQAALCDVQ 536 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~-r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l-g-d~e~Al~d~~ 536 (714)
.++|+..++++|.++|++..+|++||.++..+| .+++++..++++|..+|. +.+|+.|++++..+ | ++++++..++
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 378999999999999999999999999999999 499999999999999995 89999999988888 8 9999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
++++++|++.. +...++-+......++.+.. . .-.+++..++++|+.+|+|..+|++|+.++.+
T Consensus 150 k~L~~dpkNy~------AW~~R~wvl~~l~~~~~~~~--~--------~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 150 GSLLPDPKNYH------TWAYLHWLYSHFSTLGRISE--A--------QWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHTSSCTTCHH------HHHHHHHHHHHHHHTTCCCH--H--------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHhCCCCHH------HHHHHHHHHHHhccccccch--h--------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999998844 33333333333333331000 0 00124889999999999999999999999999
Q ss_pred cCC-------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCH
Q 005106 617 LNC-------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 654 (714)
Q Consensus 617 lg~-------~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~ 654 (714)
+++ .+++++.+++++.++|+|..+++|+.+++...|+-
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 998 78999999999999999999999999999998875
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=164.60 Aligned_cols=202 Identities=12% Similarity=-0.014 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---HHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW---MYQE 454 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-----~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~---ay~~ 454 (714)
..+++++|..+...|+|++|+..|+++++..|. .++..+|.+++.+|++++|+..|+++++.+|+... +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 346778888888899999999999998887443 46777888888888887777777666666665432 4444
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005106 455 RSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 455 rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
+|... + .+++.....|..++.++.+ +|++++|+..
T Consensus 84 ~g~~~--------~----~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~A~~~ 118 (225)
T 2yhc_A 84 RGLTN--------M----ALDDSALQGFFGVDRSDRD---------------------------------PQQARAAFSD 118 (225)
T ss_dssp HHHHH--------H----HHHC--------------C---------------------------------CHHHHHHHHH
T ss_pred HHHHH--------H----hhhhhhhhhhhccchhhcC---------------------------------cHHHHHHHHH
Confidence 44320 0 0112222233344444444 4455555555
Q ss_pred HHHHHhhCCCchhhh-hhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH
Q 005106 535 VQAILTLSPDYRMFE-GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (714)
Q Consensus 535 ~~~al~L~P~~~~~~-~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~ 613 (714)
|+++++..|+...+. .+......... .+ ...+.+|.+
T Consensus 119 ~~~~l~~~P~~~~a~~a~~~l~~~~~~---------~~---------------------------------~~~~~~a~~ 156 (225)
T 2yhc_A 119 FSKLVRGYPNSQYTTDATKRLVFLKDR---------LA---------------------------------KYEYSVAEY 156 (225)
T ss_dssp HHHHHTTCTTCTTHHHHHHHHHHHHHH---------HH---------------------------------HHHHHHHHH
T ss_pred HHHHHHHCcCChhHHHHHHHHHHHHHH---------HH---------------------------------HHHHHHHHH
Confidence 555555555443211 11111111110 00 122457888
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 614 LLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 614 L~~lg~~eeAl~~~~~Al~l~P~~~---ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+.+.|++++|+..|+++++..|+++ ++++.+|.+++.+|++++|+..++++....|+.
T Consensus 157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 8889999999999999999998876 789999999999999999999999888887763
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-16 Score=158.97 Aligned_cols=99 Identities=8% Similarity=-0.072 Sum_probs=73.2
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
+..|+++++.+|+++.++..+..+ +... ...+.....+|.+++.+|++++|+..|++++++.|
T Consensus 116 ~~~~~~~l~~~P~~~~a~~a~~~l----~~~~-------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 116 FSDFSKLVRGYPNSQYTTDATKRL----VFLK-------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHH----HHHH-------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHCcCChhHHHHHHHH----HHHH-------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc
Confidence 788999999999999876432221 1111 11234557899999999999999999999999999
Q ss_pred CH----HHHHHHHHHhhccCCCCCchhhHHHHHHHhhcCCCCcc
Q 005106 670 SF----EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL 709 (714)
Q Consensus 670 ~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (714)
+. ++++++|.++....- -..-++.++.+..-+++.+
T Consensus 179 ~~~~~~~a~~~l~~~~~~~g~----~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 179 DTQATRDALPLMENAYRQMQM----NAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp TSHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHCCSCCC
T ss_pred CCCccHHHHHHHHHHHHHcCC----cHHHHHHHHHHHhhCCCch
Confidence 86 489999998887653 3334566667666676655
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=150.68 Aligned_cols=121 Identities=15% Similarity=0.097 Sum_probs=106.2
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 005106 503 NRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (714)
Q Consensus 503 ~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~ 581 (714)
.|+..+||+ ++.+.++|..+...|+|++|+..|+++++++|++
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------ 46 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------------------------------------ 46 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------
Confidence 356678997 7888899999999999999999888888777775
Q ss_pred ccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 582 ~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
+.+|+++|.++.++|++++|+.++++|++++|+++++++++|.+++.+|++++|+..|
T Consensus 47 ----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 47 ----------------------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAY 104 (126)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHH-HHHHHHHHh
Q 005106 662 EESIQMKRSFE-AFFLKAYAL 681 (714)
Q Consensus 662 e~Ai~i~~~~~-a~~~~~~~~ 681 (714)
++|++++|++. |....|.+|
T Consensus 105 ~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 105 EDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCcCCHHHHHHHHHhc
Confidence 99999999988 776666543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-19 Score=190.54 Aligned_cols=148 Identities=14% Similarity=0.007 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHhc
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----------------ECLELRFCFFLAL 525 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~----------------~~~~~R~~~~~~l 525 (714)
++|+..|+++++++|+++.+|.++|.++..+|++++|+..|++||+++|+. .++.++|.++..+
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788888999999999999999999999999999999999999999999963 7788899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
|++++|+.+|++|++++|++ +.
T Consensus 210 g~~~~A~~~~~~al~~~p~~----------------------------------------------------------~~ 231 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNN----------------------------------------------------------EK 231 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTC----------------------------------------------------------HH
T ss_pred CCHHHHHHHHHHHHHhCCCc----------------------------------------------------------HH
Confidence 99999998888888877775 45
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQM 667 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA-l~~ye~Ai~i 667 (714)
+|+++|.++..+|++++|+..|++|++++|++.+++.++|.++..+|++++| -..|++.+..
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999 4567776653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=177.34 Aligned_cols=191 Identities=12% Similarity=0.050 Sum_probs=164.7
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCchhh
Q 005106 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSPDYRMF 548 (714)
Q Consensus 471 Ai~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg-d~e~Al~d~~~al~L~P~~~~~ 548 (714)
.|...|++..++.++..++...++.++|+..++++|.++|+ ..+|+.|+.++..+| ++++++..+++++..+|++..
T Consensus 46 ~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~- 124 (349)
T 3q7a_A 46 PIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ- 124 (349)
T ss_dssp CBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH-
T ss_pred eeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH-
Confidence 45667777888999999999999999999999999999996 899999999999999 699999999999999999854
Q ss_pred hhhHHHHHHHHHHHHhh-h-hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH-----
Q 005106 549 EGRVAASQLHMLVREHI-D-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE----- 621 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~-~-~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e----- 621 (714)
+.+.++.+.... . .++ +++..++++|+.+|.+..+|+.|+.++.++|+++
T Consensus 125 -----aW~hR~wlL~~l~~~~~~------------------~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 125 -----VWHHRLLLLDRISPQDPV------------------SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp -----HHHHHHHHHHHHCCSCCH------------------HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred -----HHHHHHHHHHHhcCCChH------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchh
Confidence 233333222222 2 222 2488999999999999999999999999999998
Q ss_pred ---HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 622 ---AAMRSLQLARQHAASDHERLVYEGWILYDTSH-------CEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 622 ---eAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~-------~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
+++..++++++.+|.|..|+.++|+++..+|+ ++++++.++++|.++|+++ ||+.+...+...+
T Consensus 182 ~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998 7999999999999999999 9977666665433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-15 Score=161.28 Aligned_cols=302 Identities=14% Similarity=0.062 Sum_probs=221.5
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--------hhhH
Q 005106 349 CLLSEVAMNLDPRSDKTVCFLERLLESAE-T-DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--------IYSI 418 (714)
Q Consensus 349 ~~l~~V~~d~~~rs~~~~~LLe~Lv~~a~-~-~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--------~~a~ 418 (714)
.++.++..... +.+....+++++....+ . ......++..+|.++...|++++|+..|++|+++.+ ..++
T Consensus 18 ~~~a~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 18 ALRAQVAINDG-NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44455544433 45566677777555332 2 233456788999999999999999999999998722 2236
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCC-----hHH
Q 005106 419 AGLARLGYIKGHKLWAYEKLNSVISSV--------TPLGWMYQERSL----YCEGDKRWEDLDKATALDPTL-----SYP 481 (714)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~--------p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~-----~~a 481 (714)
.++|.++..+|++++|+..+++++++. |..+.++.++|. .++.++|...|++++++.|.. ..+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 779999999999999999999999874 334455555543 256699999999999998864 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA---LECLE-----LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~-----~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~ 553 (714)
|.++|.++...|++++|+..+++++++.+. +..+. .++.++...|++++|+..++++++..|....+. ..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~ 254 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL--QG 254 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG--HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh--HH
Confidence 999999999999999999999999987432 11221 244568899999999999999999887642211 11
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCChHHHHHHH
Q 005106 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSL 627 (714)
Q Consensus 554 a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~------~~~~~~~g~~L~~lg~~eeAl~~~ 627 (714)
.....+.+....+++++| +..++++++..+.. ..++..+|.++..+|++++|...+
T Consensus 255 ~~~~la~~~~~~g~~~~A------------------~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPA------------------EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 223334444445555555 67788887776542 358889999999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005106 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (714)
Q Consensus 628 ~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~ 678 (714)
++|+++.+..+.. ..+.+.| +.....+++.+...|..+++--++
T Consensus 317 ~~al~~~~~~g~~-----~~~~~~g--~~~~~ll~~~~~~~~~~~~~~~~~ 360 (373)
T 1hz4_A 317 LDALKLANRTGFI-----SHFVIEG--EAMAQQLRQLIQLNTLPELEQHRA 360 (373)
T ss_dssp HHHHHHHHHHCCC-----HHHHTTH--HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHhccccHH-----HHHHHcc--HHHHHHHHHHHhCCCCchHHHHHH
Confidence 9999998753322 2244455 677788889999999877776555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-17 Score=170.37 Aligned_cols=206 Identities=12% Similarity=0.022 Sum_probs=150.4
Q ss_pred hccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhc
Q 005106 395 LRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATAL 474 (714)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~L 474 (714)
..|++++|.+.+++|.+..+.. ++. ..|+++.|+..|+++ +.+|...|.+ ++|+..|.+|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~-~~~------~~~~~~~A~~~~~~a-------~~~~~~~g~~---~~A~~~~~~al~~ 65 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS-FMK------WKPDYDSAASEYAKA-------AVAFKNAKQL---EQAKDAYLQEAEA 65 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC-SSS------CSCCHHHHHHHHHHH-------HHHHHHTTCH---HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc-ccC------CCCCHHHHHHHHHHH-------HHHHHHcCCH---HHHHHHHHHHHHH
Confidence 4678999999999988763321 111 148899999998887 4566777666 9999999999999
Q ss_pred CCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 475 DPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 475 dP~~------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
.|.. +.+|.++|.+|..+|++++|+..|++|+++.+. ..++.+.|.+|.. |++++|+..|++|+++
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 8755 568999999999999999999999999998431 3456778889988 9999999999999998
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH
Q 005106 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (714)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e 621 (714)
.|+...... .+.+++++|.++.++|+++
T Consensus 145 ~~~~~~~~~----------------------------------------------------~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 145 FENEERLRQ----------------------------------------------------AAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp HHHTTCHHH----------------------------------------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HHhCCChhH----------------------------------------------------HHHHHHHHHHHHHHcCCHH
Confidence 775411000 1234566666666677777
Q ss_pred HHHHHHHHHHHhCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 622 AAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 622 eAl~~~~~Al~l~P~~~------ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+|+..|++|+++.|++. .++.++|.+++.+|++++|+..|++++ ++|+|
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 77777777766665543 356666666666677777777777776 66654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=175.15 Aligned_cols=200 Identities=12% Similarity=0.064 Sum_probs=144.5
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH-------------
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYR-------ASSLMTKQNVEAALAEINRILGFKLA-LECLEL------------- 517 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~r-------g~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~------------- 517 (714)
.+.++|...|.+|++++|+..++|.+| +.++..++++.+++..+++++++.|+ ...++.
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 334666777777777777777777777 67777777777777777777776664 222222
Q ss_pred --------HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccch
Q 005106 518 --------RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (714)
Q Consensus 518 --------R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~a 589 (714)
.+.++..+|+|++|.+.|+.++..+|++ . +...++.+....++|++|
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~------~-~~~~~a~l~~~~~r~~dA------------------ 154 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH------L-VAWMKAVVYGAAERWTDV------------------ 154 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH------H-HHHHHHHHHHHTTCHHHH------------------
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch------H-HHHHHHHHHHHcCCHHHH------------------
Confidence 4456777777777777777777777765 3 445555566666677766
Q ss_pred HHHHHHHHHhC-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 590 LSVIYQMLESD-AP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--AS-DHERLVYEGWILYDTSHCEEGLRKAEES 664 (714)
Q Consensus 590 l~~~~qaL~l~-P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~--P~-~~ea~~~~G~~ly~~G~~eeAl~~ye~A 664 (714)
+..+++++... |. ...+++++|.++..+|++++|++.|++|+.-. |. ..++++++|++|..+|+.+||...|+++
T Consensus 155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444332 11 14589999999999999999999999999655 65 7789999999999999999999999999
Q ss_pred HhcCCCHH-HHHHHHHHhhccCCCC
Q 005106 665 IQMKRSFE-AFFLKAYALADSSQDS 688 (714)
Q Consensus 665 i~i~~~~~-a~~~~~~~~~~~~~~~ 688 (714)
++++|+ . ++ -+|.|.+.=|
T Consensus 235 ~a~~P~-~~~~----~aL~~~~~~~ 254 (282)
T 4f3v_A 235 QTTHPE-PKVA----AALKDPSYRL 254 (282)
T ss_dssp HHHSCC-HHHH----HHHHCTTCCC
T ss_pred HhcCCc-HHHH----HHHhCCCCCC
Confidence 999999 5 33 3456665543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-17 Score=156.17 Aligned_cols=68 Identities=10% Similarity=-0.097 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|++|+++.|+.+
T Consensus 71 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 71 DYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 45666666666666666666666666666666666666666666666666666666666666666654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-17 Score=170.89 Aligned_cols=183 Identities=11% Similarity=0.022 Sum_probs=145.6
Q ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 428 KGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG 507 (714)
Q Consensus 428 ~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~ 507 (714)
.|++.+|.+.+.++.+..+.. ++. .-+++++|+..|++| |.+|..+|++++|+..|.++++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---~~~--~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~ 64 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---FMK--WKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAE 64 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---SSS--CSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---ccC--CCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 577889999999888876641 111 014558888888776 6789999999999999999999
Q ss_pred cCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhc
Q 005106 508 FKLA-------LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (714)
Q Consensus 508 l~P~-------~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~ 580 (714)
+.+. ...+.+.|.+|..+|++++|+..|++|+++.+... +..
T Consensus 65 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--------------------~~~----------- 113 (307)
T 2ifu_A 65 AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--------------------TPD----------- 113 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--------------------CHH-----------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--------------------CHH-----------
Confidence 8652 23567788999999999999999999999855431 000
Q ss_pred cccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCH
Q 005106 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHC 654 (714)
Q Consensus 581 ~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~ 654 (714)
..+.+++++|.++.. |++++|+..|++|+++.|.. +.++.++|.++..+|++
T Consensus 114 ---------------------~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 171 (307)
T 2ifu_A 114 ---------------------TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF 171 (307)
T ss_dssp ---------------------HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH
Confidence 013467889999999 99999999999999999875 68899999999999999
Q ss_pred HHHHHHHHHHHhcCCCH-------HHHHHHHHHhh
Q 005106 655 EEGLRKAEESIQMKRSF-------EAFFLKAYALA 682 (714)
Q Consensus 655 eeAl~~ye~Ai~i~~~~-------~a~~~~~~~~~ 682 (714)
++|+..|++|+.+.|.. .+++..|.++.
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 99999999999986532 26777777664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=153.88 Aligned_cols=155 Identities=14% Similarity=-0.055 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---- 458 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~---- 458 (714)
....+|..+...|++++|+..|++|++.+ +..++.++|.++...|++++|+..++++++..| .+..+...+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 35678999999999999999999999884 566789999999999999999999999999999 66655444322
Q ss_pred -CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 459 -CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 459 -~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
....+|+..|++|++++|+++.+++++|.++..+|++++|+..|+++++++|+ +..+.+++.++..+|+.++|+..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 12256899999999999999999999999999999999999999999999996 44788899999999999999999
Q ss_pred HHHHHh
Q 005106 535 VQAILT 540 (714)
Q Consensus 535 ~~~al~ 540 (714)
|++++.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=180.13 Aligned_cols=174 Identities=15% Similarity=0.150 Sum_probs=151.7
Q ss_pred HHHhcCC-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 488 SLMTKQN-VEAALAEINRILGFKLA-LECLELRFCFFLALED----------YQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 488 ~l~~l~r-~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd----------~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
.++..|. .++|+..++++|+++|+ +.+|+.|+.++..+|+ +++|+..++++++.+|++.. +.
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~------aW 110 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG------TW 110 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------HH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH------HH
Confidence 3445554 56889999999999996 8999999999999998 99999999999999999954 33
Q ss_pred HHHHHHHHhhh--hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 005106 556 QLHMLVREHID--NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN-CPEAAMRSLQLARQ 632 (714)
Q Consensus 556 ~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg-~~eeAl~~~~~Al~ 632 (714)
+.++-+..... +|++ ++.+++++|++||.+..+|++||.++.++| .+++|++.+.++++
T Consensus 111 ~hR~w~l~~l~~~~~~~------------------el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWAR------------------ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp HHHHHHHHTCSSCCHHH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcccccHHH------------------HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 33333333333 3344 489999999999999999999999999999 99999999999999
Q ss_pred hCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 633 HAASDHERLVYEGWILYDT--------------SHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 633 l~P~~~ea~~~~G~~ly~~--------------G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
.+|+|..|++++|.++..+ +.+++|++.+++||.++|+++ ||+.+++++....
T Consensus 173 ~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 9999999999999999986 668999999999999999999 9999999998754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-16 Score=153.04 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=101.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 467 d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.|+++++++|+++.+|+++|.++.++|++++|+..|+++++++|+ +..|.++|.++..+|++++|+..|+++++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 478899999999999999999999999999999999999999995 8888999999999999999998888887777775
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 005106 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (714)
+.+|+++|.++.++|++++|+.
T Consensus 104 ----------------------------------------------------------~~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 104 ----------------------------------------------------------YTPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHHH
Confidence 4678889999999999999999
Q ss_pred HHHHHHHhCCCCh
Q 005106 626 SLQLARQHAASDH 638 (714)
Q Consensus 626 ~~~~Al~l~P~~~ 638 (714)
.|++|+++.|+..
T Consensus 126 ~~~~al~l~~~~~ 138 (151)
T 3gyz_A 126 CFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCHH
Confidence 9999999999875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-18 Score=183.20 Aligned_cols=177 Identities=15% Similarity=0.094 Sum_probs=151.8
Q ss_pred hHHHHHHHH----HHhcCCCChHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 005106 462 DKRWEDLDK----ATALDPTLSYPYMYRASSLM------------TKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524 (714)
Q Consensus 462 ~eAl~d~~k----Ai~LdP~~~~ay~~rg~~l~------------~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~ 524 (714)
++|+..+.+ ++.++|++ +|.++|.... .++++++|+..|+++++.+|+ +..+.++|.++..
T Consensus 82 e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~ 159 (336)
T 1p5q_A 82 ERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK 159 (336)
T ss_dssp HHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 556666666 66677765 5666665543 788999999999999999996 7888999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh
Q 005106 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~ 604 (714)
+|++++|+..|++|++++|++..+. .++..+++|..+
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~-------------------------------------------~~~~~~~~~~~~ 196 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFS-------------------------------------------NEEAQKAQALRL 196 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCC-------------------------------------------SHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccCC-------------------------------------------hHHHHHHHHHHH
Confidence 9999999999999999999973210 133455566678
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
.+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|++|++++|++. ++++.|.++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999988 89998887754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=165.57 Aligned_cols=220 Identities=15% Similarity=0.095 Sum_probs=163.0
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
++++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++|++++|+ +.+++++|.++..+|++++|+..|+++
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3377778888999999999999999999999999999999999999999996 888999999999999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg 618 (714)
++++|++....+......+ .......| ........|.++.....++.++ .|
T Consensus 99 l~l~p~~~~~~~~~~~~~~---~~~~~~~~------------------------~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 99 YSLAKEQRLNFGDDIPSAL---RIAKKKRW------------------------NSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HHHHHHTTCCCCSHHHHHH---HHHHHHHH------------------------HHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HHhCccchhhHHHHHHHHH---HHHHHHHH------------------------HHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 9999987543332111111 01111111 1222345677777777777765 79
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCHH--HHHHHHHHhhccCCCCC------
Q 005106 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEESIQMKRSFE--AFFLKAYALADSSQDSS------ 689 (714)
Q Consensus 619 ~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~-G~~eeAl~~ye~Ai~i~~~~~--a~~~~~~~~~~~~~~~~------ 689 (714)
++++|++.+++|++++|++......++-++... +++++|...|+++.+-.+..+ .+|.=.+. .+---||-
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~-~~~~~dPv~~~~gh 228 (281)
T 2c2l_A 150 ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKIS-FELMREPCITPSGI 228 (281)
T ss_dssp HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTT-CSBCSSEEECSSCC
T ss_pred HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCc-CCHhcCCeECCCCC
Confidence 999999999999999999998888888888777 789999999999988544433 33322221 11222333
Q ss_pred --chhhHHHHHHHhhc-CCCCcc
Q 005106 690 --CSSTVVSLLEDALK-CPSDRL 709 (714)
Q Consensus 690 --~~~~~~~~~~~~~~-~~~~~~ 709 (714)
|.+.+...|++--. ||..+-
T Consensus 229 ~f~~~~i~~~~~~~~~~cP~~~~ 251 (281)
T 2c2l_A 229 TYDRKDIEEHLQRVGHFNPVTRS 251 (281)
T ss_dssp EEETTHHHHHHHHTCSSCTTTCC
T ss_pred EECHHHHHHHHHHCCCCCcCCCC
Confidence 24566677766433 998763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-15 Score=145.92 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHH
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~ 559 (714)
..++++|.++...|++++|+..|++++ +|++..+.++|.++..+|++++|+..|+++++++|++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------- 70 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-------------- 70 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--------------
Confidence 457889999999999999999999996 7788888899999999999999998888887777765
Q ss_pred HHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-
Q 005106 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH- 638 (714)
Q Consensus 560 ~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~- 638 (714)
+.+|+++|.++..+|++++|+..+++|+++.|++.
T Consensus 71 --------------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 106 (213)
T 1hh8_A 71 --------------------------------------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 106 (213)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSE
T ss_pred --------------------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccH
Confidence 34577888888899999999999999999888777
Q ss_pred ---------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 005106 639 ---------------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA 682 (714)
Q Consensus 639 ---------------ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~ 682 (714)
.+++++|.+++.+|++++|+..|++|+++.|+.. +...+++...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 107 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp EECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 9999999999999999999999999999999876 5555555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-15 Score=170.90 Aligned_cols=159 Identities=9% Similarity=-0.067 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 429 GHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504 (714)
Q Consensus 429 G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~k 504 (714)
|++++|++.|+++++.+|+++.+|.++|.. +++++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444444444444444444444444444321 3446777778889999999999999999999999999999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccc
Q 005106 505 ILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS 583 (714)
Q Consensus 505 AL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~ 583 (714)
+++++|+ +..+.++|.++..+|++++|+..|+++++++|++
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------------------- 124 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-------------------------------------- 124 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------------------
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------------------
Confidence 9999996 8888999999999999999999888888888776
Q ss_pred ccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005106 584 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL---NCPEAAMRSLQLARQHAASDHERLVYEG 645 (714)
Q Consensus 584 ~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l---g~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (714)
+.+++++|.++..+ |++++|+..++++++.+|++..++..++
T Consensus 125 --------------------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 125 --------------------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp --------------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred --------------------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 24566778888888 8888888888888888888888887776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-17 Score=184.81 Aligned_cols=188 Identities=13% Similarity=0.071 Sum_probs=147.5
Q ss_pred cchHHHHHHHHH----HHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHH
Q 005106 397 KEYDEAEHLFEA----AVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT 472 (714)
Q Consensus 397 g~y~eA~~~f~~----AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi 472 (714)
..+++|+..+++ +|.++|.++|...|... ..+.|+....|.. ....+++|+..|++++
T Consensus 200 ~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~----------------~~ip~~~~l~y~~--~l~~~~~A~~~~~~~~ 261 (457)
T 1kt0_A 200 IGIDKALEKMQREEQCILYLGPRYGFGEAGKPK----------------FGIEPNAELIYEV--TLKSFEKAKESWEMDT 261 (457)
T ss_dssp HHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGG----------------GTBCTTCCEEEEE--EEEEEECCCCGGGSCH
T ss_pred hHHHHHHHhCCCCCEEEEEECcccccCCCCCcc----------------cCCCCCCEEEEEh--hhhhcccCcchhhcCH
Confidence 367888887777 77777776554433211 1122221111100 1123378888999999
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----------------LECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----------------~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
+.+|+.+.+|.++|.++..+|++++|+..|++||+++|+ ..++.++|.+|..+|++++|+.+|+
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999999999999999996 3778889999999999999998888
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005106 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (714)
Q Consensus 537 ~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~ 616 (714)
+|++++|++ +.+|+++|.++..
T Consensus 342 ~al~~~p~~----------------------------------------------------------~~a~~~~g~a~~~ 363 (457)
T 1kt0_A 342 KALGLDSAN----------------------------------------------------------EKGLYRRGEAQLL 363 (457)
T ss_dssp HHHHHSTTC----------------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHhcCCcc----------------------------------------------------------HHHHHHHHHHHHH
Confidence 888877775 4568899999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 617 lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
+|++++|+.+|++|++++|++.+++.++|.++..+|++++|...
T Consensus 364 ~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 364 MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998864
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.7e-15 Score=146.38 Aligned_cols=186 Identities=10% Similarity=-0.079 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh
Q 005106 400 DEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLS 479 (714)
Q Consensus 400 ~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~ 479 (714)
.+|+.+|++|.+.+++.+++.+|.++...|++++|+.+|.++++ ++++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------------------------------~g~~ 50 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAA--------------------------------QGDG 50 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------------TTCH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--------------------------------cCCH
Confidence 36888999999999999999999999888887777777655443 2456
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhh
Q 005106 480 YPYMYRASSLMTKQ----NVEAALAEINRILGFKL-ALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEG 550 (714)
Q Consensus 480 ~ay~~rg~~l~~l~----r~~eAl~~~~kAL~l~P-~~~~~~~R~~~~~~----lgd~e~Al~d~~~al~L~P~~~~~~~ 550 (714)
.+++++|.+|.. + ++++|+..|++|++ + ++.+++++|.+|.. .+|+++|+..|+++++.+|..
T Consensus 51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~----- 122 (212)
T 3rjv_A 51 DALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD----- 122 (212)
T ss_dssp HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-----
T ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-----
Confidence 777788888777 6 78888888888874 4 47777788888776 778888888888877776641
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHH
Q 005106 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRS 626 (714)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~ 626 (714)
+++.+++++|.++.. .+++++|+..
T Consensus 123 ---------------------------------------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 123 ---------------------------------------------------AAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred ---------------------------------------------------chHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 124456777777777 7788889999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCCCHHHHHHH
Q 005106 627 LQLARQHAASDHERLVYEGWILYDT-S-----HCEEGLRKAEESIQMKRSFEAFFLK 677 (714)
Q Consensus 627 ~~~Al~l~P~~~ea~~~~G~~ly~~-G-----~~eeAl~~ye~Ai~i~~~~~a~~~~ 677 (714)
|++|+++ |.++++++++|.++... | ++++|+..|++|++.........+.
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~ 207 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD 207 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999888 77888899999988764 3 8899999999998886655554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=142.42 Aligned_cols=122 Identities=12% Similarity=-0.035 Sum_probs=101.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 467 d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.|++|++++|+++.+++++|.++...|++++|+..|+++++++|+ +..|+++|.++..+|++++|+..|+++++++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 478899999999999999999999999999999999999999885 7888888888888888888888877777777765
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 005106 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (714)
+.+++++|.++..+|++++|+.
T Consensus 89 ----------------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 89 ----------------------------------------------------------PRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp ----------------------------------------------------------THHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------------------------------------chHHHHHHHHHHHcCCHHHHHH
Confidence 3457788888888888888888
Q ss_pred HHHHHHHhCCCChhHHHHHHH
Q 005106 626 SLQLARQHAASDHERLVYEGW 646 (714)
Q Consensus 626 ~~~~Al~l~P~~~ea~~~~G~ 646 (714)
.|++|++++|++++....+..
T Consensus 111 ~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 111 GLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp HHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHCcCCCcchHHHHH
Confidence 888888888888776544433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-16 Score=148.85 Aligned_cols=114 Identities=16% Similarity=0.150 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------------LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------------~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
+..+.++|+++..+|+|++|+..|++||+++|+ ..+|.+||.++..+|+|++|+.+|++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l---- 86 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY---- 86 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 467889999999999999999999999999997 128899999999999999999999999876
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH----HHHHHHHHHcCChH
Q 005106 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY----FRQSLLLLRLNCPE 621 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~----~~~g~~L~~lg~~e 621 (714)
|+++++++|.++.+| +|+|.+|..+|+++
T Consensus 87 -----------------------------------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~e 119 (159)
T 2hr2_A 87 -----------------------------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGA 119 (159)
T ss_dssp -----------------------------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------------------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHH
Confidence 366677788888888 99999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHH
Q 005106 622 AAMRSLQLARQHAASDHERLVY 643 (714)
Q Consensus 622 eAl~~~~~Al~l~P~~~ea~~~ 643 (714)
||+.+|++|++++|+++.+.--
T Consensus 120 EAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 120 EAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHHHHHHHHHHHHCCSCCTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHH
Confidence 9999999999999998876443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=156.91 Aligned_cols=158 Identities=15% Similarity=-0.049 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh---
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~--~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~--- 457 (714)
..+++.+|..+...|++++|+..|++|++.+ +..++.++|.++..+|++++|+..+++++..+|+....+...+.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 4566889999999999999999999999985 46688899999999999999999999999999976555444432
Q ss_pred -cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 005106 458 -YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALC 533 (714)
Q Consensus 458 -~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~~R~~~~~~lgd~e~Al~ 533 (714)
-+..++|+..|++|++++|+++.+++++|.+|...|++++|+..|+++++.+|+ ..++.+++.++..+|+.++|+.
T Consensus 197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 123488999999999999999999999999999999999999999999999996 4567788999999999999999
Q ss_pred HHHHHHh
Q 005106 534 DVQAILT 540 (714)
Q Consensus 534 d~~~al~ 540 (714)
.|++++.
T Consensus 277 ~~r~al~ 283 (287)
T 3qou_A 277 XYRRQLY 283 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-13 Score=165.81 Aligned_cols=241 Identities=13% Similarity=-0.012 Sum_probs=133.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHH-HHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISSVTPL-GWMYQ-ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~p~~-~~ay~-~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eA 498 (714)
.|.++...|.+++|+..|+++- .+.. ...+. ..+.+ ++|++.+++ .+.+..|.++|.++...|+++||
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~--~~~~A~~VLie~i~nl---drAiE~Aer-----vn~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD--VNTSAVQVLIEHIGNL---DRAYEFAER-----CNEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHHHHHhhH---HHHHHHHHh-----cCCHHHHHHHHHHHHhCCCHHHH
Confidence 4555555566666655555542 1111 12222 22222 333333332 24455556666666666666666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH---HHHHHHhhhhhhHHHHHH
Q 005106 499 LAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL---HMLVREHIDNWTIADCWL 575 (714)
Q Consensus 499 l~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~---~~~l~~~~~~~~~A~~~~ 575 (714)
+..|.|| -+++.+...+.++..+|+|++|++.|..|++.+|+......-+.++.. ...+...++....+ .|.
T Consensus 1125 IdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~a-d~~ 1199 (1630)
T 1xi4_A 1125 IDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNA-HIQ 1199 (1630)
T ss_pred HHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHH-HHH
Confidence 6666554 234555555555566666666666666655555442100000000000 01111112222222 233
Q ss_pred hhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------------------
Q 005106 576 QLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------------------- 635 (714)
Q Consensus 576 ~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P------------------- 635 (714)
+++++..+.++++ |...|.+| ..|.++|.+|.++|++++|++.+++|...++
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHH
Confidence 4555555556555 55566664 4677777777777777777777777755544
Q ss_pred ------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhcc
Q 005106 636 ------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADS 684 (714)
Q Consensus 636 ------~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~ 684 (714)
.+++-+..++..+...|+|+||+..+|+++.++|.-. .|--.|.+++-.
T Consensus 1272 cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1272 CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 2556667788889999999999999999999998887 565667766554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-14 Score=154.58 Aligned_cols=226 Identities=12% Similarity=0.010 Sum_probs=146.0
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~ 496 (714)
.++.+|..+...|++++|+..|.+|+.+.+..+. +|..+.+|.++|.++..+|+++
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------~~~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD------------------------DIEKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC------------------------HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC------------------------hHHHHHHHHHHHHHHHHcCCcH
Confidence 4556788888888888888888887776421100 1122345666666666666666
Q ss_pred HHHHHHHHHHhcCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhh
Q 005106 497 AALAEINRILGFKLA--------LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 568 (714)
Q Consensus 497 eAl~~~~kAL~l~P~--------~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~ 568 (714)
+|+..+++|+++.+. ..++.+.|.++..+|++++|+..|++|+++.+....-.....+...++.+....+++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 666666666665321 223445666666666666666666666665433211112233444444444444444
Q ss_pred hHHHHHHhhhhccccccccchHHHHHHHHH-----hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCh
Q 005106 569 TIADCWLQLYDRWSSVDDIGSLSVIYQMLE-----SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-----ASDH 638 (714)
Q Consensus 569 ~~A~~~~~l~~~~~~~~d~~al~~~~qaL~-----l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-----P~~~ 638 (714)
++| +..++++++ .+|..+.+++++|.++.++|++++|+..+++|+++. |...
T Consensus 239 ~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 239 QMA------------------VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHH------------------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHH------------------HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 444 555666666 678888899999999999999999999999999994 4455
Q ss_pred hHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccC
Q 005106 639 ERLVYEGWILYDTSH---CEEGLRKAEESIQMKRSFE-AFFLKAYALADSS 685 (714)
Q Consensus 639 ea~~~~G~~ly~~G~---~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~ 685 (714)
..+..+|.++...|+ +++|+..+++. ...|... .+...|..+....
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 567788888888899 99999888873 2333333 6666776666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=140.12 Aligned_cols=127 Identities=12% Similarity=-0.073 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 466 ~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
..|.++++++|++..+++++|.++...|++++|+..|+++++++|+ +..|..+|.++..+|++++|+..|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3578888899999999999999999999999999999999998885 788888888888888888888877777777776
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl 624 (714)
+ +.+++++|.++..+|++++|+
T Consensus 85 ~----------------------------------------------------------~~~~~~lg~~~~~~g~~~~A~ 106 (142)
T 2xcb_A 85 E----------------------------------------------------------PRFPFHAAECHLQLGDLDGAE 106 (142)
T ss_dssp C----------------------------------------------------------THHHHHHHHHHHHTTCHHHHH
T ss_pred C----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHH
Confidence 5 345778888888888888888
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 625 RSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 625 ~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
..|+++++++|++++....+..+.-.
T Consensus 107 ~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 107 SGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 88888888888888776655555433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-15 Score=137.81 Aligned_cols=115 Identities=11% Similarity=-0.033 Sum_probs=103.2
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
..|+++++++|+ +..++.+|.++...|++++|+..|+++++++|++
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------------- 54 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--------------------------------- 54 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---------------------------------
Confidence 468889999985 7778889999999999999988877777777665
Q ss_pred hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 005106 579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 579 ~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
+.+|+++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+|++++|+
T Consensus 55 -------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~ 109 (148)
T 2vgx_A 55 -------------------------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE 109 (148)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 4668899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHH
Q 005106 659 RKAEESIQMKRSFE 672 (714)
Q Consensus 659 ~~ye~Ai~i~~~~~ 672 (714)
..|++|++++|+..
T Consensus 110 ~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 110 SGLFLAQELIANXP 123 (148)
T ss_dssp HHHHHHHHHHTTCG
T ss_pred HHHHHHHHHCcCCC
Confidence 99999999988744
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-17 Score=182.78 Aligned_cols=150 Identities=12% Similarity=0.024 Sum_probs=128.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhh
Q 005106 491 TKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (714)
Q Consensus 491 ~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~ 569 (714)
.++++++|+..|+++++.+|+ ...+.++|.++..+|+|++|+..|++|++++|++..+..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------------- 306 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE------------------- 306 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-------------------
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh-------------------
Confidence 678899999999999999996 788899999999999999999999999999999843110
Q ss_pred HHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005106 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (714)
Q Consensus 570 ~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly 649 (714)
+...+++|....+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++
T Consensus 307 ------------------------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~ 362 (457)
T 1kt0_A 307 ------------------------KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL 362 (457)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 11123344556889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 650 DTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 650 ~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
.+|++++|+..|++|++++|++. ++.++|.++..
T Consensus 363 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 363 LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998 99998887653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-15 Score=142.37 Aligned_cols=107 Identities=18% Similarity=0.094 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchh--------------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--------------SIAGLARLGYIKGHKLWAYEKLNSVISSVTP 447 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~--------------a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~ 447 (714)
.+..+.++|..++..|+|++|+..|++||+++|.+ +|.++|.++..+|++++|+.+|++||++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 45566889999999999999999999999997662 7888888888888888888888766653
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPY----MYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay----~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
|+++++++|+++.+| +++|.++..+|+++||+.+|++||+++|+
T Consensus 87 --------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 87 --------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp --------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 677888899998888 88888888888888888888888888873
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-14 Score=124.43 Aligned_cols=133 Identities=13% Similarity=0.135 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~ 558 (714)
.+|+++|.++...|++++|+..|+++++.+|+ +..+...+.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------------- 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-------------
Confidence 57888888999999999999999999888885 6777778888888888888888777777766654
Q ss_pred HHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005106 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 559 ~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
+.+++++|.++...|++++|+..++++++..|++.
T Consensus 69 ---------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 69 ---------------------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ---------------------------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 34567788889999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
.++..+|.+++.+|++++|+..+++++.++|+
T Consensus 104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999886
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-15 Score=154.70 Aligned_cols=205 Identities=10% Similarity=0.006 Sum_probs=123.6
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhH-------HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGL-------ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS 456 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~l-------g~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg 456 (714)
.+..|.-+ .-+++.+|.+.|.+|++++| .++|.++ +.++...++..+++..+.+++.+
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l------------ 76 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI------------ 76 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC------------
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC------------
Confidence 34455544 46777777777777777754 3445555 44555555555555555555554
Q ss_pred hcCChhHHHHHHHHHHhcCCCChHHHHH---------------------HHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 457 LYCEGDKRWEDLDKATALDPTLSYPYMY---------------------RASSLMTKQNVEAALAEINRILGFKLALECL 515 (714)
Q Consensus 457 ~~~~~~eAl~d~~kAi~LdP~~~~ay~~---------------------rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~ 515 (714)
.|+...++++ .|.+|.+.|+|++|.+.|+.++...|+....
T Consensus 77 ------------------~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~ 138 (282)
T 4f3v_A 77 ------------------SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVA 138 (282)
T ss_dssp ------------------CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHH
T ss_pred ------------------ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHH
Confidence 4444433333 4555666666666666666666555542255
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHH
Q 005106 516 ELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 595 (714)
Q Consensus 516 ~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~q 595 (714)
+.++.++.+.|||++|+..|+++.+..+++. ...+...++.+...++++++| +..|++
T Consensus 139 ~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~----~~~a~~~LG~al~~LG~~~eA------------------l~~l~~ 196 (282)
T 4f3v_A 139 WMKAVVYGAAERWTDVIDQVKSAGKWPDKFL----AGAAGVAHGVAAANLALFTEA------------------ERRLTE 196 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH----HHHHHHHHHHHHHHTTCHHHH------------------HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhccCCccc----HHHHHHHHHHHHHHCCCHHHH------------------HHHHHH
Confidence 5566666666666666666665544422210 012344444444445555555 455566
Q ss_pred HHHhC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 005106 596 MLESD--AP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 644 (714)
Q Consensus 596 aL~l~--P~-~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~ 644 (714)
++... |. .+++++++|.+|.++|+.++|...|+++++.+|+ +.+...+
T Consensus 197 a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 197 ANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 65433 44 5678999999999999999999999999999999 7765443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=140.69 Aligned_cols=134 Identities=14% Similarity=0.149 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCh
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~ 461 (714)
+.+.++++|..+...|++++|+..|++|+.. ...++.++|.++..+|++++|+.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~------------------------- 58 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEK------------------------- 58 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHH-------------------------
Confidence 4667788999999999999999999998744 45577778887777777666655
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H----------------HHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L----------------ECLELRFCFFLA 524 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~----------------~~~~~R~~~~~~ 524 (714)
.|++|++++|+++.+|.++|.++..+|++++|+..|++++++.|+ . ..++++|.++..
T Consensus 59 -----~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 59 -----AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp -----HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 456666677777777778888888888888888888888876663 3 667777888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCch
Q 005106 525 LEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~P~~~ 546 (714)
+|++++|+..|+++++++|++.
T Consensus 134 ~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCHHHHHHHHHHHHTTCCSGG
T ss_pred ccCHHHHHHHHHHHHHcCcccc
Confidence 8888888888888888888763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=143.90 Aligned_cols=218 Identities=9% Similarity=-0.088 Sum_probs=164.3
Q ss_pred hHHHHHHHHHHh-------cC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATA-------LD-PTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--------LA-LECLELRFCFFLA 524 (714)
Q Consensus 462 ~eAl~d~~kAi~-------Ld-P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~--------P~-~~~~~~R~~~~~~ 524 (714)
++|+..|++|++ .+ |..+.+|.++|.++..+|++++|+..|++++++. |. ...+.++|.++..
T Consensus 18 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 555555555555 24 7889999999999999999999999999999883 43 5667889999999
Q ss_pred cCCHHHHHHHHHHHHhhC-----CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHh
Q 005106 525 LEDYQAALCDVQAILTLS-----PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (714)
Q Consensus 525 lgd~e~Al~d~~~al~L~-----P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l 599 (714)
+|++++|+..|++++++. |++. ....+...++.+....+++++| +..+++++++
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~ 156 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHP---DVAKQLNNLALLCQNQGKAEEV------------------EYYYRRALEI 156 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHTTTCHHHH------------------HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHH
Confidence 999999999999999983 3221 1133455555555555566655 7889999999
Q ss_pred --------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHh---------CCCChhHHHHHHHHHHhcCCHHH------
Q 005106 600 --------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH---------AASDHERLVYEGWILYDTSHCEE------ 656 (714)
Q Consensus 600 --------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l---------~P~~~ea~~~~G~~ly~~G~~ee------ 656 (714)
+|..+.+++++|.++..+|++++|+..+++++++ .|.....+...|......+...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (283)
T 3edt_B 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236 (283)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 8888999999999999999999999999999998 67778888888888777655444
Q ss_pred HHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhcC
Q 005106 657 GLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (714)
Q Consensus 657 Al~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
+...+++.....|... +++..|.++.... .-..-+.+++.|++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQG----KLEAAHTLEDCASRN 281 (283)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHh
Confidence 3433443333445555 8888888887754 345567777887764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-15 Score=135.75 Aligned_cols=115 Identities=10% Similarity=-0.044 Sum_probs=100.7
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 005106 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (714)
Q Consensus 500 ~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~ 578 (714)
..|+++++++|+ ...++.+|..+...|++++|+..|+++++++|++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------------- 51 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--------------------------------- 51 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------------------------------
Confidence 577888888885 7778888999999999999988887777777765
Q ss_pred hccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHH
Q 005106 579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 579 ~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
+.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+
T Consensus 52 -------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 106 (142)
T 2xcb_A 52 -------------------------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAE 106 (142)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 4568889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHH
Q 005106 659 RKAEESIQMKRSFE 672 (714)
Q Consensus 659 ~~ye~Ai~i~~~~~ 672 (714)
..|++++++.|+..
T Consensus 107 ~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 107 SGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999998665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-12 Score=158.39 Aligned_cols=254 Identities=9% Similarity=-0.000 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERS 456 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~------~~~ay~~rg 456 (714)
..+++++|.++...|++++|+..|.+| +...++..+|.++.+.|++++|++.+..|++..++ .|.+|.+.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence 567899999999999999999999887 77888999999999999999999999999987644 678887775
Q ss_pred hcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 457 ~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
++ + ++++|- +..+...|.+.|..+.++|+|++|+..|++| ..|...+.+|..+|++++|+..++
T Consensus 1182 rl---e-ele~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1182 RL---A-ELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CH---H-HHHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 54 5 466663 3445567889999999999999999999997 356677889999999999999999
Q ss_pred HHHhhCCCchh---hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHH
Q 005106 537 AILTLSPDYRM---FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSL 612 (714)
Q Consensus 537 ~al~L~P~~~~---~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~ 612 (714)
+|...++=... ....+.....+..........+..+-....|+. .+.++ ++..++++|.++|.+...+..+|.
T Consensus 1246 KA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~---~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1246 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD---RGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred HhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 99554331100 000000000000000111222222222334433 34454 688999999999999999988888
Q ss_pred HHHH--cCChHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHhcCCHHHHH
Q 005106 613 LLLR--LNCPEAAMRSLQLARQHAA-----SDHERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 613 ~L~~--lg~~eeAl~~~~~Al~l~P-----~~~ea~~~~G~~ly~~G~~eeAl 658 (714)
++.+ -++..|+++.|...+++.| .+++.+.....++..-|+++.|+
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 8776 7788899999999999988 88888888888888899999999
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.9e-14 Score=129.61 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
+..|..+|.++...|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------------ 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------
Confidence 467889999999999999999999999999995 7888889999999999999988888888777765
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
+.+++++|.++..+|++++|+..++++++++|++
T Consensus 81 ----------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 81 ----------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 3467889999999999999999999999999999
Q ss_pred hhHHHHHHHH--HHhcCCHHHHHHHHHHHHhcC
Q 005106 638 HERLVYEGWI--LYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 638 ~ea~~~~G~~--ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
..++.+++.+ +..+|++++|+..++++..+-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 115 KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9999666555 889999999999999887653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-14 Score=127.31 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=83.2
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
|..+..|.++|.++...|++++|+..|+++|+++|+ +..+.++|.++..+|++++|+.+|+++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--------- 71 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------
Confidence 445667777777777777777777777777777774 6777777777777777777777766666666654
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005106 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (714)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 634 (714)
+.+|+++|.++..+|++++|+..|+++++++
T Consensus 72 -------------------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 -------------------------------------------------VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 3446667777777777777777777777777
Q ss_pred ------CCChhHHHHHHHHHH
Q 005106 635 ------ASDHERLVYEGWILY 649 (714)
Q Consensus 635 ------P~~~ea~~~~G~~ly 649 (714)
|++.+++..++.+..
T Consensus 103 p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 103 AEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTTTHHHHHHHHHHHHH
T ss_pred cccCCchhHHHHHHHHHHHHH
Confidence 777777666666543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-14 Score=133.52 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=99.8
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 005106 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (714)
Q Consensus 474 LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~ 552 (714)
-+|..+.+|+.+|.++...|++++|+..|+++|+++|+ +..+.++|.+|..+|++++|+.+|+++++++|++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------- 78 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY------- 78 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------
Confidence 45667788889999999999999999999999999985 7888888888999999888888887777777765
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005106 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (714)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (714)
+.+|+++|.++..+|++++|+..|+++++
T Consensus 79 ---------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 79 ---------------------------------------------------SKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34578888899999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHh
Q 005106 633 HAASDHERLVYEGWILYD 650 (714)
Q Consensus 633 l~P~~~ea~~~~G~~ly~ 650 (714)
++|++.++++++|+....
T Consensus 108 ~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 108 AEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHSSSCCHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHH
Confidence 999999888888876543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=8.7e-15 Score=143.20 Aligned_cols=168 Identities=10% Similarity=0.079 Sum_probs=113.7
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H--------------
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L-------------- 512 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~-------------- 512 (714)
.++.....|.+ ++|.+.++...+..|..+..+.++|.++...|++++|+..|++++++.|+ +
T Consensus 10 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 10 HSSGRENLYFQ---GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred hhhhhhhhhhc---cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 34444444444 55555555566666667778888899999999999999999999988874 4
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchH
Q 005106 513 --ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (714)
Q Consensus 513 --~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al 590 (714)
.++.++|.++..+|++++|+.+|+++++++|++
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------------------------------------------- 121 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN--------------------------------------------- 121 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---------------------------------------------
Confidence 667778888888888888888777777776665
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
+.+++++|.++..+|++++|+..|++|++++|++.+++.++|.++..+|+.+++... .
T Consensus 122 -------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~---------~ 179 (198)
T 2fbn_A 122 -------------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKL---------T 179 (198)
T ss_dssp -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred -------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHH---------H
Confidence 456788999999999999999999999999999999999999999998887776622 2
Q ss_pred HHHHHHHHHHhhccC
Q 005106 671 FEAFFLKAYALADSS 685 (714)
Q Consensus 671 ~~a~~~~~~~~~~~~ 685 (714)
|..+|.+|-.+.|..
T Consensus 180 ~~~~f~~~~~~~~~~ 194 (198)
T 2fbn_A 180 FGGMFDKGPLYEEKK 194 (198)
T ss_dssp ---------------
T ss_pred HHHHhcccchhhccc
Confidence 445666666665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-14 Score=146.92 Aligned_cols=168 Identities=11% Similarity=0.065 Sum_probs=141.4
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
|+.+.+++.+|.++...|++++|+..|++||+++|+ +..+.++|.++..+|++++|+.+|+++++++|++. .+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~ 74 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV------KA 74 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH------HH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------HH
Confidence 778899999999999999999999999999999995 88899999999999999999999999999999984 35
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005106 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (714)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 634 (714)
...++.+....+++++| +..++++++++|+++..+........ +...+...........
T Consensus 75 ~~~lg~~~~~~g~~~~A------------------~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 133 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEA------------------IANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRI 133 (281)
T ss_dssp HHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 55566666667777777 78899999999988655544333333 3344555666777789
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 635 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 635 P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
|.+++....+|-.+ .|++++|+..|++|++++|+..
T Consensus 134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AAERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHH
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchh
Confidence 99999999998876 7999999999999999999864
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-14 Score=132.12 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 591 (714)
+..+..+|.++...|++++|+..|+++++++|++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------------------------- 44 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------------------------------------------- 44 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----------------------------------------------
Confidence 5667778888888888888888777777777665
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+.+|+++|.++.++|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|+++++++|++
T Consensus 45 ------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 45 ------------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred ------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHhhc
Q 005106 672 E-AFFLKAYALAD 683 (714)
Q Consensus 672 ~-a~~~~~~~~~~ 683 (714)
. +++.+|++.+-
T Consensus 113 ~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 113 GSDAMKRGLETTK 125 (164)
T ss_dssp CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8 99999988653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-13 Score=118.31 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=90.3
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 005106 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV 495 (714)
Q Consensus 420 ~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~ 495 (714)
.+|.++...|++++|+..+.+++...|+...++...|. .++.++|+..|+++++++|++..++.++|.++...|++
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 33444444444444444444444444433333333321 12336666667778888888888999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 496 EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 496 ~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
++|+..++++++..|+ ...+..++.++...|++++|+..|+++++++|+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999995 788888999999999999999999999999987
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-13 Score=134.67 Aligned_cols=161 Identities=13% Similarity=-0.090 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhC----CHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKG----HKLWAYEKLNSVISSVTPLGWMYQERSL 457 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G----~~~~A~~~~~~aI~~~p~~~~ay~~rg~ 457 (714)
+..+.+++|.++...+++++|+.+|++|++.+++.+++++|.+|.. | ++++|+.+|.++++ +..+.+++++|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~ 93 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLAR 93 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999988 7 99999999999976 457778887764
Q ss_pred c--------CChhHHHHHHHHHHhcCC--CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 005106 458 Y--------CEGDKRWEDLDKATALDP--TLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFL 523 (714)
Q Consensus 458 ~--------~~~~eAl~d~~kAi~LdP--~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~ 523 (714)
+ .+.++|+..|++|++..| +++.+++++|.+|.. .+++++|+..|++|+++.+++.+.+++|.+|.
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 345999999999999999 569999999999999 99999999999999998446778899999887
Q ss_pred hc-C-----CHHHHHHHHHHHHhhCCCc
Q 005106 524 AL-E-----DYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 524 ~l-g-----d~e~Al~d~~~al~L~P~~ 545 (714)
.. | |+++|+..|++|.+..+..
T Consensus 174 ~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 174 QGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 54 3 9999999999999997654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-14 Score=127.65 Aligned_cols=113 Identities=6% Similarity=0.023 Sum_probs=95.5
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
+.+.+|.++|+++...|++++|+..|++||+++|+ +.++.++|.+|..+|++++|+.+|+++++++|++...+.
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----- 80 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK----- 80 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH-----
Confidence 44678999999999999999999999999999996 888999999999999999999999999999998732110
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
.-+.+|+++|.++..+|++++|+..|++|++..|
T Consensus 81 ----------------------------------------------~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 81 ----------------------------------------------LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 0124577888888889999999999999988888
Q ss_pred CChhHH
Q 005106 636 SDHERL 641 (714)
Q Consensus 636 ~~~ea~ 641 (714)
+ ++..
T Consensus 115 ~-~~~~ 119 (127)
T 4gcn_A 115 D-PELV 119 (127)
T ss_dssp C-HHHH
T ss_pred C-HHHH
Confidence 5 4443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.50 E-value=7e-13 Score=138.03 Aligned_cols=179 Identities=9% Similarity=-0.015 Sum_probs=135.7
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE------CLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~------~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
+|+....+...+..+...|++++|+..++++++..|. .. .++..|.++...|++++|+..|++++++.++...
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4455566677788888888888888888888887664 21 1334566778888888888888888887766533
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH---HhCCCCh----hHHHHHHHHHHHcCCh
Q 005106 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML---ESDAPKG----VLYFRQSLLLLRLNCP 620 (714)
Q Consensus 548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL---~l~P~~~----~~~~~~g~~L~~lg~~ 620 (714)
..+...+....+.+....+++++| +..+++|+ +..|.+. .+++++|.++..+|++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A------------------~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKG------------------IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 333344555666666666666666 67778887 5556643 6899999999999999
Q ss_pred HHHHHHHHHHHHhCCC------ChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCH
Q 005106 621 EAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEG-LRKAEESIQMKRSF 671 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~------~~ea~~~~G~~ly~~G~~eeA-l~~ye~Ai~i~~~~ 671 (714)
++|+..+++|+++.++ -+.+++++|.++..+|++++| ...|++|+.+...+
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999764 278999999999999999999 77799999874433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=121.25 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=107.5
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 005106 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (714)
Q Consensus 474 LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~ 552 (714)
-.|....+|+++|.++...|++++|+..|+++++++|+ ...+..+|.++..+|++++|+..|+++++++|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------- 83 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF------- 83 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-------
Confidence 35777889999999999999999999999999999995 7888889999999999999988888877777765
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005106 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (714)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~ 632 (714)
+.+++++|.++..+|++++|+..++++++
T Consensus 84 ---------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 84 ---------------------------------------------------IKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34677889999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHhcCC
Q 005106 633 HAASDHERLVYEGWILYDTSH 653 (714)
Q Consensus 633 l~P~~~ea~~~~G~~ly~~G~ 653 (714)
++|++.+++..+|.++..+|+
T Consensus 113 ~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 113 LDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HCGGGTHHHHHHHHHHHHHTC
T ss_pred hCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999988875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=121.25 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=110.0
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh
Q 005106 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG 550 (714)
Q Consensus 472 i~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~ 550 (714)
.+.+|+.+.+|..+|.++...|++++|+..|+++++.+|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----- 79 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----- 79 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-----
Confidence 4567778889999999999999999999999999999995 7888889999999999999988888887777765
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005106 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (714)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 630 (714)
+.+++++|.++..+|++++|+..++++
T Consensus 80 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 80 -----------------------------------------------------SKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345778899999999999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHhcCCHH
Q 005106 631 RQHAASDHERLVYEGWILYDTSHCE 655 (714)
Q Consensus 631 l~l~P~~~ea~~~~G~~ly~~G~~e 655 (714)
++++|++..++..+|.++..+|+++
T Consensus 107 ~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 107 LELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998863
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-14 Score=129.13 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=82.7
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H-------HHHHHHH
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L-------ECLELRF 519 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~-------~~~~~R~ 519 (714)
+|.+|+..|++ ++|+..|++||+++|+++.+|.++|.+|..+|++++|+.+|++||+++|+ . .++.++|
T Consensus 14 lG~~~~~~~~~---~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 14 LGNAAYKQKDF---EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 45555555444 77788888999999999999999999999999999999999999999884 2 3567789
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 520 CFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 520 ~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.++..+|++++|+..|+++++++|+.
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 99999999999999999999999984
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.9e-14 Score=132.56 Aligned_cols=82 Identities=10% Similarity=0.118 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHhcCCH--HHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALEDY--QAALCDVQA 537 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~-~~~lgd~--e~Al~d~~~ 537 (714)
++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+ +..+..+|.+ +...|++ ++|+..|++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666663 5555555555 4455554 444444444
Q ss_pred HHhhCC
Q 005106 538 ILTLSP 543 (714)
Q Consensus 538 al~L~P 543 (714)
+++++|
T Consensus 107 al~~~p 112 (177)
T 2e2e_A 107 ALALDS 112 (177)
T ss_dssp HHHHCT
T ss_pred HHHhCC
Confidence 333333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-13 Score=129.21 Aligned_cols=126 Identities=13% Similarity=0.123 Sum_probs=91.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh
Q 005106 489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (714)
Q Consensus 489 l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~ 567 (714)
+...|++++|+..|+++++.+|+ +..+..+|.++..+|++++|+..|+++++++|++.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--------------------- 78 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA--------------------- 78 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---------------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------------
Confidence 45678899999999999999995 78888899999999999999999999999999872
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH-HHHcCCh--HHHHHHHHHHHHhCCCChhHHHHH
Q 005106 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL-LLRLNCP--EAAMRSLQLARQHAASDHERLVYE 644 (714)
Q Consensus 568 ~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~-L~~lg~~--eeAl~~~~~Al~l~P~~~ea~~~~ 644 (714)
.+++++|.+ +...|++ ++|+..++++++++|++..+++++
T Consensus 79 -------------------------------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 121 (177)
T 2e2e_A 79 -------------------------------------ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL 121 (177)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 234445555 4566666 667777777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 645 GWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 645 G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
|.+++.+|++++|+..|+++++++|+..
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 7777777777777777777777666654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.8e-15 Score=165.10 Aligned_cols=142 Identities=16% Similarity=0.162 Sum_probs=122.1
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
+.+.+|.++|.++..+|++++|+..|++||+++|+ +..+.++|.++..+|++++|+.+|++|++++|++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------- 73 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------- 73 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------
Confidence 34567888999999999999999999999999996 8888999999999999999999888888887776
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
+.+|+++|.++..+|++++|+..|++|++++|
T Consensus 74 ------------------------------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 74 ------------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKP 105 (477)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred ------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34688899999999999999999999999999
Q ss_pred CChhHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhcCCCHH-HHHH
Q 005106 636 SDHERLVYEGWI--LYDTSHCEEGLRKAE-----------ESIQMKRSFE-AFFL 676 (714)
Q Consensus 636 ~~~ea~~~~G~~--ly~~G~~eeAl~~ye-----------~Ai~i~~~~~-a~~~ 676 (714)
++.+++.++|.+ +..+|++++|++.|+ ++++++|++. +.+.
T Consensus 106 ~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 160 (477)
T 1wao_1 106 HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE 160 (477)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence 999999999999 999999999999999 9999988875 4433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=8.2e-14 Score=133.72 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC---
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV----------EAALAEINRILGFKLA-LECLELRFCFFLALE--- 526 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~----------~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg--- 526 (714)
+++|+..|++|++++|+++.+|+++|.++.+++++ ++|+..|++||+++|+ .++|+++|.+|..+|
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 39999999999999999999999999999999886 5999999999999996 899999999999885
Q ss_pred --------CHHHHHHHHHHHHhhCCCc
Q 005106 527 --------DYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 527 --------d~e~Al~d~~~al~L~P~~ 545 (714)
++++|+..|++|++++|++
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999987
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.4e-13 Score=120.89 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+.+|+++++
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 77777888999999999999999999999999999999999999999996 88899999999999999999999999999
Q ss_pred hC
Q 005106 541 LS 542 (714)
Q Consensus 541 L~ 542 (714)
++
T Consensus 101 ~~ 102 (126)
T 3upv_A 101 KD 102 (126)
T ss_dssp HH
T ss_pred hC
Confidence 99
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=128.07 Aligned_cols=113 Identities=11% Similarity=0.030 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGF------------------KLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l------------------~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
+..+.++|..+...|++++|+..|++||.+ +|. ..++.++|.+|..+|++++|+.+|++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467888888888888888888888888888 443 4555666666666666666666665555
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~ 619 (714)
+++|++ +.+|+++|.++..+|+
T Consensus 91 ~~~p~~----------------------------------------------------------~~a~~~~g~~~~~~g~ 112 (162)
T 3rkv_A 91 KREETN----------------------------------------------------------EKALFRRAKARIAAWK 112 (162)
T ss_dssp HHSTTC----------------------------------------------------------HHHHHHHHHHHHHTTC
T ss_pred hcCCcc----------------------------------------------------------hHHHHHHHHHHHHHhc
Confidence 555554 2345666666666666
Q ss_pred hHHHHHHHHHHHHhCCCCh-hHHHHHHHHHH
Q 005106 620 PEAAMRSLQLARQHAASDH-ERLVYEGWILY 649 (714)
Q Consensus 620 ~eeAl~~~~~Al~l~P~~~-ea~~~~G~~ly 649 (714)
+++|+..|++|++++|++. .+...++.+.-
T Consensus 113 ~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 113 LDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 6666666666666666666 44445554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-13 Score=119.92 Aligned_cols=121 Identities=15% Similarity=0.058 Sum_probs=95.5
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~ 551 (714)
..+|..+..|..+|.++...|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------ 76 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------ 76 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------
Confidence 467888888999999999999999999999999988886 7888888888888888888888777777776665
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
+.+|+++|.++..+|++++|+..+++|+
T Consensus 77 ----------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 77 ----------------------------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3457788888888888888888888888
Q ss_pred HhCCC-----ChhHHHHHHHHHHhc
Q 005106 632 QHAAS-----DHERLVYEGWILYDT 651 (714)
Q Consensus 632 ~l~P~-----~~ea~~~~G~~ly~~ 651 (714)
+++|+ +.++...++.+....
T Consensus 105 ~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 105 SLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHChhHHHHHHHHHHHHHHHHHHHH
Confidence 88888 666665555554443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-13 Score=121.98 Aligned_cols=80 Identities=10% Similarity=0.019 Sum_probs=66.2
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++++++++|+++.+|+++|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|+++++++|++.
T Consensus 40 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 40 FEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 33334444444678899999999999999999999999999999999999999999999999999999999999999874
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=135.19 Aligned_cols=159 Identities=10% Similarity=0.004 Sum_probs=117.6
Q ss_pred ChhHHHHHHHHHHhcCCCChH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcC
Q 005106 460 EGDKRWEDLDKATALDPTLSY------PYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALE 526 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~------ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~~~lg 526 (714)
.+++|+..|+++++..|..+. .|..+|.++...|++++|+..|++|+.+.+. ..++.+.|.+|..+|
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 337777777777776666544 2334677777777777777777777775432 124566777777777
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 005106 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~ 606 (714)
++++|+..|++|+++-.... ...|..+.+
T Consensus 170 ~~~~A~~~~~~al~~~~~~~---------------------------------------------------~~~~~~~~~ 198 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALH---------------------------------------------------DNEEFDVKV 198 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSS---------------------------------------------------CCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcc---------------------------------------------------cchhHHHHH
Confidence 77777777777765422210 112334567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTS-HCEEGLRKAEESIQMKR 669 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G-~~eeAl~~ye~Ai~i~~ 669 (714)
++++|.++.++|++++|+..+++|+++.+.. +.+++++|.+++.+| ++++|+..|++|+.+-.
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998766 889999999999999 57999999999998743
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=127.40 Aligned_cols=121 Identities=13% Similarity=0.063 Sum_probs=97.9
Q ss_pred chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 005106 414 HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ 493 (714)
Q Consensus 414 ~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~ 493 (714)
.+..+...|..++..|++++|+..|+++|.+.+.... .... .++ ....++|.++.+|.++|.++..+|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~----~~~~--~~~------~~~~~~~~~~~~~~nla~~~~~~~ 77 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL----REKP--GEP------EWVELDRKNIPLYANMSQCYLNIG 77 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH----TSCT--TSH------HHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc----cCCC--CHH------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455677888999999999999998888887321100 0000 000 013457888999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
++++|+..+++||+++|+ +.+++.+|.+|..+|++++|+.+|+++++++|++.
T Consensus 78 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 999999999999999996 89999999999999999999999999999999984
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-12 Score=120.88 Aligned_cols=134 Identities=14% Similarity=0.112 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~ 458 (714)
.....++.+|..+...|++++|+..|+++++.++ ..++.++|.++...|++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~--------------------------- 63 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY--------------------------- 63 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH---------------------------
Confidence 3455666777777777777777777777776643 33444555555555544
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHH--HHHHHHhcCCHHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL--RFCFFLALEDYQAALCDV 535 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~--R~~~~~~lgd~e~Al~d~ 535 (714)
++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ ...+.. ++..+...|++++|+..+
T Consensus 64 ---~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 64 ---GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55566677888888999999999999999999999999999999999996 666644 455588899999999999
Q ss_pred HHHHhhCCC
Q 005106 536 QAILTLSPD 544 (714)
Q Consensus 536 ~~al~L~P~ 544 (714)
.++..+-+.
T Consensus 141 ~~~~~~~~~ 149 (166)
T 1a17_A 141 EHKRSVVDS 149 (166)
T ss_dssp HHHHHHHHH
T ss_pred cchHHHhcc
Confidence 988776443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-14 Score=152.73 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=72.4
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE------------------CLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~------------------~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
|+.+..|.++|.++...|++++|+..|++||++.|+.. ++.++|.+|..+|+|++|+.+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~--- 252 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH--- 252 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 44456678888888888888888888888888887532 344455555555555555554
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 538 al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
++++|+++|.++.+|+++|.++..+
T Consensus 253 -------------------------------------------------------~~~al~~~p~~~~a~~~lg~a~~~~ 277 (338)
T 2if4_A 253 -------------------------------------------------------CNIVLTEEEKNPKALFRRGKAKAEL 277 (338)
T ss_dssp -------------------------------------------------------HHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred -------------------------------------------------------HHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4455555555567789999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 618 NCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~-ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
|++++|+..|++|++++|++.+++.+++.+ ....++.+++...|.+++.+.|+..
T Consensus 278 g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 278 GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp TCHHHHHHHHHHTTC-----------------------------------------
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 999999999999999999999999999999 5556888999999999999998764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-12 Score=132.73 Aligned_cols=161 Identities=11% Similarity=-0.066 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch--------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc------
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL------ 448 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~--------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~------ 448 (714)
...+...+..+...|+|++|+..|.++++..+. ..+.++|.++...|++++|+..++++++..+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345567888899999999999999999987321 235568889999999999999999999865432
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHH---hcCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 005106 449 GWMYQERSL----YCEGDKRWEDLDKAT---ALDPTLS----YPYMYRASSLMTKQNVEAALAEINRILGFKLA------ 511 (714)
Q Consensus 449 ~~ay~~rg~----~~~~~eAl~d~~kAi---~LdP~~~----~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~------ 511 (714)
+.+|.+.|. .+++++|+..|++|+ +..|+.. .+|+++|.+|..+|++++|+..|++|+++.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 456666654 256699999999999 5667643 69999999999999999999999999998653
Q ss_pred -HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhCC
Q 005106 512 -LECLELRFCFFLALEDYQAA-LCDVQAILTLSP 543 (714)
Q Consensus 512 -~~~~~~R~~~~~~lgd~e~A-l~d~~~al~L~P 543 (714)
..++++.|.+|..+|++++| ...|++|+.+..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 56788899999999999999 777999998753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=136.06 Aligned_cols=243 Identities=9% Similarity=0.021 Sum_probs=187.3
Q ss_pred HhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHH
Q 005106 394 LLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT 472 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi 472 (714)
+-.|.|..++....+ +.. ++........|.|..+|++... . ..+++..+......|.. .+|+..|++.+
T Consensus 24 fy~G~yq~~i~e~~~-~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~-~~~~~~~a~~~la~~~~-~~a~~~l~~l~ 93 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEK-FSKVTDNTLLFYKAKTLLALGQYQSQ-------D-PTSKLGKVLDLYVQFLD-TKNIEELENLL 93 (310)
T ss_dssp HTTTCHHHHTHHHHT-SSCCCCHHHHHHHHHHHHHTTCCCCC-------C-SSSTTHHHHHHHHHHHT-TTCCHHHHHTT
T ss_pred HHhhHHHHHHHHHHh-cCccchHHHHHHHHHHHHHcCCCccC-------C-CCCHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 456889888884432 222 3344566778889999988742 1 22334434444444433 33889999999
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A-LECLELRFCFFLALEDYQAALCDVQAILTLSPD----- 544 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P--~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~----- 544 (714)
+..+....++..+|.++...|++++|+..+.++|..+| + .++....+.++..+|+.+.|.+.+++..+.+|+
T Consensus 94 ~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 94 KDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp TTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 98877788889999999999999999999999999987 4 566666778999999999999999999999994
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC--ChhHHHHHHHHHHHcCChHH
Q 005106 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEA 622 (714)
Q Consensus 545 ~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~--~~~~~~~~g~~L~~lg~~ee 622 (714)
+. ...+ .+++|+.+......+ ..|...|+++.+..|. .+..+.+ ++.++|++++
T Consensus 174 d~------~l~~-------------Laea~v~l~~g~~~~--q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~e 229 (310)
T 3mv2_B 174 NE------MILN-------------LAESYIKFATNKETA--TSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAE 229 (310)
T ss_dssp HH------HHHH-------------HHHHHHHHHHTCSTT--THHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHH
T ss_pred hH------HHHH-------------HHHHHHHHHhCCccH--HHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHH
Confidence 31 1122 256677776653222 2268899999888886 4555555 8999999999
Q ss_pred HHHHHHHHHHh----------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 623 AMRSLQLARQH----------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 623 Al~~~~~Al~l----------~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
|.+.+++++++ +|++++++.|...+.+.+|+ +|-+.++|+..++|+..
T Consensus 230 Ae~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 230 AQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 99999988887 59999999999999999998 99999999999999875
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-14 Score=154.82 Aligned_cols=237 Identities=9% Similarity=0.001 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHhc
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS------VTPLGWMYQERSLY 458 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~------~p~~~~ay~~rg~~ 458 (714)
.+.++|.+++..|++++|++.|.++ +....+...+..+...|++++|+..+..+++. .+.++.+|.+.|.+
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l 110 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 110 (449)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCH
Confidence 5556666666666666666666543 23335555666666666666666666555533 22333344443322
Q ss_pred -------------------------CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 459 -------------------------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE 513 (714)
Q Consensus 459 -------------------------~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~ 513 (714)
+.+++|+..|+++ ..|.++|.++..+|++++|+..|.|| .++.
T Consensus 111 ~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~ 178 (449)
T 1b89_A 111 AELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA----NSTR 178 (449)
T ss_dssp HHHTTTTTCC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc----CCch
Confidence 2224444444444 24444555555555555555555554 1344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHH
Q 005106 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSV 592 (714)
Q Consensus 514 ~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~ 592 (714)
.|.....++...|+++.|..+..+ +..+|++ ..-...+|.+ .+.+. ++..
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~-------------------------l~~lv~~Yek---~G~~eEai~l 229 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLH-IVVHADE-------------------------LEELINYYQD---RGYFEELITM 229 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH-------------------------HHHHHHHHHH---TTCHHHHHHH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh-------------------------HHHHHHHHHH---CCCHHHHHHH
Confidence 444444444445555555444333 2233332 1111122322 12222 4889
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHH--cCChHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLR--LNCPEAAMRSLQLARQHAA-----SDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~--lg~~eeAl~~~~~Al~l~P-----~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
++++|.++|.+...+..+|.++.+ .++..|+++.|...+++.| .++..+..+..+++.-|+||.|+...-+..
T Consensus 230 Le~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 230 LEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 999999999999999999999887 7888899999999999999 999999999999999999999987555444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-13 Score=127.15 Aligned_cols=157 Identities=11% Similarity=-0.052 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF------KLA-LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l------~P~-~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
++|...++......+..+.++.++|.++..+|++++|+..|++++++ .|. ..++.++|.++..+|++++|+..
T Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 9 ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRC 88 (203)
T ss_dssp HHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666444444433377889999999999999999999999999994 332 45677899999999999999999
Q ss_pred HHHHHhh---CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHH
Q 005106 535 VQAILTL---SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (714)
Q Consensus 535 ~~~al~L---~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g 611 (714)
|++++++ .|++.. ..+.+++++|
T Consensus 89 ~~~al~~~~~~~~~~~------------------------------------------------------~~~~~~~~lg 114 (203)
T 3gw4_A 89 FLEERELLASLPEDPL------------------------------------------------------AASANAYEVA 114 (203)
T ss_dssp HHHHHHHHHHSCCCHH------------------------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHH------------------------------------------------------HHHHHHHHHH
Confidence 9999998 332200 1134678899
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 612 LLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 612 ~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
.++..+|++++|+..+++|+++.+.. +.++.++|.++..+|++++|+..+++|+++-+...
T Consensus 115 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 115 TVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999876543 33458999999999999999999999999854443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-12 Score=111.22 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=95.8
Q ss_pred cCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 005106 474 LDPTL-SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (714)
Q Consensus 474 LdP~~-~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~ 551 (714)
++|.. +.+|+.+|.++...|++++|+..|++++..+|+ +..+..++.++...|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------ 76 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------ 76 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------
Confidence 46666 778888888888888888888888888888885 7777778888888888888888777777766664
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
+.+++++|.++..+|++++|+..+++++
T Consensus 77 ----------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 77 ----------------------------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3346677888888889999999999999
Q ss_pred HhCCCChhHHHHHHHHHHhcC
Q 005106 632 QHAASDHERLVYEGWILYDTS 652 (714)
Q Consensus 632 ~l~P~~~ea~~~~G~~ly~~G 652 (714)
+++|++..++.++|.++..+|
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 105 ELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHCTTCHHHHHHHHHHHHHHC
T ss_pred HhCCCcHHHHHHHHHHHHhcc
Confidence 999988888888888887665
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-13 Score=132.36 Aligned_cols=164 Identities=8% Similarity=-0.110 Sum_probs=120.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
..+....+-+.....+|+++.|...++...+-.+. ...+..+|..+...|++++|+..|++++++.|++..+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--- 78 (198)
T 2fbn_A 2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI--- 78 (198)
T ss_dssp --------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH---
T ss_pred CCcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh---
Confidence 34455667788888899999999999887776665 67788899999999999999999999999999875322110
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
+......+ ...+++++|.++..+|++++|+..+++|++++|
T Consensus 79 ----------------------------------~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 79 ----------------------------------LLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp ----------------------------------HHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ----------------------------------HHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 00011111 157899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 005106 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA 682 (714)
Q Consensus 636 ~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~ 682 (714)
+++.+++++|.+++.+|++++|+..|++|++++|+.. ++.+.+.++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887 7777776553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-13 Score=129.56 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=83.8
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC-------
Q 005106 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCP----------EAAMRSLQLARQHAASDHERLVYEGWILYDTS------- 652 (714)
Q Consensus 590 l~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~----------eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G------- 652 (714)
+..++++++++|+++++|++.|.+|..+|++ ++|+..|++|++++|+++++++++|.+|+.+|
T Consensus 22 ~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~ 101 (158)
T 1zu2_A 22 RQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDET 101 (158)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchh
Confidence 7899999999999999999999999999886 59999999999999999999999999999985
Q ss_pred ----CHHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 005106 653 ----HCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (714)
Q Consensus 653 ----~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~ 682 (714)
++++|+..|++|++|+|+++.| .+++.++
T Consensus 102 ~a~g~~~eA~~~~~kAl~l~P~~~~y-~~al~~~ 134 (158)
T 1zu2_A 102 EAKHNFDLATQFFQQAVDEQPDNTHY-LKSLEMT 134 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHhCCCCHHH-HHHHHHH
Confidence 8999999999999999998855 3444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.4e-13 Score=121.30 Aligned_cols=95 Identities=12% Similarity=0.073 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd 527 (714)
|..+...|.+ ++|+..|++|++++|+++.+|+++|.++..+|++++|+..|++|++++|+ +..+.++|.++..+|+
T Consensus 24 g~~~~~~g~~---~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANL---AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3444444434 77788889999999999999999999999999999999999999999996 8888999999999999
Q ss_pred HHHHHHHHHHHHhhCCCch
Q 005106 528 YQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~~ 546 (714)
+++|+..|+++++++|++.
T Consensus 101 ~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999873
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-12 Score=116.01 Aligned_cols=121 Identities=17% Similarity=0.085 Sum_probs=88.1
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 471 Ai~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
++..+|+.+..++.+|..+...|++++|+..|+++++++|+ ...+.++|.++..+|++++|+..|+++++++|++
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 98 (148)
T 2dba_A 20 PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD- 98 (148)
T ss_dssp CCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-
T ss_pred CCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-
Confidence 34566778888888888888888888888888888888886 4556667777777777777777666666666554
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHH
Q 005106 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (714)
Q Consensus 547 ~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~ 626 (714)
+.+++++|.++..+|++++|+..
T Consensus 99 ---------------------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~ 121 (148)
T 2dba_A 99 ---------------------------------------------------------VKALYRRSQALEKLGRLDQAVLD 121 (148)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 23456677777777777777777
Q ss_pred HHHHHHhCCCChhHHHHHHHHHH
Q 005106 627 LQLARQHAASDHERLVYEGWILY 649 (714)
Q Consensus 627 ~~~Al~l~P~~~ea~~~~G~~ly 649 (714)
++++++++|++.+++..++.+..
T Consensus 122 ~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 122 LQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777777777777766665543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-13 Score=153.73 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=105.6
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc
Q 005106 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL 525 (714)
Q Consensus 447 ~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~l 525 (714)
+.|..|..+|++ ++|+..|++|++++|+++.+|.++|.++.++|++++|+..|++|++++|+ +..++++|.+|..+
T Consensus 11 ~lg~~~~~~g~~---~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDY---ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 445555555444 89999999999999999999999999999999999999999999999996 88889999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH--HHhhhhhhHHHHHHhhhhccccccccchHHHHH---------
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV--REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY--------- 594 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l--~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~--------- 594 (714)
|++++|+..|+++++++|++..+. ...+.+ ....+++++| +..++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~------~~l~~~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~ 143 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAK------MKYQECNKIVKQKAFERA------------------IAGDEHKRSVVDSL 143 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHH------HHHHHHHHHHHHHHHCCC------------------------CCSTTTCC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHHHHHHHHH------------------hccccccchhHhhh
Confidence 999999999999999999985422 222222 2223444444 44444
Q ss_pred --HHHHhCCCChhHHHHHH
Q 005106 595 --QMLESDAPKGVLYFRQS 611 (714)
Q Consensus 595 --qaL~l~P~~~~~~~~~g 611 (714)
++++++|.....++..+
T Consensus 144 ~~~al~~~~~~~~~~~~~~ 162 (477)
T 1wao_1 144 DIESMTIEDEYSGPKLEDG 162 (477)
T ss_dssp TTSSCCCCTTCCSCCCGGG
T ss_pred hhhhccccccccccccccc
Confidence 77888888777776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.3e-13 Score=142.55 Aligned_cols=155 Identities=8% Similarity=-0.064 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
....+++++|..++..|+|++|+..|++||++.+.+.. +...|++.++...+.. ..+-+.|.+|..+|++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------~~~~~~~~~~~~~l~~--~~~~nla~~~~~~g~~-- 246 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM------FQLYGKYQDMALAVKN--PCHLNIAACLIKLKRY-- 246 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH------HTCCHHHHHHHHHHHT--HHHHHHHHHHHTTTCC--
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh------hhhcccHHHHHHHHHH--HHHHHHHHHHHHcCCH--
Confidence 34567889999999999999999999999999766542 2234455555444321 1233466666666555
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALEDYQAALCDVQAI 538 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~-~~~lgd~e~Al~d~~~a 538 (714)
++|+.+|++|++++|+++.+|+++|.+|..+|++++|+..|++|++++|+ ..++.+++.+ ....+..++|...|.++
T Consensus 247 -~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 247 -DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp -HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999996 6777777766 55677889999999999
Q ss_pred HhhCCCch
Q 005106 539 LTLSPDYR 546 (714)
Q Consensus 539 l~L~P~~~ 546 (714)
+.++|++.
T Consensus 326 l~~~p~~~ 333 (338)
T 2if4_A 326 FKGKDEGG 333 (338)
T ss_dssp --------
T ss_pred hCCCCCCC
Confidence 99999874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=144.40 Aligned_cols=238 Identities=13% Similarity=-0.049 Sum_probs=97.1
Q ss_pred HHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHH
Q 005106 390 GCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRW 465 (714)
Q Consensus 390 G~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl 465 (714)
.+.....|++++|.+++++. +++.+|..+|.++...|++.+|++.|.++ ++...|++.+. .+++++|+
T Consensus 10 ~~ll~~~~~ld~A~~fae~~---~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhC---CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 34445678899999999996 67789999999999999999999999775 33335544432 34559999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 466 ~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
..|.++++..|+ +.....++.+|.++|+++++...++ .|+...|...|..+...|+|++|+..|.++ +++
T Consensus 82 ~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----~n~ 151 (449)
T 1b89_A 82 KYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----SNF 151 (449)
T ss_dssp ----------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT----TCH
T ss_pred HHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----hhH
Confidence 999999996555 7888999999999999999887775 477778899999999999999999999987 332
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 005106 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (714)
..++.+.-.+++++. |+..+++| +++..|-..+.+...+|+++.|..
T Consensus 152 ----------~~LA~~L~~Lg~yq~------------------AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 152 ----------GRLASTLVHLGEYQA------------------AVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp ----------HHHHHHHHTTTCHHH------------------HHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------HHHHHHHHHhccHHH------------------HHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHH
Confidence 111222222333333 47788888 588999999999999999999988
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhh
Q 005106 626 SLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALA 682 (714)
Q Consensus 626 ~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~ 682 (714)
.... +...|++ +.....++.+.|+++||+..+|+++.++|.-. .|.--|.+++
T Consensus 199 ~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ 252 (449)
T 1b89_A 199 CGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 252 (449)
T ss_dssp TTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8775 4466655 44577789999999999999999999998887 8887776654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.3e-12 Score=108.52 Aligned_cols=71 Identities=10% Similarity=0.093 Sum_probs=45.2
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 474 LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
++|+++.+|..+|.++...|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 45667777777777777777777777777777766664 555555666666666666665555555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=106.07 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~ 544 (714)
.+|..+|.++...|++++|+..|++++..+|+ +..+..+|.++..+|++++|+..++++++++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 44555555555555555555555555555553 444455555555555555555544444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=112.06 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
+++++|+..|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..++++|.++..+|++++|+..|++
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34477777788899999999999999999999999999999999999999996 88899999999999999999999999
Q ss_pred HHhhCCCc
Q 005106 538 ILTLSPDY 545 (714)
Q Consensus 538 al~L~P~~ 545 (714)
+++++|+.
T Consensus 103 a~~~~p~~ 110 (137)
T 3q49_B 103 AYSLAKEQ 110 (137)
T ss_dssp HHHHHHHT
T ss_pred HHHHChhH
Confidence 99999984
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=110.18 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|+++++++|++..+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++
T Consensus 33 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 33 PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555555555553 44445555555555555555555555555
Q ss_pred hCCCc
Q 005106 541 LSPDY 545 (714)
Q Consensus 541 L~P~~ 545 (714)
++|++
T Consensus 113 ~~p~~ 117 (133)
T 2lni_A 113 LDSSC 117 (133)
T ss_dssp HCGGG
T ss_pred hCCCc
Confidence 55544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.33 E-value=7.5e-12 Score=136.22 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILG----------------FKLA-LECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~----------------l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
+..|.++|.++...|++++|+..|++||+ ++|. ..++.++|.+|..+|++++|+.+|++|+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 6664 677788888888889888888888887777
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChH
Q 005106 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (714)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~e 621 (714)
+|++ +.+|+++|.++..+|+++
T Consensus 303 ~p~~----------------------------------------------------------~~a~~~lg~~~~~~g~~~ 324 (370)
T 1ihg_A 303 DPSN----------------------------------------------------------TKALYRRAQGWQGLKEYD 324 (370)
T ss_dssp CTTC----------------------------------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred Cchh----------------------------------------------------------HHHHHHHHHHHHHccCHH
Confidence 7765 456888999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 622 eAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
+|+..|++|++++|++.+++..++.++..+|+++++...
T Consensus 325 eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 325 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=127.79 Aligned_cols=157 Identities=10% Similarity=-0.074 Sum_probs=124.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccc---h-----hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCc------HHHH
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH---I-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL------GWMY 452 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~---~-----~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~------~~ay 452 (714)
......+...|+|++|+..|+++++..+ . ..+.++|.++...|++++|+..+++++...+.. +.+|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3456677888999999999999988632 1 123357888888899999999999999864321 3356
Q ss_pred HHHHhc----CChhHHHHHHHHHHh-------cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHH
Q 005106 453 QERSLY----CEGDKRWEDLDKATA-------LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LEC 514 (714)
Q Consensus 453 ~~rg~~----~~~~eAl~d~~kAi~-------LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~ 514 (714)
.+.|.+ +++++|+..|++|++ ..|..+.+|+|+|.+|..+|++++|+..+++||++.+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 666542 466999999999994 44455679999999999999999999999999998541 567
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 005106 515 LELRFCFFLALE-DYQAALCDVQAILTLSP 543 (714)
Q Consensus 515 ~~~R~~~~~~lg-d~e~Al~d~~~al~L~P 543 (714)
++++|.++..+| ++++|+..|++|+++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 888999999999 57999999999998753
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-11 Score=108.74 Aligned_cols=119 Identities=11% Similarity=-0.009 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-L---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~---~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~ 555 (714)
.+++++|.++...|++++|+..|+++++.+|+ + ..++.+|.++..+|++++|+..|+++++++|++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~--------- 73 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD--------- 73 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---------
Confidence 35666777777777777777777777777764 3 4566677777777777777777777666666651
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005106 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (714)
Q Consensus 556 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P 635 (714)
..+.+++++|.++..+|++++|+..++++++..|
T Consensus 74 ----------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 74 ----------------------------------------------KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp ----------------------------------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ----------------------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 0134456667777777777777777777777777
Q ss_pred CChhHHHHHHHHHHhcCC
Q 005106 636 SDHERLVYEGWILYDTSH 653 (714)
Q Consensus 636 ~~~ea~~~~G~~ly~~G~ 653 (714)
++..+...+..+-.-.++
T Consensus 108 ~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 108 GSDAARVAQERLQSIRLG 125 (129)
T ss_dssp TSHHHHHHHHHHHHHC--
T ss_pred CChHHHHHHHHHHHHHhh
Confidence 777666665555444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-12 Score=114.66 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=92.4
Q ss_pred hHHHHHHHHHh---CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 589 SLSVIYQMLES---DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 589 al~~~~qaL~l---~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
|+..|+++|++ +|.++.+++++|.++..+|++++|+..+++|++++|+++++++++|.+++.+|++++|+..+++++
T Consensus 9 A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp CHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 68999999999 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHH--HHHHHHHHhhccCCCC
Q 005106 666 QMKRSFE--AFFLKAYALADSSQDS 688 (714)
Q Consensus 666 ~i~~~~~--a~~~~~~~~~~~~~~~ 688 (714)
++.|+.. ..+.++.......+|.
T Consensus 89 ~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 89 AETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999886 5667777766666654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=108.28 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDY 528 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~ 528 (714)
++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+...+.++..+|++
T Consensus 63 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 44444455556666666666666666666666666666666666666664 55555566666666553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-12 Score=114.71 Aligned_cols=140 Identities=11% Similarity=0.015 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-------ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~-------~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~ 551 (714)
+.++.++|.++...|++++|+..+++++++.+.. ..+...|.++..+|++++|+..|++++++.|+...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---- 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence 4688999999999999999999999999986531 35677899999999999999999999988665310
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
. +..+.+++++|.++..+|++++|+..+++|+
T Consensus 85 -----------------------------------~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 85 -----------------------------------R-------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp -----------------------------------H-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------------------------c-------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0 0113567889999999999999999999999
Q ss_pred HhCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 632 QHAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 632 ~l~P~------~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
++.+. .+.++.++|.+++.+|++++|+..+++++++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 117 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 98543 3678999999999999999999999999988554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-11 Score=108.15 Aligned_cols=108 Identities=11% Similarity=-0.059 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHH
Q 005106 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (714)
Q Consensus 514 ~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~ 593 (714)
.++.+|..+...|++++|+..|+++++.+|++.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------------------------------------- 36 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV----------------------------------------------- 36 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST-----------------------------------------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc-----------------------------------------------
Confidence 356788888899999999998888888888762
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 594 ~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
..+.+++++|.++..+|++++|+..|+++++.+|++ +++++++|.+++.+|++++|+..|++++++.|+
T Consensus 37 --------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 37 --------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp --------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred --------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 112578889999999999999999999999999999 899999999999999999999999999999998
Q ss_pred HH-HHHH
Q 005106 671 FE-AFFL 676 (714)
Q Consensus 671 ~~-a~~~ 676 (714)
.. +...
T Consensus 109 ~~~~~~a 115 (129)
T 2xev_A 109 SDAARVA 115 (129)
T ss_dssp SHHHHHH
T ss_pred ChHHHHH
Confidence 77 4433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-11 Score=105.73 Aligned_cols=92 Identities=14% Similarity=-0.020 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
|+..+++++..+|.++.+++++|.++..+|++++|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++
T Consensus 23 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 23 ALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHH-HHHHHHHH
Q 005106 669 RSFE-AFFLKAYA 680 (714)
Q Consensus 669 ~~~~-a~~~~~~~ 680 (714)
|+.. +++..|.+
T Consensus 103 ~~~~~~~~~l~~~ 115 (118)
T 1elw_A 103 ANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 9887 76666544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-11 Score=103.62 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 591 (714)
...++..|.++...|++++|+..|+++++.+|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------------------- 42 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------------------------------------- 42 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----------------------------------------------
Confidence 4566677778888888888877777776666654
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+.+++++|.++...|++++|+..++++++++|+++.+++++|.+++.+|++++|+..|++++.+.|+.
T Consensus 43 ------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 43 ------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45677889999999999999999999999999999999999999999999999999999999999988
Q ss_pred H-HHHHHHHHhh
Q 005106 672 E-AFFLKAYALA 682 (714)
Q Consensus 672 ~-a~~~~~~~~~ 682 (714)
. +++..|.++.
T Consensus 111 ~~~~~~l~~~~~ 122 (125)
T 1na0_A 111 AEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 7 8888877653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-11 Score=105.46 Aligned_cols=105 Identities=10% Similarity=0.017 Sum_probs=86.9
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccc
Q 005106 509 KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 587 (714)
Q Consensus 509 ~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~ 587 (714)
+|+ +..+..+|.++...|++++|+..|+++++++|++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------------------ 39 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------------------------------------------ 39 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------------------------------------------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------------------------------------------
Confidence 453 5556667777777777777777666666665554
Q ss_pred chHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 005106 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDT-SHCEEGLRKAEES 664 (714)
Q Consensus 588 ~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~--~~ea~~~~G~~ly~~-G~~eeAl~~ye~A 664 (714)
+.+++++|.++..+|++++|+..++++++++|+ +.++++++|.++..+ |++++|+..++++
T Consensus 40 ----------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 40 ----------------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456788999999999999999999999999999 999999999999999 9999999999999
Q ss_pred HhcCCCH
Q 005106 665 IQMKRSF 671 (714)
Q Consensus 665 i~i~~~~ 671 (714)
+...|+.
T Consensus 104 ~~~~p~~ 110 (112)
T 2kck_A 104 KLEHHHH 110 (112)
T ss_dssp GGGCCCC
T ss_pred hhcccCC
Confidence 9998874
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=111.51 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=103.8
Q ss_pred cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccc
Q 005106 508 FKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD 586 (714)
Q Consensus 508 l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d 586 (714)
.+|. ...+..+|..+...|++++|+..|+++++++|++..
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------------------- 63 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD--------------------------------------- 63 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---------------------------------------
Confidence 3454 777888999999999999999999999999998510
Q ss_pred cchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 587 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 587 ~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
.+.+|+++|.++..+|++++|+..++++++++|+++.+++++|.+++.+|++++|+..|+++++
T Consensus 64 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 64 ----------------QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp ----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1356888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHH-HHHHHHHH
Q 005106 667 MKRSFE-AFFLKAYA 680 (714)
Q Consensus 667 i~~~~~-a~~~~~~~ 680 (714)
++|+.. ++...+-+
T Consensus 128 ~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 128 LEPKNKVFQEALRNI 142 (148)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHH
Confidence 999877 66555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-12 Score=113.62 Aligned_cols=88 Identities=15% Similarity=0.011 Sum_probs=82.1
Q ss_pred CChhHHHHHHHHHHhc---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 459 CEGDKRWEDLDKATAL---DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~L---dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
+++++|+..|++|+++ +|+++.+|.++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4449999999999999 7999999999999999999999999999999999996 88899999999999999999999
Q ss_pred HHHHHhhCCCch
Q 005106 535 VQAILTLSPDYR 546 (714)
Q Consensus 535 ~~~al~L~P~~~ 546 (714)
|+++++++|++.
T Consensus 84 ~~~al~~~p~~~ 95 (117)
T 3k9i_A 84 LLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHCCCH
T ss_pred HHHHHHhCCCcH
Confidence 999999999984
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=134.33 Aligned_cols=138 Identities=12% Similarity=0.115 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCh
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~ 461 (714)
...++..+|..++..|+|++|+..|++||++.+...
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-------------------------------------------- 257 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-------------------------------------------- 257 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------------------------------------------
Confidence 456677888888888888888888888887632210
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
+..+.+++.+++|.++.+|.++|.++..+|++++|+..+++||+++|+ +.+++.+|.+|..+|++++|+.+|++|++
T Consensus 258 --~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 258 --AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp --HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 011245677788889999999999999999999999999999999996 88889999999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (714)
++|++. .+...+..+....++.+++
T Consensus 336 l~P~~~------~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 336 IAPEDK------AIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HCTTCH------HHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCH------HHHHHHHHHHHHHHHHHHH
Confidence 999983 3445555555555555555
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-11 Score=116.45 Aligned_cols=151 Identities=11% Similarity=-0.078 Sum_probs=93.5
Q ss_pred hccchHHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHHHHHh----cCChh
Q 005106 395 LRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVIS------SVTPLGWMYQERSL----YCEGD 462 (714)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~------~~p~~~~ay~~rg~----~~~~~ 462 (714)
..|+|++|++.++..... ....++..+|.++..+|++++|+..+.++++ ..+..+.++.++|. .++++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 345555555533222211 1233444455555555555555555555555 22223333333332 13335
Q ss_pred HHHHHHHHHHhc---CC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CH----HHHHHHHHHHHhcCCH
Q 005106 463 KRWEDLDKATAL---DP----TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---AL----ECLELRFCFFLALEDY 528 (714)
Q Consensus 463 eAl~d~~kAi~L---dP----~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P---~~----~~~~~R~~~~~~lgd~ 528 (714)
+|+..|++|+++ .| ....++.++|.++..+|++++|+..+++++++.+ ++ ..+.++|.++..+|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666666666 22 3356799999999999999999999999998632 22 2346789999999999
Q ss_pred HHHHHHHHHHHhhCCCc
Q 005106 529 QAALCDVQAILTLSPDY 545 (714)
Q Consensus 529 e~Al~d~~~al~L~P~~ 545 (714)
++|+..+++++++....
T Consensus 164 ~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999986544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=107.24 Aligned_cols=125 Identities=8% Similarity=-0.009 Sum_probs=105.2
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
|..+..|+.+|.++...|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++++|++....
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----- 75 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY----- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH-----
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH-----
Confidence 345678999999999999999999999999999995 88888999999999999999999999999988651100
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005106 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (714)
Q Consensus 555 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~ 634 (714)
+..+.+++++|.++..+|++++|+..+++++++.
T Consensus 76 ----------------------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 76 ----------------------------------------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 0113567889999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcC
Q 005106 635 ASDHERLVYEGWILYDTS 652 (714)
Q Consensus 635 P~~~ea~~~~G~~ly~~G 652 (714)
| +.+....++.+.-.++
T Consensus 110 ~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 110 R-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp C-CHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHH
Confidence 9 5888888887765544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-11 Score=129.23 Aligned_cols=218 Identities=13% Similarity=0.018 Sum_probs=160.8
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 005106 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (714)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eA 498 (714)
...|+.+...|++.+|++.|.++++..++.+.++..++.. .......++| +.++|.+|..+|++++|
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~a----------l~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVD---DKRRNEQETS----------ILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBC---SHHHHHHHHH----------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHH---HHHhhhHHHH----------HHHHHHHHHHCCCHHHH
Confidence 4456667777888888888888888777766655555443 4445555544 47889999999999999
Q ss_pred HHHHHHHHhcCCC-HH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHH
Q 005106 499 LAEINRILGFKLA-LE------CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (714)
Q Consensus 499 l~~~~kAL~l~P~-~~------~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A 571 (714)
+..|.+++.+.+. .. ...+.+.++...|++++|+..+++++...+....-.++..+...++.+....+++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 9999988887553 11 1233567777888899999999888887665433334455566666666666666666
Q ss_pred HHHHhhhhccccccccchHHHHHHHHHh------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------h
Q 005106 572 DCWLQLYDRWSSVDDIGSLSVIYQMLES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------H 638 (714)
Q Consensus 572 ~~~~~l~~~~~~~~d~~al~~~~qaL~l------~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ 638 (714)
+..+.+++.. .|..++++.++|.++..+|++++|...|++|+.+.|.. +
T Consensus 155 ------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 155 ------------------LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp ------------------HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred ------------------HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 5556666655 45567899999999999999999999999999986543 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
..+.+.|.++...|++++|...|.+++..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677788888899999999999999874
|
| >4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=106.62 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=65.6
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHHHhhc-----c---CCCC--CC
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSV-----T---GSLN--GV 250 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Y-----t---g~l~--~i 250 (714)
|+|+- +|++|.+||.| |++|+||++||.+ ++.|+....|.|+ +|++.+|+.+++|+| + +.++ ++
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~--~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECT--TSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECC--CCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 66665 78999999999 9999999999987 7888888999999 599999999999999 5 5554 37
Q ss_pred CHHHHHHHHHHHhhhCh
Q 005106 251 TPNLLLEILIFANKFCC 267 (714)
Q Consensus 251 ~~~~v~~lL~aAd~~~v 267 (714)
+++++++|+.||++|++
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 78999999999999975
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=105.65 Aligned_cols=140 Identities=15% Similarity=0.019 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--h------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--I------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMY 452 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay 452 (714)
....++..+|.++...|++++|+..|++|+++.+ . .++..+|.++..+|++++|+..+.++++..+..+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-- 84 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-- 84 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--
Confidence 4567789999999999999999999999998822 1 36778899999999999998888887765432110
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHhc
Q 005106 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---A----LECLELRFCFFLAL 525 (714)
Q Consensus 453 ~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P---~----~~~~~~R~~~~~~l 525 (714)
.+....++.++|.++..+|++++|+..+++++++.+ + ...+.++|.++..+
T Consensus 85 ----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 85 ----------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 011246788999999999999999999999998732 1 34566788999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 005106 526 EDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~ 544 (714)
|++++|+..+++++++...
T Consensus 143 g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TCHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.8e-11 Score=104.56 Aligned_cols=84 Identities=13% Similarity=0.011 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+ +..+.++|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999996 88899999999999999999999999999
Q ss_pred hCCCc
Q 005106 541 LSPDY 545 (714)
Q Consensus 541 L~P~~ 545 (714)
++|+.
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 99975
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=103.24 Aligned_cols=106 Identities=10% Similarity=0.023 Sum_probs=91.3
Q ss_pred Hhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------hhHHHHHHH
Q 005106 575 LQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------HERLVYEGW 646 (714)
Q Consensus 575 ~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ea~~~~G~ 646 (714)
..++......+++. |+..+++++..+|.++.+++++|.++..+|++++|+..+++++++.|++ +.+++++|.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 33333333334444 5889999999999999999999999999999999999999999999988 999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005106 647 ILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 680 (714)
Q Consensus 647 ~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~ 680 (714)
+++.+|++++|+..|++++++.|+.......+.+
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999987766655544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=103.14 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~ 668 (714)
++..++++++.+|.++.+++++|.++..+|++++|+..+++|++++|+++.+++++|.++..+|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCHH
Q 005106 669 RSFE 672 (714)
Q Consensus 669 ~~~~ 672 (714)
|+..
T Consensus 84 ~~~~ 87 (115)
T 2kat_A 84 QSRG 87 (115)
T ss_dssp HHHT
T ss_pred cccc
Confidence 8653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-09 Score=118.16 Aligned_cols=156 Identities=12% Similarity=0.077 Sum_probs=107.9
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHH
Q 005106 516 ELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (714)
Q Consensus 516 ~~R~~~~~~lgd---~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~ 592 (714)
+.||.-+...++ ..+|+..|++|++++|+|..++...+.... +....+.+.... ...+.. ++.
T Consensus 200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~---~~~~~~~~~~~~-~~~l~~---------a~~- 265 (372)
T 3ly7_A 200 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI---VRHSQHPLDEKQ-LAALNT---------EID- 265 (372)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHHHHSCCCHHH-HHHHHH---------HHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHhccCCCchhh-HHHHHH---------HHH-
Confidence 456665554443 478888888888888888554332221111 000000011000 000000 011
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 593 ~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
--.++..+|.++.+|.-.|..+...|++++|+..+++|++++|+ +.++..+|+++...|++++|++.|++|+.++|+.+
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 11345788999999999999999999999999999999999985 78999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCC
Q 005106 673 AFFLKAYALADSSQ 686 (714)
Q Consensus 673 a~~~~~~~~~~~~~ 686 (714)
.|++-.-..=.|+|
T Consensus 345 t~~~~~~l~F~sn~ 358 (372)
T 3ly7_A 345 TLYWIENGIFQTSV 358 (372)
T ss_dssp HHHHHHHSSSCCCH
T ss_pred hHHHHhCceeecch
Confidence 87765554445554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.1e-10 Score=120.64 Aligned_cols=172 Identities=8% Similarity=-0.060 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLAL------------------ECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~------------------~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
.+....|..+...|+|++|+..|.+++...|+. .++..+|.+|..+|++++|+..|++++++
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445566777777788888888888888776641 23567899999999999999999999999
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC------CCChhHHHHHHHHHH
Q 005106 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD------APKGVLYFRQSLLLL 615 (714)
Q Consensus 542 ~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~------P~~~~~~~~~g~~L~ 615 (714)
.+..........+....+.+....+.+++| +..+.+++... +..+.++.++|.++.
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQ------------------IFVCEKSIEFAKREKRVFLKHSLSIKLATLHY 146 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHH------------------HHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHH------------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 887644444344455555555455555555 55666666654 344678999999999
Q ss_pred HcCChHHHHHHHHHHHHh------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 616 RLNCPEAAMRSLQLARQH------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 616 ~lg~~eeAl~~~~~Al~l------~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
.+|++++|+..+++++.. .|..++++.++|.++..+|++++|...|++|+.+.+
T Consensus 147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 999999999999999987 555678999999999999999999999999998753
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-10 Score=99.74 Aligned_cols=73 Identities=8% Similarity=0.058 Sum_probs=68.0
Q ss_pred hCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 599 l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
.+|+++.+|+++|.++..+|++++|+..+++|++++|+++.+++++|.++..+|++++|+..|++|+++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999997654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=9.1e-11 Score=101.98 Aligned_cols=79 Identities=6% Similarity=-0.011 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH------H-HHHH
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF------E-AFFL 676 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~------~-a~~~ 676 (714)
+..|+++|.++..+|++++|+..|++|++++|+++.+++++|.+++.+|++++|+..|+++++++|++ . +++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666653 2 5555
Q ss_pred HHHHhh
Q 005106 677 KAYALA 682 (714)
Q Consensus 677 ~~~~~~ 682 (714)
+|.++.
T Consensus 84 ~~~~~~ 89 (111)
T 2l6j_A 84 LELAQG 89 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.2e-10 Score=96.21 Aligned_cols=94 Identities=9% Similarity=-0.009 Sum_probs=86.6
Q ss_pred HHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHH
Q 005106 570 IADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLV 642 (714)
Q Consensus 570 ~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~------~ea~~ 642 (714)
.+++|..++......+++. |+..++++++++|.++.+|+++|.++..+|++++|+..+++|++++|++ +.+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4667788888888888888 8999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 005106 643 YEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 643 ~~G~~ly~~G~~eeAl~~ye~ 663 (714)
.+|.++..+|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999998877654
|
| >1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D | Back alignment and structure |
|---|
Probab=99.05 E-value=5.5e-10 Score=105.31 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=83.0
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCC----------------
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS---------------- 246 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~---------------- 246 (714)
|+|+. +|+.|.+||.+ |..|++|++||.+.- ...|.|+ +|+..+++.|++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLP--NVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECT--TCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecC--CcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 77777 88999999998 899999999998631 4579999 599999999999999876
Q ss_pred ----------CCCCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 247 ----------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 247 ----------l~~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
+. ++.+++.+|+.||+++++..|.+.|+++++.++.
T Consensus 77 ~~i~~wD~~F~~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 77 DDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 122 (141)
T ss_dssp ----HHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHh-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 66 8899999999999999999999999999999986
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.03 E-value=8.9e-10 Score=92.24 Aligned_cols=82 Identities=11% Similarity=0.076 Sum_probs=77.2
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Q 005106 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAY 679 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~ 679 (714)
|.++.+++++|.++..+|++++|+..+++|++++|+++.+++++|.+++.+|++++|+..|+++++++|+.. ++++.|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999999999999999877 8998888
Q ss_pred Hhh
Q 005106 680 ALA 682 (714)
Q Consensus 680 ~~~ 682 (714)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.01 E-value=5.7e-10 Score=97.43 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=66.6
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 474 LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.+|+++.+|+++|.++..+|++++|+..|+++++++|+ +.++.++|.+|..+|++++|+..|+++++++|+.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 48999999999999999999999999999999999996 8889999999999999999999999999998875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.95 E-value=5.7e-09 Score=110.72 Aligned_cols=56 Identities=13% Similarity=-0.116 Sum_probs=43.5
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 600 ~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
+|+++++..|+..+-..+|+ +|.+.++++..++|+++....+.. +...||++..+|
T Consensus 251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~----k~~~Fd~~~~ky 306 (310)
T 3mv2_B 251 VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE----IDAKFDELVRKY 306 (310)
T ss_dssp HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH----HHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH----HHHHHHHHHHHh
Confidence 58889999999888888997 799999999999999998765532 234455555544
|
| >2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-10 Score=109.90 Aligned_cols=105 Identities=16% Similarity=0.276 Sum_probs=58.9
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCC----------------
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS---------------- 246 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~---------------- 246 (714)
|+|+. +|+.|.+||.+ |..|++|++||.++. ....|.|+ +|+..+|+.|++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 79 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLP--NVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS 79 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCT--TSCHHHHHHHHHC---------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCC--cCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 67765 89999999998 899999999998753 23478888 699999999999999986
Q ss_pred -----------CCCCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC--CHhhHHHHHHHh
Q 005106 247 -----------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA--SREDAVELMGYA 295 (714)
Q Consensus 247 -----------l~~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~--~~~n~l~l~~~A 295 (714)
+. ++.+++.+|+.||++|++..|.+.|+++++.++. ++++...++...
T Consensus 80 ~~~i~~wD~~Fl~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~ 140 (160)
T 2p1m_A 80 DDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIK 140 (160)
T ss_dssp ----------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCC
T ss_pred cchhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCC
Confidence 34 7788999999999999999999999999999985 456655544443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-08 Score=108.42 Aligned_cols=144 Identities=16% Similarity=0.081 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhc---cchHHHHHHHHHHHhccchh--hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 005106 383 LLAFHQLGCVRLLR---KEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~---g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~ 457 (714)
+..++.+|..+..+ ..+.+|+.+|++||+++|.+ ++.+++.++... ....+..+......
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~~~~~~~~~l-- 260 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHPLDEKQLAAL-- 260 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSCCCHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCCCchhhHHHH--
Confidence 44456667766654 45789999999999997765 455556655511 00011111111111
Q ss_pred cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA 537 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~ 537 (714)
..|+.. ..++.++|.++.+|.-+|.++...|++++|+..++||++++|+...+..+|.++...|++++|+..|++
T Consensus 261 ----~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 261 ----NTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp ----HHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 233332 246789999999999999999999999999999999999999988788899999999999999999999
Q ss_pred HHhhCCCch
Q 005106 538 ILTLSPDYR 546 (714)
Q Consensus 538 al~L~P~~~ 546 (714)
|+.++|...
T Consensus 336 AlrL~P~~~ 344 (372)
T 3ly7_A 336 AFNLRPGAN 344 (372)
T ss_dssp HHHHSCSHH
T ss_pred HHhcCCCcC
Confidence 999999874
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-09 Score=93.43 Aligned_cols=87 Identities=7% Similarity=-0.050 Sum_probs=72.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSY-PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~-ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (714)
|..+...|++ ++|+..|+++++++|+++. +|.++|.++..+|++++|+..|+++++++|+ +..+.+ +
T Consensus 7 a~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 7 IKELINQGDI---ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHTCH---HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 4555556555 8888888999999999999 9999999999999999999999999999996 554432 6
Q ss_pred CHHHHHHHHHHHHhhCCCch
Q 005106 527 DYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~ 546 (714)
.+.+|+..|++++.++|++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 78889999999999998863
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-08 Score=84.32 Aligned_cols=48 Identities=10% Similarity=0.000 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G 652 (714)
.+++++|.++.++|++++|+..++++++++|+++.++.++|.++..+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 345667777777777777777777777777777777777777776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.2e-08 Score=102.41 Aligned_cols=83 Identities=5% Similarity=-0.013 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhCCC--ChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHhc-CCHHHHHH
Q 005106 589 SLSVIYQMLESDAP--KGVLYFRQSLLLLRL-----NCPEAAMRSLQLARQHAASD-HERLVYEGWILYDT-SHCEEGLR 659 (714)
Q Consensus 589 al~~~~qaL~l~P~--~~~~~~~~g~~L~~l-----g~~eeAl~~~~~Al~l~P~~-~ea~~~~G~~ly~~-G~~eeAl~ 659 (714)
+.+.++|||++||+ ++.+|..+|.++.++ |.++.|.+.|++|++++|+. .+.++..|..+... |++++|.+
T Consensus 182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~ 261 (301)
T 3u64_A 182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDE 261 (301)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH
Confidence 35589999999999 778999999999997 99999999999999999975 99999999999885 99999999
Q ss_pred HHHHHHhcCCCH
Q 005106 660 KAEESIQMKRSF 671 (714)
Q Consensus 660 ~ye~Ai~i~~~~ 671 (714)
.+++|+++.|..
T Consensus 262 ~L~kAL~a~p~~ 273 (301)
T 3u64_A 262 ALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCGGG
T ss_pred HHHHHHcCCCCC
Confidence 999999998773
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=87.39 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF 675 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e-a~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~ 675 (714)
.+++|.++...|++++|+..++++++++|+++. +++++|.+++.+|++++|+..|+++++++|++. +++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 467888888889999999999999999999888 999999999999999999999999999988877 553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4e-07 Score=106.67 Aligned_cols=225 Identities=8% Similarity=-0.066 Sum_probs=159.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHhc----CChhHHH-HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 005106 435 YEKLNSVISSVTPLGWMYQERSLY----CEGDKRW-EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF- 508 (714)
Q Consensus 435 ~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl-~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l- 508 (714)
...|++++...|..+..|..-+.+ +..++|. ..|++|+...|.....|...+......|+++.|...|++++..
T Consensus 329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 455667777777777666665443 3346786 8899999999999888999999999999999999999999974
Q ss_pred ----------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 005106 509 ----------KLA------------LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (714)
Q Consensus 509 ----------~P~------------~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (714)
.|. ...|...+.+....|+.+.|..-|.+|++..|... .........++...
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~- 482 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHI- 482 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTT-
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHh-
Confidence 242 12344445566677889999999999998733211 00111111111111
Q ss_pred hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHH
Q 005106 567 NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLV 642 (714)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~---~~ea~~ 642 (714)
.++.+ |..+|+++|+..|.++..|...+..+...|+.+.|...|++|+...|+ ....+.
T Consensus 483 -----------------~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~ 545 (679)
T 4e6h_A 483 -----------------SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQ 545 (679)
T ss_dssp -----------------TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 12222 477899999999999999999999999999999999999999999984 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHhh
Q 005106 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFE--AFFLKAYALA 682 (714)
Q Consensus 643 ~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~--a~~~~~~~~~ 682 (714)
.....-...|+.+.+...++|+....|+.. ..|..=|.+.
T Consensus 546 ~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~~ 587 (679)
T 4e6h_A 546 KVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVL 587 (679)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCBT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC
Confidence 333334466999999999999999998855 5555444444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.74 E-value=5.6e-07 Score=105.38 Aligned_cols=228 Identities=9% Similarity=-0.033 Sum_probs=170.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005106 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAAL-AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTL 541 (714)
Q Consensus 464 Al~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl-~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L 541 (714)
....|++|+...|.++..|+..|..+...|+.++|+ ..|++|+...|. ...|...+.+....|++++|...|++++..
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999998 999999999996 555666788899999999999999999985
Q ss_pred C-----------CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHh-CCCChhHHH
Q 005106 542 S-----------PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLES-DAPKGVLYF 608 (714)
Q Consensus 542 ~-----------P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l-~P~~~~~~~ 608 (714)
- |.+.. .+.. -..+.+..|+....-..+.++.+ |..+|.+|+.. .+.....|.
T Consensus 408 l~~~~~~~~~~~p~~~~------------~~~~--~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNES------------AINQ--LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHSTTCHH------------HHHH--HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred HHHHhhhhhhccCcchh------------hhhh--hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence 2 43200 0000 00011222333333222233333 57799999998 556678888
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHhhcc
Q 005106 609 RQSLLLLRLNC-PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS---FEAFFLKAYALADS 684 (714)
Q Consensus 609 ~~g~~L~~lg~-~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~---~~a~~~~~~~~~~~ 684 (714)
..|.+..+.|. .+.|...|+++++..|+++..+...+..+...|+.+.|-+.|++|+...|+ ....+.+-+.+.-.
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 88887777765 899999999999999999998878888888999999999999999999884 44666666666666
Q ss_pred CCCCCchhhHHHHHHHhhcCCCC
Q 005106 685 SQDSSCSSTVVSLLEDALKCPSD 707 (714)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~ 707 (714)
-=|.++...|.+-+-+ .||.+
T Consensus 554 ~G~~~~~~~v~~R~~~--~~P~~ 574 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFE--KFPEV 574 (679)
T ss_dssp TCCSHHHHHHHHHHHH--HSTTC
T ss_pred cCCHHHHHHHHHHHHH--hCCCC
Confidence 6566655555444433 36765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-07 Score=86.08 Aligned_cols=113 Identities=13% Similarity=0.121 Sum_probs=87.9
Q ss_pred cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 005106 397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP 476 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP 476 (714)
+++++|+.+|++|.+.++..+. +|.+|...+..++|+++ |++|.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~------------------------------~~~Aa~~-- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQY------------------------------LSKACEL-- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHH------------------------------HHHHHHT--
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHH------------------------------HHHHHcC--
Confidence 5788999999999999888777 88777766666655555 4555554
Q ss_pred CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC
Q 005106 477 TLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPD 544 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~e~Al~d~~~al~L~P~ 544 (714)
.++.+++++|.+|.. .+++++|+..|++|.+. -++.+.+++|.+|.. .+|+++|+..|++|.+....
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 567788888888888 78888888888888875 357777888888888 88888888888888887543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-07 Score=105.03 Aligned_cols=128 Identities=9% Similarity=-0.029 Sum_probs=101.5
Q ss_pred HHHhccchHHHHHHHHHHHhc-------cch---hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCh
Q 005106 392 VRLLRKEYDEAEHLFEAAVNA-------GHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (714)
Q Consensus 392 ~~~~~g~y~eA~~~f~~AL~~-------~~~---~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~ 461 (714)
.+..+|+|++|+..|+++|++ +|. .++.++|.+|..+|++++|...+.+++++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~---------------- 381 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY---------------- 381 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH----------------
Confidence 455789999999999999987 233 357789999999999999999987776653
Q ss_pred hHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-HH---HHHHHHHHHHhcCCHHHH
Q 005106 462 DKRWEDLDKATA-LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA-LE---CLELRFCFFLALEDYQAA 531 (714)
Q Consensus 462 ~eAl~d~~kAi~-LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-----~P~-~~---~~~~R~~~~~~lgd~e~A 531 (714)
.+.+. -.|+-+..|+|+|.+|..+|++++|+..|+||+++ -|+ |. ...+++.++.++|.+++|
T Consensus 382 -------~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 382 -------MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp -------HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 13444568899999999999999999999999986 454 43 345677899999999999
Q ss_pred HHHHHHHHhhC
Q 005106 532 LCDVQAILTLS 542 (714)
Q Consensus 532 l~d~~~al~L~ 542 (714)
...|+++.+-.
T Consensus 455 e~~~~~~~~~~ 465 (490)
T 3n71_A 455 EFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987643
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-07 Score=81.70 Aligned_cols=71 Identities=11% Similarity=-0.003 Sum_probs=68.4
Q ss_pred CCCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 600 DAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (714)
Q Consensus 600 ~P~~~~~~~~~g~~L~~lg~---~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~ 670 (714)
+|.+++.++.+|.+|...+. .++|...+++|++++|+++.+++.+|.+++..|+|++|+..|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 79999999999999988777 689999999999999999999999999999999999999999999999987
|
| >2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-08 Score=88.34 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=72.2
Q ss_pred hhcCCHhhHHHHHHHhhhcCChhHHHHHHHHHHhhccC--------CCChHHHHHHhccccccchhhhccchhhhHHHHH
Q 005106 280 SLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVEIFSHANRQHRSIMVGLASFSLYCLL 351 (714)
Q Consensus 280 ~~l~~~~n~l~l~~~A~~~~~~~L~~~c~~~~l~~~~~--------~L~~~~v~~ll~~~~~~~r~~~v~~~~~~~~~~l 351 (714)
+.+ +++||+.++.+|..|+++.|.+.|.+++.+||.. .|+.+++.++++++ +..|..++.+++
T Consensus 6 ~~L-~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~sd--------v~~E~~vf~av~ 76 (105)
T 2eqx_A 6 SGV-QVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDG--------VPCSQNPTEAIE 76 (105)
T ss_dssp CCC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHTC--------EETTSCHHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcCC--------CCCHHHHHHHHH
Confidence 345 4799999999999999999999999999888865 67888888899885 567889999999
Q ss_pred HHhhhcCCCCchhHHHHHHHH
Q 005106 352 SEVAMNLDPRSDKTVCFLERL 372 (714)
Q Consensus 352 ~~V~~d~~~rs~~~~~LLe~L 372 (714)
+||.+|...|..++.+||++.
T Consensus 77 ~Wv~~d~~~R~~~~~~Ll~~V 97 (105)
T 2eqx_A 77 AWINFNKEEREAFAESLRTSL 97 (105)
T ss_dssp HHHHTTHHHHHHHHHHHHHHC
T ss_pred HHHHcCHHHHHHHHHHHHHHH
Confidence 999999887888999999883
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.8e-07 Score=83.32 Aligned_cols=117 Identities=12% Similarity=0.011 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChh
Q 005106 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (714)
Q Consensus 526 gd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~ 605 (714)
+|+++|+..|+++.+..+...+ ++.+.......++ |+..|+++.+. +++.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----------lg~~y~~g~~~~~------------------A~~~~~~Aa~~--g~~~ 58 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----------LSLVSNSQINKQK------------------LFQYLSKACEL--NSGN 58 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----------HHHHTCTTSCHHH------------------HHHHHHHHHHT--TCHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----------HHHHHHcCCCHHH------------------HHHHHHHHHcC--CCHH
Confidence 4678888888888887644311 2212111122222 47778888876 7899
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 606 LYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 606 ~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
+++++|.++.. .+++++|+..|++|.+. .++++++++|.++.. .+++++|+..|++|.+.......+
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 133 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 133 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999 89999999999999987 689999999999999 999999999999999986544333
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.1e-07 Score=102.63 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=103.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCchhhhh
Q 005106 485 RASSLMTKQNVEAALAEINRILGF-----KLA-L---ECLELRFCFFLALEDYQAALCDVQAILTL-----SPDYRMFEG 550 (714)
Q Consensus 485 rg~~l~~l~r~~eAl~~~~kAL~l-----~P~-~---~~~~~R~~~~~~lgd~e~Al~d~~~al~L-----~P~~~~~~~ 550 (714)
.+..+..+|+|++|+..++++|++ -|+ + ..+.++|.+|..+|+|++|+..|++++++ .|++
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H----- 389 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN----- 389 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC-----
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC-----
Confidence 444677899999999999999986 232 3 45677899999999999999999999885 2222
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005106 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (714)
Q Consensus 551 ~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~A 630 (714)
|.-+..++|+|.++..+|++++|+..|++|
T Consensus 390 --------------------------------------------------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 390 --------------------------------------------------AQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333456889999999999999999999999
Q ss_pred HHh-----CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 631 RQH-----AASD---HERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 631 l~l-----~P~~---~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
+++ -|++ ++.+.+++.++..+|.+++|...|.+|.
T Consensus 420 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 420 YAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 975 3454 5666789999999999999999999985
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=5.6e-07 Score=85.48 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=81.6
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcC---ChHHHHHHHHHHHHhC-C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 591 SVIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg---~~eeAl~~~~~Al~l~-P-~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
..|+..++.+|.+.++.|+.|.+|.+.+ ..++|+..++..++.+ | ++.+.+|++|..+|++|+|++|....++++
T Consensus 19 ~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 19 KKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3678888999999999999999999999 5559999999999999 8 679999999999999999999999999999
Q ss_pred hcCCCHH-HHHHHHH
Q 005106 666 QMKRSFE-AFFLKAY 679 (714)
Q Consensus 666 ~i~~~~~-a~~~~~~ 679 (714)
+++|++. |-.||-.
T Consensus 99 ~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 99 QTEPQNNQAKELERL 113 (152)
T ss_dssp HHCTTCHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHH
Confidence 9999987 8777654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-06 Score=77.72 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=70.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HH
Q 005106 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AF 674 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~-------P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~ 674 (714)
++.-++.+|..+...|+++.|+.+|+.|++.. +..++.+.++|.+++.+|++++|+..+++|++++|+.. +.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46678999999999999999999999999974 45688999999999999999999999999999999998 76
Q ss_pred HHHHHH
Q 005106 675 FLKAYA 680 (714)
Q Consensus 675 ~~~~~~ 680 (714)
+++++.
T Consensus 84 ~n~~~~ 89 (104)
T 2v5f_A 84 GNLKYF 89 (104)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 777643
|
| >1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=7.2e-07 Score=78.81 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=69.9
Q ss_pred cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCC--------------C
Q 005106 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS--------------L 247 (714)
Q Consensus 183 DV~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~--------------l 247 (714)
-|+|+- +|+.|.++|.+ |..|.+++.||.+++ |.....|.|+ +|+..+++.+++|+|... .
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp--~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w 80 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELK--QFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEET--TSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecC--CcCHHHHHHHHHHHHHhcccCCCccccccCCCc
Confidence 377777 89999999997 899999999999877 6666789999 599999999999999743 2
Q ss_pred CCCCHHHHHHHHHHHhhhCh
Q 005106 248 NGVTPNLLLEILIFANKFCC 267 (714)
Q Consensus 248 ~~i~~~~v~~lL~aAd~~~v 267 (714)
. ++.+.+.+|+.||+++++
T Consensus 81 ~-vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 81 E-IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp C-CCHHHHHHHHHHHHHHCC
T ss_pred c-CCHHHHHHHHHHHHHhCc
Confidence 3 778999999999999875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.3e-06 Score=85.63 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHh-cCCHHHH
Q 005106 462 DKRWEDLDKATALDPT--LSYPYMYRASSLMTK-----QNVEAALAEINRILGFKLA--LECLELRFCFFLA-LEDYQAA 531 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~--~~~ay~~rg~~l~~l-----~r~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~-lgd~e~A 531 (714)
.+|...+++|+++||+ +..+|..+|.+|... |+.+.|...|+|||+++|+ .+.++..|..+.. +||+++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 7888999999999999 566999999999996 9999999999999999994 7878888887777 5999999
Q ss_pred HHHHHHHHhhCCCc
Q 005106 532 LCDVQAILTLSPDY 545 (714)
Q Consensus 532 l~d~~~al~L~P~~ 545 (714)
.+.+++|++.+|..
T Consensus 260 ~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 260 DEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCGGG
T ss_pred HHHHHHHHcCCCCC
Confidence 99999999999884
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00019 Score=80.70 Aligned_cols=344 Identities=5% Similarity=-0.114 Sum_probs=194.1
Q ss_pred ccchhhhHHHHHHHhhhcCCCCchhHHHHHHHHHH-hh-hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-c--c
Q 005106 340 VGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLE-SA-ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-G--H 414 (714)
Q Consensus 340 v~~~~~~~~~~l~~V~~d~~~rs~~~~~LLe~Lv~-~a-~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~-~--~ 414 (714)
+.+.+-++..+++|.-. ...+.+..++++++. +| .+-|.....+.... ....+.....|+.|+.. + +
T Consensus 11 i~~aR~vyer~l~~~P~---~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~-----~~~~~~i~~~fe~al~~vg~d~ 82 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS---KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKV-----SQKKFKLYEVYEFTLGQFENYW 82 (493)
T ss_dssp -CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH-----C----CTHHHHHHHHHHSTTCT
T ss_pred hHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHcCCCc
Confidence 67888999999998843 345677789998765 44 22333333332221 11235566788998875 2 2
Q ss_pred hhhHhhHHHHHH------HhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHh----c-------------CChhHHHHHHH
Q 005106 415 IYSIAGLARLGY------IKGHKLWAYEKLNSVISSVTPL--GWMYQERSL----Y-------------CEGDKRWEDLD 469 (714)
Q Consensus 415 ~~a~~~lg~~~~------~~G~~~~A~~~~~~aI~~~p~~--~~ay~~rg~----~-------------~~~~eAl~d~~ 469 (714)
...-....-+.+ .+|+.+.+.+.|.+||.. |.. ...|..-.. + ..+..|...|+
T Consensus 83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~ 161 (493)
T 2uy1_A 83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQ 161 (493)
T ss_dssp TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHH
Confidence 222233333333 346788899999999994 431 111111000 0 01123344445
Q ss_pred HHHhcCCC-ChHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 470 KATALDPT-LSYPYMYRASSLMTKQN---------VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 470 kAi~LdP~-~~~ay~~rg~~l~~l~r---------~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
.+...-|. ....|... +-.+.+. .+.....|+++|...|. +..|..-+..+...|+.++|..-|++|
T Consensus 162 ~~~~~~~~~s~~~W~~y--~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 162 QIQPLIRGWSVKNAARL--IDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHTCSHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHH--HHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44443333 22234332 2222222 23467789999988885 777777777778889999999999999
Q ss_pred HhhCCCchhhhhhHHHH----HHHHHHHHhhh-----------hhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCC
Q 005106 539 LTLSPDYRMFEGRVAAS----QLHMLVREHID-----------NWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAP 602 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~----~~~~~l~~~~~-----------~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~ 602 (714)
+.. |........-+.. ...+.+..... .......|.+......+.++.. |-.+|.+| ...+.
T Consensus 240 i~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~ 317 (493)
T 2uy1_A 240 IEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGV 317 (493)
T ss_dssp HHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCC
T ss_pred HhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCC
Confidence 999 8874321110000 00011111100 0001122333333222223333 56688999 33333
Q ss_pred ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 005106 603 KGVLYFRQSLLLLRLN-CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg-~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~ 681 (714)
....|...+.+....| .++.|...++++++.-|++++.+...+..+...|+.+.|-..|+++.. ...++.+-..+
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~~~lw~~~~~f 393 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK----TSRMWDSMIEY 393 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----BHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 5567777777777777 599999999999999999998777777777888999999999999832 23444444444
Q ss_pred hccCCCCCchhhHHHHHHHhhc
Q 005106 682 ADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
.-+.=|. .++-.+++.+++
T Consensus 394 E~~~G~~---~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSM---ELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCH---HHHHHHHHHHHH
T ss_pred HHHCCCH---HHHHHHHHHHHH
Confidence 4333232 334445555554
|
| >2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B | Back alignment and structure |
|---|
Probab=98.32 E-value=7.5e-07 Score=78.25 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=64.1
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHHHhhccCC-----------CCC
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LNG 249 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~-----------l~~ 249 (714)
|+|+- +|+.|.++|.+ |..|.+++.||.+ ++.|+....|.|+ +|+..+++.+++|+|... ..
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~- 78 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP- 78 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHHSCCSCCCCCC-
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCC--CCCHHHHHHHHHHHHHccccCCCcccCCCcc-
Confidence 66666 89999999997 8999999999985 3467777889999 599999999999998753 23
Q ss_pred CCHHHHHHHHHHHhhhCh
Q 005106 250 VTPNLLLEILIFANKFCC 267 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v 267 (714)
++.+.+.+|+.||+++++
T Consensus 79 vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 79 IAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCTTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 778899999999999875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.2e-06 Score=74.48 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=63.1
Q ss_pred CCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 475 DPTLSYPYMYRASSLMTKQN---VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r---~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
+|+++..+..+|.+++..+. .++|...+++||+++|+ +.++..+|..+...|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999976665 79999999999999996 8888889999999999999999999999999983
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=4.7e-06 Score=79.11 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRILGFK-L-A-LECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~---r~~eAl~~~~kAL~l~-P-~-~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
..+...|.+++..+|...++.++.|.++...+ .+++||..++.+++.+ | + .++++++|..+.++|+|++|++.+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45667789999999999999999999999999 6669999999999998 8 3 799999999999999999999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHhh
Q 005106 536 QAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (714)
Q Consensus 536 ~~al~L~P~~~~~~~~~~a~~~~~~l~~~~ 565 (714)
+++++++|++ ..+..+...++...
T Consensus 95 ~~lL~ieP~n------~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 95 RGLLQTEPQN------NQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHCTTC------HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCC------HHHHHHHHHHHHHH
Confidence 9999999999 34555555554443
|
| >3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.1e-06 Score=81.18 Aligned_cols=97 Identities=24% Similarity=0.258 Sum_probs=79.2
Q ss_pred cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHHHhhccCC-----------
Q 005106 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGS----------- 246 (714)
Q Consensus 183 DV~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~----Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~----------- 246 (714)
-|+|+- +|+.|.+++.+ |..|..++.|+...-. +.....|.|+ +|+..+|+.|++|++...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVP--NVRSSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECT--TCCHHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeC--CCCHHHHHHHHHHHHHcccCCCccccccc
Confidence 577766 78999999998 7889999999975332 2334789998 599999999999998754
Q ss_pred --------------CCCCCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 247 --------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 247 --------------l~~i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
+. ++.+.+.+|+.||++|++..|.+.|++.++.++.
T Consensus 85 ~~~~~~i~~wD~~Fl~-vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLK-VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp ---CCCCCHHHHHHTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccccHHHHHHHc-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 23 6678899999999999999999999999998875
|
| >3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.2e-06 Score=72.65 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=77.1
Q ss_pred cEEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHH
Q 005106 183 NVVFRIHEEKIECDRQKFAALS-APFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLL 256 (714)
Q Consensus 183 DV~l~v~~~~f~aHr~VLAa~S-~yF~amF~~~~~----Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~ 256 (714)
=|+|.|||+.|...+..|.... .+|.+||.++.. .....++-|. -+|..|+.+|+|+.||++. ++.+ ...
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiD---Rdp~~F~~IL~~lr~g~l~-~p~~~~~~ 82 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKLV-INKDLAEE 82 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEEC---SCHHHHHHHHHHHHHSCCC-CCTTSCHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEec---CChHHHHHHHHHhCCCeeC-CCCCCCHH
Confidence 3889999999999999998775 478999987521 1234567775 8999999999999999997 6543 357
Q ss_pred HHHHHHhhhChhhHHHHHHHHHHh
Q 005106 257 EILIFANKFCCERLKDACDRKLAS 280 (714)
Q Consensus 257 ~lL~aAd~~~v~~L~~~C~~~L~~ 280 (714)
.++.-|++|+++.|++.|.+.+..
T Consensus 83 ~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 83 GVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 899999999999999999988753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00011 Score=82.74 Aligned_cols=78 Identities=15% Similarity=0.026 Sum_probs=35.7
Q ss_pred cchHHHHHHHHHHHhc-cchhhHhhHHHHHHHhCC-HHHHHHHHHHHHhc---CCCcHHHHHHHHhcCC--------hhH
Q 005106 397 KEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGH-KLWAYEKLNSVISS---VTPLGWMYQERSLYCE--------GDK 463 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~-~~~~a~~~lg~~~~~~G~-~~~A~~~~~~aI~~---~p~~~~ay~~rg~~~~--------~~e 463 (714)
|+++.|...|++|+.. .....|..........|+ .+.....|++|+.. +++.+..|..-..+.. .+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 6777777777777765 223333332222222232 22234445555542 4555555544432211 134
Q ss_pred HHHHHHHHHhc
Q 005106 464 RWEDLDKATAL 474 (714)
Q Consensus 464 Al~d~~kAi~L 474 (714)
+...|++||..
T Consensus 108 vR~iy~rAL~~ 118 (493)
T 2uy1_A 108 IRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhC
Confidence 45556666664
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=5.6e-06 Score=91.93 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l--------~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i 667 (714)
+..++|+|.++..+|++++|+..+++|+++ .|+-+..++|+|.++..+|+++||+..|+||++|
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 355788999999999999999999999977 4566778999999999999999999999999987
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.98 E-value=4.1e-05 Score=67.19 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcc---------chhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE 454 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~---------~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~ 454 (714)
...+.+|..++..|+|..|+.+|++|++.. ....+..+|.+++++|+++.|+..+++++.+.|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 345789999999999999999999999862 34557789999999999999999988888888888888777
Q ss_pred HHhc
Q 005106 455 RSLY 458 (714)
Q Consensus 455 rg~~ 458 (714)
++.+
T Consensus 86 ~~~~ 89 (104)
T 2v5f_A 86 LKYF 89 (104)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=88.99 Aligned_cols=89 Identities=13% Similarity=0.039 Sum_probs=71.0
Q ss_pred cCChhHHHHHHHHHHh-----cCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-H---HHHHHHHH
Q 005106 458 YCEGDKRWEDLDKATA-----LDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA-L---ECLELRFC 520 (714)
Q Consensus 458 ~~~~~eAl~d~~kAi~-----LdP~~---~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-----~P~-~---~~~~~R~~ 520 (714)
++++++|+..|++|++ +.|++ +..+.|+|.+|..+|+|++|+..++|+|++ -|+ + ..++++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3445777777777766 34554 567899999999999999999999999986 233 3 34678999
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----hCCCch
Q 005106 521 FFLALEDYQAALCDVQAILT-----LSPDYR 546 (714)
Q Consensus 521 ~~~~lgd~e~Al~d~~~al~-----L~P~~~ 546 (714)
+|..+|++++|+..|++|++ +.|+++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 99999999999999999998 456663
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=6.7e-05 Score=83.09 Aligned_cols=92 Identities=8% Similarity=-0.038 Sum_probs=72.8
Q ss_pred HhccchHHHHHHHHHHHhc-------cch---hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhH
Q 005106 394 LLRKEYDEAEHLFEAAVNA-------GHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDK 463 (714)
Q Consensus 394 ~~~g~y~eA~~~f~~AL~~-------~~~---~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~e 463 (714)
..+|+|++|+..|++++++ +|. .++.++|.+|..+|++++|+..+.++++++
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~------------------ 359 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY------------------ 359 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------------
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH------------------
Confidence 3568999999999999976 232 356789999999999999999887766653
Q ss_pred HHHHHHHHH-hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005106 464 RWEDLDKAT-ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF 508 (714)
Q Consensus 464 Al~d~~kAi-~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l 508 (714)
.+.+ .-.|+-+..|+|+|.+|..+|++++|+..|+||+++
T Consensus 360 -----~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 360 -----RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp -----HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2222 223444567899999999999999999999999975
|
| >1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=3.5e-05 Score=69.50 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=63.8
Q ss_pred cEEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHHHhhccCC-----------CC
Q 005106 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LN 248 (714)
Q Consensus 183 DV~l~v-~~~~f~aHr~VLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~-----------l~ 248 (714)
-|+|+- +|..|.++|. .|..|..++.|+.+ .+.|+....|.|+ +|+..+++.|++|++... ..
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCC--CCCHHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 477774 8999999999 57899999999985 3456666789999 599999999999998643 23
Q ss_pred CCCHHHHHHHHHHHhhhCh
Q 005106 249 GVTPNLLLEILIFANKFCC 267 (714)
Q Consensus 249 ~i~~~~v~~lL~aAd~~~v 267 (714)
++.+.+.+|+.||++|+|
T Consensus 95 -vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 -IAPEIALELLMAANFLDC 112 (112)
T ss_dssp -CCHHHHHHHHHHHHHHTC
T ss_pred -cCHHHHHHHHHHHHHhCc
Confidence 788999999999999875
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=9.7e-05 Score=81.79 Aligned_cols=68 Identities=9% Similarity=-0.114 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCC
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGF-----KLA-L---ECLELRFCFFLALEDYQAALCDVQAILT-----LSPD 544 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l-----~P~-~---~~~~~R~~~~~~lgd~e~Al~d~~~al~-----L~P~ 544 (714)
+..+.++|.+|..+|++++|+..++|+|++ -|+ | ..++++|.+|..+|++++|+..|++|++ +.|+
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999999976 233 4 3457799999999999999999999998 5677
Q ss_pred ch
Q 005106 545 YR 546 (714)
Q Consensus 545 ~~ 546 (714)
++
T Consensus 409 Hp 410 (429)
T 3qwp_A 409 HS 410 (429)
T ss_dssp SH
T ss_pred Ch
Confidence 64
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00012 Score=67.23 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=81.4
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHH---HHHHHHHHHHhC-C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEA---AMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (714)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee---Al~~~~~Al~l~-P-~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~ 666 (714)
-|+.++..++.+.++.|+.|.+|.+-+.+.+ ++..++..++-+ | ..-+.+|++|...|++|+|++|....+..++
T Consensus 23 ~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 23 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5778888899999999999999999998888 999999999988 5 6889999999999999999999999999999
Q ss_pred cCCCHH-HHHHHHHH
Q 005106 667 MKRSFE-AFFLKAYA 680 (714)
Q Consensus 667 i~~~~~-a~~~~~~~ 680 (714)
++|++. |.-||...
T Consensus 103 ~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 103 TEPQNNQAKELERLI 117 (126)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHH
Confidence 999987 88887654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0014 Score=60.05 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEA---ALAEINRILGFK-L-A-LECLELRFCFFLALEDYQAALCDV 535 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~e---Al~~~~kAL~l~-P-~-~~~~~~R~~~~~~lgd~e~Al~d~ 535 (714)
..+-..|.++...++....+-++.|.++...++..+ +|..+...+.-+ | . -++++.+|..+.++|+|++|++.+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445567888888899999999999999999998887 999999999877 6 2 588899999999999999999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHh
Q 005106 536 QAILTLSPDYRMFEGRVAASQLHMLVREH 564 (714)
Q Consensus 536 ~~al~L~P~~~~~~~~~~a~~~~~~l~~~ 564 (714)
+.+|+.+|++ ..|..+...+...
T Consensus 98 ~~lL~~eP~n------~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 98 RGLLQTEPQN------NQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred HHHHHhCCCC------HHHHHHHHHHHHH
Confidence 9999999999 3455555555443
|
| >3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00087 Score=66.20 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=76.0
Q ss_pred EEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCC--C--cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALS-APFSAMLNGSF--M--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S-~yF~amF~~~~--~--Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~~ 257 (714)
|+|.|||..|...+..|.... .+|..||.+.. . .....++-|. -+|..|+.||+|+.+|++. ++.+ ....
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFID---RDP~~F~~ILnyLRtG~L~-lP~~~~~~~ 89 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKLV-INKDLAEEG 89 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEEC---SCSTTHHHHHHHHHHSCCC-CCTTSCHHH
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEec---CChHHHHHHHHHhcCCccC-CCCCCCHHH
Confidence 789999999999999998664 38899998642 1 1123567675 7899999999999999998 6543 3467
Q ss_pred HHHHHhhhChhhHHHHHHHHHHhh
Q 005106 258 ILIFANKFCCERLKDACDRKLASL 281 (714)
Q Consensus 258 lL~aAd~~~v~~L~~~C~~~L~~~ 281 (714)
++.-|++|+|+.|++.|.+.+...
T Consensus 90 l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 90 VLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHH
Confidence 999999999999999999988643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.022 Score=53.08 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=71.8
Q ss_pred CCChhHHHHHHHHHHHcCChH---HHHHHHHHHHHhCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 005106 601 APKGVLYFRQSLLLLRLNCPE---AAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF 675 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~e---eAl~~~~~Al~l~P-~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~ 675 (714)
+-++...|+.|.+|.+-+..+ +++..++..++-.| +.-+-+|+++..+|++|+|++|...-+..++++|++. |--
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 678999999999999977665 79999999999998 5789999999999999999999999999999999987 777
Q ss_pred HHHHH
Q 005106 676 LKAYA 680 (714)
Q Consensus 676 ~~~~~ 680 (714)
||...
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.22 Score=55.85 Aligned_cols=163 Identities=12% Similarity=0.050 Sum_probs=96.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHh--hCCCchhhhhhH
Q 005106 486 ASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLAL---------EDYQAALCDVQAILT--LSPDYRMFEGRV 552 (714)
Q Consensus 486 g~~l~~l~r~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~l---------gd~e~Al~d~~~al~--L~P~~~~~~~~~ 552 (714)
=..+.+.|+.++|+..|++..+ +.|+...|...-.++... |+.++|.+-|+...+ +.|+-..|..-.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3455566666666666666654 345544444333333322 235566666665544 335432211111
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 553 ~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~-P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
.++ ....++++ |+.++++|.+.. +-+...|+..=..+.+.|+.++|++.++...
T Consensus 113 ~~~-------~~~g~~~~------------------A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 113 RLA-------VAKDDPEM------------------AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHH-------HHHTCHHH------------------HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH-------HhcCCHHH------------------HHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111 11122222 255566655542 2245666667777888999999999999877
Q ss_pred Hh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHH
Q 005106 632 QH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSFEAF 674 (714)
Q Consensus 632 ~l--~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~--i~~~~~a~ 674 (714)
+. .|+ ...+..+=.++.+.|+.++|...+++--+ ++|+-..|
T Consensus 168 ~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 168 ESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp HTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred hcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 64 444 55777777788999999999999998665 57877655
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.14 Score=57.45 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=110.8
Q ss_pred HHHHhccchHHHHHHHHHHHhcc--c-hhhHhhHHHHHHHh---------CCHHHHHHHHHHHHhcC-CCcHHHHHHH--
Q 005106 391 CVRLLRKEYDEAEHLFEAAVNAG--H-IYSIAGLARLGYIK---------GHKLWAYEKLNSVISSV-TPLGWMYQER-- 455 (714)
Q Consensus 391 ~~~~~~g~y~eA~~~f~~AL~~~--~-~~a~~~lg~~~~~~---------G~~~~A~~~~~~aI~~~-p~~~~ay~~r-- 455 (714)
..+...|++++|.+.|++..+.+ | ...|.-+-.++... |+.+.|.+.|++..... +++...|...
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~ 113 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR 113 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34467899999999999987764 2 22233232233322 33678888888777652 1233333222
Q ss_pred --HhcCChhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHH
Q 005106 456 --SLYCEGDKRWEDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQ 529 (714)
Q Consensus 456 --g~~~~~~eAl~d~~kAi~L--dP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~--l~P~~~~~~~R~~~~~~lgd~e 529 (714)
+..++.++|+..|++..+. .| +...|+.+-..|.+.|+.++|...|++..+ +.|+...|...-.+|.+.|+.+
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHH
Confidence 3345559999999877664 45 467899999999999999999999999887 4678777777888899999999
Q ss_pred HHHHHHHHHHh--hCCCch
Q 005106 530 AALCDVQAILT--LSPDYR 546 (714)
Q Consensus 530 ~Al~d~~~al~--L~P~~~ 546 (714)
+|.+.+++.-+ ..|+-.
T Consensus 193 ~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 193 KVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHHHHHHHHHHHTSSBCHH
T ss_pred HHHHHHHHHHHhCCCcCHH
Confidence 99999998766 557653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=1.9 Score=49.67 Aligned_cols=283 Identities=10% Similarity=-0.039 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhH
Q 005106 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDK 463 (714)
Q Consensus 384 ~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~e 463 (714)
...+.-+...+..|++..+...-. .+.-.|...|...-.+...++.. ....+...|..+|+.+.+-.-|..+ .+
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~-~l~~~pL~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~---l~ 80 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMP-GLKDYPLYPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRF---VN 80 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSG-GGTTSTTHHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-hhcCCCcHHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHH---HH
Confidence 344555566667777766654322 22223443333322223322321 2336677888899888776666544 22
Q ss_pred HHH---HHHHHHh---cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCH----------------HHHHHH
Q 005106 464 RWE---DLDKATA---LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK---LAL----------------ECLELR 518 (714)
Q Consensus 464 Al~---d~~kAi~---LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~---P~~----------------~~~~~R 518 (714)
++. +....++ -.|.....-.+.+.++...|+-.+|.+...++.--- |+. +.+..|
T Consensus 81 ~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R 160 (618)
T 1qsa_A 81 ELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLER 160 (618)
T ss_dssp HHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 221 2222222 247888888899999999999999988888877542 221 112223
Q ss_pred HHHHHhcCCHHHHHHHHHH-------------HHhhCCCchhhhhh------H-HHHHHHHHHHHhhhhhhHHHH-----
Q 005106 519 FCFFLALEDYQAALCDVQA-------------ILTLSPDYRMFEGR------V-AASQLHMLVREHIDNWTIADC----- 573 (714)
Q Consensus 519 ~~~~~~lgd~e~Al~d~~~-------------al~L~P~~~~~~~~------~-~a~~~~~~l~~~~~~~~~A~~----- 573 (714)
.......|+...|...... ++.-+|........ . ......+..+...++.+.|..
T Consensus 161 ~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~ 240 (618)
T 1qsa_A 161 IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSL 240 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 3445556666555443322 33344543221100 0 000001111111222222211
Q ss_pred --------------HHhhhhcccccc-ccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005106 574 --------------WLQLYDRWSSVD-DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 574 --------------~~~l~~~~~~~~-d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
|..+.-.....+ +.++...++++....+.+....+..+.+| +.|+++.|...+++.-.-.++..
T Consensus 241 ~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~ 319 (618)
T 1qsa_A 241 AQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTGDRRGLNTWLARLPMEAKEKD 319 (618)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSH
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-HCCCHHHHHHHHHHccccccccH
Confidence 111111212223 44466677777765555544445555554 67999999999987666555678
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
.+.|.+|-++..+|+-++|-..|+++.. .++|=.+
T Consensus 320 r~~YW~~ra~~~~g~~~~a~~~~~~~a~-~~~fYg~ 354 (618)
T 1qsa_A 320 EWRYWQADLLLERGREAEAKEILHQLMQ-QRGFYPM 354 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCSHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCChHHH
Confidence 8899999999999999999999999987 5677443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.022 Score=52.49 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=69.7
Q ss_pred CCChhHHHHHHHHHHHcCChH---HHHHHHHHHHHhCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHH
Q 005106 601 APKGVLYFRQSLLLLRLNCPE---AAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFF 675 (714)
Q Consensus 601 P~~~~~~~~~g~~L~~lg~~e---eAl~~~~~Al~l~P-~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~ 675 (714)
--++.+.|+.|.+|.+-+..+ .++..++..++.+| ..-+-+++++...|++|+|++|...-++.++++|++. |--
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 346789999999999977663 69999999999999 4689999999999999999999999999999999998 777
Q ss_pred HHHH
Q 005106 676 LKAY 679 (714)
Q Consensus 676 ~~~~ 679 (714)
||..
T Consensus 117 Lk~~ 120 (134)
T 3o48_A 117 LKSM 120 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.16 Score=47.22 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=70.5
Q ss_pred CCCChHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 005106 475 DPTLSYPYMYRASSLMTKQNVE---AALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (714)
Q Consensus 475 dP~~~~ay~~rg~~l~~l~r~~---eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~ 549 (714)
++-.+..-++.|-++...++.+ ++|..+...+.-.|. -++++.++..+.++|+|++|.+..+..|+.+|+|
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n---- 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---- 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC----
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc----
Confidence 4667889999999999888755 799999999988884 6899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh
Q 005106 550 GRVAASQLHMLVREH 564 (714)
Q Consensus 550 ~~~~a~~~~~~l~~~ 564 (714)
..|..+...++..
T Consensus 111 --~QA~~Lk~~Ie~~ 123 (144)
T 1y8m_A 111 --KQVGALKSMVEDK 123 (144)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 3455555555444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.073 Score=49.02 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 005106 478 LSYPYMYRASSLMTKQNV---EAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (714)
Q Consensus 478 ~~~ay~~rg~~l~~l~r~---~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~ 552 (714)
.+.+-++.|-++...+.. .++|..+...+.-.|. -++++.++..+.++|+|++|.+..+++++.+|+| .
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N------~ 112 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN------K 112 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC------H
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC------H
Confidence 467888888888887765 4789999999988884 6899999999999999999999999999999999 4
Q ss_pred HHHHHHHHHHHhhh
Q 005106 553 AASQLHMLVREHID 566 (714)
Q Consensus 553 ~a~~~~~~l~~~~~ 566 (714)
.|..+...++..+.
T Consensus 113 QA~~Lk~~Ie~ki~ 126 (134)
T 3o48_A 113 QVGALKSMVEDKIQ 126 (134)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46666665555544
|
| >1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.013 Score=53.62 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=64.5
Q ss_pred cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCC----CcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHHH
Q 005106 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSF----MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (714)
Q Consensus 183 DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~----~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~~ 257 (714)
=|+|.|||..|..-+..|.... .+||...- ......++-|. =++..|+.||+|+.||++. ++.+ .+..
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnflR~G~l~-~p~~~~~~~ 86 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLH-YPRYECISA 86 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEEC---SCHHHHHHHHHHHHHSCBC-CCTTSCHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEEc---CChHHHHHHHHHHhcCCCC-CCCCcCHHH
Confidence 3889999999999999997542 23454311 11234566665 6999999999999999997 6554 4788
Q ss_pred HHHHHhhhChhhHH-HHHH
Q 005106 258 ILIFANKFCCERLK-DACD 275 (714)
Q Consensus 258 lL~aAd~~~v~~L~-~~C~ 275 (714)
++.-|++|+|+.+. +.|+
T Consensus 87 l~~Ea~fy~i~~l~l~~cC 105 (124)
T 1s1g_A 87 YDDELAFYGILPEIIGDCC 105 (124)
T ss_dssp HHHHHHHTTCCGGGBCHHH
T ss_pred HHHHHHHcCCChHHHHHHH
Confidence 99999999999873 4443
|
| >3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.014 Score=52.68 Aligned_cols=84 Identities=10% Similarity=0.124 Sum_probs=65.5
Q ss_pred EEEEEcCeEEEeehhhhhcCC-HHHHHhhcCCC-CcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALS-APFSAMLNGSF-MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILI 260 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S-~yF~amF~~~~-~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~~lL~ 260 (714)
|+|.|||..|...+..|.... ..+.+||.+.. ......++-|. -+|..|+.+|+|+.||++. ++.+ .+..++.
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnylR~G~l~-~p~~~~~~~~~~ 82 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD---RHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE 82 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC---SCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEe---cChHHHHHHHHHhcCCCCC-CCCcccHHHHHH
Confidence 889999999999999998663 24566766422 12334667776 7899999999999999997 6543 4678999
Q ss_pred HHhhhChhhHH
Q 005106 261 FANKFCCERLK 271 (714)
Q Consensus 261 aAd~~~v~~L~ 271 (714)
-|++|+|+...
T Consensus 83 Ea~fy~i~~~~ 93 (115)
T 3kvt_A 83 ELEFWGLDSNQ 93 (115)
T ss_dssp HHHHHTCCGGG
T ss_pred HHHHhCCChHH
Confidence 99999999754
|
| >1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0089 Score=52.99 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=63.6
Q ss_pred EEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEI 258 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~----Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~~l 258 (714)
|+|.|||+.|...+..|..... +||....+ .....++-|. =+|..|+.+|+|+.||++. ++++ .+..+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~FiD---Rdp~~F~~ILnflR~g~l~-~p~~~~~~~l 74 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKLH-YPRHECISAY 74 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEEe---CCcHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 7899999999999999975432 34544111 1233566675 6899999999999999997 6543 47889
Q ss_pred HHHHhhhChhhHH-HHHH
Q 005106 259 LIFANKFCCERLK-DACD 275 (714)
Q Consensus 259 L~aAd~~~v~~L~-~~C~ 275 (714)
+.-|++|+++.+. ..|+
T Consensus 75 ~~Ea~fy~i~~l~~~~cc 92 (105)
T 1nn7_A 75 DEELAFFGLIPEIIGDCC 92 (105)
T ss_dssp HHHHHHHTCCSCCBCHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 9999999999863 4444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.87 Score=49.18 Aligned_cols=75 Identities=8% Similarity=-0.082 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCHHHHHHHHHH
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI-------QMKRSFEAFFLKAYA 680 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai-------~i~~~~~a~~~~~~~ 680 (714)
..++.++..+|++++|+..++++++.+|-+-.++..+=.+|+..|+..+|++.|++.- .+.|+-+---+-.-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~i 254 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 254 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3466778899999999999999999999999999999999999999999999998864 468888833333333
Q ss_pred hh
Q 005106 681 LA 682 (714)
Q Consensus 681 ~~ 682 (714)
|.
T Consensus 255 l~ 256 (388)
T 2ff4_A 255 LR 256 (388)
T ss_dssp HT
T ss_pred Hc
Confidence 43
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.11 Score=49.68 Aligned_cols=113 Identities=9% Similarity=-0.092 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhc--cchh---------hHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHH
Q 005106 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIY---------SIAGLARLGYIKGHKLWAYEKLNSVISSVTP---LGW 450 (714)
Q Consensus 385 A~~~lG~~~~~~g~y~eA~~~f~~AL~~--~~~~---------a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~---~~~ 450 (714)
+++.-....++.|.|+.|+-..+.++.. ++.+ ++.++|.+++.+|+|..|...|.+||..... ...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445556677888899998888887766 2223 5678888999999999999999888776321 111
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI 505 (714)
Q Consensus 451 ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kA 505 (714)
++-..|.. ..+-..+.+ +...+.-+..|.+++++|++++||..++.+
T Consensus 102 ~~~~~~~~-------ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNS-------ASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccccc-------CCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11000100 001111223 456678888999999999999999987653
|
| >2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.018 Score=53.67 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=64.2
Q ss_pred cEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHHH
Q 005106 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (714)
Q Consensus 183 DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~----Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~~ 257 (714)
=|+|.|||..|...+..|.... .+||...-+ .....++-|. =++..|+.||+|+.||++. ++.+ .+..
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFiD---Rdp~~F~~ILnflR~G~l~-~p~~~~~~~ 108 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLH-YPRYECISA 108 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEEC---SCHHHHHHHHHHHHHSSBC-CCTTSCHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEEe---CCcHHHHHHHHHHhcCCcC-CCCCcCHHH
Confidence 4889999999999999997542 345544111 1234567775 6999999999999999997 6544 4788
Q ss_pred HHHHHhhhChhhH-HHHH
Q 005106 258 ILIFANKFCCERL-KDAC 274 (714)
Q Consensus 258 lL~aAd~~~v~~L-~~~C 274 (714)
++.-|++|+|+.+ ++.|
T Consensus 109 l~eEa~fy~i~~l~l~~C 126 (140)
T 2nz0_B 109 YDDELAFYGILPEIIGDC 126 (140)
T ss_dssp HHHHHHHHTCCGGGBCTT
T ss_pred HHHHHHHcCCChHHHHHH
Confidence 9999999999987 3444
|
| >1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.023 Score=49.84 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=61.3
Q ss_pred EEEEEcCeEEEeehhhhhcCCH-HHHHhhcC-CCCcCCcceEEeCCCCCCHHHHHHHHHhhcc-CCCCCCCHH-HHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNG-SFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPN-LLLEIL 259 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S~-yF~amF~~-~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Yt-g~l~~i~~~-~v~~lL 259 (714)
|+|.|||..|...+..|...-. .+-+||.+ ........++-|. -+|..|+.+|+|+.| |++. ++++ .+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiD---Rdp~~F~~ILnflR~~G~l~-~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD---RNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC---SCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEc---CChHHHHHHHHHHhcCCccc-CCCCCCHHHHH
Confidence 7899999999999999964421 23333332 1111234677775 789999999999999 8987 5443 578899
Q ss_pred HHHhhhChhhHH
Q 005106 260 IFANKFCCERLK 271 (714)
Q Consensus 260 ~aAd~~~v~~L~ 271 (714)
.-|++|+++.+.
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999998744
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.11 Score=49.54 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhcCCCCh---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CC---------------
Q 005106 462 DKRWEDLDKATALDPTLS---------YPYMYRASSLMTKQNVEAALAEINRILGFK------LA--------------- 511 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~---------~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~------P~--------------- 511 (714)
+.|+...+.++.+..++. ..+...|.++...|+|..|...|++||.+. |+
T Consensus 37 ~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~ 116 (167)
T 3ffl_A 37 SNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQ 116 (167)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccc
Confidence 666555555544443333 478899999999999999999999998762 11
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 512 -----LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 512 -----~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
.+.-+..+.||.++|++++|+.-.+.+
T Consensus 117 ~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 117 CLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 134455678999999999999987664
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.54 Score=48.34 Aligned_cols=129 Identities=13% Similarity=0.052 Sum_probs=89.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhh
Q 005106 487 SSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (714)
Q Consensus 487 ~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~ 565 (714)
..+.+.|+.++|++.....|+-+|. .+.-.....++.-.|+|+.|+.-++.+.+++|++.. .+...+.+++...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~-----~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP-----GASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH-----HHHHHHHHHHHHH
Confidence 3567789999999999999999995 665566778899999999999999999999999842 2323344444443
Q ss_pred hhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005106 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
.+-+-.. ....-.-++ +|..-....-.++.....|+.++|.+.-.+|++..|..+
T Consensus 80 ~R~~vfa-------G~~~P~~~g-----------~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 80 ARKDFAQ-------GAATAKVLG-----------ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHTT-------SCCCEECCC-----------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHc-------CCCCCCCCC-----------CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 3333221 111111111 122223334456677888999999999999999998754
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.58 Score=50.61 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
...++.++..+|++++|+..+.++++.+|- -..+..+-.++...|+..+|++.|++.-+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677788888888888888888888884 44555556678888888888888877544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.92 E-value=0.59 Score=43.98 Aligned_cols=115 Identities=9% Similarity=-0.104 Sum_probs=73.1
Q ss_pred CCC-HHHHHHHHHHHHhcCCH------HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcc
Q 005106 509 KLA-LECLELRFCFFLALEDY------QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (714)
Q Consensus 509 ~P~-~~~~~~R~~~~~~lgd~------e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~ 581 (714)
.|+ ++.|..-.....+.|+. +.-+..|++|+.--|-...-..+.=+.-. =....|
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LW-----------IrYA~~------- 70 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQ-----------VRFAEL------- 70 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHH-----------HHHHHH-------
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHH-----------HHHHHH-------
Confidence 553 66665555555555666 66667777777766543211111111110 001111
Q ss_pred ccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005106 582 SSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (714)
Q Consensus 582 ~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (714)
....|.+ +-.+|+.|+.+....+..|...|..-.+.|....|...+.+|+.+.|...+.+
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 1112222 47789999999999999999999999999999999999999999999877653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.71 E-value=2.6 Score=48.55 Aligned_cols=47 Identities=9% Similarity=-0.131 Sum_probs=31.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 488 SLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 488 ~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
...++|++++|+...+. -.+...|...|..+.+.|+++.|+++|.++
T Consensus 661 ~~l~~~~~~~A~~~~~~----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHh----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44567777777765432 124666777777777778888888777765
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.75 Score=43.29 Aligned_cols=102 Identities=11% Similarity=-0.021 Sum_probs=55.3
Q ss_pred HhccchhhHhhHHHHHHHhCCH------HHHHHHHHHHHhcCCCcH--------HHHHHHH---hcCChhHHHHHHHHHH
Q 005106 410 VNAGHIYSIAGLARLGYIKGHK------LWAYEKLNSVISSVTPLG--------WMYQERS---LYCEGDKRWEDLDKAT 472 (714)
Q Consensus 410 L~~~~~~a~~~lg~~~~~~G~~------~~A~~~~~~aI~~~p~~~--------~ay~~rg---~~~~~~eAl~d~~kAi 472 (714)
+..+..+.|..........|+. +.-++.|++||..-|+.. ..|.+-+ ...+.++|...|+.|+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3445555555555555555666 555666777776665421 1111000 0122355566666666
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~ 511 (714)
.+...++..|...|.--.++|+...|...+.+||++.|.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 666666666666666666666666666666666666664
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.3 Score=57.45 Aligned_cols=60 Identities=17% Similarity=0.018 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 662 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye 662 (714)
...+..-++.-|...|+++-|+...++|....|++=..++.++.+|..+|+||.|+-...
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 345777788888999999999999999999999999999999999999999999995543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=2.9 Score=48.14 Aligned_cols=237 Identities=11% Similarity=-0.025 Sum_probs=140.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHH---H--hc-CC-hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 005106 422 ARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQER---S--LY-CE-GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ 493 (714)
Q Consensus 422 g~~~~~~G~~~~A~~~~~~aI~~~p-~~~~ay~~r---g--~~-~~-~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~ 493 (714)
+.......+.+.|...+.+.....+ +.......+ + .. .. ..++...+.++....++....-...+.++ ..|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-HCC
Confidence 4445556677888777766543221 212211111 1 11 11 35666677776655444433333334454 569
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 005106 494 NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 572 (714)
Q Consensus 494 r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~ 572 (714)
+++.|...|++.-.-.++ +...+-+|.++..+|+.++|...|+++.. +. .|||..++..+... ...
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~lAa~~Lg~~-------~~~-- 366 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMVAAQRIGEE-------YEL-- 366 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHHHHHHTTCC-------CCC--
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHHHHHHcCCC-------CCC--
Confidence 999999999876543223 55567788889999999999999999986 33 36776555443210 000
Q ss_pred HHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 005106 573 CWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (714)
Q Consensus 573 ~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G 652 (714)
......... ...+..+| -+.++..|..+|...+|..-.+.+++.. +.+-...++.+....|
T Consensus 367 -------~~~~~~~~~-----~~~~~~~~-----~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~ 427 (618)
T 1qsa_A 367 -------KIDKAPQNV-----DSALTQGP-----EMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQ 427 (618)
T ss_dssp -------CCCCCCSCC-----CCHHHHSH-----HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTT
T ss_pred -------CCCCCChhH-----HhhhccCh-----HHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCC
Confidence 000000000 01122222 3577888999999999999888887643 2344557788888899
Q ss_pred CHHHHHHHHHHHHhcC------C--------------CHHHHHHHHHHhhccCCCCCch
Q 005106 653 HCEEGLRKAEESIQMK------R--------------SFEAFFLKAYALADSSQDSSCS 691 (714)
Q Consensus 653 ~~eeAl~~ye~Ai~i~------~--------------~~~a~~~~~~~~~~~~~~~~~~ 691 (714)
.++.++....++-..+ | .....++.|++.-.|+.||..-
T Consensus 428 ~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 428 WWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp CHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred ChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 9998886655432221 1 1223466777888888887543
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.34 E-value=2.9 Score=40.10 Aligned_cols=115 Identities=17% Similarity=0.088 Sum_probs=84.5
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCchhh
Q 005106 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT----LSPDYRMF 548 (714)
Q Consensus 474 LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~----L~P~~~~~ 548 (714)
|-|..++.-+-++.++.-.|.|..|+-.+. +.+ ....+....+|..++||..|+...+.+++ -||+-.
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d-- 100 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD-- 100 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC--
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc--
Confidence 456666777888999999999888876543 333 55567788999999999999999999994 335420
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH-HHHHHHHHHcCChHHHHHHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY-FRQSLLLLRLNCPEAAMRSL 627 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~-~~~g~~L~~lg~~eeAl~~~ 627 (714)
++ -+..-+||++-+.+ ...|.++...|..+||++.+
T Consensus 101 ----------------------~~---------------------~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~ 137 (242)
T 3kae_A 101 ----------------------AR---------------------IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY 137 (242)
T ss_dssp ----------------------HH---------------------HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------cc---------------------cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence 11 12233568887764 55799999999999999999
Q ss_pred HHHHHhCCCCh
Q 005106 628 QLARQHAASDH 638 (714)
Q Consensus 628 ~~Al~l~P~~~ 638 (714)
.+...+.|-.+
T Consensus 138 ~~Sf~~~~lf~ 148 (242)
T 3kae_A 138 VRSFGKSFLFS 148 (242)
T ss_dssp HHHHHHCCCHH
T ss_pred hhhcCCccccc
Confidence 99999998543
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.08 E-value=0.79 Score=51.38 Aligned_cols=70 Identities=14% Similarity=-0.073 Sum_probs=41.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 609 ~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
++|.+-...+..+.|...|++|+.++|+++..++.+|.+....|+.-+|+=.|-||+.-...|+ |.-|-.
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~ 227 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHH
Confidence 3455544455556666666666666666666666666666666666666666666666544444 444333
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.85 E-value=11 Score=40.93 Aligned_cols=90 Identities=14% Similarity=-0.005 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-chhhhhhHHH
Q 005106 483 MYRASSLMTKQNVEAALAEINRILGF----KLA---LECLELRFCFFLALEDYQAALCDVQAILTLSPD-YRMFEGRVAA 554 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~l----~P~---~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~-~~~~~~~~~a 554 (714)
.++|..|.+.|+|.+|+..+++.+.- +.. .+.+.....+|..+|++..+.+.|.+|.+.... +..-..++..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47999999999999999999998873 222 233444556899999999999999999876411 1111223444
Q ss_pred HHHHHHHHH-hhhhhhHHH
Q 005106 555 SQLHMLVRE-HIDNWTIAD 572 (714)
Q Consensus 555 ~~~~~~l~~-~~~~~~~A~ 572 (714)
....|.... ..++|..|.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~ 201 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAF 201 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHH
T ss_pred HHHhhHHHHHhccCHHHHH
Confidence 555555555 577888773
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.39 E-value=0.95 Score=53.23 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=41.8
Q ss_pred CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI 505 (714)
Q Consensus 459 ~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kA 505 (714)
++++-|+..-.+|+.+-|....+|+.++.+|..+|+|+.|+-.+|-.
T Consensus 351 ~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 351 GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34488898899999999999999999999999999999999888764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=86.21 E-value=8.8 Score=44.09 Aligned_cols=110 Identities=9% Similarity=-0.051 Sum_probs=60.4
Q ss_pred HHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHH
Q 005106 393 RLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT 472 (714)
Q Consensus 393 ~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi 472 (714)
..+.|++++|.+.. -.++....|..+|..+.+.|+++.|.+.|.++ +++ +.+...|..
T Consensus 662 ~l~~~~~~~A~~~~---~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~--------------~d~---~~l~~l~~~-- 719 (814)
T 3mkq_A 662 ALKVGQLTLARDLL---TDESAEMKWRALGDASLQRFNFKLAIEAFTNA--------------HDL---ESLFLLHSS-- 719 (814)
T ss_dssp HHHHTCHHHHHHHH---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------TCH---HHHHHHHHH--
T ss_pred hhhcCCHHHHHHHH---HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc--------------cCh---hhhHHHHHH--
Confidence 34566777766543 23455667777888888888888887776532 111 222222211
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005106 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 473 ~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
..+..-+..+|.+....|+++.|...|-+. . ++ .....+|.+++++++|+.-
T Consensus 720 ---~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~---g-~~---~~a~~~~~~~~~~~~A~~l 771 (814)
T 3mkq_A 720 ---FNNKEGLVTLAKDAETTGKFNLAFNAYWIA---G-DI---QGAKDLLIKSQRFSEAAFL 771 (814)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---T-CH---HHHHHHHHHTTCHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHcCchHHHHHHHHHc---C-CH---HHHHHHHHHcCChHHHHHH
Confidence 334455556666666677766665554331 0 11 1122355666666666653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.95 E-value=13 Score=45.77 Aligned_cols=135 Identities=13% Similarity=0.028 Sum_probs=85.7
Q ss_pred HHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHhcCChhHHHHHHHH
Q 005106 392 VRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV-TPLGWMYQERSLYCEGDKRWEDLDK 470 (714)
Q Consensus 392 ~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~-p~~~~ay~~rg~~~~~~eAl~d~~k 470 (714)
.....+.++-|.+ +..=+..++. .-+-+|+++...|++++|+..|.+|..-- .... .. ...........
T Consensus 821 ~l~~~~~~~~~~~-l~~~~~~~~~-~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~-------l~-~~~~~~~~~~~ 890 (1139)
T 4fhn_B 821 KLFLFKQYNACMQ-LIGWLNSDPI-AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS-------QF-AVLREFQEIAE 890 (1139)
T ss_dssp HHHHHSCTTHHHH-HHHHSCCCHH-HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCC-------SC-SSHHHHHHHHH
T ss_pred HHHHhhhHHHHHH-HhhhccCCcH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccch-------hh-hhhcccccccc
Confidence 3444566655543 2222222333 34668999999999999999999875421 1100 00 00112222233
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-H----HHHHHHHHHHHhcCCHHHHHHHHH
Q 005106 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A-L----ECLELRFCFFLALEDYQAALCDVQ 536 (714)
Q Consensus 471 Ai~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P-~-~----~~~~~R~~~~~~lgd~e~Al~d~~ 536 (714)
........+..|.....++-+.|.++.++.....||+..+ + . ..|.+....+..+|+|++|-....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3334445567788888889999999999999999999754 3 2 245556678999999999976554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.39 E-value=2.2 Score=43.79 Aligned_cols=60 Identities=15% Similarity=-0.023 Sum_probs=53.5
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 613 ~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
-+++-|..++|+......++-+|.|++....+-..|.-.|+++.|....+-+..++|++.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 456778899999999999999999999999999999999999999999999999999888
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 714 | ||||
| d1r29a_ | 122 | d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB | 4e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 | |
| d1buoa_ | 121 | d.42.1.1 (A:) Promyelocytic leukaemia zinc finger | 4e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.004 |
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 4e-05
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRI 237
+L +VV + E+ + A S F ++ +L I+P G I
Sbjct: 22 RDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLD--PEINPEGFNI 79
Query: 238 ISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
+ DF T LN + ++ ++ A E + D C + + +
Sbjct: 80 LLDFMYTSRLN-LREGNIMAVMATAMYLQMEHVVDTCRKFIKA 121
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 6e-05
Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 6/144 (4%)
Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAV--NAGHIYSIAGLARLGY 426
+ L + + L CV + D A + A+ + LA
Sbjct: 223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 282
Query: 427 IKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED----LDKATALDPTLSYPY 482
KG A + N+ + + E+ KA + P + +
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 483 MYRASSLMTKQNVEAALAEINRIL 506
AS L + ++ AL +
Sbjct: 343 SNLASVLQQQGKLQEALMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 0.001
Identities = 36/333 (10%), Positives = 82/333 (24%), Gaps = 18/333 (5%)
Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAV--NAGHIYSIAGLARL-- 424
++ + L + + D + H A+ N + + L +
Sbjct: 19 ERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78
Query: 425 ---GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYP 481
+ + + + + + +
Sbjct: 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138
Query: 482 YMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541
+ EA + I C F A + A+ + +TL
Sbjct: 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198
Query: 542 SPDY---RMFEGRVAASQ------LHMLVREHIDNWTIADCWLQLYDRWSSVDDI-GSLS 591
P++ + G V + +R + A L + I ++
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258
Query: 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 651
+ +E Y + L A A + + + L I +
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318
Query: 652 SHCEEGLRKAEESIQMKRSF-EAFFLKAYALAD 683
+ EE +R +++++ F A A L
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (89), Expect = 4e-04
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRI 237
L +VV + ++ R A S F + + + + + P +
Sbjct: 25 AGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLS-------PKTFQQ 77
Query: 238 ISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281
I +++ T +L L ++L A E L++ C + L ++
Sbjct: 78 ILEYAYTATLQ-AKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.004
Identities = 33/301 (10%), Positives = 77/301 (25%), Gaps = 8/301 (2%)
Query: 388 QLGCVRLLRKEYDEAEHLFEAAV--NAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV 445
+ G RL + A LFEAAV + H+ + L +L A L +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 446 TPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI 505
++ + + + Y + + +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 506 LGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI 565
LE++ F A+ ++ E A +
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM- 624
+++ + + + ++ ++ + LE + + + L A+
Sbjct: 204 NDYLLWNKLGATLANGNQSEEA--VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261
Query: 625 ---RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681
+L + R+ E I L +++ + L + L
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGL 321
Query: 682 A 682
Sbjct: 322 P 322
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 714 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1r29a_ | 122 | B-cell lymphoma 6 (Bcl6) protein BTB domain {Human | 99.86 | |
| d1buoa_ | 121 | Promyelocytic leukaemia zinc finger (PLZF) protein | 99.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.85 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.81 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.68 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.67 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.67 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.62 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.6 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.58 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.53 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.53 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.48 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.42 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.42 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.39 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.39 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.39 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.38 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.38 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.35 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.35 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.34 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.33 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.32 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.31 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.27 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.17 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.12 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.1 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.03 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.95 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.84 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.74 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.67 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.03 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.87 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.66 | |
| d2c9wc1 | 96 | Elongin C {Human (Homo sapiens) [TaxId: 9606]} | 97.66 | |
| d1hv2a_ | 99 | Elongin C {Baker's yeast (Saccharomyces cerevisiae | 97.29 | |
| d1nn7a_ | 105 | Potassium channel kv4.2 {Rat (Rattus norvegicus) [ | 96.96 | |
| d3kvta_ | 103 | akv3.1 voltage-gated potassium channel {California | 96.9 | |
| d1t1da_ | 100 | Shaker potassium channel {California sea hare (Apl | 96.27 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.88 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.28 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 88.61 | |
| d1fs1b2 | 61 | Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa | 88.33 | |
| d1fs1b1 | 55 | Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa | 87.76 | |
| d1nexa2 | 72 | Centromere DNA-binding protein complex Cbf3 subuni | 86.74 | |
| d1nexa1 | 70 | Centromere DNA-binding protein complex Cbf3 subuni | 85.49 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.1e-31 Score=273.48 Aligned_cols=295 Identities=14% Similarity=0.070 Sum_probs=251.0
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHH
Q 005106 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLN 439 (714)
Q Consensus 362 s~~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~ 439 (714)
.+.+...++.+++..|+ ...+++.+|.++...|++++|+..|++|++++| ..++..+|.++..+|++++|+..+.
T Consensus 15 ~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~ 91 (388)
T d1w3ba_ 15 FEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp HHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccc
Confidence 44556666665554443 256788999999999999999999999999854 5578889999999999999998887
Q ss_pred HHHhcCC--------------------------------------------------------------------CcHHH
Q 005106 440 SVISSVT--------------------------------------------------------------------PLGWM 451 (714)
Q Consensus 440 ~aI~~~p--------------------------------------------------------------------~~~~a 451 (714)
+++...| +.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (388)
T d1w3ba_ 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHH
Confidence 7666544 34445
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 005106 452 YQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (714)
Q Consensus 452 y~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (714)
+..+|. .+..++|+..++++++++|+++.+|.++|.++...|++++|+..|++++.++|. +..+..+|.++...|
T Consensus 172 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (388)
T d1w3ba_ 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCC
Confidence 555543 245588999999999999999999999999999999999999999999999986 777888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 005106 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~ 606 (714)
++++|+..|+++++++|++.. +...++.+....+++++| +..+++++...|.++..
T Consensus 252 ~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~ 307 (388)
T d1w3ba_ 252 LIDLAIDTYRRAIELQPHFPD------AYCNLANALKEKGSVAEA------------------EDCYNTALRLCPTHADS 307 (388)
T ss_dssp CHHHHHHHHHHHHHTCSSCHH------HHHHHHHHHHHHSCHHHH------------------HHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHH------------------HHHHHhhhccCCccchh
Confidence 999999999999999999843 344444444555555555 78899999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhc
Q 005106 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALAD 683 (714)
Q Consensus 607 ~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~ 683 (714)
++.+|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|++|++++|++. +|++.|.+|.+
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988 99999998753
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.2e-28 Score=254.86 Aligned_cols=289 Identities=12% Similarity=0.055 Sum_probs=247.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CC
Q 005106 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CE 460 (714)
Q Consensus 387 ~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~ 460 (714)
..+|..+++.|+|++|+..|+++++.+| ..++..+|.++..+|++++|+..|+++++.+|+++.+|..+|.. ++
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 4678899999999999999999999854 56788999999999999999999999999999999988888753 56
Q ss_pred hhHHHHHHHHHHhcCC----------------------------------------------------------------
Q 005106 461 GDKRWEDLDKATALDP---------------------------------------------------------------- 476 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP---------------------------------------------------------------- 476 (714)
.++|+..|.++++.+|
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 6888877766666554
Q ss_pred ----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 005106 477 ----TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (714)
Q Consensus 477 ----~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~ 551 (714)
+++.++.++|..+...|++++|+..++++++++|+ +..+..+|.++...|++++|+..|++++.++|....
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---- 238 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV---- 238 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH----
T ss_pred ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHH----
Confidence 56778888899999999999999999999999996 788888899999999999999999999999988743
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
....++.+....+++++| +..++++++++|.++.+++++|.++..+|++++|+..+++++
T Consensus 239 --~~~~l~~~~~~~~~~~~A------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 239 --VHGNLACVYYEQGLIDLA------------------IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp --HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 333334444445555555 889999999999999999999999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCCCCCchhhHHHHHHHhhc
Q 005106 632 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (714)
Q Consensus 632 ~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
...|+++..+..+|+++..+|++++|+..|++|++++|++. ++++.|.++....-- ..-+..+++|++
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~ 367 (388)
T d1w3ba_ 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL----QEALMHYKEAIR 367 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC----HHHHHHHHHHHT
T ss_pred ccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 999999999876522 233556667765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.4e-26 Score=238.65 Aligned_cols=237 Identities=12% Similarity=-0.028 Sum_probs=190.9
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 005106 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (714)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r 494 (714)
+..|..++..|++++|+..|+++|+.+|+++.+|..+|. .++.++|+..|++|++++|++..+|.++|.++..+|+
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 456667777777777777777777777777777766654 2455788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHH---------H------HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 005106 495 VEAALAEINRILGFKLAL-ECLE---------L------RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (714)
Q Consensus 495 ~~eAl~~~~kAL~l~P~~-~~~~---------~------R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~ 558 (714)
+++|+..+++++.++|+. .... . ....+...+.+.+|+..|+++++++|++.. ..+....
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~----~~~~~~l 178 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID----PDVQCGL 178 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC----HHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc----cccchhh
Confidence 999999999999998862 2110 0 012355668899999999999999998743 2234444
Q ss_pred HHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 005106 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (714)
Q Consensus 559 ~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ 638 (714)
+.+....+++++| +..+++++..+|.++.+|+++|.++..+|++++|+..|++|++++|+++
T Consensus 179 ~~~~~~~~~~~~A------------------~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 179 GVLFNLSGEYDKA------------------VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhhh------------------hcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 5555555566666 7889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHH
Q 005106 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLK 677 (714)
Q Consensus 639 ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~ 677 (714)
++++++|++++.+|++++|+..|++||+++|+.. +++..
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 280 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhh
Confidence 9999999999999999999999999999999877 44443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.6e-25 Score=228.89 Aligned_cols=254 Identities=13% Similarity=-0.015 Sum_probs=212.3
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cC
Q 005106 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YC 459 (714)
Q Consensus 386 ~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~ 459 (714)
.+++|..++..|++++|+..|++||+.+| ..++.++|.++..+|++++|+..|.++++++|++..+|.++|. .+
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 35789999999999999999999999965 5679999999999999999999999999999999999988874 36
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHH---------------HHHHHHHhcCCHHHHHHHHHHHHhcCCC---HHHHHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYM---------------YRASSLMTKQNVEAALAEINRILGFKLA---LECLELRFCF 521 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~---------------~rg~~l~~l~r~~eAl~~~~kAL~l~P~---~~~~~~R~~~ 521 (714)
+.++|+..|++++.++|+....+. .....+...+.+.+|+..|.++++++|+ +..+..+|.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 779999999999999999765432 2223445567899999999999999995 5667789999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCC
Q 005106 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 601 (714)
Q Consensus 522 ~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P 601 (714)
+..+|++++|+..|++++.++|++. .+...++.+....+++++| +..++++++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~p 237 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPNDY------LLWNKLGATLANGNQSEEA------------------VAAYRRALELQP 237 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCT
T ss_pred HHHHHHHhhhhcccccccccccccc------cchhhhhhcccccccchhH------------------HHHHHHHHHHhh
Confidence 9999999999999999999999984 3445555555666666666 889999999999
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH-----------HHHHHHHHhcCCHHHHHHHHHH
Q 005106 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL-----------VYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 602 ~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~-----------~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
+++.+|+++|.++.++|++++|+..|++|++++|++..+. .++|.++..+|+.|.+...-.+
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~ 310 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 310 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999988754 4466677777777665544433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7.8e-25 Score=230.90 Aligned_cols=185 Identities=15% Similarity=0.130 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN-VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r-~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al 539 (714)
++|+..|++||+++|+++.+|++||.++..+|+ +++|+..++++|+++|+ +.+|++||+++..+|++++|+.+|++++
T Consensus 60 ~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal 139 (315)
T d2h6fa1 60 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL 139 (315)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhh
Confidence 455555555555555555555555555555543 55555555555555553 5555555555555555555555555555
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005106 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (714)
Q Consensus 540 ~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~ 619 (714)
+++|++.. +...++.+....+++++| +.+++++|+++|.+..+|+++|.++.++|+
T Consensus 140 ~~dp~n~~------a~~~~~~~~~~~~~~~~A------------------l~~~~~al~~~p~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 140 NQDAKNYH------AWQHRQWVIQEFKLWDNE------------------LQYVDQLLKEDVRNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHCTTCHH------HHHHHHHHHHHHTCCTTH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hhhhcchH------HHHHHHHHHHHHHhhHHH------------------HHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence 55555521 222222222223333333 555555555555556666666666666555
Q ss_pred ------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH
Q 005106 620 ------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (714)
Q Consensus 620 ------~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~ 671 (714)
+++|+..+.+|++++|++..+++++|+++...| .+++...++++++++|+.
T Consensus 196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTC
T ss_pred cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCc
Confidence 355666666666666666666666666544333 456666666666666553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.3e-24 Score=223.87 Aligned_cols=192 Identities=14% Similarity=0.149 Sum_probs=174.6
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCchhh
Q 005106 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSPDYRMF 548 (714)
Q Consensus 471 Ai~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg-d~e~Al~d~~~al~L~P~~~~~ 548 (714)
+|.++|++..+|.++|.++.+.+++++|+..+++||+++|+ +.+|++||.++..+| ++++|+..|+++++++|++..
T Consensus 35 ~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~- 113 (315)
T d2h6fa1 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ- 113 (315)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH-
T ss_pred ccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh-
Confidence 68889999999999999999999999999999999999996 899999999999987 599999999999999999943
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 005106 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (714)
Q Consensus 549 ~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~ 628 (714)
+...++.+....+++++| +..++++|+++|.+..+|+++|.++..+|++++|+..++
T Consensus 114 -----a~~~~~~~~~~l~~~~eA------------------l~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~ 170 (315)
T d2h6fa1 114 -----VWHHRRVLVEWLRDPSQE------------------LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD 170 (315)
T ss_dssp -----HHHHHHHHHHHHTCCTTH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred -----HHHHHhHHHHhhccHHHH------------------HHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444555455555555555 899999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCHH-HHHHHHHHhhccCC
Q 005106 629 LARQHAASDHERLVYEGWILYDTSH------CEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQ 686 (714)
Q Consensus 629 ~Al~l~P~~~ea~~~~G~~ly~~G~------~eeAl~~ye~Ai~i~~~~~-a~~~~~~~~~~~~~ 686 (714)
+|++++|++..+++++|.++..+|+ +++|+..+++||.++|+++ +|+..|.++.+..+
T Consensus 171 ~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~ 235 (315)
T d2h6fa1 171 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL 235 (315)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG
T ss_pred HHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcCh
Confidence 9999999999999999999998887 6899999999999999998 99999999987654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=1.5e-23 Score=220.49 Aligned_cols=252 Identities=10% Similarity=-0.113 Sum_probs=214.7
Q ss_pred hccchHHHHHHHHHHHhccchh--hHhhHHHHHH----------HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----
Q 005106 395 LRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGY----------IKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---- 458 (714)
Q Consensus 395 ~~g~y~eA~~~f~~AL~~~~~~--a~~~lg~~~~----------~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~---- 458 (714)
..+..++|+..|+++|+++|.+ +|..++.+.. ..|++.+|+..++++++.+|++..+|..+|..
T Consensus 41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence 3445589999999999997655 4555555444 44558899999999999999999999998742
Q ss_pred C--ChhHHHHHHHHHHhcCCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005106 459 C--EGDKRWEDLDKATALDPTLSYPYM-YRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (714)
Q Consensus 459 ~--~~~eAl~d~~kAi~LdP~~~~ay~-~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d 534 (714)
+ ..++|+..+++|++++|.+..++. .+|.++...+++++|+..++++|+++|+ +.+|+++|.++..+|++++|+..
T Consensus 121 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 2 358999999999999999999874 6789999999999999999999999996 89999999999999999999999
Q ss_pred HHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHH
Q 005106 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 614 (714)
Q Consensus 535 ~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L 614 (714)
+++++.+.|++.... .. +..+. ....+...+.+++..+|.+..++.++|.++
T Consensus 201 ~~~~~~~~~~~~~~~------~~----------------~~~l~------~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~ 252 (334)
T d1dcea1 201 GRLPENVLLKELELV------QN----------------AFFTD------PNDQSAWFYHRWLLGRAEPLFRCELSVEKS 252 (334)
T ss_dssp CSSCHHHHHHHHHHH------HH----------------HHHHC------SSCSHHHHHHHHHHSCCCCSSSCCCCHHHH
T ss_pred HHHhHHhHHHHHHHH------HH----------------HHHhc------chhHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 999999988763211 00 00111 112257889999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHH
Q 005106 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (714)
Q Consensus 615 ~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~ 674 (714)
..+|++++|+..+.+++..+|++.+++.++|+++..+|++++|+..|++|++++|+...|
T Consensus 253 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y 312 (334)
T d1dcea1 253 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 312 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHH
Confidence 999999999999999999999999999999999999999999999999999999987743
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=7.3e-21 Score=190.50 Aligned_cols=189 Identities=13% Similarity=0.020 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005106 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (714)
Q Consensus 462 ~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~ 540 (714)
++|+..|++|++++|+++.+|+++|.++..+|++++|+..|+++++++|+ +.++.++|.++..+|++++|+..|+++++
T Consensus 54 ~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 54 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666778888888888888888888888888888888888888888886 77788888888888888888888888888
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHH---HHHc
Q 005106 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL---LLRL 617 (714)
Q Consensus 541 L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~---L~~l 617 (714)
++|++.... .............+.+ ..........++.... +...... ....
T Consensus 134 ~~p~~~~~~------~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 188 (259)
T d1xnfa_ 134 DDPNDPFRS------LWLYLAEQKLDEKQAK------------------EVLKQHFEKSDKEQWG-WNIVEFYLGNISEQ 188 (259)
T ss_dssp HCTTCHHHH------HHHHHHHHHHCHHHHH------------------HHHHHHHHHSCCCSTH-HHHHHHHTTSSCHH
T ss_pred hccccHHHH------HHHHHHHHHhhhHHHH------------------HHHHHHhhccchhhhh-hhHHHHHHHHHHHH
Confidence 888874321 1111111122222222 1122223333333221 1111111 1123
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCH-HHHH
Q 005106 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 675 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~-~a~~ 675 (714)
+..+.+...+..++.+.|+.+++++++|.++..+|++++|+..|++|++++|+. ..|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 346677778888888899999999999999999999999999999999999864 3443
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.9e-22 Score=183.97 Aligned_cols=103 Identities=20% Similarity=0.353 Sum_probs=96.6
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|.|+|++|+|||.||+++|+||++||.+++.|+.+..+.++ ++++++|+.+++|+|||++. ++.++
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~--~v~~~~f~~ll~~~Ytg~~~-i~~~~ 95 (122)
T d1r29a_ 19 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDP--EINPEGFNILLDFMYTSRLN-LREGN 95 (122)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCT--TSCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeec--ccCHHHHHHHHhhhcCCeec-Cchhh
Confidence 4467889999999999999999999999999999999999999887777666 59999999999999999998 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHh
Q 005106 255 LLEILIFANKFCCERLKDACDRKLAS 280 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~ 280 (714)
+.+++.+|++|+++.|++.|.+||.+
T Consensus 96 v~~ll~~A~~l~i~~L~~~C~~~L~~ 121 (122)
T d1r29a_ 96 IMAVMATAMYLQMEHVVDTCRKFIKA 121 (122)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence 99999999999999999999999975
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=6.8e-22 Score=180.21 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=91.7
Q ss_pred ccCCCCCccEEEEEcCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 005106 175 MSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (714)
Q Consensus 175 ~~~~~~~~DV~l~v~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~~ 254 (714)
+..++.+|||+|.|+|++|+|||.|||++|+||++||.+++ .+|+++ ++++++|+.+++|+|||++. ++.++
T Consensus 22 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~-----~~i~~~--~v~~~~f~~ll~~~Ytg~i~-l~~~~ 93 (121)
T d1buoa_ 22 MRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS-----QHYTLD--FLSPKTFQQILEYAYTATLQ-AKAED 93 (121)
T ss_dssp HHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCC-----SEEEEC--SSCHHHHHHHHHHHHHSCCC-CCGGG
T ss_pred HHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCcc-----ceeecC--CCCHHHHHHHHHheEccccC-CcHHH
Confidence 45688899999999999999999999999999999998764 568998 49999999999999999998 99999
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHh
Q 005106 255 LLEILIFANKFCCERLKDACDRKLAS 280 (714)
Q Consensus 255 v~~lL~aAd~~~v~~L~~~C~~~L~~ 280 (714)
+.+++.+|++|+++.|++.|++||.+
T Consensus 94 v~~ll~~A~~l~~~~L~~~C~~~L~~ 119 (121)
T d1buoa_ 94 LDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999975
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.6e-20 Score=188.01 Aligned_cols=223 Identities=11% Similarity=-0.020 Sum_probs=166.0
Q ss_pred cchHHHHHHHHHHHhc------cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHh----cCChhHHHH
Q 005106 397 KEYDEAEHLFEAAVNA------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWE 466 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~------~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~----~~~~~eAl~ 466 (714)
.+++.|+..+++++.. ..+.+++.+|.+|..+|++++|+..|+++|+++|+++.+|+++|. .+++++|+.
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence 3455666666666643 133456677777777888888888888888888877777777764 356688899
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 005106 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 467 d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~ 545 (714)
.|++|++++|+++.+|.++|.++..+|++++|+..|+++++++|+ .......+..+...+..+.+..........++..
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence 999999999999999999999999999999999999999999996 6656667778888887777777777777777765
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHH
Q 005106 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 546 ~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (714)
... .......+.. ......+. +...+..++...|..+++|+++|.++..+|++++|+.
T Consensus 173 ~~~---~~~~~~~~~~-~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 230 (259)
T d1xnfa_ 173 WGW---NIVEFYLGNI-SEQTLMER------------------LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 230 (259)
T ss_dssp THH---HHHHHHTTSS-CHHHHHHH------------------HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhh---hHHHHHHHHH-HHHHHHHH------------------HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 311 0011100000 00011111 2445667778888999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHH
Q 005106 626 SLQLARQHAASDHERL 641 (714)
Q Consensus 626 ~~~~Al~l~P~~~ea~ 641 (714)
.|++|+..+|++-..|
T Consensus 231 ~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 231 LFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHTTCCTTCHHH
T ss_pred HHHHHHHcCCCCHHHH
Confidence 9999999999986444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=4.5e-21 Score=201.31 Aligned_cols=267 Identities=6% Similarity=-0.120 Sum_probs=212.5
Q ss_pred CchhHHHHHHHHHHhhhhHHH------H-HHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCC-
Q 005106 361 RSDKTVCFLERLLESAETDRQ------R-LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGH- 430 (714)
Q Consensus 361 rs~~~~~LLe~Lv~~a~~~lq------~-~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~- 430 (714)
.++....+.+.++..-|+... . ..++...|......|++++|+.+|+++|+.+| ..++..+|.++...|+
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~ 123 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence 455666777776654444321 1 13345566677778889999999999999965 5567788888777665
Q ss_pred -HHHHHHHHHHHHhcCCCcHHHHH-HHHh----cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 431 -KLWAYEKLNSVISSVTPLGWMYQ-ERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504 (714)
Q Consensus 431 -~~~A~~~~~~aI~~~p~~~~ay~-~rg~----~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~k 504 (714)
+++|+..++++++.+|+...++. ..|. .+..++|+..++++|+++|++..+|.+||.++..+|++++|+..+++
T Consensus 124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~ 203 (334)
T d1dcea1 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (334)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999999999999999877764 4553 25569999999999999999999999999999999999999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhcccc
Q 005106 505 ILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS 583 (714)
Q Consensus 505 AL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~ 583 (714)
++.+.|. ...+. .+..++..++|+..|.+++..+|++..+.... +.+....+++.+|
T Consensus 204 ~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l------~~~~~~~~~~~~a------------ 261 (334)
T d1dcea1 204 PENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELS------VEKSTVLQSELES------------ 261 (334)
T ss_dssp CHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCC------HHHHHHHHHHHHH------------
T ss_pred hHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHHhCcchhhHHHHH------HHHHHHHhhHHHH------------
Confidence 9999885 34332 34567888899999999999999985433221 1122233444445
Q ss_pred ccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHH
Q 005106 584 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 655 (714)
Q Consensus 584 ~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~e 655 (714)
+..+.+++..+|++..+|+.+|.++..+|++++|+..|++|++++|+++..+.++++.+.-..++.
T Consensus 262 ------~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~~ 327 (334)
T d1dcea1 262 ------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 327 (334)
T ss_dssp ------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHHH
Confidence 778999999999999999999999999999999999999999999999999999999988644433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.7e-18 Score=176.65 Aligned_cols=270 Identities=14% Similarity=0.079 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccch-------hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCC------cH
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTP------LG 449 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~-------~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~------~~ 449 (714)
......++.++...|++++|+..|++||+..|. .++..+|.++..+|++++|+..|.+++++.+. ..
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 455667899999999999999999999998443 36778999999999999999999999987442 23
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 005106 450 WMYQERSL----YCEGDKRWEDLDKATALDPTL--------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA------ 511 (714)
Q Consensus 450 ~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~--------~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~------ 511 (714)
.++.+++. .++..+|+..+.+++++.+.. ...+..+|.++..+|++++|+..+++++...+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 34444432 255699999999998865432 357888999999999999999999999998663
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh-hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF-EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~-~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al 590 (714)
...+...+..+...|++.+|...+.++..+.+..... .....+....+.+.....+++.| .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a------------------~ 233 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA------------------A 233 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH------------------H
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHH------------------H
Confidence 2344557788999999999999999999987664321 12233445555555555556655 5
Q ss_pred HHHHHHHHhCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHH------HhCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005106 591 SVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLAR------QHAASDHERLVYEGWILYDTSHCEEGLRK 660 (714)
Q Consensus 591 ~~~~qaL~l~P~~~----~~~~~~g~~L~~lg~~eeAl~~~~~Al------~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ 660 (714)
..+.+++...|.+. ..+.++|.++..+|++++|+..+++++ ...|+.+.++..+|++++.+|++++|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 313 (366)
T d1hz4a_ 234 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 313 (366)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56777887777664 446778999999999999999999998 45677889999999999999999999999
Q ss_pred HHHHHhcCCC
Q 005106 661 AEESIQMKRS 670 (714)
Q Consensus 661 ye~Ai~i~~~ 670 (714)
+++|+++.+.
T Consensus 314 l~~Al~l~~~ 323 (366)
T d1hz4a_ 314 LLDALKLANR 323 (366)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999998654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.7e-18 Score=187.80 Aligned_cols=221 Identities=7% Similarity=-0.167 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhc--cchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc--CChhHHHHHHHHHHhcC
Q 005106 400 DEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY--CEGDKRWEDLDKATALD 475 (714)
Q Consensus 400 ~eA~~~f~~AL~~--~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~--~~~~eAl~d~~kAi~Ld 475 (714)
-+|+++|++|+++ +.+.++.++|.++..+|++.+| |+++|..+|+.+.++...+.. ..+..+++.+.+.+...
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~ 79 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNR 79 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3788999999887 5567788888888888888876 667788887766654332211 01155666666666554
Q ss_pred CCC--hH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 005106 476 PTL--SY-PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (714)
Q Consensus 476 P~~--~~-ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~ 551 (714)
+.. .. ....++.+....+.|+.|+..+.+++.++|+ ...+.++|.++...|++++|+..+++++.++|..
T Consensus 80 ~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------ 153 (497)
T d1ya0a1 80 ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH------ 153 (497)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHHH------
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHH------
Confidence 322 21 1222455566667777777777777777775 5666667777777777777777777777665542
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al 631 (714)
+...+|.+....+++++| +..|.+|++++|+++.+|+++|.++...|+..+|+..|.+|+
T Consensus 154 --~~~~LG~l~~~~~~~~~A------------------~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 154 --CLVHLGDIARYRNQTSQA------------------ESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp --HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcccHHHH------------------HHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222233333334444444 445555555555555555555555555555555555555555
Q ss_pred HhCCCChhHHHHHHHHHH
Q 005106 632 QHAASDHERLVYEGWILY 649 (714)
Q Consensus 632 ~l~P~~~ea~~~~G~~ly 649 (714)
.++|..+.|+.|++.++-
T Consensus 214 ~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 214 AVKFPFPAASTNLQKALS 231 (497)
T ss_dssp SSSBCCHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHH
Confidence 555555555555555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.3e-17 Score=161.11 Aligned_cols=161 Identities=11% Similarity=0.091 Sum_probs=122.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd 527 (714)
|..+...|++ ++|+..|++ +.|.++.+|+|+|.++..+|++++|+..|++||+++|+ +.+|++||.++..+|+
T Consensus 12 g~~~~~~~d~---~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDW---KGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCH---HHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCH---HHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence 3344444333 666666664 35667889999999999999999999999999999997 8999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH
Q 005106 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~ 607 (714)
+++|+.+|++|++..|.+.... +.++. +...+...+.+
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~------------------------~~~~~------------------~~~~~~~~e~~ 123 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLID------------------------YKILG------------------LQFKLFACEVL 123 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE------------------------CGGGT------------------BCCEEEHHHHH
T ss_pred HHHHHHHHHHHHHhCccCchHH------------------------HHHhh------------------hhcccchHHHH
Confidence 9999999999999988773200 00000 01111234567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005106 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (714)
Q Consensus 608 ~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~ 669 (714)
+++|.++.++|++++|++.+++|+++.|+. ..+.++.|+..+.++..++|
T Consensus 124 ~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~------------~~~~~~~Al~~~~~~~~~~~ 173 (192)
T d1hh8a_ 124 YNIAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 173 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSG------------GGGHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------------chHHHHHHHHHHHhhhhCCc
Confidence 899999999999999999999999999975 34555677777777766665
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.4e-14 Score=147.05 Aligned_cols=294 Identities=13% Similarity=0.076 Sum_probs=222.7
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--------hh
Q 005106 347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAET--DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--------IY 416 (714)
Q Consensus 347 ~~~~l~~V~~d~~~rs~~~~~LLe~Lv~~a~~--~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--------~~ 416 (714)
+.++...+.+... +.+....++++++...+. ......++..+|.++..+|++++|+..|++|+++.+ ..
T Consensus 14 ~~~lrA~~~~~~g-~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 14 FNALRAQVAINDG-NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 3455566666654 567888888886654332 334467889999999999999999999999998721 23
Q ss_pred hHhhHHHHHHHhCCHHHHHHHHHHHHhcCC--------CcHHHHHHHHh----cCChhHHHHHHHHHHhcCCCC-----h
Q 005106 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVT--------PLGWMYQERSL----YCEGDKRWEDLDKATALDPTL-----S 479 (714)
Q Consensus 417 a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p--------~~~~ay~~rg~----~~~~~eAl~d~~kAi~LdP~~-----~ 479 (714)
++.++|.++...|++..|...+.+++.+.+ ..+..+..+|. .++.++|...|.+++...+.. .
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 466788999999999999999999987532 23344444443 255699999999999987765 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA--------LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~--------~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~ 551 (714)
.++...|.++...+.+.+|...+.+++.+.+. ...+..++.++...|++++|+..+++++++.|.+....
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 250 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL-- 250 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG--
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH--
Confidence 67888999999999999999999999987432 12345577899999999999999999999998764322
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHH------HhCCCChhHHHHHHHHHHHcCChHHHHH
Q 005106 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML------ESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (714)
Q Consensus 552 ~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL------~l~P~~~~~~~~~g~~L~~lg~~eeAl~ 625 (714)
......++.+....+++++| ...+++++ ...|..+.++..+|.++.++|++++|++
T Consensus 251 ~~~~~~la~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (366)
T d1hz4a_ 251 QGQWRNIARAQILLGEFEPA------------------EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 22334445555556666666 44555555 5567888999999999999999999999
Q ss_pred HHHHHHHhCCC---------ChhHHHHHHHHHHhcCCHHHHHHHH
Q 005106 626 SLQLARQHAAS---------DHERLVYEGWILYDTSHCEEGLRKA 661 (714)
Q Consensus 626 ~~~~Al~l~P~---------~~ea~~~~G~~ly~~G~~eeAl~~y 661 (714)
.+++|+++.+. .++.+..+...+...|+.+|+....
T Consensus 313 ~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~ 357 (366)
T d1hz4a_ 313 VLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR 357 (366)
T ss_dssp HHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 99999998764 3345555666677788888887653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=5.9e-16 Score=150.89 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=122.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l 561 (714)
+.++|..+.+.|++++|+..|+++. +|++..++++|.+|..+|++++|+.+|++|+++||++
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~i~--~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~---------------- 69 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------- 69 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh----------------
Confidence 4478999999999999999999864 5678899999999999999999999999988888887
Q ss_pred HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----
Q 005106 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---- 637 (714)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~---- 637 (714)
+.+|+++|.++.++|++++|+..|++|+...|.+
T Consensus 70 ------------------------------------------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~ 107 (192)
T d1hh8a_ 70 ------------------------------------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 107 (192)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE
T ss_pred ------------------------------------------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHH
Confidence 4578899999999999999999999999886654
Q ss_pred ------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 005106 638 ------------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYA 680 (714)
Q Consensus 638 ------------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~~~ 680 (714)
+++++++|+++..+|++++|++.+++|+.+.|... ....+|..
T Consensus 108 ~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~ 163 (192)
T d1hh8a_ 108 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 163 (192)
T ss_dssp CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHH
T ss_pred HHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 47899999999999999999999999999999865 45555543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.5e-16 Score=177.09 Aligned_cols=263 Identities=7% Similarity=-0.054 Sum_probs=160.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhc
Q 005106 365 TVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444 (714)
Q Consensus 365 ~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~ 444 (714)
+.+.++++..+-++. +.++.++|.++..+|++++| |+++|..+|.++.........-+..+..+++.+++.++.
T Consensus 5 A~q~~~qA~~l~p~~---a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 5 SAQYLRQAEVLKADM---TDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHGGG---TCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCC---HHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccc
Confidence 445666666655544 55778999999999999987 899999988766443222222233466778888887765
Q ss_pred CCC--c--------HHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHH
Q 005106 445 VTP--L--------GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALEC 514 (714)
Q Consensus 445 ~p~--~--------~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~ 514 (714)
..+ . +..+...+.| ++|+..|.+++.++|++..++.++|.++...|++++|+..+++++.++| ..+
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y---~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~ 154 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFY---TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHC 154 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHH---HHHHHHHTC-------------------------------CCHHHHHHH-HHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHH
Confidence 432 1 1122223444 8888899999999999999999999999999999999999999997765 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 005106 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~ 594 (714)
+.++|.++..+|++++|+..|++|++++|++ +.+++.+|.+.....++.+| +..|.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~------~~~~~~Lg~~~~~~~~~~~A------------------~~~y~ 210 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSN------GQPYNQLAILASSKGDHLTT------------------IFYYC 210 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB------SHHHHHHHHHHHHTTCHHHH------------------HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------hHHHHHHHHHHHHcCCHHHH------------------HHHHH
Confidence 7889999999999999999999999999999 44566666666666666666 78899
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
|||.++|..+.++.|++.++.+.....++... ....+.....+...--++|..+.+++.-...++.+
T Consensus 211 ral~~~~~~~~a~~nL~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~ 277 (497)
T d1ya0a1 211 RSIAVKFPFPAASTNLQKALSKALESRDEVKT----KWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277 (497)
T ss_dssp HHHSSSBCCHHHHHHHHHHHHHHTTSCCCCCS----SCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHhhhhhhhhcc----ccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence 99999999999999999998876544322110 00011122344555556666666666554444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.3e-15 Score=139.48 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHH
Q 005106 481 PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (714)
Q Consensus 481 ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~ 559 (714)
.+..+|+.+++.|+|++|+..|++||+++|+ +..|.++|.++..+|++++|+.+|+++++++|++
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-------------- 77 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-------------- 77 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc--------------
Confidence 4677899999999999999999999999996 8889999999999999999999888888888776
Q ss_pred HHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 005106 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (714)
Q Consensus 560 ~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~e 639 (714)
+.+|+++|.++..+|++++|+.++++|++++|++.+
T Consensus 78 --------------------------------------------~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~ 113 (159)
T d1a17a_ 78 --------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 113 (159)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred --------------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 356888999999999999999999999999999999
Q ss_pred HHHHHHHHHH--hcCCHHHHHHH
Q 005106 640 RLVYEGWILY--DTSHCEEGLRK 660 (714)
Q Consensus 640 a~~~~G~~ly--~~G~~eeAl~~ 660 (714)
++..++.+.. ..+.+++|+..
T Consensus 114 ~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 114 AKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 9988887753 33445555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=3.3e-15 Score=153.76 Aligned_cols=228 Identities=11% Similarity=0.031 Sum_probs=122.6
Q ss_pred ccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 005106 396 RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALD 475 (714)
Q Consensus 396 ~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~Ld 475 (714)
.++|++|.+.|.+| |.+|..+|++++|+..|.+|++++...+ -.
T Consensus 30 ~~~~~~Aa~~y~~a------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~------------------------~~ 73 (290)
T d1qqea_ 30 SYKFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAG------------------------NE 73 (290)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT------------------------CH
T ss_pred cccHHHHHHHHHHH------------HHHHHHCcCHHHHHHHHHHHHHHHHHcC------------------------CC
Confidence 44677777777765 5567777888888877777777632100 01
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFF-LALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 476 P~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-------~~~~~~R~~~~-~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
|+.+.+|.+.|.+|..+|++++|+..|++++++.++ ...+...|.++ ..+|++++|+..|++|+++.+....
T Consensus 74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~ 153 (290)
T d1qqea_ 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 112234455555555555555555555555554321 11122233333 2345555555555555554332210
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCCh-------hHHHHHHHHHHHcCCh
Q 005106 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG-------VLYFRQSLLLLRLNCP 620 (714)
Q Consensus 548 ~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~-------~~~~~~g~~L~~lg~~ 620 (714)
-.....+....+.+....+++++| +..|++++...|.++ ..+++.|.++...|++
T Consensus 154 ~~~~~~~~~~la~~~~~~g~y~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 215 (290)
T d1qqea_ 154 VALSNKCFIKCADLKALDGQYIEA------------------SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred hhhhhhHHHHHHHHHHHcChHHHH------------------HHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccH
Confidence 000011222222233333333333 445555555555444 3467889999999999
Q ss_pred HHHHHHHHHHHHhCCCChhH-----HHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 005106 621 EAAMRSLQLARQHAASDHER-----LVYEGWILYD--TSHCEEGLRKAEESIQMKRSFEAFFLK 677 (714)
Q Consensus 621 eeAl~~~~~Al~l~P~~~ea-----~~~~G~~ly~--~G~~eeAl~~ye~Ai~i~~~~~a~~~~ 677 (714)
+.|...++++++++|...+. +..++.++.. .+.+++|+..|+++..++|-..-+++|
T Consensus 216 ~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L~~ 279 (290)
T d1qqea_ 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNK 279 (290)
T ss_dssp HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 99999999999999976654 3334444332 456999999999999888754444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=6.3e-15 Score=131.80 Aligned_cols=107 Identities=21% Similarity=0.182 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH
Q 005106 483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (714)
Q Consensus 483 ~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l 561 (714)
..+|..++..|++++|+..|+++|+++|+ +..|.++|.+|..+|++++|+.+|+++++++|++
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------- 70 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---------------- 70 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch----------------
Confidence 44566666666666666666666666663 5555566666666666666655555555555544
Q ss_pred HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 005106 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (714)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~ 641 (714)
+.+|+++|.++..+|++++|+..|++|++++|++.+++
T Consensus 71 ------------------------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 108 (117)
T d1elwa_ 71 ------------------------------------------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK 108 (117)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ------------------------------------------hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 23455666666666666666666666666666666666
Q ss_pred HHHHHH
Q 005106 642 VYEGWI 647 (714)
Q Consensus 642 ~~~G~~ 647 (714)
.+++.+
T Consensus 109 ~~l~~l 114 (117)
T d1elwa_ 109 EGLQNM 114 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=2.2e-15 Score=144.59 Aligned_cols=122 Identities=15% Similarity=0.035 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
+..+...|+.++..|+|++|+..|++||+++|+ +.+|.++|.+|..+|++++|+.+|++|++++|++
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~------------ 71 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------------ 71 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc------------
Confidence 344556666666666666666666666666664 5556666666666666666666666666555554
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
+.+|+++|.++.++|++++|+..|++|++++|++
T Consensus 72 ----------------------------------------------~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 72 ----------------------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 2335556666666666666666666666666655
Q ss_pred hhHHHHHHHHHHhcCCHHHHH
Q 005106 638 HERLVYEGWILYDTSHCEEGL 658 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl 658 (714)
...+...++..+..+....+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~~~ 126 (201)
T d2c2la1 106 RLNFGDDIPSALRIAKKKRWN 126 (201)
T ss_dssp TCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 555555555554444444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=8.6e-15 Score=130.91 Aligned_cols=97 Identities=14% Similarity=0.083 Sum_probs=88.7
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (714)
.|..+.+.|++ ++|+..|++||+++|+++.+|.++|.++..+|++++|+..|+++|+++|+ +.+|+++|.++..+|
T Consensus 9 ~g~~~~~~g~~---~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNI---DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCH---HHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 46666666555 88899999999999999999999999999999999999999999999996 889999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchh
Q 005106 527 DYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~ 547 (714)
++++|+.+|+++++++|++..
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~ 106 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQ 106 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999854
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.9e-14 Score=132.75 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=84.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd 527 (714)
|..|++.|+| ++|+..|++|++++|+++.+|.++|.+++.+|++++|+..|++||+++|+ +.++..+|.++..+|+
T Consensus 17 gn~~~~~~~y---~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDY---ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCH---HHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 5566666555 77888888999999999999999999999999999999999999999996 7888999999999999
Q ss_pred HHHHHHHHHHHHhhCCCchh
Q 005106 528 YQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~~~ 547 (714)
+++|+.+|+++++++|++..
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~ 113 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKD 113 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999999854
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=1.7e-13 Score=140.83 Aligned_cols=173 Identities=8% Similarity=-0.002 Sum_probs=132.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-----C-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 005106 482 YMYRASSLMTKQNVEAALAEINRILGFK-----L-A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (714)
Q Consensus 482 y~~rg~~l~~l~r~~eAl~~~~kAL~l~-----P-~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a 554 (714)
|...|++|..+|++++|+..|.+|+++. + + ...+.+.|.+|..+|++++|+..|++++++.++......-..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 3444889999999999999999999973 2 2 3567788999999999999999999999998775322222222
Q ss_pred HHHHHHH-HHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCC------ChhHHHHHHHHHHHcCChHHHHHHH
Q 005106 555 SQLHMLV-REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP------KGVLYFRQSLLLLRLNCPEAAMRSL 627 (714)
Q Consensus 555 ~~~~~~l-~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~------~~~~~~~~g~~L~~lg~~eeAl~~~ 627 (714)
....+.+ .....++++| +..+.+|+++.+. ...++.++|.++..+|++++|+..|
T Consensus 120 ~~~l~~~~~~~~~~~~~A------------------~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~ 181 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKA------------------IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181 (290)
T ss_dssp HHHHHHHHHHTTCCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhHhhHHHHHHHH------------------HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHH
Confidence 2222222 2233444554 7788888887543 3556899999999999999999999
Q ss_pred HHHHHhCCCChh-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH
Q 005106 628 QLARQHAASDHE-------RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (714)
Q Consensus 628 ~~Al~l~P~~~e-------a~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~ 672 (714)
++++++.|.+.. .+.+.|.+++..|++++|...+++++.++|+|.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~ 233 (290)
T d1qqea_ 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (290)
T ss_dssp HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc
Confidence 999999998763 467889999999999999999999999999876
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=2.3e-14 Score=137.27 Aligned_cols=97 Identities=22% Similarity=0.234 Sum_probs=86.9
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Q 005106 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (714)
Q Consensus 448 ~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lg 526 (714)
.|..|+..|.+ ++|+..|++||+++|+++.+|.++|.+|..+|++++|+..|++||+++|+ +.+|+++|.+|..+|
T Consensus 10 ~Gn~~~~~g~~---~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~ 86 (201)
T d2c2la1 10 QGNRLFVGRKY---PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 86 (201)
T ss_dssp HHHHHHHTTCH---HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 35555555555 88888899999999999999999999999999999999999999999996 889999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchh
Q 005106 527 DYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~ 547 (714)
++++|+.+|++|++++|++..
T Consensus 87 ~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 87 SYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCcccHH
Confidence 999999999999999997643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.48 E-value=2.4e-13 Score=128.72 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=74.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 005106 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (714)
Q Consensus 468 ~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~ 546 (714)
..+.+.++|..+..|.|||.++..+|++++|+..|++||+++|+ +.+|+.+|.+|..+|++++|+.+|+++++++|++.
T Consensus 66 ~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~ 145 (169)
T d1ihga1 66 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 145 (169)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 35567788999999999999999999999999999999999996 89999999999999999999999999999999984
Q ss_pred h
Q 005106 547 M 547 (714)
Q Consensus 547 ~ 547 (714)
.
T Consensus 146 ~ 146 (169)
T d1ihga1 146 A 146 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=4.6e-13 Score=127.38 Aligned_cols=68 Identities=25% Similarity=0.261 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 480 ~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
.+|.|+|.+|+.+|++++|+..+++||.++|+ +.+++.+|.+|..+|++++|+.+|+++++++|++..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~ 131 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 131 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 46889999999999999999999999999995 889999999999999999999999999999999854
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.42 E-value=1.9e-13 Score=129.38 Aligned_cols=121 Identities=9% Similarity=-0.045 Sum_probs=94.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHH
Q 005106 516 ELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 595 (714)
Q Consensus 516 ~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~q 595 (714)
..+|..+...|+|++|+..|++++++.|.... .....+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~------------------------------------------~~~~~~ 68 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA------------------------------------------AAEDAD 68 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH------------------------------------------HSCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh------------------------------------------hhhhHH
Confidence 44566677777777777777777765443210 001233
Q ss_pred HHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HH
Q 005106 596 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AF 674 (714)
Q Consensus 596 aL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~ 674 (714)
...++|..+.++.++|.++.++|++++|+..+++|++++|+++.+++++|.+++.+|++++|+..|++|++++|++. +.
T Consensus 69 ~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~ 148 (169)
T d1ihga1 69 GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ 148 (169)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34556777888999999999999999999999999999999999999999999999999999999999999999887 54
Q ss_pred HHHH
Q 005106 675 FLKA 678 (714)
Q Consensus 675 ~~~~ 678 (714)
...+
T Consensus 149 ~~l~ 152 (169)
T d1ihga1 149 AELL 152 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.2e-12 Score=124.31 Aligned_cols=121 Identities=15% Similarity=0.021 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L---------------ECLELRFCFFLALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~---------------~~~~~R~~~~~~lgd~e~Al~d~~~al~L~ 542 (714)
+..+..+|+.++..|+|++|+..|++||.+.|. . ..+.++|.+|..+|++++|+.++++|++++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 345667777777777777777777777776552 1 123345555555555555555554444444
Q ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHH
Q 005106 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA 622 (714)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~ee 622 (714)
|+ ++.+|+++|.++..+|++++
T Consensus 93 p~----------------------------------------------------------~~~a~~~~g~~~~~~g~~~~ 114 (170)
T d1p5qa1 93 SN----------------------------------------------------------NEKGLSRRGEAHLAVNDFEL 114 (170)
T ss_dssp TT----------------------------------------------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred cc----------------------------------------------------------chhhhHHHHHHHHHhhhHHH
Confidence 44 34567777888888888888
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHH
Q 005106 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 657 (714)
Q Consensus 623 Al~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeA 657 (714)
|+.+|++|++++|+|..+...++.+....+...+.
T Consensus 115 A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 115 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877777777666655544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.39 E-value=1.3e-12 Score=121.93 Aligned_cols=72 Identities=7% Similarity=-0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHH
Q 005106 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLK 677 (714)
Q Consensus 606 ~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~ 677 (714)
++.|+|.++.++|++++|+..+++|++++|++..+++++|.+++.+|++++|+..|++|+.++|+.. +..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l 141 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4556777777777777777777777777777777777777777777777777777777777777665 44433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=3e-11 Score=124.56 Aligned_cols=207 Identities=11% Similarity=0.025 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 462 DKRWEDLDKATA-LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L-ECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 462 ~eAl~d~~kAi~-LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~-~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
++|...|++|++ ..|.....|...+..+..+|++++|...|+++|+..|. . ..|...+.+....|++++|...|.++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 788899999997 58999999999999999999999999999999999995 3 45667788889999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005106 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (714)
Q Consensus 539 l~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~l 617 (714)
++..|.....+ ...+.+.. ...++.. |..++++++...|.++.+|...+..+...
T Consensus 161 l~~~~~~~~~~------~~~a~~e~------------------~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~ 216 (308)
T d2onda1 161 REDARTRHHVY------VTAALMEY------------------YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 216 (308)
T ss_dssp HTSTTCCTHHH------HHHHHHHH------------------HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhCCCcHHHH------HHHHHHHH------------------HhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc
Confidence 99999874321 11111111 1112222 47799999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChh--HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCHH-----HHHHHHHHhhccCCCC
Q 005106 618 NCPEAAMRSLQLARQHAASDHE--RLVYEGWILY--DTSHCEEGLRKAEESIQMKRSFE-----AFFLKAYALADSSQDS 688 (714)
Q Consensus 618 g~~eeAl~~~~~Al~l~P~~~e--a~~~~G~~ly--~~G~~eeAl~~ye~Ai~i~~~~~-----a~~~~~~~~~~~~~~~ 688 (714)
|+.+.|...|++|++..|.+++ ......|+.+ ..|+.+.+...++|+.++-|+.. +=++-=|... .++|
T Consensus 217 g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ry~~~--d~~~ 294 (308)
T d2onda1 217 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFM--DLYP 294 (308)
T ss_dssp CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHHTTTCBT--TBCS
T ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccchHHHHHHHHHhc--ccCc
Confidence 9999999999999998887654 2334455544 45999999999999999887662 1122222222 3778
Q ss_pred CchhhH
Q 005106 689 SCSSTV 694 (714)
Q Consensus 689 ~~~~~~ 694 (714)
.++..+
T Consensus 295 ~~~~~l 300 (308)
T d2onda1 295 CSASEL 300 (308)
T ss_dssp SCHHHH
T ss_pred CCHHHH
Confidence 666544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.39 E-value=1.5e-12 Score=123.39 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
...|.|+|.+|..+|++++|+.+++++|.++|+ ..+++.+|.++..+|++++|+.+|+++++++|++.. +...
T Consensus 64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~------~~~~ 137 (168)
T d1kt1a1 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA------ARLQ 137 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH------HHHH
T ss_pred HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHH
Confidence 457889999999999999999999999999996 888999999999999999999999999999999843 4444
Q ss_pred HHHHHHhhhhhhHH
Q 005106 558 HMLVREHIDNWTIA 571 (714)
Q Consensus 558 ~~~l~~~~~~~~~A 571 (714)
++.+...++...+.
T Consensus 138 l~~~~~~~~~~~e~ 151 (168)
T d1kt1a1 138 IFMCQKKAKEHNER 151 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH
Confidence 44554444444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.38 E-value=6.1e-11 Score=118.66 Aligned_cols=232 Identities=13% Similarity=0.034 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHh-
Q 005106 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLGWMYQERSL- 457 (714)
Q Consensus 383 ~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~----~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~- 457 (714)
..+++++|..+...|++++|+++|++|.+.++..+.+++|.+|.. ..++..|..++.++.......+ ....|.
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a--~~~l~~~ 79 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNG--CHLLGNL 79 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccch--hhccccc
Confidence 357889999999999999999999999999999999999999887 5577777777766665543222 122111
Q ss_pred -------cCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 005106 458 -------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLALE 526 (714)
Q Consensus 458 -------~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~lg 526 (714)
....+.|+..|++|++..+. .+...+|..+.. ......|+..+.+.... .++..+.++|.++....
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~--~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~L~~~~~~~~ 156 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKYA--EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-NDGDGCTILGSLYDAGR 156 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTS
T ss_pred cccccccchhhHHHHHHHhhhhhhhhh--hHHHhhcccccCCCcccchhHHHHHHhhhhhcc-cccchhhhhhhhhccCC
Confidence 11224555555555544332 333333333332 23344444444444421 12333333333322100
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhH
Q 005106 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (714)
Q Consensus 527 d~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~ 606 (714)
. ...+...+...+..+. +++++.+
T Consensus 157 ~------------------------------------------------------~~~~~~~~~~~~~~a~--~~g~~~A 180 (265)
T d1ouva_ 157 G------------------------------------------------------TPKDLKKALASYDKAC--DLKDSPG 180 (265)
T ss_dssp S------------------------------------------------------SCCCHHHHHHHHHHHH--HTTCHHH
T ss_pred C------------------------------------------------------cccccccchhhhhccc--ccccccc
Confidence 0 0001111233445544 4678999
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 005106 607 YFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLK 677 (714)
Q Consensus 607 ~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~a~~~~ 677 (714)
.+++|.++.. ..++++|+..|++|.+.. ++.+.+++|.+++. ..++++|+..|++|+......+...|+
T Consensus 181 ~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~l~ 257 (265)
T d1ouva_ 181 CFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 257 (265)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999887 678999999999999884 78999999999986 448999999999999998777655543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.38 E-value=5.9e-13 Score=123.59 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=78.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 005106 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK----------QNVEAALAEINRILGFKLA-LECLELRF 519 (714)
Q Consensus 451 ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l----------~r~~eAl~~~~kAL~l~P~-~~~~~~R~ 519 (714)
.|...+.+ ++|+..|++|++++|+++.+|+++|.++..+ +++++|+..|++||+++|+ +.+++++|
T Consensus 6 ~~~r~~~f---e~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG 82 (145)
T d1zu2a1 6 EFDRILLF---EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 82 (145)
T ss_dssp SHHHHHHH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHccH---HHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHH
Confidence 34445555 8999999999999999999999999998854 4557899999999999996 88888899
Q ss_pred HHHHhcCC-----------HHHHHHHHHHHHhhCCCchh
Q 005106 520 CFFLALED-----------YQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 520 ~~~~~lgd-----------~e~Al~d~~~al~L~P~~~~ 547 (714)
.+|..+|+ +++|+..|++|++++|++..
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~ 121 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHH
Confidence 88877764 79999999999999999854
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.37 E-value=6.3e-12 Score=117.24 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcC
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G 652 (714)
|+.+++++|+++|.++.+|+++|.++..+|++++|+.+|++|++++|+|.++...++++...+.
T Consensus 86 Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 86 AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999876553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.2e-12 Score=115.37 Aligned_cols=106 Identities=14% Similarity=0.072 Sum_probs=88.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCH---HHHHHHHHHHH
Q 005106 450 WMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN---VEAALAEINRILGFKLAL---ECLELRFCFFL 523 (714)
Q Consensus 450 ~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r---~~eAl~~~~kAL~l~P~~---~~~~~R~~~~~ 523 (714)
..+...+.+ ++|.+.|++|+.++|+++.+++|+|.+|+..++ +++|+..|+++|+.+|++ ++++++|.+|.
T Consensus 7 n~~~~~~~l---~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 7 NELVSVEDL---LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHH---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 445555555 999999999999999999999999999987555 457999999999999853 57899999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHh
Q 005106 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH 564 (714)
Q Consensus 524 ~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~ 564 (714)
.+|++++|+..|+++++++|++. .+..+++.+...
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~------~A~~l~~~I~~~ 118 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNN------QAKELERLIDKA 118 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHH
Confidence 99999999999999999999994 455555544443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.35 E-value=6.6e-12 Score=118.76 Aligned_cols=137 Identities=16% Similarity=0.110 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
..+..+...|..++..|+|.+|+..|++||..-+......- ........+ .+.++.|.|.+|..+|.+
T Consensus 13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~--------~~~~~~~~~--~~~~~~Nla~~~~~l~~~-- 80 (168)
T d1kt1a1 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE--------KESKASESF--LLAAFLNLAMCYLKLREY-- 80 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH--------HHHHHHHHH--HHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch--------hhhhhcchh--HHHHHHhHHHHHHHhhhc--
Confidence 34566788999999999999999999999986221110000 000111111 122233466667776555
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQA 530 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~ 530 (714)
++|+.++++|++++|++..+|+++|.++..+|++++|+.+|+++++++|+ ..+...++.+...++.+.+
T Consensus 81 -~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 81 -TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150 (168)
T ss_dssp -HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999996 7777777777666665544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=4.2e-12 Score=114.88 Aligned_cols=114 Identities=9% Similarity=0.052 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 005106 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (714)
Q Consensus 479 ~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~ 557 (714)
+..+.++|+.++..|+|++|+..|+++|+++|+ +.++.++|.+|..+|+|++|+.+|+++++++|++...+ .
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~------~- 76 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY------R- 76 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH------H-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHH------H-
Confidence 346789999999999999999999999999996 88999999999999999999999999999999984311 0
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 558 ~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
.-+.+|+++|.++..+|.+++|+..|++++..+|+
T Consensus 77 --------------------------------------------~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~- 111 (128)
T d1elra_ 77 --------------------------------------------QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT- 111 (128)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-
Confidence 01245778999999999999999999999998875
Q ss_pred hhHHHHH
Q 005106 638 HERLVYE 644 (714)
Q Consensus 638 ~ea~~~~ 644 (714)
++.+..+
T Consensus 112 ~~~~~~l 118 (128)
T d1elra_ 112 PDVLKKC 118 (128)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.33 E-value=9.3e-13 Score=122.25 Aligned_cols=122 Identities=11% Similarity=-0.039 Sum_probs=90.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhh
Q 005106 488 SLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (714)
Q Consensus 488 ~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~ 566 (714)
.+.+++++++|+..|++||+++|+ +++++++|.++..++++..+... .+
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~------------------------------~~ 55 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA------------------------------KQ 55 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH------------------------------HH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH------------------------------HH
Confidence 355667788888888888888885 77777778777666655444331 11
Q ss_pred hhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCC
Q 005106 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC-----------PEAAMRSLQLARQHAA 635 (714)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~-----------~eeAl~~~~~Al~l~P 635 (714)
.+++| +..|++||+++|+++.+|+++|.++..+|+ +++|...|++|++++|
T Consensus 56 ~~~~A------------------i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 56 MIQEA------------------ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp HHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHH------------------HHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 22233 677888888888888889999998887764 6899999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHH
Q 005106 636 SDHERLVYEGWILYDTSHCEEG 657 (714)
Q Consensus 636 ~~~ea~~~~G~~ly~~G~~eeA 657 (714)
++..++.++|.+.-..+.++|+
T Consensus 118 ~~~~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 118 DNTHYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp TCHHHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998886555444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=4.3e-12 Score=114.77 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC
Q 005106 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (714)
Q Consensus 382 ~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~--~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~ 459 (714)
++.++.++|..++..|+|++|+.+|++||+++| ..++.++|.++..+|++++|+.+++++|+++|+.+.+|..++
T Consensus 3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a--- 79 (128)
T d1elra_ 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA--- 79 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH---
Confidence 567788999999999999999999999999964 446778899999999999998888888888877766666553
Q ss_pred ChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHH
Q 005106 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLEL 517 (714)
Q Consensus 460 ~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~~~~~~~ 517 (714)
.+|.++|.++..++++++|+..|++++..+|+++....
T Consensus 80 --------------------~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~ 117 (128)
T d1elra_ 80 --------------------KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117 (128)
T ss_dssp --------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred --------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence 35789999999999999999999999999998765543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.32 E-value=2.2e-12 Score=114.15 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCC
Q 005106 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (714)
Q Consensus 449 ~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd 527 (714)
|..+.+.|++ ++|+..|++|++++|+++.+|.++|.++..+|++++|+..|++||+++|+ ++++..+|.+|..+|+
T Consensus 23 g~~~~~~g~~---~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANL---AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh---HHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 3444444444 67777788888889999999999999999999999999999999999996 8888889999999999
Q ss_pred HHHHHHHHHHHH
Q 005106 528 YQAALCDVQAIL 539 (714)
Q Consensus 528 ~e~Al~d~~~al 539 (714)
+++|+..+++.|
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.4e-12 Score=117.69 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhCCCChhHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005106 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP---EAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEE 663 (714)
Q Consensus 589 al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~---eeAl~~~~~Al~l~P~~--~ea~~~~G~~ly~~G~~eeAl~~ye~ 663 (714)
|...|+++|.++|.++.++||+|.+|.+.++. ++|+..++++++.+|++ .++++++|++++.+|++++|+..|++
T Consensus 18 Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~ 97 (122)
T d1nzna_ 18 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 97 (122)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 36789999999999999999999999986655 46999999999999876 56999999999999999999999999
Q ss_pred HHhcCCCHH-HHHHHHHHh
Q 005106 664 SIQMKRSFE-AFFLKAYAL 681 (714)
Q Consensus 664 Ai~i~~~~~-a~~~~~~~~ 681 (714)
+++++|++. |..+++...
T Consensus 98 aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 98 LLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHCTTCHHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHH
Confidence 999999988 888887653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.31 E-value=5.4e-12 Score=111.51 Aligned_cols=93 Identities=13% Similarity=-0.001 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHH
Q 005106 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (714)
Q Consensus 515 ~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~ 594 (714)
++..|..+...|++++|+..|+++++++|++
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------------------- 49 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------------------------------------------------- 49 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------------------------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccccccc-------------------------------------------------
Confidence 4567777777888887777777666666665
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005106 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (714)
Q Consensus 595 qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai 665 (714)
+.+|+++|.++.++|++++|+..|++|++++|+++++++++|.++..+|++++|++.++|.|
T Consensus 50 ---------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 50 ---------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------chhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 56788999999999999999999999999999999999999999999999999999999976
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=2.3e-10 Score=117.78 Aligned_cols=204 Identities=9% Similarity=-0.046 Sum_probs=154.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHH--------------hcCCHHHHHHHHHHHHhc-CCC-HHHHHHHHHHHHhcCC
Q 005106 464 RWEDLDKATALDPTLSYPYMYRASSLM--------------TKQNVEAALAEINRILGF-KLA-LECLELRFCFFLALED 527 (714)
Q Consensus 464 Al~d~~kAi~LdP~~~~ay~~rg~~l~--------------~l~r~~eAl~~~~kAL~l-~P~-~~~~~~R~~~~~~lgd 527 (714)
+...|++|+...|.++..|.+-+.-+. ..+.+++|...|+||++. .|. ...|...+.+...+|+
T Consensus 35 v~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~ 114 (308)
T d2onda1 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 114 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence 445678888888888888877665443 334568999999999974 675 6677778889999999
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHH
Q 005106 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (714)
Q Consensus 528 ~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~ 607 (714)
+++|...|+++++..|.+.. .+......+....+..+. |..+|.+++...|.+...|
T Consensus 115 ~~~a~~i~~~~l~~~~~~~~-----~~w~~~~~~~~~~~~~~~------------------ar~i~~~al~~~~~~~~~~ 171 (308)
T d2onda1 115 YEKVHSIYNRLLAIEDIDPT-----LVYIQYMKFARRAEGIKS------------------GRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp HHHHHHHHHHHHTSSSSCTH-----HHHHHHHHHHHHHHCHHH------------------HHHHHHHHHTSTTCCTHHH
T ss_pred HHHHHHHHHHHHHHhcCChH-----HHHHHHHHHHHHcCChHH------------------HHHHHHHHHHhCCCcHHHH
Confidence 99999999999999998632 111121222222233333 3778999999999999999
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHhh
Q 005106 608 FRQSLLLLR-LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS----FEAFFLKAYALA 682 (714)
Q Consensus 608 ~~~g~~L~~-lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~----~~a~~~~~~~~~ 682 (714)
...|..... .|..+.|...|++++...|++++.+...+..+...|++++|-..|++|+...|. ...++.+-.-+.
T Consensus 172 ~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE 251 (308)
T d2onda1 172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999987655 589999999999999999999999999999999999999999999999997663 233444444443
Q ss_pred ccCCCCCc
Q 005106 683 DSSQDSSC 690 (714)
Q Consensus 683 ~~~~~~~~ 690 (714)
-.-=|.++
T Consensus 252 ~~~G~~~~ 259 (308)
T d2onda1 252 SNIGDLAS 259 (308)
T ss_dssp HHHSCHHH
T ss_pred HHcCCHHH
Confidence 33334443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.17 E-value=3.6e-12 Score=119.04 Aligned_cols=116 Identities=13% Similarity=0.055 Sum_probs=91.7
Q ss_pred hHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCC-H------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005106 479 SYPYMY--RASSLMTKQNVEAALAEINRILGFKLA-L------------ECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (714)
Q Consensus 479 ~~ay~~--rg~~l~~l~r~~eAl~~~~kAL~l~P~-~------------~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P 543 (714)
+.+|.+ +|..++..|+|++|+..|++||+++|+ + .+|.++|.+|..+|++++|+.++++++++.|
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 345555 488888999999999999999999875 2 3577899999999999999999999999987
Q ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHH
Q 005106 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (714)
Q Consensus 544 ~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeA 623 (714)
+....... .+ |....+++++|.++..+|++++|
T Consensus 87 ~~~~~~~~------------------~~-----------------------------~~~~~a~~~~g~~~~~lg~~eeA 119 (156)
T d2hr2a1 87 RRGELNQD------------------EG-----------------------------KLWISAVYSRALALDGLGRGAEA 119 (156)
T ss_dssp HHCCTTST------------------HH-----------------------------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccccc------------------cc-----------------------------chhHHHHhhhHHHHHHHHHHHHH
Confidence 64211000 00 11234789999999999999999
Q ss_pred HHHHHHHHHhCCCChhHH
Q 005106 624 MRSLQLARQHAASDHERL 641 (714)
Q Consensus 624 l~~~~~Al~l~P~~~ea~ 641 (714)
+.+|++|+++.|......
T Consensus 120 ~~~~~~Al~l~~~~~~~~ 137 (156)
T d2hr2a1 120 MPEFKKVVEMIEERKGET 137 (156)
T ss_dssp HHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHhhHHhhchH
Confidence 999999999988766554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.12 E-value=5.4e-11 Score=110.83 Aligned_cols=111 Identities=10% Similarity=-0.020 Sum_probs=84.2
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 005106 419 AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (714)
Q Consensus 419 ~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eA 498 (714)
.+.|..++..|++++|+..|+++|++.|+.+..+... ..|..+.+|.|+|.+|..+|++++|
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~------------------~~~~~a~~~~nlg~~~~~lg~~~~A 74 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD------------------HAGFDAFCHAGLAEALAGLRSFDEA 74 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC------------------HHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcc------------------cchhHHHHHHHHHHHHHHcCccchh
Confidence 3446677788888888888888877776654321100 0011245899999999999999999
Q ss_pred HHHHHHHHhcCC-------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 499 LAEINRILGFKL-------A-----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 499 l~~~~kAL~l~P-------~-----~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
+.+++++|++.| + ..+++++|.+|..+|++++|+.+|++|+++.|+...
T Consensus 75 ~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 75 LHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred hHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 999999998744 1 124678999999999999999999999999887643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.12 E-value=5e-10 Score=107.36 Aligned_cols=136 Identities=9% Similarity=-0.118 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchHH
Q 005106 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (714)
Q Consensus 512 ~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al~ 591 (714)
++.+..+|......||+++|+..|++|+++.|+..... +... .-
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~------------------~~~~------------------~w 54 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD------------------LRDF------------------QF 54 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG------------------GTTS------------------TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc------------------Ccch------------------HH
Confidence 45566778888899999999999999999988763210 0000 11
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH-------
Q 005106 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES------- 664 (714)
Q Consensus 592 ~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~A------- 664 (714)
...+...+.+....++.+++.++..+|++++|+..++++++++|.+..+|.+++.+++.+|++++|++.|+++
T Consensus 55 ~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~e 134 (179)
T d2ff4a2 55 VEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD 134 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 2344455666677889999999999999999999999999999999999999999999999999999999998
Q ss_pred HhcCCCHHHHHHHHHHhhc
Q 005106 665 IQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 665 i~i~~~~~a~~~~~~~~~~ 683 (714)
+.+.|+.+.--+..-.+..
T Consensus 135 LG~~P~~~l~~l~~~il~~ 153 (179)
T d2ff4a2 135 LGIDPGPTLRALNERILRQ 153 (179)
T ss_dssp HSCCCCHHHHHHHHHHHTT
T ss_pred hCCCcCHHHHHHHHHHHhC
Confidence 6688988854443333433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.2e-10 Score=99.85 Aligned_cols=78 Identities=10% Similarity=0.027 Sum_probs=72.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HH
Q 005106 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AF 674 (714)
Q Consensus 603 ~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~-------~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~ 674 (714)
+++-+|++|.++.+.|++++|+.+|++|+++.|.+ ++++.++|++++.+|++++|+..|++|++++|+++ |+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 45678999999999999999999999999997765 67899999999999999999999999999999999 99
Q ss_pred HHHHHH
Q 005106 675 FLKAYA 680 (714)
Q Consensus 675 ~~~~~~ 680 (714)
++.++.
T Consensus 84 ~Nl~~~ 89 (95)
T d1tjca_ 84 GNLKYF 89 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998774
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.03 E-value=9.6e-08 Score=94.74 Aligned_cols=208 Identities=13% Similarity=0.006 Sum_probs=141.6
Q ss_pred hhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----
Q 005106 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT---- 491 (714)
Q Consensus 416 ~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~---- 491 (714)
.+++++|..++..|++.+|+++| ++|.++ +++.+++++|.+|..
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~------------------------------~kAa~~--g~~~A~~~Lg~~y~~G~~~ 50 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYF------------------------------EKACDL--KENSGCFNLGVLYYQGQGV 50 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------------------HHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------------------HHHHHC--CCHHHHHHHHHHHHcCCCc
Confidence 45666777666666666665555 445443 466777778888776
Q ss_pred cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh
Q 005106 492 KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (714)
Q Consensus 492 l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~ 567 (714)
.+++..|+..+.++.... .+.+..+.+.++.. .++.+.|+..|+++.+..+....+ ..+.....
T Consensus 51 ~~d~~~a~~~~~~a~~~~-~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~--------~l~~~~~~--- 118 (265)
T d1ouva_ 51 EKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCA--------SLGGIYHD--- 118 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH--------HHHHHHHH---
T ss_pred chhHHHHHHhhccccccc-ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHH--------hhcccccC---
Confidence 678888888888888443 35555556655443 568888888888888877654221 11100000
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHH
Q 005106 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVY 643 (714)
Q Consensus 568 ~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~----lg~~eeAl~~~~~Al~l~P~~~ea~~~ 643 (714)
..........++..+. ...++.+..+++++|..+.. ...++.+...++.|.+ +.+++|+++
T Consensus 119 -----------~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~ 183 (265)
T d1ouva_ 119 -----------GKVVTRDFKKAVEYFT--KACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFN 183 (265)
T ss_dssp -----------CSSSCCCHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred -----------CCcccchhHHHHHHhh--hhhcccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccc
Confidence 0000001111222333 34557888999999999997 6778889999999886 568999999
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Q 005106 644 EGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (714)
Q Consensus 644 ~G~~ly~----~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~ 683 (714)
+|.+++. ..++++|+..|++|.+.. +..|+|+-|+.+..
T Consensus 184 lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 184 AGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYN 226 (265)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred hhhhcccCcccccchhhhhhhHhhhhccc-CHHHHHHHHHHHHc
Confidence 9999987 679999999999999885 35599999998886
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=7.7e-10 Score=94.55 Aligned_cols=89 Identities=10% Similarity=-0.125 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccchH
Q 005106 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (714)
Q Consensus 511 ~~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~~d~~al 590 (714)
+++..+..|.++...|||++|+..|++|+++.|++..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~------------------------------------------- 40 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI------------------------------------------- 40 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------------------------------
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-------------------------------------------
Confidence 4566788999999999999999999999999887621
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 591 ~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
..+..+++++++|.++.++|++++|+..|++|++++|++++++.|++.+...
T Consensus 41 --------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~ 92 (95)
T d1tjca_ 41 --------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYI 92 (95)
T ss_dssp --------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred --------cCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 1244567889999999999999999999999999999999999999876544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.84 E-value=4.6e-09 Score=100.46 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 005106 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (714)
Q Consensus 381 q~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~ 460 (714)
....++...|......|++++|+..|.+||++.+...+.+. +...|++
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~------------------------~~~~w~~-------- 56 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL------------------------RDFQFVE-------- 56 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG------------------------TTSTTHH--------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC------------------------cchHHHH--------
Confidence 34556667777777777777777777777776333221110 0111222
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005106 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (714)
Q Consensus 461 ~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~a 538 (714)
..+..+.|....++.++|.++..+|++++|+..++++|+++|. ...|.+++.++..+|++++|++.|+++
T Consensus 57 --------~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 57 --------PFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2234444555677788888888888888888888888888884 666777788888888888888888877
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.74 E-value=7.7e-09 Score=105.03 Aligned_cols=134 Identities=7% Similarity=-0.094 Sum_probs=80.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhh
Q 005106 489 LMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (714)
Q Consensus 489 l~~l~r~~eAl~~~~kAL~l~P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~ 567 (714)
.+..|++++|++.|+++|+.+|+ +..+.+++.+|...|++++|+..|+++++++|++.. +....+.+....+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~------~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP------GASQLRHLVKAAQA 79 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH------HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHhccc
Confidence 34556666666666666666664 566666666666666666666666666666666632 12222222222222
Q ss_pred hhHHHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 005106 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (714)
Q Consensus 568 ~~~A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G 645 (714)
.+++.. . .. ...+..+|.....+..++.++.+.|+.++|.+.+++|.++.|+.+..+...+
T Consensus 80 ~~~a~~------~---~~--------~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~~ 140 (264)
T d1zbpa1 80 RKDFAQ------G---AA--------TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140 (264)
T ss_dssp HHHHTT------S---CC--------CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEE
T ss_pred cHHHHH------H---hh--------hhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccccC
Confidence 222210 0 00 0012235666677778888889999999999999999999998887655443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.67 E-value=1.3e-08 Score=103.33 Aligned_cols=121 Identities=13% Similarity=-0.024 Sum_probs=88.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhc----CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 005106 427 IKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEI 502 (714)
Q Consensus 427 ~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~----~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~ 502 (714)
..|++++|++.+.++|+.+|+++.++.+++.. |+.++|+..|+++++++|++..++.+++.++...++.+++...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~ 87 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGA 87 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHh
Confidence 34555555555555555555555555444432 44466677778888889999999999999998888888888877
Q ss_pred HHHHhcC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 005106 503 NRILGFK-LA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (714)
Q Consensus 503 ~kAL~l~-P~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~ 547 (714)
.+...+. |+ ...+..++.++...|++++|+..++++.++.|+...
T Consensus 88 ~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 88 ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred hhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 7766553 43 455566788999999999999999999999999753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.03 E-value=8.6e-06 Score=72.33 Aligned_cols=76 Identities=17% Similarity=0.070 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 005106 604 GVLYFRQSLLLLRLNCP---EAAMRSLQLARQHAASDH-ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (714)
Q Consensus 604 ~~~~~~~g~~L~~lg~~---eeAl~~~~~Al~l~P~~~-ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~-a~~~~~ 678 (714)
+...|+.|.+|.+-... ++|+..++.+++.+|.+. +.+|++|.++|++|+|++|...++++++++|++. |-.||-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 67899999999986554 589999999999999875 9999999999999999999999999999999998 766664
Q ss_pred H
Q 005106 679 Y 679 (714)
Q Consensus 679 ~ 679 (714)
.
T Consensus 115 ~ 115 (124)
T d2pqrb1 115 M 115 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.88 E-value=9.3e-05 Score=65.70 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=80.4
Q ss_pred cchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 005106 397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP 476 (714)
Q Consensus 397 g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP 476 (714)
+++++|+.+|++|.+.++..+..++|.. ...+ .++|+..|++|.+.
T Consensus 7 kd~~~A~~~~~kaa~~g~~~a~~~l~~~--~~~~------------------------------~~~a~~~~~~aa~~-- 52 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEMFGCLSLVSN--SQIN------------------------------KQKLFQYLSKACEL-- 52 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHHHHHHTC--TTSC------------------------------HHHHHHHHHHHHHT--
T ss_pred cCHHHHHHHHHHHHHCCChhhhhhhccc--cccC------------------------------HHHHHHHHhhhhcc--
Confidence 4788999999999888888777766531 1122 25666666666653
Q ss_pred CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCc
Q 005106 477 TLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPDY 545 (714)
Q Consensus 477 ~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P~~~~~~~R~~~~~~----lgd~e~Al~d~~~al~L~P~~ 545 (714)
+++.+.+++|.+|.. ..++++|+..|+++.+.. ++.+.+++|.+|.. ..|+++|+..|++|.++....
T Consensus 53 g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~ 128 (133)
T d1klxa_ 53 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSED 128 (133)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHH
Confidence 577777888877775 456788888888888643 35666677777665 458888888888888876554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.87 E-value=6.6e-05 Score=66.72 Aligned_cols=112 Identities=11% Similarity=-0.008 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHh
Q 005106 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVIS 443 (714)
Q Consensus 364 ~~~~LLe~Lv~~a~~~lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~ 443 (714)
....+++++.+.. +..+.+.+|. ...+++++|+.+|++|.+.++..+.+.+|.+|.. |..
T Consensus 11 ~A~~~~~kaa~~g-----~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~-g~~------------ 70 (133)
T d1klxa_ 11 KAIQYYVKACELN-----EMFGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYEN-GKY------------ 70 (133)
T ss_dssp HHHHHHHHHHHTT-----CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-CSS------------
T ss_pred HHHHHHHHHHHCC-----Chhhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhh-ccc------------
Confidence 4455555543321 2345566664 4557899999999999999999999999987764 210
Q ss_pred cCCCcHHHHHHHHhcCChhHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 005106 444 SVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKL 510 (714)
Q Consensus 444 ~~p~~~~ay~~rg~~~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~----l~r~~eAl~~~~kAL~l~P 510 (714)
.-...++|+..|.+|.+. .++.+.+++|.+|.. .+++++|+..|++|.++..
T Consensus 71 -------------~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 71 -------------VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp -------------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -------------cchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 001225566666666654 467788888888887 5689999999999987654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.66 E-value=0.00017 Score=63.75 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=70.5
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005106 468 LDKATALDPTLSYPYMYRASSLMTKQN---VEAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLS 542 (714)
Q Consensus 468 ~~kAi~LdP~~~~ay~~rg~~l~~l~r---~~eAl~~~~kAL~l~P~--~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~ 542 (714)
|.+...-.|+ +.+.++.|-++..... .++||..++.++..+|. -++++++|..|..+|+|++|++.++++++++
T Consensus 25 ~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 25 VVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp HHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3444333444 6788888888886644 56899999999999984 4899999999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHHHHh
Q 005106 543 PDYRMFEGRVAASQLHMLVREH 564 (714)
Q Consensus 543 P~~~~~~~~~~a~~~~~~l~~~ 564 (714)
|++ ..+..++..+...
T Consensus 104 P~n------~qA~~L~~~Ie~~ 119 (124)
T d2pqrb1 104 RNN------KQVGALKSMVEDK 119 (124)
T ss_dssp TTC------HHHHHHHHHHHHH
T ss_pred CCc------HHHHHHHHHHHHH
Confidence 999 4455555555444
|
| >d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=6.5e-05 Score=63.70 Aligned_cols=80 Identities=24% Similarity=0.396 Sum_probs=58.9
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcC--CCCcCCcceEEeCCCCCCHHHHHHHHHhhcc-----C------CCCC
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVT-----G------SLNG 249 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~--~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Yt-----g------~l~~ 249 (714)
|+|+- +|..|.+.+.+ |..|..++.||.+ ++.|+....|.|+ +|+..+|+.+++|++- + ..+
T Consensus 3 i~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~--nV~s~iL~kViey~~~h~~~~~~~~~~~~fd- 78 (96)
T d2c9wc1 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP- 78 (96)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHC------------CEEECT--TCCHHHHHHHHHHHHHHHHTC----CCCCCC-
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhccCccccCCCCeeECC--CCCHHHHHHHHHHHHhhccCcCCcCCCCCCc-
Confidence 45555 78889999998 8899999999964 4566777889999 5999999999999952 2 223
Q ss_pred CCHHHHHHHHHHHhhhCh
Q 005106 250 VTPNLLLEILIFANKFCC 267 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v 267 (714)
++++.+.+|+.||++++|
T Consensus 79 i~~~~l~eLi~AAnyLd~ 96 (96)
T d2c9wc1 79 IAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHhhhcC
Confidence 778899999999999875
|
| >d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.29 E-value=0.0006 Score=57.82 Aligned_cols=79 Identities=23% Similarity=0.363 Sum_probs=65.4
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhcc-----------C---CCC
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT-----------G---SLN 248 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Yt-----------g---~l~ 248 (714)
|+|+- +|..|.+.+.+ |..|..++.|+.+.+.|+. ..|.++ +|+..+|+.+++|++- + ..+
T Consensus 6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~~-~~Ipl~--~V~s~iL~kViey~~~h~~~~~~~~~~~~~~efd 81 (99)
T d1hv2a_ 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESK-GRIELK--QFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFE 81 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCT-TEEEET--TSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCC
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCCc-CccccC--CCChHHHHHHHHHHHHhhhCcCcccccccCCCCC
Confidence 66766 77899999998 7799999999988776654 579998 5999999999999963 1 233
Q ss_pred CCCHHHHHHHHHHHhhhCh
Q 005106 249 GVTPNLLLEILIFANKFCC 267 (714)
Q Consensus 249 ~i~~~~v~~lL~aAd~~~v 267 (714)
++.+.+.+|+.||+++++
T Consensus 82 -vd~~~l~eLi~AAnyLdI 99 (99)
T d1hv2a_ 82 -IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp -CCHHHHHHHHHHHHHHCC
T ss_pred -CCHHHHHHHHHHHhhhCC
Confidence 678889999999999875
|
| >d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Potassium channel kv4.2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.96 E-value=0.00023 Score=61.24 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=68.5
Q ss_pred EEEEEcCeEEEeehhhhhcCCH-HHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILIF 261 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S~-yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~~lL~a 261 (714)
|+|.|||+.|...+..|..... +|..|+..........++-|. =+|..|+.+|+|+.+|++. ++++ .+..++.=
T Consensus 2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~FiD---Rdp~~F~~IL~ylR~G~l~-~p~~~~~~~l~~E 77 (105)
T d1nn7a_ 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKLH-YPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCBC-CCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEEe---CCHHHHHHHHHHHhcCccc-cCCCccHHHHHHH
Confidence 7899999999999999976533 455555544444555677776 6899999999999999988 5543 46778888
Q ss_pred HhhhChhhH--HHHHHHHH
Q 005106 262 ANKFCCERL--KDACDRKL 278 (714)
Q Consensus 262 Ad~~~v~~L--~~~C~~~L 278 (714)
|++|+|+.+ ..-|.+.+
T Consensus 78 a~fygi~~~~l~~cc~~~~ 96 (105)
T d1nn7a_ 78 LAFFGLIPEIIGDCCYEEY 96 (105)
T ss_dssp HHHHTCCSCCBCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH
Confidence 999999763 24455544
|
| >d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: akv3.1 voltage-gated potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Probab=96.90 E-value=0.00021 Score=61.24 Aligned_cols=88 Identities=11% Similarity=0.156 Sum_probs=67.2
Q ss_pred EEEEEcCeEEEeehhhhhcCCH-HHHHhhcCCCC-cCCcceEEeCCCCCCHHHHHHHHHhhccCCCCCCCHH-HHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNGSFM-ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILI 260 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~S~-yF~amF~~~~~-Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg~l~~i~~~-~v~~lL~ 260 (714)
|+|.|||+.|...+..|..... +|..|+.+... .+....+-|. -+|..|+.||+|+.+|++. ++++ .+..++.
T Consensus 4 I~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylR~g~l~-~p~~~~~~~l~~ 79 (103)
T d3kvta_ 4 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD---RHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE 79 (103)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC---SCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEec---CCHHHHHHHHHHHccCCcc-cccccCHHHHHH
Confidence 7899999999999999976543 55556554332 2334567776 7999999999999999998 6544 4677888
Q ss_pred HHhhhChh-hHHHHHH
Q 005106 261 FANKFCCE-RLKDACD 275 (714)
Q Consensus 261 aAd~~~v~-~L~~~C~ 275 (714)
=|++|+|+ .+++.|+
T Consensus 80 Ea~yygi~~~~l~~Cc 95 (103)
T d3kvta_ 80 ELEFWGLDSNQVEPCC 95 (103)
T ss_dssp HHHHHTCCGGGBCGGG
T ss_pred HHHHcCCCHHHHHHHh
Confidence 89999997 4566664
|
| >d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Shaker potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Probab=96.27 E-value=0.0023 Score=54.17 Aligned_cols=82 Identities=11% Similarity=0.048 Sum_probs=63.4
Q ss_pred EEEEEcCeEEEeehhhhhcC-CHHHHHhhcCCC-CcCCcceEEeCCCCCCHHHHHHHHHhhccC-CCCCCCH-HHHHHHH
Q 005106 184 VVFRIHEEKIECDRQKFAAL-SAPFSAMLNGSF-MESLCEDIDLSENNISPSGLRIISDFSVTG-SLNGVTP-NLLLEIL 259 (714)
Q Consensus 184 V~l~v~~~~f~aHr~VLAa~-S~yF~amF~~~~-~Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg-~l~~i~~-~~v~~lL 259 (714)
|+|.|||+.|...+..|... +.+|..|+..+. ......++-|. -+|..|+.||+|+.|| .+. .+. ..+..++
T Consensus 3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~FiD---Rdp~~F~~IL~flR~~~~l~-~~~~~~~~~l~ 78 (100)
T d1t1da_ 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD---RNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC---SCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEEe---cCHHHHHHHHHHHhcCCCcC-CCCcccHHHHH
Confidence 78999999999999999875 557777776432 23444678886 6899999999999985 554 433 3467888
Q ss_pred HHHhhhChhh
Q 005106 260 IFANKFCCER 269 (714)
Q Consensus 260 ~aAd~~~v~~ 269 (714)
.-|++|+|+.
T Consensus 79 ~Ea~y~gi~~ 88 (100)
T d1t1da_ 79 EEIKFYELGE 88 (100)
T ss_dssp HHHHHTTCCH
T ss_pred HHHHHcCCCH
Confidence 9999999986
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.88 E-value=0.65 Score=48.15 Aligned_cols=210 Identities=11% Similarity=-0.016 Sum_probs=130.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH-HH-----hc--CChhHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 005106 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE-RS-----LY--CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK 492 (714)
Q Consensus 421 lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~-rg-----~~--~~~~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l 492 (714)
.|.......+.+.|...+.+.....+-.+..... +. .. +..+.|...++....-..+.....-..+.+ ...
T Consensus 220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~a-l~~ 298 (450)
T d1qsaa1 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LGT 298 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHH
T ss_pred HHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHH-HHc
Confidence 4445555678888888777665554433322222 11 11 223566666665554444444333334444 445
Q ss_pred CCHHHHHHHHHHHHhcCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHhhhhhhH
Q 005106 493 QNVEAALAEINRILGFKL-A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (714)
Q Consensus 493 ~r~~eAl~~~~kAL~l~P-~-~~~~~~R~~~~~~lgd~e~Al~d~~~al~L~P~~~~~~~~~~a~~~~~~l~~~~~~~~~ 570 (714)
++...+...++.. .-.| + +...+-.|..+..+|+.++|...|.++.. .|+ |||..++..+.... ..
T Consensus 299 ~~~~~~~~~~~~l-~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~~---fYG~LAa~~Lg~~~-------~~ 366 (450)
T d1qsaa1 299 GDRRGLNTWLARL-PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QRG---FYPMVAAQRIGEEY-------EL 366 (450)
T ss_dssp TCHHHHHHHHHHS-CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCS---HHHHHHHHHTTCCC-------CC
T ss_pred CChHHHHHHHHhc-CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CCC---hHHHHHHHHcCCCC-------CC
Confidence 7888888777653 2233 2 45557788899999999999999999976 454 68877766653210 00
Q ss_pred HHHHHhhhhccccccccchHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHh
Q 005106 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (714)
Q Consensus 571 A~~~~~l~~~~~~~~d~~al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~ 650 (714)
........ ....+...| -+.++..|..+|...+|.+-++.+++-. +..-+...+.+-.+
T Consensus 367 ---------~~~~~~~~-----~~~~~~~~~-----~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~ 425 (450)
T d1qsaa1 367 ---------KIDKAPQN-----VDSALTQGP-----EMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFN 425 (450)
T ss_dssp ---------CCCCCCSC-----CCCHHHHSH-----HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHH
T ss_pred ---------CcCCCCcc-----HHHhhhcCh-----HHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHH
Confidence 00000000 011233333 2457888999999999999998887643 45567788999999
Q ss_pred cCCHHHHHHHHHHH
Q 005106 651 TSHCEEGLRKAEES 664 (714)
Q Consensus 651 ~G~~eeAl~~ye~A 664 (714)
.|.++.||....++
T Consensus 426 ~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 426 NQWWDLSVQATIAG 439 (450)
T ss_dssp TTCHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHH
Confidence 99999999877776
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.28 E-value=5.1 Score=40.90 Aligned_cols=291 Identities=9% Similarity=-0.029 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhccchhhHhhHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHhcC
Q 005106 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (714)
Q Consensus 380 lq~~~A~~~lG~~~~~~g~y~eA~~~f~~AL~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~aI~~~p~~~~ay~~rg~~~ 459 (714)
+.+..+.|..+...+..|++.++...-.+ |+-.|-+.|...-.+....++. ....+..-|..+|+.+.+-.-|....
T Consensus 3 l~~~r~~y~~a~~a~~~~~~~~~~~~~~~-L~dypL~pYl~~~~l~~~~~~~--~~~~i~~Fl~~~p~~P~~~~lr~~~l 79 (450)
T d1qsaa1 3 LDEQRSRYAQIKQAWDNRQMDVVEQMMPG-LKDYPLYPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFV 79 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHSGG-GTTSTTHHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHhh-hcCCCCHHHHHHHHHHhccccC--CHHHHHHHHHHCCCChhHHHHHHHHH
Confidence 34556677888888888998887665444 3312333333322222222221 23456778888999876654443220
Q ss_pred Ch---hHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CC----------------HHHHHH
Q 005106 460 EG---DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK---LA----------------LECLEL 517 (714)
Q Consensus 460 ~~---~eAl~d~~kAi~LdP~~~~ay~~rg~~l~~l~r~~eAl~~~~kAL~l~---P~----------------~~~~~~ 517 (714)
.. .+-...|-+-..-.|.....-+..+.++...|+-++|...+..+..-. |+ ++.+..
T Consensus 80 ~~L~~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~ 159 (450)
T d1qsaa1 80 NELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLE 159 (450)
T ss_dssp HHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHhccCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHH
Confidence 00 001112222223457778888889999999999999999888777542 22 222233
Q ss_pred HHHHHHhcCCHHHHHHHHHH-------------HHhhCCCchhhhh-------hHHHHHHHHHHHHhhhhhhHHHH-HHh
Q 005106 518 RFCFFLALEDYQAALCDVQA-------------ILTLSPDYRMFEG-------RVAASQLHMLVREHIDNWTIADC-WLQ 576 (714)
Q Consensus 518 R~~~~~~lgd~e~Al~d~~~-------------al~L~P~~~~~~~-------~~~a~~~~~~l~~~~~~~~~A~~-~~~ 576 (714)
|.......|++..|..-... ++.-+|....... ........+..+...++.+.|.. |.+
T Consensus 160 R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~ 239 (450)
T d1qsaa1 160 RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPS 239 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHh
Confidence 55556667777666554432 2223444321100 00011111112222222222221 111
Q ss_pred ------------------hhhccccccccc-hHHHHHHHHHhCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005106 577 ------------------LYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (714)
Q Consensus 577 ------------------l~~~~~~~~d~~-al~~~~qaL~l~P~~~~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~ 637 (714)
+...+...+... +....+.............-..+.++ +.++..++...++..-.-....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al-~~~~~~~~~~~~~~l~~~~~~~ 318 (450)
T d1qsaa1 240 LAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTGDRRGLNTWLARLPMEAKEK 318 (450)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGS
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHH-HcCChHHHHHHHHhcCcccccH
Confidence 111111112222 33455555555444444444455544 4578888888776554333345
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHH
Q 005106 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 675 (714)
Q Consensus 638 ~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~ 675 (714)
+...|..|-.+..+|+-++|-..|+++-. +|+|=.|.
T Consensus 319 ~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~~fYG~L 355 (450)
T d1qsaa1 319 DEWRYWQADLLLERGREAEAKEILHQLMQ-QRGFYPMV 355 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCSHHHHH
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhc-CCChHHHH
Confidence 77889999999999999999999998875 78876553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.61 E-value=13 Score=36.82 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcc
Q 005106 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 684 (714)
Q Consensus 605 ~~~~~~g~~L~~lg~~eeAl~~~~~Al~l~P~~~ea~~~~G~~ly~~G~~eeAl~~ye~Ai~i~~~~~a~~~~~~~~~~~ 684 (714)
.+|--...++.+.|.+++|+.. .+++-|+..+...... +..+.++-+-.++.-.--+.-+|.+- .....-..+
T Consensus 175 ~l~~elv~Ly~~~~~~~~A~~~---~i~~~~~~~~~~~f~e-~~~k~~N~e~~~~~i~~yL~~~p~~i---~~lL~~v~~ 247 (336)
T d1b89a_ 175 HLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKD-IITKVANVELYYRAIQFYLEFKPLLL---NDLLMVLSP 247 (336)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHH-HHHHCSSTHHHHHHHHHHHHHCGGGH---HHHHHHHGG
T ss_pred CChHHHHHHHHhcCCHHHHHHH---HHHcchhhhhHHHHHH-HHHccCChHHHHHHHHHHHHcCHHHH---HHHHHHhcc
Confidence 3455566777788888877654 4444444333222222 24455565555444444455566554 334445566
Q ss_pred CCCCCchhhHHHHHHHhh
Q 005106 685 SQDSSCSSTVVSLLEDAL 702 (714)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~ 702 (714)
.+|| +.||+.+|...
T Consensus 248 ~~d~---~r~V~~~~k~~ 262 (336)
T d1b89a_ 248 RLDH---TRAVNYFSKVK 262 (336)
T ss_dssp GCCH---HHHHHHHHHTT
T ss_pred CCCH---HHHHHHHHhcC
Confidence 7777 45777766543
|
| >d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Cyclin A/CDK2-associated p45, Skp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.33 E-value=0.46 Score=35.68 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=43.9
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCCcCCcceEEeCCCCCCHHHHHHHHHhhcc
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT 244 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~Es~~~~I~l~~~~i~~~~~~~lL~f~Yt 244 (714)
|+|+- +|..|.+.+. .|..|.-.+.|+.+.- ...|.|+ +|+..+|+.+++|++-
T Consensus 3 I~L~SsDg~~f~v~~~-~a~~S~tI~~ml~~~~----~~~Ipl~--~V~s~iL~kVieyc~~ 57 (61)
T d1fs1b2 3 IKLQSSDGEIFEVDVE-IAKQSVTIKTMLEDLG----MDPVPLP--NVNAAILKKVIQWCTH 57 (61)
T ss_dssp EEEECTTSCEEEEEGG-GGGTCHHHHHHHHHTC----CSSEECT--TCCHHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEecHH-HHHHhHHHHHHHhcCC----CCCcccC--CcCHHHHHHHHHHHHH
Confidence 55655 7889999888 5788999999997532 3468998 5999999999999874
|
| >d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Skp1 dimerisation domain-like superfamily: Skp1 dimerisation domain-like family: Skp1 dimerisation domain-like domain: Cyclin A/CDK2-associated p45, Skp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.76 E-value=0.41 Score=35.29 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
+..+.+.+|+.||++++++.|.+.|++.++..+.
T Consensus 10 ~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ik 43 (55)
T d1fs1b1 10 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 43 (55)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHc
Confidence 6688999999999999999999999999999885
|
| >d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.74 E-value=0.57 Score=36.29 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=42.8
Q ss_pred EEEEE-cCeEEEeehhhhhcCCHHHHHhhcCCCC----cCCcceEEeCCCCCCHHHHHHHHHhhccC
Q 005106 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTG 245 (714)
Q Consensus 184 V~l~v-~~~~f~aHr~VLAa~S~yF~amF~~~~~----Es~~~~I~l~~~~i~~~~~~~lL~f~Ytg 245 (714)
|+|+- +|..|.+.+. .|..|..-+.|+..... +.....|.|+ +|+..+|+.+++|++.-
T Consensus 3 I~L~SsDg~~F~v~~~-~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~--~V~s~iL~kVieyc~~H 66 (72)
T d1nexa2 3 VVLVSGEGERFTVDKK-IAERSLLLKNYLNDMGDDDDEDDDEIVMPVP--NVRSSVLQKVIEWAEHH 66 (72)
T ss_dssp EEEECTTSCEEEEEHH-HHTTSHHHHHTC-------------CEEECT--TCCHHHHHHHHHHHHHT
T ss_pred eEEEeCCCCEEEecHH-HHHHHHHHHHHHHhcCccccccCCCCcccCC--CcCHHHHHHHHHHHHHc
Confidence 66766 7889999888 56889999999974322 2333578998 59999999999999753
|
| >d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Skp1 dimerisation domain-like superfamily: Skp1 dimerisation domain-like family: Skp1 dimerisation domain-like domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.49 E-value=0.69 Score=35.76 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHhhhChhhHHHHHHHHHHhhcC
Q 005106 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (714)
Q Consensus 250 i~~~~v~~lL~aAd~~~v~~L~~~C~~~L~~~l~ 283 (714)
+..+.+.+|+.||++++++.|.+.|++.++..+.
T Consensus 11 ~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ik 44 (70)
T d1nexa1 11 VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 44 (70)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHc
Confidence 6688999999999999999999999999999885
|