Citrus Sinensis ID: 005109
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 714 | 2.2.26 [Sep-21-2011] | |||||||
| Q05001 | 714 | NADPH--cytochrome P450 re | N/A | no | 0.985 | 0.985 | 0.770 | 0.0 | |
| Q9SUM3 | 711 | NADPH--cytochrome P450 re | yes | no | 0.973 | 0.977 | 0.745 | 0.0 | |
| P37116 | 690 | NADPH--cytochrome P450 re | N/A | no | 0.932 | 0.965 | 0.701 | 0.0 | |
| Q9SB48 | 692 | NADPH--cytochrome P450 re | no | no | 0.928 | 0.958 | 0.662 | 0.0 | |
| Q3SYT8 | 678 | NADPH--cytochrome P450 re | yes | no | 0.887 | 0.935 | 0.379 | 1e-129 | |
| P16435 | 677 | NADPH--cytochrome P450 re | yes | no | 0.914 | 0.964 | 0.374 | 1e-129 | |
| P04175 | 678 | NADPH--cytochrome P450 re | yes | no | 0.907 | 0.955 | 0.378 | 1e-128 | |
| P00389 | 679 | NADPH--cytochrome P450 re | yes | no | 0.890 | 0.936 | 0.378 | 1e-128 | |
| P00388 | 678 | NADPH--cytochrome P450 re | yes | no | 0.897 | 0.945 | 0.383 | 1e-128 | |
| P37040 | 678 | NADPH--cytochrome P450 re | yes | no | 0.897 | 0.945 | 0.381 | 1e-127 |
| >sp|Q05001|NCPR_CATRO NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/715 (77%), Positives = 632/715 (88%), Gaps = 11/715 (1%)
Query: 9 ESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVE--VASIVLDNKEFVMILTTSIAVLI 66
+S + K+SPF+LMSAI++G K+D SN S SG V V +++L+NKE VMILTTS+AVLI
Sbjct: 2 DSSSEKLSPFELMSAILKGAKLDGSNSSDSGVAVSPAVMAMLLENKELVMILTTSVAVLI 61
Query: 67 GCVVVFILRRSSSSKPKKVEPLKPLVVK---EPEVEVDDGKQKVTIFFGTQTGTAEGFAK 123
GCVVV I RRSS S K VEP K +V K EPE E+D+GK+K TIFFGTQTGTAEGFAK
Sbjct: 62 GCVVVLIWRRSSGSGKKVVEPPKLIVPKSVVEPE-EIDEGKKKFTIFFGTQTGTAEGFAK 120
Query: 124 ALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183
ALA+EA+ARY+KA+ KV+DIDDYA +++EYEEK +KE + FF LATYGDGEPTDNAARFY
Sbjct: 121 ALAEEAKARYEKAVIKVIDIDDYAADDEEYEEKFRKETLAFFILATYGDGEPTDNAARFY 180
Query: 184 KWFTE-KEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ 242
KWF E + G+WL+ L+YGVFGLGNRQYEHFNKIAKVVDE +A QG KR+VP+ LGDDDQ
Sbjct: 181 KWFVEGNDRGDWLKNLQYGVFGLGNRQYEHFNKIAKVVDEKVAEQGGKRIVPLVLGDDDQ 240
Query: 243 CIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSW-- 300
CIEDDF+AWRE VWPELDNLLRD+DD TTVST YTAAI EYRVVF D +D+ + E +
Sbjct: 241 CIEDDFAAWRENVWPELDNLLRDEDD-TTVSTTYTAAIPEYRVVFPDKSDSLISEANGHA 299
Query: 301 -GNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCE 359
G ANG+ VYDAQHPCRSNVAVRKELHTP+SDRSCTHL+FDIAGTGL+Y TGDHVGVYC+
Sbjct: 300 NGYANGNTVYDAQHPCRSNVAVRKELHTPASDRSCTHLDFDIAGTGLSYGTGDHVGVYCD 359
Query: 360 NLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSS 419
NLSETVEEA LL L P+TYFSLH DKEDGTPL S+LPP FPPC+LRTALT+YADLL++
Sbjct: 360 NLSETVEEAERLLNLPPETYFSLHADKEDGTPLAGSSLPPPFPPCTLRTALTRYADLLNT 419
Query: 420 PKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLG 479
PKKSALLALAA+ASDP EADRL++LASPAGKDEYAQ +VA+QRSLLEVM+EFPSAKPPLG
Sbjct: 420 PKKSALLALAAYASDPNEADRLKYLASPAGKDEYAQSLVANQRSLLEVMAEFPSAKPPLG 479
Query: 480 VFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPME 539
VFFAAI PRLQPR+YSISSSPR+APSRIHVTCALVYEKTP GR+HKG+CSTWMKN++P+E
Sbjct: 480 VFFAAIAPRLQPRFYSISSSPRMAPSRIHVTCALVYEKTPGGRIHKGVCSTWMKNAIPLE 539
Query: 540 KSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSL 599
+S DCSWAPIFVRQSNFKLPAD KVP+IMIGPGTGLAPFRGFLQER AL+E GAELG ++
Sbjct: 540 ESRDCSWAPIFVRQSNFKLPADPKVPVIMIGPGTGLAPFRGFLQERLALKEEGAELGTAV 599
Query: 600 LFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLS 659
FFGCRNRKMDYIYEDELN+F++ GALS+L+VAFSREGPTK+YVQHKM EK+SDIW M+S
Sbjct: 600 FFFGCRNRKMDYIYEDELNHFLEIGALSELLVAFSREGPTKQYVQHKMAEKASDIWRMIS 659
Query: 660 EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
+GAY+YVCGDAK MARDVHRTLHTI QEQGS+DS++AE VKNLQMTGRYLRDVW
Sbjct: 660 DGAYVYVCGDAKGMARDVHRTLHTIAQEQGSMDSTQAEGFVKNLQMTGRYLRDVW 714
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Catharanthus roseus (taxid: 4058) EC: 1EC: .EC: 6EC: .EC: 2EC: .EC: 4 |
| >sp|Q9SUM3|NCPR2_ARATH NADPH--cytochrome P450 reductase 2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/702 (74%), Positives = 618/702 (88%), Gaps = 7/702 (0%)
Query: 18 FDLMSAIIRGGKV---DPSNVSSSGS-GVEVASIVLDNKEFVMILTTSIAVLIGCVVVFI 73
DLM+AII+G V DP+N S+ S E++S++++N++F MI+TTSIAVLIGC+V+ +
Sbjct: 12 IDLMAAIIKGEPVIVSDPANASAYESVAAELSSMLIENRQFAMIVTTSIAVLIGCIVMLV 71
Query: 74 LRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARY 133
RRS S K+VEPLKPLV+K E E+DDG++KVTIFFGTQTGTAEGFAKAL +EA+ARY
Sbjct: 72 WRRSGSGNSKRVEPLKPLVIKPREEEIDDGRKKVTIFFGTQTGTAEGFAKALGEEAKARY 131
Query: 134 DKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE-KEGG 192
+K FK+VD+DDYA ++DEYEEKLKKE++ FFFLATYGDGEPTDNAARFYKWFTE + G
Sbjct: 132 EKTRFKIVDLDDYAADDDEYEEKLKKEDVAFFFLATYGDGEPTDNAARFYKWFTEGNDRG 191
Query: 193 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 252
EWL+ LKYGVFGLGNRQYEHFNK+AKVVD+IL QGA+RLV VGLGDDDQCIEDDF+AWR
Sbjct: 192 EWLKNLKYGVFGLGNRQYEHFNKVAKVVDDILVEQGAQRLVQVGLGDDDQCIEDDFTAWR 251
Query: 253 ELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQ 312
E +WPELD +LR++ D T V+TPYTAA+ EYRV +D+ DA + + N NG+ V+DAQ
Sbjct: 252 EALWPELDTILREEGD-TAVATPYTAAVLEYRVSIHDSEDAKFNDINMANGNGYTVFDAQ 310
Query: 313 HPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLL 372
HP ++NVAV++ELHTP SDRSC HLEFDIAG+GLTYETGDHVGV C+NLSETV+EAL LL
Sbjct: 311 HPYKANVAVKRELHTPESDRSCIHLEFDIAGSGLTYETGDHVGVLCDNLSETVDEALRLL 370
Query: 373 GLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHA 432
+SPDTYFSLH +KEDGTP+ S PP PPC+LRTALT+YA LLSSPKKSAL+ALAAHA
Sbjct: 371 DMSPDTYFSLHAEKEDGTPISSSLPPPF-PPCNLRTALTRYACLLSSPKKSALVALAAHA 429
Query: 433 SDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPR 492
SDPTEA+RL+HLASPAGKDEY++W+V SQRSLLEVM+EFPSAKPPLGVFFA + PRLQPR
Sbjct: 430 SDPTEAERLKHLASPAGKDEYSKWVVESQRSLLEVMAEFPSAKPPLGVFFAGVAPRLQPR 489
Query: 493 YYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552
+YSISSSP++A +RIHVTCALVYEK PTGR+HKG+CSTWMKN++P EKS +CS APIFVR
Sbjct: 490 FYSISSSPKIAETRIHVTCALVYEKMPTGRIHKGVCSTWMKNAVPYEKSENCSSAPIFVR 549
Query: 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYI 612
QSNFKLP+D+KVPIIMIGPGTGLAPFRGFLQER AL E+G ELGPS+LFFGCRNR+MD+I
Sbjct: 550 QSNFKLPSDSKVPIIMIGPGTGLAPFRGFLQERLALVESGVELGPSVLFFGCRNRRMDFI 609
Query: 613 YEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS 672
YE+EL FV+SGAL++L VAFSREGPTKEYVQHKMM+K+SDIWNM+S+GAYLYVCGDAK
Sbjct: 610 YEEELQRFVESGALAELSVAFSREGPTKEYVQHKMMDKASDIWNMISQGAYLYVCGDAKG 669
Query: 673 MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
MARDVHR+LHTI QEQGS+DS+KAE VKNLQ +GRYLRDVW
Sbjct: 670 MARDVHRSLHTIAQEQGSMDSTKAEGFVKNLQTSGRYLRDVW 711
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Reduces a variety of substrates in vitro, such as cytochrome c, feericyanide and dichloroindophenol. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P37116|NCPR_VIGRR NADPH--cytochrome P450 reductase OS=Vigna radiata var. radiata PE=1 SV=1 | Back alignment and function description |
|---|
Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/683 (70%), Positives = 562/683 (82%), Gaps = 17/683 (2%)
Query: 41 GVEVASIVLDNKEFVMILTTSIAVLIGCVVVFILRRSSSSKPKKVEPLKPLVV------- 93
GV + V D+ ++I TTS AV++G +V L + SS + K+V KP+VV
Sbjct: 16 GVSLGDSVSDS--LLLIATTSAAVVVGLLV--FLWKKSSDRSKEV---KPVVVPRDLMME 68
Query: 94 KEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY 153
+E EV+V GK KVTIFFGTQTGTAEGFAKALA+E +ARY+KA KVVD+DDYA ++D Y
Sbjct: 69 EEEEVDVAAGKTKVTIFFGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAADDDLY 128
Query: 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE--KEGGEWLQKLKYGVFGLGNRQYE 211
EEKLKKE++VFF LATYGDGEP DNAARFYKWFTE E G WLQKL YGVFGLGNRQYE
Sbjct: 129 EEKLKKESLVFFMLATYGDGEPIDNAARFYKWFTEGKDERGIWLQKLTYGVFGLGNRQYE 188
Query: 212 HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTT 271
HFNKI KVVDE LA QGAKRLV VGLGDDDQ IEDDFSAW+E +W ELD LLRD+DD T
Sbjct: 189 HFNKIGKVVDEELAEQGAKRLVAVGLGDDDQSIEDDFSAWKESLWSELDQLLRDEDDANT 248
Query: 272 VSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSD 331
VSTPYTAAI EYRVV +D AS + ANG+ +D HPCR NVAV+KELH P SD
Sbjct: 249 VSTPYTAAILEYRVVIHDPTAASTYDNHSTVANGNTEFDIHHPCRVNVAVQKELHKPESD 308
Query: 332 RSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTP 391
RSC HLEFDI+GT +TY+TGDHVGVY EN +ETVEE LLG + D +FSLHTDK+DGT
Sbjct: 309 RSCIHLEFDISGTSITYDTGDHVGVYAENCNETVEETGKLLGQNLDLFFSLHTDKDDGTS 368
Query: 392 LGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKD 451
LG S LPP PCSLRTAL +YADLL+ P+K+ALLALA HAS+P++ +RL+ L+SP GKD
Sbjct: 369 LGGSLLPPFPGPCSLRTALARYADLLNPPRKAALLALATHASEPSD-ERLKFLSSPQGKD 427
Query: 452 EYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTC 511
EY++W+V SQRSL+EVM+EFPSAKPPLGVFFAAI PRLQPRYYSISSSPR AP R+HVTC
Sbjct: 428 EYSKWVVGSQRSLVEVMAEFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRFAPQRVHVTC 487
Query: 512 ALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGP 571
ALVY TPTGR+HKG+CSTWMKN++P EKS DCS APIF+R SNFKLP D +PIIM+GP
Sbjct: 488 ALVYGPTPTGRIHKGVCSTWMKNAIPSEKSQDCSSAPIFIRPSNFKLPVDHSIPIIMVGP 547
Query: 572 GTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631
GTGLAPFRGFLQER+AL+E G +LGP+LLFFGCRNR+MD+IYEDEL +FV+ G+LS+LIV
Sbjct: 548 GTGLAPFRGFLQERYALKEDGVQLGPALLFFGCRNRQMDFIYEDELKSFVEQGSLSELIV 607
Query: 632 AFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 691
AFSREG KEYVQHKMM+K++ +W+++S+G YLYVCGDAK MARDVHRTLH+IVQEQ ++
Sbjct: 608 AFSREGAEKEYVQHKMMDKAAHLWSLISQGGYLYVCGDAKGMARDVHRTLHSIVQEQENV 667
Query: 692 DSSKAESMVKNLQMTGRYLRDVW 714
DS+KAE++VK LQM GRYLRDVW
Sbjct: 668 DSTKAEAIVKKLQMDGRYLRDVW 690
|
This enzyme is required for electron transfer from NADP to cytochrome P450. Vigna radiata var. radiata (taxid: 3916) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q9SB48|NCPR1_ARATH NADPH--cytochrome P450 reductase 1 OS=Arabidopsis thaliana GN=ATR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/673 (66%), Positives = 546/673 (81%), Gaps = 10/673 (1%)
Query: 49 LDNKEFVMILTTSIAVLIGCVVVFILRRSSSSKPKKVEPL---KPLVVKEPEVEVD--DG 103
L + ++I TTS+A++ G VV + +++++ + +++PL K L+ K+ + ++D G
Sbjct: 23 LSDDVVLVIATTSLALVAG-FVVLLWKKTTADRSGELKPLMIPKSLMAKDEDDDLDLGSG 81
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIV 163
K +V+IFFGTQTGTAEGFAKAL++E +ARY+KA KV+D+DDYA ++D+YEEKLKKE +
Sbjct: 82 KTRVSIFFGTQTGTAEGFAKALSEEIKARYEKAAVKVIDLDDYAADDDQYEEKLKKETLA 141
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEK-EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 222
FF +ATYGDGEPTDNAARFYKWFTE+ E LQ+L YGVF LGNRQYEHFNKI V+DE
Sbjct: 142 FFCVATYGDGEPTDNAARFYKWFTEENERDIKLQQLAYGVFALGNRQYEHFNKIGIVLDE 201
Query: 223 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISE 282
L +GAKRL+ VGLGDDDQ IEDDF+AW+E +W ELD LL+D+DD +V+TPYTA I E
Sbjct: 202 ELCKKGAKRLIEVGLGDDDQSIEDDFNAWKESLWSELDKLLKDEDD-KSVATPYTAVIPE 260
Query: 283 YRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 342
YRVV +D + ANG+ D HPCR +VAV+KELHT SDRSC HLEFDI+
Sbjct: 261 YRVVTHDPRFTTQKSMESNVANGNTTIDIHHPCRVDVAVQKELHTHESDRSCIHLEFDIS 320
Query: 343 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP 402
TG+TYETGDHVGVY EN E VEEA LLG S D FS+H DKEDG+PL +S +PP FP
Sbjct: 321 RTGITYETGDHVGVYAENHVEIVEEAGKLLGHSLDLVFSIHADKEDGSPL-ESAVPPPFP 379
Query: 403 -PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 461
PC+L T L +YADLL+ P+KSAL+ALAA+A++P+EA++L+HL SP GKDEY+QWIVASQ
Sbjct: 380 GPCTLGTGLARYADLLNPPRKSALVALAAYATEPSEAEKLKHLTSPDGKDEYSQWIVASQ 439
Query: 462 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG 521
RSLLEVM+ FPSAKPPLGVFFAAI PRLQPRYYSISSSPR+APSR+HVT ALVY TPTG
Sbjct: 440 RSLLEVMAAFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRLAPSRVHVTSALVYGPTPTG 499
Query: 522 RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGF 581
R+HKG+CSTWMKN++P EKS++CS APIF+R SNFKLP++ PI+M+GPGTGLAPFRGF
Sbjct: 500 RIHKGVCSTWMKNAVPAEKSHECSGAPIFIRASNFKLPSNPSTPIVMVGPGTGLAPFRGF 559
Query: 582 LQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKE 641
LQER AL+E G ELG SLLFFGCRNR+MD+IYEDELNNFV G +S+LI+AFSREG KE
Sbjct: 560 LQERMALKEDGEELGSSLLFFGCRNRQMDFIYEDELNNFVDQGVISELIMAFSREGAQKE 619
Query: 642 YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVK 701
YVQHKMMEK++ +W+++ E YLYVCGDAK MARDVHRTLHTIVQEQ + SS+AE++VK
Sbjct: 620 YVQHKMMEKAAQVWDLIKEEGYLYVCGDAKGMARDVHRTLHTIVQEQEGVSSSEAEAIVK 679
Query: 702 NLQMTGRYLRDVW 714
LQ GRYLRDVW
Sbjct: 680 KLQTEGRYLRDVW 692
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Reduces a variety of substrates in vitro, such as cytochrome c, feericyanide and dichloroindophenol. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q3SYT8|NCPR_BOVIN NADPH--cytochrome P450 reductase OS=Bos taurus GN=POR PE=2 SV=3 | Back alignment and function description |
|---|
Score = 462 bits (1189), Expect = e-129, Method: Compositional matrix adjust.
Identities = 261/688 (37%), Positives = 398/688 (57%), Gaps = 54/688 (7%)
Query: 53 EFVMILTTSIAVLIGCVV-----VFILRRSSSSKPK--KVEPLKPLVVKEPEVE-VDDGK 104
E V + +T+ +L +V F+ R+ P+ K++ V VE +
Sbjct: 18 EEVSLFSTTDVILFSLIVGVMTYWFLFRKKKEEVPEFTKIQTTTSSVKDRSFVEKMKKTG 77
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARY-------DKAIFKVVDIDDYADEEDEYEEKL 157
+ + +F+G+QTGTAE FA L+ +A RY D + + D+ + E
Sbjct: 78 RNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGMAADPEEYDLADLSSLPEIE------- 129
Query: 158 KKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIA 217
+ + F +ATYG+G+PTDNA FY W E + L +KY VF LGN+ YEHFN +
Sbjct: 130 --KALAIFCMATYGEGDPTDNAQDFYDWLQETDVD--LSGVKYAVFALGNKTYEHFNAMG 185
Query: 218 KVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYT 277
K VD+ L GA+R+ +GLGDDD +E+DF WRE WP + +T
Sbjct: 186 KYVDKRLEQLGAQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHF------GVEATGEE 239
Query: 278 AAISEYRVVFY---DNADASVGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSS 330
++I +Y ++ + D A GE KS+ N +DA++P + V ++L+ +
Sbjct: 240 SSIRQYELMVHTDMDMAKVYTGEMGRLKSYENQK--PPFDAKNPFLAVVTTNRKLNQ-GT 296
Query: 331 DRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGT 390
+R HLE DI+ + + YE+GDHV VY N S V + +LG D SL+ E+
Sbjct: 297 ERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGEILGADLDIIMSLNNLDEE-- 354
Query: 391 PLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG 449
S FP P S RTALT Y D+ + P+ + L LA +AS+PTE ++LR +AS +G
Sbjct: 355 ----SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPTEHEQLRKMASSSG 410
Query: 450 --KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRI 507
K+ Y +W++ ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +
Sbjct: 411 EGKELYLRWVLEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSV 469
Query: 508 HVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPII 567
H+ V +T TGR++KG+ ++W++ P ++ + P++VR+S F+LP A P+I
Sbjct: 470 HICAVAVEYETKTGRINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATTPVI 529
Query: 568 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 627
M+GPGTG+APF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + GAL+
Sbjct: 530 MVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAGFHKDGALT 589
Query: 628 QLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQ 686
QL VAFSRE P K YVQH + + +W ++ E GA++YVCGDA++MARDV T + IV
Sbjct: 590 QLNVAFSREQPQKVYVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYDIVA 649
Query: 687 EQGSLDSSKAESMVKNLQMTGRYLRDVW 714
EQG+++ ++A VK L GRY DVW
Sbjct: 650 EQGAMEHAQAVDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P16435|NCPR_HUMAN NADPH--cytochrome P450 reductase OS=Homo sapiens GN=POR PE=1 SV=2 | Back alignment and function description |
|---|
Score = 462 bits (1189), Expect = e-129, Method: Compositional matrix adjust.
Identities = 263/703 (37%), Positives = 404/703 (57%), Gaps = 50/703 (7%)
Query: 30 VDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGCVVVFILRRSSSSKPKKVEPLK 89
VD S+ S EV+ + + MIL + I L+ +F ++ + K++ L
Sbjct: 6 VDTSSTVSEAVAEEVSLFSMTD----MILFSLIVGLLTYWFLFRKKKEEVPEFTKIQTLT 61
Query: 90 PLVVKEPEVE-VDDGKQKVTIFFGTQTGTAEGFAKALADEARARY-------DKAIFKVV 141
V + VE + + + +F+G+QTGTAE FA L+ +A RY D + +
Sbjct: 62 SSVRESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGMSADPEEYDLA 120
Query: 142 DIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYG 201
D+ + ++ +V F +ATYG+G+PTDNA FY W E + L +K+
Sbjct: 121 DLSSLPEIDNA---------LVVFCMATYGEGDPTDNAQDFYDWLQETDVD--LSGVKFA 169
Query: 202 VFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 261
VFGLGN+ YEHFN + K VD+ L GA+R+ +GLGDDD +E+DF WRE WP +
Sbjct: 170 VFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCE 229
Query: 262 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADAS---VGE----KSWGNANGHAVYDAQHP 314
+T ++I +Y +V + + DA+ +GE KS+ N +DA++P
Sbjct: 230 HF------GVEATGEESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQK--PPFDAKNP 281
Query: 315 CRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGL 374
+ V ++L+ ++R HLE DI+ + + YE+GDHV VY N S V + +LG
Sbjct: 282 FLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGA 340
Query: 375 SPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHAS 433
D SL+ E+ S FP P S RTALT Y D+ + P+ + L LA +AS
Sbjct: 341 DLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYAS 394
Query: 434 DPTEADRLRHLASPAG--KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQP 491
+P+E + LR +AS +G K+ Y W+V ++R +L ++ + PS +PP+ ++PRLQ
Sbjct: 395 EPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPID-HLCELLPRLQA 453
Query: 492 RYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551
RYYSI+SS +V P+ +H+ +V +T GR++KG+ + W++ P ++ + P+FV
Sbjct: 454 RYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPAGENGGRALVPMFV 513
Query: 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 611
R+S F+LP A P+IM+GPGTG+APF GF+QER L++ G E+G +LL++GCR DY
Sbjct: 514 RKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDY 573
Query: 612 IYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK 671
+Y +EL F + GAL+QL VAFSRE K YVQH + + +W ++ GA++YVCGDA+
Sbjct: 574 LYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDAR 633
Query: 672 SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
+MARDV T + IV E G+++ ++A +K L GRY DVW
Sbjct: 634 NMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 676
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P04175|NCPR_PIG NADPH--cytochrome P450 reductase OS=Sus scrofa GN=POR PE=1 SV=2 | Back alignment and function description |
|---|
Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust.
Identities = 268/708 (37%), Positives = 403/708 (56%), Gaps = 60/708 (8%)
Query: 33 SNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGCVV-----VFILRRSSSSKPK--KV 85
SNV + + E+ + E V + + + VL +V FI R+ P+ K+
Sbjct: 4 SNVDTGTTTSEMVA------EEVSLFSATDMVLFSLIVGLLTYWFIFRKKKDEVPEFSKI 57
Query: 86 EPLKPLVVKEPEVE-VDDGKQKVTIFFGTQTGTAEGFAKALADEARARY-------DKAI 137
E V VE + + + +F+G+QTGTAE FA L+ +A RY D
Sbjct: 58 ETTTSSVKDSSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGMAADPEE 116
Query: 138 FKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQK 197
+ + D+ + E+ + F +ATYG+G+PTDNA FY W E + L
Sbjct: 117 YDLSDLSSLPEIENA---------LAVFCMATYGEGDPTDNAQDFYDWLQEADVD--LTG 165
Query: 198 LKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 257
+KY VFGLGN+ YEHFN + K VD+ L GA+R+ +GLGDDD +E+DF WRE WP
Sbjct: 166 VKYAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFDLGLGDDDGNLEEDFITWREQFWP 225
Query: 258 ELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASV---GE----KSWGNANGHAVYD 310
+ +T ++I +Y +V + + D +V GE KS+ N +D
Sbjct: 226 AVCEHF------GVEATGEESSIRQYELVVHTDMDTAVVYTGEMGRLKSYENQK--PPFD 277
Query: 311 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALS 370
A++P + V ++L+ ++R HLE DI+ + + YE+GDHV VY N S V +
Sbjct: 278 AKNPFLAVVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGE 336
Query: 371 LLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALA 429
+LG D SL+ E+ S FP P + RTALT Y D+ + P+ + L LA
Sbjct: 337 ILGTDLDIVMSLNNLDEE------SNKRHPFPCPTTYRTALTYYLDITNPPRTNVLYELA 390
Query: 430 AHASDPTEADRLRHLASPAG--KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVP 487
+AS+P+E ++LR +AS +G K+ Y W+V ++R +L ++ ++PS +PP+ +P
Sbjct: 391 QYASEPSEQEQLRKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPID-HLCERLP 449
Query: 488 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 547
RLQ RYYSI+SS +V P+ +H+ +V +T +GRV+KG+ ++W++ P ++ +
Sbjct: 450 RLQARYYSIASSSKVHPNSVHICAVVVEYETKSGRVNKGVATSWLRAKEPAGENGRRALV 509
Query: 548 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 607
P+FVR+S F+LP A P+IM+GPGTG+APF GF+QER LQE G E+G +LL++GCR
Sbjct: 510 PMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLQEQGKEVGETLLYYGCRRS 569
Query: 608 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYV 666
DY+Y +EL F GAL++L VAFSRE P K YVQH + +W ++ + GA++Y+
Sbjct: 570 DEDYLYREELAQFHAKGALTRLSVAFSREQPQKVYVQHLLKRDKEHLWKLIHDGGAHIYI 629
Query: 667 CGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
CGDA++MARDV T IV EQG ++ ++A VK L GRY DVW
Sbjct: 630 CGDARNMARDVQNTFCDIVAEQGPMEHAQAVDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P00389|NCPR_RABIT NADPH--cytochrome P450 reductase OS=Oryctolagus cuniculus GN=POR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 258/681 (37%), Positives = 392/681 (57%), Gaps = 45/681 (6%)
Query: 54 FVMILTTSIAVLIGCVVV-FILRRSSSSKPK--KVEPLKPLVVKEPEV--EVDDGKQKVT 108
F M ++++G + F+ R+ P+ K++ VKE ++ + +
Sbjct: 23 FSMTDVVLFSLIVGLITYWFLFRKKKEEVPEFTKIQAPTSSSVKESSFVEKMKKTGRNIV 82
Query: 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYE----EKLKKEN--I 162
+F+G+QTGTAE FA L+ +A RY + A + +EY+ L + N +
Sbjct: 83 VFYGSQTGTAEEFANRLSKDAH-RYG--------MRGMAADPEEYDLADLSSLPEINNAL 133
Query: 163 VFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 222
F +ATYG+G+PTDNA FY W E + L +KY VFGLGN+ YEHFN + K VD+
Sbjct: 134 AVFCMATYGEGDPTDNAQDFYDWLQETDVD--LSGVKYAVFGLGNKTYEHFNAMGKYVDQ 191
Query: 223 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISE 282
L GA+R+ +G+GDDD +E+DF WRE WP + +T ++I +
Sbjct: 192 RLEQLGAQRIFELGMGDDDANLEEDFITWREQFWPAVCEHF------GVEATGEESSIRQ 245
Query: 283 YRVVFYDNAD-ASVGEKSWGN----ANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHL 337
Y +V + + D A V + G N +DA++P + V ++L+ ++R HL
Sbjct: 246 YELVLHTDIDVAKVYQGEMGRLKSYENQKPPFDAKNPFLATVTTNRKLNQ-GTERHLMHL 304
Query: 338 EFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 397
E DI+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 305 ELDISDSKIRYESGDHVAVYPANDSALVNQLGEILGADLDVVMSLNNLDEE------SNK 358
Query: 398 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG--KDEYA 454
FP P S RTALT Y D+ + P+ + L LA +A+DP E ++LR +AS +G K+ Y
Sbjct: 359 KHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYAADPAEQEQLRKMASSSGEGKELYL 418
Query: 455 QWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV 514
W+V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ V
Sbjct: 419 SWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAV 477
Query: 515 YEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTG 574
+T GR++KG+ ++W++ P ++ + P+FVR+S F+LP A P+IM+GPGTG
Sbjct: 478 EYETKAGRLNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTG 537
Query: 575 LAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634
+APF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + G LSQL VAFS
Sbjct: 538 VAPFIGFIQERAWLRQQGKEVGETLLYYGCRRAAEDYLYREELAGFQKDGTLSQLNVAFS 597
Query: 635 REGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDS 693
RE K YVQH + +W ++ E GA++YVCGDA++MARDV T + IV E G+++
Sbjct: 598 REQAQKVYVQHLLRRDKEHLWRLIHEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEH 657
Query: 694 SKAESMVKNLQMTGRYLRDVW 714
++A VK L GRY DVW
Sbjct: 658 AQAVDYVKKLMTKGRYSLDVW 678
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Oryctolagus cuniculus (taxid: 9986) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P00388|NCPR_RAT NADPH--cytochrome P450 reductase OS=Rattus norvegicus GN=Por PE=1 SV=3 | Back alignment and function description |
|---|
Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust.
Identities = 261/681 (38%), Positives = 396/681 (58%), Gaps = 40/681 (5%)
Query: 53 EFVMILTTSIAVLIGCVV-----VFILRRSSSSKPK--KVEPLKPLVVKEPEVE-VDDGK 104
E V + +T+ VL +V FI R+ P+ K++ P V + VE +
Sbjct: 18 EEVSLFSTTDMVLFSLIVGVLTYWFIFRKKKEEIPEFSKIQTTAPPVKESSFVEKMKKTG 77
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVF 164
+ + +F+G+QTGTAE FA L+ +A RY D ++Y D D +++V
Sbjct: 78 RNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGMSA-DPEEY-DLADLSSLPEIDKSLVV 134
Query: 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 224
F +ATYG+G+PTDNA FY W E + L +K+ VFGLGN+ YEHFN + K VD+ L
Sbjct: 135 FCMATYGEGDPTDNAQDFYDWLQETDVD--LTGVKFAVFGLGNKTYEHFNAMGKYVDQRL 192
Query: 225 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYR 284
GA+R+ +GLGDDD +E+DF WRE WP + +T ++I +Y
Sbjct: 193 EQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFF------GVEATGEESSIRQYE 246
Query: 285 VVFYDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHL 337
+V +++ D + GE KS+ N +DA++P + V ++L+ ++R HL
Sbjct: 247 LVVHEDMDVAKVYTGEMGRLKSYENQK--PPFDAKNPFLAAVTANRKLNQ-GTERHLMHL 303
Query: 338 EFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 397
E DI+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 304 ELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEE------SNK 357
Query: 398 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG--KDEYA 454
FP P + RTALT Y D+ + P+ + L LA +AS+P+E + L +AS +G K+ Y
Sbjct: 358 KHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYL 417
Query: 455 QWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV 514
W+V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ V
Sbjct: 418 SWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAV 476
Query: 515 YEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTG 574
+ +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP + P+IM+GPGTG
Sbjct: 477 EYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTG 536
Query: 575 LAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634
+APF GF+QER L+E G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFS
Sbjct: 537 IAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFS 596
Query: 635 REGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDS 693
RE K YVQH + +W ++ E GA++YVCGDA++MA+DV T + IV E G ++
Sbjct: 597 REQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEH 656
Query: 694 SKAESMVKNLQMTGRYLRDVW 714
++A VK L GRY DVW
Sbjct: 657 TQAVDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P37040|NCPR_MOUSE NADPH--cytochrome P450 reductase OS=Mus musculus GN=Por PE=1 SV=2 | Back alignment and function description |
|---|
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 260/681 (38%), Positives = 395/681 (58%), Gaps = 40/681 (5%)
Query: 53 EFVMILTTSIAVLIGCVV-----VFILRRSSSSKPK--KVEPLKPLVVKEPEVE-VDDGK 104
E V + +T+ VL +V FI ++ P+ K++ P V + VE +
Sbjct: 18 EEVSLFSTTDIVLFSLIVGVLTYWFIFKKKKEEIPEFSKIQTTAPPVKESSFVEKMKKTG 77
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVF 164
+ + +F+G+QTGTAE FA L+ +A RY D ++Y D D +++V
Sbjct: 78 RNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGMSA-DPEEY-DLADLSSLPEIDKSLVV 134
Query: 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 224
F +ATYG+G+PTDNA FY W E + L +K+ VFGLGN+ YEHFN + K VD+ L
Sbjct: 135 FCMATYGEGDPTDNAQDFYDWLQETDVD--LTGVKFAVFGLGNKTYEHFNAMGKYVDQRL 192
Query: 225 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYR 284
GA+R+ +GLGDDD +E+DF WRE WP + +T ++I +Y
Sbjct: 193 EQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFF------GVEATGEESSIRQYE 246
Query: 285 VVFYDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHL 337
+V +++ D + GE KS+ N +DA++P + V ++L+ ++R HL
Sbjct: 247 LVVHEDMDTAKVYTGEMGRLKSYENQK--PPFDAKNPFLAAVTTNRKLNQ-GTERHLMHL 303
Query: 338 EFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 397
E DI+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 304 ELDISDSKIRYESGDHVAVYPANDSTLVNQIGEILGADLDVIMSLNNLDEE------SNK 357
Query: 398 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG--KDEYA 454
FP P + RTALT Y D+ + P+ + L LA +AS+P+E + L +AS +G K+ Y
Sbjct: 358 KHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYL 417
Query: 455 QWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV 514
W+V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ V
Sbjct: 418 SWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAV 476
Query: 515 YEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTG 574
+ +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP P+IM+GPGTG
Sbjct: 477 EYEAKSGRVNKGVATSWLRTKEPAGENGRRALVPMFVRKSQFRLPFKPTTPVIMVGPGTG 536
Query: 575 LAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634
+APF GF+QER L+E G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFS
Sbjct: 537 VAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFS 596
Query: 635 REGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDS 693
RE K YVQH + +W ++ E GA++YVCGDA++MA+DV T + IV E G ++
Sbjct: 597 REQAHKVYVQHLLKRDKEHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEH 656
Query: 694 SKAESMVKNLQMTGRYLRDVW 714
++A VK L GRY DVW
Sbjct: 657 TQAVDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 714 | ||||||
| 224551852 | 710 | NADPH:cytochrome P450 reductase [Gossypi | 0.974 | 0.980 | 0.820 | 0.0 | |
| 359485011 | 705 | PREDICTED: NADPH--cytochrome P450 reduct | 0.984 | 0.997 | 0.816 | 0.0 | |
| 449461207 | 708 | PREDICTED: NADPH--cytochrome P450 reduct | 0.985 | 0.994 | 0.810 | 0.0 | |
| 449522700 | 708 | PREDICTED: NADPH--cytochrome P450 reduct | 0.985 | 0.994 | 0.809 | 0.0 | |
| 449457161 | 708 | PREDICTED: NADPH--cytochrome P450 reduct | 0.987 | 0.995 | 0.793 | 0.0 | |
| 197209812 | 706 | cytochrome P450 reductase [Lotus japonic | 0.980 | 0.991 | 0.790 | 0.0 | |
| 255587986 | 694 | cytochrome P450, putative [Ricinus commu | 0.964 | 0.992 | 0.811 | 0.0 | |
| 13183566 | 712 | NADPH-cytochrome P450 oxydoreductase iso | 0.981 | 0.984 | 0.800 | 0.0 | |
| 297735398 | 660 | unnamed protein product [Vitis vinifera] | 0.922 | 0.998 | 0.833 | 0.0 | |
| 6503253 | 704 | putative NADPH-cytochrome P450 reductase | 0.980 | 0.994 | 0.781 | 0.0 |
| >gi|224551852|gb|ACN54324.1| NADPH:cytochrome P450 reductase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/701 (82%), Positives = 647/701 (92%), Gaps = 5/701 (0%)
Query: 16 SPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGCVVVFILR 75
SP DLMSA+++ K+DPSN +SS S +V +++ +N+EFVMILTTSIAVLIGCVV+ I R
Sbjct: 13 SPLDLMSALVKA-KMDPSN-ASSDSAAQVTTVLFENREFVMILTTSIAVLIGCVVILIWR 70
Query: 76 RSSSSKPKKVE-PLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYD 134
RS+S KPK+++ PLKP ++KEPE+EVDDGK+KVTI FGTQTGTAEGFAKAL +EA+ARY+
Sbjct: 71 RSASQKPKQIQLPLKPSIIKEPELEVDDGKKKVTILFGTQTGTAEGFAKALVEEAKARYE 130
Query: 135 KAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE-KEGGE 193
KA F +VD+DDYA +++EYEEK+KK+N+ FFFLATYGDGEPTDNAARFYKWFTE KE GE
Sbjct: 131 KATFNIVDLDDYAADDEEYEEKMKKDNLAFFFLATYGDGEPTDNAARFYKWFTEGKERGE 190
Query: 194 WLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRE 253
WLQ +KYG+FGLGN+QYEHFNK+AKVVDE+L QGAKR+VP+GLGDDDQCIEDDF+AWRE
Sbjct: 191 WLQNMKYGIFGLGNKQYEHFNKVAKVVDELLTEQGAKRIVPLGLGDDDQCIEDDFTAWRE 250
Query: 254 LVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQH 313
LVWPELD LLRD+DD TVSTPYTAA+ EYRVVFYD ADA + +K+W NANGHA YDAQH
Sbjct: 251 LVWPELDQLLRDEDD-ATVSTPYTAAVLEYRVVFYDPADAPLEDKNWSNANGHATYDAQH 309
Query: 314 PCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLG 373
PCRSNVAVRKELH P SDRSCTHLEFDIAGTGL+YETGDHVGVYCENL E V+EALSLLG
Sbjct: 310 PCRSNVAVRKELHAPESDRSCTHLEFDIAGTGLSYETGDHVGVYCENLDEVVDEALSLLG 369
Query: 374 LSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHAS 433
LSPDTYFS+HTDKEDGTPLG S+LP +FPPC+LRTAL +YADLLSSPKK+ALLALAAHAS
Sbjct: 370 LSPDTYFSVHTDKEDGTPLGGSSLPSSFPPCTLRTALARYADLLSSPKKAALLALAAHAS 429
Query: 434 DPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 493
DPTEADRLRHLASPAGKDEYAQWIVA+QRSLLEVM+EFPSAKPPLGVFFAA+ PRLQPRY
Sbjct: 430 DPTEADRLRHLASPAGKDEYAQWIVANQRSLLEVMAEFPSAKPPLGVFFAAVAPRLQPRY 489
Query: 494 YSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 553
YSISSSPR+APSRIHVTCALVYEKTPTGR+HKG+CSTWMKN++ KS+DC WAPIFVRQ
Sbjct: 490 YSISSSPRLAPSRIHVTCALVYEKTPTGRIHKGVCSTWMKNAVSSGKSDDCGWAPIFVRQ 549
Query: 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 613
SNFKLP+D KVPIIMIGPGTGLAPFRGFLQER AL+EAGAELGPS+LFFGCRNRKMD+IY
Sbjct: 550 SNFKLPSDTKVPIIMIGPGTGLAPFRGFLQERLALKEAGAELGPSVLFFGCRNRKMDFIY 609
Query: 614 EDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSM 673
EDELNNFV SGALS+L+VAFSREGPTKEYVQHKMMEK+ DIW+M+S+G YLYVCGDAK M
Sbjct: 610 EDELNNFVNSGALSELVVAFSREGPTKEYVQHKMMEKAKDIWDMISQGGYLYVCGDAKGM 669
Query: 674 ARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
ARDVHR LHTI QEQGSLDSSKAESMVKNLQM+GRYLRDVW
Sbjct: 670 ARDVHRALHTIFQEQGSLDSSKAESMVKNLQMSGRYLRDVW 710
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485011|ref|XP_002270732.2| PREDICTED: NADPH--cytochrome P450 reductase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1194 bits (3089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/707 (81%), Positives = 648/707 (91%), Gaps = 4/707 (0%)
Query: 9 ESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGC 68
+S ++KVSPFDLMSAII+G +D SNVSS G A++VL+N+EF+MILTTSIAVLIGC
Sbjct: 2 QSSSVKVSPFDLMSAIIKG-SMDQSNVSSESGGA--AAMVLENREFIMILTTSIAVLIGC 58
Query: 69 VVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADE 128
VVV I RRS + K EP KPL+VK+ EVEVDDGKQKVTIFFGTQTGTAEGFAKALA+E
Sbjct: 59 VVVLIWRRSGQKQSKTPEPPKPLIVKDLEVEVDDGKQKVTIFFGTQTGTAEGFAKALAEE 118
Query: 129 ARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188
A+ARY+KAIFKVVD+DDYA ++DEYEEKLKKE + FFFLATYGDGEPTDNAARFYKWF E
Sbjct: 119 AKARYEKAIFKVVDLDDYAGDDDEYEEKLKKETLAFFFLATYGDGEPTDNAARFYKWFAE 178
Query: 189 -KEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD 247
KE GEWLQ LKYGVFGLGNRQYEHFNK+AKVVD+I+ QG KR+VPVGLGDDDQCIEDD
Sbjct: 179 GKERGEWLQNLKYGVFGLGNRQYEHFNKVAKVVDDIITEQGGKRIVPVGLGDDDQCIEDD 238
Query: 248 FSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHA 307
F+AWREL+WPELD LLRD+DD TTVSTPYTAA+ EYRVVF+D AS+ +KSWG+ANGH
Sbjct: 239 FAAWRELLWPELDQLLRDEDDATTVSTPYTAAVLEYRVVFHDPEGASLQDKSWGSANGHT 298
Query: 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEE 367
V+DAQHPCR+NVAVRKELHTP+SDRSCTHLEFDI+GTGLTYETGDHVGVYCENL ETVEE
Sbjct: 299 VHDAQHPCRANVAVRKELHTPASDRSCTHLEFDISGTGLTYETGDHVGVYCENLPETVEE 358
Query: 368 ALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLA 427
A LLG SPD YFS+HT++EDGTPL S+L P FPPC+LRTALT+YAD+LSSPKKSAL+A
Sbjct: 359 AERLLGFSPDVYFSIHTEREDGTPLSGSSLSPPFPPCTLRTALTRYADVLSSPKKSALVA 418
Query: 428 LAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVP 487
LAAHASDP+EADRL++LASP+GKDEYAQW+VASQRSLLE+M+EFPSAKPPLGVFFAA+ P
Sbjct: 419 LAAHASDPSEADRLKYLASPSGKDEYAQWVVASQRSLLEIMAEFPSAKPPLGVFFAAVAP 478
Query: 488 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 547
RLQPRYYSISSSP++ PSRIHVTCALV +K PTGR+HKG+CSTWMK ++P+E+S DCSWA
Sbjct: 479 RLQPRYYSISSSPKMVPSRIHVTCALVCDKMPTGRIHKGICSTWMKYAVPLEESQDCSWA 538
Query: 548 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 607
PIFVRQSNFKLPAD VPIIMIGPGTGLAPFRGFLQERFAL+EAGAELG S+LFFGCRNR
Sbjct: 539 PIFVRQSNFKLPADTSVPIIMIGPGTGLAPFRGFLQERFALKEAGAELGSSILFFGCRNR 598
Query: 608 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVC 667
KMDYIYEDELN FV+SGALS+LIVAFSREGPTKEYVQHKMMEK+SDIWN++S+G Y+YVC
Sbjct: 599 KMDYIYEDELNGFVESGALSELIVAFSREGPTKEYVQHKMMEKASDIWNVISQGGYIYVC 658
Query: 668 GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
GDAK MARDVHRTLHTI+QEQGSLDSSKAESMVKNLQMTGRYLRDVW
Sbjct: 659 GDAKGMARDVHRTLHTILQEQGSLDSSKAESMVKNLQMTGRYLRDVW 705
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461207|ref|XP_004148333.1| PREDICTED: NADPH--cytochrome P450 reductase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1178 bits (3048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/707 (81%), Positives = 642/707 (90%), Gaps = 3/707 (0%)
Query: 9 ESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGC 68
ES +MKVSP +LMSAIIR +DPS SS S EVA+++LDN+EFVMILTTSIAVLIGC
Sbjct: 4 ESRSMKVSPLELMSAIIRKA-MDPSQ-DSSESVREVATLILDNREFVMILTTSIAVLIGC 61
Query: 69 VVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADE 128
VVVF+ +RSS K K EP K L+VKEPE EVDDGK+KVT+FFGTQTGTAEGFAKALA+E
Sbjct: 62 VVVFVWKRSSGQKAKPFEPPKQLIVKEPEPEVDDGKKKVTVFFGTQTGTAEGFAKALAEE 121
Query: 129 ARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188
A+ARYDKA F+VVD+DDYA ++DEYEEKLKKE + FFLATYGDGEPTDNAARFYKWF+E
Sbjct: 122 AKARYDKATFRVVDLDDYAADDDEYEEKLKKETLAIFFLATYGDGEPTDNAARFYKWFSE 181
Query: 189 -KEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD 247
KE GEW+ L+Y VFGLGNRQYEHFNKIAKVVDE LA QG KRLVPVGLGDDDQCIEDD
Sbjct: 182 GKEKGEWISNLQYAVFGLGNRQYEHFNKIAKVVDEQLAEQGGKRLVPVGLGDDDQCIEDD 241
Query: 248 FSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHA 307
FS WRE +WPELD LLRD+DD T+VSTPYTAA+ EYRVVFYD AD S G+K W ANGHA
Sbjct: 242 FSVWREQLWPELDKLLRDEDDSTSVSTPYTAAVLEYRVVFYDAADVSGGDKRWAFANGHA 301
Query: 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEE 367
VYDAQHPCR+NVAVRKELHT +SDRSC HLEFDI+GTGLTYETGDHVGV+CENL E VEE
Sbjct: 302 VYDAQHPCRANVAVRKELHTSASDRSCIHLEFDISGTGLTYETGDHVGVFCENLDEVVEE 361
Query: 368 ALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLA 427
A+ L+G+SP+TYFS+HTDKEDGTPL S+LPP F PC+LRTALT+YADLLSSPKKSAL+A
Sbjct: 362 AIRLIGMSPETYFSIHTDKEDGTPLSGSSLPPPFAPCTLRTALTQYADLLSSPKKSALVA 421
Query: 428 LAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVP 487
LAAHASDP EADRLRHL+SPAGKDEY+QWIVASQRSLLEVM EFPSA+PPLGVFFAA+ P
Sbjct: 422 LAAHASDPAEADRLRHLSSPAGKDEYSQWIVASQRSLLEVMVEFPSARPPLGVFFAAVAP 481
Query: 488 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 547
RLQPRYYSISSSPR+APSRIHVTCALVY+KTPTGR+HKG+CSTWMKN++ +E+S CSWA
Sbjct: 482 RLQPRYYSISSSPRMAPSRIHVTCALVYDKTPTGRIHKGVCSTWMKNAISLEESQACSWA 541
Query: 548 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 607
PI+VRQSNFKLP D+K+PIIMIGPGTGLAPFRGFLQER AL+E+G ELG S+LFFGCRNR
Sbjct: 542 PIYVRQSNFKLPTDSKLPIIMIGPGTGLAPFRGFLQERLALKESGVELGHSILFFGCRNR 601
Query: 608 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVC 667
KMDYIYEDELNNFV++GALS+LI+AFSREGP+KEYVQHKM+EK+SDIWN+LS+GAY+YVC
Sbjct: 602 KMDYIYEDELNNFVETGALSELILAFSREGPSKEYVQHKMVEKASDIWNLLSQGAYIYVC 661
Query: 668 GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
GDAK MARDVHRTLH IVQEQGSLDSSKAESMVKNLQM+GRYLRDVW
Sbjct: 662 GDAKGMARDVHRTLHNIVQEQGSLDSSKAESMVKNLQMSGRYLRDVW 708
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522700|ref|XP_004168364.1| PREDICTED: NADPH--cytochrome P450 reductase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1177 bits (3046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/707 (80%), Positives = 642/707 (90%), Gaps = 3/707 (0%)
Query: 9 ESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGC 68
ES +MKVSP +LMSAIIR +DPS SS S EVA+++LDN+EFVMILTTSIAVLIGC
Sbjct: 4 ESRSMKVSPLELMSAIIRKA-MDPSQ-DSSESVREVATLILDNREFVMILTTSIAVLIGC 61
Query: 69 VVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADE 128
VVVF+ +RSS K K EP K L+VKEPE EVDDGK+KVT+FFGTQTGTAEGFAKALA+E
Sbjct: 62 VVVFVWKRSSGQKAKPFEPPKQLIVKEPEPEVDDGKKKVTVFFGTQTGTAEGFAKALAEE 121
Query: 129 ARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188
A+ARYDKA F+VVD+DDYA ++DEYEEKLKKE + FFLATYGDGEPTDNAARFYKWF+E
Sbjct: 122 AKARYDKATFRVVDLDDYAADDDEYEEKLKKETLAIFFLATYGDGEPTDNAARFYKWFSE 181
Query: 189 -KEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD 247
KE GEW+ L+Y VFGLGNRQYEHFNKIAKVVDE LA QG KRLVPVGLGDDDQCIEDD
Sbjct: 182 GKEKGEWISNLQYAVFGLGNRQYEHFNKIAKVVDEQLAEQGGKRLVPVGLGDDDQCIEDD 241
Query: 248 FSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHA 307
FS WRE +WPELD LLRD+DD T+VSTPYTAA+ EYRVVFYD AD S G+K W ANGHA
Sbjct: 242 FSVWREQLWPELDKLLRDEDDSTSVSTPYTAAVLEYRVVFYDAADVSGGDKRWAFANGHA 301
Query: 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEE 367
VYDAQHPCR+NVAVRKELHT +SDRSC HLEFDI+GTGLTYETGDHVGV+CENL E VEE
Sbjct: 302 VYDAQHPCRANVAVRKELHTSASDRSCIHLEFDISGTGLTYETGDHVGVFCENLDEVVEE 361
Query: 368 ALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLA 427
A+ L+G+SP+TYFS+HTDKEDGTPL S+LPP F PC+LRTALT+YADLLSSPKKSAL+A
Sbjct: 362 AIRLIGMSPETYFSIHTDKEDGTPLSGSSLPPPFAPCTLRTALTQYADLLSSPKKSALVA 421
Query: 428 LAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVP 487
LAAHASDP EADRLRHL+SPAGKDEY+QWIVASQRSLLEVM EFPSA+PPLGVFFAA+ P
Sbjct: 422 LAAHASDPAEADRLRHLSSPAGKDEYSQWIVASQRSLLEVMVEFPSARPPLGVFFAAVAP 481
Query: 488 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 547
RLQPRYYSISSSPR+APSRIHVTCALVY+KTPTGR+HKG+CSTWMKN++ +E+S CSWA
Sbjct: 482 RLQPRYYSISSSPRMAPSRIHVTCALVYDKTPTGRIHKGVCSTWMKNAISLEESQACSWA 541
Query: 548 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 607
PI+VRQSNFKLP D+K+PIIMIGPGTGLAPFRGFLQER A++E+G ELG S+LFFGCRNR
Sbjct: 542 PIYVRQSNFKLPTDSKLPIIMIGPGTGLAPFRGFLQERLAMKESGVELGHSILFFGCRNR 601
Query: 608 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVC 667
KMDYIYEDELNNFV++GALS+LI+AFSREGP+KEYVQHKM+EK+SDIWN+LS+GAY+YVC
Sbjct: 602 KMDYIYEDELNNFVETGALSELILAFSREGPSKEYVQHKMVEKASDIWNLLSQGAYIYVC 661
Query: 668 GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
GDAK MARDVHRTLH IVQEQGSLDSSKAESMVKNLQM+GRYLRDVW
Sbjct: 662 GDAKGMARDVHRTLHNIVQEQGSLDSSKAESMVKNLQMSGRYLRDVW 708
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457161|ref|XP_004146317.1| PREDICTED: NADPH--cytochrome P450 reductase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1176 bits (3043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/708 (79%), Positives = 638/708 (90%), Gaps = 3/708 (0%)
Query: 8 SESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIG 67
SES +MK SPFD MSAII+G ++DPSN S +G E AS++ +N+E V ILTTSIAV+IG
Sbjct: 3 SESSSMKASPFDFMSAIIKG-RMDPSNSSFQSTG-EGASVIFENRELVAILTTSIAVMIG 60
Query: 68 CVVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALAD 127
C VV + RRS + K K +E KPL+ KEPE EVDDGK+KVTIFFGTQTGTAEGFAKAL+D
Sbjct: 61 CFVVLVWRRSGNRKVKTIELPKPLLGKEPEPEVDDGKKKVTIFFGTQTGTAEGFAKALSD 120
Query: 128 EARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187
EA+ARYDKA F+VVD+DDY +EDEYE+KLKKE++ FFLATYGDGEPTDNAARFYKWFT
Sbjct: 121 EAKARYDKAKFRVVDLDDYGADEDEYEQKLKKESVAVFFLATYGDGEPTDNAARFYKWFT 180
Query: 188 E-KEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIED 246
E KE GE LQ L Y VFGLGNRQYEHFNKIAKVVDE+L QG KRLV VGLGDDDQCIED
Sbjct: 181 EGKERGECLQNLNYAVFGLGNRQYEHFNKIAKVVDELLETQGGKRLVKVGLGDDDQCIED 240
Query: 247 DFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGH 306
DFSAWRE +WPELD LLRD+DD TV+TPYTAAISEYRVVF+D +D + +K+W NANGH
Sbjct: 241 DFSAWRESLWPELDQLLRDEDDAATVTTPYTAAISEYRVVFHDPSDVTDDKKNWMNANGH 300
Query: 307 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVE 366
AV+DAQHP RSNV VRKELHTP+SDRSCTHLEFDI+ + L YETGDHVGVYCENL+ETV+
Sbjct: 301 AVHDAQHPFRSNVVVRKELHTPASDRSCTHLEFDISESALKYETGDHVGVYCENLTETVD 360
Query: 367 EALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALL 426
EAL+LLGLSP+TYFS+HTD EDGT LG S+LPP FP C+LRTALT+YADLL+SPKKSALL
Sbjct: 361 EALNLLGLSPETYFSIHTDNEDGTQLGGSSLPPPFPSCTLRTALTRYADLLNSPKKSALL 420
Query: 427 ALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIV 486
ALAAHAS+P EADRLR+LASPAGKDEY+Q +V SQ+SLLEVM+EFPSAKPPLGVFFAA+
Sbjct: 421 ALAAHASNPIEADRLRYLASPAGKDEYSQSVVGSQKSLLEVMAEFPSAKPPLGVFFAAVA 480
Query: 487 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 546
PRLQPR+YSISSSPR+APSRIHVTCALVY+K PTGR+HKG+CSTWMKNS+PMEK ++CSW
Sbjct: 481 PRLQPRFYSISSSPRMAPSRIHVTCALVYDKMPTGRIHKGICSTWMKNSVPMEKIHECSW 540
Query: 547 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 606
APIFVRQSNFKLP+D+KVPIIM+GPGTGLAPFRGFLQER AL+E+G ELGPS+LFFGCRN
Sbjct: 541 APIFVRQSNFKLPSDSKVPIIMVGPGTGLAPFRGFLQERLALKESGVELGPSILFFGCRN 600
Query: 607 RKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYV 666
R MDYIYEDELNNFV++GALS+L++AFSREGPTKEYVQHKM EK+SDIWN++S+GAYLYV
Sbjct: 601 RAMDYIYEDELNNFVETGALSELVIAFSREGPTKEYVQHKMTEKASDIWNLISQGAYLYV 660
Query: 667 CGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
CGDAK MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ +GRYLRDVW
Sbjct: 661 CGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQTSGRYLRDVW 708
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|197209812|dbj|BAG68945.1| cytochrome P450 reductase [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 1162 bits (3007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/710 (79%), Positives = 633/710 (89%), Gaps = 10/710 (1%)
Query: 9 ESGTMKVSPFDLMSAIIRGGKVDPSNVSS-SGSGVEVASIVLDNKEFVMILTTSIAVLIG 67
ES +MK+SP DLMSA+I+G +DPSNVSS SG+G S+ L+N+EFVM+LTTSIAVLIG
Sbjct: 3 ESSSMKISPLDLMSAMIKG-TLDPSNVSSTSGAG----SVFLENREFVMVLTTSIAVLIG 57
Query: 68 CVVVFILRRSSSSKPKKVEPLKPLVVK-EPEVEVDDGKQKVTIFFGTQTGTAEGFAKALA 126
CVVVFI RRS+ +K K +EP K +V K E EVDDG +KVTIFFGTQTGTAEGFAKA+A
Sbjct: 58 CVVVFIWRRSTGNKAKSIEPPKRVVEKLSDEAEVDDGTRKVTIFFGTQTGTAEGFAKAIA 117
Query: 127 DEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186
+EA+ RY+KA FK+VD+DDYA ++DEYEEKLKKE + FFLATYGDGEPTDNAARFYKWF
Sbjct: 118 EEAKVRYEKAKFKIVDMDDYAQDDDEYEEKLKKETLALFFLATYGDGEPTDNAARFYKWF 177
Query: 187 TEKEGGE--WLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCI 244
E + E WL+ L+Y VFGLGNRQYEHFNK+A VD+ LA+ G KRLV VGLGDDDQCI
Sbjct: 178 LEGDEKEEGWLRNLEYAVFGLGNRQYEHFNKVAIEVDDKLADFGGKRLVKVGLGDDDQCI 237
Query: 245 EDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNAN 304
EDDF+AW+E +WP LD LLR DDD TTVSTPYTAA+ EYRVV +D DASV EK W N N
Sbjct: 238 EDDFTAWKEELWPALDELLRGDDD-TTVSTPYTAAVLEYRVVIHDPLDASVDEKKWHNVN 296
Query: 305 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSET 364
GHA+ DAQHP RSNVAVRKELHTP SDRSCTHLEFDI+GTG+ YETGDHVGVYCENLSET
Sbjct: 297 GHAIVDAQHPVRSNVAVRKELHTPVSDRSCTHLEFDISGTGVAYETGDHVGVYCENLSET 356
Query: 365 VEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSA 424
VEEA+ LLGLSPDTYFS+HTD EDG PL S+LPPTFPPC+LRTA+ +YAD+LSSPKKS
Sbjct: 357 VEEAVRLLGLSPDTYFSVHTDDEDGKPLSGSSLPPTFPPCTLRTAIARYADVLSSPKKSV 416
Query: 425 LLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAA 484
LLALAAHAS+P+EADRLRHLASPAGKDEY++W++ASQRSLLEVM+EFPSAKPP+GVFFAA
Sbjct: 417 LLALAAHASNPSEADRLRHLASPAGKDEYSEWVIASQRSLLEVMAEFPSAKPPIGVFFAA 476
Query: 485 IVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 544
I PRLQPR+YSISSSPR+APSRIHVTCALV +K PTGR+H+G+CSTWMKNS+P+EKS DC
Sbjct: 477 IAPRLQPRFYSISSSPRMAPSRIHVTCALVNDKMPTGRIHRGVCSTWMKNSVPLEKSQDC 536
Query: 545 SWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGC 604
SWAPIFVRQSNFKLPAD KVPIIMIGPGTGLAPFRGFLQER AL+E GAELGPS+LFFGC
Sbjct: 537 SWAPIFVRQSNFKLPADNKVPIIMIGPGTGLAPFRGFLQERLALKEDGAELGPSVLFFGC 596
Query: 605 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYL 664
RNR+MDYIYEDELN+FV SGALS+LIVAFSREGPTKEYVQHKMMEK+SDIWNM+S+GAY+
Sbjct: 597 RNRQMDYIYEDELNHFVNSGALSELIVAFSREGPTKEYVQHKMMEKASDIWNMISQGAYI 656
Query: 665 YVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
YVCGDAK MARDVHRTLHTI+QEQGSLDSSKAE MVKNLQ+ GRYLRDVW
Sbjct: 657 YVCGDAKGMARDVHRTLHTILQEQGSLDSSKAEGMVKNLQLNGRYLRDVW 706
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587986|ref|XP_002534464.1| cytochrome P450, putative [Ricinus communis] gi|223525245|gb|EEF27920.1| cytochrome P450, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1150 bits (2974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/694 (81%), Positives = 629/694 (90%), Gaps = 5/694 (0%)
Query: 1 MQSSSSSSESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTT 60
MQ SSSS+ S MKVSPFDL+SA+I+G +DPSNVSS S VEVA+++ +N+EFVMILTT
Sbjct: 1 MQPSSSSAGS-IMKVSPFDLISAVIKG-NLDPSNVSSESSAVEVATMLYENREFVMILTT 58
Query: 61 SIAVLIGCVVVFILRRSSSSKPKKV--EPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTA 118
SIAVLIGCVVV + RRS S K K V EPLKPLVVKEPE E DDG+++VTIFFGTQTGTA
Sbjct: 59 SIAVLIGCVVVLVWRRSGSQKSKSVAIEPLKPLVVKEPEPEPDDGQKRVTIFFGTQTGTA 118
Query: 119 EGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDN 178
EGFAKAL++EA+ARY+KA FKVVD+DDYA ++DEYE KLKKE++ FF+ATYGDGEPTDN
Sbjct: 119 EGFAKALSEEAKARYEKATFKVVDLDDYAADDDEYETKLKKESLALFFVATYGDGEPTDN 178
Query: 179 AARFYKWFTE-KEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 237
AARFYKWFTE KE GEWLQ LK+GVFGLGN+QYEHFNKIAKV+DE+L QGAKRLVPVGL
Sbjct: 179 AARFYKWFTEGKERGEWLQDLKFGVFGLGNKQYEHFNKIAKVLDELLEEQGAKRLVPVGL 238
Query: 238 GDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGE 297
GDDDQCIEDDF+AW+E +WPELD +LR +DD TVSTPYTAA+ EYR+VFYD DA + +
Sbjct: 239 GDDDQCIEDDFTAWKESLWPELDQVLRGEDDAATVSTPYTAAVLEYRIVFYDPEDAPIED 298
Query: 298 KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVY 357
K W N NGHAVYDAQHPCR+NVAVRKELHTP+SDRSCTHLEFDIAGTGL+YETGDHVGVY
Sbjct: 299 KRWSNTNGHAVYDAQHPCRANVAVRKELHTPASDRSCTHLEFDIAGTGLSYETGDHVGVY 358
Query: 358 CENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLL 417
CENL ETVEEAL LLGLSPDTYFS+H DKEDGT L S+LP FPPC+LRTALT+YADLL
Sbjct: 359 CENLDETVEEALQLLGLSPDTYFSIHADKEDGTALSGSSLPAPFPPCTLRTALTRYADLL 418
Query: 418 SSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 477
SSPKKSALLALAAHA+DPTEADRLRHLASPAGKDEY QWIVA+QRSLLEVM+EFPSAKPP
Sbjct: 419 SSPKKSALLALAAHATDPTEADRLRHLASPAGKDEYTQWIVAAQRSLLEVMAEFPSAKPP 478
Query: 478 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP 537
LGVFFA++ PRLQPR+YSISSSPR+APSRIHVTCALV +KTPTGRVHKG+CSTWMKNS+P
Sbjct: 479 LGVFFASVAPRLQPRFYSISSSPRMAPSRIHVTCALVLDKTPTGRVHKGVCSTWMKNSVP 538
Query: 538 MEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGP 597
MEKS++CSWAPIFVRQSNFKLPAD KVPIIMIGPGTGLAPFRGFLQER AL+EAG ELGP
Sbjct: 539 MEKSHECSWAPIFVRQSNFKLPADTKVPIIMIGPGTGLAPFRGFLQERLALKEAGVELGP 598
Query: 598 SLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNM 657
S+LFFGCRN KMDYIYEDELNN+V+S ALS+LIVAFSREGPTK+YVQHKM EK+ DIWNM
Sbjct: 599 SVLFFGCRNSKMDYIYEDELNNYVESDALSELIVAFSREGPTKQYVQHKMSEKALDIWNM 658
Query: 658 LSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 691
+S+G Y+YVCGDAK MARDVHRTLHTIVQEQ S
Sbjct: 659 ISQGGYIYVCGDAKGMARDVHRTLHTIVQEQVSF 692
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13183566|gb|AAK15261.1|AF302498_1 NADPH-cytochrome P450 oxydoreductase isoform 3 [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 1148 bits (2970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/706 (80%), Positives = 634/706 (89%), Gaps = 5/706 (0%)
Query: 13 MKVSPFDLMSAIIRGGKVDPSNVSS--SGSGVEVASIVLDNKEFVMILTTSIAVLIGCVV 70
+KVSP DLM AII+G KVDP+NVSS GS EVA+++L+N+EFVMILTTSIAVLIGCVV
Sbjct: 8 IKVSPLDLMQAIIKG-KVDPANVSSESGGSVAEVATLILENREFVMILTTSIAVLIGCVV 66
Query: 71 VFILRRSSS-SKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEA 129
V I RRSS +PK P KPL+VK+ E EVDDGK+KVTIFFGTQTGTAEGFAKALA+EA
Sbjct: 67 VLIWRRSSGYQRPKVPVPPKPLIVKDLEPEVDDGKKKVTIFFGTQTGTAEGFAKALAEEA 126
Query: 130 RARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE- 188
+ARYDKA FK VD+DDYA ++DEYEEKLKKE++V FFLATYGDGEPTDNAARFYKWFTE
Sbjct: 127 KARYDKATFKTVDMDDYAGDDDEYEEKLKKEDLVIFFLATYGDGEPTDNAARFYKWFTEG 186
Query: 189 KEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDF 248
E GEWL+ L Y VFGLGNRQYEHFNKIA VVD+I A+QG KRL PVGLGDDDQC+EDDF
Sbjct: 187 NERGEWLKDLPYAVFGLGNRQYEHFNKIAIVVDKIFADQGGKRLAPVGLGDDDQCMEDDF 246
Query: 249 SAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAV 308
+AWREL+WPE+D LL D DDPT VSTPY A +SEYRVVF+ DA + + +W NANGHAV
Sbjct: 247 AAWRELLWPEMDQLLLDGDDPTAVSTPYAATVSEYRVVFHSPEDAPLEDDNWSNANGHAV 306
Query: 309 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 368
YDAQHPCR+NVAVR+ELHTP+SDRSCTHLEF+I+GTGL Y TGDHVGVYCENLSETVEEA
Sbjct: 307 YDAQHPCRANVAVRRELHTPASDRSCTHLEFEISGTGLAYGTGDHVGVYCENLSETVEEA 366
Query: 369 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLAL 428
L LLGLSPDTYFS+H D EDGTPL LPP FPP +L+TAL +YADLLS PKKSAL+AL
Sbjct: 367 LQLLGLSPDTYFSIHNDNEDGTPLSGGALPPPFPPSTLKTALARYADLLSLPKKSALMAL 426
Query: 429 AAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPR 488
AAHA+DPTEADRLRHLASPAGKDEYAQ +VA+QRSLLEVM+EFPSAKPPLGVFFA++ PR
Sbjct: 427 AAHATDPTEADRLRHLASPAGKDEYAQLLVANQRSLLEVMAEFPSAKPPLGVFFASVAPR 486
Query: 489 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 548
LQPRYYSISSSPR+APSRIHVTCALV EKT GR+HKG+CSTWMKN++P+EKS+DCSWAP
Sbjct: 487 LQPRYYSISSSPRMAPSRIHVTCALVLEKTLGGRIHKGVCSTWMKNAVPLEKSHDCSWAP 546
Query: 549 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRK 608
+FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQER AL+EAG+ELG S+LFFGCRNRK
Sbjct: 547 VFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERLALKEAGSELGSSVLFFGCRNRK 606
Query: 609 MDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG 668
MD+IYEDELNNFV+SGALS+L+VAFSREGPTKEYVQHKMM+K+SDIWNM+S+G YLYVCG
Sbjct: 607 MDFIYEDELNNFVESGALSELVVAFSREGPTKEYVQHKMMQKASDIWNMISQGGYLYVCG 666
Query: 669 DAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
DAK MA+DVHR LHTIVQEQGSLD+SK ES VK+LQM GRYLRDVW
Sbjct: 667 DAKGMAKDVHRALHTIVQEQGSLDNSKTESFVKSLQMNGRYLRDVW 712
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297735398|emb|CBI17838.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1145 bits (2963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/660 (83%), Positives = 611/660 (92%), Gaps = 1/660 (0%)
Query: 56 MILTTSIAVLIGCVVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQT 115
MILTTSIAVLIGCVVV I RRS + K EP KPL+VK+ EVEVDDGKQKVTIFFGTQT
Sbjct: 1 MILTTSIAVLIGCVVVLIWRRSGQKQSKTPEPPKPLIVKDLEVEVDDGKQKVTIFFGTQT 60
Query: 116 GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEP 175
GTAEGFAKALA+EA+ARY+KAIFKVVD+DDYA ++DEYEEKLKKE + FFFLATYGDGEP
Sbjct: 61 GTAEGFAKALAEEAKARYEKAIFKVVDLDDYAGDDDEYEEKLKKETLAFFFLATYGDGEP 120
Query: 176 TDNAARFYKWFTE-KEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234
TDNAARFYKWF E KE GEWLQ LKYGVFGLGNRQYEHFNK+AKVVD+I+ QG KR+VP
Sbjct: 121 TDNAARFYKWFAEGKERGEWLQNLKYGVFGLGNRQYEHFNKVAKVVDDIITEQGGKRIVP 180
Query: 235 VGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADAS 294
VGLGDDDQCIEDDF+AWREL+WPELD LLRD+DD TTVSTPYTAA+ EYRVVF+D AS
Sbjct: 181 VGLGDDDQCIEDDFAAWRELLWPELDQLLRDEDDATTVSTPYTAAVLEYRVVFHDPEGAS 240
Query: 295 VGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHV 354
+ +KSWG+ANGH V+DAQHPCR+NVAVRKELHTP+SDRSCTHLEFDI+GTGLTYETGDHV
Sbjct: 241 LQDKSWGSANGHTVHDAQHPCRANVAVRKELHTPASDRSCTHLEFDISGTGLTYETGDHV 300
Query: 355 GVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYA 414
GVYCENL ETVEEA LLG SPD YFS+HT++EDGTPL S+L P FPPC+LRTALT+YA
Sbjct: 301 GVYCENLPETVEEAERLLGFSPDVYFSIHTEREDGTPLSGSSLSPPFPPCTLRTALTRYA 360
Query: 415 DLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSA 474
D+LSSPKKSAL+ALAAHASDP+EADRL++LASP+GKDEYAQW+VASQRSLLE+M+EFPSA
Sbjct: 361 DVLSSPKKSALVALAAHASDPSEADRLKYLASPSGKDEYAQWVVASQRSLLEIMAEFPSA 420
Query: 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN 534
KPPLGVFFAA+ PRLQPRYYSISSSP++ PSRIHVTCALV +K PTGR+HKG+CSTWMK
Sbjct: 421 KPPLGVFFAAVAPRLQPRYYSISSSPKMVPSRIHVTCALVCDKMPTGRIHKGICSTWMKY 480
Query: 535 SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE 594
++P+E+S DCSWAPIFVRQSNFKLPAD VPIIMIGPGTGLAPFRGFLQERFAL+EAGAE
Sbjct: 481 AVPLEESQDCSWAPIFVRQSNFKLPADTSVPIIMIGPGTGLAPFRGFLQERFALKEAGAE 540
Query: 595 LGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDI 654
LG S+LFFGCRNRKMDYIYEDELN FV+SGALS+LIVAFSREGPTKEYVQHKMMEK+SDI
Sbjct: 541 LGSSILFFGCRNRKMDYIYEDELNGFVESGALSELIVAFSREGPTKEYVQHKMMEKASDI 600
Query: 655 WNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
WN++S+G Y+YVCGDAK MARDVHRTLHTI+QEQGSLDSSKAESMVKNLQMTGRYLRDVW
Sbjct: 601 WNVISQGGYIYVCGDAKGMARDVHRTLHTILQEQGSLDSSKAESMVKNLQMTGRYLRDVW 660
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6503253|gb|AAC09468.2| putative NADPH-cytochrome P450 reductase [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 1138 bits (2944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/708 (78%), Positives = 634/708 (89%), Gaps = 8/708 (1%)
Query: 9 ESGTMKVSPFDLMSAIIRGGKVDPSNVSSSGSGVEVASIVLDNKEFVMILTTSIAVLIGC 68
+S TMK SP DLM+AII+G K +PSN SS ASI+ +N+EFVMILTTSIAVLIGC
Sbjct: 3 DSSTMKFSPLDLMTAIIKG-KFNPSNDSSQAP----ASIIFENREFVMILTTSIAVLIGC 57
Query: 69 VVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADE 128
VVV I RRS+S+K K++E K ++ K PE++VDDGK+KVT+FFGTQTGTAEGFAKA+A+E
Sbjct: 58 VVVLIWRRSNSNKSKQIEVPKLVIKKLPELDVDDGKKKVTVFFGTQTGTAEGFAKAIAEE 117
Query: 129 ARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188
A+ARY+KA F+VVD+DDYA ++DEY EKLK+E + FFLATYGDGEPTDNAARFYKWFTE
Sbjct: 118 AKARYEKAKFRVVDMDDYAADDDEYLEKLKRETMALFFLATYGDGEPTDNAARFYKWFTE 177
Query: 189 KEGGEW--LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIED 246
+ GE + L YGVFGLGNRQYEHFNK+AKVVD+ L QG KRLVPVGLGDDDQCIED
Sbjct: 178 EYEGEEDSFKNLSYGVFGLGNRQYEHFNKVAKVVDDKLLEQGGKRLVPVGLGDDDQCIED 237
Query: 247 DFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGH 306
DF+AW+E +WP LD LLRD+DD T V+TPYTAA+SEYRVV +D DA+V EK N NGH
Sbjct: 238 DFTAWKEELWPALDQLLRDEDD-TPVATPYTAAVSEYRVVIHDPLDATVDEKKRHNVNGH 296
Query: 307 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVE 366
AV DAQHP R+NVAVR+ELHTP+SDRSCTHLEFDI+GTG+ YETGDHVGVYCENLS+TVE
Sbjct: 297 AVVDAQHPVRANVAVRRELHTPASDRSCTHLEFDISGTGVVYETGDHVGVYCENLSDTVE 356
Query: 367 EALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALL 426
EA +LGLSPDTY S+HTD E+G PLG S+LPP FPPC+LRTALTKYADLLSSPKKSAL+
Sbjct: 357 EAERILGLSPDTYLSIHTDDEEGKPLGGSSLPPPFPPCTLRTALTKYADLLSSPKKSALV 416
Query: 427 ALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIV 486
ALAAHASDP+EADRLRHLASPAGKDEYA+W+++SQRSLLEVM+EF SAKPP+GVFFAA+
Sbjct: 417 ALAAHASDPSEADRLRHLASPAGKDEYAEWVISSQRSLLEVMAEFSSAKPPIGVFFAAVA 476
Query: 487 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 546
PRLQPRYYSISSSPR+APSRIHVTCALV++K PTGR+HKG+CSTWMKNS+P+EK+ DCSW
Sbjct: 477 PRLQPRYYSISSSPRMAPSRIHVTCALVHDKMPTGRIHKGVCSTWMKNSVPLEKNQDCSW 536
Query: 547 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 606
APIFVRQSNF+LPAD KVP+IMIGPGTGLAPFRGFLQER AL+E GAELGPS+LFFGCRN
Sbjct: 537 APIFVRQSNFRLPADNKVPVIMIGPGTGLAPFRGFLQERLALKEDGAELGPSVLFFGCRN 596
Query: 607 RKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYV 666
R++DYIYEDELN+FV GALS+LIVAFSR+GPTKEYVQHKMMEK+SDIWNM+S+GAY+YV
Sbjct: 597 RQVDYIYEDELNHFVNGGALSELIVAFSRDGPTKEYVQHKMMEKASDIWNMISQGAYVYV 656
Query: 667 CGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
CGDAK MARDVHRTLHTI+QEQGSLDSSK ESMVKNLQMTGRYLRDVW
Sbjct: 657 CGDAKGMARDVHRTLHTILQEQGSLDSSKTESMVKNLQMTGRYLRDVW 704
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 714 | ||||||
| TAIR|locus:2121894 | 692 | ATR1 "P450 reductase 1" [Arabi | 0.928 | 0.958 | 0.621 | 1.2e-221 | |
| UNIPROTKB|F1P7R1 | 703 | POR "NADPH--cytochrome P450 re | 0.822 | 0.834 | 0.390 | 9.7e-112 | |
| UNIPROTKB|A5D9D3 | 680 | POR "NADPH--cytochrome P450 re | 0.823 | 0.864 | 0.389 | 2e-111 | |
| UNIPROTKB|Q3SYT8 | 678 | POR "NADPH--cytochrome P450 re | 0.823 | 0.867 | 0.389 | 2e-111 | |
| UNIPROTKB|F1P2T2 | 679 | POR "NADPH--cytochrome P450 re | 0.822 | 0.864 | 0.389 | 5.3e-111 | |
| UNIPROTKB|P04175 | 678 | POR "NADPH--cytochrome P450 re | 0.822 | 0.865 | 0.391 | 6.8e-111 | |
| UNIPROTKB|P16435 | 677 | POR "NADPH--cytochrome P450 re | 0.822 | 0.867 | 0.385 | 1.8e-110 | |
| RGD|68335 | 678 | Por "P450 (cytochrome) oxidore | 0.823 | 0.867 | 0.381 | 2.6e-109 | |
| MGI|MGI:97744 | 678 | Por "P450 (cytochrome) oxidore | 0.823 | 0.867 | 0.381 | 3.4e-109 | |
| FB|FBgn0015623 | 679 | Cpr "Cytochrome P450 reductase | 0.826 | 0.868 | 0.395 | 4.3e-109 |
| TAIR|locus:2121894 ATR1 "P450 reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2140 (758.4 bits), Expect = 1.2e-221, P = 1.2e-221
Identities = 418/673 (62%), Positives = 497/673 (73%)
Query: 49 LDNKEFVMILTTSIAVLIGCVVVFILRRXXXXXXXXXXXXXXXXXXXXXXXXDD-----G 103
L + ++I TTS+A++ G VV+ + ++ DD G
Sbjct: 23 LSDDVVLVIATTSLALVAGFVVL-LWKKTTADRSGELKPLMIPKSLMAKDEDDDLDLGSG 81
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIV 163
K +V+IFFGTQTGTAEGFAKAL++E +ARY+KA KV+ KLKKE +
Sbjct: 82 KTRVSIFFGTQTGTAEGFAKALSEEIKARYEKAAVKVIDLDDYAADDDQYEEKLKKETLA 141
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEK-EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 222
FF +ATYGDGEPTDNAARFYKWFTE+ E LQ+L YGVF LGNRQYEHFNKI V+DE
Sbjct: 142 FFCVATYGDGEPTDNAARFYKWFTEENERDIKLQQLAYGVFALGNRQYEHFNKIGIVLDE 201
Query: 223 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISE 282
L +GAKRL+ VGLGDDDQ IEDDF+AW+E +W ELD LL+D+DD + V+TPYTA I E
Sbjct: 202 ELCKKGAKRLIEVGLGDDDQSIEDDFNAWKESLWSELDKLLKDEDDKS-VATPYTAVIPE 260
Query: 283 YRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 342
YRVV +D + ANG+ D HPCR +VAV+KELHT SDRSC HLEFDI+
Sbjct: 261 YRVVTHDPRFTTQKSMESNVANGNTTIDIHHPCRVDVAVQKELHTHESDRSCIHLEFDIS 320
Query: 343 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP 402
TG+TYETGDHVGVY EN E VEEA LLG S D FS+H DKEDG+PL +S +PP FP
Sbjct: 321 RTGITYETGDHVGVYAENHVEIVEEAGKLLGHSLDLVFSIHADKEDGSPL-ESAVPPPFP 379
Query: 403 -PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAGKDEYAQWIVASQ 461
PC+L T L +Y +EA++L+HL SP GKDEY+QWIVASQ
Sbjct: 380 GPCTLGTGLARYADLLNPPRKSALVALAAYATEPSEAEKLKHLTSPDGKDEYSQWIVASQ 439
Query: 462 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG 521
RSLLEVM+ FPSAKPPLGVFFAAI PRLQPRYYSISSSPR+APSR+HVT ALVY TPTG
Sbjct: 440 RSLLEVMAAFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRLAPSRVHVTSALVYGPTPTG 499
Query: 522 RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGF 581
R+HKG+CSTWMKN++P EKS++CS APIF+R SNFKLP++ PI+M+GPGTGLAPFRGF
Sbjct: 500 RIHKGVCSTWMKNAVPAEKSHECSGAPIFIRASNFKLPSNPSTPIVMVGPGTGLAPFRGF 559
Query: 582 LQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKE 641
LQER AL+E G ELG SLLFFGCRNR+MD+IYEDELNNFV G +S+LI+AFSREG KE
Sbjct: 560 LQERMALKEDGEELGSSLLFFGCRNRQMDFIYEDELNNFVDQGVISELIMAFSREGAQKE 619
Query: 642 YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVK 701
YVQHKMMEK++ +W+++ E YLYVCGDAK MARDVHRTLHTIVQEQ + SS+AE++VK
Sbjct: 620 YVQHKMMEKAAQVWDLIKEEGYLYVCGDAKGMARDVHRTLHTIVQEQEGVSSSEAEAIVK 679
Query: 702 NLQMTGRYLRDVW 714
LQ GRYLRDVW
Sbjct: 680 KLQTEGRYLRDVW 692
|
|
| UNIPROTKB|F1P7R1 POR "NADPH--cytochrome P450 reductase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
Identities = 243/623 (39%), Positives = 361/623 (57%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKEN-IV 163
+ + +F+G+QTGTAE FA L+ +A RY + + + EN +
Sbjct: 103 RNIIVFYGSQTGTAEEFANRLSKDAH-RYG---MRGMAADPEEYDLADLGSLPEIENSLA 158
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 223
F +ATYG+G+PTDNA FY W E + L +KY VFGLGN+ YEHFN + K VD+
Sbjct: 159 VFCMATYGEGDPTDNAQDFYDWLQETDVD--LSGVKYAVFGLGNKTYEHFNAMGKYVDKR 216
Query: 224 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEY 283
L GA+R+ +G+GDDD +E+DF WRE WP + + +T ++I +Y
Sbjct: 217 LEQLGAQRIFELGMGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQY 270
Query: 284 RVVFYDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTH 336
+V + + D + VGE KS+ N +DA++P + V ++L+ ++R H
Sbjct: 271 ELVVHTDIDMAKVYVGEMGRLKSYENQK--PPFDAKNPFLAAVTTNRKLNQ-GTERHLMH 327
Query: 337 LEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKST 396
LE DI+ + L YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 328 LELDISDSKLRYESGDHVAVYPANDSALVNQLGEILGADLDVVMSLNNLDEE------SN 381
Query: 397 LPPTFP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEY 453
FP P S RTALT Y TE + LR +AS +G K+ Y
Sbjct: 382 KKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPTEQEHLRKMASSSGEGKELY 441
Query: 454 AQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCAL 513
W+V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ CA+
Sbjct: 442 LSWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHI-CAV 499
Query: 514 VYE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPG 572
E +T +GR++KG+ ++W++ P ++ + P+FVR+S F+LP A P+IM+GPG
Sbjct: 500 AVEYQTRSGRINKGVATSWLRAKEPAGENGRRALVPMFVRKSQFRLPFKAATPVIMVGPG 559
Query: 573 TGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632
TG+APF GF+QER L++ G E+G +LL++GCR DY+Y +EL F Q G+L+QL VA
Sbjct: 560 TGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHQDGSLTQLNVA 619
Query: 633 FSREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 691
FSRE P K YVQH + +W ++ E GA++YVCGDA++MARDV T + IV E G++
Sbjct: 620 FSREQPHKVYVQHLLKRDKEHLWQLIHEAGAHIYVCGDARNMARDVQNTFYDIVAEVGAM 679
Query: 692 DSSKAESMVKNLQMTGRYLRDVW 714
+ ++A +K L GRY DVW
Sbjct: 680 EHAQAVDYIKKLMTKGRYSLDVW 702
|
|
| UNIPROTKB|A5D9D3 POR "NADPH--cytochrome P450 reductase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 242/622 (38%), Positives = 363/622 (58%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVF 164
+ + +F+G+QTGTAE FA L+ +A RY +++K +
Sbjct: 80 RNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGM-AADPEEYDLADLSSLPEIEKA-LAI 136
Query: 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 224
F +ATYG+G+PTDNA FY W E + L +KY VF LGN+ YEHFN + K VD+ L
Sbjct: 137 FCMATYGEGDPTDNAQDFYDWLQETDVD--LSGVKYAVFALGNKTYEHFNAMGKYVDKRL 194
Query: 225 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYR 284
GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y
Sbjct: 195 EQLGAQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYE 248
Query: 285 VVFYDNAD-ASV--GE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHL 337
++ + + D A V GE KS+ N +DA++P + V ++L+ ++R HL
Sbjct: 249 LMVHTDMDMAKVYTGEMGRLKSYENQK--PPFDAKNPFLAVVTTNRKLNQ-GTERHLMHL 305
Query: 338 EFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 397
E DI+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 306 ELDISDSKIRYESGDHVAVYPANDSALVNQLGEILGADLDIIMSLNNLDEE------SNK 359
Query: 398 PPTFP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEYA 454
FP P S RTALT Y TE ++LR +AS +G K+ Y
Sbjct: 360 KHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPTEHEQLRKMASSSGEGKELYL 419
Query: 455 QWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV 514
+W++ ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ CA+
Sbjct: 420 RWVLEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHI-CAVA 477
Query: 515 YE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGT 573
E +T TGR++KG+ ++W++ P ++ + P++VR+S F+LP A P+IM+GPGT
Sbjct: 478 VEYETKTGRINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATTPVIMVGPGT 537
Query: 574 GLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633
G+APF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + GAL+QL VAF
Sbjct: 538 GVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAGFHKDGALTQLNVAF 597
Query: 634 SREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLD 692
SRE P K YVQH + + +W ++ EG A++YVCGDA++MARDV T + IV EQG+++
Sbjct: 598 SREQPQKVYVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYDIVAEQGAME 657
Query: 693 SSKAESMVKNLQMTGRYLRDVW 714
++A VK L GRY DVW
Sbjct: 658 HAQAVDYVKKLMTKGRYSLDVW 679
|
|
| UNIPROTKB|Q3SYT8 POR "NADPH--cytochrome P450 reductase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 242/622 (38%), Positives = 363/622 (58%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVF 164
+ + +F+G+QTGTAE FA L+ +A RY +++K +
Sbjct: 78 RNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGM-AADPEEYDLADLSSLPEIEKA-LAI 134
Query: 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 224
F +ATYG+G+PTDNA FY W E + L +KY VF LGN+ YEHFN + K VD+ L
Sbjct: 135 FCMATYGEGDPTDNAQDFYDWLQETDVD--LSGVKYAVFALGNKTYEHFNAMGKYVDKRL 192
Query: 225 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYR 284
GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y
Sbjct: 193 EQLGAQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYE 246
Query: 285 VVFYDNAD-ASV--GE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHL 337
++ + + D A V GE KS+ N +DA++P + V ++L+ ++R HL
Sbjct: 247 LMVHTDMDMAKVYTGEMGRLKSYENQK--PPFDAKNPFLAVVTTNRKLNQ-GTERHLMHL 303
Query: 338 EFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 397
E DI+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 304 ELDISDSKIRYESGDHVAVYPANDSALVNQLGEILGADLDIIMSLNNLDEE------SNK 357
Query: 398 PPTFP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEYA 454
FP P S RTALT Y TE ++LR +AS +G K+ Y
Sbjct: 358 KHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPTEHEQLRKMASSSGEGKELYL 417
Query: 455 QWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV 514
+W++ ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ CA+
Sbjct: 418 RWVLEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHI-CAVA 475
Query: 515 YE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGT 573
E +T TGR++KG+ ++W++ P ++ + P++VR+S F+LP A P+IM+GPGT
Sbjct: 476 VEYETKTGRINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATTPVIMVGPGT 535
Query: 574 GLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633
G+APF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + GAL+QL VAF
Sbjct: 536 GVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAGFHKDGALTQLNVAF 595
Query: 634 SREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLD 692
SRE P K YVQH + + +W ++ EG A++YVCGDA++MARDV T + IV EQG+++
Sbjct: 596 SREQPQKVYVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYDIVAEQGAME 655
Query: 693 SSKAESMVKNLQMTGRYLRDVW 714
++A VK L GRY DVW
Sbjct: 656 HAQAVDYVKKLMTKGRYSLDVW 677
|
|
| UNIPROTKB|F1P2T2 POR "NADPH--cytochrome P450 reductase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 242/622 (38%), Positives = 358/622 (57%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVF 164
+ + +F+G+QTGTAE FA L+ +A RY ++ K ++
Sbjct: 80 RNIVVFYGSQTGTAEEFANRLSKDAH-RYGLRGM-AADPEEYDLSDLSRLSEIDK-SLAV 136
Query: 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 224
F +ATYG+G+PTDNA FY W E + L L++ VFGLGN+ YEHFN + K VD+ L
Sbjct: 137 FCMATYGEGDPTDNAQDFYDWLQEADTD--LSGLRFAVFGLGNKTYEHFNAMGKYVDKRL 194
Query: 225 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYR 284
GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y
Sbjct: 195 EELGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYE 248
Query: 285 VVFYDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHL 337
+V + + + + GE KS+ N +DA++P + V ++L+ +R HL
Sbjct: 249 LVVHTDVNMNKVYTGEMGRLKSYENQK--PPFDAKNPFLAVVTENRKLNE-GGERHLMHL 305
Query: 338 EFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 397
E DI+ + + YE+GDHV VY N + V + +LG DT SL+ E+ S
Sbjct: 306 ELDISNSKIRYESGDHVAVYPANDASLVNQLGEILGTDLDTVMSLNNLDEE------SNK 359
Query: 398 PPTFP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPA--GKDEYA 454
FP P S RTALT Y E ++LR +AS + GK Y
Sbjct: 360 KHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYATDTGEQEQLRKMASSSAEGKALYL 419
Query: 455 QWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV 514
W+V ++R++L ++ + PS +PP+ ++PRLQ RYYSI+SS +V P+ IH+ CA+
Sbjct: 420 SWVVEARRNILAILQDMPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSIHI-CAVT 477
Query: 515 YE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGT 573
E +T TGR++KG+ + W+K+ +P E + S P++VR+S F+LP P+IMIGPGT
Sbjct: 478 VEYETKTGRLNKGVATNWLKDKVPNENGRN-SLVPMYVRKSQFRLPFKPSTPVIMIGPGT 536
Query: 574 GLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633
G+APF GF+QER L+E G E+G ++L++GCR + DY+Y EL F Q G L+QL VAF
Sbjct: 537 GIAPFIGFIQERAWLKEQGKEVGETVLYYGCRREREDYLYRQELARFKQEGVLTQLNVAF 596
Query: 634 SREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLD 692
SR+ K YVQH + + IW ++++G A++YVCGDA++MARDV T + IV E G+++
Sbjct: 597 SRDQAEKVYVQHLLKKNKEHIWKLVNDGNAHIYVCGDARNMARDVQNTFYEIVSEYGNMN 656
Query: 693 SSKAESMVKNLQMTGRYLRDVW 714
S+A VK L GRY DVW
Sbjct: 657 QSQAVDYVKKLMTKGRYSLDVW 678
|
|
| UNIPROTKB|P04175 POR "NADPH--cytochrome P450 reductase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
Identities = 244/623 (39%), Positives = 360/623 (57%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKEN-IV 163
+ + +F+G+QTGTAE FA L+ +A RY + + + EN +
Sbjct: 78 RNIIVFYGSQTGTAEEFANRLSKDAH-RYG---MRGMAADPEEYDLSDLSSLPEIENALA 133
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 223
F +ATYG+G+PTDNA FY W E + L +KY VFGLGN+ YEHFN + K VD+
Sbjct: 134 VFCMATYGEGDPTDNAQDFYDWLQEADVD--LTGVKYAVFGLGNKTYEHFNAMGKYVDKR 191
Query: 224 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEY 283
L GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y
Sbjct: 192 LEQLGAQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQY 245
Query: 284 RVVFYDNADASV---GE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTH 336
+V + + D +V GE KS+ N +DA++P + V ++L+ ++R H
Sbjct: 246 ELVVHTDMDTAVVYTGEMGRLKSYENQK--PPFDAKNPFLAVVTTNRKLNQ-GTERHLMH 302
Query: 337 LEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKST 396
LE DI+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 303 LELDISDSKIRYESGDHVAVYPANDSALVNQLGEILGTDLDIVMSLNNLDEE------SN 356
Query: 397 LPPTFP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEY 453
FP P + RTALT Y +E ++LR +AS +G K+ Y
Sbjct: 357 KRHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEQLRKMASSSGEGKELY 416
Query: 454 AQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCAL 513
W+V ++R +L ++ ++PS +PP+ +PRLQ RYYSI+SS +V P+ +H+ CA+
Sbjct: 417 LSWVVEARRHILAILQDYPSLRPPID-HLCERLPRLQARYYSIASSSKVHPNSVHI-CAV 474
Query: 514 VYE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPG 572
V E +T +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP A P+IM+GPG
Sbjct: 475 VVEYETKSGRVNKGVATSWLRAKEPAGENGRRALVPMFVRKSQFRLPFKATTPVIMVGPG 534
Query: 573 TGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632
TG+APF GF+QER LQE G E+G +LL++GCR DY+Y +EL F GAL++L VA
Sbjct: 535 TGVAPFIGFIQERAWLQEQGKEVGETLLYYGCRRSDEDYLYREELAQFHAKGALTRLSVA 594
Query: 633 FSREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSL 691
FSRE P K YVQH + +W ++ +G A++Y+CGDA++MARDV T IV EQG +
Sbjct: 595 FSREQPQKVYVQHLLKRDKEHLWKLIHDGGAHIYICGDARNMARDVQNTFCDIVAEQGPM 654
Query: 692 DSSKAESMVKNLQMTGRYLRDVW 714
+ ++A VK L GRY DVW
Sbjct: 655 EHAQAVDYVKKLMTKGRYSLDVW 677
|
|
| UNIPROTKB|P16435 POR "NADPH--cytochrome P450 reductase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
Identities = 240/622 (38%), Positives = 360/622 (57%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKEN-IV 163
+ + +F+G+QTGTAE FA L+ +A RY + + + +N +V
Sbjct: 78 RNIIVFYGSQTGTAEEFANRLSKDAH-RYG---MRGMSADPEEYDLADLSSLPEIDNALV 133
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 223
F +ATYG+G+PTDNA FY W E + L +K+ VFGLGN+ YEHFN + K VD+
Sbjct: 134 VFCMATYGEGDPTDNAQDFYDWLQETDVD--LSGVKFAVFGLGNKTYEHFNAMGKYVDKR 191
Query: 224 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEY 283
L GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y
Sbjct: 192 LEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQY 245
Query: 284 RVVFYDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTH 336
+V + + DA+ +GE KS+ N +DA++P + V ++L+ ++R H
Sbjct: 246 ELVVHTDIDAAKVYMGEMGRLKSYENQK--PPFDAKNPFLAAVTTNRKLNQ-GTERHLMH 302
Query: 337 LEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKST 396
LE DI+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 303 LELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SN 356
Query: 397 LPPTFP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEY 453
FP P S RTALT Y +E + LR +AS +G K+ Y
Sbjct: 357 KKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELY 416
Query: 454 AQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCAL 513
W+V ++R +L ++ + PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ CA+
Sbjct: 417 LSWVVEARRHILAILQDCPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHI-CAV 474
Query: 514 VYE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPG 572
V E +T GR++KG+ + W++ P ++ + P+FVR+S F+LP A P+IM+GPG
Sbjct: 475 VVEYETKAGRINKGVATNWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPG 534
Query: 573 TGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632
TG+APF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + GAL+QL VA
Sbjct: 535 TGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVA 594
Query: 633 FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLD 692
FSRE K YVQH + + +W ++ GA++YVCGDA++MARDV T + IV E G+++
Sbjct: 595 FSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAME 654
Query: 693 SSKAESMVKNLQMTGRYLRDVW 714
++A +K L GRY DVW
Sbjct: 655 HAQAVDYIKKLMTKGRYSLDVW 676
|
|
| RGD|68335 Por "P450 (cytochrome) oxidoreductase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
Identities = 237/622 (38%), Positives = 357/622 (57%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVF 164
+ + +F+G+QTGTAE FA L+ +A RY ++ K ++V
Sbjct: 78 RNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGMSA-DPEEYDLADLSSLPEIDK-SLVV 134
Query: 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 224
F +ATYG+G+PTDNA FY W E + L +K+ VFGLGN+ YEHFN + K VD+ L
Sbjct: 135 FCMATYGEGDPTDNAQDFYDWLQETDVD--LTGVKFAVFGLGNKTYEHFNAMGKYVDQRL 192
Query: 225 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYR 284
GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y
Sbjct: 193 EQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVE------ATGEESSIRQYE 246
Query: 285 VVFYDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHL 337
+V +++ D + GE KS+ N +DA++P + V ++L+ ++R HL
Sbjct: 247 LVVHEDMDVAKVYTGEMGRLKSYENQK--PPFDAKNPFLAAVTANRKLNQ-GTERHLMHL 303
Query: 338 EFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 397
E DI+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 304 ELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEE------SNK 357
Query: 398 PPTFP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEYA 454
FP P + RTALT Y +E + L +AS +G K+ Y
Sbjct: 358 KHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYL 417
Query: 455 QWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV 514
W+V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ CA+
Sbjct: 418 SWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHI-CAVA 475
Query: 515 YE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGT 573
E + +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP + P+IM+GPGT
Sbjct: 476 VEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGT 535
Query: 574 GLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633
G+APF GF+QER L+E G E+G +LL++GCR DY+Y +EL F + GAL+QL VAF
Sbjct: 536 GIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAF 595
Query: 634 SREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLD 692
SRE K YVQH + +W ++ EG A++YVCGDA++MA+DV T + IV E G ++
Sbjct: 596 SREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPME 655
Query: 693 SSKAESMVKNLQMTGRYLRDVW 714
++A VK L GRY DVW
Sbjct: 656 HTQAVDYVKKLMTKGRYSLDVW 677
|
|
| MGI|MGI:97744 Por "P450 (cytochrome) oxidoreductase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 237/622 (38%), Positives = 356/622 (57%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVF 164
+ + +F+G+QTGTAE FA L+ +A RY ++ K ++V
Sbjct: 78 RNIIVFYGSQTGTAEEFANRLSKDAH-RYGMRGMSA-DPEEYDLADLSSLPEIDK-SLVV 134
Query: 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 224
F +ATYG+G+PTDNA FY W E + L +K+ VFGLGN+ YEHFN + K VD+ L
Sbjct: 135 FCMATYGEGDPTDNAQDFYDWLQETDVD--LTGVKFAVFGLGNKTYEHFNAMGKYVDQRL 192
Query: 225 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYR 284
GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y
Sbjct: 193 EQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVE------ATGEESSIRQYE 246
Query: 285 VVFYDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHL 337
+V +++ D + GE KS+ N +DA++P + V ++L+ ++R HL
Sbjct: 247 LVVHEDMDTAKVYTGEMGRLKSYENQK--PPFDAKNPFLAAVTTNRKLNQ-GTERHLMHL 303
Query: 338 EFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 397
E DI+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 304 ELDISDSKIRYESGDHVAVYPANDSTLVNQIGEILGADLDVIMSLNNLDEE------SNK 357
Query: 398 PPTFP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEYA 454
FP P + RTALT Y +E + L +AS +G K+ Y
Sbjct: 358 KHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYL 417
Query: 455 QWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV 514
W+V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ CA+
Sbjct: 418 SWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHI-CAVA 475
Query: 515 YE-KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGT 573
E + +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP P+IM+GPGT
Sbjct: 476 VEYEAKSGRVNKGVATSWLRTKEPAGENGRRALVPMFVRKSQFRLPFKPTTPVIMVGPGT 535
Query: 574 GLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633
G+APF GF+QER L+E G E+G +LL++GCR DY+Y +EL F + GAL+QL VAF
Sbjct: 536 GVAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAF 595
Query: 634 SREGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLD 692
SRE K YVQH + +W ++ EG A++YVCGDA++MA+DV T + IV E G ++
Sbjct: 596 SREQAHKVYVQHLLKRDKEHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPME 655
Query: 693 SSKAESMVKNLQMTGRYLRDVW 714
++A VK L GRY DVW
Sbjct: 656 HTQAVDYVKKLMTKGRYSLDVW 677
|
|
| FB|FBgn0015623 Cpr "Cytochrome P450 reductase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 244/617 (39%), Positives = 346/617 (56%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVF 164
+ + +F+G+QTGT E FA LA E RY + +V K ++
Sbjct: 82 RSLVVFYGSQTGTGEEFAGRLAKEG-IRY--RLKGMVADPEECDMEELLQLKDIDNSLAV 138
Query: 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 224
F LATYG+G+PTDNA FY+W T G L L Y VFGLGN+ YEH+NK+A VD+ L
Sbjct: 139 FCLATYGEGDPTDNAMEFYEWITS--GDVDLSGLNYAVFGLGNKTYEHYNKVAIYVDKRL 196
Query: 225 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL-DNLLRDDDDPTTVSTPYTAAISEY 283
GA R+ +GLGDDD IEDDF W++ WP + D+ + + Y + E
Sbjct: 197 EELGANRVFELGLGDDDANIEDDFITWKDRFWPAVCDHFGIEGGGEEVLIRQYR--LLEQ 254
Query: 284 RVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAG 343
V D + N +DA++P + + V +ELH RSC H+E I G
Sbjct: 255 PDVQPDRIYTGEIARLHSIQNQRPPFDAKNPFLAPIKVNRELHK-GGGRSCMHIELSIEG 313
Query: 344 TGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSL-HTDKEDGTPLGKSTLPPTFP 402
+ + Y+ GDHV ++ N VE+ L DT FSL +TD + S P FP
Sbjct: 314 SKMRYDAGDHVAMFPVNDKSLVEKLGQLCNADLDTVFSLINTDTDS------SKKHP-FP 366
Query: 403 -PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLAS--PAGKDEYAQWIVA 459
P + RTALT Y E + LR +AS P GK++Y WI
Sbjct: 367 CPTTYRTALTHYLEITAIPRTHILKELAEYCTDEKEKELLRSMASISPEGKEKYQSWIQD 426
Query: 460 SQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTP 519
+ R+++ ++ + S +PP+ ++PRLQPRYYSISSS ++ P+ +HVT LV KTP
Sbjct: 427 ACRNIVHILEDIKSCRPPID-HVCELLPRLQPRYYSISSSAKLHPTDVHVTAVLVEYKTP 485
Query: 520 TGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFR 579
TGR++KG+ +T++KN P + S + P+F+R+S F+LP + PIIM+GPGTGLAPFR
Sbjct: 486 TGRINKGVATTYLKNKQP-QGSEEVK-VPVFIRKSQFRLPTKPETPIIMVGPGTGLAPFR 543
Query: 580 GFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT 639
GF+QER L++ G +G S+L+FGCR R DYIYE EL +V+ G L+ L AFSR+
Sbjct: 544 GFIQERQFLRDEGKTVGESILYFGCRKRSEDYIYESELEEWVKKGTLN-LKAAFSRDQGK 602
Query: 640 KEYVQHKMMEKSSD-IWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAE 697
K YVQH ++E+ +D IWN++ E + Y+CGDAK+MA DV L I+ +G++ + A
Sbjct: 603 KVYVQH-LLEQDADLIWNVIGENKGHFYICGDAKNMAVDVRNILVKILSTKGNMSEADAV 661
Query: 698 SMVKNLQMTGRYLRDVW 714
+K ++ RY DVW
Sbjct: 662 QYIKKMEAQKRYSADVW 678
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P00389 | NCPR_RABIT | 1, ., 6, ., 2, ., 4 | 0.3788 | 0.8907 | 0.9366 | yes | no |
| P00388 | NCPR_RAT | 1, ., 6, ., 2, ., 4 | 0.3832 | 0.8977 | 0.9454 | yes | no |
| P36587 | NCPR_SCHPO | 1, ., 6, ., 2, ., 4 | 0.3251 | 0.8599 | 0.9056 | yes | no |
| P16603 | NCPR_YEAST | 1, ., 6, ., 2, ., 4 | 0.3082 | 0.8235 | 0.8509 | yes | no |
| Q55CT1 | REDB_DICDI | 1, ., 6, ., -, ., - | 0.3580 | 0.8977 | 0.9610 | yes | no |
| P04175 | NCPR_PIG | 1, ., 6, ., 2, ., 4 | 0.3785 | 0.9075 | 0.9557 | yes | no |
| Q9SUM3 | NCPR2_ARATH | 1, ., 6, ., 2, ., 4 | 0.7450 | 0.9733 | 0.9774 | yes | no |
| P16435 | NCPR_HUMAN | 1, ., 6, ., 2, ., 4 | 0.3741 | 0.9145 | 0.9645 | yes | no |
| Q4WM67 | NCPR_ASPFU | 1, ., 6, ., 2, ., 4 | 0.3486 | 0.8389 | 0.8618 | yes | no |
| P37116 | NCPR_VIGRR | 1, ., 6, ., 2, ., 4 | 0.7013 | 0.9327 | 0.9652 | N/A | no |
| Q05001 | NCPR_CATRO | 1, ., 6, ., 2, ., 4 | 0.7706 | 0.9859 | 0.9859 | N/A | no |
| P37040 | NCPR_MOUSE | 1, ., 6, ., 2, ., 4 | 0.3817 | 0.8977 | 0.9454 | yes | no |
| Q5BFT5 | NCPR_EMENI | 1, ., 6, ., 2, ., 4 | 0.3557 | 0.8375 | 0.8604 | yes | no |
| Q00141 | NCPR_ASPNG | 1, ., 6, ., 2, ., 4 | 0.3516 | 0.8375 | 0.8616 | yes | no |
| A2QS05 | NCPR_ASPNC | 1, ., 6, ., 2, ., 4 | 0.3541 | 0.8375 | 0.8604 | yes | no |
| Q3SYT8 | NCPR_BOVIN | 1, ., 6, ., 2, ., 4 | 0.3793 | 0.8879 | 0.9351 | yes | no |
| Q2UHA7 | NCPR_ASPOR | 1, ., 6, ., 2, ., 4 | 0.3496 | 0.8375 | 0.8604 | yes | no |
| Q27597 | NCPR_DROME | 1, ., 6, ., 2, ., 4 | 0.3813 | 0.8739 | 0.9189 | yes | no |
| P37039 | NCPR_CAVPO | 1, ., 6, ., 2, ., 4 | 0.3762 | 0.8865 | 0.9336 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 714 | |||
| cd06204 | 416 | cd06204, CYPOR, NADPH cytochrome p450 reductase (C | 0.0 | |
| COG0369 | 587 | COG0369, CysJ, Sulfite reductase, alpha subunit (f | 1e-155 | |
| cd06207 | 382 | cd06207, CyPoR_like, NADPH cytochrome p450 reducta | 1e-123 | |
| cd06199 | 360 | cd06199, SiR, Cytochrome p450- like alpha subunits | 1e-117 | |
| TIGR01931 | 597 | TIGR01931, cysJ, sulfite reductase [NADPH] flavopr | 1e-115 | |
| cd06203 | 398 | cd06203, methionine_synthase_red, Human methionine | 1e-104 | |
| cd06202 | 406 | cd06202, Nitric_oxide_synthase, The ferredoxin-red | 1e-104 | |
| pfam00667 | 217 | pfam00667, FAD_binding_1, FAD binding domain | 1e-101 | |
| cd06206 | 384 | cd06206, bifunctional_CYPOR, These bifunctional pr | 5e-94 | |
| PRK06214 | 530 | PRK06214, PRK06214, sulfite reductase; Provisional | 2e-90 | |
| cd06182 | 267 | cd06182, CYPOR_like, NADPH cytochrome p450 reducta | 2e-84 | |
| PRK10953 | 600 | PRK10953, cysJ, sulfite reductase subunit alpha; P | 3e-77 | |
| pfam00258 | 142 | pfam00258, Flavodoxin_1, Flavodoxin | 5e-41 | |
| cd06200 | 245 | cd06200, SiR_like1, Cytochrome p450- like alpha su | 2e-37 | |
| cd00322 | 223 | cd00322, FNR_like, Ferredoxin reductase (FNR), an | 4e-30 | |
| cd06201 | 289 | cd06201, SiR_like2, Cytochrome p450- like alpha su | 1e-29 | |
| cd06208 | 286 | cd06208, CYPOR_like_FNR, These ferredoxin reductas | 3e-29 | |
| pfam00175 | 106 | pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi | 7e-19 | |
| PLN03116 | 307 | PLN03116, PLN03116, ferredoxin--NADP+ reductase; P | 1e-16 | |
| TIGR03224 | 411 | TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reduc | 4e-12 | |
| PRK08105 | 149 | PRK08105, PRK08105, flavodoxin; Provisional | 1e-09 | |
| PLN03115 | 367 | PLN03115, PLN03115, ferredoxin--NADP(+) reductase; | 1e-09 | |
| COG0716 | 151 | COG0716, FldA, Flavodoxins [Energy production and | 7e-08 | |
| cd06211 | 238 | cd06211, phenol_2-monooxygenase_like, Phenol 2-mon | 1e-06 | |
| cd06182 | 267 | cd06182, CYPOR_like, NADPH cytochrome p450 reducta | 7e-06 | |
| TIGR01753 | 140 | TIGR01753, flav_short, flavodoxin, short chain | 2e-05 | |
| PRK09267 | 169 | PRK09267, PRK09267, flavodoxin FldA; Validated | 2e-05 | |
| cd06216 | 243 | cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi | 3e-05 | |
| COG4097 | 438 | COG4097, COG4097, Predicted ferric reductase [Inor | 4e-05 | |
| COG0543 | 252 | COG0543, UbiB, 2-polyprenylphenol hydroxylase and | 4e-05 | |
| cd06209 | 228 | cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reduc | 6e-05 | |
| cd06195 | 241 | cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i | 1e-04 | |
| TIGR01752 | 167 | TIGR01752, flav_long, flavodoxin, long chain | 2e-04 | |
| PRK07308 | 146 | PRK07308, PRK07308, flavodoxin; Validated | 4e-04 | |
| PRK09004 | 146 | PRK09004, PRK09004, FMN-binding protein MioC; Prov | 4e-04 | |
| PRK06703 | 151 | PRK06703, PRK06703, flavodoxin; Provisional | 0.001 | |
| cd06187 | 224 | cd06187, O2ase_reductase_like, The oxygenase reduc | 0.002 | |
| cd06184 | 247 | cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P) | 0.003 |
| >gnl|CDD|99801 cd06204, CYPOR, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 615 bits (1588), Expect = 0.0
Identities = 211/423 (49%), Positives = 276/423 (65%), Gaps = 25/423 (5%)
Query: 310 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEAL 369
DA++P + VAV +EL T S DRSC H+EFDI+G+G+ Y+TGDH+ V+ N SE VE L
Sbjct: 1 DAKNPFLAPVAVSRELFTGS-DRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLL 59
Query: 370 SLLGLS-PDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLAL 428
+LGL DT SL + E S P P + RTAL Y D+ + + L AL
Sbjct: 60 KVLGLDDRDTVISLKSLDEPA-----SKKVPFPCPTTYRTALRHYLDITAPVSRQVLAAL 114
Query: 429 AAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKP--PLGVFFAAIV 486
A A DP E +RL LAS GKDEYA+WIV R+LLEV+ +FPSAKP P F ++
Sbjct: 115 AQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQDFPSAKPTPPPFDFLIELL 173
Query: 487 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPME------- 539
PRLQPRYYSISSS +V P+RIH+T +V TPTGR+ KG+ + W+ P
Sbjct: 174 PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233
Query: 540 --------KSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA 591
K S P+FVR+SNF+LP P+IMIGPGTG+APFRGF+QER AL+E+
Sbjct: 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKES 293
Query: 592 GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKS 651
G ++GP+LLFFGCR+ D+IY+DEL + + G L +L+ AFSRE P K YVQH++ E +
Sbjct: 294 GKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHA 353
Query: 652 SDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLR 711
+W +++EGAY+YVCGDAK+MARDV +TL I+ EQG + ++AE VK L+ GRY
Sbjct: 354 EQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGGMTETEAEEYVKKLKTRGRYQE 413
Query: 712 DVW 714
DVW
Sbjct: 414 DVW 416
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 416 |
| >gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 462 bits (1191), Expect = e-155
Identities = 205/612 (33%), Positives = 306/612 (50%), Gaps = 72/612 (11%)
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIV 163
+ +T+ +G+QTG AEG A+ LA E A V +DDY ++ + +E ++
Sbjct: 47 NKPITVLYGSQTGNAEGLAEELAKELEA--AGLQVLVASLDDYKPKD------IAEERLL 98
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 223
F ++T G+GEP DNA F+++ K+ + L L+Y V GLG+ YE F + K D
Sbjct: 99 LFVVSTQGEGEPPDNAVAFHEFLKGKKAPK-LDGLRYAVLGLGDSSYEFFCQAGKDFDRR 157
Query: 224 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEY 283
L GA RL P D Q E + WR+ V L + + + S Y
Sbjct: 158 LQELGATRLFPRVEADV-QDFEAAAAPWRDDVLELLKSKFPGQEAAPAQVATSPQSESPY 216
Query: 284 RVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAG 343
SV + ++L SD+ H+E D+
Sbjct: 217 SKP-----APSVAI---------------------LLENRKLTGRDSDKDVRHIELDLPD 250
Query: 344 TGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPP 403
+GL YE GD +GV+ EN E V+E L LLGL P+ ++ +
Sbjct: 251 SGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVDGE-----------------T 293
Query: 404 CSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRS 463
L AL + + +S KS L LA A L L D A +R+
Sbjct: 294 LPLVEALKSHFEF-TSAPKSLLENLAHFAGQEELRRLLEQL------DIADLQDYAKRRT 346
Query: 464 LLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRV 523
L++V+ +FP AK P ++P L+PR YSI+SSP V+P +H+T +V + GR
Sbjct: 347 LIDVLRDFPPAKLPAE-ELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRE 404
Query: 524 HKGLCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFL 582
G+CS ++ + L + P+FV+ NF+LP D + PIIMIGPGTG+APFR F+
Sbjct: 405 RYGVCSGYLADLLEEGDT-----IPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAFV 459
Query: 583 QERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEY 642
QER A G + LFFGCR+ D++Y++E +++ G L++L +AFSR+ K Y
Sbjct: 460 QERAANGAEGK----NWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIY 515
Query: 643 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 702
VQ ++ E++ ++W L EGA++YVCGDAK MA+DV L I+ ++G L +AE +K
Sbjct: 516 VQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKE 575
Query: 703 LQMTGRYLRDVW 714
L+ GRY RDV+
Sbjct: 576 LKKEGRYQRDVY 587
|
Length = 587 |
| >gnl|CDD|99803 cd06207, CyPoR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 371 bits (954), Expect = e-123
Identities = 164/394 (41%), Positives = 231/394 (58%), Gaps = 19/394 (4%)
Query: 323 KELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSL 382
K L DRS H+EFD+ G+GL+YETGD++G+Y EN V+E L+ LGL D +
Sbjct: 6 KRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRV 65
Query: 383 HTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRL 441
++ + PP FP P S+R L K+ D+ P K L L+ A+D E + L
Sbjct: 66 EPNE------QQRGKPP-FPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDL 118
Query: 442 RHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPR 501
LAS G+ EY ++ + + LEV+ +FPS +P L + P ++PRYYSISSSP
Sbjct: 119 YKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPTLE-QLLELCPLIKPRYYSISSSPL 174
Query: 502 VAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPAD 561
P+ +H+ +LV KTP+GR GLCS+++ +F+++S+FKLP D
Sbjct: 175 KNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKV------GQRVTVFIKKSSFKLPKD 228
Query: 562 AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFV 621
K PIIM+GPGTGLAPFR FLQER AL G E+GP LL+FGCR+ DY+Y++EL +
Sbjct: 229 PKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYE 288
Query: 622 QSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGA-YLYVCGDAKSMARDVHRT 680
+SG L+ L AFSR+ P K YVQ + E S ++ +L EGA +YVCG M DV
Sbjct: 289 KSGVLTTLGTAFSRDQPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEA 348
Query: 681 LHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
I+++ G D AE ++ L+ GRY+ + W
Sbjct: 349 FEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 382 |
| >gnl|CDD|99796 cd06199, SiR, Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Score = 356 bits (917), Expect = e-117
Identities = 155/399 (38%), Positives = 220/399 (55%), Gaps = 43/399 (10%)
Query: 319 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDT 378
V + L P S++ H+E D+ G+GL+YE GD +GVY N V+E L+ LGLS D
Sbjct: 2 VLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDE 61
Query: 379 YFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEA 438
S T PL R AL K+ ++ + LLAL + T A
Sbjct: 62 PVS--TVGGGTLPL--------------REALIKHYEI-----TTLLLALLESYAADTGA 100
Query: 439 DRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPL-GVFFAAIVPRLQPRYYSIS 497
L LA+ +A+ L +V+ P L ++ LQPR YSI+
Sbjct: 101 LELLALAALEAVLAFAE--------LRDVLDLLPIPPARLTAEELLDLLRPLQPRLYSIA 152
Query: 498 SSPRVAPSRIHVTCALV-YEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-N 555
SSP+ P +H+T A+V YE GR KG+ ST++ + L K D P+FV+ + +
Sbjct: 153 SSPKAVPDEVHLTVAVVRYESH--GRERKGVASTFLADRL---KEGDT--VPVFVQPNPH 205
Query: 556 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYED 615
F+LP D PIIM+GPGTG+APFR FLQER A GA+ G + LFFG R+ D++Y+D
Sbjct: 206 FRLPEDPDAPIIMVGPGTGIAPFRAFLQEREAT---GAK-GKNWLFFGERHFATDFLYQD 261
Query: 616 ELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR 675
EL +++ G L++L AFSR+ K YVQ +M E+ +++W L EGA+ YVCGDAK MA+
Sbjct: 262 ELQQWLKDGVLTRLDTAFSRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAK 321
Query: 676 DVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
DV L I+ +G +D +AE+ +K L+ RY RDV+
Sbjct: 322 DVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDVY 360
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. Length = 360 |
| >gnl|CDD|233643 TIGR01931, cysJ, sulfite reductase [NADPH] flavoprotein, alpha-component | Back alignment and domain information |
|---|
Score = 358 bits (920), Expect = e-115
Identities = 201/611 (32%), Positives = 312/611 (51%), Gaps = 73/611 (11%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVF 164
++VTI +G+QTG A AK LA++ A ++ DDY ++LKKE ++
Sbjct: 59 KRVTILYGSQTGNARRLAKRLAEKLEAA--GFSVRLSSADDYK------FKQLKKERLLL 110
Query: 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 224
++T G+GEP + A F+K+ K+ + L+ L+Y V GLG+ YE F + K D+ L
Sbjct: 111 LVISTQGEGEPPEEAISFHKFLHSKKAPK-LENLRYSVLGLGDSSYEFFCQTGKDFDKRL 169
Query: 225 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYR 284
G KRL+P D D + + + WR V L+ + STP
Sbjct: 170 EELGGKRLLP--RVDADLDYDANAAEWRAGVLTALNEQA-----KGSASTP--------- 213
Query: 285 VVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT 344
S+ E + +VY Q+P R+ V +++ +S + H+E D+ G+
Sbjct: 214 ---------SLSETPARSQTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLEGS 264
Query: 345 GLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPC 404
GL YE GD +GV+ +N V+E L LL L PD ++ G T+P
Sbjct: 265 GLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTI----------GGKTIP------ 308
Query: 405 SLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSL 464
L AL + +L + K LL A + E L +A Y Q L
Sbjct: 309 -LFEALITHFELTQNTK--PLLEAYAELTGNKELKAL--IADNEKLKAYIQ-----NTPL 358
Query: 465 LEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVH 524
++++ ++P+ +++ L PR YSISSS +H+T +V GR
Sbjct: 359 IDLIRDYPADLDAEQ--LISLLRPLTPRLYSISSSQSEVGDEVHLTVGVV-RYQAHGRAR 415
Query: 525 KGLCSTWMKNSLPMEKSNDCSWAPIFV-RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQ 583
G S ++ L K D P+++ NF+LP D PIIMIGPGTG+APFR F+Q
Sbjct: 416 LGGASGFLAERL---KEGDT--VPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQ 470
Query: 584 ERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYV 643
ER E GA+ G + LFFG + D++Y+ E N+++ G L+++ +AFSR+ K YV
Sbjct: 471 ER---AEDGAK-GKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYV 526
Query: 644 QHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNL 703
QH++ E+ +++W L EGA++YVCGDAK MA+DVH+ L I+ ++G LD+ +AE + +L
Sbjct: 527 QHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDL 586
Query: 704 QMTGRYLRDVW 714
++ RY RDV+
Sbjct: 587 RVEKRYQRDVY 597
|
This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase. Length = 597 |
| >gnl|CDD|99800 cd06203, methionine_synthase_red, Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate | Back alignment and domain information |
|---|
Score = 324 bits (832), Expect = e-104
Identities = 149/389 (38%), Positives = 217/389 (55%), Gaps = 21/389 (5%)
Query: 337 LEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFSLHTDKEDGTPLGK 394
L D++ TG Y+ GD +G+ N + VE L LGL D + +
Sbjct: 20 LTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVP-NTKKKN- 77
Query: 395 STLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEY 453
+ +P P +LRT LT D+ + PKK L ALA SD E RL L S G ++Y
Sbjct: 78 AKVPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDY 137
Query: 454 AQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCAL 513
++ SLL+++ FPS +PPL + + PRLQPR YSI+SSP P ++ ++
Sbjct: 138 TDFVRKRGLSLLDLLEAFPSCRPPLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSV 196
Query: 514 VYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FKLPAD-AKVPIIMIGP 571
V GLC++W+++ S+ P ++R S+ F+LP D + PIIM+GP
Sbjct: 197 VEFPAK------GLCTSWLESLCLSASSHGVKV-PFYLRSSSRFRLPPDDLRRPIIMVGP 249
Query: 572 GTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 629
GTG+APF GFLQ R L+E+ G + LFFGCR+R DY++ DEL F++ G L++L
Sbjct: 250 GTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRL 309
Query: 630 IVAFSRE---GPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIV 685
IVAFSR+ G T +YVQ K+ E+ + ++L A +YVCGDAK MA+DV T I+
Sbjct: 310 IVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDIL 369
Query: 686 QEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
++ LD +A+ ++ L+ RYL DVW
Sbjct: 370 SKELGLDKLEAKKLLARLRKEDRYLEDVW 398
|
In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 398 |
| >gnl|CDD|99799 cd06202, Nitric_oxide_synthase, The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain | Back alignment and domain information |
|---|
Score = 323 bits (831), Expect = e-104
Identities = 161/410 (39%), Positives = 224/410 (54%), Gaps = 25/410 (6%)
Query: 319 VAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLL--GLS 375
V R+ L +P S RS ++ D G L Y+ GDHVG++ N E V+ L L
Sbjct: 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPP 61
Query: 376 PDTYFSLHTDKEDGTPLG-KSTLPP--TFPPCSLRTALTKYADLLSSPKKSALLALAAHA 432
PD L +E T LG T P PPC+LR ALT+Y D+ + P L LA A
Sbjct: 62 PDQVIKLEVLEERSTALGIIKTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLA 121
Query: 433 SDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPR 492
+D + +RL L G EY W ++LEV+ EFPS + P + + P LQPR
Sbjct: 122 TDEKDKERLEVLG--KGSSEYEDWKWYKNPNILEVLEEFPSLQVPASLLLTQL-PLLQPR 178
Query: 493 YYSISSSPRVAPSRIHVTCALVYEKTPTGR--VHKGLCSTWMKNSLPMEKSNDCSWAPIF 550
YYSISSSP + P IH+T A+V +T G+ VH G+CSTW+ P + P F
Sbjct: 179 YYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDT------VPCF 232
Query: 551 VRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQER----FALQEAGAELGPSLLFFGCR 605
VR +F LP D VP+IM+GPGTG+APFR F Q+R ++ G + G LFFGCR
Sbjct: 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCR 292
Query: 606 NRKMDYIYEDELNNFVQSGALSQLIVAFSRE-GPTKEYVQHKMMEKSSDIWNML-SEGAY 663
N +D IY++E G L+++ A SRE G K YVQ + E++ +++ L EG +
Sbjct: 293 NSTIDDIYKEETEEAKNKGVLTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGH 352
Query: 664 LYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDV 713
+YVCGD +MA DV +T+ I+ E G++ + +AE + L+ RY D+
Sbjct: 353 IYVCGDV-TMAEDVSQTIQRILAEHGNMSAEEAEEFILKLRDENRYHEDI 401
|
The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation. Length = 406 |
| >gnl|CDD|216051 pfam00667, FAD_binding_1, FAD binding domain | Back alignment and domain information |
|---|
Score = 308 bits (790), Expect = e-101
Identities = 113/223 (50%), Positives = 143/223 (64%), Gaps = 7/223 (3%)
Query: 309 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 368
+DA++P ++V V +EL +P SDRSC HLE DI+G+GL Y+TGDH+GVY N E VEE
Sbjct: 2 FDAKNPFLASVVVNRELTSPGSDRSCIHLELDISGSGLRYQTGDHLGVYPSNDEELVEEL 61
Query: 369 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLAL 428
L LLGL PDT SL E P PP +LR ALT Y ++ P K L AL
Sbjct: 62 LELLGLDPDTVVSLEALDER------WVKHPFPPPTTLRQALTYYLEITGPPTKQLLEAL 115
Query: 429 AAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPR 488
A +ASD E RL L+S AGK EY +W + R+LLEV+ EFPSA+ P F ++PR
Sbjct: 116 AQYASDEEEKQRLEKLSSDAGKQEYKEWKLNKARTLLEVLEEFPSAQLPAE-FLLELLPR 174
Query: 489 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 531
LQPRYYSISSSP+V P+ +HVT +V +T GR+ KG+ S W
Sbjct: 175 LQPRYYSISSSPKVHPNEVHVTVVVVEYETGEGRIRKGVASNW 217
|
This domain is found in sulfite reductase, NADPH cytochrome P450 reductase, Nitric oxide synthase and methionine synthase reductase. Length = 217 |
| >gnl|CDD|99802 cd06206, bifunctional_CYPOR, These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR) | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = 5e-94
Identities = 140/406 (34%), Positives = 206/406 (50%), Gaps = 33/406 (8%)
Query: 319 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDT 378
V +EL P S HLE + G+TY GD++ V N E V AL GL+ DT
Sbjct: 2 VVENRELTAPGVGPSKRHLELRLP-DGMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDT 60
Query: 379 YFSLHTDKEDGT-PLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTE 437
++ PLG P S+ L+ Y +L + L ALA P
Sbjct: 61 VLTISASGSATGLPLGT--------PISVSELLSSYVELSQPATRRQLAALAEATRCPDT 112
Query: 438 ADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSIS 497
L LA + YA ++A + S+L+++ FPS PL F A++P ++PR YSIS
Sbjct: 113 KALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALPLATF-LAMLPPMRPRQYSIS 167
Query: 498 SSPRVAPSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN- 555
SSP V P +T +++ +G+ ++G+ S+++ + P + + VR S+
Sbjct: 168 SSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDS------IHVSVRPSHS 221
Query: 556 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYE 614
F+ P+D P+IMI GTGLAPFRGFLQER AL G +L P+LLFFGCR+ D +Y
Sbjct: 222 AFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYR 281
Query: 615 DELNNFVQSGALSQLIVAFSR--EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS 672
DEL + +G +S + A+SR G + YVQ ++ + ++W + +GA +YVCGD +
Sbjct: 282 DELEEWEAAGVVS-VRRAYSRPPGGGCR-YVQDRLWAEREEVWELWEQGARVYVCGDGR- 338
Query: 673 MARDVHRTLHTIVQEQGSLDS-SKAESMVKNLQM---TGRYLRDVW 714
MA V L I E+ S E + L+ GRY DV+
Sbjct: 339 MAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGRYATDVF 384
|
NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 384 |
| >gnl|CDD|235745 PRK06214, PRK06214, sulfite reductase; Provisional | Back alignment and domain information |
|---|
Score = 292 bits (749), Expect = 2e-90
Identities = 149/427 (34%), Positives = 215/427 (50%), Gaps = 42/427 (9%)
Query: 290 NADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYE 349
A A+ A G +P + R+ L+ P S++ H+E D+AG+GL YE
Sbjct: 144 PAAAAADAAPAAAALGPLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYE 203
Query: 350 TGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTA 409
GD +G++ N V+ ++ LG P+ P+G TL R A
Sbjct: 204 VGDSLGLFPANDPALVDAVIAALGAPPEF------------PIGGKTL---------REA 242
Query: 410 LTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMS 469
L + L +P L L ++ + + R LA+ D A + +L +
Sbjct: 243 LLEDVSLGPAP--DGLFELLSYITGGAARKKARALAAGEDPDGDAATL-----DVLAALE 295
Query: 470 EFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV-YEKTPTGRVHKGLC 528
+FP +P F A+ P LQPR YSISSSP+ P R+ +T V YE R+ G+
Sbjct: 296 KFPGIRPDPEAFVEALDP-LQPRLYSISSSPKATPGRVSLTVDAVRYEIG--SRLRLGVA 352
Query: 529 STWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 587
ST++ L ++V+++ F LPAD PIIM+GPGTG+APFR FL ER A
Sbjct: 353 STFLGERLAPGTR-----VRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAA 407
Query: 588 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 647
+ G + LFFG + D+ YEDELN +G L++L +A+SR+G K YVQ +M
Sbjct: 408 TKAPGR----NWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDGEEKTYVQDRM 463
Query: 648 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 707
E +++W L EGA+ YVCGDAK MA+DV R L IV + G +A + V L+ G
Sbjct: 464 RENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAG 523
Query: 708 RYLRDVW 714
RY DV+
Sbjct: 524 RYQADVY 530
|
Length = 530 |
| >gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 2e-84
Identities = 113/235 (48%), Positives = 154/235 (65%), Gaps = 10/235 (4%)
Query: 484 AIVP--RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKS 541
++P LQPRYYSI+SSP V P +H+ +V + P GR+ KG+CS ++ K
Sbjct: 39 GVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGAK- 97
Query: 542 NDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLL 600
+F+R + +F+LP D PIIM+GPGTG+APFRGFLQER AL+ G GP+ L
Sbjct: 98 -----VTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWL 152
Query: 601 FFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEKSSDIWNMLS 659
FFGCRN DY+Y +EL ++ GAL++L VAFSRE K YVQ K+ E + ++ +L+
Sbjct: 153 FFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDKLKEHAEELRRLLN 212
Query: 660 EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
EGA++YVCGDAKSMA+DV L I+ + G +D S AE +K L+ GRY+ DVW
Sbjct: 213 EGAHIYVCGDAKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267 |
| >gnl|CDD|182862 PRK10953, cysJ, sulfite reductase subunit alpha; Provisional | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 3e-77
Identities = 183/630 (29%), Positives = 297/630 (47%), Gaps = 111/630 (17%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKK---EN 161
+T+ +QTG A A+ L D+ A K +V+ DY K K+ E
Sbjct: 62 PGITLISASQTGNARRVAEQLRDDLLAA--KLNVNLVNAGDY---------KFKQIAQEK 110
Query: 162 IVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVD 221
++ +T G+GEP + A +K+ K+ + L+ + VFGLG+ YE F + K D
Sbjct: 111 LLIVVTSTQGEGEPPEEAVALHKFLFSKKAPK-LENTAFAVFGLGDTSYEFFCQAGKDFD 169
Query: 222 EILANQGAKRLVP-VGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAI 280
LA GA+RL+ V D D + S WR V L + V+ P +
Sbjct: 170 SKLAELGAERLLDRV---DADVEYQAAASEWRARVVDALKSRA------PAVAAPSQSV- 219
Query: 281 SEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 340
A +V E + Y + P ++++V +++ +S++ H+E D
Sbjct: 220 ----------ATGAVNEIH------TSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEID 263
Query: 341 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 400
+ +GL Y+ GD +GV+ +N V+E + LL L D ++ GK TLP
Sbjct: 264 LGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVD---------GK-TLP-- 311
Query: 401 FPPCSLRTALT--------------KYADLLSSPKKSALLALAAHASDPTEADRLRHLAS 446
L AL YA L + LL L + L+H A
Sbjct: 312 -----LAEALQWHFELTVNTANIVENYATL---TRSETLLPLVGDKA------ALQHYA- 356
Query: 447 PAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSR 506
+ + M F A+ + P L PR YSI+SS +
Sbjct: 357 --------------ATTPIVDMVRFAPAQLDAEQLIGLLRP-LTPRLYSIASSQAEVENE 401
Query: 507 IHVTCALV-YEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKV 564
+H+T +V Y+ GR G S+++ + L E+ + +F+ + NF+LPA+ +
Sbjct: 402 VHITVGVVRYDIE--GRARAGGASSFLADRL--EEEGEVR---VFIEHNDNFRLPANPET 454
Query: 565 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 624
P+IMIGPGTG+APFR F+Q+R A GA G + LFFG + D++Y+ E +V+ G
Sbjct: 455 PVIMIGPGTGIAPFRAFMQQRAA---DGAP-GKNWLFFGNPHFTEDFLYQVEWQRYVKEG 510
Query: 625 ALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684
L+++ +A+SR+ K YVQ K+ E+ +++W +++GA++YVCGDA MA+DV + L +
Sbjct: 511 LLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEV 570
Query: 685 VQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
+ E G +D+ A+ + L++ RY RDV+
Sbjct: 571 IAEFGGMDTEAADEFLSELRVERRYQRDVY 600
|
Length = 600 |
| >gnl|CDD|215823 pfam00258, Flavodoxin_1, Flavodoxin | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 5e-41
Identities = 62/149 (41%), Positives = 84/149 (56%), Gaps = 13/149 (8%)
Query: 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLA 168
IF+G+QTG E A+ALA+ + + VV +DD + E+ + +E++V F +
Sbjct: 1 IFYGSQTGNTEKLAEALAEGLKEAGFEV--VVVSLDDVDETEE-----ILEEDLVLFVTS 53
Query: 169 TYGDGEPTDNAARFYKWFTEK---EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILA 225
TYGDGEP DNA F W G L L+Y VFGLG+ YE F AK +DE LA
Sbjct: 54 TYGDGEPPDNAKPFEDWLLLFGLPLEGGDLSGLRYAVFGLGDSGYEGFCWAAKKLDEKLA 113
Query: 226 NQGAKRLVPVGLGDDD---QCIEDDFSAW 251
GAKR+ P+G GD+D +E+ F AW
Sbjct: 114 ELGAKRVGPLGEGDEDTQEDDLEEAFEAW 142
|
Length = 142 |
| >gnl|CDD|99797 cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-37
Identities = 77/238 (32%), Positives = 109/238 (45%), Gaps = 36/238 (15%)
Query: 483 AAIVPR--LQPRYYSISSSPRVAPSRIHVTCALVYEKT-PTGRVHKGLCSTWMKNSLPME 539
A I PR L R YSI+S P+ + LV + G + GL S W+ P+
Sbjct: 38 AEIGPRHPLPHREYSIAS----LPADGAL-ELLVRQVRHADGGL--GLGSGWLTRHAPI- 89
Query: 540 KSNDCSWAPI---FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELG 596
A + F LP D P+I+IG GTGLA R L+ R A A
Sbjct: 90 ------GASVALRLRENPGFHLPDDG-RPLILIGNGTGLAGLRSHLRAR-----ARAGRH 137
Query: 597 PSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWN 656
+ L FG R D+ +EL + +G L++L +AFSR+ K YVQ ++ + ++
Sbjct: 138 RNWLLFGERQAAHDFFCREELEAWQAAGHLARLDLAFSRDQAQKRYVQDRLRAAADELRA 197
Query: 657 MLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
++EGA +YVCG + MA V L I+ E V+ L GRY RDV+
Sbjct: 198 WVAEGAAIYVCGSLQGMAPGVDAVLDEIL----------GEEAVEALLAAGRYRRDVY 245
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 245 |
| >gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 4e-30
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 25/203 (12%)
Query: 481 FFAAIVPRLQPRYYSISSSPRVAPS-RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPME 539
R R YSI+SSP + V V G S W+ + P +
Sbjct: 31 LHLPGDGRGLRRAYSIASSPDEEGELELTV-----------KIVPGGPFSAWLHDLKPGD 79
Query: 540 KSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSL 599
+ + +F LP + P+++I G G+ PFR L+ A G
Sbjct: 80 E------VEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAAD----KPGGEIT 129
Query: 600 LFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML- 658
L +G R D ++ DEL + G +L++A SRE K ++ ++ + +
Sbjct: 130 LLYGARTPA-DLLFLDELEELAKEGPNFRLVLALSRESEAKLGPGGRIDREAEILALLPD 188
Query: 659 SEGAYLYVCGDAKSMARDVHRTL 681
GA +Y+CG +MA+ V L
Sbjct: 189 DSGALVYICGPP-AMAKAVREAL 210
|
FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223 |
| >gnl|CDD|99798 cd06201, SiR_like2, Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 40/227 (17%)
Query: 491 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVH-KGLCSTWMKNSLPMEKSNDCSWAPI 549
PR+YS++SS I V R H GLCS ++ + L K D A
Sbjct: 100 PRFYSLASSSSDGFLEICV------------RKHPGGLCSGYL-HGL---KPGDTIKA-- 141
Query: 550 FVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRK 608
F+R +F+ A P+I+IG GTG+AP GF++ A + P L++G R+
Sbjct: 142 FIRPNPSFRPAKGAA-PVILIGAGTGIAPLAGFIRANAARR-------PMHLYWGGRDPA 193
Query: 609 MDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG 668
D++YEDEL+ ++ G L+QL AFSR P YVQ ++ + + ++ +GA + VCG
Sbjct: 194 SDFLYEDELDQYLADGRLTQLHTAFSR-TPDGAYVQDRLRADAERLRRLIEDGAQIMVCG 252
Query: 669 DAKSMARDVHRTLHTI-VQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
+++MA+ V L I + SLD K + GRY DV+
Sbjct: 253 -SRAMAQGVAAVLEEILAPQPLSLDELKLQ---------GRYAEDVY 289
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 289 |
| >gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 73/231 (31%), Positives = 102/231 (44%), Gaps = 31/231 (13%)
Query: 491 PRYYSISSSPRVAPSRIHVTCAL-----VYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCS 545
R YSI+SS R T +L VY T KG+CS ++ + P +
Sbjct: 64 LRLYSIASS-RYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDD----- 117
Query: 546 WAPIFVR-----QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSL- 599
V+ LP D +IMI GTG+APFR FL+ F + A +
Sbjct: 118 -----VQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAW 172
Query: 600 LFFGCRNRKMDYIYEDELNNFV-QSGALSQLIVAFSREGP----TKEYVQHKMMEKSSDI 654
LFFG N +Y+DEL + Q ++ AFSRE K YVQ ++ E + +I
Sbjct: 173 LFFGVPNSD-SLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEI 231
Query: 655 WNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 704
WN+L + ++Y+CG K M V L T V E G ES+ K +
Sbjct: 232 WNLLDKDNTHVYICG-LKGMEPGVDDAL-TSVAEGGLAWEEFWESLKKKGR 280
|
Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 286 |
| >gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 7e-19
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 568 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 627
MI GTG+AP L+ ++ L +G R D + +EL + +
Sbjct: 1 MIAGGTGIAPLYSVLKALLEDEDG----TEVYLVYGNRTED-DLLLREELEELAKK-YPN 54
Query: 628 QLIVAFSREGPTKE----YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 679
+VA SR YV ++E+ +YVCG M + V +
Sbjct: 55 LKVVAVSRTDDGWYGRKGYVTDALLEEHLSE---DLGDTDVYVCG-PPPMMKAVRK 106
|
Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106 |
| >gnl|CDD|215586 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 29/232 (12%)
Query: 491 PRYYSISSSPRVAPSRIHVTCAL-----VYEKTPTGRV---HKGLCSTWMKNSLPMEKSN 542
R YSI+S+ R T +L VY TG+ KG+CS ++ ++ P +K
Sbjct: 81 VRLYSIAST-RYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDK-- 137
Query: 543 DCSWAPIFVRQSNFK---LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-GP 597
+ + + K LP D IM+ GTG+APFRGFL+ F + G
Sbjct: 138 ------VQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGL 191
Query: 598 SLLFFGCRNRKMDYIYEDELNNFVQSGALS-QLIVAFSREGPTKE----YVQHKMMEKSS 652
+ LF G N +Y+DE +++ + + A SRE K+ YVQ K+ E S
Sbjct: 192 AWLFLGVANSD-SLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSD 250
Query: 653 DIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 704
+I+ +L GA++Y CG K M + TL + +E+G K + KN Q
Sbjct: 251 EIFKLLDNGAHIYFCG-LKGMMPGIQDTLKRVAEERGESWEEKLSGLKKNKQ 301
|
Length = 307 |
| >gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 4e-12
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 21/145 (14%)
Query: 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 613
S F +P + I+MI GTG AP R + R ++ G E G +LFFG R ++
Sbjct: 258 STFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE----- 311
Query: 614 EDELNNFVQSGALSQLI-------VAFSRE-GPTKEYVQHKMMEKSSDIWNML-SEGAYL 664
EL F G L +L AFSR K YVQ + E+++D+ +L Y+
Sbjct: 312 --ELPYF---GPLQKLPKDFIDINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYI 366
Query: 665 YVCGDAKSMARDVHRTLHTIVQEQG 689
Y+CG K M V + G
Sbjct: 367 YICG-LKGMEEGVLDAFRDVCATNG 390
|
Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB [Energy metabolism, Other]. Length = 411 |
| >gnl|CDD|181230 PRK08105, PRK08105, flavodoxin; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-09
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARAR-YDKAIFKVVDIDDYADEEDEYEEKLKKENIVF 164
KV IF GT G A A+ A+ ++ +F+ ++ D+ +DE V
Sbjct: 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDEL---------VL 53
Query: 165 FFLATYGDGEPTDNAARFYKWFTE-KEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 223
+T G G+ D+ F K+ + L+YGV LG+ Y++F K D +
Sbjct: 54 VVTSTTGQGDLPDSIV---PLFQALKDTAGYQPNLRYGVIALGDSSYDNFCGAGKQFDAL 110
Query: 224 LANQGAKRLVPV 235
L QGAKR+
Sbjct: 111 LQEQGAKRVGER 122
|
Length = 149 |
| >gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 19/209 (9%)
Query: 492 RYYSISSSP--RVAPSRIHVTCA--LVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 547
R YSI+SS S+ C LVY G + KG+CS ++ + P +
Sbjct: 146 RLYSIASSALGDFGDSKTVSLCVKRLVYTND-QGEIVKGVCSNFLCDLKPGAEVKIT--G 202
Query: 548 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-GPSLLFFGCRN 606
P+ +P D IIM+ GTG+APFR FL + F + + G + LF G
Sbjct: 203 PV---GKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPT 259
Query: 607 RKMDYIYEDELNNFVQSGALS-QLIVAFSREGPT----KEYVQHKMMEKSSDIWNML-SE 660
+Y++E + + +L A SRE K Y+Q +M E + ++W +L +
Sbjct: 260 SS-SLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKD 318
Query: 661 GAYLYVCGDAKSMARDVHRTLHTIVQEQG 689
Y+Y+CG K M + + + ++ + G
Sbjct: 319 NTYVYMCG-LKGMEKGIDDIMVSLAAKDG 346
|
Length = 367 |
| >gnl|CDD|223788 COG0716, FldA, Flavodoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-08
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 21/162 (12%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKV-VDIDDYADEEDEYEEKLKKENIVF 164
K+ I +G++TG E A+ +A+E A F+V +DI ++ +
Sbjct: 3 KILIVYGSRTGNTEKVAEIIAEELGA----DGFEVDIDIRPGIKDDLLESYD-----ELL 53
Query: 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYE-HFNKIAKVVDEI 223
T+G GE D+ +Y + E E ++ K VFGLG++ Y +F + ++I
Sbjct: 54 LGTPTWGAGELPDD---WYDFIEELEPIDFKGK-LVAVFGLGDQSYYGYFCEAGGNFEDI 109
Query: 224 LANQGAK--RLVPV-GLGDDDQCIEDDFSA---WRELVWPEL 259
L +GAK ++ G D E+D W + + EL
Sbjct: 110 LEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQILNEL 151
|
Length = 151 |
| >gnl|CDD|99807 cd06211, phenol_2-monooxygenase_like, Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 46/154 (29%), Positives = 58/154 (37%), Gaps = 30/154 (19%)
Query: 490 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSND-----C 544
R +SI+SSP A I + LV T VHK L K D
Sbjct: 51 GTRAFSIASSPSDAGE-IELHIRLVPGGIATTYVHKQL------------KEGDELEISG 97
Query: 545 SWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGC 604
+ FVR S + PII I G+GL+ R + L E G LFFG
Sbjct: 98 PYGDFFVRDS-------DQRPIIFIAGGSGLSSPRSMI---LDLLERGDTR-KITLFFGA 146
Query: 605 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP 638
R R + Y DE + + + A SRE P
Sbjct: 147 RTRA-ELYYLDEFEALEKDHPNFKYVPALSREPP 179
|
This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. Length = 238 |
| >gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 318 NVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 360
+ V ++L P S RS HLEFD++G + L Y+ GDH+GV N
Sbjct: 1 AITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267 |
| >gnl|CDD|233559 TIGR01753, flav_short, flavodoxin, short chain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 107 VTIFFGTQTGTAEGFAKALADEAR-ARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
+ I + + TG E A +A+ + A + + +V D D E L + V
Sbjct: 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADA---------EDLLSYDAVLL 51
Query: 166 FLATYGDGE-PTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEIL 224
+T+GD + D+ F++ + + L K +FG G+ YE F + +E L
Sbjct: 52 GCSTWGDEDLEQDDFEPFFEELEDID----LGGKKVALFGSGDWGYE-FCEAVDDWEERL 106
Query: 225 ANQGAK 230
GA
Sbjct: 107 KEAGAT 112
|
Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction [Energy metabolism, Electron transport]. Length = 140 |
| >gnl|CDD|236439 PRK09267, PRK09267, flavodoxin FldA; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED--EYEEKLKKENIV 163
K+ IFFG+ TG E AK + + K + VVDI A +ED Y+ ++
Sbjct: 3 KIGIFFGSDTGNTEDIAKMIQKK----LGKDVADVVDIAK-ASKEDFEAYD-------LL 50
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVD 221
+ T+G GE + F E + K +FGLG+++ Y E+F +
Sbjct: 51 ILGIPTWGYGELQCDWDDFLPELEEID----FSGKKVALFGLGDQEDYAEYFCDAMGTLY 106
Query: 222 EILANQGAK 230
+I+ +GA
Sbjct: 107 DIVEPRGAT 115
|
Length = 169 |
| >gnl|CDD|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 19/130 (14%)
Query: 488 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 547
R YS+SSSP I +T P G V S W+ +
Sbjct: 61 VRHWRSYSLSSSPTQEDGTITLTVK----AQPDGLV-----SNWL-----VNHLAPGDVV 106
Query: 548 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 607
+ Q +F LP +++I G+G+ P L+ + A++ LL++
Sbjct: 107 ELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRT-LLARGPTADV--VLLYYARTRE 163
Query: 608 KMDYIYEDEL 617
D I+ DEL
Sbjct: 164 --DVIFADEL 171
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 243 |
| >gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 567 IMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 626
+ I G G+ PF L A + P + F C + +Y +EL Q
Sbjct: 319 VWIAGGIGITPFISMLFT-----LAERKSDPPVHLFYCSRNWEEALYAEELRALAQKLPN 373
Query: 627 SQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH 682
L + S + Y+ + +E+ D ++ CG M + R L
Sbjct: 374 VVLHIIDSSKDG---YLDQEDLERYPD----RPRTRSVFFCG-PIKMMDSLRRDLK 421
|
Length = 438 |
| >gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 40/219 (18%)
Query: 464 LLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS-RIHVTCALVYEKTPTGR 522
LL + F + G F VP R YS++S+P +H+ VYE
Sbjct: 24 LLRLRLPFVALTFKPGQFVMLRVPGGVRRPYSLASAPDDKGELELHIR---VYEV----- 75
Query: 523 VHKGLCSTWMKNSLPMEKSNDCSWAPIFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRG 580
G + ++ K D I VR N L P+++I GTG+AP
Sbjct: 76 ---GKVTKYIFG----LKEGD----KIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYA 124
Query: 581 FLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT- 639
+E L+E G + L +G R K D + DEL + + + +G
Sbjct: 125 IAKE---LKEKG-DANKVTLLYGARTAK-DLLLLDELEELA-----EKEVHPVTDDGWKG 174
Query: 640 -KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDV 677
K +V ++++ D E +Y+CG +M + V
Sbjct: 175 RKGFVTTDVLKELLD-----LEVDDVYICG-PPAMVKAV 207
|
Length = 252 |
| >gnl|CDD|99805 cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 6e-05
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 565 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS- 623
P++M+ GTGLAPF L L E G+ P L +G R D + D L +
Sbjct: 104 PLLMLAGGTGLAPFLSMLD---VLAEDGSAH-PVHLVYGV-TRDADLVELDRLEALAERL 158
Query: 624 GALSQLIVAFS--REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG 668
S V P K YV + + ++ +Y+CG
Sbjct: 159 PGFSFRTVVADPDSWHPRKGYVTDHLEAE-----DLNDGDVDVYLCG 200
|
Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. Length = 228 |
| >gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 566 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 625
+ ++ GTG+APF L++ E +L G R + + Y+DE+ +
Sbjct: 104 LWLLATGTGIAPFLSMLRD----LEIWERFDKIVLVHGVRYAE-ELAYQDEIEALAKQYN 158
Query: 626 LSQLIV--AFSRE-------GPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD 676
+ SRE G + ++ +E+ + + E +++ +CG+ + M D
Sbjct: 159 -GKFRYVPIVSREKENGALTGRIPDLIESGELEEHAG-LPLDPETSHVMLCGNPQ-MIDD 215
Query: 677 VHRTL 681
L
Sbjct: 216 TQELL 220
|
Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241 |
| >gnl|CDD|233558 TIGR01752, flav_long, flavodoxin, long chain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD-YADEEDEYEEKLKKENIVF 164
K+ IF+GT TG EG A+ + E + V +I ++ + Y+ +
Sbjct: 1 KIGIFYGTDTGNTEGIAEKIQKE----LGEDDVDVFNIAKASKEDLNAYD-------KLI 49
Query: 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGN-RQY-EHFNKIAKVVDE 222
T+G GE ++ F E + +FGLG+ Y E F ++ +
Sbjct: 50 LGTPTWGVGELQEDWEDFLPTLEELD----FTGKTVALFGLGDQEGYSETFCDGMGILYD 105
Query: 223 ILANQGAK 230
+ +GAK
Sbjct: 106 KIKARGAK 113
|
Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli [Energy metabolism, Electron transport]. Length = 167 |
| >gnl|CDD|180922 PRK07308, PRK07308, flavodoxin; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-EEDEYEEKLKKENIVFFFL 167
I + + TG E A +AD+ R + VD+D+ + ++E+ +I
Sbjct: 6 IVYASMTGNTEEIADIVADKLRE-----LGHDVDVDECTTVDASDFEDA----DIAIVAT 56
Query: 168 ATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQ 227
TYGDGE D FY+ + + L YGV G G+ Y++F K + A
Sbjct: 57 YTYGDGELPDEIVDFYEDLADLD----LSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALT 112
Query: 228 GAKR---LVPVGLGDDDQCIE 245
GA + V V L +D+ IE
Sbjct: 113 GATKGAESVKVDLAAEDEDIE 133
|
Length = 146 |
| >gnl|CDD|181608 PRK09004, PRK09004, FMN-binding protein MioC; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQG 228
T+G G+ DN F++ E++ L ++++ G+G+ +Y+ F ++++L +G
Sbjct: 56 THGAGDLPDNLQPFFEELQEQKPD--LSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKG 113
Query: 229 AKRLVP 234
AK++
Sbjct: 114 AKQIGE 119
|
Length = 146 |
| >gnl|CDD|235854 PRK06703, PRK06703, flavodoxin; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.001
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIV 163
K+ I + + +G E A + A +D + + ++D A+E Y+ +
Sbjct: 2 AKILIAYASMSGNTEDIADLIKVSLDA-FDHEV-VLQEMDGMDAEELLAYD-------GI 52
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 223
T+GDG+ A F++ + L K VFG G+ Y F + + +E
Sbjct: 53 ILGSYTWGDGDLPYEAEDFHEDLENID----LSGKKVAVFGSGDTAYPLFCEAVTIFEER 108
Query: 224 LANQGAKRLVPVGL 237
L +GA+ LV GL
Sbjct: 109 LVERGAE-LVQEGL 121
|
Length = 151 |
| >gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 28/138 (20%)
Query: 490 QPRYYSISSSPRVAPSRI--HVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 547
R YS ++ P I HV V G S + + L K D
Sbjct: 40 TWRAYSPANPPN-EDGEIEFHVR-----------AVPGGRVSNALHDEL---KVGD---- 80
Query: 548 PIFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCR 605
+ + F L D P++ I GTGLAP R +++ G P LFFG R
Sbjct: 81 RVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVED---ALRRGEPR-PVHLFFGAR 136
Query: 606 NRKMDYIYEDELNNFVQS 623
+ D + L
Sbjct: 137 TER-DLYDLEGLLALAAR 153
|
Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 224 |
| >gnl|CDD|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.003
Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 31/198 (15%)
Query: 490 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSND---CSW 546
Q R YS+S +P RI V K R GL S ++ +++ K D S
Sbjct: 56 QIRQYSLSDAPNGDYYRISV-------K----REPGGLVSNYLHDNV---KVGDVLEVS- 100
Query: 547 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 606
AP +F L + P+++I G G+ P L+ E P RN
Sbjct: 101 AP----AGDFVLDEASDRPLVLISAGVGITPMLSMLEA--LAAEGPGR--PVTFIHAARN 152
Query: 607 RKMDYIYEDELNNFVQSGALSQLIVAFSREGPT---KEYVQHKMMEKSSDIWNMLSEGAY 663
+ + DEL +L V +S ++Y ++ + +L A
Sbjct: 153 SA-VHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLRELLLPADAD 211
Query: 664 LYVCGDAKSMARDVHRTL 681
Y+CG M + V L
Sbjct: 212 FYLCGPVPFM-QAVREGL 228
|
Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. Length = 247 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 714 | |||
| KOG1159 | 574 | consensus NADP-dependent flavoprotein reductase [E | 100.0 | |
| KOG1158 | 645 | consensus NADP/FAD dependent oxidoreductase [Energ | 100.0 | |
| PRK10953 | 600 | cysJ sulfite reductase subunit alpha; Provisional | 100.0 | |
| TIGR01931 | 597 | cysJ sulfite reductase [NADPH] flavoprotein, alpha | 100.0 | |
| COG0369 | 587 | CysJ Sulfite reductase, alpha subunit (flavoprotei | 100.0 | |
| cd06204 | 416 | CYPOR NADPH cytochrome p450 reductase (CYPOR) serv | 100.0 | |
| cd06203 | 398 | methionine_synthase_red Human methionine synthase | 100.0 | |
| cd06202 | 406 | Nitric_oxide_synthase The ferredoxin-reductase (FN | 100.0 | |
| cd06207 | 382 | CyPoR_like NADPH cytochrome p450 reductase (CYPOR) | 100.0 | |
| cd06206 | 384 | bifunctional_CYPOR These bifunctional proteins fus | 100.0 | |
| cd06199 | 360 | SiR Cytochrome p450- like alpha subunits of E. col | 100.0 | |
| PRK06214 | 530 | sulfite reductase; Provisional | 100.0 | |
| PF00667 | 219 | FAD_binding_1: FAD binding domain; InterPro: IPR00 | 100.0 | |
| PLN03115 | 367 | ferredoxin--NADP(+) reductase; Provisional | 100.0 | |
| cd06182 | 267 | CYPOR_like NADPH cytochrome p450 reductase (CYPOR) | 100.0 | |
| cd06201 | 289 | SiR_like2 Cytochrome p450- like alpha subunits of | 100.0 | |
| cd06200 | 245 | SiR_like1 Cytochrome p450- like alpha subunits of | 100.0 | |
| PLN03116 | 307 | ferredoxin--NADP+ reductase; Provisional | 100.0 | |
| TIGR03224 | 411 | benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p | 100.0 | |
| cd06208 | 286 | CYPOR_like_FNR These ferredoxin reductases are rel | 100.0 | |
| PRK09004 | 146 | FMN-binding protein MioC; Provisional | 100.0 | |
| PRK05723 | 151 | flavodoxin; Provisional | 100.0 | |
| PRK08105 | 149 | flavodoxin; Provisional | 100.0 | |
| PF00258 | 143 | Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This | 99.94 | |
| cd00322 | 223 | FNR_like Ferredoxin reductase (FNR), an FAD and NA | 99.92 | |
| PRK07308 | 146 | flavodoxin; Validated | 99.92 | |
| PRK10926 | 248 | ferredoxin-NADP reductase; Provisional | 99.91 | |
| cd06188 | 283 | NADH_quinone_reductase Na+-translocating NADH:quin | 99.91 | |
| cd06189 | 224 | flavin_oxioreductase NAD(P)H dependent flavin oxid | 99.91 | |
| cd06211 | 238 | phenol_2-monooxygenase_like Phenol 2-monooxygenase | 99.91 | |
| PRK08051 | 232 | fre FMN reductase; Validated | 99.91 | |
| cd06190 | 232 | T4MO_e_transfer_like Toluene-4-monoxygenase electr | 99.91 | |
| PRK07609 | 339 | CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat | 99.91 | |
| PRK13289 | 399 | bifunctional nitric oxide dioxygenase/dihydropteri | 99.9 | |
| PRK05464 | 409 | Na(+)-translocating NADH-quinone reductase subunit | 99.9 | |
| cd06210 | 236 | MMO_FAD_NAD_binding Methane monooxygenase (MMO) re | 99.9 | |
| cd06209 | 228 | BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD | 99.9 | |
| cd06191 | 231 | FNR_iron_sulfur_binding Iron-sulfur binding Ferred | 99.9 | |
| TIGR01941 | 405 | nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo | 99.9 | |
| cd06195 | 241 | FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c | 99.9 | |
| PRK11872 | 340 | antC anthranilate dioxygenase reductase; Provision | 99.9 | |
| cd06187 | 224 | O2ase_reductase_like The oxygenase reductase FAD/N | 99.9 | |
| cd06212 | 232 | monooxygenase_like The oxygenase reductase FAD/NAD | 99.9 | |
| PRK10684 | 332 | HCP oxidoreductase, NADH-dependent; Provisional | 99.9 | |
| PRK08345 | 289 | cytochrome-c3 hydrogenase subunit gamma; Provision | 99.89 | |
| cd06194 | 222 | FNR_N-term_Iron_sulfur_binding Iron-sulfur binding | 99.89 | |
| PRK06703 | 151 | flavodoxin; Provisional | 99.89 | |
| PRK05713 | 312 | hypothetical protein; Provisional | 99.88 | |
| cd06213 | 227 | oxygenase_e_transfer_subunit The oxygenase reducta | 99.88 | |
| cd06184 | 247 | flavohem_like_fad_nad_binding FAD_NAD(P)H binding | 99.88 | |
| cd06215 | 231 | FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr | 99.88 | |
| PRK12359 | 172 | flavodoxin FldB; Provisional | 99.88 | |
| cd06221 | 253 | sulfite_reductase_like Anaerobic sulfite reductase | 99.88 | |
| cd06216 | 243 | FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr | 99.88 | |
| cd06196 | 218 | FNR_like_1 Ferredoxin reductase-like proteins cata | 99.87 | |
| TIGR02160 | 352 | PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, | 99.87 | |
| cd06217 | 235 | FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr | 99.87 | |
| cd06214 | 241 | PA_degradation_oxidoreductase_like NAD(P) binding | 99.87 | |
| PTZ00274 | 325 | cytochrome b5 reductase; Provisional | 99.86 | |
| cd06198 | 216 | FNR_like_3 NAD(P) binding domain of ferredoxin red | 99.86 | |
| PRK08221 | 263 | anaerobic sulfite reductase subunit B; Provisional | 99.86 | |
| cd06218 | 246 | DHOD_e_trans FAD/NAD binding domain in the electro | 99.86 | |
| KOG1160 | 601 | consensus Fe-S oxidoreductase [Energy production a | 99.86 | |
| cd06183 | 234 | cyt_b5_reduct_like Cytochrome b5 reductase catalyz | 99.86 | |
| COG1018 | 266 | Hmp Flavodoxin reductases (ferredoxin-NADPH reduct | 99.86 | |
| TIGR02911 | 261 | sulfite_red_B sulfite reductase, subunit B. Member | 99.85 | |
| PTZ00319 | 300 | NADH-cytochrome B5 reductase; Provisional | 99.85 | |
| PRK09271 | 160 | flavodoxin; Provisional | 99.84 | |
| cd06185 | 211 | PDR_like Phthalate dioxygenase reductase (PDR) is | 99.84 | |
| PRK06756 | 148 | flavodoxin; Provisional | 99.84 | |
| cd06197 | 220 | FNR_like_2 FAD/NAD(P) binding domain of ferredoxin | 99.83 | |
| TIGR01752 | 167 | flav_long flavodoxin, long chain. Flavodoxins are | 99.83 | |
| PRK00054 | 250 | dihydroorotate dehydrogenase electron transfer sub | 99.83 | |
| TIGR01754 | 140 | flav_RNR ribonucleotide reductase-associated flavo | 99.82 | |
| COG0543 | 252 | UbiB 2-polyprenylphenol hydroxylase and related fl | 99.82 | |
| TIGR01753 | 140 | flav_short flavodoxin, short chain. Flavodoxins ar | 99.81 | |
| cd06220 | 233 | DHOD_e_trans_like2 FAD/NAD binding domain in the e | 99.81 | |
| PRK06222 | 281 | ferredoxin-NADP(+) reductase subunit alpha; Review | 99.81 | |
| cd06192 | 243 | DHOD_e_trans_like FAD/NAD binding domain (electron | 99.81 | |
| COG2871 | 410 | NqrF Na+-transporting NADH:ubiquinone oxidoreducta | 99.81 | |
| cd06219 | 248 | DHOD_e_trans_like1 FAD/NAD binding domain in the e | 99.8 | |
| PRK05802 | 320 | hypothetical protein; Provisional | 99.79 | |
| PLN02252 | 888 | nitrate reductase [NADPH] | 99.79 | |
| COG4097 | 438 | Predicted ferric reductase [Inorganic ion transpor | 99.79 | |
| COG0716 | 151 | FldA Flavodoxins [Energy production and conversion | 99.77 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 99.77 | |
| KOG0534 | 286 | consensus NADH-cytochrome b-5 reductase [Coenzyme | 99.77 | |
| PRK09267 | 169 | flavodoxin FldA; Validated | 99.76 | |
| PF00175 | 109 | NAD_binding_1: Oxidoreductase NAD-binding domain ; | 99.72 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.7 | |
| cd06186 | 210 | NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz | 99.69 | |
| cd06193 | 235 | siderophore_interacting Siderophore interacting pr | 99.68 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.66 | |
| TIGR00333 | 125 | nrdI ribonucleoside-diphosphate reductase 2, opero | 99.62 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.59 | |
| PRK11921 | 394 | metallo-beta-lactamase/flavodoxin domain-containin | 99.58 | |
| PRK02551 | 154 | flavoprotein NrdI; Provisional | 99.57 | |
| PRK05452 | 479 | anaerobic nitric oxide reductase flavorubredoxin; | 99.56 | |
| PRK05569 | 141 | flavodoxin; Provisional | 99.53 | |
| PRK05568 | 142 | flavodoxin; Provisional | 99.51 | |
| PRK03600 | 134 | nrdI ribonucleotide reductase stimulatory protein; | 99.48 | |
| PLN02292 | 702 | ferric-chelate reductase | 99.41 | |
| PLN02844 | 722 | oxidoreductase/ferric-chelate reductase | 99.4 | |
| PLN02631 | 699 | ferric-chelate reductase | 99.37 | |
| PRK06242 | 150 | flavodoxin; Provisional | 99.27 | |
| PRK03767 | 200 | NAD(P)H:quinone oxidoreductase; Provisional | 99.12 | |
| TIGR01755 | 197 | flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. | 99.11 | |
| PRK11104 | 177 | hemG protoporphyrinogen oxidase; Provisional | 99.07 | |
| PRK07116 | 160 | flavodoxin; Provisional | 99.06 | |
| COG0426 | 388 | FpaA Uncharacterized flavoproteins [Energy product | 99.02 | |
| PF07972 | 122 | Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: | 98.96 | |
| KOG3378 | 385 | consensus Globins and related hemoproteins [Energy | 98.89 | |
| PF12724 | 143 | Flavodoxin_5: Flavodoxin domain | 98.79 | |
| COG1780 | 141 | NrdI Protein involved in ribonucleotide reduction | 98.75 | |
| PF08030 | 156 | NAD_binding_6: Ferric reductase NAD binding domain | 98.72 | |
| PF03358 | 152 | FMN_red: NADPH-dependent FMN reductase; InterPro: | 98.62 | |
| PF12641 | 160 | Flavodoxin_3: Flavodoxin domain | 98.54 | |
| COG4635 | 175 | HemG Flavodoxin [Energy production and conversion | 98.4 | |
| PF12682 | 156 | Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A. | 98.35 | |
| KOG0039 | 646 | consensus Ferric reductase, NADH/NADPH oxidase and | 98.26 | |
| PRK10569 | 191 | NAD(P)H-dependent FMN reductase; Provisional | 98.15 | |
| PRK06934 | 221 | flavodoxin; Provisional | 98.07 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 98.0 | |
| TIGR03567 | 171 | FMN_reduc_SsuE FMN reductase, SsuE family. Members | 97.94 | |
| PRK00170 | 201 | azoreductase; Reviewed | 97.9 | |
| PRK09739 | 199 | hypothetical protein; Provisional | 97.9 | |
| PRK01355 | 199 | azoreductase; Reviewed | 97.88 | |
| TIGR03566 | 174 | FMN_reduc_MsuE FMN reductase, MsuE subfamily. Memb | 97.82 | |
| PF02525 | 199 | Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR0 | 97.66 | |
| PRK13556 | 208 | azoreductase; Provisional | 97.53 | |
| PF00970 | 99 | FAD_binding_6: Oxidoreductase FAD-binding domain; | 97.41 | |
| COG0655 | 207 | WrbA Multimeric flavodoxin WrbA [General function | 97.22 | |
| PRK04930 | 184 | glutathione-regulated potassium-efflux system anci | 96.75 | |
| TIGR02690 | 219 | resist_ArsH arsenical resistance protein ArsH. Mem | 96.54 | |
| PRK13555 | 208 | azoreductase; Provisional | 96.33 | |
| COG0431 | 184 | Predicted flavoprotein [General function predictio | 94.85 | |
| COG2375 | 265 | ViuB Siderophore-interacting protein [Inorganic io | 94.7 | |
| PRK00871 | 176 | glutathione-regulated potassium-efflux system anci | 94.33 | |
| KOG3135 | 203 | consensus 1,4-benzoquinone reductase-like; Trp rep | 93.44 | |
| COG2249 | 189 | MdaB Putative NADPH-quinone reductase (modulator o | 90.19 | |
| cd06182 | 267 | CYPOR_like NADPH cytochrome p450 reductase (CYPOR) | 87.87 | |
| KOG1160 | 601 | consensus Fe-S oxidoreductase [Energy production a | 85.52 | |
| KOG0560 | 638 | consensus Sulfite reductase (ferredoxin) [Inorgani | 85.15 |
| >KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-113 Score=903.98 Aligned_cols=567 Identities=34% Similarity=0.599 Sum_probs=494.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
++++|+||||||||+.+|+.|.+++.+++ ..+.|+.+|+|++ ++|.+..++||+|||+|+|++|+||+.||+
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~~--~~~~V~s~Deyd~------~~ll~~~~vvFVcSTTGqGe~P~Nmk~~Wr 72 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRRG--LQCLVMSMDEYDV------EKLLDERLVVFVCSTTGQGEEPDNMKKFWR 72 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhcc--CCceEeeccccCH------hHhccCceEEEEEecCCCCCCCccHHHHHH
Confidence 47899999999999999999999999887 4467899999995 678999999999999999999999999999
Q ss_pred HHH-hccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHHHh
Q 005109 185 WFT-EKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 185 ~L~-~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~ 261 (714)
+|. ++.+...|++++|||||||||+|+.||.++|+++++|.+|||+.++++|+|||+. +++.+|..|+..+|..|..
T Consensus 73 fL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~ 152 (574)
T KOG1159|consen 73 FLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKG 152 (574)
T ss_pred HHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 998 5566778999999999999999999999999999999999999999999999965 7999999999999999998
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCcc--ccCCCCeeeEEeeeecccCCCCCCceeEEEE
Q 005109 262 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAV--YDAQHPCRSNVAVRKELHTPSSDRSCTHLEF 339 (714)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~ 339 (714)
+............+ ....+.|++-....... . ..+..+ ...+-| ++++.|+++|+.++.++++|++|
T Consensus 153 i~~p~~~~t~l~~~-~~~~~k~~~l~~~~~~~------~--~d~~~v~~~~~~~~--~k~~~N~rlT~~~HfQDVR~~~F 221 (574)
T KOG1159|consen 153 IYPPYRPETDLIPT-VQITTKYSLLELGKASD------F--SDSDIVLEPQGQIP--AKLVENRRLTSADHFQDVRLFEF 221 (574)
T ss_pred hcCCCCCcccCCCc-ccccchhhhhhcccccc------C--Ccchhhhccccccc--cchhcceeecCcchhheeeEEEE
Confidence 87511110001111 11223344332222110 0 001111 111222 78999999999999999999999
Q ss_pred EecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCC-cchHHHHHHhcccccC
Q 005109 340 DIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLS 418 (714)
Q Consensus 340 di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~p-p~tl~~~l~~~~Dl~~ 418 (714)
+|.++.+.|+|||++.|+|.|+++.|++++..+||++++...+.....+. .+..+-+| |+|+++++.+|+|+++
T Consensus 222 ~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~-----~~~~~~~~~p~sl~~~lk~~~D~~S 296 (574)
T KOG1159|consen 222 DIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDR-----SSPLPLLPNPLSLLNLLKYVLDFNS 296 (574)
T ss_pred ecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCcc-----cccccccCCchhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999998877665433221 12222578 9999999999999999
Q ss_pred CccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCC
Q 005109 419 SPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISS 498 (714)
Q Consensus 419 ~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsS 498 (714)
.|++.||..|++|++|+.|||+|++++|++|.|+|.+|+.+++||++|+|++|++.+.|++++++. +|.++||+|||||
T Consensus 297 vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~-~P~IrPR~fSIas 375 (574)
T KOG1159|consen 297 VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDL-LPVIRPRAFSIAS 375 (574)
T ss_pred CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHh-ccccccceeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999985 5999999999999
Q ss_pred CCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEEEecCCcchhH
Q 005109 499 SPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPF 578 (714)
Q Consensus 499 sp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piImIa~GTGIAPf 578 (714)
+|..+ .++++|++|.++|.....+.|+||+||+++.+|+ .+++.+++|++.+|.+..+|+||||+|||||||
T Consensus 376 ~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~------~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPf 447 (574)
T KOG1159|consen 376 SPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKPGD------EIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPF 447 (574)
T ss_pred CCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCCCC------eEEEEEecCccccCCCCCCCeEEEcCCCCcccH
Confidence 99854 4999999999999999999999999999999987 589999999999999889999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcc
Q 005109 579 RGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML 658 (714)
Q Consensus 579 rs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i 658 (714)
||++++|..++. .+..||||||++++||+|.+||.+..+.+. +.|||||+++|.||||+|++.++.+|+++
T Consensus 448 Ra~i~er~~q~~-----~~~~lFfGCR~K~~Df~y~~eW~~~~~~~~----~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll 518 (574)
T KOG1159|consen 448 RALIQERIYQGD-----KENVLFFGCRNKDKDFLYEDEWTELNKRAF----HTAFSRDQEQKVYVQHKIRENGEEVWDLL 518 (574)
T ss_pred HHHHHHHHhhcc-----CCceEEEecccCCccccccchhhhhhcchh----hhhcccccccceeHHHHHHHhhHHHHHHH
Confidence 999999997553 456999999999999999999999877653 45999999999999999999999999998
Q ss_pred -cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 659 -SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 659 -~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
+.||+|||||++..|.++|..+|.+|+.+.++.+.+.|. |++.|++++||+.|+|
T Consensus 519 ~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 519 DNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred hccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 589999999999999999999999999999999777776 9999999999999999
|
|
| >KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-110 Score=938.76 Aligned_cols=597 Identities=47% Similarity=0.786 Sum_probs=512.3
Q ss_pred ccccCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCch
Q 005109 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDN 178 (714)
Q Consensus 99 ~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdn 178 (714)
.....+.+++|+|||||||||.+|+.+.+++ +++....+++.|.+.++.+ ....+++|+.+|||+|+||||
T Consensus 41 ~~~~~~~~~~v~~~s~tgtae~~a~~l~~~~-~~~~~~~~~~~d~~~~~l~--------~~~~l~~~~~at~g~gd~~dn 111 (645)
T KOG1158|consen 41 KVKAKRVKATVLYGSQTGTAEDFAKRLSEIF-ARFELKVLKVADYDLYALE--------DHEKLLVVVLATYGEGDPPDN 111 (645)
T ss_pred HhhccceeEEEEeccCCCCHHHHHHHHHHHh-hhccccceeecchhhcccc--------cccceeeeeeehhcCCCCCcc
Confidence 3456778999999999999999999999999 7775444556666666532 456899999999999999999
Q ss_pred HHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHH
Q 005109 179 AARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPE 258 (714)
Q Consensus 179 a~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~ 258 (714)
++.|.+||.... ......++|+|||+||++|+|||++|+.+|++|.++||+|++.+|+||++.+.|++|..|++.+|++
T Consensus 112 ~~~f~~~l~~~~-~~~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w~~~~~~~ 190 (645)
T KOG1158|consen 112 AEAFYQSLTELK-VLPSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTWKKPLLPE 190 (645)
T ss_pred HHHHHHHHhhcc-CchhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccccchhHHHHHHHHHhHh
Confidence 999999998221 2234558999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCCCCCCCCccccccceEEEEecC-CCcccCcc-ccCCCCCCccccCCCCeeeEEeeeecccCCCCCCceeE
Q 005109 259 LDNLLRDDDDPTTVSTPYTAAISEYRVVFYDN-ADASVGEK-SWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTH 336 (714)
Q Consensus 259 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~h 336 (714)
+++.+..++.. .++.......++...... ........ .....+...+++..+|+.+.++.+++|+++.++|+|+|
T Consensus 191 ~~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~ 267 (645)
T KOG1158|consen 191 LCETFSLEEDE---ATKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPSSDRSCIH 267 (645)
T ss_pred hhheeeecccc---ccCCcccccccccCcCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCCCceEEEE
Confidence 99887644221 111111111111111100 00000000 00011223567889999999999999999899999999
Q ss_pred EEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCC-cchHHHHHHhccc
Q 005109 337 LEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYAD 415 (714)
Q Consensus 337 le~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~p-p~tl~~~l~~~~D 415 (714)
+++++.+.+++|+||||++|+|.|..+.|++++++|+++++..+.++....+++.......+.||| |||++++|+||+|
T Consensus 268 ~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~~~~l~~~ld 347 (645)
T KOG1158|consen 268 LELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTLRTALTHYLD 347 (645)
T ss_pred EEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcHHHHHHHhcc
Confidence 999999999999999999999999999999999999999988887776554322112245788999 9999999999999
Q ss_pred ccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccc
Q 005109 416 LLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYS 495 (714)
Q Consensus 416 l~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YS 495 (714)
|+++|+|++|+.||+||+|+.||++|+.|+|++|+.+|..|+....++++|||.+||+++||+.++++. +|+++||+||
T Consensus 348 i~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~-lp~L~pR~YS 426 (645)
T KOG1158|consen 348 ITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLEL-LPRLQPRYYS 426 (645)
T ss_pred ccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHh-Cccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999888875 6999999999
Q ss_pred cCCCCCCCCCeEEEEEEEEEecCCCC-ccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEEEecCCc
Q 005109 496 ISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTG 574 (714)
Q Consensus 496 IsSsp~~~~~~i~ltv~~v~~~~~~g-r~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piImIa~GTG 574 (714)
|||||..+++++|+++.++.+.++.| +.+.|+||+||.++.+++.+. .++.++.+.|+||.|+.+||||||+|||
T Consensus 427 IssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~----~~~~~~~s~frlp~dp~~PiIMIGpGTG 502 (645)
T KOG1158|consen 427 ISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVP----NPVPVGKSMFRLPSDPSTPIIMIGPGTG 502 (645)
T ss_pred cccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccC----cceeecccceecCCCCCCcEEEEcCCCc
Confidence 99999999999999999998888775 778899999999999987632 1477788999999999999999999999
Q ss_pred chhHHHHHHHHHHhhhcCC--CCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCC-CCcccccchhhhch
Q 005109 575 LAPFRGFLQERFALQEAGA--ELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG-PTKEYVQHKMMEKS 651 (714)
Q Consensus 575 IAPfrs~lq~~~~~~~~~~--~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~-~~k~yVq~~l~e~~ 651 (714)
|||||||+|+|..+++.+. ..+ +|||||||+++.||||++||+++.+.+.++++.+||||++ +.|.||||+|++++
T Consensus 503 iAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~YVQd~l~e~~ 581 (645)
T KOG1158|consen 503 IAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIYVQDRLREYA 581 (645)
T ss_pred chhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCceehhhHHHHHH
Confidence 9999999999999876542 234 8999999999999999999999999999999999999998 78999999999999
Q ss_pred HHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 652 SDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 652 ~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++||++| .++++|||||++++|+++|.++|.+|+++.++++.++|++++++|++++||++|||
T Consensus 582 d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 582 DEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred HHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 9999998 56999999999777999999999999999999999999999999999999999999
|
|
| >PRK10953 cysJ sulfite reductase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-106 Score=922.95 Aligned_cols=539 Identities=29% Similarity=0.508 Sum_probs=468.4
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
.+++|+|+|||||||||.+|++|++.+.+.| ..++++++++|+. .+|.+++.+||++||||+|+|||||..|
T Consensus 60 ~~~~v~IlygSqTGnae~lA~~la~~l~~~g--~~~~v~~~~d~~~------~~L~~~~~vl~v~ST~G~Ge~Pdna~~F 131 (600)
T PRK10953 60 EMPGITLISASQTGNARRVAEQLRDDLLAAK--LNVNLVNAGDYKF------KQIAQEKLLIVVTSTQGEGEPPEEAVAL 131 (600)
T ss_pred CCCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CCcEEechHhCCH------hHhccCCeEEEEECCCCCCCCChhHHHH
Confidence 4788999999999999999999999998876 5578999999985 4688899999999999999999999999
Q ss_pred HHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhh
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 262 (714)
|+||.... ...|.+++||||||||++|++||.++|.+|++|+++||+|+++++.+| .+.+++|+.|++++|++|...
T Consensus 132 ~~~L~~~~-~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D--~~~e~~~~~W~~~~~~~l~~~ 208 (600)
T PRK10953 132 HKFLFSKK-APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDAD--VEYQAAASEWRARVVDALKSR 208 (600)
T ss_pred HHHHhhCc-CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeecccccc--cccHHHHHHHHHHHHHHHHhh
Confidence 99997322 346999999999999999999999999999999999999999998655 457999999999999999876
Q ss_pred hCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEec
Q 005109 263 LRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 342 (714)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~ 342 (714)
+.... ...... . . .... ......++..+|+.|+|+.|++|+.++++++|+||||||+
T Consensus 209 ~~~~~----~~~~~~---~--~----~~~~----------~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~ 265 (600)
T PRK10953 209 APAVA----APSQSV---A--T----GAVN----------EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDLG 265 (600)
T ss_pred cCCcc----cccccc---c--c----cccc----------ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEecC
Confidence 53110 000000 0 0 0000 0001245678999999999999999999999999999999
Q ss_pred CCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccH
Q 005109 343 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK 422 (714)
Q Consensus 343 ~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k 422 (714)
+++++|+|||||+|||+|+++.|+++|++||+++++.+.+. + .++|++++|++|+||+.+ ++
T Consensus 266 ~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~~-~~ 327 (600)
T PRK10953 266 DSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVD-----G------------KTLPLAEALQWHFELTVN-TA 327 (600)
T ss_pred CCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeC-----C------------CCCCHHHHHHHhcccCCC-cH
Confidence 99999999999999999999999999999999999987664 1 156999999999999876 67
Q ss_pred HHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC
Q 005109 423 SALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV 502 (714)
Q Consensus 423 ~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~ 502 (714)
.+|+.+++++.+++ |+.|. ++++.+.+|+. +++++|||++|| .+++++||++. +|+++||+|||||+|..
T Consensus 328 ~~l~~~a~~~~~~~----l~~~~--~~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~l-l~~l~pR~YSIaSsp~~ 397 (600)
T PRK10953 328 NIVENYATLTRSET----LLPLV--GDKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIGL-LRPLTPRLYSIASSQAE 397 (600)
T ss_pred HHHHHHHHhCCCHH----HHHHh--cCHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHHh-CCCCCCeeeecccCCCC
Confidence 89999999998754 44443 25667777764 699999999998 68999999975 58999999999999987
Q ss_pred CCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEec-CCccCCCCCCCCeEEEecCCcchhHHH
Q 005109 503 APSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRG 580 (714)
Q Consensus 503 ~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~-~~F~lp~~~~~piImIa~GTGIAPfrs 580 (714)
.+++++|+|++|.+. ..|+.+.|+||+||.+ +.+|+ .++|+++. +.|++|.++.+|+||||+|||||||||
T Consensus 398 ~~~~v~ltv~~v~~~-~~g~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrs 470 (600)
T PRK10953 398 VENEVHITVGVVRYD-IEGRARAGGASSFLADRLEEEG------EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRA 470 (600)
T ss_pred CCCeEEEEEEEEEee-cCCCCcCceEhhhhhhcCCCCC------EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHH
Confidence 789999999988765 3578889999999986 55554 68888875 589999888899999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccC
Q 005109 581 FLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE 660 (714)
Q Consensus 581 ~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~ 660 (714)
|+|++...+. .+++|||||||++..||+|++||++|.+.|.+++++++|||++.+|+||||+|.++++++|+++.+
T Consensus 471 flq~r~~~~~----~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~~ 546 (600)
T PRK10953 471 FMQQRAADGA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWIND 546 (600)
T ss_pred HHHHHHHcCC----CCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHC
Confidence 9999987543 378999999999777999999999999999999999999999988999999999999999999988
Q ss_pred CcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 661 GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 661 ~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
+++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 547 ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 547 GAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred CcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999999999778999999999999999999999999999999999999999999
|
|
| >TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-103 Score=906.33 Aligned_cols=538 Identities=35% Similarity=0.610 Sum_probs=469.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
.++|+|+|||||||||.+|+.|++++.++| ..+++.++++|+. .++.+++.+||++||||+|+||+||..|+
T Consensus 58 ~~~i~IlygSqTGnae~~A~~l~~~l~~~g--~~~~v~~~~d~~~------~~l~~~~~li~v~ST~GeGe~Pdna~~F~ 129 (597)
T TIGR01931 58 EKRVTILYGSQTGNARRLAKRLAEKLEAAG--FSVRLSSADDYKF------KQLKKERLLLLVISTQGEGEPPEEAISFH 129 (597)
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHhCC--CccEEechHHCCH------hhcccCceEEEEeCCCCCCcCCHHHHHHH
Confidence 678999999999999999999999999876 5578999999985 45888999999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
+||.... ...|++++||||||||++|++||.++|.+|++|+++||+|++|++.+|. +.+++|++|.+++|+.|...+
T Consensus 130 ~~L~~~~-~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~~~ 206 (597)
T TIGR01931 130 KFLHSKK-APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNEQA 206 (597)
T ss_pred HHHHhCC-CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHhhc
Confidence 9997322 3469999999999999999999999999999999999999999987765 578999999999999998654
Q ss_pred CCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEecC
Q 005109 264 RDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAG 343 (714)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~ 343 (714)
... ... +.+.+. .... ......|+..+|+.++|+.|++|+..+++++|+||||||++
T Consensus 207 ~~~-----~~~------~~~~~~--~~~~----------~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~~ 263 (597)
T TIGR01931 207 KGS-----AST------PSLSET--PARS----------QTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLEG 263 (597)
T ss_pred cCc-----cCC------Ccceec--cccc----------ccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEecCC
Confidence 211 001 111110 0000 01123456789999999999999999999999999999999
Q ss_pred CCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHH
Q 005109 344 TGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKS 423 (714)
Q Consensus 344 ~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~ 423 (714)
++++|+|||||+|||+|+++.|+++|++||+++++.+++. + +++|++++|++|+||+. ++|.
T Consensus 264 ~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~-~~~~ 325 (597)
T TIGR01931 264 SGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----G------------KTIPLFEALITHFELTQ-NTKP 325 (597)
T ss_pred CCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----C------------CCcCHHHHHHhceeCCC-CCHH
Confidence 9999999999999999999999999999999999987663 1 15799999999999998 5799
Q ss_pred HHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCC
Q 005109 424 ALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA 503 (714)
Q Consensus 424 ~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~ 503 (714)
+|+.||++++|++.++ +.+ +++.|.+|+. +++++|+|.+|| +++++|||+++ +|+++||+|||||+|...
T Consensus 326 ~l~~la~~~~~~~l~~----~~~--~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~l-l~~~~~R~YSIaSsp~~~ 395 (597)
T TIGR01931 326 LLKAYAELTGNKELKA----LIA--DNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISL-LRPLTPRLYSISSSQSEV 395 (597)
T ss_pred HHHHHHHhcCCHHHHH----Hhc--CHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHh-CcccCCceeeeccCcccC
Confidence 9999999999986544 332 5778888885 789999999999 89999999975 588999999999999877
Q ss_pred CCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEec-CCccCCCCCCCCeEEEecCCcchhHHHH
Q 005109 504 PSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGF 581 (714)
Q Consensus 504 ~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~-~~F~lp~~~~~piImIa~GTGIAPfrs~ 581 (714)
+++++|+|++|.+. ..|+.+.|.||+||.+ +.+|+ .++|+++. +.|++|.++.+|+||||+||||||||||
T Consensus 396 ~~~l~ltV~~v~~~-~~~~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsf 468 (597)
T TIGR01931 396 GDEVHLTVGVVRYQ-AHGRARLGGASGFLAERLKEGD------TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAF 468 (597)
T ss_pred CCEEEEEEEEEEec-CCCCccccchhHHHHhhCCCCC------EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHH
Confidence 88999999988664 4678899999999998 66654 58888864 5799998888999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccCC
Q 005109 582 LQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEG 661 (714)
Q Consensus 582 lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~ 661 (714)
+|++...+. .++++||||||+...|++|++||++|.+.+.+++++++|||++..|+||||+|.++..++++++.++
T Consensus 469 lq~r~~~~~----~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~~ 544 (597)
T TIGR01931 469 MQERAEDGA----KGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQEG 544 (597)
T ss_pred HHHHHHccC----CCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhCC
Confidence 999987643 2789999999996569999999999999999989999999987789999999999999999988788
Q ss_pred cEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 662 AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 662 ~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++|||||+++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 545 a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 545 AHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred cEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 99999995489999999999999999999999999999999999999999999
|
This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase. |
| >COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-100 Score=862.12 Aligned_cols=541 Identities=38% Similarity=0.663 Sum_probs=482.6
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
...+++|+||||||||+.+|+.+++++.+.| ..+.+.++++|+.. ++.....++|++||+|+|+||+||..|
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~~g--~~~~~~~~~~~~~~------~~~~~~~~~~i~st~geGe~p~na~~f 117 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEAAG--LQVLVASLDDYKPK------DIAEERLLLFVVSTQGEGEPPDNAVAF 117 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHhcC--CceeecchhhcChh------hHHhhhceEEEEccccCCCCCCchHHH
Confidence 5788999999999999999999999999887 56789999999963 344447899999999999999999999
Q ss_pred HHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhh
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 262 (714)
+++|... +...|.+++|+||||||++|+.||.++|.++++|.++||+++.+++++|+. +++++...|...+++.+...
T Consensus 118 ~~~l~~~-~a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~~ 195 (587)
T COG0369 118 HEFLKGK-KAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKSK 195 (587)
T ss_pred HHHhccc-ccccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHhh
Confidence 9999832 346799999999999999999999999999999999999999999999876 78999999999999999876
Q ss_pred hCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEec
Q 005109 263 LRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 342 (714)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~ 342 (714)
....... ...++. .+. . ...+....++.+.+..|++|+...++|+|+|++||++
T Consensus 196 ~~~~~~~--~~~~~~--~~~---------------------~-~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l~ 249 (587)
T COG0369 196 FPGQEAA--PAQVAT--SPQ---------------------S-ESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDLP 249 (587)
T ss_pred ccccccc--cccccc--hhc---------------------c-cccccccCcceeEeeccccCCccccCceeEEEEeecc
Confidence 6422110 000100 000 0 1223345677899999999999999999999999999
Q ss_pred CCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccH
Q 005109 343 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKK 422 (714)
Q Consensus 343 ~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k 422 (714)
+++++|+|||+|+|||+|+++.|+++|..||+++++.++++ + .+.++.++|.+|+|+++.| |
T Consensus 250 ~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-----~------------~~~~~~~~l~~~~e~~~~~-~ 311 (587)
T COG0369 250 DSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-----G------------ETLPLVEALKSHFEFTSAP-K 311 (587)
T ss_pred cccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----C------------CcchHHHHHHHheecccch-H
Confidence 99999999999999999999999999999999998666332 1 1679999999999999999 9
Q ss_pred HHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC
Q 005109 423 SALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV 502 (714)
Q Consensus 423 ~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~ 502 (714)
+++..|+.|+.+++.++.|+.++ ...|..|.. +++++|+|++||++++|++++++. +|++.||+|||||+|..
T Consensus 312 ~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~~-l~~lkPR~YSIsSs~~~ 384 (587)
T COG0369 312 SLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEELIDL-LPPLKPRLYSIASSPGV 384 (587)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHHHHHh-CccCCCeeeEeccCCCC
Confidence 99999999999999999999886 455666664 899999999999999999999975 59999999999999999
Q ss_pred CCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecC-CccCCCCCCCCeEEEecCCcchhHHHH
Q 005109 503 APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGF 581 (714)
Q Consensus 503 ~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~-~F~lp~~~~~piImIa~GTGIAPfrs~ 581 (714)
++++||+||.+|.+.+. ++.+.|+||+||+++...++ .++++++.+ +|++|.++.+||||||+||||||||||
T Consensus 385 ~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g~-----~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRaf 458 (587)
T COG0369 385 SPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEGD-----TIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAF 458 (587)
T ss_pred CCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCCC-----eEEEEeccCCccccCCCCCCceEEEcCCCCchhHHHH
Confidence 99999999999988777 56899999999999988443 689999876 899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccCC
Q 005109 582 LQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEG 661 (714)
Q Consensus 582 lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~ 661 (714)
+|+|...+.. |++|||||||+.+.||+|++||++|.+.|.++++.+|||||+.+|.||||+|+++++.||+++.++
T Consensus 459 vq~r~~~~~~----gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~g 534 (587)
T COG0369 459 VQERAANGAE----GKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEEG 534 (587)
T ss_pred HHHHHhcccc----CceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHHhHHHHHHHHHCC
Confidence 9999987754 689999999998889999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 662 AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 662 ~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++|||||+++.|+++|+++|.+|+.+.++++.++|++++++|++++||++|||
T Consensus 535 a~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 535 AHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 99999997799999999999999999999999999999999999999999999
|
|
| >cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-78 Score=673.10 Aligned_cols=395 Identities=53% Similarity=0.934 Sum_probs=357.0
Q ss_pred CCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCC-CCcEEEEeeCCCCC
Q 005109 311 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS-PDTYFSLHTDKEDG 389 (714)
Q Consensus 311 ~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~-~d~~~~i~~~~~~~ 389 (714)
..+|+.|+|+.+++|+.+ ++|+++||+||+++++++|+|||||+|+|+|+++.|+++|++||++ +++.+.+.....
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~-- 78 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDE-- 78 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCc--
Confidence 357899999999999988 9999999999999889999999999999999999999999999999 899988874332
Q ss_pred CCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 005109 390 TPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 468 (714)
Q Consensus 390 ~~~~~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl 468 (714)
....+.|+| |||++++|++|+||+++|++.+|+.||.||+|+++|++|.+|++ +|+++|.+|+...+++++|+|
T Consensus 79 ----~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL 153 (416)
T cd06204 79 ----PASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVL 153 (416)
T ss_pred ----ccccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHH
Confidence 123456899 99999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhCCCCC---CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCC-----
Q 005109 469 SEFPSAK---PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK----- 540 (714)
Q Consensus 469 ~~fps~~---~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~----- 540 (714)
.+||+++ +|++.|++. +|+++||+|||||+|..++++|+|||+++.+.++.++.+.|+||+||+++.++..
T Consensus 154 ~~f~s~~~~~~pl~~ll~~-lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~ 232 (416)
T cd06204 154 QDFPSAKPTPPPFDFLIEL-LPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPP 232 (416)
T ss_pred HhCcccCCCCCCHHHHHHh-CccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccc
Confidence 9999999 999999975 5999999999999998788999999999988888889999999999999874110
Q ss_pred ----------CCCCceeeEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcc
Q 005109 541 ----------SNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD 610 (714)
Q Consensus 541 ----------~~~~~~v~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D 610 (714)
...++.++++++.|.|.+|.++.+|+||||+||||||||||++++....+.+...++++||||||+++.|
T Consensus 233 ~~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d 312 (416)
T cd06204 233 TPYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDED 312 (416)
T ss_pred cccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcc
Confidence 0012368899999999999887899999999999999999999987654333335799999999998559
Q ss_pred cchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCC
Q 005109 611 YIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 690 (714)
Q Consensus 611 ~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~ 690 (714)
++|++||++|.+.+.+++++++|||++..++|||++|.++.+.+++++.++++||+|||+..|+++|.++|.+|++++++
T Consensus 313 ~ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~ 392 (416)
T cd06204 313 FIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGG 392 (416)
T ss_pred cchHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHHhCC
Confidence 99999999999988888999999998878999999999988888888877899999999434999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCeEEecC
Q 005109 691 LDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 691 ~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++.++|++|+++|+++|||++|||
T Consensus 393 ~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 393 MTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred CCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo |
| >cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-77 Score=657.89 Aligned_cols=381 Identities=39% Similarity=0.709 Sum_probs=343.0
Q ss_pred EeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCC--CCcEEEEeeCCCCCCCCCCCC
Q 005109 319 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLGKST 396 (714)
Q Consensus 319 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~--~d~~~~i~~~~~~~~~~~~~~ 396 (714)
|..+++||++++.++++||+||+++++++|+|||||+|+|+|+++.|++++++||++ +|+.+.++.....+. .+.+
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK--KNAK 79 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc--cccc
Confidence 677899999999999999999998889999999999999999999999999999999 889888875222111 1235
Q ss_pred CCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCC
Q 005109 397 LPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAK 475 (714)
Q Consensus 397 ~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~ 475 (714)
++.+|| |+|++++|++|+||+++|+|++|+.||+||+|++||++|++|++.+|+++|.+|+.+.++|++|||++||+++
T Consensus 80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~ 159 (398)
T cd06203 80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCR 159 (398)
T ss_pred cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCC
Confidence 778899 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccC-----CCCCCCCCceeeEE
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-----PMEKSNDCSWAPIF 550 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~-----~g~~~~~~~~v~i~ 550 (714)
+|++.+++. +|+++||+|||||+|..++++++|+|+++.+.+ .|+||+||+++. +|+ .+.+.
T Consensus 160 ~pl~~ll~~-lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G~------~v~i~ 226 (398)
T cd06203 160 PPLSLLIEH-LPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHGV------KVPFY 226 (398)
T ss_pred CCHHHHHHh-CccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCCC------EEEEE
Confidence 999999975 599999999999999866799999998875422 699999999987 554 57888
Q ss_pred Ee-cCCccCCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhh--cCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCC
Q 005109 551 VR-QSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQE--AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 626 (714)
Q Consensus 551 v~-~~~F~lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~--~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~ 626 (714)
++ .|.|.+|.+ +.+|+||||+||||||||||+|++..... .+...++++||||||+++.|++|++||++|++.+.+
T Consensus 227 ~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~ 306 (398)
T cd06203 227 LRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL 306 (398)
T ss_pred EecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC
Confidence 85 567999876 67999999999999999999999976431 123358999999999995599999999999999999
Q ss_pred cEEEEEEecCCC---CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005109 627 SQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 702 (714)
Q Consensus 627 ~~l~~a~Sr~~~---~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~ 702 (714)
+++++||||++. .++||||+|.++.+.+++++ .++++||||||++.|+++|+++|.+|+++.++++.++|++|+++
T Consensus 307 ~~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~ 386 (398)
T cd06203 307 TRLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLAR 386 (398)
T ss_pred ceEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 899999999876 58999999999999999887 57899999999778999999999999999999999999999999
Q ss_pred HHHCCCeEEecC
Q 005109 703 LQMTGRYLRDVW 714 (714)
Q Consensus 703 l~~~gRy~~DvW 714 (714)
|+++|||++|||
T Consensus 387 l~~~gRy~~dvw 398 (398)
T cd06203 387 LRKEDRYLEDVW 398 (398)
T ss_pred HHHcCCeeeecC
Confidence 999999999999
|
In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme |
| >cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-76 Score=655.21 Aligned_cols=386 Identities=41% Similarity=0.738 Sum_probs=340.9
Q ss_pred EeeeecccCCCCCCceeEEEEEecC-CCCccCCCCeeEEeccCCHHHHHHHHHHhCC--CCCcEEEEeeCCCCCCCCC--
Q 005109 319 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGL--SPDTYFSLHTDKEDGTPLG-- 393 (714)
Q Consensus 319 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l--~~d~~~~i~~~~~~~~~~~-- 393 (714)
|+.+++|++++++|+|+||+||+++ ++++|+|||||+|+|+|+++.|+++|++||+ +.++.+.++.........+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 5678999999999999999999987 6999999999999999999999999999998 4577788775433211100
Q ss_pred CCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC
Q 005109 394 KSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP 472 (714)
Q Consensus 394 ~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fp 472 (714)
....++++| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|+.|++ +++.|.+|+...+++++|+|.+||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 012334565 99999999999999999999999999999999999999999996 889999999999999999999999
Q ss_pred CCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCC--CccccCccchhhcccCCCCCCCCCceeeEE
Q 005109 473 SAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 473 s~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~--gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~ 550 (714)
++++|++.|++. +|+++||+|||||+|..+++.++|+|+++.+.++. ++.+.|+||+||+++.+|+ .+.++
T Consensus 160 s~~~~~~~ll~~-lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLTQ-LPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGD------TVPCF 232 (406)
T ss_pred cCCCCHHHHHHh-CcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCC------EEEEE
Confidence 999999999975 59999999999999987789999999988765543 4567899999999988866 57788
Q ss_pred Eec-CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhh----hcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC
Q 005109 551 VRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ----EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 625 (714)
Q Consensus 551 v~~-~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~----~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~ 625 (714)
++. +.|.+|.++.+|+||||+||||||||||+|++.... ..+...++++||||||+++.|++|++||++|.+.+.
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~ 312 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV 312 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence 764 589999888899999999999999999999986542 122345899999999999559999999999999999
Q ss_pred CcEEEEEEecCCC-CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005109 626 LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNL 703 (714)
Q Consensus 626 ~~~l~~a~Sr~~~-~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l 703 (714)
++++++||||++. .++||||+|.++++.+++++ .++++|||||| +.|+++|+++|.+|+++.++++.++|++|+++|
T Consensus 313 ~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l 391 (406)
T cd06202 313 LTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILKL 391 (406)
T ss_pred CceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9899999999864 68999999999999999987 67999999999 689999999999999999999999999999999
Q ss_pred HHCCCeEEecC
Q 005109 704 QMTGRYLRDVW 714 (714)
Q Consensus 704 ~~~gRy~~DvW 714 (714)
+++|||++|||
T Consensus 392 ~~~gRy~~dvw 402 (406)
T cd06202 392 RDENRYHEDIF 402 (406)
T ss_pred HHcCCeEEEec
Confidence 99999999999
|
The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation. |
| >cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-77 Score=653.38 Aligned_cols=378 Identities=43% Similarity=0.785 Sum_probs=346.7
Q ss_pred EeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCC
Q 005109 319 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 398 (714)
Q Consensus 319 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~ 398 (714)
|+.+++|+.++++++|+||+|++++++++|+|||||+|+|+|+++.|++++++||+++++.+.++... ..+.+
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~-------~~~~~ 74 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNE-------QQRGK 74 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccc-------ccccC
Confidence 56789999999999999999999888999999999999999999999999999999999999887433 12346
Q ss_pred CCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 005109 399 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 477 (714)
Q Consensus 399 ~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p 477 (714)
.|+| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|..|++.++.+.|.++ .+++++|+|.+||++++|
T Consensus 75 ~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 75 PPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 6889 999999999999999999999999999999999999999999999999999888 789999999999999999
Q ss_pred hHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCcc
Q 005109 478 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 557 (714)
Q Consensus 478 ~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~ 557 (714)
++.|++. +|+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||.++.+|+ .+.+.++.|.|.
T Consensus 152 ~~~ll~~-lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~p~g~F~ 224 (382)
T cd06207 152 LEQLLEL-CPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQ------RVTVFIKKSSFK 224 (382)
T ss_pred HHHHHHh-CcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCC------EEEEEEECCccc
Confidence 9999985 599999999999999866789999999998888888889999999999987765 588999999999
Q ss_pred CCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCC
Q 005109 558 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 637 (714)
Q Consensus 558 lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~ 637 (714)
+|.+..+|+||||+||||||||||+|++......+...++++||||||+++.|++|++||++|.+.+.+++++++|||++
T Consensus 225 lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~ 304 (382)
T cd06207 225 LPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQ 304 (382)
T ss_pred CCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCC
Confidence 99887899999999999999999999998654333445899999999999559999999999999999889999999998
Q ss_pred CCcccccchhhhchHHHHhcccCC-cEEEEecCchh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 638 PTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 638 ~~k~yVq~~l~e~~~~l~~~i~~~-~~iyvCGpa~~-M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
..++||||++.++.+.+++++.++ ++|||||| +. |+++|+++|.+++++.+++++++|++|+++|+++|||++|||
T Consensus 305 ~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~-~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 305 PKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGS-TWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCceEhHHHHHHCHHHHHHHHhcCCCEEEEECC-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 889999999999888888887555 49999999 55 999999999999999999999999999999999999999999
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe |
| >cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-73 Score=628.73 Aligned_cols=375 Identities=36% Similarity=0.618 Sum_probs=334.5
Q ss_pred EEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCC
Q 005109 318 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 397 (714)
Q Consensus 318 ~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~ 397 (714)
+|+.+++|+.++++|+|+||+|++++ +++|+|||||+|+|+|+++.|+++|++||+++++.+.++.... ..
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~--------~~ 71 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS--------AT 71 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC--------CC
Confidence 36789999999999999999999975 8999999999999999999999999999999999998875221 23
Q ss_pred CCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCC
Q 005109 398 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKP 476 (714)
Q Consensus 398 ~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~ 476 (714)
+.|+| |+|++++|++|+||+++|+|.+|+.||.||+|+++|++|..++ ++.|.+++...++|++|+|.+||++++
T Consensus 72 ~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~ 147 (384)
T cd06206 72 GLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIAL 147 (384)
T ss_pred CCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCC
Confidence 45778 9999999999999999999999999999999999999999885 467999999999999999999999999
Q ss_pred ChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCC-ccccCccchhhcccCCCCCCCCCceeeEEE--ec
Q 005109 477 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFV--RQ 553 (714)
Q Consensus 477 p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g-r~~~G~~S~~L~~~~~g~~~~~~~~v~i~v--~~ 553 (714)
|+++|++.+ |+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|+||+||.++.+|+ .+.+.+ +.
T Consensus 148 ~~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~i~~p~ 220 (384)
T cd06206 148 PLATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGD------SIHVSVRPSH 220 (384)
T ss_pred CHHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCC------eEEEEEecCC
Confidence 999999865 99999999999999766789999999887666554 567899999999887766 456654 45
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|++|++||++|++.+.+ +++++|
T Consensus 221 g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~l~~a~ 299 (384)
T cd06206 221 SAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVV-SVRRAY 299 (384)
T ss_pred CccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCe-EEEEEe
Confidence 7899998778999999999999999999999976543333457899999999995599999999999986654 899999
Q ss_pred ecCCCC-cccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCC
Q 005109 634 SREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQG----SLDSSKAESMVKNLQMTGR 708 (714)
Q Consensus 634 Sr~~~~-k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~gR 708 (714)
||++.. ++|||++|.++.+.+++++.++++|||||| ++|+++|.++|.+|+.+.+ +++.++|++|+++|+++||
T Consensus 300 Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gr 378 (384)
T cd06206 300 SRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGR 378 (384)
T ss_pred cccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCC
Confidence 998754 899999999988888887778899999999 6799999999999999999 9999999999999999999
Q ss_pred eEEecC
Q 005109 709 YLRDVW 714 (714)
Q Consensus 709 y~~DvW 714 (714)
|++|||
T Consensus 379 y~~dvw 384 (384)
T cd06206 379 YATDVF 384 (384)
T ss_pred eeeecC
Confidence 999999
|
NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la |
| >cd06199 SiR Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-71 Score=604.41 Aligned_cols=355 Identities=40% Similarity=0.670 Sum_probs=317.0
Q ss_pred EeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCC
Q 005109 319 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 398 (714)
Q Consensus 319 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~ 398 (714)
|+.+++|++++++++++||+||+++++++|+|||||+|+|+|+++.|++++++||+++++.+.+
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~---------------- 65 (360)
T cd06199 2 VLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST---------------- 65 (360)
T ss_pred cceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC----------------
Confidence 6789999999999999999999998899999999999999999999999999999999887531
Q ss_pred CCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC--CCC
Q 005109 399 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP--SAK 475 (714)
Q Consensus 399 ~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fp--s~~ 475 (714)
++| |+|++++|++|+||+++ .++.|+.||+|+.++++|+. +|+++|.+ .++++|+|++|| +++
T Consensus 66 -~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 -VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 245 89999999999999987 45568999999999888775 68888764 589999999999 999
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEec-C
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-S 554 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~-~ 554 (714)
+|+|||++. +|+++||+|||||+|..++++++++|+++.+.+. ++.+.|+||+||+++...|+ .+.++++. +
T Consensus 132 ~~~gq~l~l-~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~Gd-----~v~v~~~~~~ 204 (360)
T cd06199 132 LTAEELLDL-LRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEGD-----TVPVFVQPNP 204 (360)
T ss_pred CCHHHHHHh-CcCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCCC-----EEEEEEecCC
Confidence 999999975 5889999999999998777899999998866553 46688999999998763333 57888765 5
Q ss_pred CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 555 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 555 ~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
.|++|.++.+|+||||+||||||||||+|++..... .++++||||||++..|++|++||++|++.+.+++++++||
T Consensus 205 ~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~S 280 (360)
T cd06199 205 HFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA----KGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFS 280 (360)
T ss_pred CcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 799998878999999999999999999999876532 3789999999998559999999999999998889999999
Q ss_pred cCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 635 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 635 r~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
|++..++||||+|.++.+.+++++.++++||||||++.|+++|+++|.+|+++.++++.++|++|+++|+++|||++|||
T Consensus 281 r~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 360 (360)
T cd06199 281 RDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDVY 360 (360)
T ss_pred cCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 99888999999999998899888877899999999448999999999999999999999999999999999999999999
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. |
| >PRK06214 sulfite reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-70 Score=616.85 Aligned_cols=370 Identities=38% Similarity=0.654 Sum_probs=326.0
Q ss_pred CCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEee
Q 005109 305 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHT 384 (714)
Q Consensus 305 ~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~ 384 (714)
+...++.++|+.++|+.+++|++++++++++||+||+++++++|+|||||+|+|+|+++.|+++|++||++++..+
T Consensus 159 ~~~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~---- 234 (530)
T PRK06214 159 GPLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI---- 234 (530)
T ss_pred cCCccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc----
Confidence 4445677899999999999999999999999999999989999999999999999999999999999999987532
Q ss_pred CCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCH
Q 005109 385 DKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSL 464 (714)
Q Consensus 385 ~~~~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l 464 (714)
.++|++++|++|+||.++| +.+|+.|+.++++++ +++|+.|++....+.. ....++
T Consensus 235 -----------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~v 290 (530)
T PRK06214 235 -----------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDV 290 (530)
T ss_pred -----------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcH
Confidence 1579999999999999876 788999999988766 7888888754333221 124689
Q ss_pred HHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCC
Q 005109 465 LEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSND 543 (714)
Q Consensus 465 ~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~ 543 (714)
+|+|++||++++|+++|++. +|+++||+|||||+|..++++++|+|++|.+.+ .++.+.|+||+||++ +.+|+
T Consensus 291 ldvL~~fp~~~~~~~~lle~-lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd---- 364 (530)
T PRK06214 291 LAALEKFPGIRPDPEAFVEA-LDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGT---- 364 (530)
T ss_pred HHHHHhCCCCCCCHHHHHhh-cCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCC----
Confidence 99999999999999999975 599999999999999877899999999887653 567789999999984 55554
Q ss_pred CceeeEEEec-CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 544 CSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 544 ~~~v~i~v~~-~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.+.++++. ++|++|.++.+|+||||+||||||||||+|++...+. .++++||||||+...|++|++||++|.+
T Consensus 365 --~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~----~g~~~LffG~R~~~~D~ly~dEL~~l~~ 438 (530)
T PRK06214 365 --RVRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA----PGRNWLFFGHQRSATDFFYEDELNGLKA 438 (530)
T ss_pred --EEEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC----CCCeEEEEEecCChhhhHHHHHHHHHHH
Confidence 57787754 3499998878999999999999999999999876542 2789999999887679999999999999
Q ss_pred cCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005109 623 SGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 702 (714)
Q Consensus 623 ~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~ 702 (714)
.+.+++++++|||++..|+||||+|.++..++++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++
T Consensus 439 ~g~l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~ 518 (530)
T PRK06214 439 AGVLTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAE 518 (530)
T ss_pred hCCceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99988899999999888999999999998999998888899999999667889999999999999999999999999999
Q ss_pred HHHCCCeEEecC
Q 005109 703 LQMTGRYLRDVW 714 (714)
Q Consensus 703 l~~~gRy~~DvW 714 (714)
|+++|||++|||
T Consensus 519 l~~~gRY~~Dvw 530 (530)
T PRK06214 519 LKKAGRYQADVY 530 (530)
T ss_pred HHHCCCEEEecC
Confidence 999999999999
|
|
| >PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-47 Score=386.54 Aligned_cols=217 Identities=45% Similarity=0.812 Sum_probs=186.0
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
+|+.++|+.|+|+.+++|++++++|+|+||+||+++++++|+|||||+|||+|+++.|++++++||+++|+.+.++....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999997553
Q ss_pred CCCCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHH
Q 005109 388 DGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLE 466 (714)
Q Consensus 388 ~~~~~~~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~d 466 (714)
. .....||| |||++++|++|+||+++|+|.+|+.||+|++|+++|++|++|++.+|++.|.+|+...+++++|
T Consensus 82 ~------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~d 155 (219)
T PF00667_consen 82 N------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLD 155 (219)
T ss_dssp T------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHH
T ss_pred c------cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHH
Confidence 2 24567899 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchh
Q 005109 467 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 531 (714)
Q Consensus 467 vl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~ 531 (714)
+|.+||++++|+++|++. +|+++||+|||||||..++++++|||++|.+.++.|+.+.|+||+|
T Consensus 156 il~~fps~~~pl~~ll~~-lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 156 ILEDFPSCKPPLEELLEL-LPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHHSTTBTC-HHHHHHH-S-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HHhhCcccCCCHHHhhhh-CCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999975 5999999999999999999999999999999889999999999998
|
Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B .... |
| >PLN03115 ferredoxin--NADP(+) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=347.09 Aligned_cols=273 Identities=24% Similarity=0.456 Sum_probs=225.4
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|..++|+.++|+.|.+++..+....++||+|+..+ .+.|++|.+++|.|+..
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~-------------------------- 136 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGI-------------------------- 136 (367)
T ss_pred eeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCc--------------------------
Confidence 367789999999999999988888899999998754 78999999999865410
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
|.. |
T Consensus 137 ---------------------------~~~-------------------------------g------------------ 140 (367)
T PLN03115 137 ---------------------------DKN-------------------------------G------------------ 140 (367)
T ss_pred ---------------------------CCC-------------------------------C------------------
Confidence 000 0
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
.+..+|+|||||+|.. .+++++|+|+.+.+.+..|....|+||+||+++.+|+
T Consensus 141 -------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd----- 196 (367)
T PLN03115 141 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA----- 196 (367)
T ss_pred -------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcC-----
Confidence 1134699999999853 2568999998876666667778899999999988876
Q ss_pred ceeeEEEecCCcc-CCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 545 SWAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 545 ~~v~i~v~~~~F~-lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.+.+.+|.|.|. +|.++.+|+||||+|||||||+||++++....... ...++++||||||+.+ |++|.+||++|++
T Consensus 197 -~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~ 274 (367)
T PLN03115 197 -EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 274 (367)
T ss_pred -EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHH
Confidence 477888888765 56566789999999999999999999876543211 1136899999999997 9999999999988
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005109 623 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 696 (714)
Q Consensus 623 ~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 696 (714)
... .+++++++||++. .++|||++|.++.+++++++ ..+++||+||| ++|+++|.++|.++....| + ++
T Consensus 275 ~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~ 349 (367)
T PLN03115 275 KAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DW 349 (367)
T ss_pred hCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cH
Confidence 754 7899999999864 57899999999988998877 45789999999 9999999999999998875 3 57
Q ss_pred HHHHHHHHHCCCeEEecC
Q 005109 697 ESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 697 ~~~~~~l~~~gRy~~DvW 714 (714)
++++++|+++|||+.|||
T Consensus 350 ~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 350 FEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHHCCCeEEecC
Confidence 899999999999999998
|
|
| >cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=316.83 Aligned_cols=233 Identities=48% Similarity=0.875 Sum_probs=198.4
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEec
Q 005109 475 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 475 ~~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~ 553 (714)
...+|||+.+.+|. ..+|+|||+|+|....+.++|+|+.+......+..+.|.+|+||+++++|+ .+.+.++.
T Consensus 31 ~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~Gd------~v~v~~p~ 104 (267)
T cd06182 31 KYQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGA------KVTVFIRP 104 (267)
T ss_pred ccCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCCC------EEEEEEec
Confidence 45679998765443 468999999999755689999998876655555667899999999988765 57788888
Q ss_pred C-CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 554 S-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 554 ~-~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
| .|.++.+..+|+||||+|||||||++|+++++.....+...++++||||+|+.+.|++|.+||++|++.+.+++++++
T Consensus 105 G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~ 184 (267)
T cd06182 105 APSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALTRLDVA 184 (267)
T ss_pred CCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEE
Confidence 8 899987777899999999999999999999886421122237899999999993399999999999998888899999
Q ss_pred EecCCCC-cccccchhhhchHHHHhcccCCcEEEEecCchh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Q 005109 633 FSREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 710 (714)
Q Consensus 633 ~Sr~~~~-k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~-M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 710 (714)
+||+... ++||++.+.+..+.+++.+.+++.||+||| ++ |+++|.++|.++++++++++.++|++++++|++.|||+
T Consensus 185 ~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (267)
T cd06182 185 FSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYV 263 (267)
T ss_pred EccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeE
Confidence 9997653 789999998777777776666779999999 78 99999999999999999999999999999999999999
Q ss_pred EecC
Q 005109 711 RDVW 714 (714)
Q Consensus 711 ~DvW 714 (714)
+|+|
T Consensus 264 ~~~~ 267 (267)
T cd06182 264 EDVW 267 (267)
T ss_pred EecC
Confidence 9999
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t |
| >cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=296.04 Aligned_cols=189 Identities=34% Similarity=0.679 Sum_probs=159.1
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE-ecCCccCCCCCCCCeEEE
Q 005109 491 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV-RQSNFKLPADAKVPIIMI 569 (714)
Q Consensus 491 pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v-~~~~F~lp~~~~~piImI 569 (714)
+|+|||+|+|. .+.++|+|+. .+.|.+|+||+++.+|+ .+.+.+ +.+.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~---------~~~G~~S~~L~~l~~Gd------~v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRK---------HPGGLCSGYLHGLKPGD------TIKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEe---------CCCccchhhHhhCCCcC------EEEEEeccCCCccCC-CCCCCEEEE
Confidence 69999999984 4789988863 24699999999987766 466665 46789876 446899999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhh
Q 005109 570 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 649 (714)
Q Consensus 570 a~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e 649 (714)
|+|||||||+||++++.. .++++||||+|+++.|++|++||++|.+++.+++++.++||++ .++|||+.+..
T Consensus 162 AgGtGIaP~~s~l~~~~~-------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANAA-------RRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhhc-------cCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 999999999999997521 2689999999998558999999999999888888899999975 48999999887
Q ss_pred chHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 650 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 650 ~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
..+.+..++.+++.||+||| ++|+++|.+.|.+|+.+.+ + -+..|+++|||.+|||
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 77666666667899999999 8999999999999998764 2 3889999999999998
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F |
| >cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=296.51 Aligned_cols=211 Identities=32% Similarity=0.501 Sum_probs=174.0
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccC-CCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-PMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~-~g~~~~~~~~v~i~v~ 552 (714)
..-+|||+.+..+. ..+|+|||||+|. ++.++|+|+.+.. +. .+.|.||+||++.. +|+ .+.+.+|
T Consensus 31 ~f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~--~~--~~~G~~S~~L~~~~~~Gd------~v~i~gp 98 (245)
T cd06200 31 QWQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRH--AD--GGLGLGSGWLTRHAPIGA------SVALRLR 98 (245)
T ss_pred CccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEecc--CC--CCCeeechhhhhCCCCCC------EEEEEec
Confidence 34579998765442 5789999999985 4789998876522 11 23499999999864 544 5778876
Q ss_pred -cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 553 -QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 553 -~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
++.|.+|. ..+|+||||+|||||||+||++++...+ .++++||||+|+.+.|++|.+||++|.+.+.++++++
T Consensus 99 ~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~-----~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~ 172 (245)
T cd06200 99 ENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG-----RHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDL 172 (245)
T ss_pred CCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc-----CCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEE
Confidence 45788875 5689999999999999999999987643 1578999999998448999999999999998889999
Q ss_pred EEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCch-hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Q 005109 632 AFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK-SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 710 (714)
Q Consensus 632 a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~-~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 710 (714)
++||++..++||++.+.++.+.+++++..+++||+||| + +|+++|.+.|.+++++ +.+++|+++|||+
T Consensus 173 ~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~~ 241 (245)
T cd06200 173 AFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGE----------EAVEALLAAGRYR 241 (245)
T ss_pred EEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHH----------HHHHHHHHCCCeE
Confidence 99998777899999998887777666556789999999 7 9999999999999975 3489999999999
Q ss_pred EecC
Q 005109 711 RDVW 714 (714)
Q Consensus 711 ~DvW 714 (714)
+|+|
T Consensus 242 ~d~~ 245 (245)
T cd06200 242 RDVY 245 (245)
T ss_pred EecC
Confidence 9999
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD |
| >PLN03116 ferredoxin--NADP+ reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=302.76 Aligned_cols=213 Identities=30% Similarity=0.486 Sum_probs=171.3
Q ss_pred cccccccCCCCCCC---CCeEEEEEEEEEecCCC-C--c-cccCccchhhcccCCCCCCCCCceeeEEEecCCccC-CC-
Q 005109 490 QPRYYSISSSPRVA---PSRIHVTCALVYEKTPT-G--R-VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL-PA- 560 (714)
Q Consensus 490 ~pR~YSIsSsp~~~---~~~i~ltv~~v~~~~~~-g--r-~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~l-p~- 560 (714)
..|+|||||+|... ..+|+|+|+.+.+..+. + . ...|.+|+||+++.+|+ .+.|..|.|.|.+ |.
T Consensus 80 ~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~~~~ 153 (307)
T PLN03116 80 NVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGD------KVQITGPSGKVMLLPEE 153 (307)
T ss_pred CceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCC------EEEEEEecCCceeCCCC
Confidence 47999999999532 23799999876443332 1 1 26799999999977765 5778888898876 43
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-CcEEEEEEecCCC
Q 005109 561 DAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP 638 (714)
Q Consensus 561 ~~~~piImIa~GTGIAPfrs~lq~~~~~~~~-~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~-~~~l~~a~Sr~~~ 638 (714)
+..+|+||||+|||||||+||+++++..... ....++++||||+|+.+ |++|.+||++|++.+. .++++.++||+..
T Consensus 154 ~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~~l~~~~~~~~~~~~~~sr~~~ 232 (307)
T PLN03116 154 DPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFERYLKDYPDNFRYDYALSREQK 232 (307)
T ss_pred CCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHHHHHHhCCCcEEEEEEEccCCc
Confidence 4568999999999999999999988764321 11236899999999997 9999999999998875 6789999999754
Q ss_pred ----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 639 ----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 639 ----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
.++||++.|.+..+.++..+..++.||+||| ++|++++.+.|.+++++.| + +|+++++.|+++|||++|||
T Consensus 233 ~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~g-~---~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 233 NKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEERG-E---SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred ccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---cHHHHHHHHHHcCceEEecC
Confidence 3679999888776666655556789999999 9999999999999988764 4 36789999999999999999
|
|
| >TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=304.53 Aligned_cols=270 Identities=24% Similarity=0.418 Sum_probs=214.3
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|..+.|..++|+.+++++.......++||.|+..+....|+||.++.|.++...
T Consensus 136 ~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~------------------------- 190 (411)
T TIGR03224 136 LYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD------------------------- 190 (411)
T ss_pred cccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC-------------------------
Confidence 3667889999999999998776677899999998765688999988877543100
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
. .|
T Consensus 191 ----------------------------~-------------------------------~g------------------ 193 (411)
T TIGR03224 191 ----------------------------A-------------------------------SG------------------ 193 (411)
T ss_pred ----------------------------c-------------------------------CC------------------
Confidence 0 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCC---CCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~---~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
.+..+|+|||+|+|... .++++|+|+.+. ....|+.+.|.+|+||+++++|+
T Consensus 194 -------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~-~~~~g~~~~G~~S~~L~~lk~Gd----- 248 (411)
T TIGR03224 194 -------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVT-TDHQGNAVRGVASNYLCDLKKGD----- 248 (411)
T ss_pred -------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEE-ecCCCCcCcccchhHHhcCCCcC-----
Confidence 11246999999987421 147999998764 24456677899999999988876
Q ss_pred ceeeEEEecCC-ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHc
Q 005109 545 SWAPIFVRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS 623 (714)
Q Consensus 545 ~~v~i~v~~~~-F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~ 623 (714)
.+.+.+|.|. |.+|..+.+|+||||+|||||||+||++++......+ ..++++||||+|+.+ |++|.+||+++.+.
T Consensus 249 -~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~ 325 (411)
T TIGR03224 249 -KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKD 325 (411)
T ss_pred -EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhc
Confidence 5778888776 6677555689999999999999999999987643211 237999999999998 99999999999865
Q ss_pred CCCcEEEEEEecCCC-CcccccchhhhchHHHHhccc-CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005109 624 GALSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVK 701 (714)
Q Consensus 624 g~~~~l~~a~Sr~~~-~k~yVq~~l~e~~~~l~~~i~-~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~ 701 (714)
. .++++++||+.. .++|||+.+.+....+++++. .+..||+||| ++|+++|.+.|.++..+.+ +. ++++++
T Consensus 326 ~--~~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~~-~~---~~~~~~ 398 (411)
T TIGR03224 326 F--IDINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATNG-LS---WETLEP 398 (411)
T ss_pred C--ceEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-cC---HHHHHH
Confidence 4 357779998643 689999999988777777663 4689999999 9999999999999997653 33 567999
Q ss_pred HHHHCCCeEEecC
Q 005109 702 NLQMTGRYLRDVW 714 (714)
Q Consensus 702 ~l~~~gRy~~DvW 714 (714)
+|+++|||+.|+|
T Consensus 399 ~l~~~~r~~~e~~ 411 (411)
T TIGR03224 399 RLRAEGRLHLETY 411 (411)
T ss_pred HHHHCCCeEEecC
Confidence 9999999999999
|
Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB. |
| >cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=295.65 Aligned_cols=225 Identities=30% Similarity=0.483 Sum_probs=179.5
Q ss_pred ChHHHHHHhcCC--------CcccccccCCCCCC---CCCeEEEEEEEEEecCCCC-ccccCccchhhcccCCCCCCCCC
Q 005109 477 PLGVFFAAIVPR--------LQPRYYSISSSPRV---APSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 477 p~~~~l~~i~p~--------l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~g-r~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
-+|||+.+..|. ..+|+|||||+|.. +++.++|+|+.+...++.+ ..+.|.+|+||+++.+|+
T Consensus 42 ~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd----- 116 (286)
T cd06208 42 LEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGD----- 116 (286)
T ss_pred cCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCC-----
Confidence 458887654332 24799999999863 2468999998875544332 455699999999987765
Q ss_pred ceeeEEEecCCccCC-CCCCCCeEEEecCCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 545 SWAPIFVRQSNFKLP-ADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 545 ~~v~i~v~~~~F~lp-~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~-~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.+.+..+.|.|.+. .+..+|+||||+|||||||+||++++...... ....++++||||+|+.+ |++|.+||+++++
T Consensus 117 -~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~ 194 (286)
T cd06208 117 -DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYPK 194 (286)
T ss_pred -EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHHH
Confidence 57788888887654 34567999999999999999999998765211 11236899999999998 9999999999998
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhccc-CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005109 623 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 696 (714)
Q Consensus 623 ~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i~-~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 696 (714)
+.. .+++++++||++. .++||++.+.+....+++.+. .+..||+||| ++|+++|.+.|.+++. +..+|
T Consensus 195 ~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~~~~ 268 (286)
T cd06208 195 QYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GGLAW 268 (286)
T ss_pred hCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----ccHHH
Confidence 653 6789999999753 578999999887777776664 4569999999 8999999999999987 23679
Q ss_pred HHHHHHHHHCCCeEEecC
Q 005109 697 ESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 697 ~~~~~~l~~~gRy~~DvW 714 (714)
++++++|+++|||.+|+|
T Consensus 269 ~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 269 EEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHcCCeEEecC
Confidence 999999999999999999
|
Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then |
| >PRK09004 FMN-binding protein MioC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=266.50 Aligned_cols=144 Identities=22% Similarity=0.287 Sum_probs=127.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++|.|+|||||||||.+|++|++.+.+.+ ..++++++.+ .+++.+++.+||++||||+|+||+|++.|+
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g--~~~~~~~~~~--------~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~ 70 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAG--FSTETLHGPL--------LDDLSASGLWLIVTSTHGAGDLPDNLQPFF 70 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcC--CceEEeccCC--------HHHhccCCeEEEEECCCCCCCCChhHHHHH
Confidence 568999999999999999999999998876 4466776643 245788999999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCC--chhhHHHHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC--IEDDFSAWRELVWPEL 259 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~--~e~~f~~W~~~l~~~L 259 (714)
+||... ...|++++||||||||++|++||.+++.++++|+++||+++.|++++|++.. .|++|++|.+.++..|
T Consensus 71 ~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 71 EELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 999732 2469999999999999999999999999999999999999999999998753 6899999999988653
|
|
| >PRK05723 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=265.53 Aligned_cols=147 Identities=22% Similarity=0.225 Sum_probs=122.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
++|.|+|||||||||.+|++|++++.+.+ ..+.++ ......+ ..+. ..+.+||++||||+|+||+|+..|++
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g--~~~~~~--~~~~~~~---~~~~-~~~~li~~~sT~G~Ge~Pd~~~~f~~ 72 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAG--FEAWHN--PRASLQD---LQAF-APEALLAVTSTTGMGELPDNLMPLYS 72 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHCC--Cceeec--CcCCHhH---HHhC-CCCeEEEEECCCCCCCCchhHHHHHH
Confidence 57999999999999999999999998765 233332 2222211 1111 23789999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCC--CCchhhHHHHHHHHHHHHH
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~--~~~e~~f~~W~~~l~~~L~ 260 (714)
||.... ...|++++||||||||++| ++||.++++++++|+++||+|+++++++|++ .++|++|.+|++.+|++|.
T Consensus 73 ~L~~~~-~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 73 AIRDQL-PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred HHHhcC-ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence 997321 2369999999999999999 8999999999999999999999999999987 4689999999999998774
|
|
| >PRK08105 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=264.49 Aligned_cols=145 Identities=26% Similarity=0.385 Sum_probs=127.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++|.|+|||||||||.+|++|++.+.+.+ ..+.++++++++. ..+.+++.+||++||||+|+||+|+..|+
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g--~~~~~~~~~~~~~------~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~ 72 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQG--HEVTLFEDPELSD------WQPYQDELVLVVTSTTGQGDLPDSIVPLF 72 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CceEEechhhCCc------hhcccCCeEEEEECCCCCCCCChhHHHHH
Confidence 568999999999999999999999998776 5578888876542 12345789999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 259 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L 259 (714)
++|... ...|++++|||||||||+|++||.++++++++|+++||++++|++++|++. +.|+.|++|.++ |..+
T Consensus 73 ~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 73 QALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred HHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 999832 236999999999999999999999999999999999999999999999865 478999999999 7654
|
|
| >PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=220.42 Aligned_cols=137 Identities=39% Similarity=0.629 Sum_probs=121.9
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHH-HHHHHHH
Q 005109 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA-RFYKWFT 187 (714)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~-~F~~~L~ 187 (714)
|+|+|+|||||++|+.|++++.+++ ..++++++++++.+ ..++..++.++|++||||+|+||+++. .|.+|+.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~g--~~~~~~~~~~~~~~----~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~ 74 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRERG--VEVRVVDLDDFDDS----PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLE 74 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHTT--SEEEEEEGGGSCHH----HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHH
T ss_pred CEEECCchhHHHHHHHHHHHHHHcC--Cceeeechhhhhhh----hhhhhhhceeeEeecccCCCcchhhhhhhhhhccc
Confidence 8999999999999999999999876 56899999998842 246889999999999999999999998 6666776
Q ss_pred hc---cCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHH
Q 005109 188 EK---EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAW 251 (714)
Q Consensus 188 ~~---~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W 251 (714)
.. .....+++++|+|||+||+.|.+||.++|.++++|+++|++++.|++++|+.. +.+++|++|
T Consensus 75 ~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 75 LKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp HHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 21 23456899999999999999988999999999999999999999999999977 789999999
|
Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A .... |
| >cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=221.27 Aligned_cols=188 Identities=27% Similarity=0.458 Sum_probs=145.7
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
...+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.++.+|+ .+.+..
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~G~------~v~i~g 85 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKPGD------EVEVSG 85 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCCCC------EEEEEC
Confidence 34579998765553 57899999999863 47899988754 3599999999987665 577888
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.++.+..+|+||||+|||||||+++++++.... ..++++||||+|+.+ |++|.+||+++++.+..+++++
T Consensus 86 P~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 160 (223)
T cd00322 86 PGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK----PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVL 160 (223)
T ss_pred CCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC----CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEE
Confidence 88998766566789999999999999999999987753 126899999999997 9999999999998877889999
Q ss_pred EEecCCCCcccccchhhhchHHHHhc-ccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 632 AFSREGPTKEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 632 a~Sr~~~~k~yVq~~l~e~~~~l~~~-i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++|++....+.++.+.......... ...+..+|+||| ++|++.+.+.|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~ 213 (223)
T cd00322 161 ALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGP-PAMAKAVREALVSL 213 (223)
T ss_pred EecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 99987654444443332111111111 135789999999 89999999998764
|
FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in |
| >PRK07308 flavodoxin; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=204.68 Aligned_cols=140 Identities=24% Similarity=0.276 Sum_probs=118.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|+++.|+|+|+|||||++|+.|++.+.+.+ ..+++.|+++.+. .++.+++.+||++||||+|++|+++..|+
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g--~~~~~~~~~~~~~------~~l~~~d~vi~g~~t~g~G~~p~~~~~fl 72 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRELG--HDVDVDECTTVDA------SDFEDADIAIVATYTYGDGELPDEIVDFY 72 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhCC--CceEEEecccCCH------hHhccCCEEEEEeCccCCCCCCHHHHHHH
Confidence 457999999999999999999999998765 4567888887764 34778899999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCC--chhhHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC--IEDDFSAWRELV 255 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~--~e~~f~~W~~~l 255 (714)
++|. ...+++++|+|||+||+.|+|||.+++.++++|.++||+++.+....+...+ ..+...+|...|
T Consensus 73 ~~l~----~~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 142 (146)
T PRK07308 73 EDLA----DLDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEEL 142 (146)
T ss_pred HHHh----cCCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 9997 4568999999999999999999999999999999999999988777665432 223344555444
|
|
| >PRK10926 ferredoxin-NADP reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=225.28 Aligned_cols=186 Identities=19% Similarity=0.231 Sum_probs=137.8
Q ss_pred CChHHHHHHhcC--C-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p--~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
.-+|||+.+.++ . ...|+|||+|+|. .+.++++|+.+ ..|.+|+||+++.+|+ .+.+..+
T Consensus 31 ~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gp 93 (248)
T PRK10926 31 FTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTV---------PEGKLSPRLAALKPGD------EVQVVSE 93 (248)
T ss_pred CCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEe---------CCCCcChHHHhCCCCC------EEEEecC
Confidence 357899754332 2 2369999999985 35788888654 4699999999887766 4677776
Q ss_pred c-CCccCCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcC-CCcEE
Q 005109 553 Q-SNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 629 (714)
Q Consensus 553 ~-~~F~lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g-~~~~l 629 (714)
. |.|.++.. ..+|+||||+|||||||+||++++...+. .++++||||+|+.+ |++|.+||+++++.. ..+++
T Consensus 94 ~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~v 168 (248)
T PRK10926 94 AAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLER----FKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLRI 168 (248)
T ss_pred CCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCC----CCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEEE
Confidence 5 55677643 34799999999999999999999765332 26899999999997 999999999998875 35689
Q ss_pred EEEEecCCC---Ccccccchhhhch-HHHHh-cc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 630 IVAFSREGP---TKEYVQHKMMEKS-SDIWN-ML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 630 ~~a~Sr~~~---~k~yVq~~l~e~~-~~l~~-~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
++++||++. .+++|++.+.+.. ..... .+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 169 ~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 169 QTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_pred EEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHh
Confidence 999998643 2567776553321 11111 11 34689999999 89999999887653
|
|
| >cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=229.16 Aligned_cols=179 Identities=17% Similarity=0.342 Sum_probs=137.7
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEEEe
Q 005109 491 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 570 (714)
Q Consensus 491 pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piImIa 570 (714)
.|+|||+|+|. ..+.++|+|+.........+...|.+|+||+++.+|+ .+.|..|.|.|.++. ..+|+||||
T Consensus 86 ~R~ySias~p~-~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPA-EEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGD------KVTASGPFGEFFIKD-TDREMVFIG 157 (283)
T ss_pred ccccCcCCCCC-CCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCC------EEEEECccccccccC-CCCcEEEEE
Confidence 49999999986 3478999887543211111345799999999987765 577888889998864 468999999
Q ss_pred cCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC------Cccccc
Q 005109 571 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQ 644 (714)
Q Consensus 571 ~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~------~k~yVq 644 (714)
+|||||||++|+++++..... ..+++||||+|+.+ |++|.+||+++++....+++++++|++.. .++||+
T Consensus 158 gGtGItP~~s~l~~~~~~~~~---~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKTLKS---KRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred ecccHhHHHHHHHHHHhcCCC---CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 999999999999987664321 25899999999997 99999999999988777788888887531 457888
Q ss_pred chhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 645 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 645 ~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+.+.+.. +.... ..+..+|+||| ++|++++.+.|.+.
T Consensus 234 ~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~ 271 (283)
T cd06188 234 QVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDL 271 (283)
T ss_pred HHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 7765532 11111 23578999999 99999999988764
|
(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain. |
| >cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-24 Score=220.43 Aligned_cols=183 Identities=20% Similarity=0.318 Sum_probs=145.8
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEec
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~ 553 (714)
+..+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+ ..|.+|++|.+ +.+|+ .+.+..|.
T Consensus 25 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 88 (224)
T cd06189 25 DFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAV---------PGGSFSDYVFEELKENG------LVRIEGPL 88 (224)
T ss_pred ccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEec---------CCCccHHHHHHhccCCC------EEEEecCC
Confidence 4567999876656667999999999863 47899888643 35899999876 66655 57788888
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.++.+..+++||||+|||||||++++++...... ..+++|+||+|+.. |++|.+||++++++...++++.++
T Consensus 89 G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 163 (224)
T cd06189 89 GDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGS----KRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPVL 163 (224)
T ss_pred ccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCC----CCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEEe
Confidence 9998876667899999999999999999999876532 26899999999997 999999999999887778888899
Q ss_pred ecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|++.. .++|+++.+.+... + ..+..+|+||| ++|++++.+.|.+.
T Consensus 164 s~~~~~~~g~~g~v~~~l~~~~~---~--~~~~~v~vCGp-~~m~~~~~~~l~~~ 212 (224)
T cd06189 164 SEPEEGWQGRTGLVHEAVLEDFP---D--LSDFDVYACGS-PEMVYAARDDFVEK 212 (224)
T ss_pred CCCCcCCccccccHHHHHHhhcc---C--ccccEEEEECC-HHHHHHHHHHHHHc
Confidence 98543 45777776654311 1 24678999999 89999999988653
|
Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. |
| >cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-24 Score=218.81 Aligned_cols=184 Identities=24% Similarity=0.355 Sum_probs=143.4
Q ss_pred CCChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.|..|
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 98 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLV---------PGGIATTYVHKQLKEGD------ELEISGP 98 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEEC---------CCCcchhhHhhcCCCCC------EEEEECC
Confidence 346789986655554 5899999999863 47899888643 4699999997 566655 5678888
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++.+..+|+||||+|||||||++++++....+. .++++||||+|+.+ |++|.+||+++++....++++.+
T Consensus 99 ~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 99 YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD----TRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC----CCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEE
Confidence 89998876556899999999999999999999876532 26899999999997 99999999999988777788888
Q ss_pred EecCCC------CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~------~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+||+.. .++|+++.+.+.. ....++..+|+||| ++|++++.+.|.+.
T Consensus 174 ~s~~~~~~~~~~~~g~v~~~l~~~~----~~~~~~~~vyvCGp-~~m~~~~~~~L~~~ 226 (238)
T cd06211 174 LSREPPESNWKGFTGFVHDAAKKHF----KNDFRGHKAYLCGP-PPMIDACIKTLMQG 226 (238)
T ss_pred ECCCCCCcCcccccCcHHHHHHHhc----ccccccCEEEEECC-HHHHHHHHHHHHHc
Confidence 998642 3567776554321 10124678999999 99999999988764
|
This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. |
| >PRK08051 fre FMN reductase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-24 Score=218.35 Aligned_cols=183 Identities=17% Similarity=0.228 Sum_probs=140.9
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhh-cccCCCCCCCCCceeeEEEec
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWM-KNSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L-~~~~~g~~~~~~~~v~i~v~~ 553 (714)
...+|||+.+.+|....|+|||+|.|. ..+.++|+|+.+ ..|..++++ .++.+|+ .+.+..|.
T Consensus 29 ~~~pGQ~v~l~~~~~~~r~ySias~p~-~~~~l~~~v~~~---------~~~~~~~~~~~~l~~G~------~v~v~gP~ 92 (232)
T PRK08051 29 SFRAGQYLMVVMGEKDKRPFSIASTPR-EKGFIELHIGAS---------ELNLYAMAVMERILKDG------EIEVDIPH 92 (232)
T ss_pred ccCCCCEEEEEcCCCcceeecccCCCC-CCCcEEEEEEEc---------CCCcchHHHHHHcCCCC------EEEEEcCC
Confidence 346789986655666789999999985 347799887643 224455555 5566655 57788888
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.++.+..+|+||||+||||||++++++++..... ..+++|+||+|+.+ |.+|.+||++++++...++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~----~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T PRK08051 93 GDAWLREESERPLLLIAGGTGFSYARSILLTALAQGP----NRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVV 167 (232)
T ss_pred CceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCC----CCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEe
Confidence 9998876556899999999999999999999876532 26899999999998 999999999999887778899888
Q ss_pred ecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHH-HHH
Q 005109 634 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HTI 684 (714)
Q Consensus 634 Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L-~~i 684 (714)
|+++. .++||++.+.+.. .+ ..+..+|+||| ++|+++|.+.| .+.
T Consensus 168 ~~~~~~~~~~~g~v~~~l~~~~---~~--~~~~~vyicGp-~~m~~~v~~~l~~~~ 217 (232)
T PRK08051 168 EQPEEGWQGKTGTVLTAVMQDF---GS--LAEYDIYIAGR-FEMAKIARELFCRER 217 (232)
T ss_pred CCCCCCcccceeeehHHHHhhc---cC--cccCEEEEECC-HHHHHHHHHHHHHHc
Confidence 87543 4677777665431 11 13568999999 89999999888 554
|
|
| >cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-24 Score=218.06 Aligned_cols=185 Identities=22% Similarity=0.210 Sum_probs=142.9
Q ss_pred CChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEec
Q 005109 476 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~ 553 (714)
..+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+ ..|.+|.||++ +.+|+ .+.|.+|.
T Consensus 24 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~---------~~G~~s~~l~~~~~~g~------~v~v~gP~ 87 (232)
T cd06190 24 FLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRK---------PGGAASNALFDNLEPGD------ELELDGPY 87 (232)
T ss_pred cCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEc---------CCCcchHHHhhcCCCCC------EEEEECCc
Confidence 45789987655666 6899999999863 47899888643 45899999987 45554 56788888
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.++.+..+++||||+|||||||++++++...... ....+++|+||+|+.+ |++|.+||+++.+.+..+++++++
T Consensus 88 G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~--~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 164 (232)
T cd06190 88 GLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY--LSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPAV 164 (232)
T ss_pred ccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc--CCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEEe
Confidence 9888765556899999999999999999999876421 1236899999999987 999999999999887778888888
Q ss_pred ecCCC--------CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~--------~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|+++. .++|+++.+.+.. .....+..||+||| ++|++++.+.|.+.
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~----~~~~~~~~vyiCGp-~~m~~~v~~~l~~~ 218 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATL----GDRLAEFEFYFAGP-PPMVDAVQRMLMIE 218 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhc----cCCccccEEEEECC-HHHHHHHHHHHHHh
Confidence 87642 2356665544321 11124689999999 89999999888664
|
Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family. |
| >PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-24 Score=231.66 Aligned_cols=182 Identities=18% Similarity=0.281 Sum_probs=144.6
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEecC
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 554 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~~ 554 (714)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.+..|.|
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~l~~~l~~G~------~v~v~gP~G 195 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHM---------PGGVFTDHVFGALKERD------ILRIEGPLG 195 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEec---------CCCccHHHHHHhccCCC------EEEEEcCce
Confidence 456899876556566899999999863 47899988743 46999999974 66655 577888899
Q ss_pred CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 555 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 555 ~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
.|.++....+|+||||+|||||||++|++++...+. .++++||||+|+.+ |+++.++|++|.++...++++.++|
T Consensus 196 ~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~----~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~s 270 (339)
T PRK07609 196 TFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGI----QRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVVS 270 (339)
T ss_pred eEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEec
Confidence 999876667899999999999999999999886432 26899999999997 9999999999988777788999999
Q ss_pred cCCC------CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 635 REGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 635 r~~~------~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|+.+ .++||++.+.+.. .+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 271 ~~~~~~~~~g~~G~v~~~~~~~~---~~--~~~~~vy~CGp-~~m~~~~~~~l~~~ 320 (339)
T PRK07609 271 DALDDDAWTGRTGFVHQAVLEDF---PD--LSGHQVYACGS-PVMVYAARDDFVAA 320 (339)
T ss_pred CCCCCCCccCccCcHHHHHHhhc---cc--ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 8421 4577777665431 11 14578999999 99999999988663
|
|
| >PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-24 Score=234.74 Aligned_cols=183 Identities=17% Similarity=0.256 Sum_probs=138.9
Q ss_pred ChHHHHHHhcC--C---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEE
Q 005109 477 PLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 550 (714)
Q Consensus 477 p~~~~l~~i~p--~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~ 550 (714)
.+|||+.+.+| . ..+|+|||+|+|. .+.++|+|+. ...|.+|+||++ +.+|+ .+.+.
T Consensus 186 ~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~---------~~~G~~S~~L~~~l~~Gd------~v~v~ 248 (399)
T PRK13289 186 KPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKR---------EAGGKVSNYLHDHVNVGD------VLELA 248 (399)
T ss_pred CCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEE---------CCCCeehHHHhhcCCCCC------EEEEE
Confidence 46888865433 1 1349999999986 3678888763 245999999987 77765 57788
Q ss_pred EecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEE
Q 005109 551 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630 (714)
Q Consensus 551 v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~ 630 (714)
.|.|.|.++.+..+|+||||+|||||||+||++++..... .++++||||+|+.+ |++|++||+++++.+..++++
T Consensus 249 gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~~~ 323 (399)
T PRK13289 249 APAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQP----KRPVHFIHAARNGG-VHAFRDEVEALAARHPNLKAH 323 (399)
T ss_pred cCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcEEE
Confidence 8899999987667899999999999999999999876432 26899999999998 999999999999887777899
Q ss_pred EEEecCCCC----ccccc-chhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 631 VAFSREGPT----KEYVQ-HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 631 ~a~Sr~~~~----k~yVq-~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++|++... ..|++ .++.+ +.+.+.+ ..+..+|+||| ++|+++|.+.|.+.
T Consensus 324 ~~~s~~~~~~~~~~~~~~~g~i~~--~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 380 (399)
T PRK13289 324 TWYREPTEQDRAGEDFDSEGLMDL--EWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLEL 380 (399)
T ss_pred EEECCCccccccCCcccccCcccH--HHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 999985431 11222 22221 1223333 24789999999 99999999988653
|
|
| >PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-24 Score=234.90 Aligned_cols=181 Identities=19% Similarity=0.335 Sum_probs=142.6
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEE
Q 005109 489 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 568 (714)
Q Consensus 489 l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piIm 568 (714)
...|+|||+|.|.. .+.++|+|+.+......++.+.|.+|+||+++.+|+ .+.|..|.|.|.++ +..+|+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~-~~~~~ivl 279 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGD------KVTISGPFGEFFAK-DTDAEMVF 279 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCC------EEEEEccccCcEec-CCCceEEE
Confidence 35799999999863 468999998765544455667899999999887766 57788889999876 35689999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC------Cccc
Q 005109 569 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 642 (714)
Q Consensus 569 Ia~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~------~k~y 642 (714)
||+|||||||+||+++.+..... .++++||||+|+.+ |++|.+||+++++...++++++++||+.. .+++
T Consensus 280 IAgGtGIaP~~sml~~~l~~~~~---~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 355 (409)
T PRK05464 280 IGGGAGMAPMRSHIFDQLKRLKS---KRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGF 355 (409)
T ss_pred EEeccChhHHHHHHHHHHhCCCC---CceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccce
Confidence 99999999999999988764321 26899999999997 99999999999988888889999987532 4577
Q ss_pred ccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 643 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 643 Vq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++.+.+.. +.+.. ..+..||+||| ++|++++.+.|.+.
T Consensus 356 v~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~ 395 (409)
T PRK05464 356 IHNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDL 395 (409)
T ss_pred eCHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 877665431 11111 24579999999 99999999988654
|
|
| >cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=216.06 Aligned_cols=184 Identities=22% Similarity=0.314 Sum_probs=143.2
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|. ..+|+|||+|+|.. .+.+.|+|+.+ ..|.+|+||.+ +.+|+ .+.|..|
T Consensus 34 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP 97 (236)
T cd06210 34 EFVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLL---------PGGAFSTYLETRAKVGQ------RLNLRGP 97 (236)
T ss_pred CcCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEc---------CCCccchhhhhCcCCCC------EEEEecC
Confidence 34679998655453 35799999999863 46888888643 35899999997 66665 5778888
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++.+..+++||||+|||||||+++++++..... .++++||||+|+.+ |++|.+||+++++....++++++
T Consensus 98 ~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 98 LGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE----PQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred cceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCC----CceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 89999876556899999999999999999999876432 26899999999987 99999999999988777889999
Q ss_pred EecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+||++. .++++++.+.+. +.+ ......+|+||| ++|++++.+.|.+.
T Consensus 173 ~s~~~~~~~~~~g~~~~~l~~~---l~~-~~~~~~vyicGp-~~m~~~~~~~l~~~ 223 (236)
T cd06210 173 VWRPGGEWEGYRGTVVDALRED---LAS-SDAKPDIYLCGP-PGMVDAAFAAAREA 223 (236)
T ss_pred EcCCCCCcCCccCcHHHHHHHh---hcc-cCCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 997532 356666655432 111 123578999999 89999999988753
|
This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water. |
| >cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=215.18 Aligned_cols=180 Identities=23% Similarity=0.352 Sum_probs=142.4
Q ss_pred CCChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~v~gP 92 (228)
T cd06209 30 AFLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLL---------PGGAMSSYLRDRAQPGD------RLTLTGP 92 (228)
T ss_pred ccCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEc---------CCCcchhhHHhccCCCC------EEEEECC
Confidence 345789986655544 4799999999863 7888887643 46999999998 66655 5677778
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++.. .+|++|||+|||||||++++++..... ..++++|+||+|+.+ |++|.+||+++.+....++++++
T Consensus 93 ~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 166 (228)
T cd06209 93 LGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG----SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTV 166 (228)
T ss_pred cccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC----CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEE
Confidence 888887644 489999999999999999999987643 236899999999987 99999999999988777888899
Q ss_pred EecCCC---CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 633 FSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 633 ~Sr~~~---~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
+||+.. .++|+++.+.+.. +...+..+|+||| ++|+++|++.|.+
T Consensus 167 ~s~~~~~~~~~g~v~~~~~~~~-----~~~~~~~v~icGp-~~m~~~~~~~l~~ 214 (228)
T cd06209 167 VADPDSWHPRKGYVTDHLEAED-----LNDGDVDVYLCGP-PPMVDAVRSWLDE 214 (228)
T ss_pred EcCCCccCCCcCCccHHHHHhh-----ccCCCcEEEEeCC-HHHHHHHHHHHHH
Confidence 998643 4568887665431 1124578999999 8999999999875
|
Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. |
| >cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=215.26 Aligned_cols=185 Identities=19% Similarity=0.312 Sum_probs=137.8
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v 551 (714)
..+|||+.+.++ ...+|+|||+|.|. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.|.+
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd------~v~i~g 90 (231)
T cd06191 28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRV---------PGGRVSNYLREHIQPGM------TVEVMG 90 (231)
T ss_pred CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEEC---------CCCccchHHHhcCCCCC------EEEEeC
Confidence 457888854333 22479999999986 47899888643 3589999998 577765 577888
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.+++....++||||+||||||+++++++...... ..+++||||+|+.+ |++|.+||+++++....+++++
T Consensus 91 P~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 165 (231)
T cd06191 91 PQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAP----ESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLC 165 (231)
T ss_pred CccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCC----CCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEE
Confidence 899999876666899999999999999999999876432 26899999999997 9999999999998777778999
Q ss_pred EEecCCCCcccccchhhhchHHHHhccc--CCcEEEEecCchhhHHHHHHHHHH
Q 005109 632 AFSREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 632 a~Sr~~~~k~yVq~~l~e~~~~l~~~i~--~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
++||++....+.+++..........++. .+..+|+||| ++|++++.+.|.+
T Consensus 166 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~ 218 (231)
T cd06191 166 IFTRETLDSDLLHGRIDGEQSLGAALIPDRLEREAFICGP-AGMMDAVETALKE 218 (231)
T ss_pred EECCCCCCccccCCcccccHHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHH
Confidence 9998653322222211111111111221 3579999999 8999999988865
|
FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in |
| >TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=232.50 Aligned_cols=181 Identities=18% Similarity=0.333 Sum_probs=139.8
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEE
Q 005109 489 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 568 (714)
Q Consensus 489 l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piIm 568 (714)
...|+|||+|+|.. .+.++|+|+.+.......+.+.|.+|+||+++.+|+ .+.+..|.|.|.++. ..+|+||
T Consensus 204 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~lvl 275 (405)
T TIGR01941 204 ETVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVF 275 (405)
T ss_pred ccceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcC------EEEEEeccCCCeecC-CCCCEEE
Confidence 34699999999963 478999998653222223456799999999987766 577888999998764 4689999
Q ss_pred EecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC------Cccc
Q 005109 569 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 642 (714)
Q Consensus 569 Ia~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~------~k~y 642 (714)
||+|||||||++|+++.+..... ..+++||||+|+++ |++|.+||+++.+....+++++++|+++. .+++
T Consensus 276 IAgGtGIaP~lsmi~~~l~~~~~---~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 351 (405)
T TIGR01941 276 IGGGAGMAPMRSHIFDQLKRLKS---KRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGF 351 (405)
T ss_pred EecCcCcchHHHHHHHHHhcCCC---CCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccce
Confidence 99999999999999987754321 26899999999997 99999999999988888888989887532 3567
Q ss_pred ccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 643 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 643 Vq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|++.+.+.. +.+.. ..++.||+||| ++|++++.+.|.+.
T Consensus 352 v~~~l~~~~--l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~ 391 (405)
T TIGR01941 352 IHNVLYENY--LKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDL 391 (405)
T ss_pred eCHHHHHhh--hcccCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 877664321 11111 24678999999 99999999888653
|
This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. |
| >cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=215.86 Aligned_cols=187 Identities=19% Similarity=0.258 Sum_probs=143.4
Q ss_pred CChHHHHHHhcCCC----cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005109 476 PPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 550 (714)
Q Consensus 476 ~p~~~~l~~i~p~l----~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~- 550 (714)
..+|||+.+-+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||+++.+|+ .+.+.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 87 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILV---------PDGPLTPRLFKLKPGD------TIYVGK 87 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEe---------cCCCCchHHhcCCCCC------EEEECc
Confidence 45688876544432 4699999999863 6888887643 4599999999887766 46777
Q ss_pred EecCCccCCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHc-CCCcE
Q 005109 551 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQ 628 (714)
Q Consensus 551 v~~~~F~lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~-g~~~~ 628 (714)
.+.|.|.++.. ..++++|||+|||||||++++++...... .++++||||+|+.+ |++|.+||+++++. ...++
T Consensus 88 gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 162 (241)
T cd06195 88 KPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWER----FDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFR 162 (241)
T ss_pred CCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCC----CCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEE
Confidence 78889998765 45899999999999999999999875432 26899999999997 99999999999877 55678
Q ss_pred EEEEEecCCCC---cccccchhhhc-hHHHHhc--ccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005109 629 LIVAFSREGPT---KEYVQHKMMEK-SSDIWNM--LSEGAYLYVCGDAKSMARDVHRTLHTIV 685 (714)
Q Consensus 629 l~~a~Sr~~~~---k~yVq~~l~e~-~~~l~~~--i~~~~~iyvCGpa~~M~~~V~~~L~~i~ 685 (714)
+++++||++.. ++|+++.+.+. ....... ...+..||+||| ++|++++.+.|.+..
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G 224 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEKG 224 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 88888987643 57888766521 1111111 124679999999 899999999887653
|
Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. |
| >PRK11872 antC anthranilate dioxygenase reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=226.48 Aligned_cols=181 Identities=19% Similarity=0.327 Sum_probs=143.4
Q ss_pred CChHHHHHHhcCCCc-ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEec
Q 005109 476 PPLGVFFAAIVPRLQ-PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~-pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~ 553 (714)
..+|||+.+.+|... .|+|||+|+|. ..+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|.
T Consensus 137 ~~pGQ~v~l~~~~~~~~R~ySias~p~-~~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~------~v~i~gP~ 200 (340)
T PRK11872 137 FLPGQYARLQIPGTDDWRSYSFANRPN-ATNQLQFLIRLL---------PDGVMSNYLRERCQVGD------EILFEAPL 200 (340)
T ss_pred cCCCCEEEEEeCCCCceeecccCCCCC-CCCeEEEEEEEC---------CCCcchhhHhhCCCCCC------EEEEEcCc
Confidence 457899866556443 79999999986 347899988753 46899999974 66665 57788889
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.++. ..+|+||||+|||||||++|++++...+. .++++||||+|+++ |++|.+||++|++....++++.+.
T Consensus 201 G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~~ 274 (340)
T PRK11872 201 GAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQGC----SPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPVV 274 (340)
T ss_pred ceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcCC----CCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEEE
Confidence 9999864 35899999999999999999999876432 26899999999997 999999999999888888999988
Q ss_pred ecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|+.+. .++||++.+.+.. +......||+||| ++|++++.+.|.+.
T Consensus 275 s~~~~~~~g~~g~v~~~l~~~~-----l~~~~~~vy~CGp-~~mv~~~~~~L~~~ 323 (340)
T PRK11872 275 SKASADWQGKRGYIHEHFDKAQ-----LRDQAFDMYLCGP-PPMVEAVKQWLDEQ 323 (340)
T ss_pred eCCCCcCCCceeeccHHHHHhh-----cCcCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 87532 4678887765421 1123468999999 99999999998654
|
|
| >cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-23 Score=211.82 Aligned_cols=182 Identities=22% Similarity=0.304 Sum_probs=143.8
Q ss_pred CChHHHHHHhcCCC--cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVPRL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p~l--~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~ 552 (714)
..+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.. .+|.+|+||.+ +.+|+ .+.|.+|
T Consensus 24 ~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 87 (224)
T cd06187 24 FWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAV---------PGGRVSNALHDELKVGD------RVRLSGP 87 (224)
T ss_pred cCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeC---------CCCcchHHHhhcCccCC------EEEEeCC
Confidence 35689987655544 3799999999863 46788888642 35999999998 77765 5778888
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++.+...++||||+|||||||+++++++.... ...+++|+|++|+.+ |++|.+||+++.+....++++++
T Consensus 88 ~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~----~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 162 (224)
T cd06187 88 YGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG----EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPV 162 (224)
T ss_pred ccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEE
Confidence 8999887655689999999999999999999987643 226899999999997 99999999999988777788888
Q ss_pred EecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++++. .++|+++.+.+... + ..+..+|+||| ++|++++.+.|.+.
T Consensus 163 ~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~~~v~vcGp-~~~~~~v~~~l~~~ 212 (224)
T cd06187 163 VSHEEGAWTGRRGLVTDVVGRDGP---D--WADHDIYICGP-PAMVDATVDALLAR 212 (224)
T ss_pred eCCCCCccCCCcccHHHHHHHhcc---c--cccCEEEEECC-HHHHHHHHHHHHHc
Confidence 887542 46788776654311 1 24689999999 99999999988653
|
Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. |
| >cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=213.41 Aligned_cols=183 Identities=22% Similarity=0.347 Sum_probs=142.2
Q ss_pred CCChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.+..|
T Consensus 29 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 92 (232)
T cd06212 29 KFFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKY---------PGGLFSSFLDDGLAVGD------PVTVTGP 92 (232)
T ss_pred CcCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCchhhHHhhcCCCCC------EEEEEcC
Confidence 345789986554543 5799999999863 47899888642 45899999986 66665 5778888
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++....+++||||+|||||||++++++...... .++++|+||+|+.. |++|.+||+++++....++++.+
T Consensus 93 ~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (232)
T cd06212 93 YGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGS----DRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPA 167 (232)
T ss_pred cccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCC----CCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEE
Confidence 89998876556899999999999999999999886532 26899999999997 99999999999987777788888
Q ss_pred EecCCC------CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~------~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+|++.. ..+++++.+.+.. .+ .++..+|+||| ++|++++.+.|.+.
T Consensus 168 ~s~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~~~v~~CGp-~~~~~~v~~~l~~~ 219 (232)
T cd06212 168 LSESPDDEGWSGETGLVTEVVQRNE---AT--LAGCDVYLCGP-PPMIDAALPVLEMS 219 (232)
T ss_pred ECCCCCCCCCcCCcccHHHHHHhhc---cC--ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 998542 2456665443321 11 14678999999 99999999988754
|
These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. |
| >PRK10684 HCP oxidoreductase, NADH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-23 Score=224.64 Aligned_cols=184 Identities=16% Similarity=0.277 Sum_probs=139.9
Q ss_pred CChHHHHHHhcCC--CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVPR--LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p~--l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v~ 552 (714)
.-+|||+.+-+|. ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.+..|
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP 100 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRI---------DDGVGSQWLTRDVKRGD------YLWLSDA 100 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEeCC
Confidence 3578987654442 23599999999863 46799988743 5699999997 576665 5677778
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++....+|+||||+|||||||+||+++...... ..+++||||+|+.+ |++|.+||+++++....+++++.
T Consensus 101 ~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~----~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 175 (332)
T PRK10684 101 MGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP----QADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLV 175 (332)
T ss_pred ccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC----CCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEE
Confidence 89999876667899999999999999999998866432 26899999999997 99999999999987766677777
Q ss_pred EecCCCCcccccchhhhchHHHHhccc--CCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~~k~yVq~~l~e~~~~l~~~i~--~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.++++ .++|.++++.+. .+.+.+. .+..+|+||| ++|++++.+.|.+.
T Consensus 176 ~~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~ 225 (332)
T PRK10684 176 AENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKAL 225 (332)
T ss_pred eccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 66543 355666666432 1222221 3578999999 99999999988764
|
|
| >PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-23 Score=220.15 Aligned_cols=180 Identities=21% Similarity=0.268 Sum_probs=137.2
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCC
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 555 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~ 555 (714)
..+|||+.+.+|....|+|||+|+|. .++.++|+|+. .|.+|+||.++.+|+ .+.|..|.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~-~~~~l~l~Ik~-----------~G~~S~~L~~l~~Gd------~v~v~gP~G~ 99 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPT-RKGFFELCIRR-----------AGRVTTVIHRLKEGD------IVGVRGPYGN 99 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCC-CCCEEEEEEEe-----------CChHHHHHHhCCCCC------EEEEeCCCCC
Confidence 45799986555655569999999986 34789988863 288999999887765 4677788787
Q ss_pred -ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 556 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 556 -F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
|.++....+|+||||+|||||||++|+++++.... ..++++||||+|+.+ |++|++||+++++....++++.++|
T Consensus 100 ~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~---~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s 175 (289)
T PRK08345 100 GFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW---KYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVT 175 (289)
T ss_pred CCCcccccCceEEEEecccchhHHHHHHHHHHhcCC---CCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEec
Confidence 66654445799999999999999999999876431 126899999999997 9999999999988777778899999
Q ss_pred cCCCC---------------cccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 635 REGPT---------------KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 635 r~~~~---------------k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|++.. ++++++.+.+. .. ..+..+|+||| ++|++++.+.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~ 234 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINR 234 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHc
Confidence 85432 22333222211 11 24578999999 99999999988764
|
|
| >cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-23 Score=208.56 Aligned_cols=183 Identities=19% Similarity=0.243 Sum_probs=138.9
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEecC
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 554 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~~ 554 (714)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..|.|
T Consensus 24 ~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~gP~G 87 (222)
T cd06194 24 YLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRK---------PNGAFSGWLGEEARPGH------ALRLQGPFG 87 (222)
T ss_pred cCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEec---------cCCccchHHHhccCCCC------EEEEecCcC
Confidence 457999876556667899999999863 36788887643 35999999998 46655 577888888
Q ss_pred CccCCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 555 NFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 555 ~F~lp~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
.|.+.+ ...+|++|||+|||||||+++++++..... .++++||||+|+.+ |++|.+||+++++....++++.+.
T Consensus 88 ~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 162 (222)
T cd06194 88 QAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH----QGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPCV 162 (222)
T ss_pred CeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC----CccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEEE
Confidence 887653 456799999999999999999999876432 26899999999998 999999999999876667888888
Q ss_pred ecCCCCcc-cccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGPTKE-YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~~k~-yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++..... +..+.+.+. +. .+..+..+|+||| ++|++++++.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~ 209 (222)
T cd06194 163 SEGSQGDPRVRAGRIAAH---LP-PLTRDDVVYLCGA-PSMVNAVRRRAFLA 209 (222)
T ss_pred ccCCCCCcccccchhhhh---hc-cccCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 88654321 111122211 11 1235689999999 99999999998764
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e |
| >PRK06703 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=192.70 Aligned_cols=146 Identities=19% Similarity=0.189 Sum_probs=122.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++++|+|+|+||||+.+|+.|++++.+.+ ..+++.++++.+. .++.+++.+||++||||+|++|+++..|+
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFD--HEVVLQEMDGMDA------EELLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcC--CceEEEehhhCCH------HHHhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 568999999999999999999999998765 5578888887664 34788999999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC---CchhhHHHHHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPELD 260 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~---~~e~~f~~W~~~l~~~L~ 260 (714)
++|. ...+++++++|||+||+.|++||.+++.++++|+++|++.+.+....+... ...+...+|.++|...++
T Consensus 73 ~~l~----~~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 73 EDLE----NIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred HHHh----cCCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHHH
Confidence 9996 345789999999999999999999999999999999999887766554433 234466788888766554
Q ss_pred h
Q 005109 261 N 261 (714)
Q Consensus 261 ~ 261 (714)
+
T Consensus 149 ~ 149 (151)
T PRK06703 149 Q 149 (151)
T ss_pred h
Confidence 3
|
|
| >PRK05713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=218.89 Aligned_cols=176 Identities=16% Similarity=0.209 Sum_probs=132.8
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecC-
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS- 554 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~- 554 (714)
..+|||+.+..+....|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.++.+|+ .+.+..+.|
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd------~v~l~~p~gg 182 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCS---------RPGAFCDAARQLQVGD------LLRLGELRGG 182 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEc---------CCCccchhhhcCCCCC------EEEEccCCCC
Confidence 457899865445556899999999863 47889888643 4699999998887776 455655665
Q ss_pred CccCCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 555 NFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 555 ~F~lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
.|.++.+ ..+|+||||+|||||||+|++++..+.+. .++++|+||+|+.+ |++|.+||++|++....++++.+.
T Consensus 183 ~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 257 (312)
T PRK05713 183 ALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH----QGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELVT 257 (312)
T ss_pred ceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEEE
Confidence 5666544 46899999999999999999999876542 26899999999998 999999999999877667777766
Q ss_pred ecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
++ ++++.+.+. . ....+..+|+||| ++|++++.+.|.+.
T Consensus 258 ~~------~~~~~l~~~----~-~~~~~~~vyiCGp-~~mv~~~~~~L~~~ 296 (312)
T PRK05713 258 AA------QLPAALAEL----R-LVSRQTMALLCGS-PASVERFARRLYLA 296 (312)
T ss_pred Cc------chhhhhhhc----c-CCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 53 233332211 1 1124578999999 99999999998653
|
|
| >cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=206.90 Aligned_cols=179 Identities=23% Similarity=0.359 Sum_probs=137.7
Q ss_pred CChHHHHHHhcCCC-cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEec
Q 005109 476 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~ 553 (714)
..+|||+.+.+|.. ..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|..|.
T Consensus 28 ~~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 91 (227)
T cd06213 28 YKAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKV---------PGGAFSGWLFGADRTGE------RLTVRGPF 91 (227)
T ss_pred cCCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCcchHHHHhcCCCCC------EEEEeCCC
Confidence 34688886554543 4899999999863 47899888642 45889999965 56654 57788888
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHc-CCCcEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLIVA 632 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~-g~~~~l~~a 632 (714)
|.|.++. ..+++||||+|||||||+++++++..... .++++||||+|+++ |.+|.+||+++++. ...++++.+
T Consensus 92 G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 165 (227)
T cd06213 92 GDFWLRP-GDAPILCIAGGSGLAPILAILEQARAAGT----KRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPV 165 (227)
T ss_pred cceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcCC----CCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEE
Confidence 9998864 35789999999999999999999876432 26799999999997 99999999999865 356678888
Q ss_pred EecCCC------CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~------~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+|++.. .++++++.+.+. +..+..+|+||| ++|++++.+.|.+.
T Consensus 166 ~s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~~ 215 (227)
T cd06213 166 LSEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRAL 215 (227)
T ss_pred ecCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 887532 235666655432 135689999999 89999998888653
|
Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. |
| >cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-22 Score=208.99 Aligned_cols=180 Identities=20% Similarity=0.306 Sum_probs=138.2
Q ss_pred CChHHHHHHhcC--C---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeE
Q 005109 476 PPLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 549 (714)
Q Consensus 476 ~p~~~~l~~i~p--~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i 549 (714)
..+|||+.+.++ . ...|+|||+|.|.. +.++|+|+.+ ..|.+|+||.+ +.+|+ .+.|
T Consensus 37 ~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i 99 (247)
T cd06184 37 FLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKRE---------PGGLVSNYLHDNVKVGD------VLEV 99 (247)
T ss_pred CCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEE
Confidence 456888765443 2 35799999999863 4788877532 35999999998 77765 4678
Q ss_pred EEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEE
Q 005109 550 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 629 (714)
Q Consensus 550 ~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l 629 (714)
..|.|.|.++.+..+++||||+|||||||+++++++..... .++++||||+|+++ |.+|.+||+++.+.+..+++
T Consensus 100 ~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 174 (247)
T cd06184 100 SAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGP----GRPVTFIHAARNSA-VHAFRDELEELAARLPNLKL 174 (247)
T ss_pred EcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCC----CCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeEE
Confidence 88889999886556899999999999999999999876422 26899999999997 89999999999887677789
Q ss_pred EEEEecCCCC--------cccccchhhhchHHHHh-cccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 630 IVAFSREGPT--------KEYVQHKMMEKSSDIWN-MLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 630 ~~a~Sr~~~~--------k~yVq~~l~e~~~~l~~-~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
++++|++... .++++.. .+.+ ....+..||+||| ++|++++.+.|.+.
T Consensus 175 ~~~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~ 231 (247)
T cd06184 175 HVFYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGP-VPFMQAVREGLKAL 231 (247)
T ss_pred EEEECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 9999986432 2333321 1222 2245789999999 89999999988653
|
Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. |
| >cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-22 Score=206.79 Aligned_cols=185 Identities=18% Similarity=0.295 Sum_probs=136.9
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v 551 (714)
..+|||+.+.+| ....|+|||+|.|. ..+.++|+|+.. ..|.+|.||. ++.+|+ .+.|..
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~------~v~i~g 91 (231)
T cd06215 28 YKPGQFLTLELEIDGETVYRAYTLSSSPS-RPDSLSITVKRV---------PGGLVSNWLHDNLKVGD------ELWASG 91 (231)
T ss_pred cCCCCeEEEEEecCCCeEEEeeecccCCC-CCCcEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEEc
Confidence 457888865444 22369999999986 346799888643 3589999997 576665 577888
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.++.....++||||+|||||||++++++....+. .++++||||+|+.+ |++|.+||+++.++...+++++
T Consensus 92 P~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~ 166 (231)
T cd06215 92 PAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRP----DADIVFIHSARSPA-DIIFADELEELARRHPNFRLHL 166 (231)
T ss_pred CcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC----CCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEEE
Confidence 889999875556899999999999999999999876432 26799999999997 9999999999998766678888
Q ss_pred EEecCCCC-cccccchhhhchHHHHhcc--cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 632 AFSREGPT-KEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 632 a~Sr~~~~-k~yVq~~l~e~~~~l~~~i--~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+.+++... ..+.++++.+. .+.+.+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 167 ~~~~~~~~~~~~~~g~~~~~--~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~ 219 (231)
T cd06215 167 ILEQPAPGAWGGYRGRLNAE--LLALLVPDLKERTVFVCGP-AGFMKAVKSLLAEL 219 (231)
T ss_pred EEccCCCCcccccCCcCCHH--HHHHhcCCccCCeEEEECC-HHHHHHHHHHHHHc
Confidence 88875432 22223333221 112222 13468999999 99999999888653
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr |
| >PRK12359 flavodoxin FldB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-22 Score=193.12 Aligned_cols=144 Identities=19% Similarity=0.347 Sum_probs=120.1
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
|++.|+|+|+|||||.+|++|++.+.. ..++++++++++. +++..++.+||++||||.|++|+++..|+.
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~----~~v~v~~i~~~~~------~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~ 70 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGE----ELVDLHNLKDDPP------KLMEQYDVLILGIPTWDFGEIQEDWEAVWD 70 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCC----CeEEEEEcccCCh------hHHccCCEEEEEecccCCCcCcHHHHHHHH
Confidence 579999999999999999999998732 2368888888775 457899999999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCC-ch-hHHHHHHHHHHHHHHHcCCccccc-----------------------ccccc
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRLVP-----------------------VGLGD 239 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds-~Y-~~f~~~~k~ld~~L~~lGa~~~~~-----------------------~g~gD 239 (714)
.|. ...|+|+++||||+||+ .| ++||.+++.++++|.+.||+.+.. +.+.+
T Consensus 71 ~l~----~~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD~ 146 (172)
T PRK12359 71 QLD----DLNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALDE 146 (172)
T ss_pred HHh----hCCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEcC
Confidence 986 45699999999999998 58 899999999999999999985421 22222
Q ss_pred CCCC--chhhHHHHHHHHHHHHHhh
Q 005109 240 DDQC--IEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 240 ~~~~--~e~~f~~W~~~l~~~L~~~ 262 (714)
+++. +++++++|.++|.+++..+
T Consensus 147 ~nq~~~t~~ri~~W~~~~~~~~~~~ 171 (172)
T PRK12359 147 VNQYDLSDERIQQWCEQILLEMAEL 171 (172)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHhh
Confidence 3332 6889999999998887643
|
|
| >cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-22 Score=209.75 Aligned_cols=181 Identities=21% Similarity=0.331 Sum_probs=140.2
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecC
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 554 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~ 554 (714)
+..+|||+.+.+|....|+|||+|+|.. .+.++|+|+. .|..|+||.++.+|+ .+.+..|.|
T Consensus 27 ~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G~------~v~i~gP~G 88 (253)
T cd06221 27 TFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPGD------TVGLRGPFG 88 (253)
T ss_pred CcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCCC------EEEEECCcC
Confidence 4457899876556555699999999863 4789988853 388999999877665 567888877
Q ss_pred C-ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 555 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 555 ~-F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
. |.++....+|+||||+||||||++++++++.+... ..++++|||+.|+.+ |++|++||+++.+. ..+++.+++
T Consensus 89 ~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~---~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~~ 163 (253)
T cd06221 89 NGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE---DYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILTV 163 (253)
T ss_pred CCcccccccCCeEEEEccccchhHHHHHHHHHHhccc---cCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEEe
Confidence 7 66554356899999999999999999999987532 126899999999998 99999999999987 556788888
Q ss_pred ecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
|++.. ..+++++.+.+.. ....+..||+||| +.|++++.+.|.+.
T Consensus 164 s~~~~~~~~~~g~v~~~l~~~~-----~~~~~~~vyicGp-~~mv~~~~~~L~~~ 212 (253)
T cd06221 164 DRAEEGWTGNVGLVTDLLPELT-----LDPDNTVAIVCGP-PIMMRFVAKELLKL 212 (253)
T ss_pred CCCCCCccCCccccchhHHhcC-----CCcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 87542 3466766554431 1125689999999 99999999988764
|
Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. |
| >cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=208.81 Aligned_cols=181 Identities=23% Similarity=0.357 Sum_probs=138.6
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v 551 (714)
..+|||+.+.+| ...+|+|||+|.|....+.++|+|+.+ .+|.+|.||++ +.+|+ .+.+..
T Consensus 46 ~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~g 110 (243)
T cd06216 46 HRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGD------VVELSQ 110 (243)
T ss_pred cCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEEC
Confidence 356899865443 234799999998852247899988743 35889999986 66665 567888
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.++.+..+++||||+||||||+++++++..... ..++++||||+|+.+ |.+|.+||+++.+++..+++++
T Consensus 111 P~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 185 (243)
T cd06216 111 PQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG----PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHL 185 (243)
T ss_pred CceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC----CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEE
Confidence 88999998765689999999999999999999987643 226899999999997 9999999999987777778888
Q ss_pred EEecCCCCcccccchhhhchHHHHhcc--cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 632 AFSREGPTKEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 632 a~Sr~~~~k~yVq~~l~e~~~~l~~~i--~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.+|++ ..++++...+. .+.+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 186 ~~s~~-~~~g~~~~~~l------~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~~ 232 (243)
T cd06216 186 LYTRE-ELDGRLSAAHL------DAVVPDLADRQVYACGP-PGFLDAAEELLEAA 232 (243)
T ss_pred EEcCC-ccCCCCCHHHH------HHhccCcccCeEEEECC-HHHHHHHHHHHHHC
Confidence 88876 23455543222 1121 23579999999 89999999988764
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for |
| >cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-22 Score=202.65 Aligned_cols=177 Identities=18% Similarity=0.264 Sum_probs=132.1
Q ss_pred CCChHHHHHHhcCC----CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE
Q 005109 475 KPPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p~----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~ 550 (714)
...+|||+.+.++. ...|+|||+|+|. .+.++|+|+.+ ...|..|.||.++.+|+ .+.+.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~--------~~~g~~s~~l~~l~~G~------~v~i~ 90 (218)
T cd06196 27 DFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSY--------PDHDGVTEQLGRLQPGD------TLLIE 90 (218)
T ss_pred CCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEc--------CCCCcHhHHHHhCCCCC------EEEEE
Confidence 35678988654442 3579999999986 37899888743 11366799999988876 47788
Q ss_pred EecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEE
Q 005109 551 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630 (714)
Q Consensus 551 v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~ 630 (714)
.|.|.|.++ .|+||||+|||||||+++++++..... ..+++|+||+|+.+ |++|.+||++|.. ++++
T Consensus 91 gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~ 157 (218)
T cd06196 91 DPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKGK----LEGNTLIFANKTEK-DIILKDELEKMLG----LKFI 157 (218)
T ss_pred CCccceEec----CceEEEecCCCcChHHHHHHHHHhCCC----CceEEEEEecCCHH-HHhhHHHHHHhhc----ceEE
Confidence 888988753 579999999999999999999886432 25789999999997 9999999999852 3567
Q ss_pred EEEecCCCCcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 631 VAFSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 631 ~a~Sr~~~~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.++||++. ..|.++++.+ +.+.+++ ..++.+|+||| ++|++++.+.|.+.
T Consensus 158 ~~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 208 (218)
T cd06196 158 NVVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKEL 208 (218)
T ss_pred EEEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 78888653 3455555532 1222333 23578999999 89999999988654
|
The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. |
| >TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-22 Score=215.63 Aligned_cols=187 Identities=19% Similarity=0.332 Sum_probs=137.1
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEE
Q 005109 475 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~ 550 (714)
...+|||+.+.+| ....|+|||+|+|. .+.++|+|+.+ ..|.+|+||. ++.+|+ .+.+.
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~---------~~G~~S~~l~~~l~~Gd------~v~v~ 94 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKI---------PGGLFSTWANDEIRPGD------TLEVM 94 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEe---------CCCcchHHHHhcCCCCC------EEEEe
Confidence 3457999865443 22369999999984 47899988754 3589999997 566655 56777
Q ss_pred EecCCccCCCCC--CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-Cc
Q 005109 551 VRQSNFKLPADA--KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LS 627 (714)
Q Consensus 551 v~~~~F~lp~~~--~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~-~~ 627 (714)
.|.|.|.++.+. .+++||||+|||||||++|++++..... .++++||||+|+.+ |++|.+||+++++... .+
T Consensus 95 gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~ 169 (352)
T TIGR02160 95 APQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP----RSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRF 169 (352)
T ss_pred CCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC----CceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcE
Confidence 788999886542 3789999999999999999999876432 26899999999997 9999999999987654 46
Q ss_pred EEEEEEecCCCCcccccchhhh-chH-HHHhcc--cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 628 QLIVAFSREGPTKEYVQHKMME-KSS-DIWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 628 ~l~~a~Sr~~~~k~yVq~~l~e-~~~-~l~~~i--~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++.++|++.....+.+.++.. ... .+.++. .....+|+||| ++|++++++.|.+.
T Consensus 170 ~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 229 (352)
T TIGR02160 170 HLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGL 229 (352)
T ss_pred EEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 7888899865432233333311 111 111121 23468999999 99999999999765
|
Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. |
| >cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-22 Score=203.08 Aligned_cols=183 Identities=21% Similarity=0.330 Sum_probs=137.2
Q ss_pred CChHHHHHHhcC--CC--cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEE
Q 005109 476 PPLGVFFAAIVP--RL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 550 (714)
Q Consensus 476 ~p~~~~l~~i~p--~l--~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~ 550 (714)
..+|||+.+.+| .- ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.+ +.+|+ .+.+.
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd------~v~i~ 94 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRV---------PGGEVSPYLHDEVKVGD------LLEVR 94 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEe
Confidence 346899865544 21 2499999999863 46899988643 35889999986 55654 57788
Q ss_pred EecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEE
Q 005109 551 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630 (714)
Q Consensus 551 v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~ 630 (714)
.|.|.|.++....++++|||+||||||+++++++...... .++++|+||+|+.+ |.+|.+||.++.++...++++
T Consensus 95 gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~ 169 (235)
T cd06217 95 GPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW----PVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVT 169 (235)
T ss_pred CCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC----CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEE
Confidence 8888898765446899999999999999999999876532 26899999999997 999999999999876667888
Q ss_pred EEEecCCC-----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 631 VAFSREGP-----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 631 ~a~Sr~~~-----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.++||+.. .++++...+.+. +... ..+..+|+||| ++|+++|.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~~~g~~~~~~l~~---~~~~-~~~~~v~icGp-~~m~~~v~~~l~~~ 223 (235)
T cd06217 170 EALTRAAPADWLGPAGRITADLIAE---LVPP-LAGRRVYVCGP-PAFVEAATRLLLEL 223 (235)
T ss_pred EEeCCCCCCCcCCcCcEeCHHHHHh---hCCC-ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 88898621 234443332211 1111 25689999999 99999999988764
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form |
| >cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=202.48 Aligned_cols=187 Identities=22% Similarity=0.368 Sum_probs=137.7
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEE
Q 005109 475 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~ 550 (714)
...+|||+.+.+| ...+|+|||+|.|.. +.++|.|+.+ ..|.+|.||. ++.+|+ .+.+.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKAGD------TLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCCCC------EEEEe
Confidence 4567999876544 236799999998863 3788887643 4589999997 566655 57788
Q ss_pred EecCCccCCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-CcE
Q 005109 551 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 628 (714)
Q Consensus 551 v~~~~F~lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~-~~~ 628 (714)
.|.|.|.++++ ...++||||+|||||||+++++++..... .++++||||+|+.. |++|.+||+++.+... .++
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP----ASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC----CCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 88899988765 57899999999999999999999876432 26899999999997 9999999999986653 557
Q ss_pred EEEEEecCCCCcccccchhhhc-hHHHH-hcc--cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 629 LIVAFSREGPTKEYVQHKMMEK-SSDIW-NML--SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 629 l~~a~Sr~~~~k~yVq~~l~e~-~~~l~-~~i--~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+..++|+++....+.++++.+. ..... +++ .++..||+||| +.|+++|.+.|.+.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~ 228 (241)
T cd06214 170 VIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLEL 228 (241)
T ss_pred EEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHHc
Confidence 7778887654322222333221 11111 111 34679999999 89999999988654
|
PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and |
| >PTZ00274 cytochrome b5 reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-22 Score=211.69 Aligned_cols=185 Identities=11% Similarity=0.149 Sum_probs=130.3
Q ss_pred CCChHHHHHHhcC-C-----CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceee
Q 005109 475 KPPLGVFFAAIVP-R-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 548 (714)
Q Consensus 475 ~~p~~~~l~~i~p-~-----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~ 548 (714)
...+|||+....+ . ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+++.+|+. +.
T Consensus 81 ~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~---------~~G~~S~~L~~lk~Gd~------v~ 144 (325)
T PTZ00274 81 NLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRK---------KDGLMTNHLFGMHVGDK------LL 144 (325)
T ss_pred CCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEc---------CCCcccHHHhcCCCCCE------EE
Confidence 3457888764323 1 23699999999963 47899998753 56999999999877763 44
Q ss_pred EEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc--CCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-
Q 005109 549 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA- 625 (714)
Q Consensus 549 i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~--~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~- 625 (714)
+..+.+.|.++++..+|+||||+|||||||++|+++.+..+.. .....+++|+||+|+.+ |++|++||+++++...
T Consensus 145 v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~ 223 (325)
T PTZ00274 145 FRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSN 223 (325)
T ss_pred EeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCC
Confidence 5444344444444457999999999999999999998765321 11225899999999997 9999999999988654
Q ss_pred CcEEEEEEecCCC------CcccccchhhhchHHHHhccc-CCcEEEEecCchhhHHHHHHH
Q 005109 626 LSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRT 680 (714)
Q Consensus 626 ~~~l~~a~Sr~~~------~k~yVq~~l~e~~~~l~~~i~-~~~~iyvCGpa~~M~~~V~~~ 680 (714)
.+++++++|++.. ..++|.+.+... +..... ....+|+||| ++|+++|...
T Consensus 224 ~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~---~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 224 RFKVYYTIDQAVEPDKWNHFLGYVTKEMVRR---TMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred cEEEEEEeCCCCcccCCCCCCCccCHHHHHH---hcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 5788888886421 235555443221 111111 2357999999 9999999554
|
|
| >cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-22 Score=200.23 Aligned_cols=177 Identities=21% Similarity=0.283 Sum_probs=132.6
Q ss_pred CChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v 551 (714)
..+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+. .|.+|++|. ++.+|+ .+.+..
T Consensus 23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~G~------~v~i~g 84 (216)
T cd06198 23 HRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKPGT------RVTVEG 84 (216)
T ss_pred cCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCCCC------EEEEEC
Confidence 4578998655453 56899999999863 3689988863 277899999 676665 567888
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.++.. .++++|||+||||||+++++++...... .++++|+||+|+.+ |++|.+||+++.+.. .+++++
T Consensus 85 P~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~~ 157 (216)
T cd06198 85 PYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARGD----ARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLHV 157 (216)
T ss_pred CCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcCC----CceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEEE
Confidence 8899998765 6899999999999999999999876432 26899999999998 999999999998876 556776
Q ss_pred EEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 632 AFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 632 a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
..++.+. .......+.+ .. ....+..+|+||| ++|++++++.|.+.
T Consensus 158 ~~~~~~~-~~~~~~~~~~----~~-~~~~~~~vyicGp-~~m~~~v~~~l~~~ 203 (216)
T cd06198 158 IDSPSDG-RLTLEQLVRA----LV-PDLADADVWFCGP-PGMADALEKGLRAL 203 (216)
T ss_pred EeCCCCc-ccchhhhhhh----cC-CCcCCCeEEEECc-HHHHHHHHHHHHHc
Confidence 6654332 1111111100 01 0134679999999 89999999988763
|
The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. |
| >PRK08221 anaerobic sulfite reductase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=205.40 Aligned_cols=177 Identities=18% Similarity=0.233 Sum_probs=132.2
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCC
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 555 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~ 555 (714)
.-+|||+.+-+|...+|+|||++.+ .++++|+|+. .|.+|+||.++.+|+ .+.|..|.|+
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~Gd------~v~v~gP~G~ 92 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEGD------KLFLRGPYGN 92 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCCC------EEEEECCCCC
Confidence 3579998765676567999999975 3678888752 289999999887766 4667777776
Q ss_pred -ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 556 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 556 -F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
|.++....+|+||||+|||||||+|++++...... ..++++||||+|+.+ |++|++||++|.+.. .++++++
T Consensus 93 ~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~---~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~ 165 (263)
T PRK08221 93 GFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ---EIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLD 165 (263)
T ss_pred CcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc---cCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEec
Confidence 88776556899999999999999999999875321 235899999999997 999999999998753 3455566
Q ss_pred cCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 635 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 635 r~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+... ..+++++.+.+.. ... ..+..+|+||| ++|++++.+.|.+.
T Consensus 166 ~~~~~~~~~~G~v~~~l~~~~---~~~-~~~~~vylCGp-~~mv~~~~~~L~~~ 214 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPELT---LKD-IDNMQVIVVGP-PIMMKFTVLEFLKR 214 (263)
T ss_pred CCCCCCccCccccChhhHhcc---CCC-cCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 5432 2456654433310 000 14678999999 99999999988654
|
|
| >cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=202.34 Aligned_cols=171 Identities=20% Similarity=0.306 Sum_probs=130.0
Q ss_pred CChHHHHHHhcCC----CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p~----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
..+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+.. |.+|+||.++.+|+ .+.|..
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~Gd------~v~i~g 86 (246)
T cd06218 25 AKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAGD------ELDVLG 86 (246)
T ss_pred CCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCCC------EEEEEe
Confidence 4568888665453 35799999998852 47888887532 77899999988765 577888
Q ss_pred ecCC-ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEE
Q 005109 552 RQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630 (714)
Q Consensus 552 ~~~~-F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~ 630 (714)
|.|. |.++. ...++||||+|||||||+++++++...+ ++++||||+|+.+ |.+|++||+++.. ++.
T Consensus 87 P~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~~ 153 (246)
T cd06218 87 PLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAERG------IKVTVLLGFRSAD-DLFLVEEFEALGA-----EVY 153 (246)
T ss_pred cCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhcC------CceEEEEEccchh-hhhhHHHHHhhCC-----cEE
Confidence 8775 77764 5689999999999999999999887622 6899999999998 9999999998842 223
Q ss_pred EEEecCC--CCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 631 VAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 631 ~a~Sr~~--~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+ +++++ ..++|+++.+.+.... ..+..||+||| ++|++++++.|.+.
T Consensus 154 ~-~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp-~~mv~~~~~~L~~~ 202 (246)
T cd06218 154 V-ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGP-EPMLKAVAELAAER 202 (246)
T ss_pred E-EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECC-HHHHHHHHHHHHhc
Confidence 2 23332 2457888766554221 14689999999 89999999999764
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. |
| >KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=204.59 Aligned_cols=141 Identities=31% Similarity=0.580 Sum_probs=121.2
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~ 185 (714)
+-.|||+||||||+++|+.+++++++.. ..++++|++ |.+.| ++ +++++|+++|+-+|+|| +..|+.|
T Consensus 48 ~~~vfy~s~~GtA~~~A~~~~e~~~sld--~~~~llnl~-y~~~d------~p-en~~~~lv~~~~~~~~~--~d~~~~~ 115 (601)
T KOG1160|consen 48 KSKVFYSSLTGTAKKAAKSVHEKLKSLD--ELPKLLNLD-YSDFD------VP-ENALYFLVLPSYDIDPP--LDYFLQW 115 (601)
T ss_pred cceEEEEeccchHHHHHHHHHHHHHhcc--cchhhcCCC-CCccC------CC-cceEEEEEecccCCCCc--HHHHHHH
Confidence 3489999999999999999999998864 447889998 77543 55 77888888888899999 8999999
Q ss_pred HHh-----ccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHH
Q 005109 186 FTE-----KEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 259 (714)
Q Consensus 186 L~~-----~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L 259 (714)
|.. ..+...|++++||||||||+.| ++||..|+++|+++..|||+|++|+|+||.+. ..+++|+..+...|
T Consensus 116 L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~---~~id~W~~~~~~~L 192 (601)
T KOG1160|consen 116 LEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDS---AKIDEWTSLVAETL 192 (601)
T ss_pred HHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCcccccc---ccHHHHHHHHHHHH
Confidence 981 1245679999999999999997 99999999999999999999999999999883 44569999998887
Q ss_pred Hh
Q 005109 260 DN 261 (714)
Q Consensus 260 ~~ 261 (714)
+.
T Consensus 193 k~ 194 (601)
T KOG1160|consen 193 KD 194 (601)
T ss_pred cC
Confidence 64
|
|
| >cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-21 Score=197.92 Aligned_cols=185 Identities=19% Similarity=0.277 Sum_probs=138.5
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
...+|||+.+.+|. ...|+|||+|.+.. .+.++|+|+.+ ..|.+|+||+++.+|+ .+.+..
T Consensus 28 ~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~---------~~G~~s~~l~~~~~G~------~v~i~g 91 (234)
T cd06183 28 GLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIY---------PGGKMSQYLHSLKPGD------TVEIRG 91 (234)
T ss_pred CCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEEC---------CCCcchhHHhcCCCCC------EEEEEC
Confidence 34678988655453 45799999998863 46788887642 3599999999887765 467778
Q ss_pred ecCCccCCCCCC-CCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcC-CCcEE
Q 005109 552 RQSNFKLPADAK-VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 629 (714)
Q Consensus 552 ~~~~F~lp~~~~-~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g-~~~~l 629 (714)
+.|.|.++.+.. .++||||+||||||+++++++...... ...+++||||+|+.+ |.+|.+||+++.+.. ..+++
T Consensus 92 P~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~---~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~ 167 (234)
T cd06183 92 PFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE---DKTKISLLYANRTEE-DILLREELDELAKKHPDRFKV 167 (234)
T ss_pred CccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC---cCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEE
Confidence 889998876554 789999999999999999999876421 136899999999997 999999999998762 45577
Q ss_pred EEEEecCCCC----cccccchhhhchHHHHhc-ccCCcEEEEecCchhhHH-HHHHHHHH
Q 005109 630 IVAFSREGPT----KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMAR-DVHRTLHT 683 (714)
Q Consensus 630 ~~a~Sr~~~~----k~yVq~~l~e~~~~l~~~-i~~~~~iyvCGpa~~M~~-~V~~~L~~ 683 (714)
++++++.+.. .+++++.+.... ... ...+..+|+||| ++|++ ++.+.|.+
T Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~ 223 (234)
T cd06183 168 HYVLSRPPEGWKGGVGFITKEMIKEH---LPPPPSEDTLVLVCGP-PPMIEGAVKGLLKE 223 (234)
T ss_pred EEEEcCCCcCCccccceECHHHHHHh---CCCCCCCCeEEEEECC-HHHHHHHHHHHHHH
Confidence 8888875432 456654432211 110 124678999999 99999 99988864
|
Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH. |
| >COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-21 Score=200.58 Aligned_cols=180 Identities=18% Similarity=0.300 Sum_probs=132.7
Q ss_pred CChHHHHHHhcCCC---cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p~l---~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v 551 (714)
+.+|||+.+-++.- ..|.|||+|+|.. ++.+.|+|++. ..|..|+||+ ++++|+ .+.|..
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~---------~~G~~S~~Lh~~lk~Gd------~l~v~~ 98 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRE---------DGGGGSNWLHDHLKVGD------TLEVSA 98 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEe---------CCCcccHHHHhcCCCCC------EEEEec
Confidence 45788887655533 5799999999974 35788877643 3499999999 677765 577888
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.++..+..|++||++|||||||+||+++....+ . .+++|+|++|+.+ |..|++| +.+.++......+.
T Consensus 99 P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~----~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~ 171 (266)
T COG1018 99 PAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG----P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLG 171 (266)
T ss_pred CCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC----C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEE
Confidence 89999998766779999999999999999999987753 2 5799999999998 9999999 88887766433333
Q ss_pred EEecCCCCcccccchhhhchHHHHhccc-CCcEEEEecCchhhHHHHHHHHHHHH
Q 005109 632 AFSREGPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIV 685 (714)
Q Consensus 632 a~Sr~~~~k~yVq~~l~e~~~~l~~~i~-~~~~iyvCGpa~~M~~~V~~~L~~i~ 685 (714)
.+...+...+|..- ..+...+. .+..+|+||| .+|+++|+..|.++.
T Consensus 172 ~~~~~~~~~g~~~~------~~l~~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g 219 (266)
T COG1018 172 LYTERGKLQGRIDV------SRLLSAAPDGGREVYLCGP-GPFMQAVRLALEALG 219 (266)
T ss_pred EEEecCCccccccH------HHHhccCCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 33321112222221 11111222 2389999999 899999999987664
|
|
| >TIGR02911 sulfite_red_B sulfite reductase, subunit B | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-21 Score=202.36 Aligned_cols=177 Identities=16% Similarity=0.204 Sum_probs=131.7
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCC
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 555 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~ 555 (714)
.-+|||+.+.+|...+|+|||+|.+ .++++|+|+. .|.+|++|.++.+|+ .+.|..|.|+
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~Gd------~v~i~gP~G~ 90 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEGD------NLFLRGPYGN 90 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCCC------EEEEecCCCC
Confidence 4578998766676678999999853 4789988853 289999999887765 4677788776
Q ss_pred -ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 556 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 556 -F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
|.++.+..+|++|||+|||||||+++++++..... ..++++||||+|+.+ |++|.+||++|++.. .+...++
T Consensus 91 ~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~---~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~ 163 (261)
T TIGR02911 91 GFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK---EIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLD 163 (261)
T ss_pred CcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc---cCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEc
Confidence 87776556899999999999999999998765321 226899999999998 999999999998753 2344455
Q ss_pred cCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 635 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 635 r~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
++.. ..+++++.+.+.. +.+ ..+.++|+||| ++|++++.+.|.+.
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKK 212 (261)
T ss_pred CCCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHc
Confidence 4322 3356655443310 001 13578999999 99999999988764
|
Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. |
| >PTZ00319 NADH-cytochrome B5 reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-21 Score=203.80 Aligned_cols=194 Identities=15% Similarity=0.192 Sum_probs=134.6
Q ss_pred CChHHHHHHhcCC-------CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceee
Q 005109 476 PPLGVFFAAIVPR-------LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 548 (714)
Q Consensus 476 ~p~~~~l~~i~p~-------l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~ 548 (714)
..+|||+.+.++. ...|+||++|+|. +++.++|+|+.+...........|.+|+||.++.+|+ .+.
T Consensus 64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~ 136 (300)
T PTZ00319 64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGD------KIE 136 (300)
T ss_pred CccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCC------EEE
Confidence 4578887654432 2469999999985 4578999987652111000123599999998887766 567
Q ss_pred EEEecCCccCCCC---------------CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccch
Q 005109 549 IFVRQSNFKLPAD---------------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 613 (714)
Q Consensus 549 i~v~~~~F~lp~~---------------~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly 613 (714)
+..|.|.|.++.+ ...|++|||+|||||||++++++...... ...+++|+||+|+.+ |.+|
T Consensus 137 i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~---~~~~i~liyg~r~~~-dl~~ 212 (300)
T PTZ00319 137 MRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKE---DRTKVFLVYANQTED-DILL 212 (300)
T ss_pred EEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCC---CCceEEEEEecCCHH-HhhH
Confidence 8888888865422 12589999999999999999999876421 125799999999997 9999
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCCC-----CcccccchhhhchHHHHhc-----ccCCcEEEEecCchhhHH-HHHHHHH
Q 005109 614 EDELNNFVQSGALSQLIVAFSREGP-----TKEYVQHKMMEKSSDIWNM-----LSEGAYLYVCGDAKSMAR-DVHRTLH 682 (714)
Q Consensus 614 ~dEL~~~~~~g~~~~l~~a~Sr~~~-----~k~yVq~~l~e~~~~l~~~-----i~~~~~iyvCGpa~~M~~-~V~~~L~ 682 (714)
.+||++++ ....++++.+.+++.. ..++|+..+.+.. +... ...+..+|+||| ++|++ .+.+.|.
T Consensus 213 ~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~--~~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L~ 288 (300)
T PTZ00319 213 RKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAH--LPVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNLE 288 (300)
T ss_pred HHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhh--cCCccccccccCCeEEEEECC-HHHHHHHHHHHHH
Confidence 99999865 4445678888887422 3466665443321 1100 013478999999 99998 5677775
Q ss_pred HH
Q 005109 683 TI 684 (714)
Q Consensus 683 ~i 684 (714)
+.
T Consensus 289 ~~ 290 (300)
T PTZ00319 289 KI 290 (300)
T ss_pred Hc
Confidence 43
|
|
| >PRK09271 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-20 Score=181.97 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=112.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
|+|+|+|+|+|||||++|+.|++.+...+ ..+.+.++++.+.++. ..++.+++.++|++||||+|.+|+++..|++
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~ 76 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAG--HEVDWVETDVQTLAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIA 76 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCC--CeeEEEeccccccccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHH
Confidence 58999999999999999999999998876 4566777766553221 2345678999999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCch--hHHHHHHHHHHHHHHHcCCccccccccccCCC---CchhhHHHHHHHHHHHH
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPEL 259 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~---~~e~~f~~W~~~l~~~L 259 (714)
+|. ....++++++|||+||+.| ++||.+++.++++|... .+....+... ...+.+.+|..++++.+
T Consensus 77 ~l~----~~~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~~~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 77 ELA----ETIGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKIEQMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred HHH----HHhccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceeeecCCccchhHHHHHHHHHHHHHHh
Confidence 997 2234678999999999999 89999999999999753 2333333221 12478899999988877
|
|
| >cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=189.96 Aligned_cols=172 Identities=20% Similarity=0.272 Sum_probs=127.7
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCcccc-Cccchhhccc-CCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHK-GLCSTWMKNS-LPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~-G~~S~~L~~~-~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|....|+|||+|.|.. .+.+.|+|+.+ .. +.+|.||.+. .+|+ .+.+..|
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~---------~~g~~~s~~l~~~~~~Gd------~v~i~gP 88 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLRE---------PASRGGSRYMHELLRVGD------ELEVSAP 88 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEec---------cCCCchHHHHHhcCCCCC------EEEEcCC
Confidence 3467999876556667899999999863 47899888643 12 3479999764 4454 5778888
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++++ .+|+||||+||||||+++++++..... .+++||||+|+.+ |.+|.+||+++. .. .+.+.
T Consensus 89 ~g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~~------~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~ 156 (211)
T cd06185 89 RNLFPLDEA-ARRHLLIAGGIGITPILSMARALAARG------ADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLH 156 (211)
T ss_pred ccCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhCC------CCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEE
Confidence 899988654 579999999999999999999886522 5799999999987 899999999987 22 34455
Q ss_pred EecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++.. ...++++.+.. +..+..+|+||| +.|++++.+.|.+.
T Consensus 157 ~~~~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~ 198 (211)
T cd06185 157 FDDEG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAAL 198 (211)
T ss_pred ECCCC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 66532 22333322221 224679999999 89999999988664
|
PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal. |
| >PRK06756 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-20 Score=176.13 Aligned_cols=137 Identities=22% Similarity=0.287 Sum_probs=114.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++|+|+|+|+|||||++|+.|++++.+.+ ..++++|+.+... ..++.+++.+||++||||+|.+|+++..|+
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g--~~v~~~~~~~~~~-----~~~~~~~d~vi~gspt~~~g~~p~~~~~fl 73 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETE--NEIEVIDIMDSPE-----ASILEQYDGIILGAYTWGDGDLPDDFLDFY 73 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcC--CeEEEeehhccCC-----HHHHhcCCeEEEEeCCCCCCCCcHHHHHHH
Confidence 478999999999999999999999998765 4567788765432 245788999999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 252 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~ 252 (714)
+.+. ...++++++++||+|++.|.|||.+.+.+.+.|.++|++.+.+.....-. ..++|++.|.
T Consensus 74 ~~l~----~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~-p~~~d~~~~~ 137 (148)
T PRK06756 74 DAMD----SIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELT-PEDEDVEKCL 137 (148)
T ss_pred HHHh----cCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecC-CCHHHHHHHH
Confidence 9985 34589999999999999999999999999999999999998876554332 2366665554
|
|
| >cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=192.35 Aligned_cols=147 Identities=19% Similarity=0.302 Sum_probs=109.3
Q ss_pred ccccccCCCCCCC--CCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCC---CCCCC
Q 005109 491 PRYYSISSSPRVA--PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVP 565 (714)
Q Consensus 491 pR~YSIsSsp~~~--~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~---~~~~p 565 (714)
.|+|||||+|..+ .++++|+|+. .|.+|+||.+...... ..+..+.+..+.|.|.++. +..++
T Consensus 60 ~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~~~~~~-~~G~~v~v~gP~G~f~~~~~~~~~~~~ 127 (220)
T cd06197 60 VRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQVARRLR-EQGLEVPVLGVGGEFTLSLPGEGAERK 127 (220)
T ss_pred eeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHhhhccc-CCCceEEEEecCCcccCCcccccCCce
Confidence 4999999999743 2678887753 2899999988654210 0112678888899999875 34578
Q ss_pred eEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccc
Q 005109 566 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQH 645 (714)
Q Consensus 566 iImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~ 645 (714)
+||||+|||||||+++++++..... ...+++|+||+|+.+ |.+|.+||+++... ...+.. ++
T Consensus 128 illIagG~GItP~~sil~~l~~~~~---~~~~v~l~~~~r~~~-~~~~~~el~~~~~~--~~~~~~-~~----------- 189 (220)
T cd06197 128 MVWIAGGVGITPFLAMLRAILSSRN---TTWDITLLWSLREDD-LPLVMDTLVRFPGL--PVSTTL-FI----------- 189 (220)
T ss_pred EEEEecccchhhHHHHHHHHHhccc---CCCcEEEEEEecchh-hHHHHHHHHhccCC--ceEEEE-EE-----------
Confidence 9999999999999999998875321 236899999999998 99999999876531 111111 11
Q ss_pred hhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 646 KMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 646 ~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
.+.||+||| ++|+++|.+.+.+
T Consensus 190 ---------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 190 ---------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred ---------------eccEEEECc-HHHHHHHHHHhhh
Confidence 116999999 9999999888764
|
Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity |
| >TIGR01752 flav_long flavodoxin, long chain | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=177.59 Aligned_cols=140 Identities=27% Similarity=0.431 Sum_probs=115.2
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~ 185 (714)
+|.|+|+|+|||||++|++|++.+.. ..++++|+.+.+. .++.+++.+||++||||.|++|+++..|++.
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~----~~~~i~~~~~~~~------~~l~~~d~ii~gspty~~g~~p~~~~~fl~~ 70 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE----DDVDVFNIAKASK------EDLNAYDKLILGTPTWGVGELQEDWEDFLPT 70 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEcccCCH------hHHhhCCEEEEEecCCCCCcCcHHHHHHHHH
Confidence 48999999999999999999999863 2367888877653 3577899999999999999999999999998
Q ss_pred HHhccCCCccCCceEEEEeccCC-ch-hHHHHHHHHHHHHHHHcCCcccccc----------------------ccccCC
Q 005109 186 FTEKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRLVPV----------------------GLGDDD 241 (714)
Q Consensus 186 L~~~~~~~~l~~~~~aVFGlGds-~Y-~~f~~~~k~ld~~L~~lGa~~~~~~----------------------g~gD~~ 241 (714)
|. ...++++++++||+||+ .| ++||.+.+.+++.|++.|++.+... .++.++
T Consensus 71 l~----~~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~~ 146 (167)
T TIGR01752 71 LE----ELDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDN 146 (167)
T ss_pred hh----cCCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEEecCCC
Confidence 85 45688999999999998 47 6999999999999999999977643 112222
Q ss_pred C--CchhhHHHHHHHHHHHH
Q 005109 242 Q--CIEDDFSAWRELVWPEL 259 (714)
Q Consensus 242 ~--~~e~~f~~W~~~l~~~L 259 (714)
+ -.++.+..|.++|.+++
T Consensus 147 ~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 147 QPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred chhhhHHHHHHHHHHHHHhh
Confidence 2 25778899998887654
|
Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. |
| >PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-20 Score=193.79 Aligned_cols=167 Identities=23% Similarity=0.296 Sum_probs=127.7
Q ss_pred CCChHHHHHHhcCCC---cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 475 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l---~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
...+|||+.+.+|.. .+|+|||+|+| .+.++|+|+. .|.+|+||.++.+|+ .+.|..
T Consensus 31 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~G~------~v~i~g 90 (250)
T PRK00054 31 DMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKEGD------ELDIRG 90 (250)
T ss_pred CCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCCCC------EEEEEc
Confidence 346789986554543 58999999998 3788988763 288999999887765 577888
Q ss_pred ecCC-ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEE
Q 005109 552 RQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630 (714)
Q Consensus 552 ~~~~-F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~ 630 (714)
|.|. |.++. ..+|+||||+|||||||++++++....+ .+++|+|++|+.+ |++|.+||+++.+ ++
T Consensus 91 P~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~~------~~ 156 (250)
T PRK00054 91 PLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG------VEVTTVLGARTKD-EVIFEEEFAKVGD------VY 156 (250)
T ss_pred ccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC------CcEEEEEEcCCHH-HhhhHHHHHhcCC------EE
Confidence 8775 88764 4579999999999999999999987532 4789999999997 9999999998431 22
Q ss_pred EEEecCC--CCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 631 VAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 631 ~a~Sr~~--~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+. ++++ ..++||++.+.+.. ....+||+||| +.|++++.+.|.+.
T Consensus 157 ~~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~ 203 (250)
T PRK00054 157 VT-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEK 203 (250)
T ss_pred EE-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 22 2333 24578887665431 23468999999 99999999988763
|
|
| >TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-20 Score=173.70 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=103.3
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeE-EecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFK-VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|+++|+|+|+|||||++|+.|++.+...+ ..++ +.++.++... ..++.+++.+||++||||.|.+|+++..|+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~----~~~~~~~d~iilgs~t~~~g~~p~~~~~fl 74 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDG--HEVDILHRIGTLADA----PLDPENYDLVFLGTWTWERGRTPDEMKDFI 74 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCC--eeEEecccccccccC----cCChhhCCEEEEEcCeeCCCcCCHHHHHHH
Confidence 47999999999999999999999998765 3344 4555543211 124567899999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCch--hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 255 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l 255 (714)
+++. .++++|+|||+||+.| ++||.++++++++|.+++..--+....++ ....+.+..|.+++
T Consensus 75 ~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~~~~~i~~~~~~--~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 75 AELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSHPVLKIEQMPHG--EQDGRAIYDWLEGV 139 (140)
T ss_pred HHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcCCceeEecCCcc--cccHHHHHHHHHHh
Confidence 9985 2679999999999999 79999999999999765211111111111 12356678998875
|
This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation. |
| >COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-20 Score=190.61 Aligned_cols=177 Identities=22% Similarity=0.313 Sum_probs=141.4
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecC
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 554 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~ 554 (714)
...+|||+.+..|....|+|||+|.+.. .+.++|.+++. ..|.+|.+++.+.+++ .+.+.+|.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~---------~~G~~T~~i~~~k~gd------~i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVY---------EVGKVTKYIFGLKEGD------KIRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEE---------eCChHHHHHhhccCCC------EEEEEcCCC
Confidence 3678999988878888999999999873 46666666543 4599999999998776 467888888
Q ss_pred CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 555 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 555 ~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
++.+.++..+|+++||+|||+||+++++++....+ ...+++++||.|++. |.++.+||+++... +++++.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~----~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG----DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHhcC----CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 87777666788999999999999999999988743 236899999999998 99999999999875 4555555
Q ss_pred cCCC--Ccccc-cchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 635 REGP--TKEYV-QHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 635 r~~~--~k~yV-q~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
++. .+++| ++.+.+... .+...+|+||| +.|++++.+.+.+-
T Consensus 170 -~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~ 214 (252)
T COG0543 170 -DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEY 214 (252)
T ss_pred -CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhc
Confidence 332 57888 666654311 14689999999 99999999888764
|
|
| >TIGR01753 flav_short flavodoxin, short chain | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=169.29 Aligned_cols=120 Identities=24% Similarity=0.329 Sum_probs=105.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCC-chHHHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARFYKW 185 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p-dna~~F~~~ 185 (714)
|+|+|+|+||||+++|+.|++.+...+ ..++++++.+.+. .++.+++.+||++|||+.|.+| +++..|+++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g--~~v~~~~~~~~~~------~~l~~~d~iilgspty~~g~~p~~~~~~f~~~ 72 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAG--AEVDLLEVADADA------EDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEE 72 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcC--CeEEEEEcccCCH------HHHhcCCEEEEEcCCCCCCCCCcchHHHHHHH
Confidence 579999999999999999999998765 5678888887764 3577899999999999999999 999999999
Q ss_pred HHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccc
Q 005109 186 FTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 239 (714)
Q Consensus 186 L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD 239 (714)
|. ...+++++++|||+|++.|+ ||.+++.++++|+++|++++.+....+
T Consensus 73 l~----~~~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~ 121 (140)
T TIGR01753 73 LE----DIDLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVD 121 (140)
T ss_pred hh----hCCCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeee
Confidence 96 33578999999999999998 999999999999999999998754433
|
Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction. |
| >cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=187.34 Aligned_cols=165 Identities=22% Similarity=0.283 Sum_probs=123.4
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecC
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 554 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~ 554 (714)
..-+|||+.+.+|....|+|||+|+| +.++|+|+. .|.+|+||.++.+|+ .+.+..|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~Gd------~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEGD------KLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCCC------EEEEECcCC
Confidence 34579998765565567999999997 578887752 288999999977765 567778877
Q ss_pred C-ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 555 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 555 ~-F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
+ |.++ .+|+||||+|||||||++++++.... ++++||||+|+.+ |++|.+||++. . ++.+..
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~-------~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA-------ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHhc-------CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 7 8775 57999999999999999999987652 5799999999997 99999999972 1 233332
Q ss_pred ecC-CCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SRE-GPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~-~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+.. ....+++++.+.+.. ......||+||| ++|++++.+.|.+.
T Consensus 145 ~~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~ 189 (233)
T cd06220 145 DDGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDER 189 (233)
T ss_pred eCCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhc
Confidence 211 113467766544321 123468999999 99999999998764
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. |
| >PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.8e-20 Score=194.09 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=125.5
Q ss_pred CChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCcee-eEEEec
Q 005109 476 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v-~i~v~~ 553 (714)
.-+|||+.+-++. ..+|+|||+|++. +.+.++|+|+.+ |..|++|.++.+|+ .+ .|..|.
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~-~~~~i~l~vk~~-----------G~~T~~L~~l~~Gd------~v~~i~GP~ 89 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDR-EKGTITIVFQAV-----------GKSTRKLAELKEGD------SILDVVGPL 89 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcC-CCCEEEEEEEeC-----------CcHHHHHhcCCCCC------EEeeEEcCC
Confidence 3578998654443 3468999999875 347899887642 88999999887776 46 588888
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|+|..... .+|+||||+|+||||+++++++....+ .+++||||+|+.+ |.+|.+||+++... +++ .
T Consensus 90 G~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~ 155 (281)
T PRK06222 90 GKPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKEAG------NKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-T 155 (281)
T ss_pred CCCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHHCC------CeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-E
Confidence 88655433 579999999999999999999876532 4799999999997 99999999987642 222 2
Q ss_pred ecCCC--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+.++. .+++|++.+.+. .........||+||| ++|+++|.+.|.+.
T Consensus 156 ~~d~~~g~~G~v~~~l~~~----~~~~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (281)
T PRK06222 156 TDDGSYGRKGFVTDVLKEL----LESGKKVDRVVAIGP-VIMMKFVAELTKPY 203 (281)
T ss_pred cCCCCcCcccchHHHHHHH----hhcCCCCcEEEEECC-HHHHHHHHHHHHhc
Confidence 33332 456777655432 111112457999999 99999999988654
|
|
| >cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=187.94 Aligned_cols=172 Identities=15% Similarity=0.112 Sum_probs=125.7
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
..+|||+.+.+| ....|+|||+|.|.. .++++|+|+. .|..|+||.++.+|+ .+.|..|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~G~------~l~i~gP 86 (243)
T cd06192 25 FRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKPGE------KLDVMGP 86 (243)
T ss_pred CCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCCCC------EEEEEcc
Confidence 356888865443 445799999999853 4788887753 388999999887765 5677788
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|+|.+..+..++++|||+|||||||++++++....+ .+++||||+|+.+ |.+|.+||+++. . ..+.
T Consensus 87 ~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~~ 153 (243)
T cd06192 87 LGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG------NKVTVLAGAKKAK-EEFLDEYFELPA----D--VEIW 153 (243)
T ss_pred CCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC------CeEEEEEecCcHH-HHHHHHHHHhhc----C--eEEE
Confidence 8877655444679999999999999999999987532 5899999999998 999999998872 1 2223
Q ss_pred EecCCC--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005109 633 FSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 685 (714)
Q Consensus 633 ~Sr~~~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~ 685 (714)
.++++. ..+++++... ... ...+..+|+||| ++|++++++.|.+..
T Consensus 154 ~~~~~~~~~~g~v~~~~~-----~~~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 154 TTDDGELGLEGKVTDSDK-----PIP-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred EecCCCCccceeechhhh-----hhh-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 344432 3345544311 111 123468999999 999999999998764
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi |
| >COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=182.59 Aligned_cols=184 Identities=18% Similarity=0.329 Sum_probs=147.1
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEEEe
Q 005109 491 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 570 (714)
Q Consensus 491 pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piImIa 570 (714)
-|.||+||-|.+ .+.|.+-|++-..+......+.|.||+|+.++++|+ ++.|.+|.|.|... +.++|+|+|+
T Consensus 211 ~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGD------KvtisGPfGEfFaK-dtdaemvFig 282 (410)
T COG2871 211 IRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGD------KVTISGPFGEFFAK-DTDAEMVFIG 282 (410)
T ss_pred HHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCC------eEEEeccchhhhhc-cCCCceEEEe
Confidence 489999999974 478888777653333344678899999999999987 57899999998865 4579999999
Q ss_pred cCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCC------ccccc
Q 005109 571 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT------KEYVQ 644 (714)
Q Consensus 571 ~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~------k~yVq 644 (714)
||.|.||+||.+-+.+.+... .+++.+.||+|+.. +.+|++|.++++++.++|+.++|+|.+.++ .+++.
T Consensus 283 GGAGmapmRSHIfDqL~rlhS---kRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFih 358 (410)
T COG2871 283 GGAGMAPMRSHIFDQLKRLHS---KRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFIH 358 (410)
T ss_pred cCcCcCchHHHHHHHHHhhcc---cceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHHH
Confidence 999999999999888876644 37899999999998 999999999999999999999999987553 23444
Q ss_pred chhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhC
Q 005109 645 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQG 689 (714)
Q Consensus 645 ~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~ 689 (714)
..+.++ .+.++- .++..+|+||| +-|..+|.++|.....+..
T Consensus 359 nv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~e 401 (410)
T COG2871 359 NVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVERE 401 (410)
T ss_pred HHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCcccc
Confidence 444443 223332 56889999999 8898899888888765543
|
|
| >cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-19 Score=187.11 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=124.7
Q ss_pred CChHHHHHHhcC-CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCcee-eEEEec
Q 005109 476 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p-~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v-~i~v~~ 553 (714)
..+|||+.+.++ ....|+|||+|.|. +.++++|+|+. .|..|.+|.++.+|+ .+ .+..|.
T Consensus 27 ~~pGQf~~l~~~~~~~~~pySi~s~~~-~~~~~~~~vk~-----------~G~~t~~l~~l~~G~------~v~~i~gP~ 88 (248)
T cd06219 27 AKPGQFVIVRADEKGERIPLTIADWDP-EKGTITIVVQV-----------VGKSTRELATLEEGD------KIHDVVGPL 88 (248)
T ss_pred CCCCcEEEEEcCCCCCccceEeEEEcC-CCCEEEEEEEe-----------CCchHHHHHhcCCCC------EeeeeecCC
Confidence 457898765333 23569999999875 34788888753 278899998887765 45 477788
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.+..+ .+|+||||+||||||+++++++....+ .+++||||+|+.+ |++|.+||+++.++ ++++
T Consensus 89 G~~~~~~~-~~~~lliagG~GiaP~~~~l~~~~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~- 154 (248)
T cd06219 89 GKPSEIEN-YGTVVFVGGGVGIAPIYPIAKALKEAG------NRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT- 154 (248)
T ss_pred CCCeecCC-CCeEEEEeCcccHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 88765433 579999999999999999999976532 5799999999997 99999999998643 2222
Q ss_pred ecCCC--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 634 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 634 Sr~~~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
+++.. ..+|+++.+.+.. .+. .....||+||| ++|++.+.+.|.+
T Consensus 155 ~~~~~~~~~g~v~~~l~~~~---~~~-~~~~~vyiCGP-~~m~~~~~~~l~~ 201 (248)
T cd06219 155 TDDGSYGEKGFVTDPLKELI---ESG-EKVDLVIAIGP-PIMMKAVSELTRP 201 (248)
T ss_pred eCCCCCCccccchHHHHHHH---hcc-CCccEEEEECC-HHHHHHHHHHHHH
Confidence 44322 3467766554321 111 23458999999 9999999998864
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD, |
| >PRK05802 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-19 Score=194.55 Aligned_cols=169 Identities=11% Similarity=0.082 Sum_probs=121.8
Q ss_pred ChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEec
Q 005109 477 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 477 p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~ 553 (714)
-+|||+.+-.| ....|+|||+|+|. ..+.++|+|+. .|..|++|.++.+|+ .+.|.+|.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~-~~g~l~l~ik~-----------~G~~T~~L~~l~~Gd------~l~v~GP~ 157 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADT-EENIIKVAIEI-----------RGVKTKKIAKLNKGD------EILLRGPY 157 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCC-CCCEEEEEEEe-----------cChhHHHHhcCCCCC------EEEEeCCC
Confidence 46888854433 23459999999986 35789988864 389999999888876 46677775
Q ss_pred --CCccCC---CCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcE
Q 005109 554 --SNFKLP---ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 628 (714)
Q Consensus 554 --~~F~lp---~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~ 628 (714)
|.|.++ ....+++++||+|+||||++++++++...+ .+++||||+|+++ |.+|.+||+++..+..+++
T Consensus 158 GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~------~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~~ 230 (320)
T PRK05802 158 WNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG------NKIIVIIDKGPFK-NNFIKEYLELYNIEIIELN 230 (320)
T ss_pred CcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC------CcEEEEEeCCCHH-HHHHHHHHHHhhCceEEEE
Confidence 337653 234568999999999999999999887643 4799999999997 9999999999865422211
Q ss_pred EEEEEecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 629 LIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 629 l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+..++. .+++|++.+.+. +...||+||| +.|++.|.+.|.+.
T Consensus 231 ----~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 231 ----LLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred ----ecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 112321 133444333221 2367999999 99999999988764
|
|
| >PLN02252 nitrate reductase [NADPH] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-19 Score=211.74 Aligned_cols=194 Identities=15% Similarity=0.199 Sum_probs=137.3
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
.++|||+.+.++ ....|+|||+|.+.. .+.++|+|+++...........|.+|+||.++.+|+ .+.|..|
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd------~V~V~GP 737 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGD------TIDVKGP 737 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCC------EEEEecC
Confidence 467888754332 234799999999863 478999998653211111124599999999888776 4667777
Q ss_pred cCCc--------cCCCC--CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 553 QSNF--------KLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 553 ~~~F--------~lp~~--~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.|.| .++.. ..++++|||+|||||||++++++++.... ...+++||||+|+.+ |++|++||+++++
T Consensus 738 ~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~---d~t~i~Liyg~Rt~~-Dil~~eEL~~la~ 813 (888)
T PLN02252 738 LGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPE---DKTEMSLVYANRTED-DILLREELDRWAA 813 (888)
T ss_pred ccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccC---CCCcEEEEEEECCHH-HhhHHHHHHHHHH
Confidence 6665 44422 24799999999999999999999876432 236899999999997 9999999999998
Q ss_pred cC-CCcEEEEEEecCC-C----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHH-HHHHHHHH
Q 005109 623 SG-ALSQLIVAFSREG-P----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHTI 684 (714)
Q Consensus 623 ~g-~~~~l~~a~Sr~~-~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~-V~~~L~~i 684 (714)
+. ..++++.++|++. . .+++|+..+.+. .......+..+|+||| ++|++. +...|.++
T Consensus 814 ~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~---~l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~~ 878 (888)
T PLN02252 814 EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLRE---HLPEGGDETLALMCGP-PPMIEFACQPNLEKM 878 (888)
T ss_pred hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHH---hcccCCCCeEEEEeCC-HHHHHHHHHHHHHHc
Confidence 75 4568888888743 1 346666544322 1111124578999999 999985 67777553
|
|
| >COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.1e-19 Score=183.55 Aligned_cols=164 Identities=19% Similarity=0.321 Sum_probs=128.1
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEecCCccCCCCCCCCe
Q 005109 488 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSNFKLPADAKVPI 566 (714)
Q Consensus 488 ~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~pi 566 (714)
++.|+|||||++.. ..+++++|+.. |..|+-|++ +++|. ++.+.+|.|.|.......+ -
T Consensus 259 ~~~~HPFTIa~s~~--~sel~FsIK~L-----------GD~Tk~l~dnLk~G~------k~~vdGPYG~F~~~~g~~~-Q 318 (438)
T COG4097 259 RMRPHPFTIACSHE--GSELRFSIKAL-----------GDFTKTLKDNLKVGT------KLEVDGPYGKFDFERGLNT-Q 318 (438)
T ss_pred cCCCCCeeeeeCCC--CceEEEEehhh-----------hhhhHHHHHhccCCc------eEEEecCcceeecccCCcc-c
Confidence 45699999999976 34899988654 999999987 55543 6788899999998754333 8
Q ss_pred EEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccch
Q 005109 567 IMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHK 646 (714)
Q Consensus 567 ImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~ 646 (714)
|.||||+|||||+|+++.....+.+ .++.|||.||+.+ +-+|.+||++++++.+++.+++. |.+.++|+...
T Consensus 319 VWIAGGIGITPFis~l~~l~~~~s~----~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHii---DSs~~g~l~~e 390 (438)
T COG4097 319 VWIAGGIGITPFISMLFTLAERKSD----PPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHII---DSSKDGYLDQE 390 (438)
T ss_pred EEEecCcCcchHHHHHHhhcccccC----CceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEe---cCCCCCccCHH
Confidence 9999999999999999998875433 7899999999998 99999999999998888777763 34456777543
Q ss_pred hhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 647 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 647 l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
..+... + ......||+||| ++|++++++.|++.
T Consensus 391 ~ler~~---~-~~~~~sv~fCGP-~~m~dsL~r~l~~~ 423 (438)
T COG4097 391 DLERYP---D-RPRTRSVFFCGP-IKMMDSLRRDLKKQ 423 (438)
T ss_pred Hhhccc---c-ccCcceEEEEcC-HHHHHHHHHHHHHc
Confidence 333210 0 012348999999 99999999998864
|
|
| >COG0716 FldA Flavodoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-18 Score=162.70 Aligned_cols=143 Identities=24% Similarity=0.331 Sum_probs=114.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++++|+|+|+|||||.+|+.|+++|.+.+ ..+. ++......+ ..+..++.++|+++|||.|+.|+++.+|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~--~~~~-~~~~~~~~~-----~~~~~~d~~~~g~~t~~~ge~~~~~~~f~ 72 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADG--FEVD-IDIRPGIKD-----DLLESYDELLLGTPTWGAGELPDDWYDFI 72 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCC--ceEE-EeecCCcch-----hhhccCCEEEEEeCCCCCCcCCccHHHHH
Confidence 689999999999999999999999998865 2232 222222211 12357899999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhH-HHHHHHHHHHHHHHcC--Cccccccccc--cC--CCCchhhHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQG--AKRLVPVGLG--DD--DQCIEDDFSAWRELVW 256 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lG--a~~~~~~g~g--D~--~~~~e~~f~~W~~~l~ 256 (714)
..+. ...+++++||+||+||+.|.. ||.+...+...|+..| +....+.... |. ....++....|.++++
T Consensus 73 ~~~~----~~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~~ 148 (151)
T COG0716 73 EELE----PIDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQIL 148 (151)
T ss_pred HHhc----ccCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHHH
Confidence 9996 357999999999999999977 9999999999999999 5555555444 22 3357889999999886
Q ss_pred HH
Q 005109 257 PE 258 (714)
Q Consensus 257 ~~ 258 (714)
..
T Consensus 149 ~~ 150 (151)
T COG0716 149 NE 150 (151)
T ss_pred hh
Confidence 53
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=215.27 Aligned_cols=186 Identities=17% Similarity=0.269 Sum_probs=136.5
Q ss_pred CChHHHHHHhcC--C-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p--~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
..+|||+.+..+ . ...|+|||+|.|. ..+.++|+|+ ...|.+|+||+++.+|+. +.|..+
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr----------~~~G~~S~~L~~l~~Gd~------v~v~gp 1010 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILAR----------GDKGTLKEWISALRPGDS------VEMKAC 1010 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEE----------cCCChhHHHHhhCCCCCE------EEEeCC
Confidence 467999965432 1 2359999999996 4577888764 235899999998888764 555543
Q ss_pred cC----------CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 553 QS----------NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 553 ~~----------~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.+ .|.++.+..+|+||||+|||||||++|+++.+.... .....+++||||+|+.+ |++|++||++|++
T Consensus 1011 ~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~-~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~ 1088 (1167)
T PTZ00306 1011 GGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY-VDSIESIRLIYAAEDVS-ELTYRELLESYRK 1088 (1167)
T ss_pred cCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc-cCCCceEEEEEEeCCHH-HhhHHHHHHHHHH
Confidence 22 466666666899999999999999999998876321 01236899999999997 9999999999988
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 623 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 623 ~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+.. .+++++++|++.. ..++|++.+.+. .......+..||+||| ++|++++.+.|.+.
T Consensus 1089 ~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1089 ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGP-PVMQRAVKADLLAL 1151 (1167)
T ss_pred HCCCCEEEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 765 4788899987543 346666543322 1111124578999999 99999999988764
|
|
| >KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-18 Score=175.49 Aligned_cols=179 Identities=16% Similarity=0.257 Sum_probs=139.0
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
.|.|+.+....| ..--|+||..|++.. .+.+++.|+.. .+|.+|.||.+++.|+ .+.+.+|
T Consensus 82 lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd------~ve~rGP 145 (286)
T KOG0534|consen 82 LPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVY---------PKGKMSQHLDSLKIGD------TVEFRGP 145 (286)
T ss_pred cccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEec---------cCCcccHHHhcCCCCC------EEEEecC
Confidence 355666544333 234799999999875 57899887643 3599999999999987 4677778
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-CcEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIV 631 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~-~~~l~~ 631 (714)
.|.|.+++...+.+.|||+|||||||..++|+.+...+ +..+++|+|++++++ |.++++||+.++++.. .++++.
T Consensus 146 ~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~---d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~y 221 (286)
T KOG0534|consen 146 IGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPE---DTTKISLLYANKTED-DILLREELEELASKYPERFKVWY 221 (286)
T ss_pred ccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCC---CCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEEE
Confidence 89998887777899999999999999999999987543 357899999999998 9999999999999877 788888
Q ss_pred EEecCCC----CcccccchhhhchHHHHhcc---cC-CcEEEEecCchhhHHH-HHHHH
Q 005109 632 AFSREGP----TKEYVQHKMMEKSSDIWNML---SE-GAYLYVCGDAKSMARD-VHRTL 681 (714)
Q Consensus 632 a~Sr~~~----~k~yVq~~l~e~~~~l~~~i---~~-~~~iyvCGpa~~M~~~-V~~~L 681 (714)
+.+++.. .++||...+.. +.+ .. ...++|||| ++|... +...|
T Consensus 222 ~v~~~~~~w~~~~g~It~~~i~------~~l~~~~~~~~~~liCGP-p~m~~~~~~~~l 273 (286)
T KOG0534|consen 222 VVDQPPEIWDGSVGFITKDLIK------EHLPPPKEGETLVLICGP-PPMINGAAQGNL 273 (286)
T ss_pred EEcCCcccccCccCccCHHHHH------hhCCCCCCCCeEEEEECC-HHHHhHHHHHHH
Confidence 8888653 45676644332 222 12 478999999 999974 33333
|
|
| >PRK09267 flavodoxin FldA; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=163.82 Aligned_cols=142 Identities=27% Similarity=0.454 Sum_probs=114.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++|+|+|+|+||||+++|+.|++.+.. ..+.++|+.+... .++..++.+||++|||+.|.+|+.+..|+
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~----~~~~~~~~~~~~~------~~l~~~d~vi~g~pt~~~G~~~~~~~~fl 70 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK----DVADVVDIAKASK------EDFEAYDLLILGIPTWGYGELQCDWDDFL 70 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEhhhCCH------hhHhhCCEEEEEecCcCCCCCCHHHHHHH
Confidence 4689999999999999999999999863 2357888877653 35778999999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc---ccc-----------------cCC
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV---GLG-----------------DDD 241 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~~~~~---g~g-----------------D~~ 241 (714)
+.+. ...|+++++++||+||+. | ++||.+.+.+++.|.+.|++.+... |.. |.+
T Consensus 71 ~~~~----~~~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~~ 146 (169)
T PRK09267 71 PELE----EIDFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDED 146 (169)
T ss_pred HHHh----cCCCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecCC
Confidence 9875 345889999999999985 8 8999999999999999998865431 111 111
Q ss_pred C---CchhhHHHHHHHHHHHH
Q 005109 242 Q---CIEDDFSAWRELVWPEL 259 (714)
Q Consensus 242 ~---~~e~~f~~W~~~l~~~L 259 (714)
. -.++.+++|.++|.+++
T Consensus 147 ~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 147 NQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CchhhhHHHHHHHHHHHHHHh
Confidence 1 13678899999987764
|
|
| >PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-17 Score=150.40 Aligned_cols=104 Identities=25% Similarity=0.444 Sum_probs=81.2
Q ss_pred EEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCC-cEEEEEEecCCC----Cccc
Q 005109 568 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL-SQLIVAFSREGP----TKEY 642 (714)
Q Consensus 568 mIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~-~~l~~a~Sr~~~----~k~y 642 (714)
|||+|||||||+||++++.... ..++++||||+|+.+ |++|++||+++.+.... ++++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN----DNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT----CTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHhC----CCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 8999999999999999998763 237999999999998 99999999999987765 333333 43322 4689
Q ss_pred ccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHH
Q 005109 643 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 679 (714)
Q Consensus 643 Vq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~ 679 (714)
|++.+.+.... ......+..||+||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99888654333 222356899999999 999999864
|
Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A .... |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-17 Score=195.57 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=128.2
Q ss_pred CChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCcee-eEEEec
Q 005109 476 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v-~i~v~~ 553 (714)
.-+|||+.+.++. ..+|+|||+|.+. ..+.++|+|+.+ |..|++|+++.+|+ .+ .|.+|.
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~-~~g~i~~~vk~v-----------G~~T~~L~~l~~Gd------~v~~v~GP~ 89 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADADP-EKGTITLVIQEV-----------GLSTTKLCELNEGD------YITDVVGPL 89 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeCC-CCCEEEEEEEEc-----------CchHHHHhcCCCCC------EeCeEeCCC
Confidence 4579998654443 2458999999986 347899888643 88999999988876 46 578888
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|+|..... .++++|||+|+|||||++++++....+ .+++||||.|+.+ |++|.+||++|..+ ++++
T Consensus 90 G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~- 155 (752)
T PRK12778 90 GNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKAAG------NRVITILGGRSKE-LIILEDEMRESSDE-----VIIM- 155 (752)
T ss_pred CCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHHCC------CeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 88876533 478999999999999999999887643 4799999999997 99999999988642 2222
Q ss_pred ecCCC--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 634 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 634 Sr~~~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
+.+++ .+++|++.+.+.. ........||+||| ++|++.|.+.|.+
T Consensus 156 t~dg~~g~~G~v~~~l~~~~----~~~~~~~~vy~CGP-~~M~~~v~~~l~~ 202 (752)
T PRK12778 156 TDDGSYGRKGLVTDGLEEVI----KRETKVDKVFAIGP-AIMMKFVCLLTKK 202 (752)
T ss_pred ECCCCCCCcccHHHHHHHHh----hcCCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 34432 4678877654431 11112357999999 9999999998865
|
|
| >cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=161.72 Aligned_cols=169 Identities=17% Similarity=0.211 Sum_probs=116.7
Q ss_pred CCChHHHHHHhcCCC----cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE
Q 005109 475 KPPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l----~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~ 550 (714)
...+|||+.+.+|.. +.|+|||+|+|....+.++|+|+. ..|..|.++..+........+..+.+.
T Consensus 24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~----------~~G~~t~~~~~~~~~~~~~~~~~v~v~ 93 (210)
T cd06186 24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRA----------KKGFTTRLLRKALKSPGGGVSLKVLVE 93 (210)
T ss_pred ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEe----------cCChHHHHHHHHHhCcCCCceeEEEEE
Confidence 445788876666654 689999999986434789988853 238888877776520000112256677
Q ss_pred EecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcc-cchHHHHHHHHHcCCCcEE
Q 005109 551 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD-YIYEDELNNFVQSGALSQL 629 (714)
Q Consensus 551 v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D-~ly~dEL~~~~~~g~~~~l 629 (714)
+|.|.|..+.....++||||+||||||++++++++...........++.|+|++|+.+ | ..|.+||.+..+-....++
T Consensus 94 GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~~~~~~~~ 172 (210)
T cd06186 94 GPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQELEVDGEI 172 (210)
T ss_pred CCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhhccCCceE
Confidence 7788876444456789999999999999999999887542111236899999999997 6 5899999751111111023
Q ss_pred EEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 630 IVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 630 ~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
.+.+++ +|+||| .+|+++++....+
T Consensus 173 ~i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 173 EIYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred EEEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 333332 999999 8999999887765
|
ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. |
| >cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.7e-17 Score=167.34 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=108.6
Q ss_pred cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEEE
Q 005109 490 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 569 (714)
Q Consensus 490 ~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piImI 569 (714)
..|+|||+|.+. ..++++|+|+.+ ...|.+|+||.++.+|+ .+.+..+.|.|.++. ..++++||
T Consensus 63 ~~R~YSi~~~~~-~~~~l~~~v~~~--------~~~G~~s~~l~~l~~Gd------~v~v~gP~G~~~~~~-~~~~~vli 126 (235)
T cd06193 63 VMRTYTVRRFDP-EAGELDIDFVLH--------GDEGPASRWAASAQPGD------TLGIAGPGGSFLPPP-DADWYLLA 126 (235)
T ss_pred cCcccceeEEcC-CCCEEEEEEEeC--------CCCCchHHHHhhCCCCC------EEEEECCCCCCCCCC-CcceEEEE
Confidence 469999999875 357888887642 11389999999887776 577888899998865 35789999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhh
Q 005109 570 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 649 (714)
Q Consensus 570 a~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e 649 (714)
|+||||||+++++++.... .++++|||+|+.+ |.++.+++. .++++.+.++++. .......+..
T Consensus 127 a~GtGi~p~~~il~~~~~~-------~~~~~~~~~~~~~-d~~~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~ 190 (235)
T cd06193 127 GDETALPAIAAILEELPAD-------ARGTALIEVPDAA-DEQPLPAPA-------GVEVTWLHRGGAE-AGELALLAVR 190 (235)
T ss_pred eccchHHHHHHHHHhCCCC-------CeEEEEEEECCHH-HccccCCCC-------CcEEEEEeCCCCC-cchhHHHHHh
Confidence 9999999999999976431 4799999999985 654433321 2355555443332 1111100000
Q ss_pred chHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 650 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 650 ~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
.......+..+|+||| ++|++.+++.|.+
T Consensus 191 ----~~~~~~~~~~vyicGp-~~mv~~v~~~l~~ 219 (235)
T cd06193 191 ----ALAPPAGDGYVWIAGE-AGAVRALRRHLRE 219 (235)
T ss_pred ----cccCCCCCeEEEEEcc-HHHHHHHHHHHHH
Confidence 0111134579999999 8999999988764
|
Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-16 Score=187.36 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=125.9
Q ss_pred CChHHHHHHhcC-CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCcee-eEEEec
Q 005109 476 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p-~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v-~i~v~~ 553 (714)
..+|||+.+..+ ....|+|||+|.|. ..+.++|+|+.+ |..|.+|.++.+|+ .+ .|.+|.
T Consensus 677 ~~PGQFv~L~~~~~ge~rP~SIas~~~-~~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd------~l~~I~GPl 738 (944)
T PRK12779 677 AQAGQFVRVLPWEKGELIPLTLADWDA-EKGTIDLVVQGM-----------GTSSLEINRMAIGD------AFSGIAGPL 738 (944)
T ss_pred CCCCceEEEEeCCCCCEEeEEccCCCC-CCCEEEEEEEee-----------ccHHHHHhcCCCcC------EEeeeecCC
Confidence 457999865432 22359999999875 347899888643 88899999888876 45 377888
Q ss_pred CCcc-CCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHH---HHHHHcCC-Cc
Q 005109 554 SNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL---NNFVQSGA-LS 627 (714)
Q Consensus 554 ~~F~-lp~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL---~~~~~~g~-~~ 627 (714)
|+|. ++. ...++++|||+|+||||+++++++....+ .+++||||+|+++ |++|.+++ ++|++... .+
T Consensus 739 G~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g------~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~~ 811 (944)
T PRK12779 739 GRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG------NHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQL 811 (944)
T ss_pred CCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC------CCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCCe
Confidence 8764 443 23468999999999999999999876543 5799999999986 88887664 55655433 33
Q ss_pred EEEEEEecCCC--CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 628 QLIVAFSREGP--TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 628 ~l~~a~Sr~~~--~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++++ +.++. .+++|++.+.+........- .+...||+||| ++|++.|.+.|.+.
T Consensus 812 ~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~ 869 (944)
T PRK12779 812 DVIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPY 869 (944)
T ss_pred EEEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 44443 44432 46788776543211100000 01357999999 99999999988654
|
|
| >TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=140.10 Aligned_cols=92 Identities=23% Similarity=0.366 Sum_probs=72.2
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHh
Q 005109 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (714)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~ 188 (714)
|+|+|+|||||+|++++. ..+..+.+++.+. ..+ +++.+++ ++|||+|+.|+.+.+|++.+.
T Consensus 1 IvY~S~TGNte~fv~~lg---------~~~~~i~~~~~d~------~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~- 62 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKLG---------FQHIRIPVDETDD------IHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKH- 62 (125)
T ss_pred CEEEcccccHHHHHHHcC---------CCcEEeecCCcch------hhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhh-
Confidence 689999999999955442 1223345544332 224 5666655 999999999999999999985
Q ss_pred ccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHH
Q 005109 189 KEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILAN 226 (714)
Q Consensus 189 ~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~ 226 (714)
. +.+||||.||++| ++||.+++++.+++..
T Consensus 63 ---n-----~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 63 ---N-----LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred ---h-----cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 2 8899999999999 9999999999999865
|
Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised. |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-15 Score=182.28 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=122.1
Q ss_pred CChHHHHHHhcC-CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhh-cccCCCCCCCCCcee-eEEEe
Q 005109 476 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWM-KNSLPMEKSNDCSWA-PIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p-~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L-~~~~~g~~~~~~~~v-~i~v~ 552 (714)
.-+|||+.+.++ ...+|+|||++.+. ..+.|+|.++.+ |..|.|| .++.+|+ .+ .+.+|
T Consensus 28 ~~PGQFV~l~~~~~~errplSIa~~~~-~~g~i~l~vk~v-----------G~~T~~L~~~lk~Gd------~l~~v~GP 89 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAERIPLTVADFDR-KKGTITMVVQAL-----------GKTTREMMTKFKAGD------TFEDFVGP 89 (1006)
T ss_pred CCCCeeEEEEeCCCCeeEEEEecCcCC-CCCEEEEEEEec-----------CcHHHHHHhcCCCCC------EEeeeecC
Confidence 357999865433 23469999999775 346788777542 8899998 5777766 34 56777
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|..... .+++||||+|+||||+++++++....+ .+++++||+|+.+ +++|.+||+++.. +++++
T Consensus 90 lG~~~~~~~-~~~vllVaGGiGIAPl~s~~r~l~~~g------~~v~li~g~R~~~-~l~~~del~~~~~-----~~~v~ 156 (1006)
T PRK12775 90 LGLPQHIDK-AGHVVLVGGGLGVAPVYPQLRAFKEAG------ARTTGIIGFRNKD-LVFWEDKFGKYCD-----DLIVC 156 (1006)
T ss_pred CCCCCCCCC-CCeEEEEEEhHHHHHHHHHHHHHHhCC------CcEEEEEeCCChH-HcccHHHHHhhcC-----cEEEE
Confidence 776654322 468999999999999999999876543 4689999999997 9999999987753 22332
Q ss_pred EecCCC--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 633 FSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 633 ~Sr~~~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
+.+++ .+++|++.+.+.. .. .....||+||| ++|++.|.+.+.+
T Consensus 157 -tddgs~G~~G~vt~~l~~~l----~~-~~~d~vy~CGP-~~Mm~av~~~~~~ 202 (1006)
T PRK12775 157 -TDDGSYGKPGFVTAALKEVC----EK-DKPDLVVAIGP-LPMMNACVETTRP 202 (1006)
T ss_pred -ECCCCCCCCCChHHHHHHHh----cc-CCCCEEEEECC-HHHHHHHHHHHHH
Confidence 33432 4678877665421 10 12347999999 9999999998764
|
|
| >PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-15 Score=162.74 Aligned_cols=145 Identities=16% Similarity=0.141 Sum_probs=114.2
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
..+++|+|+|+|+|||||++|+.|++.+.+......++++++.+.+.++ +..++.+++.+||++|||+.|.+| .+..
T Consensus 245 ~~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~--i~~~~~~~d~ii~GspT~~~~~~~-~~~~ 321 (394)
T PRK11921 245 YQENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKND--IITEVFKSKAILVGSSTINRGILS-STAA 321 (394)
T ss_pred CCcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHH--HHHHHHhCCEEEEECCCcCccccH-HHHH
Confidence 3568899999999999999999999999732122568889998876543 345567899999999999888885 5999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWP 257 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~ 257 (714)
|++++. ...++++++++|| +|.|+|.+.+.+.++|+++|++.+.|.....-.. ...+.+.+|.++|..
T Consensus 322 ~l~~l~----~~~~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~ 391 (394)
T PRK11921 322 ILEEIK----GLGFKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAE 391 (394)
T ss_pred HHHHhh----ccCcCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 999987 4568999999999 5999999999999999999999987654433322 223445677766643
|
|
| >PRK02551 flavoprotein NrdI; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=138.61 Aligned_cols=138 Identities=20% Similarity=0.300 Sum_probs=92.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCC-CCCCCCchHHH-
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY-GDGEPTDNAAR- 181 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTy-G~G~~pdna~~- 181 (714)
|+++.|+|.|+||||++|+++|...+.+......+..+++.++..++. +.+.....+|+++||| |.|.+|+++.+
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~~~~p~vli~pTY~~gG~~~~~~~~~ 77 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETT---DFFPETEPFVAFLPTYLEGGNGIDNGDVE 77 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccc---cccccCCCEEEEEeeecCCCCCcccCccc
Confidence 467999999999999999999987765421012233466655543211 1245667899999999 88877765543
Q ss_pred -----HHHHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHH
Q 005109 182 -----FYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 255 (714)
Q Consensus 182 -----F~~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l 255 (714)
..++|. .....++.+||||+||++| +.||.+|+++++.+ +...++.. +-.++.+|++.-++.|
T Consensus 78 ~vp~~v~dFL~----~~~N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~---~vP~L~~f----El~GT~~Dv~~v~~~~ 146 (154)
T PRK02551 78 ILTTPLGDFIA----YHDNAKRCLGIIGSGNRNFNNQYCLTAKQYAKRF---GFPMLADF----ELRGTPSDIERIAAII 146 (154)
T ss_pred cchHHHHHHHc----chhhhhheEEEEeecccHHHHHHHHHHHHHHHHc---CCCEEEEe----eccCCHHHHHHHHHHH
Confidence 222332 1223678999999999999 89999999999875 55544432 2335666665554443
|
|
| >PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=162.28 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=114.8
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
.+++|+|+|+|+|||||++|+.|++.+++.+....++++++++.+.++ +..++.+++.+||++|||++|.+| .+..|
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~--i~~~~~~ad~vilGspT~~~~~~p-~~~~f 326 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNE--ILTNVFRSKGVLVGSSTMNNVMMP-KIAGL 326 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHH--HHhHHhhCCEEEEECCccCCcchH-HHHHH
Confidence 467899999999999999999999999877534567889998877643 334556789999999999877777 79999
Q ss_pred HHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHHH
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELD 260 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L~ 260 (714)
++.+. ...++++++++|| +|.|+|.+++.+.++|+++|++.+ +........ ...+...++-+.|...+.
T Consensus 327 l~~l~----~~~l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 327 LEEIT----GLRFRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred HHHhh----ccCcCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 99986 4568999999999 789999999999999999999975 323322222 233445666667665554
|
|
| >PRK05569 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=131.56 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=94.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCC-chHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p-dna~~F 182 (714)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..+++.++.+.+. .++.+++.++|++|||+.|.+| +.+..|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsPty~~~~~~~~~~~~~ 72 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAG--AEVTIKHVADAKV------EDVLEADAVAFGSPSMDNNNIEQEEMAPF 72 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCC--CeEEEEECCcCCH------HHHhhCCEEEEECCCcCCCcCChHHHHHH
Confidence 468999999999999999999999998765 4578888887764 3578999999999999888764 799999
Q ss_pred HHHHHhccCCCccCCceEEEEeccCCchhHH-HHHHHHHHHHHHHcCCccccc
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGLGNRQYEHF-NKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~~~~ 234 (714)
++.|. ...++++++++||. |.|. +.+.+.+.+.|.+.|++.+.+
T Consensus 73 ~~~l~----~~~~~~K~v~~f~t----~g~~~~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 73 LDQFK----LTPNENKKCILFGS----YGWDNGEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred HHHhh----ccCcCCCEEEEEeC----CCCCCCcHHHHHHHHHHHCCCeEeee
Confidence 99986 33478999999995 4443 567788899999999987654
|
|
| >PRK05568 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=130.84 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=94.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCC-chHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p-dna~~F 182 (714)
|++++|+|+|+||||+++|+.|++.+.+.+ ..++++++.+.+. .++.+++.+||++|||+.|.+| +.+..|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsp~y~~~~~~~~~~~~f 72 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENG--AEVKLLNVSEASV------DDVKGADVVALGSPAMGDEVLEEGEMEPF 72 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEECCCCCH------HHHHhCCEEEEECCccCcccccchhHHHH
Confidence 468999999999999999999999998765 5678888887764 3578899999999999888864 789999
Q ss_pred HHHHHhccCCCccCCceEEEEeccCCchhHH-HHHHHHHHHHHHHcCCccccc
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGLGNRQYEHF-NKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~~~~ 234 (714)
++.+. ..++++++++||. |.|- ..+.+.+.+.|+++|++.+.+
T Consensus 73 ~~~~~-----~~~~~k~~~~f~t----~G~~~~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 73 VESIS-----SLVKGKKLVLFGS----YGWGDGEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred HHHhh-----hhhCCCEEEEEEc----cCCCCChHHHHHHHHHHHCCCEEeCC
Confidence 99885 2368999999996 3332 346788899999999987765
|
|
| >PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=127.16 Aligned_cols=121 Identities=22% Similarity=0.366 Sum_probs=87.6
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCC----CCCCchHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGD----GEPTDNAAR 181 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~----G~~pdna~~ 181 (714)
.+.|+|.|.||||+.||++|.... ..+++++.+ .+..+..+++++||||+ |+.|+.+.+
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl~~~~---------~~i~i~~~~--------~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~ 64 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKLGLPA---------TRIPINERE--------RLEVDEPYILITPTYGGGGTAGAVPKQVIR 64 (134)
T ss_pred cEEEEEECCChhHHHHHHHhCCcc---------eEEecCCCc--------cccCCCCEEEEEeccCCCCcCCcccHHHHH
Confidence 578999999999999998885431 234554321 24456789999999999 699999999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCc---hhhHHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCI---EDDFSAWRELVWP 257 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~---e~~f~~W~~~l~~ 257 (714)
|++... .....++|||.||++| ++||.+++.+.+.+. +|+..-=+..+. .+.+..|.+++|.
T Consensus 65 Fl~~~~-------n~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~-------vp~l~k~El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 65 FLNDEH-------NRKLLRGVIASGNRNFGDAFALAGDVISAKCQ-------VPLLYRFELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred HHhccc-------cCCcEEEEEEecCchHHHHHHHHHHHHHHHhC-------CCeEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 987753 1246899999999999 899999999999874 232221122232 3445777777764
|
|
| >PLN02292 ferric-chelate reductase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=152.45 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=115.1
Q ss_pred ChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEec
Q 005109 477 PLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 477 p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~ 553 (714)
.+||++-..+|. .+.|+|||+|+|..++++++++|+. .|..|++|.+....++....-.+.+.+|.
T Consensus 353 ~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd~i~~~~V~VeGPY 421 (702)
T PLN02292 353 SPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSDQIDRLAVSVEGPY 421 (702)
T ss_pred CCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCCccccceEEEECCc
Confidence 356655433454 4689999999986456788887753 37788888876433321111245567778
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHH-------HHHcCC
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNN-------FVQSGA 625 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~-------~~~~g~ 625 (714)
|.+..+.....+++|||||+||||+++++++..+..... ....++.|+|++|+.+ |.++.+++.. +++. .
T Consensus 422 G~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~-~ 499 (702)
T PLN02292 422 GPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSF-I 499 (702)
T ss_pred cCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhc-C
Confidence 877644334578999999999999999999987653211 1225899999999997 9988776543 2233 3
Q ss_pred CcEEEEEEecCCCCc-ccccchhhhchHHHHhcc-----cCCcEEEEecCc
Q 005109 626 LSQLIVAFSREGPTK-EYVQHKMMEKSSDIWNML-----SEGAYLYVCGDA 670 (714)
Q Consensus 626 ~~~l~~a~Sr~~~~k-~yVq~~l~e~~~~l~~~i-----~~~~~iyvCGpa 670 (714)
..++.+.++|+.+.+ .|-++ +.+.+.+.+ .+...+.+|||.
T Consensus 500 ~~~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~ 546 (702)
T PLN02292 500 DIQIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPN 546 (702)
T ss_pred CceEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCC
Confidence 447778888876432 22222 222222221 256789999993
|
|
| >PLN02844 oxidoreductase/ferric-chelate reductase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=153.16 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=118.5
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCC----CC-CCCCCce
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP----ME-KSNDCSW 546 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~----g~-~~~~~~~ 546 (714)
+..+|||+..-+|. .+.|+|||+|+|..+++.++++|+.. |-.|+.|.+... .+ ....+..
T Consensus 338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~ 406 (722)
T PLN02844 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIP 406 (722)
T ss_pred CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceE
Confidence 44568887654454 36799999998865567788877532 444555544321 11 1111125
Q ss_pred eeEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHH-----H
Q 005109 547 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNN-----F 620 (714)
Q Consensus 547 v~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~-----~ 620 (714)
+.|.+|.|.|..+....++++|||+|||||||++++++........ ....++.|+|++|+.+ |..|.+|+.. +
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~~ 485 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQS 485 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHhH
Confidence 6667788888665444578999999999999999999998643211 1225799999999998 9999999863 2
Q ss_pred HHcCCCcEEEEEEecCCCCcccccchhhhc--hHHHHhcccCCcEEEEecCc
Q 005109 621 VQSGALSQLIVAFSREGPTKEYVQHKMMEK--SSDIWNMLSEGAYLYVCGDA 670 (714)
Q Consensus 621 ~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~--~~~l~~~i~~~~~iyvCGpa 670 (714)
.+. ...++++..+|+......+++.+... ...++ +-.+...+.+||+.
T Consensus 486 ~~~-~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~ 535 (722)
T PLN02844 486 SNQ-LNLKLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLE 535 (722)
T ss_pred HHh-cCceEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCC
Confidence 222 24477888899865544555544331 11222 22455789999994
|
|
| >PLN02631 ferric-chelate reductase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=152.03 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=107.5
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCC-CCCCCCCceeeEE
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP-MEKSNDCSWAPIF 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~-g~~~~~~~~v~i~ 550 (714)
+.-+||++-..+|. .+.|+|||+|+|..+++.++++|+. .|..|++|.+... +++ ...+.+.
T Consensus 334 ~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~---~i~V~Ve 399 (699)
T PLN02631 334 HYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSID---SLEVSTE 399 (699)
T ss_pred cCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCC---eeEEEEE
Confidence 44567876554554 4679999999986556788888752 4888999977442 221 1245566
Q ss_pred EecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHHH------HHc
Q 005109 551 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF------VQS 623 (714)
Q Consensus 551 v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~------~~~ 623 (714)
+|.|.|..+.....++||||||+||||++|++++...+...+ .+.+++.|+||+|+.+ |.+|.|||..+ .+
T Consensus 400 GPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~- 477 (699)
T PLN02631 400 GPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDIS- 477 (699)
T ss_pred CCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhh-
Confidence 778877665445578999999999999999999998654221 1235899999999997 99999999863 22
Q ss_pred CCCcEEEEEEecCCC
Q 005109 624 GALSQLIVAFSREGP 638 (714)
Q Consensus 624 g~~~~l~~a~Sr~~~ 638 (714)
....++...+||++.
T Consensus 478 ~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 478 RLNLRIEAYITREDK 492 (699)
T ss_pred cCceEEEEEEcCCCC
Confidence 235578888999754
|
|
| >PRK06242 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=116.38 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=86.1
Q ss_pred ceEEEEEeCC-CchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 105 QKVTIFFGTQ-TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 105 ~~v~I~YgSq-tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|+++|+|.|+ ||||+.+|+.|++.+. ++++++.+... .++.+++.+||++||| .|.+|+.+..|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-------~~~~~i~~~~~------~~~~~~d~ii~g~pvy-~~~~~~~~~~fl 66 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-------AEVIDPGDVNP------EDLSEYDLIGFGSGIY-FGKFHKSLLKLI 66 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-------cEEecHHHCCc------ccHhHCCEEEEeCchh-cCCcCHHHHHHH
Confidence 5689999999 7999999999999883 35666665442 3477899999999999 788999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
+.+. .++++++++||.+...... ..+.+.+.|..+|++.+..
T Consensus 67 ~~~~------~~~~k~~~~f~t~g~~~~~---~~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 67 EKLP------PVSGKKAFIFSTSGLPFLK---YHKALKKKLKEKGFEIVGE 108 (150)
T ss_pred Hhhh------hhcCCeEEEEECCCCCcch---HHHHHHHHHHHCCCEEEEE
Confidence 8874 2578999999976554432 2789999999999997755
|
|
| >PRK03767 NAD(P)H:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.3e-10 Score=112.17 Aligned_cols=126 Identities=18% Similarity=0.119 Sum_probs=93.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCCeeEEecCccccccchH--------------HHHhhcCCCeEEEEEe
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDE--------------YEEKLKKENIVFFFLA 168 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~--------------~~~~l~~~~~vif~~s 168 (714)
|++|+|+|+|++|||+++|+.+++.+.+ .+ ..++++++.+..+++.. -.+++..++.+||++|
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G--~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAG--AEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCC--cEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEec
Confidence 4689999999999999999999999986 55 56788888543221110 0467888999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
|| .|.+|..++.|++++........+.++.+++|+.+.....---...+.+...|..+|+..+
T Consensus 79 ty-~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv 141 (200)
T PRK03767 79 TR-FGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIV 141 (200)
T ss_pred cc-CCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEe
Confidence 99 9999999999999986211123588999999996544332233344556666678888754
|
|
| >TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.7e-10 Score=111.21 Aligned_cols=124 Identities=19% Similarity=0.104 Sum_probs=93.0
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhh-cCCCeeEEecCccccccchH------------H--HHhhcCCCeEEEEEeCC
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARAR-YDKAIFKVVDIDDYADEEDE------------Y--EEKLKKENIVFFFLATY 170 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~-~~~~~v~v~dl~~~~~~~~~------------~--~~~l~~~~~vif~~sTy 170 (714)
+|+|+|+|+||+|+++|+.+++.+++. + ..++++++.+...++.. + ..++.+++.+||++|||
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g--~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty 79 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDG--AEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR 79 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCC--CEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc
Confidence 699999999999999999999999765 4 56788887654321100 0 14577899999999999
Q ss_pred CCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 171 GDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
.|.++..++.|++++........+.++..++|+.+.....-...+...+...|..+|+..+
T Consensus 80 -~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv 140 (197)
T TIGR01755 80 -FGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIV 140 (197)
T ss_pred -ccCccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEe
Confidence 8999999999999986211123588999999996654444455555667777788888754
|
This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected. |
| >PRK11104 hemG protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-10 Score=111.45 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=74.4
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
|+++|+|+|.||||+++|+.|++.+.. + ..++++++++... .++.+++.+||++||| .|.+++.+..|++
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g--~~v~~~~~~~~~~------~~l~~yD~vIlGspi~-~G~~~~~~~~fl~ 70 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-G--IQCDVVNLHRIEE------PDLSDYDRVVIGASIR-YGHFHSALYKFVK 70 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-C--CeEEEEEhhhcCc------cCHHHCCEEEEECccc-cCCcCHHHHHHHH
Confidence 478999999999999999999999976 5 4577888877553 2477899999999999 9999999999987
Q ss_pred HHHhccCCCccCCceEEEEecc
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLG 206 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlG 206 (714)
... ..|+++++++|++|
T Consensus 71 ~~~-----~~l~~K~v~~F~v~ 87 (177)
T PRK11104 71 KHA-----TQLNQMPSAFFSVN 87 (177)
T ss_pred HHH-----HHhCCCeEEEEEec
Confidence 753 35899999999988
|
|
| >PRK07116 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=106.50 Aligned_cols=133 Identities=14% Similarity=0.189 Sum_probs=87.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccc--------------------h---HHHHhhcCC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE--------------------D---EYEEKLKKE 160 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~--------------------~---~~~~~l~~~ 160 (714)
|++++|+|.|.||||+.+|+.|++.+.... +.+.+...|...+ . ....++..+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~----~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGADL----FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCCe----EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 678999999999999999999999985421 2333333222100 0 012356789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCcccccccccc
Q 005109 161 NIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 239 (714)
Q Consensus 161 ~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD 239 (714)
+.++|++|+| .|.+|..+..|++.+ .++++++++|+. |.+.+ +.+...+.+.+. ...+.+.-..+
T Consensus 78 D~Iiig~Pv~-~~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~---~~~~~~~~~~~ 143 (160)
T PRK07116 78 DVIFLGFPIW-WYVAPRIINTFLESY-------DFSGKTVIPFATSGGSGI---GNAEKELKKSYP---DANWKEGRLLN 143 (160)
T ss_pred CEEEEECChh-ccccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCCc---CcHHHHHHHHCC---cCccccCeeec
Confidence 9999999999 688898888887654 377899999997 65554 444555555542 22222211111
Q ss_pred CCCCchhhHHHHHHHH
Q 005109 240 DDQCIEDDFSAWRELV 255 (714)
Q Consensus 240 ~~~~~e~~f~~W~~~l 255 (714)
....++++++|.+++
T Consensus 144 -~~~~~~~i~~wl~~~ 158 (160)
T PRK07116 144 -GGASKEEIKEWINKL 158 (160)
T ss_pred -CCCcHHHHHHHHHHc
Confidence 112366799998764
|
|
| >COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=117.72 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=102.2
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
++|.|+|.|++|+|+.+|++|++.+.+.| +.|.++++.+-+. .++.+.+.+.+.+++++||+ ++++++.+..++.
T Consensus 247 ~~V~l~Y~smyg~T~~ma~aiaegl~~~g--v~v~~~~~~~~~~--~eI~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l~ 321 (388)
T COG0426 247 GKVDLIYDSMYGNTEKMAQAIAEGLMKEG--VDVEVINLEDADP--SEIVEEILDAKGLVVGSPTI-NGGAHPPIQTALG 321 (388)
T ss_pred ceEEEEEecccCCHHHHHHHHHHHhhhcC--CceEEEEcccCCH--HHHHHHHhhcceEEEecCcc-cCCCCchHHHHHH
Confidence 38999999999999999999999999987 5678888877654 55778889999999999999 6666668999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
.+. ....+++..+||| +|.|-..+.+.+.+.|+++|-+...+
T Consensus 322 ~v~----~~~~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 322 YVL----ALAPKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred HHH----hccCcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEecc
Confidence 887 4557788899999 89999999999999999999987665
|
|
| >PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=100.24 Aligned_cols=115 Identities=26% Similarity=0.388 Sum_probs=70.4
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCC----CCchHHHHHH
Q 005109 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGE----PTDNAARFYK 184 (714)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~----~pdna~~F~~ 184 (714)
|+|.|.||||++|+++|...+... . +.+.+.+ +.+.-...+|+++||||.|+ .|+...+|++
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~~------~-i~~~~~~-------~~~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~ 66 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPAI------R-IPIREIS-------PDLEVDEPFVLITPTYGFGENDGGVPKQVIRFLE 66 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SEE------E-E-SSCTT-------STS--SS-EEEEEE-BTTTBSSTSS-HHHHHHHH
T ss_pred CEEECCCcCHHHHHHHHcccchhc------c-ccccccc-------ccccCCCCEEEEecccCCCCCCCCCCHHHHHHHH
Confidence 799999999999999887644321 1 1222111 12334566899999999999 9999999888
Q ss_pred HHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHH
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 251 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W 251 (714)
+-. -...-.+|+|.||++| +.||.+|+++.+.+ +...++.. +-.+.++|.+.-
T Consensus 67 ~~~-------N~~~l~GVigSGNrNfg~~f~~aa~~ia~ky---~VPll~kf----El~Gt~~Dv~~v 120 (122)
T PF07972_consen 67 NPD-------NRKLLRGVIGSGNRNFGDNFCLAADKIAEKY---GVPLLYKF----ELSGTPEDVERV 120 (122)
T ss_dssp SHH-------HGGGEEEEEEEE-GGGGGGTTHHHHHHHHHH---T--EEEEE----ETT--HHHHHHH
T ss_pred HHH-------HHhhheeEEecCCcHHHHHHHHHHHHHHHHc---CCCEEEEE----ecCCCHHHHHHH
Confidence 543 2345678999999999 89999999999876 44444322 233556666543
|
The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A. |
| >KOG3378 consensus Globins and related hemoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-10 Score=112.16 Aligned_cols=180 Identities=18% Similarity=0.320 Sum_probs=104.7
Q ss_pred CCChHHHHHHh--cCCCc---ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeE
Q 005109 475 KPPLGVFFAAI--VPRLQ---PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 549 (714)
Q Consensus 475 ~~p~~~~l~~i--~p~l~---pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i 549 (714)
...+|||+... .|++. -|-||.|+......+.+.|.|+. ...|+.|+|++.-...|+ .+.+
T Consensus 180 ~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~---------~A~G~VS~~~H~~~KVGD-----~v~~ 245 (385)
T KOG3378|consen 180 HAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRR---------VAGGVVSNFVHDNLKVGD-----IVGV 245 (385)
T ss_pred cCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEee---------hhchhhHHHhhccccccc-----eeec
Confidence 34578887532 13321 35566665554456778877764 355999999987555544 4667
Q ss_pred EEecCCccCCC---CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCC
Q 005109 550 FVRQSNFKLPA---DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 626 (714)
Q Consensus 550 ~v~~~~F~lp~---~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~ 626 (714)
..|.|+|.... +..+|+++.++|+||+|+++++++.+.-..+ +|+. --...- |.-|++-++
T Consensus 246 S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~~~----RP~~---~~~~~~-~~K~k~~~K-------- 309 (385)
T KOG3378|consen 246 SPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCYSS----RPFK---QWLEQL-KLKYKENLK-------- 309 (385)
T ss_pred cCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhcCCC----CcHH---HHHHHH-HHHHHHHHH--------
Confidence 77889997753 4579999999999999999999987641100 1110 000000 111111111
Q ss_pred cEEEEEEecCCC--Ccccccchhhh--chHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHH
Q 005109 627 SQLIVAFSREGP--TKEYVQHKMME--KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQE 687 (714)
Q Consensus 627 ~~l~~a~Sr~~~--~k~yVq~~l~e--~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~ 687 (714)
+.--||.+.+ .+.-|...+.. +.+.+-++-...++||.||| ..+|+.|..-|.++..+
T Consensus 310 --~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~ 371 (385)
T KOG3378|consen 310 --LKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVE 371 (385)
T ss_pred --HHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCC
Confidence 0001122211 12222222211 22333333345789999999 89999999999887544
|
|
| >PF12724 Flavodoxin_5: Flavodoxin domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=95.86 Aligned_cols=86 Identities=22% Similarity=0.355 Sum_probs=69.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHH
Q 005109 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (714)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~ 187 (714)
+|+|.|.||||+++|+.|++.|.+.+ ..+|+.+...+ ..++.+++.+||++|+| .|.++..+.+|++.+.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~-----~~v~~~~~~~~----~~~~~~yD~vi~gspiy-~g~~~~~~~~fi~~~~ 70 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEG-----ELVDLEKVEED----EPDLSDYDAVIFGSPIY-AGRIPGEMREFIKKNK 70 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhc-----cEEEHHhhhhc----ccccccCCEEEEEEEEE-CCcCCHHHHHHHHHHH
Confidence 58999999999999999999998653 45566554211 24678999999999999 7999999999999874
Q ss_pred hccCCCccCCceEEEEeccCC
Q 005109 188 EKEGGEWLQKLKYGVFGLGNR 208 (714)
Q Consensus 188 ~~~~~~~l~~~~~aVFGlGds 208 (714)
..|+++++++|..|-.
T Consensus 71 -----~~l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 71 -----DNLKNKKVALFSVGGS 86 (143)
T ss_pred -----HHHcCCcEEEEEEeCC
Confidence 3578899999987644
|
|
| >COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.7e-08 Score=90.41 Aligned_cols=124 Identities=19% Similarity=0.315 Sum_probs=85.3
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCC----CCCchHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDG----EPTDNAAR 181 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G----~~pdna~~ 181 (714)
.+.|+|-|.||||..|+++|. +. ...+.+...++ .+.-...+|+++||||.| +.|....+
T Consensus 2 ~~~v~f~S~SgNt~RFv~kL~--~~----~~~I~~~~~~~----------~~~v~epyvlitpTyg~G~~~~~Vp~~vi~ 65 (141)
T COG1780 2 MLLVYFSSLSGNTHRFVEKLG--LP----AVRIPLNREED----------PIEVDEPYVLITPTYGGGGTVGAVPKQVIR 65 (141)
T ss_pred ceEEEEEecCccHHHHHHHhC--CC----ceecccccccC----------CccCCCCeEEEeccccCCCccCccCHHHHH
Confidence 467999999999999999887 11 11222221111 133345689999999999 89988777
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhh---HHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD---FSAWRELVWP 257 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~---f~~W~~~l~~ 257 (714)
|+..= .-..+.-+|.|.||++| ..||.+|+.+.+.+ |..-++.. +-.++++| +.+|..++|+
T Consensus 66 FLn~~-------~Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~F----EL~GT~~Dv~~v~~~v~~~~~ 131 (141)
T COG1780 66 FLNNE-------HNRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRF----ELLGTAEDVAAVRKGVTEFWK 131 (141)
T ss_pred Hhccc-------cchhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEE----eccCCHHHHHHHHHHHHHHHH
Confidence 75432 23467789999999999 89999999998775 54444332 22244444 6678777776
Q ss_pred HH
Q 005109 258 EL 259 (714)
Q Consensus 258 ~L 259 (714)
..
T Consensus 132 ~~ 133 (141)
T COG1780 132 RA 133 (141)
T ss_pred hC
Confidence 43
|
|
| >PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-08 Score=95.29 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=49.4
Q ss_pred CeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEeeecCCcccchHHHHHHHHHcC--CCcEEEEEEecCC
Q 005109 565 PIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG--ALSQLIVAFSREG 637 (714)
Q Consensus 565 piImIa~GTGIAPfrs~lq~~~~~~~-~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g--~~~~l~~a~Sr~~ 637 (714)
.++|||||+||+|+.++++++..... ......++.|+|.+|+.+.=..|.++|+++.... ...++.+.++++.
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~ 78 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRES 78 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT--
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCc
Confidence 38999999999999999999987664 2234578999999999983347886666554321 2456777776653
|
; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A. |
| >PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=88.42 Aligned_cols=124 Identities=20% Similarity=0.287 Sum_probs=96.8
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCcccc---------------ccchHHHHhhcCCCeEEEEE
Q 005109 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYA---------------DEEDEYEEKLKKENIVFFFL 167 (714)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~---------------~~~~~~~~~l~~~~~vif~~ 167 (714)
|||+|++||.. |+|+.+|+.+++.+.+.+ ..++++|+.++. .+-.++.+++.+.+.+||++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 68999999986 999999999999998874 678899998861 11223456788999999999
Q ss_pred eCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 168 ATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
|+| .|.+|.-++.|++|+.. .....+.++.+++++.|.+.... ..+...+...|..+|+.-+-
T Consensus 79 P~y-~~~~s~~lK~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~ 141 (152)
T PF03358_consen 79 PVY-NGSVSGQLKNFLDRLSC-WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVP 141 (152)
T ss_dssp EEB-TTBE-HHHHHHHHTHHH-THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEEC
T ss_pred cEE-cCcCChhhhHHHHHhcc-ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcC
Confidence 999 99999999999999952 11346899999999888665433 33567788888888987553
|
5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction |
| >PF12641 Flavodoxin_3: Flavodoxin domain | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-07 Score=89.05 Aligned_cols=96 Identities=24% Similarity=0.409 Sum_probs=73.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHH
Q 005109 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (714)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~ 187 (714)
+|+|.|.||||+++|+.|++.|.. ..++++++... .+.++++++++..+| -|.+++.+++|++.|
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~------~~~~~~~~~~~-------~~~~yD~i~lG~w~d-~G~~d~~~~~fl~~l- 65 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA------KDIVSVEEPPE-------DLEDYDLIFLGFWID-KGTPDKDMKEFLKKL- 65 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC------ceeEecccccc-------CCCCCCEEEEEcCcc-CCCCCHHHHHHHHHc-
Confidence 489999999999999999998864 25666766542 267899999999999 799999999987775
Q ss_pred hccCCCccCCceEEEEeccCCc--hhHHHHHHHHHHHHHHH
Q 005109 188 EKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILAN 226 (714)
Q Consensus 188 ~~~~~~~l~~~~~aVFGlGds~--Y~~f~~~~k~ld~~L~~ 226 (714)
+++++++||.--.. =+|+..+.+++.+.+.+
T Consensus 66 --------~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 66 --------KGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred --------cCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 46889999753111 14667777666666644
|
|
| >COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.4e-07 Score=85.49 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=74.4
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
++++|+|+|++|+|.++|+.|+..|++.| ..|++.|+..... .++.+++.+|+++|-| .|........|++
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g--~qvdi~dl~~~~~------~~l~~ydavVIgAsI~-~~h~~~~~~~Fv~ 71 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESG--IQVDIQDLHAVEE------PALEDYDAVVIGASIR-YGHFHEAVQSFVK 71 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcC--Ceeeeeehhhhhc------cChhhCceEEEecchh-hhhhHHHHHHHHH
Confidence 57999999999999999999999999887 5577777765431 3678999999999999 9999999888888
Q ss_pred HHHhccCCCccCCceEEEEecc
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLG 206 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlG 206 (714)
.-. ..|++++.|+|.++
T Consensus 72 k~~-----e~L~~kP~A~f~vn 88 (175)
T COG4635 72 KHA-----EALSTKPSAFFSVN 88 (175)
T ss_pred HHH-----HHHhcCCceEEEee
Confidence 764 45888999999875
|
|
| >PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-06 Score=83.65 Aligned_cols=132 Identities=17% Similarity=0.337 Sum_probs=75.5
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccc---c------c-----------hHH---HHhhcCCCe
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---E------E-----------DEY---EEKLKKENI 162 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~------~-----------~~~---~~~l~~~~~ 162 (714)
|++|+|-|+||||+.+|+.|++.+..- -+++...+.|.. + . .++ ..++.+|+.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~gad----i~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGAD----IFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-E----EEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCCC----EEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 579999999999999999999876432 134444444433 0 0 000 125688999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCccccccccccCC
Q 005109 163 VFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD 241 (714)
Q Consensus 163 vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~ 241 (714)
++++.|+| -|.+|..+..|++.. .++|++++.|-. |.+. +..+.+.+.+.+. +|+..-.+.. ..+
T Consensus 77 I~lG~PvW-~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs~---~~~~~~~l~~~~~--~a~i~~g~~~-~~~ 142 (156)
T PF12682_consen 77 IFLGTPVW-WGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGSG---FGNSLEDLKKLCP--GATILEGLAI-NRG 142 (156)
T ss_dssp EEEEEEEE-TTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS-----CHHHHHHHHHH-T--TSEE---EE----S
T ss_pred EEEechHH-cCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCCC---hhHHHHHHHHHCC--CCEeecCeEE-eCC
Confidence 99999999 999999988887643 488999999953 3322 3344455554432 3443222222 111
Q ss_pred CCchhhHHHHHHHH
Q 005109 242 QCIEDDFSAWRELV 255 (714)
Q Consensus 242 ~~~e~~f~~W~~~l 255 (714)
.-.++++.+|.++|
T Consensus 143 ~~~~~~i~~Wl~~i 156 (156)
T PF12682_consen 143 SVSEEEIKEWLKKI 156 (156)
T ss_dssp ---HHHHHHHHHHT
T ss_pred CcCHHHHHHHHHhC
Confidence 11578999998764
|
|
| >KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.6e-06 Score=98.90 Aligned_cols=131 Identities=16% Similarity=0.275 Sum_probs=83.7
Q ss_pred ChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCC--CC--CC---CCce
Q 005109 477 PLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM--EK--SN---DCSW 546 (714)
Q Consensus 477 p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g--~~--~~---~~~~ 546 (714)
-+||++-+-+| .++-+||||+|+| +++.+.+.|+.+ |..|+-|.+.... .+ .. ...+
T Consensus 383 ~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~ 449 (646)
T KOG0039|consen 383 KPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPK 449 (646)
T ss_pred CCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCce
Confidence 46777644345 4578999999999 468899888754 6666666544321 00 00 0124
Q ss_pred eeEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCC------------CCCcEEEEEeeecCCccc-ch
Q 005109 547 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA------------ELGPSLLFFGCRNRKMDY-IY 613 (714)
Q Consensus 547 v~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~------------~~~~~~Lf~G~R~~~~D~-ly 613 (714)
+.|.+|.|.=.-+-..-.-++|||+|.|++||.|++++.......+. ..+++..+|-||... ++ .+
T Consensus 450 i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~-sf~wf 528 (646)
T KOG0039|consen 450 ILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQR-SFEWF 528 (646)
T ss_pred EEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEecccc-chHHH
Confidence 55666654321111122347999999999999999999987654332 346778888898887 55 45
Q ss_pred HHHHHHHH
Q 005109 614 EDELNNFV 621 (714)
Q Consensus 614 ~dEL~~~~ 621 (714)
.+.+.+..
T Consensus 529 ~~~l~~v~ 536 (646)
T KOG0039|consen 529 KGLLTEVE 536 (646)
T ss_pred HHHHHHHH
Confidence 55555544
|
|
| >PRK10569 NAD(P)H-dependent FMN reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.3e-05 Score=75.28 Aligned_cols=120 Identities=10% Similarity=0.149 Sum_probs=94.5
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCccccccc-----------hHHHHhhcCCCeEEEEEeCCC
Q 005109 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------DEYEEKLKKENIVFFFLATYG 171 (714)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-----------~~~~~~l~~~~~vif~~sTyG 171 (714)
++|+++.||-. ++|..+++.+.+.+.+.+ ..++++|+.++..++ ..+.+++...+.+||++|.|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g--~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 77 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLG--VEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY- 77 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCC--CEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-
Confidence 47999999984 889999999999998765 567778877654422 12345678889999999999
Q ss_pred CCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 172 DGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
.|..|.-.+.|++|+. ...+.++.+++++.| ....+.-..--.+...|..+||..+
T Consensus 78 ~~s~pg~LKn~iD~l~----~~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 78 KASFSGALKTLLDLLP----ERALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred CCCCCHHHHHHHHhCC----hhhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 9999999999999995 346899999999998 4455555554567778888999854
|
|
| >PRK06934 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.7e-05 Score=76.86 Aligned_cols=135 Identities=12% Similarity=0.159 Sum_probs=82.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc----------------chH---HHHhhcCCCeEE
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------------EDE---YEEKLKKENIVF 164 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------------~~~---~~~~l~~~~~vi 164 (714)
...++|.=|+.||||+.+|+.|++.+..-- .++...+.|..+ .++ ...++.+++.++
T Consensus 59 ~~s~~~~~~~~~GnTk~vAe~Ia~~~gaDl----~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~ 134 (221)
T PRK06934 59 GASILQKNGEVLGSTQYVAQIIQEETGGDL----FRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIF 134 (221)
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHCCCE----EEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEE
Confidence 344566666677999999999999875421 233333333211 111 135678999999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCcccccccc--ccCC
Q 005109 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGL--GDDD 241 (714)
Q Consensus 165 f~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~--gD~~ 241 (714)
++.|.| -|.+|.-+..|++.. .++|++++.|-. |-+. +....+.+.+.+ -+|+.+.+--. +++-
T Consensus 135 IG~PIW-wg~~P~~V~tFLe~~-------d~~GK~I~pF~T~ggsg---~g~s~~~i~~l~--~~a~~v~~Gl~i~~~~~ 201 (221)
T PRK06934 135 IGYPIW-WYKMPMVMYSFFEQH-------DFSGKTLIPFTTHGGSR---FSDSLREIKRLQ--PNAQLVTQGLAISRNDV 201 (221)
T ss_pred EEcchh-hccccHHHHHHHHhc-------CCCCCEEEEEEecCCCC---ccchHHHHHHHc--CCcceeccceeeecCcc
Confidence 999999 899999988887654 478999999963 2222 233334444332 14422322111 2221
Q ss_pred --CCchhhHHHHHHHH
Q 005109 242 --QCIEDDFSAWRELV 255 (714)
Q Consensus 242 --~~~e~~f~~W~~~l 255 (714)
...++++..|.+++
T Consensus 202 ~~~~~~~~I~~Wl~~l 217 (221)
T PRK06934 202 TDDDTPKEIINWLNTL 217 (221)
T ss_pred cccchHHHHHHHHHHc
Confidence 12478899998764
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.4e-05 Score=96.05 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=63.5
Q ss_pred CChHHHHHHhcC-----CC-cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeE
Q 005109 476 PPLGVFFAAIVP-----RL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 549 (714)
Q Consensus 476 ~p~~~~l~~i~p-----~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i 549 (714)
.-+|||+.+-.+ .+ .||++||++... ..+.|++++++| |..|.+|+++.+|+ .+.+
T Consensus 819 ~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~-e~g~It~i~rvV-----------GkgT~~Ls~l~~Gd------~v~v 880 (1028)
T PRK06567 819 FKFGQFFRLQNYSEDAAKLIEPVALSPIDIDV-EKGLISFIVFEV-----------GKSTSLCKTLSENE------KVVL 880 (1028)
T ss_pred CCCCceEEEEeCCCCCccccCceeEEeeccCC-CCCEEEEEEEEE-----------ChHHHHHhcCCCCC------EEEE
Confidence 447999865432 22 578999999765 357899998876 99999999998876 4667
Q ss_pred EEecC-CccCCCCCCCCeEEEecCCcchhH
Q 005109 550 FVRQS-NFKLPADAKVPIIMIGPGTGLAPF 578 (714)
Q Consensus 550 ~v~~~-~F~lp~~~~~piImIa~GTGIAPf 578 (714)
.+|.| .|.++. ...+++||||+|+||+
T Consensus 881 ~GPLG~pF~i~~--~k~vLLVgGGVGiApL 908 (1028)
T PRK06567 881 MGPTGSPLEIPQ--NKKIVIVDFEVGNIGL 908 (1028)
T ss_pred EcccCCCCCCCC--CCeEEEEEccccHHHH
Confidence 77854 588764 3569999999999983
|
|
| >TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00019 Score=70.47 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=91.2
Q ss_pred eEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc-----------chHHHHhhcCCCeEEEEEeCCCC
Q 005109 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------EDEYEEKLKKENIVFFFLATYGD 172 (714)
Q Consensus 106 ~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------~~~~~~~l~~~~~vif~~sTyG~ 172 (714)
+|+++.||- .|++.++++.+.+.+...+ ..++++|+.++... -..+.+++...+.+||++|.| +
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~--~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~ 77 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQG--VEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-K 77 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCC--CeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-c
Confidence 588999995 6889999999999998765 34667777554321 112345677889999999999 9
Q ss_pred CCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 173 GEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 173 G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
|.+|...+.|++|+. ...+.++.+++++.| ..+.++...-..+...|..+|+..+.+
T Consensus 78 ~sip~~LK~~iD~~~----~~~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~~~ 134 (171)
T TIGR03567 78 ASYSGVLKALLDLLP----QRALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHILP 134 (171)
T ss_pred CCCCHHHHHHHHhCC----hhhhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccccc
Confidence 999999999999984 235889999988887 455665544346788888999965433
|
Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566). |
| >PRK00170 azoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00031 Score=70.56 Aligned_cols=155 Identities=9% Similarity=-0.014 Sum_probs=101.4
Q ss_pred CceEEEEEeCC--C-chHHHHHHHHHHHHHhhcCCCeeEEecCcccccc---------------------------chHH
Q 005109 104 KQKVTIFFGTQ--T-GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (714)
Q Consensus 104 ~~~v~I~YgSq--t-Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~ 153 (714)
|++|+|++||- . |+|..+|+.+.+.+++.++...++++||.+.+.. -.++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 57899999996 3 8899999999999988744466788888654321 1112
Q ss_pred HHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc---------cCCCccCCceEEEEeccCCch--hHHHHHHHHHHH
Q 005109 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK---------EGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDE 222 (714)
Q Consensus 154 ~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~---------~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~ 222 (714)
.+++...+.+||++|.| .+..|.-.+.|++++... .....++++++.++......+ ..+..+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 35678889999999999 999999999999998510 011247889998887532222 112344556667
Q ss_pred HHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHH
Q 005109 223 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 223 ~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 260 (714)
.|.-+|.+.+-.+.....+. ..+.-++|.++....+.
T Consensus 160 ~~~~~G~~~~~~~~~~g~~~-~~~~~~~~~~~a~~~~~ 196 (201)
T PRK00170 160 FLGFIGITDVEFVFAEGHNY-GPEKAAKIISAAKAAAD 196 (201)
T ss_pred HHHhcCCCceEEEEEecccC-CchHHHHHHHHHHHHHH
Confidence 77778988544333222221 22334555555444443
|
|
| >PRK09739 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00029 Score=70.93 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=102.6
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCccccc---------------------cchHHHHhhcCC
Q 005109 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------EEDEYEEKLKKE 160 (714)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------~~~~~~~~l~~~ 160 (714)
|++|+|++||- .|++..+++.+.+++++.+ ..++++||.+... +-.++.+++...
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERG--HQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCC--CEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhC
Confidence 68999999997 5778999999999998875 4577777754321 112345678889
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHHhc----cCCCccCCceEEEEeccCCchhHHHH------HHHHHH-HHHHHcCC
Q 005109 161 NIVFFFLATYGDGEPTDNAARFYKWFTEK----EGGEWLQKLKYGVFGLGNRQYEHFNK------IAKVVD-EILANQGA 229 (714)
Q Consensus 161 ~~vif~~sTyG~G~~pdna~~F~~~L~~~----~~~~~l~~~~~aVFGlGds~Y~~f~~------~~k~ld-~~L~~lGa 229 (714)
+.+||++|.| .+.+|.-.+.|++++... .....|.+++..++......|++|.. +..-+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 9999999999 999999999999987510 11234778888877653334444322 222333 33344576
Q ss_pred ccccccccccCC-----CCchhhHHHHHHHHHHHHHhh
Q 005109 230 KRLVPVGLGDDD-----QCIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 230 ~~~~~~g~gD~~-----~~~e~~f~~W~~~l~~~L~~~ 262 (714)
+.+-....+... ...++.++.|.+++.....++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 197 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDAL 197 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 654222222221 335667889988876665543
|
|
| >PRK01355 azoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00036 Score=70.35 Aligned_cols=158 Identities=12% Similarity=0.105 Sum_probs=106.6
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCCeeEEecCcccccc----------------c-hHHHHhhcCCCe
Q 005109 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------------E-DEYEEKLKKENI 162 (714)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------------~-~~~~~~l~~~~~ 162 (714)
|++|+|+.||-. |++..+|+.+.+++++.+....++++||.+.... + ..+.+++...+.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 578999999985 8899999999999987654566788888654431 1 223466788899
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHhc---------cC---CCccCCceEEEEeccCCc--hhHHHHHHHHHHHHHHHcC
Q 005109 163 VFFFLATYGDGEPTDNAARFYKWFTEK---------EG---GEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILANQG 228 (714)
Q Consensus 163 vif~~sTyG~G~~pdna~~F~~~L~~~---------~~---~~~l~~~~~aVFGlGds~--Y~~f~~~~k~ld~~L~~lG 228 (714)
+||++|.| .+.+|.-.+.|++++... .. ...+.+++..|+-..... +..+.....-+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 999999999999998511 00 123678887776433321 1123455566777888889
Q ss_pred CccccccccccCCC-Cch-hhHHHHHHHHHHHHHhh
Q 005109 229 AKRLVPVGLGDDDQ-CIE-DDFSAWRELVWPELDNL 262 (714)
Q Consensus 229 a~~~~~~g~gD~~~-~~e-~~f~~W~~~l~~~L~~~ 262 (714)
.+.+.....+..+. ..+ +....|.+.-.+++.+.
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIEK 195 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHHH
Confidence 98665544433222 111 22777777666655543
|
|
| >TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00039 Score=68.45 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=88.6
Q ss_pred eEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCcccc------------c-cchHHHHhhcCCCeEEEEEeCC
Q 005109 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYA------------D-EEDEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 106 ~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~------------~-~~~~~~~~l~~~~~vif~~sTy 170 (714)
||+++.||. .|++..+++.+.+.+.+..+ ..++++|+.+++ . +-.++.+++...+.+||++|+|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g-~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLG-ISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcC-CeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC
Confidence 589999998 58999999999988765422 456777776542 1 1123456788899999999999
Q ss_pred CCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 171 GDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
+|.+|.-.+.|++|+. ...+.+++.++++.|.... +...+...+...|..+|+..+
T Consensus 80 -~~s~~~~LKn~lD~~~----~~~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 80 -RGSYTGLFKHLFDLVD----PNALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred -cCcCcHHHHHHHHhcC----HhHhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhCcccc
Confidence 9999999999999985 3458899999998875432 222233446667777888754
|
Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model. |
| >PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0012 Score=66.38 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=107.5
Q ss_pred ceEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCCeeEEecCccc--------------cc-----cchH-H-HHhhcCC
Q 005109 105 QKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDY--------------AD-----EEDE-Y-EEKLKKE 160 (714)
Q Consensus 105 ~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~--------------~~-----~~~~-~-~~~l~~~ 160 (714)
|+|+|++||-.+ ++..+++.+.+.+++.++ ..++++||.+. .. .|.. - .+.+...
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~-~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~A 79 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGP-HEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWA 79 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTT-SEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHS
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCC-CEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHc
Confidence 689999999987 589999999999999875 56889999773 00 1111 1 2667889
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHH--hc-c---C-----CCccCCceEEEEe-ccCCch--h-------HHHHHHHH
Q 005109 161 NIVFFFLATYGDGEPTDNAARFYKWFT--EK-E---G-----GEWLQKLKYGVFG-LGNRQY--E-------HFNKIAKV 219 (714)
Q Consensus 161 ~~vif~~sTyG~G~~pdna~~F~~~L~--~~-~---~-----~~~l~~~~~aVFG-lGds~Y--~-------~f~~~~k~ 219 (714)
+.+||+.|.| .+.+|.-.+.|++.+. .. - . ...|+++++.++- .|...+ . .+.....-
T Consensus 80 D~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 80 DHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred CcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 9999999999 9999999999999874 11 0 1 2457888877764 554432 2 34555566
Q ss_pred HHHHHHHcCCccccccccccCC-CCchhhHHHHHHHHHHHH
Q 005109 220 VDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 259 (714)
Q Consensus 220 ld~~L~~lGa~~~~~~g~gD~~-~~~e~~f~~W~~~l~~~L 259 (714)
+...+.-+|.+.+-....++.+ ...++..++|++++-+.|
T Consensus 159 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 159 LRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 7888888899988766655543 223778889988875543
|
The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A .... |
| >PRK13556 azoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.003 Score=64.08 Aligned_cols=155 Identities=10% Similarity=0.078 Sum_probs=102.3
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCCeeEEecCccccc-----------------------------cc
Q 005109 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----------------------------EE 150 (714)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----------------------------~~ 150 (714)
|++|+|+.||-. +++..+++.+.+.+++.++...|+++||.+.+. +-
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 578999999964 788999999999998765456678888753211 00
Q ss_pred hHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc-------cC--CCccCCceEEEEeccCCch-----hHHHHH
Q 005109 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK-------EG--GEWLQKLKYGVFGLGNRQY-----EHFNKI 216 (714)
Q Consensus 151 ~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~-------~~--~~~l~~~~~aVFGlGds~Y-----~~f~~~ 216 (714)
.++...+...+.+||++|-| ++.+|.-.+.+++|+... .. ...+.++++.|+...-..| +.+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 12335677889999999999 999999999999999721 01 1247899999986533335 334444
Q ss_pred HHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHH
Q 005109 217 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 217 ~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 260 (714)
..-+...|.-+|++.+- ....+-.....+..+++.++....+.
T Consensus 160 ~~~l~~il~~~G~~~~~-~v~~~~~~~~~~~~~~~~~~a~~~~~ 202 (208)
T PRK13556 160 VKYVASMMGFFGVTNME-TVVIEGHNQFPDKAEEIITAGLEEAA 202 (208)
T ss_pred HHHHHHHHHhcCCCcee-EEEEehhhcChhHHHHHHHHHHHHHH
Confidence 56677788888987543 22222111233445555554444443
|
|
| >PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain | Back alignment and domain information |
|---|
Probab=97.41 E-value=5.4e-05 Score=67.08 Aligned_cols=67 Identities=24% Similarity=0.239 Sum_probs=51.7
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
...+|||+.+.++. ...|+|||+|.|. .++.++|+|+.. ..|.+|+||+++.+|+ .+.+..
T Consensus 29 ~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~g 92 (99)
T PF00970_consen 29 DFKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRY---------PNGRVSRYLHQLKPGD------EVEIRG 92 (99)
T ss_dssp SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEEC---------TTSHHHHHHHTSCTTS------EEEEEE
T ss_pred ccCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEec---------cCCHHHHHHHhCCCCC------EEEEEE
Confidence 45679998766561 2469999999996 457899988743 5699999999988776 578888
Q ss_pred ecCCcc
Q 005109 552 RQSNFK 557 (714)
Q Consensus 552 ~~~~F~ 557 (714)
|.|+|.
T Consensus 93 P~G~f~ 98 (99)
T PF00970_consen 93 PYGNFT 98 (99)
T ss_dssp EESSEE
T ss_pred cccccC
Confidence 999885
|
To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A .... |
| >COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0029 Score=64.13 Aligned_cols=122 Identities=14% Similarity=0.073 Sum_probs=84.5
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcccc-----------c--------c-chHHHHhhcCCCeEEE
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA-----------D--------E-EDEYEEKLKKENIVFF 165 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~-----------~--------~-~~~~~~~l~~~~~vif 165 (714)
.|.+.|-| +|||+.+++.+++.+++.| +.++++.+.+++ . | .+++.+.+.+.+.+||
T Consensus 5 ~I~gs~r~-~G~t~~l~~~~~~g~~~~G--~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~ 81 (207)
T COG0655 5 GINGSPRS-NGNTAKLAEAVLEGAEEAG--AEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIF 81 (207)
T ss_pred EEEecCCC-CCcHHHHHHHHHHHHHHcC--CEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEE
Confidence 45556666 7999999999999999886 556676666541 0 1 1344566888999999
Q ss_pred EEeCCCCCCCCchHHHHHHH-HHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcc
Q 005109 166 FLATYGDGEPTDNAARFYKW-FTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKR 231 (714)
Q Consensus 166 ~~sTyG~G~~pdna~~F~~~-L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 231 (714)
++||| .|..+..++.|++. +...-....|.++..++|..+.+.-.........+...+...|...
T Consensus 82 gsPvy-~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~ 147 (207)
T COG0655 82 GSPVY-FGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIV 147 (207)
T ss_pred eCCee-cCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeE
Confidence 99999 99999999999999 4311112457888888887665443322234455555665556553
|
|
| >PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.075 Score=52.85 Aligned_cols=158 Identities=14% Similarity=0.133 Sum_probs=97.8
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccc----cchHHHHhhcCCCeEEEEEeCCCCCCCCc
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----EEDEYEEKLKKENIVFFFLATYGDGEPTD 177 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~----~~~~~~~~l~~~~~vif~~sTyG~G~~pd 177 (714)
..+++++|++++..+..-..-+.+.+.+++ . ..+.+.||.+.-+ |-......|...+.+||..|.| ...+|.
T Consensus 3 ~~~~kiLiI~aHP~~~~S~~n~~l~~~~~~-~--~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa 78 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSVANRVLLKPAQQ-L--EHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPA 78 (184)
T ss_pred CCCCEEEEEECCCCcccCHHHHHHHHHHHc-C--CceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcH
Confidence 356899999999986532222333333332 2 3477888764322 2222234678899999999999 888888
Q ss_pred hHHHHHHHHHh-----ccCCCccCCceEEEEe-ccCCc--hh--HHHH-----HHHHHHHHHHHcCCccccccccccCCC
Q 005109 178 NAARFYKWFTE-----KEGGEWLQKLKYGVFG-LGNRQ--YE--HFNK-----IAKVVDEILANQGAKRLVPVGLGDDDQ 242 (714)
Q Consensus 178 na~~F~~~L~~-----~~~~~~l~~~~~aVFG-lGds~--Y~--~f~~-----~~k~ld~~L~~lGa~~~~~~g~gD~~~ 242 (714)
-.+.+++..-. ...+..|+|+++.+.- .|... |. .+++ .-.-++..+.-+|.+-+-+....+...
T Consensus 79 ~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~ 158 (184)
T PRK04930 79 LLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARR 158 (184)
T ss_pred HHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCC
Confidence 99998887651 1112358899888763 44433 42 1221 112223333456888777776666655
Q ss_pred CchhhHHHHHHHHHHHHHhhh
Q 005109 243 CIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 243 ~~e~~f~~W~~~l~~~L~~~~ 263 (714)
..+++.++|.++....|...+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~ 179 (184)
T PRK04930 159 QSPEELASHARAYGDWLANPL 179 (184)
T ss_pred CCHHHHHHHHHHHHHHHhhhh
Confidence 667888888888777666543
|
|
| >TIGR02690 resist_ArsH arsenical resistance protein ArsH | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.049 Score=55.65 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=88.0
Q ss_pred ccCCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCcccc---ccc------hHHHHhhcCCCeEEEEEeC
Q 005109 101 DDGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYA---DEE------DEYEEKLKKENIVFFFLAT 169 (714)
Q Consensus 101 ~~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~---~~~------~~~~~~l~~~~~vif~~sT 169 (714)
...+.+|+++.||.. -++..+|+.+.+.+...+ ..++++|+.+++ .+. ..+...+...+.+||++|-
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g--~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPE 100 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEG--RETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPE 100 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcC--CEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCc
Confidence 345679999999874 345778888888887554 567777775433 211 1123456678999999999
Q ss_pred CCCCCCCchHHHHHHHHHhccC-CCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 170 YGDGEPTDNAARFYKWFTEKEG-GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~-~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
| +|..|.-.+.+++|+....+ ...+.++.++|+|.+-... --.+...+...|..+|+..+
T Consensus 101 Y-n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~--g~ra~~~LR~vl~~l~a~v~ 161 (219)
T TIGR02690 101 R-HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ--SFNAVNILRRLGRWMRMPTI 161 (219)
T ss_pred c-ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh--HHHHHHHHHHHHHHCCCccc
Confidence 9 99999999999999972111 1248899999998531111 12355677788888888744
|
Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known. |
| >PRK13555 azoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.18 Score=51.29 Aligned_cols=127 Identities=10% Similarity=0.144 Sum_probs=88.0
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCCeeEEecCccccc--------------------cch--------
Q 005109 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD--------------------EED-------- 151 (714)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~--------------------~~~-------- 151 (714)
|++++++++|-. -.+..+|+.+.+++++.++...|.++||-+... .++
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 578999999943 467888888888888877556677787754211 001
Q ss_pred -HHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc-------c--CCCccCCceEEEEeccCCchh-----HHHHH
Q 005109 152 -EYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK-------E--GGEWLQKLKYGVFGLGNRQYE-----HFNKI 216 (714)
Q Consensus 152 -~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~-------~--~~~~l~~~~~aVFGlGds~Y~-----~f~~~ 216 (714)
.+.+.+...+.+||++|-| ++.+|.-.+.+++|+... . ....|++++..|++.....|. .....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 2235577789999999999 999999999999998721 1 113488999999976333452 22223
Q ss_pred HHHHHHHHHHcCCcc
Q 005109 217 AKVVDEILANQGAKR 231 (714)
Q Consensus 217 ~k~ld~~L~~lGa~~ 231 (714)
..-+...|.-+|.+.
T Consensus 160 ~~yl~~il~~~Gi~~ 174 (208)
T PRK13555 160 VNYVTTVLGFWGITN 174 (208)
T ss_pred HHHHHHHHHhcCCCc
Confidence 356666777778764
|
|
| >COG0431 Predicted flavoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.28 Score=48.74 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=83.0
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecC--cccc--------cc-chHHHHhhcCCCeEEEEEeCCC
Q 005109 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDI--DDYA--------DE-EDEYEEKLKKENIVFFFLATYG 171 (714)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl--~~~~--------~~-~~~~~~~l~~~~~vif~~sTyG 171 (714)
++|++++||.. -.+..+|+.+.+.+...+. ..+...|+ .-|+ ++ -..+.+.+...+.+||++|.|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~-~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY- 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGE-VEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY- 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCc-eEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc-
Confidence 57899999965 4567788888888876542 22222221 1111 11 111335677889999999999
Q ss_pred CCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 172 DGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
+|..|.-.+..++||. ...+.++..++++.|.... +.-.+...+...|..+|+..+-
T Consensus 79 n~s~pg~lKnaiD~l~----~~~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~ 135 (184)
T COG0431 79 NGSYPGALKNAIDWLS----REALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIP 135 (184)
T ss_pred CCCCCHHHHHHHHhCC----HhHhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceecc
Confidence 9999999999999996 3368899988888654443 2333556777777788887553
|
|
| >COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.42 Score=49.99 Aligned_cols=173 Identities=20% Similarity=0.308 Sum_probs=101.9
Q ss_pred CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeE
Q 005109 488 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPII 567 (714)
Q Consensus 488 ~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piI 567 (714)
+..+|.|||.+-.. ..+++. |-+|.. ...|.+|.|-.+.++|+ .+.|.++.+.+..++. ..-++
T Consensus 84 r~~~R~YTiR~~d~-~~~e~~--vDfVlH------~~~gpas~WA~~a~~GD------~l~i~GP~g~~~p~~~-~~~~l 147 (265)
T COG2375 84 RPPQRTYTIRAVDA-AAGELD--VDFVLH------GEGGPASRWARTAQPGD------TLTIMGPRGSLVPPEA-ADWYL 147 (265)
T ss_pred CCCcccceeeeecc-cccEEE--EEEEEc------CCCCcchhhHhhCCCCC------EEEEeCCCCCCCCCCC-cceEE
Confidence 44679999986532 234444 444421 25799999999999987 4677778888776544 45699
Q ss_pred EEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchh
Q 005109 568 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 647 (714)
Q Consensus 568 mIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l 647 (714)
|||==|++--+.++|++.-.. .+...|.-.++.. |. .++. ....+ ++... .|++.. + ...+
T Consensus 148 LigDetAlPAIa~iLE~lp~~-------~~~~a~lev~d~a-d~---~~l~---~~~~l-~~~Wl-~r~~~~--~-~~ll 208 (265)
T COG2375 148 LIGDETALPAIARILETLPAD-------TPAEAFLEVDDAA-DR---DELP---SPDDL-ELEWL-ARDDAP--T-EQLL 208 (265)
T ss_pred EeccccchHHHHHHHHhCCCC-------CceEEEEEeCChH-Hh---hccC---CCCce-eEEEe-cCCCcc--c-hHHH
Confidence 999999998888888876432 3446677777665 44 2221 11222 34433 343321 1 1122
Q ss_pred hhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHH--HHHHHH
Q 005109 648 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK--AESMVK 701 (714)
Q Consensus 648 ~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~--a~~~~~ 701 (714)
.+...+ ..+-..+.+++|.|- ..|++.+++.|. .+.|++... +..|++
T Consensus 209 ~~a~~~-~~~P~~~~~vwiagE-~~~v~~~Rk~L~----~e~g~dk~~i~a~gYW~ 258 (265)
T COG2375 209 AAALAQ-AALPAGDYYVWIAGE-ASAVKAIRKFLR----NERGFDKSRVRAIGYWR 258 (265)
T ss_pred HHHHhc-ccCCCCceEEEEecc-HHHHHHHHHHHh----hhcCCCHHHhhhhhhhh
Confidence 221111 111123479999998 677777666655 455666553 333444
|
|
| >PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.94 Score=44.76 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=93.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccc----cchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----EEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~----~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
|+|++|........+-+.|.+.+... ..|++.||.+..+ |-......|...+.+||..|-| ...+|.-.+.+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~---~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~w 77 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLW 77 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc---CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHH
Confidence 88999998887666777787777643 3478888754322 1111235578899999999999 88888888888
Q ss_pred HHHHHh-----ccCCCccCCceE-EEEeccCCc--hh-----HHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHH
Q 005109 183 YKWFTE-----KEGGEWLQKLKY-GVFGLGNRQ--YE-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFS 249 (714)
Q Consensus 183 ~~~L~~-----~~~~~~l~~~~~-aVFGlGds~--Y~-----~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~ 249 (714)
++..-. ...+..|+|+++ .++-.|... |. .+...-.-+...+.-+|.+-+-|..........+++++
T Consensus 78 iD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~~~~~~~ 157 (176)
T PRK00871 78 IDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFICDDETLE 157 (176)
T ss_pred HHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccCCHHHHH
Confidence 876541 112345888876 455556542 31 12222334445555678887666554433333455565
Q ss_pred HHHHHHHHHHHh
Q 005109 250 AWRELVWPELDN 261 (714)
Q Consensus 250 ~W~~~l~~~L~~ 261 (714)
+..++....|.+
T Consensus 158 ~~~~~~~~~L~~ 169 (176)
T PRK00871 158 GQARHYKQRLLE 169 (176)
T ss_pred HHHHHHHHHHHh
Confidence 555555444443
|
|
| >KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.16 Score=48.74 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=81.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc-----------chHH----HHhhcCCCeEEEEEe
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------EDEY----EEKLKKENIVFFFLA 168 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------~~~~----~~~l~~~~~vif~~s 168 (714)
+.+|.|+|-|.+|.-+.+|+...+.+.+.++. .++..+.+.-.+ +.+| .+.|.+++.++|+.|
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a~ge--A~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~P 78 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIESAGGE--ATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFP 78 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhccCCe--eEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeeccc
Confidence 35789999999999999999999988877643 233333221100 0001 245788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCcccccccc
Q 005109 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGL 237 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~ 237 (714)
|- .|.+|..++.||+.-...=....|.|+..++|=.+-++= .+=- .+..--..|.-.|. .++|+|.
T Consensus 79 TR-fG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~-talta~t~LvHHGm-ifVPlGY 145 (203)
T KOG3135|consen 79 TR-FGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQET-TALTAITQLVHHGM-IFVPLGY 145 (203)
T ss_pred cc-ccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCCchHh-HHHHHHHHHHhcce-EEEeccc
Confidence 99 999999999999963211113458899999996544332 1111 11121223333454 4668874
|
|
| >COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.19 E-value=5.1 Score=40.09 Aligned_cols=157 Identities=13% Similarity=0.088 Sum_probs=94.4
Q ss_pred ceEEEEEeCCC-chHHHHHHHHHHHHHhhcCCCe-----eEEecC----cc--ccccchHHHHhhcCCCeEEEEEeCCCC
Q 005109 105 QKVTIFFGTQT-GTAEGFAKALADEARARYDKAI-----FKVVDI----DD--YADEEDEYEEKLKKENIVFFFLATYGD 172 (714)
Q Consensus 105 ~~v~I~YgSqt-Gtae~~A~~la~~l~~~~~~~~-----v~v~dl----~~--~~~~~~~~~~~l~~~~~vif~~sTyG~ 172 (714)
++|+|+||-.- ..+-..++...+.+.+.+.... ....|+ .| +..|-..-.+++...+.+||.-|-| =
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw-W 79 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW-W 79 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch-h
Confidence 57999999985 3333444444444444432110 111111 22 2322222246788899999999999 6
Q ss_pred CCCCchHHHHHHHHH--h--c-cCC----CccCCceEEEEeccCCchhHHHHHHHH---------HHHHHHHcCCccccc
Q 005109 173 GEPTDNAARFYKWFT--E--K-EGG----EWLQKLKYGVFGLGNRQYEHFNKIAKV---------VDEILANQGAKRLVP 234 (714)
Q Consensus 173 G~~pdna~~F~~~L~--~--~-~~~----~~l~~~~~aVFGlGds~Y~~f~~~~k~---------ld~~L~~lGa~~~~~ 234 (714)
+..|.-.+.+++..- . - ..+ ..|.|+++-++..-+..-+.|...+.. +.-.+.-.|...+-+
T Consensus 80 ~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 159 (189)
T COG2249 80 YSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWLPP 159 (189)
T ss_pred ccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccccc
Confidence 677778888888765 1 1 111 468999988887655543444333332 223444567766666
Q ss_pred cccccCCCCchhhHHHHHHHHHHHHHhh
Q 005109 235 VGLGDDDQCIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 235 ~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 262 (714)
...+..+...++...+|.+++-..|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 160 FTFYGADVIDDETRAAYLERYRAHLKEI 187 (189)
T ss_pred eeEeecccCCHHHHHHHHHHHHHHHHhh
Confidence 6666666677889999998887766654
|
|
| >cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=87.87 E-value=0.61 Score=49.21 Aligned_cols=42 Identities=48% Similarity=0.850 Sum_probs=37.1
Q ss_pred EeeeecccCCCCCCceeEEEEEecC-CCCccCCCCeeEEeccC
Q 005109 319 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 360 (714)
Q Consensus 319 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~v~p~N 360 (714)
+++++.+++|+|.++++|++|++++ ..+.|+||.++.|.+++
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC
Confidence 4568889999999999999999875 67899999999999764
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t |
| >KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.52 E-value=1.4 Score=48.64 Aligned_cols=164 Identities=10% Similarity=-0.030 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCccCCCCccccccCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeE
Q 005109 60 TSIAVLIGCVVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFK 139 (714)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~ 139 (714)
.+..+++-.++++.+++..+.+-.....+.+ ..+++....-.-++|.=+=++|-+..||+.|++.+.+.+..
T Consensus 317 d~pevil~gal~lhy~mikqmkgvpgvk~Er----~~ea~evrhcalslVgepi~yp~in~f~k~lH~k~issflv---- 388 (601)
T KOG1160|consen 317 DAPEVILKGALYLHYNMIKQMKGVPGVKAER----FEEAEEVRHCALSLVGEPIMYPEINPFAKLLHQKLISSFLV---- 388 (601)
T ss_pred CCchhhhHHHHHHHHHHHHHhhcCCCcCHHH----HHhhhhhhhheeeeecccccchhhhHHHHHHHhccchHHhc----
Confidence 3456666667788777655322111111000 01122222334567788889999999999999988765421
Q ss_pred EecCccccccchHHHHhh-cCCCeEEEEEeCCCCCCCCchHHHHHHHHH---hc-cCCCccCCceEEEEeccCCch--hH
Q 005109 140 VVDIDDYADEEDEYEEKL-KKENIVFFFLATYGDGEPTDNAARFYKWFT---EK-EGGEWLQKLKYGVFGLGNRQY--EH 212 (714)
Q Consensus 140 v~dl~~~~~~~~~~~~~l-~~~~~vif~~sTyG~G~~pdna~~F~~~L~---~~-~~~~~l~~~~~aVFGlGds~Y--~~ 212 (714)
.++. + +++..-...+ .=+-.+++.+=|.--|.+.+--++||+||. .. ..+....-.|+++.|.||+.= ..
T Consensus 389 -tnaq-~-pe~~rnvk~vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K~qrtvyRlTlVkg~n~dd~~Ay 465 (601)
T KOG1160|consen 389 -TNAQ-F-PEDIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKALKKKQQRTVYRLTLVKGWNSDDLPAY 465 (601)
T ss_pred -cccc-C-hHHHhchhhhheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHHHHHhhcceEEEEEEeccccccccHHH
Confidence 1111 1 1110000111 123345666667767889999999999997 11 122345557899999999884 78
Q ss_pred HHHHHHHHHHHHHHcCCccccc
Q 005109 213 FNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 213 f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
||.+++-+-.+++-+||+-..+
T Consensus 466 fnlv~rglp~fieVkGvty~ge 487 (601)
T KOG1160|consen 466 FNLVSRGLPDFIEVKGVTYCGE 487 (601)
T ss_pred HHHHhccCCceEEEeceeEecc
Confidence 9999999999999889986644
|
|
| >KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.15 E-value=0.37 Score=53.42 Aligned_cols=62 Identities=32% Similarity=0.545 Sum_probs=53.9
Q ss_pred EEeccCCch-h-----HHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHHHhhh
Q 005109 202 VFGLGNRQY-E-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 202 VFGlGds~Y-~-----~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~~~ 263 (714)
|||+||+.| + .|++-.|.+..+|.+++|..++++|+|+|.. +.......|--.||++|..-.
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~ 70 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGI 70 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCC
Confidence 699999998 3 6999999999999999999999999999854 567788899999999987544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 714 | ||||
| 3qe2_A | 618 | Crystal Structure Of Human Nadph-Cytochrome P450 Re | 1e-118 | ||
| 3qfr_A | 618 | Crystal Structure Of Human Nadph-Cytochrome P450 Re | 1e-118 | ||
| 1amo_A | 615 | Three-Dimensional Structure Of Nadph-Cytochrome P45 | 1e-118 | ||
| 3qfc_A | 618 | Crystal Structure Of Human Nadph-Cytochrome P450 (V | 1e-118 | ||
| 3es9_A | 618 | Nadph-Cytochrome P450 Reductase In An Open Conforma | 1e-117 | ||
| 1ja0_A | 620 | Cypor-W677x Length = 620 | 1e-117 | ||
| 1j9z_A | 622 | Cypor-W677g Length = 622 | 1e-117 | ||
| 1ja1_A | 622 | Cypor-Triple Mutant Length = 622 | 1e-116 | ||
| 3ojx_A | 622 | Disulfide Crosslinked Cytochrome P450 Reductase Ina | 1e-116 | ||
| 3fjo_A | 637 | Structure Of Chimeric Yh Cpr Length = 637 | 1e-106 | ||
| 3qfs_A | 458 | Crystal Structure Of Nadph-Cytochrome P450 Reductas | 9e-87 | ||
| 3qft_A | 458 | Crystal Structure Of Nadph-Cytochrome P450 Reductas | 5e-86 | ||
| 2bpo_A | 682 | Crystal Structure Of The Yeast Cpr Triple Mutant: D | 7e-73 | ||
| 2bf4_A | 682 | A Second Fmn-Binding Site In Yeast Nadph-Cytochrome | 5e-71 | ||
| 1tll_A | 688 | Crystal Structure Of Rat Neuronal Nitric-Oxide Synt | 1e-64 | ||
| 2qtz_A | 539 | Crystal Structure Of The Nadp+-Bound Fad-Containing | 4e-53 | ||
| 4dqk_A | 391 | Crystal Structure Of The Fad Binding Domain Of Cyto | 2e-52 | ||
| 4dql_A | 393 | Crystal Structure Of The Fad Binding Domain Of Cyto | 3e-52 | ||
| 2qtl_A | 539 | Crystal Structure Of The Fad-Containing Fnr-Like Mo | 6e-52 | ||
| 1f20_A | 435 | Crystal Structure Of Rat Neuronal Nitric-Oxide Synt | 6e-51 | ||
| 1ddg_A | 374 | Crystal Structure Of Sir-Fp60 Length = 374 | 3e-46 | ||
| 1b1c_A | 181 | Crystal Structure Of The Fmn-Binding Domain Of Huma | 3e-27 | ||
| 1bvy_F | 191 | Complex Of The Heme And Fmn-Binding Domains Of The | 2e-12 | ||
| 3lo8_A | 311 | Crystal Structure Of The Oxidized Form Of Ferredoxi | 1e-11 | ||
| 3lvb_A | 311 | Crystal Structure Of The Ferredoxin:nadp+ Reductase | 1e-11 | ||
| 1jb9_A | 316 | Crystal Structure Of The Ferredoxin:nadp+ Reductase | 2e-11 | ||
| 3hr4_A | 219 | Human Inos Reductase And Calmodulin Complex Length | 2e-11 | ||
| 3vo1_A | 314 | Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ | 2e-10 | ||
| 2b5o_A | 402 | Ferredoxin-nadp Reductase Length = 402 | 3e-10 | ||
| 3vo2_A | 310 | Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ | 4e-10 | ||
| 1gaq_A | 314 | Crystal Structure Of The Complex Between Ferredoxin | 8e-10 | ||
| 4af6_A | 308 | Pea Fnr L268v Mutant Length = 308 | 5e-09 | ||
| 3mhp_A | 296 | Fnr-Recruitment To The Thylakoid Length = 296 | 6e-09 | ||
| 1qga_A | 308 | Pea Fnr Y308w Mutant In Complex With Nadp+ Length = | 6e-09 | ||
| 1qg0_A | 308 | Wild-type Pea Fnr Length = 308 | 7e-09 | ||
| 1qfy_A | 308 | Pea Fnr Y308s Mutant In Complex With Nadp+ Length = | 7e-09 | ||
| 1w35_A | 304 | Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Leng | 3e-08 | ||
| 1sm4_A | 296 | Crystal Structure Analysis Of The Ferredoxin-Nadp+ | 3e-08 | ||
| 1bx0_A | 314 | Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta | 5e-08 | ||
| 1fnb_A | 314 | Refined Crystal Structure Of Spinach Ferredoxin Red | 5e-08 | ||
| 1quf_A | 304 | X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+ | 5e-08 | ||
| 1frq_A | 314 | Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta | 5e-08 | ||
| 1bx1_A | 314 | Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta | 5e-08 | ||
| 2x3u_A | 303 | Ferredoxin-Nadp Reductase Mutant With Tyr 303 Repla | 7e-08 | ||
| 1ewy_A | 303 | Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reduct | 7e-08 | ||
| 1e64_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 8e-08 | ||
| 1go2_A | 304 | Structure Of Ferredoxin-nadp+ Reductase With Lys 72 | 1e-07 | ||
| 4af7_A | 308 | Pea Fnr C266m Mutant Length = 308 | 1e-07 | ||
| 1qgz_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Leu 78 Repla | 1e-07 | ||
| 1ogj_A | 303 | Ferredoxin:nadp+ Reductase Mutant With Leu 263 Repl | 1e-07 | ||
| 1frn_A | 314 | The Involvement Of Ser96 In The Catalytic Mechanism | 1e-07 | ||
| 1gjr_A | 304 | Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By | 1e-07 | ||
| 1qh0_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutat | 1e-07 | ||
| 1que_A | 303 | X-Ray Structure Of The Ferredoxin:nadp+ Reductase F | 1e-07 | ||
| 1e63_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 1e-07 | ||
| 1bjk_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Arg 264 Repl | 1e-07 | ||
| 1qgy_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 1e-07 | ||
| 1gr1_A | 303 | Structure Of Ferredoxin-Nadp+ Reductase With Glu 13 | 1e-07 | ||
| 1b2r_A | 304 | Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Leng | 1e-07 | ||
| 1w34_A | 304 | Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Lengt | 1e-07 | ||
| 1e62_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 1e-07 | ||
| 1h85_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Val 136 Repl | 2e-07 | ||
| 2bsa_A | 303 | Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Compl | 2e-07 | ||
| 1bqe_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl | 2e-07 | ||
| 2xnc_A | 315 | Crystal Structure Of An Engineered Ferredoxin Nadp | 2e-07 | ||
| 2vyq_A | 304 | Ferredoxin:nadp Reductase Mutant With Thr 155 Repla | 3e-07 | ||
| 1ogi_A | 303 | Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl | 4e-07 | ||
| 1h42_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl | 5e-07 | ||
| 2bmw_A | 304 | Ferredoxin: Nadp+reductase Mutant With Thr 155 Repl | 5e-07 | ||
| 2rc5_A | 314 | Refined Structure Of Fnr From Leptospira Interrogan | 1e-06 | ||
| 1ykg_A | 167 | Solution Structure Of The Flavodoxin-Like Domain Fr | 2e-06 | ||
| 3jqq_A | 316 | Crystal Structure Of The H286k Mutant Of Ferredoxin | 9e-05 | ||
| 3jqp_A | 316 | Crystal Structure Of The H286l Mutant Of Ferredoxin | 1e-04 | ||
| 2ok7_A | 316 | Ferredoxin-Nadp+ Reductase From Plasmodium Falcipar | 1e-04 |
| >pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase Length = 618 | Back alignment and structure |
|
| >pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase (R457h Mutant) Length = 618 | Back alignment and structure |
|
| >pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450 Reductase: Prototype For Fmn-And Fad-Containing Enzymes Length = 615 | Back alignment and structure |
|
| >pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e Mutant) Length = 618 | Back alignment and structure |
|
| >pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation Length = 618 | Back alignment and structure |
|
| >pdb|1JA0|A Chain A, Cypor-W677x Length = 620 | Back alignment and structure |
|
| >pdb|1J9Z|A Chain A, Cypor-W677g Length = 622 | Back alignment and structure |
|
| >pdb|1JA1|A Chain A, Cypor-Triple Mutant Length = 622 | Back alignment and structure |
|
| >pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive Length = 622 | Back alignment and structure |
|
| >pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr Length = 637 | Back alignment and structure |
|
| >pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH Domain) Length = 458 | Back alignment and structure |
|
| >pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH DOMAIN And R457h Mutant) Length = 458 | Back alignment and structure |
|
| >pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g, Y75f, K78a. Length = 682 | Back alignment and structure |
|
| >pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450 Reductase Suggests A Novel Mechanism Of Electron Transfer By Diflavin Reductases. Length = 682 | Back alignment and structure |
|
| >pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase Reductase Module At 2.3 A Resolution. Length = 688 | Back alignment and structure |
|
| >pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539 | Back alignment and structure |
|
| >pdb|4DQK|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 Length = 391 | Back alignment and structure |
|
| >pdb|4DQL|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 In Complex With Nadp+ Length = 393 | Back alignment and structure |
|
| >pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539 | Back alignment and structure |
|
| >pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase FadNADP+ Domain At 1.9a Resolution Length = 435 | Back alignment and structure |
|
| >pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60 Length = 374 | Back alignment and structure |
|
| >pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Domain Of Human Cytochrome P450 Reductase At 1.93a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|1BVY|F Chain F, Complex Of The Heme And Fmn-Binding Domains Of The Cytochrome P450(Bm-3) Length = 191 | Back alignment and structure |
|
| >pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+ Reductase From Maize Root At 1.05 Angstroms Length = 311 | Back alignment and structure |
|
| >pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms - Test Set Withheld Length = 311 | Back alignment and structure |
|
| >pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms Length = 316 | Back alignment and structure |
|
| >pdb|3HR4|A Chain A, Human Inos Reductase And Calmodulin Complex Length = 219 | Back alignment and structure |
|
| >pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Ii Length = 314 | Back alignment and structure |
|
| >pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase Length = 402 | Back alignment and structure |
|
| >pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Iii Length = 310 | Back alignment and structure |
|
| >pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 314 | Back alignment and structure |
|
| >pdb|4AF6|A Chain A, Pea Fnr L268v Mutant Length = 308 | Back alignment and structure |
|
| >pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid Length = 296 | Back alignment and structure |
|
| >pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+ Length = 308 | Back alignment and structure |
|
| >pdb|1QG0|A Chain A, Wild-type Pea Fnr Length = 308 | Back alignment and structure |
|
| >pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+ Length = 308 | Back alignment and structure |
|
| >pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Length = 304 | Back alignment and structure |
|
| >pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+ Reductase From Paprika Length = 296 | Back alignment and structure |
|
| >pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312l Length = 314 | Back alignment and structure |
|
| >pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'- Phospho-5'-Amp Bound States Length = 314 | Back alignment and structure |
|
| >pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 2.25 Angstroms Length = 304 | Back alignment and structure |
|
| >pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312a Length = 314 | Back alignment and structure |
|
| >pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312q Length = 314 | Back alignment and structure |
|
| >pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By Phe (Y303f) Length = 303 | Back alignment and structure |
|
| >pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase Complex Length = 303 | Back alignment and structure |
|
| >pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Gln (K75q) Length = 304 | Back alignment and structure |
|
| >pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72 Replaced By Glu (k72e) Length = 304 | Back alignment and structure |
|
| >pdb|4AF7|A Chain A, Pea Fnr C266m Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By Asp (L78d) Length = 295 | Back alignment and structure |
|
| >pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By Pro (L263p) Length = 303 | Back alignment and structure |
|
| >pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of Ferredoxin-Nadp+ Reductase: Structure-Function Relationship As Studied By Site-Directed Mutagenesis And X- Ray Crystallography Length = 314 | Back alignment and structure |
|
| >pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By Cocrystallization Length = 304 | Back alignment and structure |
|
| >pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By Asp And Leu 78 Mutated By Asp Length = 295 | Back alignment and structure |
|
| >pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms Length = 303 | Back alignment and structure |
|
| >pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Ser (K75s) Length = 304 | Back alignment and structure |
|
| >pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By Glu (r264e) Length = 295 | Back alignment and structure |
|
| >pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Glu (K75e) Length = 295 | Back alignment and structure |
|
| >pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139 Replaced By Lys (E139k) Length = 303 | Back alignment and structure |
|
| >pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Length = 304 | Back alignment and structure |
|
| >pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Length = 304 | Back alignment and structure |
|
| >pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Arg (K75r) Length = 304 | Back alignment and structure |
|
| >pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By Leu (V136l) Length = 295 | Back alignment and structure |
|
| >pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed With Nadp Length = 303 | Back alignment and structure |
|
| >pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly (T155g) Length = 295 | Back alignment and structure |
|
| >pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp Reductase (Fnr) From Pisum Sativum Length = 315 | Back alignment and structure |
|
| >pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s) Length = 304 | Back alignment and structure |
|
| >pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly And Ala 160 Replaced By Thr (T155g-A160t) Length = 303 | Back alignment and structure |
|
| >pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro (T155g-A160t-L263p) Length = 304 | Back alignment and structure |
|
| >pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro, Arg 264 Replaced By Pro And Gly 265 Replaced By Pro (T155g- A160t-L263p-R264p-G265p) Length = 304 | Back alignment and structure |
|
| >pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Length = 314 | Back alignment and structure |
|
| >pdb|1YKG|A Chain A, Solution Structure Of The Flavodoxin-Like Domain From The Escherichia Coli Sulfite Reductase Length = 167 | Back alignment and structure |
|
| >pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum In Complex With 2'p- Amp Length = 316 | Back alignment and structure |
|
| >pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With 2'p-Amp Length = 316 | Back alignment and structure |
|
| >pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With 2'p-Amp Length = 316 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 714 | |||
| 3qe2_A | 618 | CPR, P450R, NADPH--cytochrome P450 reductase; cypo | 0.0 | |
| 1tll_A | 688 | Nitric-oxide synthase, brain; reductase module, FM | 0.0 | |
| 2bpo_A | 682 | CPR, P450R, NADPH-cytochrom P450 reductase; NADPH- | 0.0 | |
| 3qfs_A | 458 | CPR, P450R, NADPH--cytochrome P450 reductase; flav | 0.0 | |
| 2qtl_A | 539 | MSR;, methionine synthase reductase; alpha-beta-al | 0.0 | |
| 4dql_A | 393 | Bifunctional P-450/NADPH-P450 reductase; rossmann | 0.0 | |
| 1f20_A | 435 | Nitric-oxide synthase; nitric-xoide synthase, redu | 0.0 | |
| 1ddg_A | 374 | Sulfite reductase (NADPH) flavoprotein alpha- comp | 0.0 | |
| 3lo8_A | 311 | Ferredoxin--NADP reductase; electron transport, ox | 1e-104 | |
| 1fnb_A | 314 | Ferredoxin-NADP+ reductase; oxidoreductase (NADP+( | 1e-103 | |
| 2bmw_A | 304 | Ferredoxin--NADP reductase; oxidoreductase, flavop | 1e-103 | |
| 2rc5_A | 314 | Ferredoxin-NADP reductase; FAD, oxidoreductase; HE | 1e-103 | |
| 2b5o_A | 402 | FNR, ferredoxin--NADP reductase; complex with FAD, | 1e-95 | |
| 2b5o_A | 402 | FNR, ferredoxin--NADP reductase; complex with FAD, | 2e-05 | |
| 3jqq_A | 316 | Ferredoxin NADP reductase; FAD, oxidoreductase; HE | 1e-91 | |
| 1bvy_F | 191 | Protein (cytochrome P450 BM-3); fatty acid monooxy | 3e-62 | |
| 3hr4_A | 219 | Nitric oxide synthase, inducible; inducible nitric | 3e-62 | |
| 1ykg_A | 167 | SIR-FP, sulfite reductase [NADPH] flavoprotein alp | 5e-57 | |
| 2hna_A | 147 | Protein MIOC, flavodoxin; alpha-beta sandwich, fla | 1e-47 | |
| 1f4p_A | 147 | Flavodoxin; electron transport, flavoprotein, FMN, | 5e-33 | |
| 2fcr_A | 173 | Flavodoxin; electron transport; HET: FMN; 1.80A {C | 2e-26 | |
| 3f6r_A | 148 | Flavodoxin; FMN binding, oxidized, electron transp | 5e-25 | |
| 2wc1_A | 182 | Flavodoxin; electron transport, flavoprotein; HET: | 1e-23 | |
| 1yob_A | 179 | Flavodoxin 2, flavodoxin II; alpha-beta fold, non- | 5e-20 | |
| 1ag9_A | 175 | Flavodoxin; electron transport, reductive activati | 3e-19 | |
| 1czn_A | 169 | Flavodoxin; FMN binding, redox potential, electron | 1e-17 | |
| 2bmv_A | 164 | Flavodoxin; electron transport, flavoprotein, FMN, | 4e-16 | |
| 1obo_A | 169 | Flavodoxin; electron transfer, flavoprotein, elect | 4e-16 | |
| 1gvh_A | 396 | Flavohemoprotein; oxidoreductase, NADP, heme, flav | 6e-12 | |
| 1cqx_A | 403 | Flavohemoprotein; globin fold, six-stranded antipa | 1e-11 | |
| 1tvc_A | 250 | Methane monooxygenase component C, methane monooxy | 1e-10 | |
| 1krh_A | 338 | Benzoate 1,2-dioxygenase reductase; alpha-beta, FA | 4e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 | |
| 1qfj_A | 232 | Protein (flavin reductase); riboflavin, ferredoxin | 1e-09 | |
| 2r6h_A | 290 | NADH:ubiquinone oxidoreductase, Na translocating, | 4e-06 | |
| 2fz5_A | 137 | Flavodoxin; alpha/beta doubly-wound topology, non- | 1e-05 | |
| 2qdx_A | 257 | Ferredoxin reductase; oxidoreductase; HET: FAD; 1. | 2e-05 | |
| 2bgi_A | 272 | Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi | 4e-05 | |
| 4fk8_A | 271 | Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st | 1e-04 | |
| 2cnd_A | 270 | NADH-dependent nitrate reductase; nitrate assimila | 6e-04 |
| >3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* Length = 618 | Back alignment and structure |
|---|
Score = 807 bits (2086), Expect = 0.0
Identities = 232/618 (37%), Positives = 356/618 (57%), Gaps = 15/618 (2%)
Query: 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK 158
++ + + +F+G+QTGTAE FA L+ +A + D ++Y + ++
Sbjct: 13 KMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRG--MSADPEEYDLADLSSLPEID 70
Query: 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAK 218
+V F +ATYG+G+PTDNA FY W E + L +K+ VFGLGN+ YEHFN + K
Sbjct: 71 -NALVVFCMATYGEGDPTDNAQDFYDWLQETD--VDLSGVKFAVFGLGNKTYEHFNAMGK 127
Query: 219 VVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTA 278
VD+ L GA+R+ +GLGDDD +E+DF WRE W + + S
Sbjct: 128 YVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWLAVCEHFGVEATGEESSIR-QY 186
Query: 279 AISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLE 338
+ + + + N +DA++P + V ++L ++R HLE
Sbjct: 187 ELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKL-NQGTERHLMHLE 245
Query: 339 FDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 398
DI+ + + YE+GDHV VY N S V + +LG D SL+ E+
Sbjct: 246 LDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKK-----H 300
Query: 399 PTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPA--GKDEYAQW 456
P P S RTALT Y D+ + P+ + L LA +AS+P+E + LR +AS + GK+ Y W
Sbjct: 301 PFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSW 360
Query: 457 IVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE 516
+V ++R +L ++ + PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ +V
Sbjct: 361 VVEARRHILAILQDCPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEY 419
Query: 517 KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLA 576
+T GR++KG+ + W++ P+ ++ + P+FVR+S F+LP A P+IM+GPGTG+A
Sbjct: 420 ETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVA 479
Query: 577 PFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 636
PF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFSRE
Sbjct: 480 PFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSRE 539
Query: 637 GPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 696
K YVQH + + +W ++ GA++YVCGDA++MARDV T + IV E G+++ ++A
Sbjct: 540 QSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQA 599
Query: 697 ESMVKNLQMTGRYLRDVW 714
+K L GRY DVW
Sbjct: 600 VDYIKKLMTKGRYSLDVW 617
|
| >1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 Length = 688 | Back alignment and structure |
|---|
Score = 728 bits (1882), Expect = 0.0
Identities = 190/664 (28%), Positives = 302/664 (45%), Gaps = 73/664 (10%)
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIV 163
+ K TI + T+TG ++ +AK L + + +D K + +++Y L+ E +V
Sbjct: 11 RVKATILYATETGKSQAYAKTLCEIFKHAFDA---KAMSMEEYDIVH------LEHEALV 61
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEK---------------------------------- 189
+T+G+G+P +N +F E
Sbjct: 62 LVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGP 121
Query: 190 ------EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC 243
E L +++ VFGLG+R Y HF VD +L G +R++ + GD+
Sbjct: 122 DLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCG 181
Query: 244 IEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNA 303
E+ F W + V+ ++ DD + P + IS R + + ++
Sbjct: 182 QEEAFRTWAKKVFKAACDVFCVGDD-VNIEKPNNSLISNDRSWKRNKFRLTYVAEAPDLT 240
Query: 304 NGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLS 362
G + + + + R+ L +P S RS + G L Y+ GDH+GV+ N
Sbjct: 241 QGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHE 300
Query: 363 ETVEEALSLLGLSPD--TYFSLHTDKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLL 417
+ V + L +P + +E T LG PPC++ A Y D+
Sbjct: 301 DLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDIT 360
Query: 418 SSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 477
+ P L A+ A++ E RL L+ G EY +W +++EV+ EFPS + P
Sbjct: 361 TPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPTMVEVLEEFPSIQMP 418
Query: 478 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNS 535
+ + LQPRYYSISSSP + P +H+T A+V T G VH G+CS+W+
Sbjct: 419 ATLLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRI 477
Query: 536 LPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA-LQEAGA 593
P FVR + +F LP + +VP I++GPGTG+APFR F Q+R +Q G
Sbjct: 478 QA------DDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGM 531
Query: 594 ELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE-GPTKEYVQHKMMEKSS 652
P +L FGCR K+D+IY +E G +L A+SRE K+YVQ + E+ +
Sbjct: 532 NPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLA 591
Query: 653 D-IWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 710
+ ++ L E G ++YVCGD MA DV + + I+ +QG L A + L+ RY
Sbjct: 592 ESVYRALKEQGGHIYVCGDVT-MAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYH 650
Query: 711 RDVW 714
D++
Sbjct: 651 EDIF 654
|
| >2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* Length = 682 | Back alignment and structure |
|---|
Score = 726 bits (1876), Expect = 0.0
Identities = 192/662 (29%), Positives = 319/662 (48%), Gaps = 59/662 (8%)
Query: 94 KEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY 153
++ V + + + + +QTGTAEGFAKA + E A+++ + D+++Y ++
Sbjct: 39 RDIAQVVTENNKNYLVLYASQTGTAEGFAKAFSKELVAKFNLNV-MCADVENY-----DF 92
Query: 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHF 213
E IV F++TYG+G+ D A F + E G L L+Y +FGLGN YE F
Sbjct: 93 ESLNDVPVIVSIFISTYGEGDFPDGAVNFEDFICNAEAG-ALSNLRYNMFGLGNSTYEFF 151
Query: 214 NKIAKVVDEILANQGAKRLVPVGLGDDDQC-IEDDFSAWRELVWPELDNLLRDDDDPTTV 272
N AK ++ L+ GA RL +G DD ++D+ AW++ + L + L D+
Sbjct: 152 NGAAKKAEKHLSAAGAIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELHLDEQEAKF 211
Query: 273 STPYTAAISEYRVVFYDNADASVGE------KSWGNANGHAVYDAQHPCRSNVAVRKELH 326
++ + + + S + +D P + + +EL
Sbjct: 212 TSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVKSRELF 271
Query: 327 TPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDK 386
+ + DR+C H EFD++G+ + Y TGDH+ V+ N E VE+ LS+ L P+T F L
Sbjct: 272 SSN-DRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLK--- 327
Query: 387 EDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLAS 446
PL + P P ++ A+ Y ++ + +L A + ++L L+
Sbjct: 328 ----PLDPTVKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSK 383
Query: 447 PAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGV---FFAAIVPRLQPRYYSISSSPRVA 503
KD++A I + ++ + + V F VP++ PRYYSISSS
Sbjct: 384 --DKDQFAVEITSKYFNIADALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSSLSE 441
Query: 504 PSRIHVTCALVYEKTPT---GRVHKGLCSTWMKNSLPMEKSNDCSW-------------- 546
+HVT + P G+ + ++N + + + +
Sbjct: 442 KQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRK 501
Query: 547 ------APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE------ 594
P+ VR+SNF+LP++ P+IMIGPGTG+APFRGF++ER A E+ +
Sbjct: 502 LFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVS 561
Query: 595 LGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLIVAFSR-EGPTKEYVQHKMMEKSS 652
LG +LF+G RN D++Y+DE + + +++VA SR K YVQ K+ +
Sbjct: 562 LGKHILFYGSRNTD-DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYED 620
Query: 653 DIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRD 712
++ M++ GA++YVCGDAK MA+ V L I+ S+ + +A ++K L+ +GRY D
Sbjct: 621 QVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQED 680
Query: 713 VW 714
VW
Sbjct: 681 VW 682
|
| >3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A* Length = 458 | Back alignment and structure |
|---|
Score = 644 bits (1664), Expect = 0.0
Identities = 176/461 (38%), Positives = 273/461 (59%), Gaps = 14/461 (3%)
Query: 261 NLLRDDDDPTTVSTPYTAAISEYRVVFYDNADAS---VGE--KSWGNANGHAVYDAQHPC 315
+ V +I +Y +V + + DA+ +GE + N +DA++P
Sbjct: 4 SHHHHHHSSGLVPRGSHMSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPF 63
Query: 316 RSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS 375
+ V ++L ++R HLE DI+ + + YE+GDHV VY N S V + +LG
Sbjct: 64 LAAVTTNRKL-NQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGAD 122
Query: 376 PDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDP 435
D SL+ E+ P P S RTALT Y D+ + P+ + L LA +AS+P
Sbjct: 123 LDVVMSLNNLDEESNKK-----HPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEP 177
Query: 436 TEADRLRHLASPAG--KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 493
+E + LR +AS +G K+ Y W+V ++R +L ++ + PS +PP+ ++PRLQ RY
Sbjct: 178 SEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPID-HLCELLPRLQARY 236
Query: 494 YSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 553
YSI+SS +V P+ +H+ +V +T GR++KG+ + W++ P+ ++ + P+FVR+
Sbjct: 237 YSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRK 296
Query: 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 613
S F+LP A P+IM+GPGTG+APF GF+QER L++ G E+G +LL++GCR DY+Y
Sbjct: 297 SQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLY 356
Query: 614 EDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSM 673
+EL F + GAL+QL VAFSRE K YVQH + + +W ++ GA++YVCGDA++M
Sbjct: 357 REELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNM 416
Query: 674 ARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
ARDV T + IV E G+++ ++A +K L GRY DVW
Sbjct: 417 ARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457
|
| >2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* Length = 539 | Back alignment and structure |
|---|
Score = 627 bits (1620), Expect = 0.0
Identities = 155/545 (28%), Positives = 254/545 (46%), Gaps = 35/545 (6%)
Query: 197 KLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 256
++G + + + + + I + R G D + ++ ++ + V
Sbjct: 2 SPEFGALPVASPASLRTDLVKSELLHIESQVELLRFDDSGRKDSEVLKQNAVNSNQSNVV 61
Query: 257 PEL--DNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHP 314
E +L R + S EY V + E + +V A
Sbjct: 62 IEDFESSLTRSVPPLSQASLNIPGLPPEYLQVH-------LQESLGQEESQVSVTSADPV 114
Query: 315 CRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGL 374
+ ++ +L T + ++ +E DI+ T +Y+ GD V C N V+ L L L
Sbjct: 115 FQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQL 174
Query: 375 SPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHAS 433
+ + T +TLP P CSL+ T ++ + PKK+ L AL + S
Sbjct: 175 EDKREHCVLLKIKADTKKKGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTS 234
Query: 434 DPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 493
D E RL+ L S G +Y++++ + LL+++ FPS +PPL + + P+LQPR
Sbjct: 235 DSAEKRRLQELCSKQGAADYSRFVRDACACLLDLLLAFPSCQPPLSLLLEHL-PKLQPRP 293
Query: 494 YSISSSPRVAPSRIHVTCALVYEKTP--TGRVHKGLCSTWMKNSLPMEKSNDCSWA---- 547
YS +SS P ++H +V + T + KG+C+ W+ + + +
Sbjct: 294 YSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDS 353
Query: 548 --------PIFVRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE--LG 596
IF R +N F LP D +PIIM+GPGTG+APF GFLQ R LQE + G
Sbjct: 354 GKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFG 413
Query: 597 PSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT------KEYVQHKMMEK 650
LFFGCR++ DY++ EL +F++ G L+ L V+FSR+ P +YVQ +
Sbjct: 414 AMWLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLH 473
Query: 651 SSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRY 709
+ + L E ++YVCGDAK+MA+DVH L I+ ++ ++ +A + L+ RY
Sbjct: 474 GQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRY 533
Query: 710 LRDVW 714
L+D+W
Sbjct: 534 LQDIW 538
|
| >4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A* Length = 393 | Back alignment and structure |
|---|
Score = 560 bits (1445), Expect = 0.0
Identities = 134/406 (33%), Positives = 200/406 (49%), Gaps = 19/406 (4%)
Query: 311 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALS 370
+NV KEL P S RS HLE ++ +Y+ GDH+GV N V +
Sbjct: 3 MHGAFSTNVVASKELQQPGSARSTRHLEIELPKEA-SYQEGDHLGVIPRNYEGIVNRVTA 61
Query: 371 LLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAA 430
GL L ++E L L +Y +L ++ L A+AA
Sbjct: 62 RFGLDASQQIRLEAEEEKLAHLP-------LAKTVSVEELLQYVELQDPVTRTQLRAMAA 114
Query: 431 HASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQ 490
P L L K Y + ++A + ++LE++ ++P+ + F A + P ++
Sbjct: 115 KTVCPPHKVELEALLE---KQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALL-PSIR 170
Query: 491 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPI 549
PRYYSISSSPRV + +T ++V + +G +KG+ S ++ D I
Sbjct: 171 PRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQE----GDTITCFI 226
Query: 550 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKM 609
QS F LP D + P+IM+GPGTG+APFRGF+Q R L+E G LG + L+FGCR+
Sbjct: 227 STPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHE 286
Query: 610 DYIYEDELNNFVQSGALSQLIVAFSRE-GPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG 668
DY+Y++EL N G ++ L AFSR K YVQH M + + +L +GA+ Y+CG
Sbjct: 287 DYLYQEELENAQSEGIIT-LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICG 345
Query: 669 DAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
D MA V TL + + + A ++ L+ GRY +DVW
Sbjct: 346 DGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVW 391
|
| >1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 Length = 435 | Back alignment and structure |
|---|
Score = 561 bits (1449), Expect = 0.0
Identities = 143/447 (31%), Positives = 218/447 (48%), Gaps = 31/447 (6%)
Query: 281 SEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 340
+++R+ + A G + + + + R+ L +P S RS +
Sbjct: 5 NKFRLTYVAEAPDL--------TQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLH 56
Query: 341 IAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLSPD--TYFSLHTDKEDGTPLGK--- 394
G L Y+ GDH+GV+ N + V + L +P + +E T LG
Sbjct: 57 TNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISN 116
Query: 395 STLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYA 454
PPC++ A Y D+ + P L A+ A++ E RL L+ G EY
Sbjct: 117 WKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYE 174
Query: 455 QWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV 514
+W +++EV+ EFPS + P + + LQPRYYSISSSP + P +H+T A+V
Sbjct: 175 EWKWGKNPTMVEVLEEFPSIQMPATLLLT-QLSLLQPRYYSISSSPDMYPDEVHLTVAIV 233
Query: 515 YEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGP 571
T G VH G+CS+W+ P FVR + +F LP + +VP I++GP
Sbjct: 234 SYHTRDGEGPVHHGVCSSWLNRIQA------DDVVPCFVRGAPSFHLPRNPQVPCILVGP 287
Query: 572 GTGLAPFRGFLQER-FALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630
GTG+APFR F Q+R F +Q G P +L FGCR K+D+IY +E G +L
Sbjct: 288 GTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELY 347
Query: 631 VAFSRE-GPTKEYVQHKMMEKSSD-IWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQE 687
A+SRE K+YVQ + E+ ++ ++ L E G ++YVCGD MA DV + + I+ +
Sbjct: 348 TAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVT-MAADVLKAIQRIMTQ 406
Query: 688 QGSLDSSKAESMVKNLQMTGRYLRDVW 714
QG L A + L+ RY D++
Sbjct: 407 QGKLSEEDAGVFISRLRDDNRYHEDIF 433
|
| >1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* Length = 374 | Back alignment and structure |
|---|
Score = 529 bits (1366), Expect = 0.0
Identities = 116/409 (28%), Positives = 210/409 (51%), Gaps = 39/409 (9%)
Query: 307 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVE 366
+ Y P ++++V +++ +S++ H+E D+ +GL Y+ GD +GV+ +N V+
Sbjct: 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVK 63
Query: 367 EALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALL 426
E + LL L D ++ L AL + +L +
Sbjct: 64 ELVELLWLKGDEPVTVEGK-----------------TLPLNEALQWHFELTVNTAN---- 102
Query: 427 ALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIV 486
+ + + T ++ L L K + + A+ +++++ F A+ ++
Sbjct: 103 -IVENYATLTRSETLLPLVGD--KAKLQHY--AATTPIVDMV-RFSPAQLDAEALIN-LL 155
Query: 487 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 546
L PR YSI+SS + +HVT +V GR G S+++ + + E
Sbjct: 156 RPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEE-----GE 209
Query: 547 APIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCR 605
+F+ + NF+LPA+ + P+IMIGPGTG+APFR F+Q+R A G + LFFG
Sbjct: 210 VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQR----AADEAPGKNWLFFGNP 265
Query: 606 NRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLY 665
+ D++Y+ E +V+ G L+++ +A+SR+ K YVQ K+ E+ +++W +++GA++Y
Sbjct: 266 HFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIY 325
Query: 666 VCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
VCGDA MA+DV + L ++ E G +D+ A+ + L++ RY RDV+
Sbjct: 326 VCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 374
|
| >3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Length = 311 | Back alignment and structure |
|---|
Score = 319 bits (820), Expect = e-104
Identities = 67/283 (23%), Positives = 104/283 (36%), Gaps = 27/283 (9%)
Query: 447 PAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSR 506
IV + P G R YSI+S+
Sbjct: 41 GPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFD 100
Query: 507 IHVTCALV----YEKTPT---GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKL 558
V Y T G+CS ++ NS P +K + L
Sbjct: 101 GRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKI------QLTGPSGKIMLL 154
Query: 559 PA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-GPSLLFFGCRNRKMDYIYEDE 616
P D IMI GTG+APFRG+L+ F G + LF G N +Y++E
Sbjct: 155 PEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEE 213
Query: 617 LNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK 671
++++ + A SRE K YVQ K+ E S +I+ +L GA++Y CG K
Sbjct: 214 FTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-K 272
Query: 672 SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
M + TL + + +G + + L+ ++ +V+
Sbjct: 273 GMMPGIQDTLKKVAERRG----ESWDQKLAQLKKNKQWHVEVY 311
|
| >1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* Length = 314 | Back alignment and structure |
|---|
Score = 318 bits (816), Expect = e-103
Identities = 58/282 (20%), Positives = 108/282 (38%), Gaps = 26/282 (9%)
Query: 444 LASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV- 502
+ E + + + + E S + R YSI+SS
Sbjct: 48 ITGDDAPGETWHMVFSHEGEI--PYREGQSVGVIPD-GEDKNGKPHKLRLYSIASSALGD 104
Query: 503 --APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLP 559
+ + + G KG+CS ++ + P + + +P
Sbjct: 105 FGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEV------KLTGPVGKEMLMP 158
Query: 560 ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-GPSLLFFGCRNRKMDYIYEDELN 618
D IIM+G GTG+APFR FL + F + + G + LF G +Y++E
Sbjct: 159 KDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFE 217
Query: 619 NFVQSGALS-QLIVAFSREGPT----KEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKS 672
+ + +L A SRE K Y+Q +M + + ++W ML + Y+Y+CG K
Sbjct: 218 KMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCG-LKG 276
Query: 673 MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
M + + + ++ +G + L+ ++ +V+
Sbjct: 277 MEKGIDDIMVSLAAAEG----IDWIEYKRQLKKAEQWNVEVY 314
|
| >2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Length = 304 | Back alignment and structure |
|---|
Score = 316 bits (812), Expect = e-103
Identities = 62/289 (21%), Positives = 106/289 (36%), Gaps = 30/289 (10%)
Query: 442 RHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP- 500
L G L+ E S + R YSI+S+
Sbjct: 30 EPLVKEGGIGIVQHIKFDLTGGNLK-YIEGQSIGIIP-PGVDKNGKPEKLRLYSIASTRH 87
Query: 501 --RVAPSRIHVTCALV-YEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-SNF 556
V I + + Y+ +G G+CST++ + P + I
Sbjct: 88 GDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE------VKITGPVGKEM 141
Query: 557 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-----GPSLLFFGCRNRKMDY 611
LP D + +IM+ GTG+ P R +L F E A G S L FG +
Sbjct: 142 LLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NI 200
Query: 612 IYEDELNNFVQSGALS-QLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLY 665
+Y++EL Q + +L A SRE + Y+Q ++ E + +W ++ ++ + Y
Sbjct: 201 LYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTY 260
Query: 666 VCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
+CG M + L ++G K+L+ GR+ + +
Sbjct: 261 ICGPPP-MEEGIDAALSAAAAKEG----VTWSDYQKDLKKAGRWHVETY 304
|
| >2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* Length = 314 | Back alignment and structure |
|---|
Score = 316 bits (812), Expect = e-103
Identities = 54/258 (20%), Positives = 91/258 (35%), Gaps = 24/258 (9%)
Query: 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP---RVAPSRIHVTCALVYEKTPTGRVH 524
P + P R YSI+S + I G +
Sbjct: 70 GGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQ 129
Query: 525 -KGLCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLP-ADAKVPIIMIGPGTGLAPFRGF 581
KG+CS +M + P ++ + F LP D I+ + GTG+APF G
Sbjct: 130 FKGVCSNYMCDLKPGDEV------TMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGM 183
Query: 582 LQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP--- 638
+E + G L +G + + D L +LI A SRE
Sbjct: 184 SEELLEHKLIKFT-GNITLVYGAPYSD-ELVMMDYLKGLESKHKNFKLITAISREEKNSF 241
Query: 639 --TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 696
+ Y+ H++ E++ + +L+ G Y+CG K M + V + I G+
Sbjct: 242 DGGRMYISHRVREQAEAVKKILNGGGRFYICGGPKGMEKGVIEEIQKISGNTGT-----Y 296
Query: 697 ESMVKNLQMTGRYLRDVW 714
E +L+ + + +
Sbjct: 297 EEFKHHLEGAHQLFVETY 314
|
| >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402 | Back alignment and structure |
|---|
Score = 301 bits (771), Expect = 1e-95
Identities = 70/372 (18%), Positives = 127/372 (34%), Gaps = 31/372 (8%)
Query: 356 VYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP-PTFPPCSLRTALTKYA 414
V +++ ++ ++ LG + + + S P S +
Sbjct: 49 VPYARMNQEMQR-ITKLGGKIVSIRPAEDAAQIVSEGQSSAQASAQSPMASSTKIVHPKT 107
Query: 415 DLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSA 474
S P + L G L +
Sbjct: 108 TDTSVPVNIYRPKTPFLG---KCIENYE-LVDEGGSGTVRHVTFDISEGDLRYLEGQSIG 163
Query: 475 KPPLGVFFAAIVPRLQPRYYSISSSPR---VAPSRIHVTCALV-YEKTPTGRVHKGLCST 530
P + R YSI+S+ + + + Y+ +G G+CST
Sbjct: 164 IIP--PGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCST 221
Query: 531 WMKNSLPMEKSNDCSWAPIFV-RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ 589
++ N I LP D ++M+ GTG+APFR FL F Q
Sbjct: 222 YLCNLPV-----GTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQ 276
Query: 590 -EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS-QLIVAFSREGPT----KEYV 643
E G + L FG + +Y+D+ + +L A SRE T K YV
Sbjct: 277 HEDYKFKGKAWLIFGVPYTA-NILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYV 335
Query: 644 QHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 702
Q ++ E + +++ M+ + ++Y+CG K M + T +++G E M ++
Sbjct: 336 QSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRG----LNWEEMRRS 390
Query: 703 LQMTGRYLRDVW 714
++ R+ +V+
Sbjct: 391 MKKEHRWHVEVY 402
|
| >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 28/193 (14%), Positives = 45/193 (23%), Gaps = 30/193 (15%)
Query: 168 ATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQ 227
+T A R + + GG+ + V G + +
Sbjct: 6 STANSTGNQSYANRLFIYEVVGLGGD-GRNENSLVRKSGTTFITVPYARMNQEMQRITKL 64
Query: 228 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 287
G K + ED E + T + P T S
Sbjct: 65 GGKI-------VSIRPAEDAAQIVSEGQSSAQASAQSPMASSTKIVHPKTTDTSVP---- 113
Query: 288 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 347
+Y + P EL + H+ FDI+ L
Sbjct: 114 ------------------VNIYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLR 155
Query: 348 YETGDHVGVYCEN 360
Y G +G+
Sbjct: 156 YLEGQSIGIIPPG 168
|
| >3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316 | Back alignment and structure |
|---|
Score = 287 bits (736), Expect = 1e-91
Identities = 54/269 (20%), Positives = 96/269 (35%), Gaps = 37/269 (13%)
Query: 461 QRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT 520
Q + + + + + I + R YSISSS + + + +
Sbjct: 70 QINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSSNNMENLSVAIKIHKYEQTENA 129
Query: 521 -GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPAD---AKVPIIMIGPGTGLA 576
+ G CS ++KN + + F LP D I I GTG++
Sbjct: 130 PNITNYGYCSGFIKNLKINDD------IYLTGAHGYFNLPNDAIQKNTNFIFIATGTGIS 183
Query: 577 PFRGFLQERFA------LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS-QL 629
P+ FL++ FA G +++G N +Y +EL F + + +
Sbjct: 184 PYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLNELEYFQKMYPNNINI 242
Query: 630 IVAFSRE---GPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIV 685
FS + T YVQ ++ ++ ++ N+ + LY+CG KS+ V L
Sbjct: 243 HYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDIL---- 297
Query: 686 QEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
+ D K R +V+
Sbjct: 298 KSHDQFDEKKK----------KRVHVEVY 316
|
| >1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 Length = 191 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 3e-62
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 17/189 (8%)
Query: 94 KEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY 153
K + + + + +G+ GTAEG A+ LAD A ++ +V +D +A
Sbjct: 11 KVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAP--QVATLDSHAGN---- 64
Query: 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEH- 212
L +E V A+Y +G P DNA +F W + ++ ++Y VFG G++ +
Sbjct: 65 ---LPREGAVLIVTASY-NGHPPDNAKQFVDWLDQASAD-EVKGVRYSVFGCGDKNWATT 119
Query: 213 FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL-----RDDD 267
+ K+ +DE LA +GA+ + G D E + WRE +W ++ +D
Sbjct: 120 YQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSED 179
Query: 268 DPTTVSTPY 276
+ +T+S +
Sbjct: 180 NKSTLSLQF 188
|
| >3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, alternative splicing, calcium, calmodulin-binding, FAD, FMN, heme, iron, metal-binding; HET: FMN; 2.50A {Homo sapiens} Length = 219 | Back alignment and structure |
|---|
Score = 206 bits (525), Expect = 3e-62
Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 21/222 (9%)
Query: 75 RRSSSSKPKKVEPLKPLVV-----KEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEA 129
++ PLK LV + + +VTI F T+TG +E A L
Sbjct: 6 HDEKRRPKRREIPLKVLVKAVLFACMLMRKTMASRVRVTILFATETGKSEALAWDLGALF 65
Query: 130 RARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK 189
++ KVV +D Y L++E ++ +T+G+G+ N + K
Sbjct: 66 SCAFNP---KVVCMDKYR------LSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFML 116
Query: 190 EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFS 249
+ E K +Y VFGLG+ Y F A +D+ L++ GA +L P+G GD+ ED F
Sbjct: 117 K--ELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELSGQEDAFR 174
Query: 250 AWRELVWPEL-DNLLRDDDDPTTVSTPYTAAIS----EYRVV 286
+W + + + YT+ ++ YR+V
Sbjct: 175 SWAVQTFKAACETFDVRGKQHIQIPKLYTSNVTWDPHHYRLV 216
|
| >1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 Length = 167 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 5e-57
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 11/175 (6%)
Query: 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK 158
+TI +QTG A A+AL D+ A K+V+ DY ++ +
Sbjct: 4 APAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNV--KLVNAGDYKFKQ------IA 55
Query: 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAK 218
E ++ +T G+GEP + A +K+ K L+ + VF LG+ YE F + K
Sbjct: 56 SEKLLIVVTSTQGEGEPPEEAVALHKFLFSK-KAPKLENTAFAVFSLGDTSYEFFCQSGK 114
Query: 219 VVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVS 273
D LA G +RL+ D + + S WR V L + +V+
Sbjct: 115 DFDSKLAELGGERLLDRVDADVE--YQAAASEWRARVVDALKSRAPVAAPSQSVA 167
|
| >2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A Length = 147 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 1e-47
Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
+T+ G+ G AE A+ LA++ F + E+ L I
Sbjct: 3 DITLISGSTLGGAEYVAEHLAEKLEEAG----FTTETLHGPLLED------LPASGIWLV 52
Query: 166 FLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILA 225
+T+G G+ DN + FY+ E++ L +++G G+G+R+Y+ F ++ L
Sbjct: 53 ISSTHGAGDIPDNLSPFYEALQEQKP--DLSAVRFGAIGIGSREYDTFCGAIDKLEAELK 110
Query: 226 NQGAKRLVPVGLGD--DDQCIEDDFSAWRELVWPEL 259
N GAK+ + D ED W L
Sbjct: 111 NSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146
|
| >1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... Length = 147 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 5e-33
Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K I +G+ TG E A+ +A E + D E + ++V
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAGYEV--DSRDAASV-----EAGGLFEGFDLVLL 54
Query: 166 FLATYGDG--EPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 223
+T+GD E D+ + E Q K FG G+ +E+F ++E
Sbjct: 55 GCSTWGDDSIELQDDFIPLFDSLEE----TGAQGRKVACFGCGDSSWEYFCGAVDAIEEK 110
Query: 224 LANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 259
L N GA+ + D D + DD W V +
Sbjct: 111 LKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 147
|
| >2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1 Length = 173 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-26
Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 37/181 (20%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ IFF T TG A + A+ D +D+DD D + LK +++F
Sbjct: 1 KIGIFFSTSTGNTTEVADFIGKTLGAKAD----APIDVDDVTDPQA-----LKDYDLLFL 51
Query: 166 FLATYGDGEPTDNAARFYKWFTEKE-GGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDE 222
T+ G T+ + + F + ++ L +FGLG+ + ++F + + +
Sbjct: 52 GAPTWNTGADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHD 111
Query: 223 ILANQGAKRLVP-------------------VGLGDDDQCIEDDFS-----AWRELVWPE 258
A QGAK + +GL D + W E V E
Sbjct: 112 CFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMVN-DQIPMEKRVAGWVEAVVSE 170
Query: 259 L 259
Sbjct: 171 T 171
|
| >3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* Length = 148 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 5e-25
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 14/157 (8%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
KV I FG+ TG E A+ L + A + +++ D E + V F
Sbjct: 3 KVLIVFGSSTGNTESIAQKLEELIAAGGHEV--TLLNAADA-----SAENLADGYDAVLF 55
Query: 166 FLATY--GDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 223
+ + D E D+ ++ F L K F G+++YEHF ++E
Sbjct: 56 GCSAWGMEDLEMQDDFLSLFEEFDRIG----LAGRKVAAFASGDQEYEHFCGAVPAIEER 111
Query: 224 LANQGAKRLVPVGLGD-DDQCIEDDFSAWRELVWPEL 259
GA + + D + +++ E V +L
Sbjct: 112 AKELGATIIAEGLKMEGDASNDPEAVASFAEDVLKQL 148
|
| >2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus} Length = 182 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 1e-23
Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 38/187 (20%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ +FFG+ TGT AK + D K ++++ + + +
Sbjct: 3 KIGLFFGSDTGTTRKIAKQIKDMFDDEVMA---KPLNVNRADVAD------FMAYDFLIL 53
Query: 166 FLATYGDGEPTDNAARFYKW----FTEKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKV 219
T GDG+ +A F + + +FGLG++ F
Sbjct: 54 GTPTLGDGQLPGLSANAASESWEEFLPRIADQDFSGKTIALFGLGDQVTYPLEFVNALFF 113
Query: 220 VDEILANQGAKRLVP-------------------VGLGDDDQC----IEDDFSAWRELVW 256
+ E +++GA + +GL D + W L+
Sbjct: 114 LHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGLALDQDNQAALTPERLKGWLSLIA 173
Query: 257 PELDNLL 263
+ +L
Sbjct: 174 ADFGLVL 180
|
| >1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 Length = 179 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 5e-20
Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 40/184 (21%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ +FFG+ TG AK++ D+ + ++++ + E+ + +
Sbjct: 2 KIGLFFGSNTGKTRKVAKSIKKRFD---DETMSDALNVNRVSAED------FAQYQFLIL 52
Query: 166 FLATYGDGEPTDNAARFYKW----FTEKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKV 219
T G+GE ++ F K G +FGLG++ E++
Sbjct: 53 GTPTLGEGELPGLSSDAENESWEEFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGE 112
Query: 220 VDEILANQGAKRLVP-------------------VGLGDDDQCIEDDFS-----AWRELV 255
+ ++GAK + VGL D + + AW +
Sbjct: 113 LYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLDN-QSGKTDERVAAWLAQI 171
Query: 256 WPEL 259
PE
Sbjct: 172 APEF 175
|
| >1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A* Length = 175 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 3e-19
Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 42/186 (22%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
IFFG+ TG E AK + + V D+ D A +E L+ +I+
Sbjct: 2 ITGIFFGSDTGNTENIAKMIQKQLGK-------DVADVHDIAKSS---KEDLEAYDILLL 51
Query: 166 FLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEI 223
+ T+ GE + F+ E + +FG G+++ E+F + +I
Sbjct: 52 GIPTWYYGEAQCDWDDFFPTLEEID----FNGKLVALFGCGDQEDYAEYFCDALGTIRDI 107
Query: 224 LANQGAKRLVP--------------------VGLGDDDQC----IEDDFSAWRELVWPE- 258
+ +GA + VGL D+ + W + + E
Sbjct: 108 IEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEEL 167
Query: 259 -LDNLL 263
LD +L
Sbjct: 168 HLDEIL 173
|
| >1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A* Length = 169 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 1e-17
Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 15/138 (10%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ +F+GTQTG + A+++ E ++I + DI + + L + +
Sbjct: 2 KIGLFYGTQTGVTQTIAESIQQEFG---GESIVDLNDIANADASD------LNAYDYLII 52
Query: 166 FLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEI 223
T+ GE + Y Q K FG G++ ++F +++E
Sbjct: 53 GCPTWNVGELQSDWEGIYDDLDSVN----FQGKKVAYFGAGDQVGYSDNFQDAMGILEEK 108
Query: 224 LANQGAKRLVPVGLGDDD 241
+++ G++ + + D
Sbjct: 109 ISSLGSQTVGYWPIEGYD 126
|
| >2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A* Length = 164 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 4e-16
Identities = 32/177 (18%), Positives = 52/177 (29%), Gaps = 39/177 (22%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ IFFGT +G AE A+ ++ +VVD+ + E+ V
Sbjct: 3 KIGIFFGTDSGNAEAIAEKISKAIGN------AEVVDVAKASKEQ------FNSFTKVIL 50
Query: 166 FLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILA 225
T G G+ + F G+ GLG++ +
Sbjct: 51 VAPTAGAGDLQTDWEDFLGTLEA----SDFANKTIGLVGLGDQDTYSETFAEGIFHIYEK 106
Query: 226 NQGAKRLVP-------------------VGLGDDDQ----CIEDDFSAWRELVWPEL 259
+ K + VGL D+ ++ S W E V
Sbjct: 107 AKAGKVVGQTSTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSF 163
|
| >1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A* Length = 169 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 4e-16
Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 41/181 (22%)
Query: 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVF 164
+K+ +F+GTQTG E A+ + DE + + D+ + L +
Sbjct: 2 KKIGLFYGTQTGKTESVAEIIRDEF----GNDVVTLHDVSQAEVTD------LNDYQYLI 51
Query: 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDE 222
T GE + Y + + FG G++ ++F +++E
Sbjct: 52 IGCPTLNIGELQSDWEGLYSELDDVD----FNGKLVAYFGTGDQIGYADNFQDAIGILEE 107
Query: 223 ILANQGAKRLVP-------------------VGLGDDDQCIEDDFS-----AWRELVWPE 258
++ +G K + VGL D+ + D + +W + E
Sbjct: 108 KISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDN-QSDLTDDRIKSWVAQLKSE 166
Query: 259 L 259
Sbjct: 167 F 167
|
| >1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 6e-12
Identities = 43/276 (15%), Positives = 81/276 (29%), Gaps = 41/276 (14%)
Query: 424 ALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEF----------PS 473
A LA + + + G + + + ++ +++ F
Sbjct: 123 AYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAKTPRSALITSFELEPVDGGAVAE 182
Query: 474 AKP----PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCS 529
+P + + + + R YS++ P RI V K R G S
Sbjct: 183 YRPGQYLGVWLKPEGFPHQ-EIRQYSLTRKPDGKGYRIAV-------K----REEGGQVS 230
Query: 530 TWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ 589
W+ N + AP +F + P+ +I G G P L L
Sbjct: 231 NWLHNHANVGDVVKLV-AP----AGDFFMAVADDTPVTLISAGVGQTPMLAMLD---TLA 282
Query: 590 EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR----EGPTKEYVQH 645
+AG F N + + DE+ QS + + + ++
Sbjct: 283 KAGHT-AQVNWFHAAENGD-VHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSE 340
Query: 646 KMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 681
+M+ S Y+CG + + L
Sbjct: 341 GLMDLSKLEGAFSDPTMQFYLCG-PVGFMQFTAKQL 375
|
| >1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 59/300 (19%), Positives = 106/300 (35%), Gaps = 42/300 (14%)
Query: 405 SLRTALTKYADLLSSPK-----KSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVA 459
L A+ + ++ A LA R P G + +++
Sbjct: 101 HLLAAIKEVLGNAATDDIISAWAQAYGNLADVLMGMESELYERSAEQPGGWKGWRTFVIR 160
Query: 460 SQRSLLEVMSEF----------PSAKP----PLGVFFAAIVPRLQPRYYSISSSPRVAPS 505
+R +V++ F + +P + + A+ + Q R YS+S P
Sbjct: 161 EKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQ-QIRQYSLSDMPNGRTY 219
Query: 506 RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVP 565
RI V ++ G G S + + + + + AP +F + DAK P
Sbjct: 220 RISV------KREGGGPQPPGYVSNLLHDHVNVGDQVKLA-AP----YGSFHIDVDAKTP 268
Query: 566 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 625
I++I G GL P L + ALQ ++ + G RN + D L ++
Sbjct: 269 IVLISGGVGLTPMVSML--KVALQAPPRQV---VFVHGARNSA-VHAMRDRLREAAKTYE 322
Query: 626 LSQLIVAFSREGPT----KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 681
L V + + P ++Y +++ ++L A Y+CG R H L
Sbjct: 323 NLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICG-PIPFMRMQHDAL 381
|
| >1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 34/186 (18%)
Query: 490 QPRYYSISSSPRVAPS-RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 548
R YS ++ P + + +G S +++N +
Sbjct: 59 VSRSYSPANLPNPEGRLEFLI-----------RVLPEGRFSDYLRNDA---RVGQ----V 100
Query: 549 IFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 606
+ V+ F L P + GTGLAP +++ +QE A + ++FG
Sbjct: 101 LSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQ---MQEWTAP-NETRIYFGVNT 156
Query: 607 RKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKE----YVQHKMMEKSSDIWNMLSEGA 662
+ Y DEL + +S + E + E D+ + +
Sbjct: 157 EP-ELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALRE---DLESSDANPD 212
Query: 663 YLYVCG 668
Y+CG
Sbjct: 213 I-YLCG 217
|
| >1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 35/197 (17%)
Query: 490 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 549
+ R YS SS P + V V +G S ++ K+ D +
Sbjct: 154 ETRSYSFSSQPGNRLTGFVVR-----------NVPQGKMSEYLSVQA---KAGD----KM 195
Query: 550 FVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 607
+F L D K P++M+ GTG+APF LQ L++ G+E P L FG
Sbjct: 196 SFTGPFGSFYLR-DVKRPVLMLAGGTGIAPFLSMLQ---VLEQKGSE-HPVRLVFGVTQD 250
Query: 608 KMDYIYEDELNNFVQSGALSQLIVAFSREGPT---KEYVQHKMMEKSSDIWNMLSEGAYL 664
D + ++L+ Q + + K YV + + +
Sbjct: 251 C-DLVALEQLDALQQKLPWFEYRTVVAHAESQHERKGYVTGHIEYDWLNG-----GEVDV 304
Query: 665 YVCGDAKSMARDVHRTL 681
Y+CG M V L
Sbjct: 305 YLCG-PVPMVEAVRSWL 320
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 1e-09
Identities = 101/663 (15%), Positives = 197/663 (29%), Gaps = 204/663 (30%)
Query: 83 KKVEPLKPLVVKEPEVE----VDDGKQKVTIFFGT-QTGTAEGFAKALADEARARYD--K 135
K V+ + ++ + E++ D F T + E K + + R Y
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 136 AIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGE--PTDNAARFYKWFTEKEGGE 193
+ K + Y E+ + Y D + N +R + ++
Sbjct: 96 SPIKTEQRQP-SMMTRMYIEQRDR---------LYNDNQVFAKYNVSRLQPYLKLRQ--- 142
Query: 194 WLQKLK-------YGVFGLGNRQYEHFNKIAK--VVDEILANQGAKRLVP-----VGLGD 239
L +L+ GV G G K V ++ + + + + L +
Sbjct: 143 ALLELRPAKNVLIDGVLGSG-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 240 DDQCIEDDFSAWRELVWPELD-NLLRDDDDPTTVSTPYTAAISEYRVVF----YDNA--- 291
+ E ++L ++D N D + + + +E R + Y+N
Sbjct: 192 CN-SPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 292 --DASVGEKSWGNANGHAVYDAQH------PCRSNVAVRKELHTPSSDRSCTHLEFDIAG 343
+ V +A+ C+ L T + + T D
Sbjct: 250 LLN---------------VQNAKAWNAFNLSCKI-------LLT-TRFKQVT----DFLS 282
Query: 344 TGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPP 403
T H+ + +++ T +E SLL L +D LP
Sbjct: 283 AATTT----HISLDHHSMTLTPDEVKSLLLK------YLDCRPQD--------LP----- 319
Query: 404 CSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVAS--- 460
R LT ++P++ +++A + D +H+ D+ I +S
Sbjct: 320 ---REVLT------TNPRRLSIIA-ESIRDGLATWDNWKHV----NCDKLTTIIESSLNV 365
Query: 461 -----QRSLLEVMSEFP-SAKPP---LGVFFAA--------IVPRLQPRYYSISSSPRVA 503
R + + +S FP SA P L + + +V +L +Y + P+ +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPKES 424
Query: 504 PSRIHVTCALVYEKTPTGR--VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN------ 555
I + L + +H+ + + S I
Sbjct: 425 TISIP-SIYLELKVKLENEYALHRSIVDHYNI------PKTFDSDDLIPPYLDQYFYSHI 477
Query: 556 -FKLPADAKVPIIMIGPGTGLAPFRG-FLQERFALQ----------EAGAELGPSLLFFG 603
L I + FR FL RF L+ A + +L
Sbjct: 478 GHHLKN--------IEHPERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQL- 527
Query: 604 CRNRKMDYI------YE---DELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDI 654
+ K YI YE + + +F+ LI + ++ +M + I
Sbjct: 528 -KFYK-PYICDNDPKYERLVNAILDFLPKIE-ENLI-----CSKYTDLLRIALMAEDEAI 579
Query: 655 WNM 657
+
Sbjct: 580 FEE 582
|
| >1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 33/221 (14%), Positives = 63/221 (28%), Gaps = 44/221 (19%)
Query: 475 KPPLGVFFAA------IVPRLQPRYYSISSSPRVAPSRI--HVTCALVYEKTPTGRVHKG 526
P F A ++ R +S++S+P I H+ G
Sbjct: 23 VPDAAFSFRAGQYLMVVMDERDKRPFSMASTPD-EKGFIELHI-----------GASEIN 70
Query: 527 LCSTWMKNSLPMEKSNDCSWAPIFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQE 584
L + + + + + I V L D + P+I+I GTG + R L
Sbjct: 71 LYAKAVMDRI---LKDH----QIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLT 123
Query: 585 RFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKE--- 641
+++G R + EL Q++ +
Sbjct: 124 ---ALARNPN-RDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRT 178
Query: 642 -YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 681
V +++ + +Y+ G MA+
Sbjct: 179 GTVLTAVLQDHGTL-----AEHDIYIAG-RFEMAKIARDLF 213
|
| >2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 28/206 (13%)
Query: 490 QPRYYSISSSPRVAPS-RIHVTCALVYEKTPTG----RVHKGLCSTWMKNSLPMEKSNDC 544
R YS+++ P ++V A + G+ S+++ + P +K
Sbjct: 85 TVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDK---- 140
Query: 545 SWAPIFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFF 602
+ + +F + D ++ IG G G+AP R + F + G ++
Sbjct: 141 ----VMMSGPYGDFHIQ-DTDAEMLYIGGGAGMAPLRAQILHLFRTLKTG---RKVSYWY 192
Query: 603 GCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT------KEYVQHKMMEKSSDIWN 656
G R++ + YE++ + + +A S P ++ + + +
Sbjct: 193 GARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVIYDNYLKDHD 251
Query: 657 MLSEGAYLYVCGDAKSMARDVHRTLH 682
+ Y Y+CG MA V L
Sbjct: 252 APEDIEY-YMCG-PGPMANAVKGMLE 275
|
| >2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 Length = 137 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-05
Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 19/143 (13%)
Query: 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFF 166
V I + + TG E A + +A D++ E+ ++ + ++++
Sbjct: 2 VEIVYWSGTGNTEAMANEIEAAVKA-------AGADVESVRFEDTNVDD-VASKDVILLG 53
Query: 167 LATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILAN 226
G E D+ + FT+ L+ K G+FG + + +
Sbjct: 54 CPAMGSEELEDSVVEPF--FTDLAPK--LKGKKVGLFGSYGWGSGEWMDA---WKQRTED 106
Query: 227 QGAKRLVP---VGLGDD-DQCIE 245
GA + + D+ +C E
Sbjct: 107 TGATVIGTAIVNEMPDNAPECKE 129
|
| >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 20/131 (15%)
Query: 492 RYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551
R YSI+S +V G ++ +++ +++ ++ +
Sbjct: 50 RAYSIASPNYEEHLEFFSI-----------KVPDGPLTSRLQH---LKEGDELMVSRKPT 95
Query: 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 611
K + ++ GTG+APF +Q+ + +L G R +
Sbjct: 96 GTLVHDDLLPGK-HLYLLSTGTGMAPFLSVIQDPETYERY----EKVILVHGVRWVS-EL 149
Query: 612 IYEDELNNFVQ 622
Y D + +
Sbjct: 150 AYADFITKVLP 160
|
| >2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 37/207 (17%), Positives = 66/207 (31%), Gaps = 34/207 (16%)
Query: 488 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 547
+ R YSI+S + +V G ++ +++ ++
Sbjct: 60 KPIMRAYSIASPAWDEELEFYSI-----------KVPDGPLTSRLQH---IKVGEQIILR 105
Query: 548 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 607
P V K + + GTG+APF ++E EA + ++ CR
Sbjct: 106 PKPVGTLVIDALLPGK-RLWFLATGTGIAPFASLMREP----EAYEKFDEVIMMHACRTV 160
Query: 608 KMDYIYEDELNNFVQSGALSQLIVA-------------FSREGPTKEYVQHKMMEKSSDI 654
+ Y +L +Q L +V F G + + + + I
Sbjct: 161 A-ELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGI 219
Query: 655 WNMLSEGAYLYVCGDAKSMARDVHRTL 681
M E VCG + DV + L
Sbjct: 220 APMNPETDRAMVCGSL-AFNVDVMKVL 245
|
| >4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 34/203 (16%)
Query: 492 RYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551
R YSI S +V G ++ +++ ++ +
Sbjct: 66 RAYSIVSPNYEEHLEFFSI-----------KVQNGPLTSRLQH---LKVGDPVLIGKKPT 111
Query: 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 611
K + M+ GTGLAPF +++ + +L CR + +
Sbjct: 112 GTLVADNLLPGK-TLWMLSTGTGLAPFMSIIRD----PDIYERFDKVVLTHTCRLKG-EL 165
Query: 612 IYEDELNNFVQSGALSQLIVAF--------SRE-----GPTKEYVQHKMMEKSSDIWNML 658
Y D + + + ++ +RE G + + + D+
Sbjct: 166 AYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEFENEGRITDLIASGKLFTDLDMPPFS 225
Query: 659 SEGAYLYVCGDAKSMARDVHRTL 681
E + +CG +M +D L
Sbjct: 226 PEQDRVMLCGST-AMLKDTTELL 247
|
| >2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 28/219 (12%)
Query: 470 EFPSAKPPLGV-------FFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR 522
PS LG+ A I +L R Y+ +S + VY K +
Sbjct: 33 SLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVD-EIGHFDLLVK-VYFKNEHPK 90
Query: 523 VHKGLCSTWMKNSLP---MEKSNDCSWAPIFVRQSNFKLPADAKVP--IIMIGPGTGLAP 577
G T +SLP + + +F + + + MI G+G+ P
Sbjct: 91 FPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITP 150
Query: 578 FRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ--SGALSQLIVAFSR 635
+ + L++ + L + R D + DEL+ + L V
Sbjct: 151 MYQII--QAVLRDQPEDHTEMHLVYANRTED-DILLRDELDRWAAEYPDRLKVWYVIDQV 207
Query: 636 EGPTKE------YVQHKMMEKSSDIWNMLSEGAYLYVCG 668
+ P + +V ++ + + CG
Sbjct: 208 KRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACG 243
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 714 | |||
| 3qe2_A | 618 | CPR, P450R, NADPH--cytochrome P450 reductase; cypo | 100.0 | |
| 2bpo_A | 682 | CPR, P450R, NADPH-cytochrom P450 reductase; NADPH- | 100.0 | |
| 1tll_A | 688 | Nitric-oxide synthase, brain; reductase module, FM | 100.0 | |
| 3qfs_A | 458 | CPR, P450R, NADPH--cytochrome P450 reductase; flav | 100.0 | |
| 2qtl_A | 539 | MSR;, methionine synthase reductase; alpha-beta-al | 100.0 | |
| 4dql_A | 393 | Bifunctional P-450/NADPH-P450 reductase; rossmann | 100.0 | |
| 1f20_A | 435 | Nitric-oxide synthase; nitric-xoide synthase, redu | 100.0 | |
| 1ddg_A | 374 | Sulfite reductase (NADPH) flavoprotein alpha- comp | 100.0 | |
| 1fnb_A | 314 | Ferredoxin-NADP+ reductase; oxidoreductase (NADP+( | 100.0 | |
| 2bmw_A | 304 | Ferredoxin--NADP reductase; oxidoreductase, flavop | 100.0 | |
| 3vo2_A | 310 | Putative uncharacterized protein; rossmann fold, o | 100.0 | |
| 2b5o_A | 402 | FNR, ferredoxin--NADP reductase; complex with FAD, | 100.0 | |
| 2rc5_A | 314 | Ferredoxin-NADP reductase; FAD, oxidoreductase; HE | 100.0 | |
| 3lo8_A | 311 | Ferredoxin--NADP reductase; electron transport, ox | 100.0 | |
| 3hr4_A | 219 | Nitric oxide synthase, inducible; inducible nitric | 100.0 | |
| 3jqq_A | 316 | Ferredoxin NADP reductase; FAD, oxidoreductase; HE | 100.0 | |
| 1bvy_F | 191 | Protein (cytochrome P450 BM-3); fatty acid monooxy | 99.95 | |
| 1ykg_A | 167 | SIR-FP, sulfite reductase [NADPH] flavoprotein alp | 99.93 | |
| 1tvc_A | 250 | Methane monooxygenase component C, methane monooxy | 99.92 | |
| 2hna_A | 147 | Protein MIOC, flavodoxin; alpha-beta sandwich, fla | 99.92 | |
| 2r6h_A | 290 | NADH:ubiquinone oxidoreductase, Na translocating, | 99.91 | |
| 2eix_A | 243 | NADH-cytochrome B5 reductase; flavoprotein, FAD-bi | 99.91 | |
| 1qfj_A | 232 | Protein (flavin reductase); riboflavin, ferredoxin | 99.91 | |
| 1fdr_A | 248 | Flavodoxin reductase; ferredoxin reductase, flavin | 99.91 | |
| 1umk_A | 275 | B5R, NADH-cytochrome B5 reductase; flavoprotein, b | 99.91 | |
| 4eh1_A | 243 | Flavohemoprotein; structural genomics, niaid, nati | 99.9 | |
| 1krh_A | 338 | Benzoate 1,2-dioxygenase reductase; alpha-beta, FA | 99.9 | |
| 3f6r_A | 148 | Flavodoxin; FMN binding, oxidized, electron transp | 99.9 | |
| 1gvh_A | 396 | Flavohemoprotein; oxidoreductase, NADP, heme, flav | 99.9 | |
| 4fk8_A | 271 | Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st | 99.9 | |
| 2bgi_A | 272 | Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi | 99.89 | |
| 4g1v_A | 399 | Flavohemoglobin; three domains: globin fold, antip | 99.89 | |
| 2cnd_A | 270 | NADH-dependent nitrate reductase; nitrate assimila | 99.89 | |
| 2qdx_A | 257 | Ferredoxin reductase; oxidoreductase; HET: FAD; 1. | 99.89 | |
| 1cqx_A | 403 | Flavohemoprotein; globin fold, six-stranded antipa | 99.89 | |
| 1ep3_B | 262 | Dihydroorotate dehydrogenase B (PYRK subunit); het | 99.88 | |
| 1f4p_A | 147 | Flavodoxin; electron transport, flavoprotein, FMN, | 99.86 | |
| 2pia_A | 321 | Phthalate dioxygenase reductase; HET: FMN; 2.00A { | 99.86 | |
| 2wc1_A | 182 | Flavodoxin; electron transport, flavoprotein; HET: | 99.85 | |
| 1yob_A | 179 | Flavodoxin 2, flavodoxin II; alpha-beta fold, non- | 99.84 | |
| 2fcr_A | 173 | Flavodoxin; electron transport; HET: FMN; 1.80A {C | 99.84 | |
| 1ag9_A | 175 | Flavodoxin; electron transport, reductive activati | 99.83 | |
| 2bmv_A | 164 | Flavodoxin; electron transport, flavoprotein, FMN, | 99.82 | |
| 1obo_A | 169 | Flavodoxin; electron transfer, flavoprotein, elect | 99.82 | |
| 1czn_A | 169 | Flavodoxin; FMN binding, redox potential, electron | 99.81 | |
| 5nul_A | 138 | Flavodoxin; electron transport, flavoprotein, FMN; | 99.75 | |
| 2gpj_A | 252 | Siderophore-interacting protein; structural genomi | 99.69 | |
| 3hly_A | 161 | Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein | 99.68 | |
| 2xod_A | 119 | NRDI protein, NRDI; flavoprotein, redox protein, r | 99.67 | |
| 3fni_A | 159 | Putative diflavin flavoprotein A 3; alpha-beta pro | 99.67 | |
| 3a1f_A | 186 | Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi | 99.64 | |
| 2fz5_A | 137 | Flavodoxin; alpha/beta doubly-wound topology, non- | 99.63 | |
| 1rlj_A | 139 | NRDI protein; flavoprotein, FMN, thioredoxin, alph | 99.61 | |
| 3lyu_A | 142 | Putative hydrogenase; the C-terminal has AN alpha- | 99.6 | |
| 3lrx_A | 158 | Putative hydrogenase; alpha-beta protein, structur | 99.6 | |
| 4dik_A | 410 | Flavoprotein; TM0755, electron transport, DI-iron | 99.4 | |
| 1e5d_A | 402 | Rubredoxin\:oxygen oxidoreductase; oxygenreductase | 99.36 | |
| 2a5l_A | 200 | Trp repressor binding protein WRBA; APC5760, PA094 | 99.36 | |
| 1ycg_A | 398 | Nitric oxide reductase; DIIRON site, oxidoreductas | 99.36 | |
| 2ark_A | 188 | Flavodoxin; FMN, structural genomics, PSI, structu | 99.34 | |
| 3n3a_C | 153 | Protein NRDI; ribonucleotide reductase, four-helix | 99.32 | |
| 2q9u_A | 414 | A-type flavoprotein; flavodoxin like, beta lactama | 99.25 | |
| 3b6i_A | 198 | Flavoprotein WRBA; flavoproteins, NADH:quinone oxi | 99.24 | |
| 3klb_A | 162 | Putative flavoprotein; structural genomi center fo | 99.21 | |
| 2zki_A | 199 | 199AA long hypothetical Trp repressor binding prot | 99.2 | |
| 2ohh_A | 404 | Type A flavoprotein FPRA; beta-lactamase like doma | 99.2 | |
| 1ydg_A | 211 | Trp repressor binding protein WRBA; tetramer, stru | 99.18 | |
| 3d7n_A | 193 | Flavodoxin, WRBA-like protein; structural genomics | 99.17 | |
| 4ici_A | 171 | Putative flavoprotein; PF12682 family protein, fla | 99.15 | |
| 2vzf_A | 197 | NADH-dependent FMN reductase; oxidoreductase; 2.50 | 99.11 | |
| 1t5b_A | 201 | Acyl carrier protein phosphodiesterase; structural | 99.02 | |
| 3edo_A | 151 | Flavoprotein, putative Trp repressor binding prote | 98.89 | |
| 1sqs_A | 242 | Conserved hypothetical protein; structural genomic | 98.81 | |
| 1t0i_A | 191 | YLR011WP; FMN binding protein, flavodoxin, azoredu | 98.76 | |
| 1rtt_A | 193 | Conserved hypothetical protein; protein structure | 98.76 | |
| 3gfs_A | 174 | FMN-dependent NADPH-azoreductase; flavoproteins, q | 98.75 | |
| 2hpv_A | 208 | FMN-dependent NADH-azoreductase; structural genomi | 98.65 | |
| 2q62_A | 247 | ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobi | 98.55 | |
| 1rli_A | 184 | Trp repressor binding protein; structural genomics | 98.44 | |
| 3fvw_A | 192 | Putative NAD(P)H-dependent FMN reductase; Q8DWD8_s | 98.43 | |
| 2fzv_A | 279 | Putative arsenical resistance protein; flavin bind | 98.41 | |
| 3k1y_A | 191 | Oxidoreductase; structural genomics, PSI-2, protei | 98.38 | |
| 3r6w_A | 212 | FMN-dependent NADH-azoreductase 1; nitrofurazone, | 98.36 | |
| 3rpe_A | 218 | MDAB, modulator of drug activity B; structural gen | 98.31 | |
| 4hs4_A | 199 | Chromate reductase; triple-layered, A/B/A structur | 98.26 | |
| 3lcm_A | 196 | SMU.1420, putative oxidoreductase; NADPH:quinone o | 98.24 | |
| 3f2v_A | 192 | General stress protein 14; alpha-beta protein., st | 98.2 | |
| 3s2y_A | 199 | Chromate reductase; uranium reductase, oxidoreduct | 97.47 | |
| 2amj_A | 204 | Modulator of drug activity B; oxidoreductase, mena | 98.15 | |
| 1d4a_A | 273 | DT-diaphorase, quinone reductase; flavoprotein, ro | 98.14 | |
| 3p0r_A | 211 | Azoreductase; structural genomics, center for stru | 98.14 | |
| 3tem_A | 228 | Ribosyldihydronicotinamide dehydrogenase [quinone; | 98.07 | |
| 3u7r_A | 190 | NADPH-dependent FMN reductase; alpha/beta twisted | 97.99 | |
| 3u7i_A | 223 | FMN-dependent NADH-azoreductase 1; structural geno | 97.88 | |
| 3ha2_A | 177 | NADPH-quinone reductase; structural genomics, PSI- | 97.85 | |
| 3svl_A | 193 | Protein YIEF; E. coli CHRR enzyme, chromate biorem | 97.84 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.56 | |
| 4gi5_A | 280 | Quinone reductase; protein structure initiative, F | 97.16 |
| >3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-114 Score=1002.77 Aligned_cols=592 Identities=41% Similarity=0.750 Sum_probs=516.3
Q ss_pred ccCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhc--CCCeEEEEEeCCCCCCCCch
Q 005109 101 DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK--KENIVFFFLATYGDGEPTDN 178 (714)
Q Consensus 101 ~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~--~~~~vif~~sTyG~G~~pdn 178 (714)
...+++|+|+|||||||||.+|++|++++.+.| ..++++|+++++.++ ...+. +++.+||++||||+|++|+|
T Consensus 15 ~~~~~~i~I~YgS~tGnte~~A~~la~~l~~~g--~~~~v~~~~~~~~~~---l~~~~~~~~~~vi~~~sT~G~G~~pd~ 89 (618)
T 3qe2_A 15 KKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYG--MRGMSADPEEYDLAD---LSSLPEIDNALVVFCMATYGEGDPTDN 89 (618)
T ss_dssp HHHTCSEEEEEECSSSHHHHHHHHHHHHGGGGT--CCEEEECGGGSCGGG---GGGGGGSTTCEEEEEEECBGGGBCCGG
T ss_pred HhcCCeEEEEEECChhHHHHHHHHHHHHHHhCC--CceEEechHHcCHHH---hhhcccccCcEEEEEcCccCCCCCCHH
Confidence 344678999999999999999999999998776 457899999998754 22222 57899999999999999999
Q ss_pred HHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHH
Q 005109 179 AARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPE 258 (714)
Q Consensus 179 a~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~ 258 (714)
|+.|++||... ...|++++||||||||++|+|||+++|.++++|+++||++++|+|+||++.+++++|+.|++++|++
T Consensus 90 ~~~F~~~L~~~--~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~~~~~~~~~W~~~l~~~ 167 (618)
T 3qe2_A 90 AQDFYDWLQET--DVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWLA 167 (618)
T ss_dssp GHHHHHHHHHC--CCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhc--cccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccccccCCCcHHHHHHHHHHHHHH
Confidence 99999999832 1569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCCCCCCCCccccccceEEEEecCCCcc---cCc--cccCCCCCCccccCCCCeeeEEeeeecccCCCCCCc
Q 005109 259 LDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADAS---VGE--KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRS 333 (714)
Q Consensus 259 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~ 333 (714)
|.+.++.+... .....+.|++......... ..+ ......+....|+.++|+.|+|+.|++|+. .++|+
T Consensus 168 l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~n~~Lt~-~~~~~ 240 (618)
T 3qe2_A 168 VCEHFGVEATG------EESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERH 240 (618)
T ss_dssp HHHHHTCCCC---------CCCCSEEEEECTTCCGGGSBCSCCSSTTTTTSCCSCCSSSSCEEEEEEEEEECSC-CSSSC
T ss_pred HHHHhCCCccc------ccccccceeEEecccccccccccccccccccccccCCCcccCCcEEEEEEeEEEcCC-CCCCc
Confidence 99987532111 0112356676654321110 000 000112234567788999999999999985 57899
Q ss_pred eeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCC-cchHHHHHHh
Q 005109 334 CTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTK 412 (714)
Q Consensus 334 ~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~p-p~tl~~~l~~ 412 (714)
|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|+.+.++..++. ...+.||| |||++++|++
T Consensus 241 ~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~------~~~~~~~p~~~tl~~~l~~ 314 (618)
T 3qe2_A 241 LMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTY 314 (618)
T ss_dssp EEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTT------CSCCSSSSSSEEHHHHHHH
T ss_pred EEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCcc------ccCCCCCCCceEHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999865432 23466899 9999999999
Q ss_pred cccccCCccHHHHHHHHHHcCCHhHHHHHHHhc--CccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCc
Q 005109 413 YADLLSSPKKSALLALAAHASDPTEADRLRHLA--SPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQ 490 (714)
Q Consensus 413 ~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~--s~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~ 490 (714)
|+||+++|+|++|+.||+||+|+.||++|++|+ +++|+++|.+|+.+.+++++|+|++||++++|+++|++. +|+++
T Consensus 315 ~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l~~~-lp~l~ 393 (618)
T 3qe2_A 315 YLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQ 393 (618)
T ss_dssp TBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCC
T ss_pred EeecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHHh-ccccc
Confidence 999999999999999999999999999999999 788999999999999999999999999999999999975 59999
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCC-CCCCCCCceeeEEEecCCccCCCCCCCCeEEE
Q 005109 491 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP-MEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 569 (714)
Q Consensus 491 pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~-g~~~~~~~~v~i~v~~~~F~lp~~~~~piImI 569 (714)
||+|||||+|..++++++|+|++|.+.++.++.+.|+||+||+++.+ |+. .....++|++|.|.|++|.++.+|+|||
T Consensus 394 pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~-~~~~~v~v~~p~g~F~lp~~~~~piimI 472 (618)
T 3qe2_A 394 ARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGEN-GGRALVPMFVRKSQFRLPFKATTPVIMV 472 (618)
T ss_dssp CEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC------CCEEEEEEECCSCCCCSSTTSCEEEE
T ss_pred cceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCC-CcceEEEEEEecCcccCCCCCCCCeEEE
Confidence 99999999998778999999999988888899999999999999988 441 1112689999999999998888999999
Q ss_pred ecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhh
Q 005109 570 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 649 (714)
Q Consensus 570 a~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e 649 (714)
|+||||||||||+|++...+..+...++++||||||+++.|++|++||++|.+.+.+++++++|||++..|+||||+|.+
T Consensus 473 g~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~~k~yVqd~l~~ 552 (618)
T 3qe2_A 473 GPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQ 552 (618)
T ss_dssp CCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCCCCCcHHHHHHH
Confidence 99999999999999998765554455899999999999559999999999999999889999999998889999999999
Q ss_pred chHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 650 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 650 ~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
+.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 553 ~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~ 617 (618)
T 3qe2_A 553 DREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617 (618)
T ss_dssp THHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEeec
Confidence 99999998888999999999559999999999999999999999999999999999999999999
|
| >2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-109 Score=965.63 Aligned_cols=587 Identities=33% Similarity=0.600 Sum_probs=505.4
Q ss_pred ccccCCceEEEEEeCCCchHHHHHHHHHHHHH-hhcCCCeeEEecCccccccchHHHHhhcCC-CeEEEEEeCCCCCCCC
Q 005109 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEAR-ARYDKAIFKVVDIDDYADEEDEYEEKLKKE-NIVFFFLATYGDGEPT 176 (714)
Q Consensus 99 ~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~-~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~-~~vif~~sTyG~G~~p 176 (714)
+....+++++|+|||||||||++|++|++++. +.| ..+.++|+++++.+ ++..+ +.+||++||||+|++|
T Consensus 44 ~~~~~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~g--~~v~v~~l~~~~~~------~l~~~~~~vi~~~sT~G~G~~p 115 (682)
T 2bpo_A 44 VVTENNKNYLVLYASQTGTAEGFAKAFSKELVAKFN--LNVMCADVENYDFE------SLNDVPVIVSIFISTYGEGDFP 115 (682)
T ss_dssp HHHHTTCSEEEEEECSSSHHHHHHHHHHHHHHHHHC--CCEEEEETTSSCGG------GGGGCCSEEEEEEECBTTTBCC
T ss_pred HHhcCCCeEEEEEECCchHHHHHHHHHHHHhHHhcC--CceEEeehHHCCHH------HHhhcCCeEEEEeCccCCCCCC
Confidence 34456789999999999999999999999998 655 56789999999864 46678 9999999999999999
Q ss_pred chHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC-CchhhHHHHHHHH
Q 005109 177 DNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ-CIEDDFSAWRELV 255 (714)
Q Consensus 177 dna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~-~~e~~f~~W~~~l 255 (714)
+|+..|++||.... ...|++++|||||+||++|+|||.++|.++++|+++||+++.|++++|++. +.+++|++|.++|
T Consensus 116 ~~~~~F~~~l~~~~-~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~~~~~~~~~~W~~~l 194 (682)
T 2bpo_A 116 DGAVNFEDFICNAE-AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGAGTTDEDYMAWKDSI 194 (682)
T ss_dssp SSCHHHHHHHHTCC-TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEEecCCcccHHHHHHHHHHH
Confidence 99999999998321 235899999999999999999999999999999999999999999999874 7899999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCccccccceEEEEecC--CCcccCccc---cCC--------CCCCccccCCCCeeeEEeee
Q 005109 256 WPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDN--ADASVGEKS---WGN--------ANGHAVYDAQHPCRSNVAVR 322 (714)
Q Consensus 256 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~--------~~~~~~~~~~~p~~a~v~~~ 322 (714)
|++|.+.+..+... . ...|.|++...+. ......+.. ... .+....|+.++|+.|+|+.+
T Consensus 195 ~~~l~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~ 267 (682)
T 2bpo_A 195 LEVLKDELHLDEQE----A---KFTSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVKS 267 (682)
T ss_dssp HHHHHHHTTCCCCC----C---CCCCSBCCEECSSCCTTSCSSCSSGGGSTTSCCCCCTTCCBCSCCBTTBCCCEEEEEE
T ss_pred HHHHHhhcCCcccc----c---ccCCcceeEecccCCccccccCccccccccccccccccccccCcccCCCceEEEEEEE
Confidence 99999887532211 0 1123344433221 000000000 000 01234577889999999999
Q ss_pred ecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCC
Q 005109 323 KELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP 402 (714)
Q Consensus 323 ~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~p 402 (714)
++|+. +++|+|+||+||+++++++|+|||||+|||.|+++.|+++|++||+++|+.|+++..++ ..+.|||
T Consensus 268 ~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~--------~~~~p~p 338 (682)
T 2bpo_A 268 RELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDP--------TVKVPFP 338 (682)
T ss_dssp EECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSST--------TCCCSSC
T ss_pred EEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCc--------ccCCCCC
Confidence 99998 88999999999999999999999999999999999999999999999999999875432 2456899
Q ss_pred -cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC----CCCCC
Q 005109 403 -PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP----SAKPP 477 (714)
Q Consensus 403 -p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~fp----s~~~p 477 (714)
|||++++|++|+||+++|+|++|+.||+||+|++||++|++|+ +|+++|.+|+...++|++|+|.+|| ++++|
T Consensus 339 ~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~~~~s~~~p 416 (682)
T 2bpo_A 339 TPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSDGAKWDTVP 416 (682)
T ss_dssp SSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHTTCCCTTSC
T ss_pred CCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccCcccccCCC
Confidence 9999999999999999999999999999999999999999998 6999999999999999999999999 88999
Q ss_pred hHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCC---CccccCccchhhcccCCC------------CCCC
Q 005109 478 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT---GRVHKGLCSTWMKNSLPM------------EKSN 542 (714)
Q Consensus 478 ~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~---gr~~~G~~S~~L~~~~~g------------~~~~ 542 (714)
+++++.. +|+++||+|||||+|..++++++|+|+++.+.++. ++.+.|+||+||+++.++ +...
T Consensus 417 ~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~ 495 (682)
T 2bpo_A 417 MQFLVES-VPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYD 495 (682)
T ss_dssp HHHHHHH-SCBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCCC
T ss_pred HHHHHHh-CcccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccccccccee
Confidence 9998865 69999999999999987789999999988887775 678899999999987662 2111
Q ss_pred C--------CceeeEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh------cCCCCCcEEEEEeeecCC
Q 005109 543 D--------CSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE------AGAELGPSLLFFGCRNRK 608 (714)
Q Consensus 543 ~--------~~~v~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~------~~~~~~~~~Lf~G~R~~~ 608 (714)
. +..++++++.+.|+||.++.+|+||||+||||||||||+|++...+. .+...++++||||||++.
T Consensus 496 i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~ 575 (682)
T 2bpo_A 496 LNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTD 575 (682)
T ss_dssp SSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSS
T ss_pred eccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChh
Confidence 0 13688999989999998888999999999999999999999988664 333458999999999995
Q ss_pred cccchHHHHHHHH-HcCCCcEEEEEEec-CCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHH
Q 005109 609 MDYIYEDELNNFV-QSGALSQLIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 686 (714)
Q Consensus 609 ~D~ly~dEL~~~~-~~g~~~~l~~a~Sr-~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~ 686 (714)
|++|++||++|+ +.+.+++++++||| ++..++||||+|.++++.+++++.++++||||||+++|+++|+++|.+|++
T Consensus 576 -D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V~~~L~~i~~ 654 (682)
T 2bpo_A 576 -DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILS 654 (682)
T ss_dssp -SCTTTTTHHHHHHHHGGGEEEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHhcCCceEEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHHHHHHHHHHHHH
Confidence 999999999995 55778899999999 566899999999999999999887899999999977999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 687 EQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 687 ~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++++++.++|++|+++|+++|||++|||
T Consensus 655 ~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 655 RGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 9999999999999999999999999999
|
| >1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-104 Score=925.87 Aligned_cols=586 Identities=31% Similarity=0.581 Sum_probs=494.9
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
..+++++|+|||||||||.+|++|++.+. .+ ..+++++|++|+.+ +|..++++||++||||+|+||+|++.
T Consensus 9 ~~~~k~~IlY~S~TG~te~~A~~l~~~l~-~~--~~~~v~~m~~~d~~------~l~~~~~vl~vtsT~G~Gdpp~n~~~ 79 (688)
T 1tll_A 9 AKRVKATILYATETGKSQAYAKTLCEIFK-HA--FDAKAMSMEEYDIV------HLEHEALVLVVTSTFGNGDPPENGEK 79 (688)
T ss_dssp CCSCEEEEEEECSSSHHHHHHHHHHHHHT-TT--SEEEEEETTTSCTT------SGGGCSEEEEEECCBTTTBCCGGGHH
T ss_pred cCCCeEEEEEECCchHHHHHHHHHHHHHh-cC--CCcEEeecccCChh------HhccCceEEEEEcccCCCcCCHHHHH
Confidence 34578999999999999999999999986 33 56899999999864 46788999999999999999999999
Q ss_pred HHHHHHhcc----------------------------------------CCCccCCceEEEEeccCCchhHHHHHHHHHH
Q 005109 182 FYKWFTEKE----------------------------------------GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVD 221 (714)
Q Consensus 182 F~~~L~~~~----------------------------------------~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld 221 (714)
|++||.... ....|+|++||||||||++|+|||++++.+|
T Consensus 80 F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~ld 159 (688)
T 1tll_A 80 FGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVD 159 (688)
T ss_dssp HHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHHH
T ss_pred HHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchHHHHHHHHHHH
Confidence 999998320 0235899999999999999999999999999
Q ss_pred HHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCC---C---CCc-cccccceEEEEecCCCcc
Q 005109 222 EILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTV---S---TPY-TAAISEYRVVFYDNADAS 294 (714)
Q Consensus 222 ~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~~~~~~~~~---~---~~~-~~~~~~~~~~~~~~~~~~ 294 (714)
++|+++||++++++++||+..+.+++|+.|.+++|++|++.+......... . .+. ....+.+++.........
T Consensus 160 ~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (688)
T 1tll_A 160 TLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDRSWKRNKFRLTYVAEAPDL 239 (688)
T ss_dssp HHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------CCSSSCCTTTEEEEECSCCCCH
T ss_pred HHHHHcCCceeecceeeccCCCcHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcceEEecccccccc
Confidence 999999999999999999988899999999999999999876432111000 0 000 011234555442211000
Q ss_pred cCccccCCCCCCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCC-CCccCCCCeeEEeccCCHHHHHHHHHHhC
Q 005109 295 VGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLLG 373 (714)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~ 373 (714)
......+..++|+.++|+.+++|+.++++|+|+||+||++++ +++|+|||||+|||.|+++.|+++|++||
T Consensus 240 --------~~~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~ 311 (688)
T 1tll_A 240 --------TQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLE 311 (688)
T ss_dssp --------HHHHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTCS
T ss_pred --------cccccccccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCCHHHHHHHHHHhC
Confidence 000112445789999999999999999999999999999875 79999999999999999999999999998
Q ss_pred C--CCCcEEEEeeCCCCCCCCC---CCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCcc
Q 005109 374 L--SPDTYFSLHTDKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPA 448 (714)
Q Consensus 374 l--~~d~~~~i~~~~~~~~~~~---~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~ 448 (714)
+ ++|+.+.++..++..+|.+ ....+.+|||||++++|++|+||+++|+|.+|+.||+||+|+.||++|++|++
T Consensus 312 ~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ek~~L~~l~~-- 389 (688)
T 1tll_A 312 DAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK-- 389 (688)
T ss_dssp SCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--
T ss_pred CCCCCCeEEEEeccccccCCCcccccccccCCCCCccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHHHHHHHHHHhc--
Confidence 6 6889999875422222211 11234577899999999999999999999999999999999999999999986
Q ss_pred CHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCC--CccccC
Q 005109 449 GKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKG 526 (714)
Q Consensus 449 g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~--gr~~~G 526 (714)
+++.|.+|+...+++++|+|.+||++++|+++++.. +|++++|+|||||+|..++++++|+|+++.+.++. ++.+.|
T Consensus 390 ~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G 468 (688)
T 1tll_A 390 GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHG 468 (688)
T ss_dssp CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEEC
T ss_pred CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHh-CcccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCC
Confidence 789999999999999999999999999999988865 69999999999999986678999999988776554 467889
Q ss_pred ccchhhcccCCCCCCCCCceeeEEEe-cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEee
Q 005109 527 LCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGC 604 (714)
Q Consensus 527 ~~S~~L~~~~~g~~~~~~~~v~i~v~-~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~-~~~~~~~~~Lf~G~ 604 (714)
.||+||+++.+|+ .++|+++ .+.|.+|.++.+|+||||+|||||||++|+|++..... .+...++++|||||
T Consensus 469 ~~S~~L~~l~~Gd------~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~ 542 (688)
T 1tll_A 469 VCSSWLNRIQADD------VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGC 542 (688)
T ss_dssp HHHHHHTTCCTTS------EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEE
T ss_pred chhHHHHhCCCCC------EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEe
Confidence 9999999887765 6889985 55899998888999999999999999999999987532 12234799999999
Q ss_pred ecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCC-cccccchhhhc-hHHHHhcc-cCCcEEEEecCchhhHHHHHHHH
Q 005109 605 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTL 681 (714)
Q Consensus 605 R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~-k~yVq~~l~e~-~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L 681 (714)
|+++.|++|++||++|.+.+.+++++++|||++.. ++||||+|.++ ...+++++ ..+++|||||| .+|+++|.++|
T Consensus 543 R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp-~~M~~~V~~~L 621 (688)
T 1tll_A 543 RQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAI 621 (688)
T ss_dssp SCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEE-HHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEEeCC-HHHHHHHHHHH
Confidence 99976899999999999999888999999998764 89999999988 77788766 57899999999 68999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 682 HTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 682 ~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
.++++++|+++.++|++|+++|+.++||++|+|
T Consensus 622 ~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 622 QRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp HHHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHcCCCCHHHHHHHHHhhhhcCCEEEEec
Confidence 999999999999999999999999999999998
|
| >3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-86 Score=735.67 Aligned_cols=429 Identities=41% Similarity=0.763 Sum_probs=382.1
Q ss_pred ccccceEEEEecCCCcc---cCcc--ccCCCCCCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCC
Q 005109 278 AAISEYRVVFYDNADAS---VGEK--SWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGD 352 (714)
Q Consensus 278 ~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD 352 (714)
..+++|+++.+++.+.. ..+. .....++..+|+.++||.|+|+.|++|+. .++|+|+||||||++++++|+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD 99 (458)
T 3qfs_A 21 MSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGD 99 (458)
T ss_dssp ---CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTC
T ss_pred cceeceEEEEccCccccccccCChhhcccccccCCCCCCCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCC
Confidence 45688999988754422 1121 11334567789999999999999999997 578999999999999999999999
Q ss_pred eeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHH
Q 005109 353 HVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAH 431 (714)
Q Consensus 353 ~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~ 431 (714)
||+|||.|+++.|++++++||+++|+.++++..+.. ...+.||| |||++++|++|+||+++|+|+||+.||+|
T Consensus 100 ~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~------~~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~ 173 (458)
T 3qfs_A 100 HVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQY 173 (458)
T ss_dssp EEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTT------CSCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGG
T ss_pred EEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCcc------cccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999864432 23466899 99999999999999999999999999999
Q ss_pred cCCHhHHHHHHHhcC--ccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEE
Q 005109 432 ASDPTEADRLRHLAS--PAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHV 509 (714)
Q Consensus 432 ~~d~~ek~~L~~l~s--~~g~~~y~~~i~~~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~l 509 (714)
|+|+.||++|++|++ ++|+++|.+|+.+.+++++|||.+||++++|+++|++. +|+++||+|||||+|..++++++|
T Consensus 174 a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~-lp~l~pR~YSIsSsp~~~~~~i~l 252 (458)
T 3qfs_A 174 ASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQARYYSIASSSKVHPNSVHI 252 (458)
T ss_dssp BCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEE
T ss_pred cCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHhh-CCCCcceeEeeccCcccCCCEEEE
Confidence 999999999999987 47899999999999999999999999999999999975 599999999999999877899999
Q ss_pred EEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhh
Q 005109 510 TCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ 589 (714)
Q Consensus 510 tv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~ 589 (714)
+|++|.+.+..++.+.|+||+||+++.++++...+..++++++.|.|++|.++.+|+||||+|||||||++|+|++..+.
T Consensus 253 tV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~ 332 (458)
T 3qfs_A 253 CAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLR 332 (458)
T ss_dssp EEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHH
Confidence 99999888888999999999999999887642222258899999999999888899999999999999999999987654
Q ss_pred hcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEecC
Q 005109 590 EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGD 669 (714)
Q Consensus 590 ~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGp 669 (714)
+.+...++++||||||+...|++|++||++|.+.+.+++++++|||++..|+||||+|.++.+.+|+++.++++||||||
T Consensus 333 ~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp 412 (458)
T 3qfs_A 333 QQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGD 412 (458)
T ss_dssp HHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEE
T ss_pred hcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECC
Confidence 44434579999999999755999999999999999888999999999888999999999999999998888999999999
Q ss_pred chhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 670 AKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 670 a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 413 ~~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 413 ARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEEec
Confidence 668999999999999999999999999999999999999999999
|
| >2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-81 Score=708.81 Aligned_cols=407 Identities=34% Similarity=0.622 Sum_probs=355.7
Q ss_pred CCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCC--CcEEEE
Q 005109 305 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFSL 382 (714)
Q Consensus 305 ~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~--d~~~~i 382 (714)
+..+|+.++|+.|+|+.+++|+.++++|+|+||+||+++++++|+|||||+|||.|+++.|+++|++||+++ +..|.+
T Consensus 105 ~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~ 184 (539)
T 2qtl_A 105 QVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLL 184 (539)
T ss_dssp --------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEE
T ss_pred ccCCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 456788999999999999999999999999999999999999999999999999999999999999999985 567888
Q ss_pred eeCCCCCCCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcC
Q 005109 383 HTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 461 (714)
Q Consensus 383 ~~~~~~~~~~~~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~ 461 (714)
+..++... .+..++++|| |||++++|++|+||+++|+|.||+.||+||+|+.||++|.+|++++|+++|.+|+...+
T Consensus 185 ~~~~~~~~--~~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~ 262 (539)
T 2qtl_A 185 KIKADTKK--KGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAC 262 (539)
T ss_dssp EECTTCCC--TTCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTT
T ss_pred eccccccC--CCccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcC
Confidence 76543221 1346788999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEec--CCCCccccCccchhhccc----
Q 005109 462 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEK--TPTGRVHKGLCSTWMKNS---- 535 (714)
Q Consensus 462 ~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~--~~~gr~~~G~~S~~L~~~---- 535 (714)
++++|+|.+||++++|+++|++. +|+++||+|||||+|..++++++|+|+++.+. +..++.+.|+||+||+++
T Consensus 263 ~~lldvL~~fps~~~p~~~ll~~-lp~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~ 341 (539)
T 2qtl_A 263 ACLLDLLLAFPSCQPPLSLLLEH-LPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASV 341 (539)
T ss_dssp CCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTT
T ss_pred CCHHHHHHhCCCcCCCHHHHHHh-CcCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhh
Confidence 99999999999999999999975 59999999999999976679999999988664 445577889999999998
Q ss_pred -------CCCCC-CCCCceeeEEEecC-CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC--CCCCcEEEEEee
Q 005109 536 -------LPMEK-SNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG--AELGPSLLFFGC 604 (714)
Q Consensus 536 -------~~g~~-~~~~~~v~i~v~~~-~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~--~~~~~~~Lf~G~ 604 (714)
.+|+. ...+..++|++|.| .|++|.++.+|+||||+||||||||||+|+|....+.+ ...++++|||||
T Consensus 342 ~~~~~~~~~Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~ 421 (539)
T 2qtl_A 342 LQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGC 421 (539)
T ss_dssp C--------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEE
T ss_pred ccccccCCCCCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEE
Confidence 44430 01122688999864 89999888899999999999999999999987655332 234899999999
Q ss_pred ecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC------CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHH
Q 005109 605 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDV 677 (714)
Q Consensus 605 R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~------~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V 677 (714)
|+++.|++|++||++|.+.+.+++++++|||++. .++||||+|.++...+|+++ .++++||||||+++|+++|
T Consensus 422 R~~~~D~ly~dEL~~~~~~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V 501 (539)
T 2qtl_A 422 RHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDV 501 (539)
T ss_dssp SCTTTCCTTHHHHHHHHHTTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCCCcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHHH
Confidence 9995599999999999999998899999999976 79999999999999999988 5689999999955999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 678 HRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 678 ~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 502 ~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 502 HDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 9999999999999999999999999999999999999
|
| >4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-78 Score=664.93 Aligned_cols=382 Identities=34% Similarity=0.613 Sum_probs=339.5
Q ss_pred CCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCC
Q 005109 313 HPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPL 392 (714)
Q Consensus 313 ~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~ 392 (714)
.++.|+|+.|++|+.++++|+|+|||||++ ++++|+|||||+|||.|+++.|+++|++||+++|+.+.++....
T Consensus 5 ~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~----- 78 (393)
T 4dql_A 5 GAFSTNVVASKELQQPGSARSTRHLEIELP-KEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEE----- 78 (393)
T ss_dssp CCEEEEEEEEEECSCTTCSCCEEEEEEECC-TTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC--------
T ss_pred CcEEEEEEeEEEcCCCCCCceEEEEEEECC-CCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCC-----
Confidence 577899999999999999999999999997 58999999999999999999999999999999999887753221
Q ss_pred CCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhC
Q 005109 393 GKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEF 471 (714)
Q Consensus 393 ~~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvl~~f 471 (714)
.....|++ |||++++|++ +||+++|+|++|+.||+||+|+.+|++|++|++. +.|.+|+...+++++|+|.+|
T Consensus 79 --~~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~f 152 (393)
T 4dql_A 79 --KLAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKY 152 (393)
T ss_dssp ----------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHC
T ss_pred --ccccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhC
Confidence 11244678 9999999999 9999999999999999999999999999999873 479999999999999999999
Q ss_pred CCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCc-cccCccchhhcccCCCCCCCCCceeeEE
Q 005109 472 PSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 472 ps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr-~~~G~~S~~L~~~~~g~~~~~~~~v~i~ 550 (714)
|++++|+++|++. +|+++||+|||||+|..++++++|+|+++.+.+..|+ .+.|+||+||+++.+|+ .+.++
T Consensus 153 ps~~~p~~~~l~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd------~v~v~ 225 (393)
T 4dql_A 153 PACEMKFSEFIAL-LPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGD------TITCF 225 (393)
T ss_dssp TTCCCCHHHHHHT-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTC------EEEEE
T ss_pred CCCCCCHHHHHHh-CCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcC------EEEEE
Confidence 9999999999975 6999999999999998778999999998877666554 46799999999987765 56765
Q ss_pred Ee--cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcE
Q 005109 551 VR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 628 (714)
Q Consensus 551 v~--~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~ 628 (714)
++ .|.|++|.++.+|+||||+|||||||+||+|++......+...++++||||||++..|++|++||++|.+.+.+ +
T Consensus 226 v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l-~ 304 (393)
T 4dql_A 226 ISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII-T 304 (393)
T ss_dssp EECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSC-E
T ss_pred EEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCe-E
Confidence 54 68999998888999999999999999999999876655554567899999999964599999999999988765 7
Q ss_pred EEEEEec-CCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 005109 629 LIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 707 (714)
Q Consensus 629 l~~a~Sr-~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~g 707 (714)
++++||| ++..|+||||++.++.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|
T Consensus 305 l~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~ 384 (393)
T 4dql_A 305 LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKG 384 (393)
T ss_dssp EEEEESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 9999999 566899999999999999999888899999999978899999999999999999999999999999999999
Q ss_pred CeEEecC
Q 005109 708 RYLRDVW 714 (714)
Q Consensus 708 Ry~~DvW 714 (714)
||++|||
T Consensus 385 Ry~~dv~ 391 (393)
T 4dql_A 385 RYAKDVW 391 (393)
T ss_dssp CEEEEEE
T ss_pred CEEEEec
Confidence 9999999
|
| >1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-76 Score=659.19 Aligned_cols=397 Identities=34% Similarity=0.635 Sum_probs=351.5
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCC-CCccCCCCeeEEeccCCHHHHHHHHHHhCC--CCCcEEEEee
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLLGL--SPDTYFSLHT 384 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l--~~d~~~~i~~ 384 (714)
.++.++|+.|+|+.|++|++++++|+|+|||||++++ +++|+|||||+|||.|+++.|+++|++||+ ++|+.+.++.
T Consensus 24 ~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~ 103 (435)
T 1f20_A 24 NVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEM 103 (435)
T ss_dssp HHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEE
T ss_pred ccccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEec
Confidence 4667899999999999999999999999999999875 799999999999999999999999999976 7799998875
Q ss_pred CCCCCCCCC---CCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcC
Q 005109 385 DKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 461 (714)
Q Consensus 385 ~~~~~~~~~---~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~ 461 (714)
.+++.++.+ ....+.+|||||++++|++|+||+++|+|.+|+.||+||+|++||++|++|++ ++++|.+|+....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~ 181 (435)
T 1f20_A 104 LEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKN 181 (435)
T ss_dssp EEEESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHC
T ss_pred cccccCCCCccccccccCCCCCccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhccC
Confidence 322111111 01235678899999999999999999999999999999999999999999986 7899999999999
Q ss_pred CCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCC--CccccCccchhhcccCCCC
Q 005109 462 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPME 539 (714)
Q Consensus 462 ~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~--gr~~~G~~S~~L~~~~~g~ 539 (714)
++++|+|.+||++++|+++++.. +|++++|+|||||+|..++++++|+|+++.+.++. |+.+.|.||+||+++.+|+
T Consensus 182 ~~i~~vl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd 260 (435)
T 1f20_A 182 PTMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADD 260 (435)
T ss_dssp CCHHHHHHHSTTBCBCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTC
T ss_pred CCHHHHHHhCCcCCCCHHHHHHh-CCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCC
Confidence 99999999999999999999975 59999999999999986678999999988776654 3677899999999887765
Q ss_pred CCCCCceeeEEEe-cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEeeecCCcccchHHHH
Q 005109 540 KSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDEL 617 (714)
Q Consensus 540 ~~~~~~~v~i~v~-~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~-~~~~~~~~~Lf~G~R~~~~D~ly~dEL 617 (714)
.+.|+++ .|.|.+|.++.+|+||||+|||||||+||+|++..... .+...++++||||||+++.|++|++||
T Consensus 261 ------~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El 334 (435)
T 1f20_A 261 ------VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREET 334 (435)
T ss_dssp ------EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHH
T ss_pred ------EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHH
Confidence 6889885 56999998888999999999999999999999987531 122348999999999997789999999
Q ss_pred HHHHHcCCCcEEEEEEecCCCC-cccccchhhhc-hHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHH
Q 005109 618 NNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSS 694 (714)
Q Consensus 618 ~~~~~~g~~~~l~~a~Sr~~~~-k~yVq~~l~e~-~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~ 694 (714)
++|.+.+.+++++++|||++.. ++|||++|.++ ...+++++ ..+++|||||| ++|+++|.++|.+++.++++++.+
T Consensus 335 ~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~~~~~~~ 413 (435)
T 1f20_A 335 LQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEE 413 (435)
T ss_dssp HHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHcCCccEEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCC-hhHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999888999999998754 89999999987 77788776 57899999999 689999999999999999999999
Q ss_pred HHHHHHHHHHHCCCeEEecC
Q 005109 695 KAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 695 ~a~~~~~~l~~~gRy~~DvW 714 (714)
+|++|+++|+++|||++|||
T Consensus 414 ~a~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 414 DAGVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEec
Confidence 99999999999999999999
|
| >1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-74 Score=631.65 Aligned_cols=367 Identities=31% Similarity=0.570 Sum_probs=335.8
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|+.++|+.|+|+.|++|+.++++|+|+||+||+++++++|+|||||+|+|+|+++.|+++|++||+++|+.+.+.
T Consensus 5 ~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~---- 80 (374)
T 1ddg_A 5 PYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE---- 80 (374)
T ss_dssp CCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET----
T ss_pred CCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC----
Confidence 5778899999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
+ .|||++++|++|+||+ +|+|++|+.||+||+|++ |++|++ +++.|.+|+. +++++|+
T Consensus 81 -~------------~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~----L~~l~~--~~~~~~~~~~--~~~~~~v 138 (374)
T 1ddg_A 81 -G------------KTLPLNEALQWHFELT-VNTANIVENYATLTRSET----LLPLVG--DKAKLQHYAA--TTPIVDM 138 (374)
T ss_dssp -T------------EEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT----TGGGTT--CTHHHHHHHH--HSCHHHH
T ss_pred -C------------CCccHHHHHHhcccCC-CCCHHHHHHHHHHCCCHH----HHHHhc--ChHHHHHHHc--CCCHHHH
Confidence 1 1799999999999999 899999999999999974 888874 7889999987 5899999
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCce
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSW 546 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~ 546 (714)
|.+||+ ++++|||+.+ .+++++|+|||||+|..+++.++|+|+++.+.+. ++.+.|+||+||++ +.+|+ .
T Consensus 139 l~~~p~-~~~~Gq~v~l-~~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd------~ 209 (374)
T 1ddg_A 139 VRFSPA-QLDAEALINL-LRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEG------E 209 (374)
T ss_dssp HHHSCC-CCCHHHHHHH-SCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSC------E
T ss_pred HHHCCC-CCCHHHHHhh-ccCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCC------E
Confidence 999999 9999999975 4789999999999998667899999998866655 67788999999998 76665 6
Q ss_pred eeEEEe-cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC
Q 005109 547 APIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 625 (714)
Q Consensus 547 v~i~v~-~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~ 625 (714)
+.+.++ .+.|.+|.++.+|+||||+|||||||+||++++...+. .++++||||||+++.|++|++||++|.+.+.
T Consensus 210 v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~ 285 (374)
T 1ddg_A 210 VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGV 285 (374)
T ss_dssp EEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTS
T ss_pred EEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCCchhhhhHHHHHHHHHHhCC
Confidence 888885 56899998888999999999999999999999987642 2789999999998449999999999999998
Q ss_pred CcEEEEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEec-CchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005109 626 LSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG-DAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 704 (714)
Q Consensus 626 ~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCG-pa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 704 (714)
+++++++|||++..++|||++|.++.+.+++++.++++||||| | ++|+++|+++|.++++++++++.++|++|+++|+
T Consensus 286 ~~~l~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p-~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 364 (374)
T 1ddg_A 286 LTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDA-NRMAKDVEQALLEVIAEFGGMDTEAADEFLSELR 364 (374)
T ss_dssp CCEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECT-TTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8899999999988899999999999888998887799999999 6 8999999999999999999999999999999999
Q ss_pred HCCCeEEecC
Q 005109 705 MTGRYLRDVW 714 (714)
Q Consensus 705 ~~gRy~~DvW 714 (714)
++|||++|||
T Consensus 365 ~~~Ry~~dv~ 374 (374)
T 1ddg_A 365 VERRYQRDVY 374 (374)
T ss_dssp HTTCEEEEEC
T ss_pred HCCCeEEecC
Confidence 9999999999
|
| >1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=328.25 Aligned_cols=273 Identities=24% Similarity=0.450 Sum_probs=222.5
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.++..+|+.++|+.+++++..+++++++||+|+.++. +.|+||++|.|+++|.. .
T Consensus 31 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~------------------------~ 85 (314)
T 1fnb_A 31 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-IPYREGQSVGVIPDGED------------------------K 85 (314)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-CCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-CCcCCCCEEEEecCCCC------------------------c
Confidence 3556778899999999999877788999999998754 89999999999876521 0
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
.|
T Consensus 86 ------------------------------------------------------------~g------------------ 87 (314)
T 1fnb_A 86 ------------------------------------------------------------NG------------------ 87 (314)
T ss_dssp ------------------------------------------------------------TS------------------
T ss_pred ------------------------------------------------------------CC------------------
Confidence 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
.+..+|+|||+|+|.. +++.++|+|+.+.+.+..|+.+.|.||+||+++.+|+
T Consensus 88 -------------------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd----- 143 (314)
T 1fnb_A 88 -------------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGA----- 143 (314)
T ss_dssp -------------------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTC-----
T ss_pred -------------------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCC-----
Confidence 0236899999999863 3578999998765656666667899999999987765
Q ss_pred ceeeEEEecCCcc-CCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 545 SWAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 545 ~~v~i~v~~~~F~-lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.+.|.+|.|.|. +|.+..+|+||||+|||||||++|++++......+ ...++++||||||+.+ |++|.+||+++.+
T Consensus 144 -~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~~l~~ 221 (314)
T 1fnb_A 144 -EVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 221 (314)
T ss_dssp -EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHHHHHH
T ss_pred -EEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHH-HhhhHHHHHHHHH
Confidence 578888888764 56555789999999999999999999987543111 1136899999999997 9999999999988
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhccc-CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005109 623 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 696 (714)
Q Consensus 623 ~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i~-~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 696 (714)
.+. .+++++++||++. .++|||++|.+....+++.+. .++.||+||| ++|+++|.+.|.+++.+.| . +|
T Consensus 222 ~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-~---~~ 296 (314)
T 1fnb_A 222 KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEG-I---DW 296 (314)
T ss_dssp HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C---CH
T ss_pred hCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECC-HHHHHHHHHHHHHHHHHhC-c---hH
Confidence 765 6789999999753 578999999887777776553 6889999999 8999999999999998865 2 57
Q ss_pred HHHHHHHHHCCCeEEecC
Q 005109 697 ESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 697 ~~~~~~l~~~gRy~~DvW 714 (714)
++|+++|+++|||++|||
T Consensus 297 ~~~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 297 IEYKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCcEEEecC
Confidence 899999999999999999
|
| >2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=324.08 Aligned_cols=274 Identities=25% Similarity=0.451 Sum_probs=221.8
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.++...|+.+.|+.+++++..++.++++|++|++++..+.|+||+++.|+++|.. .
T Consensus 15 ~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 70 (304)
T 2bmw_A 15 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD------------------------K 70 (304)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc------------------------c
Confidence 4556778899999999999888888999999998866789999999999887621 0
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
+ |
T Consensus 71 ~------------------------------------------------------------g------------------ 72 (304)
T 2bmw_A 71 N------------------------------------------------------------G------------------ 72 (304)
T ss_dssp T------------------------------------------------------------S------------------
T ss_pred c------------------------------------------------------------C------------------
Confidence 0 0
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEecCCC-CccccCccchhhcccCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPT-GRVHKGLCSTWMKNSLPMEKSND 543 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~-gr~~~G~~S~~L~~~~~g~~~~~ 543 (714)
.+.++|+|||+|+|.. +++.++|+|+.+.+.++. ++.+.|.||+||+++.+|+
T Consensus 73 -------------------~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd---- 129 (304)
T 2bmw_A 73 -------------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGS---- 129 (304)
T ss_dssp -------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTC----
T ss_pred -------------------CCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCC----
Confidence 0136899999999853 357899999876554432 4456799999999987765
Q ss_pred CceeeEEEecCCc-cCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc--C---CCCCcEEEEEeeecCCcccchHHHH
Q 005109 544 CSWAPIFVRQSNF-KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--G---AELGPSLLFFGCRNRKMDYIYEDEL 617 (714)
Q Consensus 544 ~~~v~i~v~~~~F-~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~--~---~~~~~~~Lf~G~R~~~~D~ly~dEL 617 (714)
.+.|.+|.|.| .+|.+..+|+||||+|||||||++|++++...... + ...++++||||||+.+ |++|.+||
T Consensus 130 --~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el 206 (304)
T 2bmw_A 130 --EVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEEL 206 (304)
T ss_dssp --EEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHH
T ss_pred --EEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChH-hcchHHHH
Confidence 57888888875 46655678999999999999999999998754311 0 0136899999999987 99999999
Q ss_pred HHHHHcCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCC
Q 005109 618 NNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 691 (714)
Q Consensus 618 ~~~~~~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~ 691 (714)
+++.+.+. .+++++++||++. .++|||+++.+..+.+++++ ..++.||+||| ++|+++|+++|.+++.+.| +
T Consensus 207 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~~~~g-~ 284 (304)
T 2bmw_A 207 EEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEG-V 284 (304)
T ss_dssp HHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C
T ss_pred HHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c
Confidence 99988764 6789999999743 47899999998877777765 35789999999 8999999999999998764 4
Q ss_pred CHHHHHHHHHHHHHCCCeEEecC
Q 005109 692 DSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 692 ~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
+ +++++++|+++|||++|||
T Consensus 285 ~---~~~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 285 T---WSDYQKDLKKAGRWHVETY 304 (304)
T ss_dssp C---HHHHHHHHHHTTCEEEEEC
T ss_pred c---HHHHHHHHHHcCCeEEecC
Confidence 3 6789999999999999999
|
| >3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=318.22 Aligned_cols=273 Identities=24% Similarity=0.445 Sum_probs=224.4
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|+...|+.++|+.+++++..+....++||+|+.. ..+.|+||.|+.|.++..
T Consensus 27 ~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~-~~~~~~pGQ~v~l~~~~~-------------------------- 79 (310)
T 3vo2_A 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTE-GEIPYREGQSIGIIADGE-------------------------- 79 (310)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSSB--------------------------
T ss_pred eecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCC-CCCcccCCCEEEEECCCc--------------------------
Confidence 46677899999999999987666778999999964 468899999998865420
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
+. .|
T Consensus 80 ---------------------------~~-------------------------------~g------------------ 83 (310)
T 3vo2_A 80 ---------------------------DK-------------------------------NG------------------ 83 (310)
T ss_dssp ---------------------------CT-------------------------------TS------------------
T ss_pred ---------------------------CC-------------------------------CC------------------
Confidence 00 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
-++++|+|||+|+|.. +++.++|+|+.+.+.+..++.+.|.||+||+++.+|+
T Consensus 84 -------------------~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd----- 139 (310)
T 3vo2_A 84 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA----- 139 (310)
T ss_dssp -------------------CBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTC-----
T ss_pred -------------------CcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCC-----
Confidence 1235799999999963 3578999998776666777778899999999987765
Q ss_pred ceeeEEEecCCcc-CCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHHHHH
Q 005109 545 SWAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQ 622 (714)
Q Consensus 545 ~~v~i~v~~~~F~-lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 622 (714)
.+.|.+|.|.|. +|.+..+|+||||+|||||||++|++++....... ...++++||||||+.+ |++|.+||+++.+
T Consensus 140 -~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~ 217 (310)
T 3vo2_A 140 -DVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELEKMKE 217 (310)
T ss_dssp -EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHHHHHH
T ss_pred -EEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChh-hcccHHHHHHHHH
Confidence 578888888755 56556789999999999999999999987543211 1136899999999997 9999999999998
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005109 623 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 696 (714)
Q Consensus 623 ~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 696 (714)
.+. .+++++++||++. .++|||+++.+..+.+++++ .+++.||+||| ++|+++|+++|.+++.+.+ + ++
T Consensus 218 ~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp-~~M~~~v~~~L~~~~~~~g-~---~~ 292 (310)
T 3vo2_A 218 MAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGL-KGMEKGIDDIMLNLAAKDG-I---DW 292 (310)
T ss_dssp HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEES-TTHHHHHHHHHHHHHHHTT-C---CH
T ss_pred hCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcccCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---CH
Confidence 864 6789999999753 57899999999888888876 46899999999 8999999999999998875 3 58
Q ss_pred HHHHHHHHHCCCeEEecC
Q 005109 697 ESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 697 ~~~~~~l~~~gRy~~DvW 714 (714)
++|+++|+++|||++|||
T Consensus 293 ~~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 293 MQYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp HHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHCCceEEecC
Confidence 899999999999999999
|
| >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=326.60 Aligned_cols=274 Identities=25% Similarity=0.431 Sum_probs=223.1
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.+....|+.++|+.+++++...++++++||+|++++..+.|+||++|.|++++.. .
T Consensus 116 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 171 (402)
T 2b5o_A 116 IYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED------------------------K 171 (402)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE------------------------T
T ss_pred cccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC------------------------c
Confidence 3556778999999999999877888999999998765689999999999876411 0
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
.|
T Consensus 172 ------------------------------------------------------------~g------------------ 173 (402)
T 2b5o_A 172 ------------------------------------------------------------NG------------------ 173 (402)
T ss_dssp ------------------------------------------------------------TT------------------
T ss_pred ------------------------------------------------------------CC------------------
Confidence 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEecCC-CCccccCccchhhcccCCC-CCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTP-TGRVHKGLCSTWMKNSLPM-EKSN 542 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~-~gr~~~G~~S~~L~~~~~g-~~~~ 542 (714)
.+..+|+|||+|+|.. +++.++|+|+.+.+.++ .++.+.|.||+||+++.+| +
T Consensus 174 -------------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d--- 231 (402)
T 2b5o_A 174 -------------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTD--- 231 (402)
T ss_dssp -------------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCC---
T ss_pred -------------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCc---
Confidence 0136899999999863 25789999987544432 3445689999999998776 5
Q ss_pred CCceeeEEEecCCc-cCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcC-CCCCcEEEEEeeecCCcccchHHHHHHH
Q 005109 543 DCSWAPIFVRQSNF-KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF 620 (714)
Q Consensus 543 ~~~~v~i~v~~~~F-~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~ 620 (714)
.+.|.+|.|.| .+|.+..+|+||||+|||||||++|++++...+... ...++++||||||+.+ |++|.+||+++
T Consensus 232 ---~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l 307 (402)
T 2b5o_A 232 ---DVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFEKM 307 (402)
T ss_dssp ---CEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGG-GCTTHHHHHHH
T ss_pred ---eEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHH-HhHHHHHHHHH
Confidence 47788888876 566666789999999999999999999987643211 1136899999999997 99999999999
Q ss_pred HHcCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHH
Q 005109 621 VQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSS 694 (714)
Q Consensus 621 ~~~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~ 694 (714)
.+.+. .+++++++||++. .++|||++|.+..+.+++++ ..+++||+||| ++|+++|.+.|.+++.+.+.
T Consensus 308 ~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP-~~M~~~v~~~L~~~g~~~g~---- 382 (402)
T 2b5o_A 308 AAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRGL---- 382 (402)
T ss_dssp HHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-GGGHHHHHHHHHHHHHHTTC----
T ss_pred HHhCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECC-HHHHHHHHHHHHHHHHHcCc----
Confidence 98765 6789999999743 57899999998877888766 35789999999 89999999999999988764
Q ss_pred HHHHHHHHHHHCCCeEEecC
Q 005109 695 KAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 695 ~a~~~~~~l~~~gRy~~DvW 714 (714)
.+++++++|+++|||++|||
T Consensus 383 ~~~~~~~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 383 NWEEMRRSMKKEHRWHVEVY 402 (402)
T ss_dssp CHHHHHHHHHHTTCEEEEEC
T ss_pred hHHHHHHHHHHCCCEEEecC
Confidence 57889999999999999999
|
| >2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=305.07 Aligned_cols=277 Identities=22% Similarity=0.343 Sum_probs=213.3
Q ss_pred ccCCCCeeeEEeeeecccCCCCCCc---------eeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcE
Q 005109 309 YDAQHPCRSNVAVRKELHTPSSDRS---------CTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTY 379 (714)
Q Consensus 309 ~~~~~p~~a~v~~~~~L~~~~~~r~---------~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~ 379 (714)
+....|+.++|+.+++|+...++++ +++|+|+.++..+.|+||+++.|+++|....
T Consensus 16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~--------------- 80 (314)
T 2rc5_A 16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPE--------------- 80 (314)
T ss_dssp BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHH---------------
T ss_pred CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccc---------------
Confidence 4456788999999999997666666 9999999876668999999999998764210
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHh
Q 005109 380 FSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVA 459 (714)
Q Consensus 380 ~~i~~~~~~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~ 459 (714)
+. | . .+
T Consensus 81 ---------g~------------~-----------------~---------------------~~--------------- 86 (314)
T 2rc5_A 81 ---------KK------------A-----------------K---------------------GL--------------- 86 (314)
T ss_dssp ---------HH------------H-----------------T---------------------TC---------------
T ss_pred ---------cC------------c-----------------c---------------------ch---------------
Confidence 00 0 0 00
Q ss_pred cCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCC---CCCeEEEEEEEEEecCCCCcc-ccCccchhhccc
Q 005109 460 SQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNS 535 (714)
Q Consensus 460 ~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~gr~-~~G~~S~~L~~~ 535 (714)
.+| | +.+|+|||+|+|.. +++.++|+|+.+.+.++.|+. +.|.+|+||+++
T Consensus 87 ---------~~~---------------~-~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l 141 (314)
T 2rc5_A 87 ---------ADV---------------G-YTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDL 141 (314)
T ss_dssp ---------SCC---------------B-CCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTC
T ss_pred ---------hhc---------------C-CCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcC
Confidence 011 1 57899999999852 357899999876444444443 579999999997
Q ss_pred CCCCCCCCCceeeEEEecCCcc-CCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccch
Q 005109 536 LPMEKSNDCSWAPIFVRQSNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 613 (714)
Q Consensus 536 ~~g~~~~~~~~v~i~v~~~~F~-lp~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly 613 (714)
.+|+ .+.|.+|.|.|. +|. +..+|+||||+|||||||++|++++..... ....++++||||||+.+ |++|
T Consensus 142 ~~Gd------~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~-~~~~~~v~l~~g~r~~~-d~~~ 213 (314)
T 2rc5_A 142 KPGD------EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKL-IKFTGNITLVYGAPYSD-ELVM 213 (314)
T ss_dssp CTTC------EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCS-SCBCSCEEEEEEESSGG-GSCS
T ss_pred CCcC------EEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhcc-cCCCCcEEEEEEeCCHH-HHhH
Confidence 7765 578888888765 454 457899999999999999999999875431 11236899999999997 9999
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCCC-----CcccccchhhhchHHHHhcc-cCCcEEEEe-cCchhhHHHHHHHHHHHHH
Q 005109 614 EDELNNFVQSGALSQLIVAFSREGP-----TKEYVQHKMMEKSSDIWNML-SEGAYLYVC-GDAKSMARDVHRTLHTIVQ 686 (714)
Q Consensus 614 ~dEL~~~~~~g~~~~l~~a~Sr~~~-----~k~yVq~~l~e~~~~l~~~i-~~~~~iyvC-Gpa~~M~~~V~~~L~~i~~ 686 (714)
.+||+++.+++..+++++++||++. .++|||+++.+..+.+++.+ ..++. |+| || ++|+++|++.|.++..
T Consensus 214 ~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~~-yvCGGp-~~m~~~v~~~L~~~g~ 291 (314)
T 2rc5_A 214 MDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGRF-YICGGP-KGMEKGVIEEIQKISG 291 (314)
T ss_dssp HHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCEE-EEEESS-TTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCeE-EEeCCc-HHHHHHHHHHHHHHHh
Confidence 9999999876557789999999742 46899999988776676655 33444 999 99 8999999999999865
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 687 EQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 687 ~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
.++ .++.|+++|+++|||++|||
T Consensus 292 --~~i---~~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 292 --NTG---TYEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp --CCS---CHHHHHHHHHHTTCEEEEEC
T ss_pred --ccc---hHHHHHHHHHHCCCEEEecC
Confidence 233 46789999999999999999
|
| >3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=304.62 Aligned_cols=227 Identities=28% Similarity=0.434 Sum_probs=182.2
Q ss_pred CChHHHHHHhcCC---------CcccccccCCCCCC---CCCeEEEEEEEEEecCC-C---CccccCccchhhcccCCCC
Q 005109 476 PPLGVFFAAIVPR---------LQPRYYSISSSPRV---APSRIHVTCALVYEKTP-T---GRVHKGLCSTWMKNSLPME 539 (714)
Q Consensus 476 ~p~~~~l~~i~p~---------l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~-~---gr~~~G~~S~~L~~~~~g~ 539 (714)
..+|||+.+.+|. +.+|+|||+|+|.. +++.++|+|+.+.+..+ . ++.+.|.+|+||+++.+|+
T Consensus 61 ~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd 140 (311)
T 3lo8_A 61 YWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGD 140 (311)
T ss_dssp CCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTC
T ss_pred ccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcC
Confidence 4568887665554 26899999999964 25789999986532222 1 2236799999999987765
Q ss_pred CCCCCceeeEEEecCCccCCC--CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCC-CCcEEEEEeeecCCcccchHHH
Q 005109 540 KSNDCSWAPIFVRQSNFKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE-LGPSLLFFGCRNRKMDYIYEDE 616 (714)
Q Consensus 540 ~~~~~~~v~i~v~~~~F~lp~--~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~-~~~~~Lf~G~R~~~~D~ly~dE 616 (714)
.+.|.+|.|.|.+.+ +..+|+||||+|||||||++|++++......+.. .++++||||||+.+ |++|.+|
T Consensus 141 ------~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~e 213 (311)
T 3lo8_A 141 ------KIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEE 213 (311)
T ss_dssp ------EEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHH
T ss_pred ------EEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChH-HhhHHHH
Confidence 578888988876543 3578999999999999999999998765321111 26799999999997 9999999
Q ss_pred HHHHHHcCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCC
Q 005109 617 LNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 691 (714)
Q Consensus 617 L~~~~~~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~ 691 (714)
|+++.+.+. .+++++++||++. .++|||+.+.+....+++++..++.||+||| ++|+++|++.|.+++.+.+
T Consensus 214 l~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-- 290 (311)
T 3lo8_A 214 FTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRG-- 290 (311)
T ss_dssp HHHHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHhcc--
Confidence 999998765 6789999999754 4799999999887777776667899999999 8999999999999998875
Q ss_pred CHHHHHHHHHHHHHCCCeEEecC
Q 005109 692 DSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 692 ~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
.+|++|+++|+++|||++|||
T Consensus 291 --~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 291 --ESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp --CCHHHHHHHHHHTTCEEEEEC
T ss_pred --HHHHHHHHHHHHCCcEEEecC
Confidence 368899999999999999999
|
| >3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=284.94 Aligned_cols=153 Identities=30% Similarity=0.461 Sum_probs=138.6
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
..+++|+|+|||||||||.+|++|++.+. .+ ..++++++++++.+ ++..++.+||++||||+|+||+||+.
T Consensus 38 ~~~~kv~IlYgS~tGnte~~A~~La~~l~-~g--~~v~v~~l~~~~~~------~l~~~~~vI~~tsTyG~Ge~Pdna~~ 108 (219)
T 3hr4_A 38 ASRVRVTILFATETGKSEALAWDLGALFS-CA--FNPKVVCMDKYRLS------CLEEERLLLVVTSTFGNGDCPGNGEK 108 (219)
T ss_dssp HTSCEEEEEEECSSSHHHHHHHHHHHHHT-TT--SEEEEEEGGGCCGG------GGGTCSEEEEEEECBTTTBCCGGGHH
T ss_pred hcCCcEEEEEECCchHHHHHHHHHHHHHH-cC--CCeEEEEcccCCHh------HhccCCeEEEEEeccCCCcCCHHHHH
Confidence 34578999999999999999999999884 44 56889999999853 47789999999999999999999999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHh
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 261 (714)
|+++|... ...+++++||||||||++|++||.+++.++++|+++||++++|+|+||++.+.+++|+.|+++||++|++
T Consensus 109 F~~~L~~~--~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~~~e~~~~~W~~~l~~~l~~ 186 (219)
T 3hr4_A 109 LKKSLFML--KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELSGQEDAFRSWAVQTFKAACE 186 (219)
T ss_dssp HHHHHHHC--CCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--chhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEEEecCCCcHHHHHHHHHHHHHHHHH
Confidence 99999832 2358999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred hhCC
Q 005109 262 LLRD 265 (714)
Q Consensus 262 ~~~~ 265 (714)
.++.
T Consensus 187 ~~~~ 190 (219)
T 3hr4_A 187 TFDV 190 (219)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 8864
|
| >3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-32 Score=287.97 Aligned_cols=291 Identities=23% Similarity=0.369 Sum_probs=207.0
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|..++|+.++|+.+.+|+.++....++||+|+.. ..+.|.+|..++|.|+..+.. ...+ . + ...
T Consensus 9 ~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~GQ~~~i~~~~~~~~-----~~~~----~----~-~~~ 73 (316)
T 3jqq_A 9 LYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHN-GLFKYLEGHTCGIIPYYNELD-----NNPN----N----Q-INK 73 (316)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECT-TCCCCCTTCEEEECTTCC--------------------------
T ss_pred eecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCC-CCcceecCcEeEEECCCcccc-----cccc----c----c-ccc
Confidence 46678999999999999998888899999999985 469999999999999875422 0000 0 0 000
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
+|+ ++-+++ ++ . +..++
T Consensus 74 ~~~----------------------~~~~~~------------~~---------~------------------h~~~~-- 90 (316)
T 3jqq_A 74 DHN----------------------IINTTN------------HT---------N------------------HNNIA-- 90 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc----------------------cccccc------------cc---------c------------------ccccc--
Confidence 000 000000 00 0 00000
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecC---CCCccccCccchhhcccCCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKT---PTGRVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~---~~gr~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
...+-+...+|+|||||+|.. +.++|+|+.+.+.+ ..++.+.|.||+||.++.+|+
T Consensus 91 --------------~~~~~g~~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd----- 149 (316)
T 3jqq_A 91 --------------LSHIKKQRCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKIND----- 149 (316)
T ss_dssp --------------------CCCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCTTC-----
T ss_pred --------------cccCCCcccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCC-----
Confidence 001225678999999999973 68999998653322 123567899999999888766
Q ss_pred ceeeEEEecCCccCCCC---CCCCeEEEecCCcchhHHHHHHHHHHhhhc------CCCCCcEEEEEeeecCCcccchHH
Q 005109 545 SWAPIFVRQSNFKLPAD---AKVPIIMIGPGTGLAPFRGFLQERFALQEA------GAELGPSLLFFGCRNRKMDYIYED 615 (714)
Q Consensus 545 ~~v~i~v~~~~F~lp~~---~~~piImIa~GTGIAPfrs~lq~~~~~~~~------~~~~~~~~Lf~G~R~~~~D~ly~d 615 (714)
.+.|.+|.|.|.++.+ ..+|+||||+|||||||+||++++...... +...++++||||||+.+ |++|.+
T Consensus 150 -~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~ 227 (316)
T 3jqq_A 150 -DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLN 227 (316)
T ss_dssp -EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGG-GCTTHH
T ss_pred -EEEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHH-HhhcHH
Confidence 5788889999999876 378999999999999999999998765321 11237899999999998 999999
Q ss_pred HHHHHHHcCC-CcEEEEEEecCCC---CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCC
Q 005109 616 ELNNFVQSGA-LSQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 690 (714)
Q Consensus 616 EL~~~~~~g~-~~~l~~a~Sr~~~---~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~ 690 (714)
||+++.+... .+++++++||++. .++|||+.+.+....+++++ ..++.||+||| ++|+++|.+.|.+. |.
T Consensus 228 eL~~l~~~~~~~~~~~~~~s~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP-~~m~~~v~~~l~~~----G~ 302 (316)
T 3jqq_A 228 ELEYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDILKSH----DQ 302 (316)
T ss_dssp HHHHHHHHCTTTEEEEEEEGGGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEEC-STHHHHHHHHHHC-------
T ss_pred HHHHHHHhCCCcEEEEEEECCCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCC-HHHHHHHHHHHHHc----CC
Confidence 9999998754 6789999999753 68999999999887888776 46899999999 89999998877653 33
Q ss_pred CCHHHHHHHHHHHHHCCCeEEecC
Q 005109 691 LDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 691 ~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++. ...+|++.|+|
T Consensus 303 ~~~----------v~~~rih~E~f 316 (316)
T 3jqq_A 303 FDE----------KKKKRVHVEVY 316 (316)
T ss_dssp -CH----------HHHTTEEEEEC
T ss_pred Ccc----------cccccEEEEeC
Confidence 322 34578888875
|
| >1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=236.48 Aligned_cols=148 Identities=30% Similarity=0.632 Sum_probs=130.1
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
..+++++|+|+|+|||||++|+.|++.+.+.+ ..++++|++++. .++..++.+||++||| +|++|+++..
T Consensus 19 ~~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~v~~l~~~~-------~~l~~~d~vi~g~~Ty-~G~~p~~~~~ 88 (191)
T 1bvy_F 19 AHNTPLLVLYGSNMGTAEGTARDLADIAMSKG--FAPQVATLDSHA-------GNLPREGAVLIVTASY-NGHPPDNAKQ 88 (191)
T ss_dssp --CCCEEEEEECSSSHHHHHHHHHHHHHHTTT--CCCEEEEGGGST-------TCCCSSSEEEEEECCB-TTBCCTTTHH
T ss_pred cCCCeEEEEEECCChHHHHHHHHHHHHHHhCC--CceEEeeHHHhh-------hhhhhCCeEEEEEeec-CCCcCHHHHH
Confidence 34678999999999999999999999998765 457888888752 2477899999999999 9999999999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 260 (714)
|+++|... ....|++++|+|||+||++| ++||.+++.++++|+++||+++.|.+++|++.+.+++|++|.+.||+.|.
T Consensus 89 fl~~L~~~-~~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 89 FVDWLDQA-SADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp HHHHHHTC-CSSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-cchhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEecCCChHHHHHHHHHHHHHHhc
Confidence 99999722 12358999999999999999 69999999999999999999999999999866777789999999999996
|
| >1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-26 Score=221.19 Aligned_cols=151 Identities=30% Similarity=0.418 Sum_probs=129.1
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
..|++++|+|+|+||||+++|+.|++.+...+ ..++++++++++. .++.+++.+||++||||.|++|+++..
T Consensus 7 ~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~ii~g~pt~g~G~~p~~~~~ 78 (167)
T 1ykg_A 7 AEMPGITIISASQTGNARRVAEALRDDLLAAK--LNVKLVNAGDYKF------KQIASEKLLIVVTSTQGEGEPPEEAVA 78 (167)
T ss_dssp -----CEEEEECSSSHHHHHHHHHHHHHHHHT--CCCEEEEGGGCCG------GGGGGCSEEEEEEECBGGGBCCGGGHH
T ss_pred CCCCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEeehhhCCH------HHhccCCeEEEEEcccCCCcCChhHHH
Confidence 34678999999999999999999999998765 4578889888764 347789999999999999999999999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHh
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 261 (714)
|+++|... ....+++++|+|||+||++|+|||.+++.++++|+++|++++.+.+.+| .+.++++++|.+++++.|..
T Consensus 79 f~~~l~~~-~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~~d--~~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 79 LHKFLFSK-KAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDAD--VEYQAAASEWRARVVDALKS 155 (167)
T ss_dssp HHHHHTST-TCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEC--TTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-cccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecceecC--CCcHHHHHHHHHHHHHHHHh
Confidence 99999621 1245899999999999999999999999999999999999999998887 45689999999999999876
Q ss_pred hh
Q 005109 262 LL 263 (714)
Q Consensus 262 ~~ 263 (714)
.+
T Consensus 156 ~~ 157 (167)
T 1ykg_A 156 RA 157 (167)
T ss_dssp CC
T ss_pred hc
Confidence 54
|
| >1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-25 Score=226.88 Aligned_cols=183 Identities=17% Similarity=0.262 Sum_probs=146.8
Q ss_pred CChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEec
Q 005109 476 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 476 ~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v~~ 553 (714)
..+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+. ...|.+|+||+ ++.+|+ .+.|..|.
T Consensus 44 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~vk~---------~~~G~~s~~l~~~l~~Gd------~v~v~gP~ 107 (250)
T 1tvc_A 44 FEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRV---------LPEGRFSDYLRNDARVGQ------VLSVKGPL 107 (250)
T ss_dssp CCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECC---------CTTSSSHHHHHHHSSSSS------EEEEEEEE
T ss_pred cCCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEEEE---------CCCCCchHHHHhcCCCCC------EEEEEcCc
Confidence 4578988765565 57899999999863 4789988753 24599999996 777765 57888899
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.++.+..+++||||+|||||||++|++++...+. ..+++||||+|+.+ |++|.+||+++.+....+++++++
T Consensus 108 G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 182 (250)
T 1tvc_A 108 GVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTA----PNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKACV 182 (250)
T ss_dssp CCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHTC----CSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEECC
T ss_pred cccccCccCCceEEEEEeccCHHHHHHHHHHHHhcCC----CceEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEEe
Confidence 9999887656899999999999999999999887532 26899999999998 999999999998766667899999
Q ss_pred ecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 634 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 634 Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
||++. .++||++.+.+. +.+. ..+..+|+||| ++|+++|++.|.+.
T Consensus 183 s~~~~~~~g~~g~v~~~l~~~---~~~~-~~~~~vyvCGp-~~m~~~v~~~l~~~ 232 (250)
T 1tvc_A 183 WHPSGDWEGEQGSPIDALRED---LESS-DANPDIYLCGP-PGMIDAACELVRSR 232 (250)
T ss_dssp SSCSSCCSSSSSSSSHHHHHH---HHHS-SSSSEEEEESS-HHHHHHHHHHHHHH
T ss_pred ccCCCCcCCccceehHHHHhh---hhcc-cCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 98532 477898877643 2221 25789999999 89999999988653
|
| >2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-26 Score=217.11 Aligned_cols=144 Identities=24% Similarity=0.283 Sum_probs=124.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++++|+|+|+||||+++|++|++.+.+.+ ..+.++++.+ . .++.+++.+||++||||+|++|+++..|+
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~--~------~~l~~~d~vi~g~pt~g~g~~p~~~~~f~ 70 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAG--FTTETLHGPL--L------EDLPASGIWLVISSTHGAGDIPDNLSPFY 70 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTT--CCEEEECCTT--S------CSSCSEEEEEEECCTTTTCCTTSSCHHHH
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEecCCC--H------HHcccCCeEEEEECccCCCCCChhHHHHH
Confidence 468999999999999999999999998765 4466666532 2 34678899999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 259 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L 259 (714)
++|... ...+++++|+|||+||++|+|||.+++.++++|+++|++++.+.+++|... +.++++.+|.+++++.|
T Consensus 71 ~~l~~~--~~~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 71 EALQEQ--KPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp HHHHHH--CCCTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred HHHHhh--ccccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 999722 125889999999999999999999999999999999999999999998754 56889999999998876
|
| >2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-24 Score=229.83 Aligned_cols=181 Identities=18% Similarity=0.343 Sum_probs=139.0
Q ss_pred CcccccccCCCCCCCCCeEEEEEEEEEec--CC-C---CccccCccchhhcccCCCCCCCCCceeeEEEecCCccCCCCC
Q 005109 489 LQPRYYSISSSPRVAPSRIHVTCALVYEK--TP-T---GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADA 562 (714)
Q Consensus 489 l~pR~YSIsSsp~~~~~~i~ltv~~v~~~--~~-~---gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~lp~~~ 562 (714)
..+|+|||+|+|.. .+.++|+|+++... +. . .+...|.+|+||+++.+|+ .+.|.+|.|.|.++. .
T Consensus 84 ~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd------~v~v~gP~G~f~~~~-~ 155 (290)
T 2r6h_A 84 ETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGD------KVMMSGPYGDFHIQD-T 155 (290)
T ss_dssp CEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTC------EEEEEEEECCCCCCS-S
T ss_pred CcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCC------EEEEEecccCCcCCC-C
Confidence 46899999999863 47899888653110 00 0 1245799999999977765 578888999999864 4
Q ss_pred CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC----
Q 005109 563 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP---- 638 (714)
Q Consensus 563 ~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~---- 638 (714)
.+|+||||+|||||||++|+++++.... ..++++||||||+.+ |++|.+||+++.+.+..+++++++||+..
T Consensus 156 ~~~~vliagGtGitP~~s~l~~~~~~~~---~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~ 231 (290)
T 2r6h_A 156 DAEMLYIGGGAGMAPLRAQILHLFRTLK---TGRKVSYWYGARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNW 231 (290)
T ss_dssp SCEEEEEEEGGGHHHHHHHHHHHHHTSC---CCSCEEEEEEESSGG-GCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCC
T ss_pred CCeEEEEECccCHHHHHHHHHHHHHhcC---CCCcEEEEEEcCCHH-HHHHHHHHHHHHHhCCCeEEEEEEccCCcccCC
Confidence 6899999999999999999998876432 236899999999997 99999999999887777899999998642
Q ss_pred --CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 639 --TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 639 --~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.++||++.+.+.. +.+.. ..++.||+||| ++|+++|++.|.+.
T Consensus 232 ~g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 277 (290)
T 2r6h_A 232 TGYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGP-GPMANAVKGMLENL 277 (290)
T ss_dssp CSCBSCHHHHHHHHT--TTTCSCGGGEEEEEECC-HHHHHHHHHHHHHH
T ss_pred CCeeEecCHHHHHhH--HhhccCcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 3678887664321 11111 24678999999 89999999988754
|
| >2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=223.80 Aligned_cols=185 Identities=17% Similarity=0.258 Sum_probs=143.8
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
..+|||+.+.+| ....|+|||+|+|. +.+.++|+|+. ...|.+|+||+++.+|+ .+.|.+|
T Consensus 42 ~~pGq~v~l~~~~~g~~~~R~ysi~s~~~-~~~~~~l~vk~---------~~~G~~S~~l~~l~~Gd------~v~v~gP 105 (243)
T 2eix_A 42 LPIGQHMSVKATVDGKEIYRPYTPVSSDD-EKGYFDLIIKV---------YEKGQMSQYIDHLNPGD------FLQVRGP 105 (243)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEEC---------CTTCHHHHHHHTCCTTC------EEEEEEE
T ss_pred cCCceEEEEEEeeCCCEEEeeeeecCCCC-CCCEEEEEEEE---------cCCCCcchHhhcCCCCC------EEEEECC
Confidence 457888865444 23579999999986 35789988863 24699999999887765 5788889
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|+|.++.+..++++|||+|||||||+++++++..... ...+++||||+|+.+ |++|.+||+++.+....++++++
T Consensus 106 ~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~---~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 181 (243)
T 2eix_A 106 KGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPK---EKTIINLIFANVNED-DILLRTELDDMAKKYSNFKVYYV 181 (243)
T ss_dssp ECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTT---CCCEEEEEEEEEEGG-GCTTHHHHHHHHHHCTTEEEEEE
T ss_pred eEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCC---CCcEEEEEEEcCCHH-HhhHHHHHHHHHHHCCCeEEEEE
Confidence 99999987667899999999999999999999875321 236899999999997 99999999999887667789999
Q ss_pred EecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+|++.. .++||++.+.+. +......+..+|+||| ++|+++|++.|.+.
T Consensus 182 ~s~~~~~~~g~~g~v~~~~l~~---~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~ 233 (243)
T 2eix_A 182 LNNPPAGWTGGVGFVSADMIKQ---HFSPPSSDIKVMMCGP-PMMNKAMQGHLETL 233 (243)
T ss_dssp EEECCTTCCSEESSCCHHHHHH---HSCCTTSSEEEEEESS-HHHHHHHHHHHHHH
T ss_pred eCCCCccccCcCCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 998532 357887643221 1111124678999999 89999999988754
|
| >1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=221.48 Aligned_cols=180 Identities=17% Similarity=0.198 Sum_probs=140.9
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchh-hcccCCCCCCCCCceeeEEEec
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW-MKNSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~-L~~~~~g~~~~~~~~v~i~v~~ 553 (714)
...+|||+.+.+|...+|+|||+|+|.. ++.++|+|+.+ ..|.+|+| +.++.+|+ .+.+..|.
T Consensus 29 ~~~pGq~v~l~~~~~~~R~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~~~~~l~~Gd------~v~v~gP~ 92 (232)
T 1qfj_A 29 SFRAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGAS---------EINLYAKAVMDRILKDH------QIVVDIPH 92 (232)
T ss_dssp CCCTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHHS------EEEEEEEE
T ss_pred CcCCCCEEEEECCCCceeeeecCCCCCC-CCcEEEEEEEc---------cCCchhHHHHHhCCCCC------EEEEeCCc
Confidence 3467999877667778999999999863 46899888643 24666765 66676665 57888899
Q ss_pred CCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 554 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 554 ~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
|.|.++.+..+|+||||+|||||||+++++++...+. .++++|+||+|+.+ |++|.+||+++.++...++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T 1qfj_A 93 GEAWLRDDEERPMILIAGGTGFSYARSILLTALARNP----NRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVV 167 (232)
T ss_dssp CSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHCT----TCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEE
T ss_pred cceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcCC----CCcEEEEEeeCCHH-HhhhHHHHHHHHHHCCCeEEEEEE
Confidence 9999886667899999999999999999999987532 36899999999997 999999999998876677899999
Q ss_pred ecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHH
Q 005109 634 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 681 (714)
Q Consensus 634 Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L 681 (714)
|+++. .++||++.+.+. +.+ ..+..+|+||| ++|+++|++.|
T Consensus 168 s~~~~~~~g~~g~v~~~~~~~---~~~--~~~~~vyvCGp-~~m~~~v~~~l 213 (232)
T 1qfj_A 168 EQPEAGWRGRTGTVLTAVLQD---HGT--LAEHDIYIAGR-FEMAKIARDLF 213 (232)
T ss_dssp SSCCTTCCSEESCHHHHHHHH---CSC--CTTCEEEEESC-HHHHHHHHHHH
T ss_pred cCCCCCcCCceeeHHHHHHHh---cCC--ccccEEEEECC-HHHHHHHHHHH
Confidence 98643 357887766543 111 25689999999 89999999887
|
| >1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=222.60 Aligned_cols=187 Identities=18% Similarity=0.217 Sum_probs=144.7
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~- 550 (714)
...+|||+.+.+|. ..+|+|||+|+|.. +.++|+|+. .+.|.+|+||+++.+|+ .+.+.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~---------~~~G~~s~~l~~l~~Gd------~v~v~~ 92 (248)
T 1fdr_A 30 PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVT---------VPDGKLSPRLAALKPGD------EVQVVS 92 (248)
T ss_dssp CCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEEC---------CTTCSSHHHHHTCCTTC------EEEEES
T ss_pred CcCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEE---------eCCCchhhHHHhCCCcC------EEEEec
Confidence 44678988765552 46799999999863 678887753 24699999999887765 57787
Q ss_pred EecCCccCCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcC-CCcE
Q 005109 551 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQ 628 (714)
Q Consensus 551 v~~~~F~lp~~~-~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g-~~~~ 628 (714)
.|.|.|.++.+. .++++|||+|||||||+++++++...+ ..++++|+||+|+.+ |++|.+||+++.++. ..++
T Consensus 93 gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 167 (248)
T 1fdr_A 93 EAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD----RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLR 167 (248)
T ss_dssp SCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT----TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEE
T ss_pred CCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC----CCCcEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEE
Confidence 788899987653 689999999999999999999875432 126899999999997 999999999998754 3568
Q ss_pred EEEEEecCCC---Ccccccchhhhch-HHHHhc-c-cCCcEEEEecCchhhHHHHHHHH-HHH
Q 005109 629 LIVAFSREGP---TKEYVQHKMMEKS-SDIWNM-L-SEGAYLYVCGDAKSMARDVHRTL-HTI 684 (714)
Q Consensus 629 l~~a~Sr~~~---~k~yVq~~l~e~~-~~l~~~-i-~~~~~iyvCGpa~~M~~~V~~~L-~~i 684 (714)
+++++|+++. .+++|++.+.+.. ...... . ..+..+|+||| ++|+++|++.| .+.
T Consensus 168 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~~ 229 (248)
T 1fdr_A 168 IQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKETR 229 (248)
T ss_dssp EEEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCC-HHHHHHHHHHHHHHc
Confidence 8999998754 3688888776542 222211 2 35789999999 89999999988 654
|
| >1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=227.10 Aligned_cols=194 Identities=16% Similarity=0.211 Sum_probs=143.6
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
..+|||+.+.+| ...+|+|||+|+|. +++.++|+|+.+...+..+....|.+|+||+++.+|+ .+.|.+|
T Consensus 47 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP 119 (275)
T 1umk_A 47 LPVGQHIYLSARIDGNLVVRPYTPISSDD-DKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGD------TIEFRGP 119 (275)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCSSCTT-CCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTC------EEEEEEE
T ss_pred CCCCcEEEEEEeeCCcEEEeccccCCccC-CCCeEEEEEEEeccCcccccCCCChhHHHHhcCCCCC------EEEEEcC
Confidence 357888865433 24689999999986 4578999887653333223335699999999887765 5778888
Q ss_pred cCCccC--------CCC--------CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHH
Q 005109 553 QSNFKL--------PAD--------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE 616 (714)
Q Consensus 553 ~~~F~l--------p~~--------~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dE 616 (714)
.|.|.+ +.+ ..+|+||||+|||||||++|++++.... ...++++||||+|+.+ |++|.+|
T Consensus 120 ~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~---~~~~~v~l~~~~r~~~-d~~~~~e 195 (275)
T 1umk_A 120 SGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDP---DDHTVCHLLFANQTEK-DILLRPE 195 (275)
T ss_dssp ECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCT---TCCCEEEEEEEESSGG-GCTTHHH
T ss_pred ccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCC---CCCcEEEEEEEcCCHH-HhhHHHH
Confidence 887743 321 3578999999999999999999987532 1237899999999987 9999999
Q ss_pred HHHHHHcCC-CcEEEEEEecCCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHH-HHHHHHHHH
Q 005109 617 LNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR-DVHRTLHTI 684 (714)
Q Consensus 617 L~~~~~~g~-~~~l~~a~Sr~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~-~V~~~L~~i 684 (714)
|+++.+... .+++++++||++. .++||++.+.+. .......++.||+||| ++|++ +|++.|.+.
T Consensus 196 l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~v~~~L~~~ 265 (275)
T 1umk_A 196 LEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHV 265 (275)
T ss_dssp HHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHH
T ss_pred HHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 999987654 5688899998643 367787654322 1111124789999999 89999 898888754
|
| >4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-24 Score=218.05 Aligned_cols=182 Identities=16% Similarity=0.291 Sum_probs=141.3
Q ss_pred CCChHHHHHHhcCCC-----cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceee
Q 005109 475 KPPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAP 548 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l-----~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~ 548 (714)
...+|||+.+.+|.. ++|+|||+|+|. .+.++|+|+.+ ..++...|.+|+||+ ++.+|+ .+.
T Consensus 33 ~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~~~i~vk~~----~~~~~~~G~~S~~l~~~l~~G~------~v~ 100 (243)
T 4eh1_A 33 DYQPGQYIGIEVTPEGSDYREIRQYSLSHASN--GREYRISVKRE----GVGSDNPGLVSHYLHNNVKVGD------SVK 100 (243)
T ss_dssp CCCTTCEEEEEECCSSCSSCEEEEEEBCSCCC--SSCEEEEEECT----TTTSSSCCHHHHHHHHHCCTTC------EEE
T ss_pred CcCCCCEEEEEEecCCCccccceeeEeccCCC--CCeEEEEEEEe----ecCCCCCCeehhHHHhcCCCCC------EEE
Confidence 345789987655532 469999999985 36788877532 112236699999997 576765 578
Q ss_pred EEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcE
Q 005109 549 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 628 (714)
Q Consensus 549 i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~ 628 (714)
|.+|.|.|.++ +..+|+||||+|||||||++|++++..... .+++|+||+|+.+ |++|.+||+++.+.+ .++
T Consensus 101 v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~-----~~v~l~~~~r~~~-~~~~~~el~~l~~~~-~~~ 172 (243)
T 4eh1_A 101 LYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK-----SGVTYLYACNSAK-EHTFAQETAQLIAQQ-GWM 172 (243)
T ss_dssp EEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC-----CSEEEEEEESSGG-GCTTHHHHHHHHHHH-TCE
T ss_pred EEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC-----CeEEEEEEeCChh-hhhHHHHHHHHHHhC-CeE
Confidence 88899999988 567899999999999999999999887542 2399999999997 999999999998877 668
Q ss_pred EEEEEecCCC---CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 629 LIVAFSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 629 l~~a~Sr~~~---~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+++++|++.. .+++++..+. .+-..+..||+||| ++|+++|++.|.+.
T Consensus 173 ~~~~~s~~~~~~~~~g~~~~~~~-------~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 223 (243)
T 4eh1_A 173 QQVWYRDESADDVLQGEMQLAEL-------ILPIEDGDFYLCGP-IGFMQYVVKQLLAL 223 (243)
T ss_dssp EEEEESSCCCTTCEESSCCCTTS-------CCCTTTCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred EEEEEccCCCcccccCCccHHHe-------eccCCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 9999998654 2456654433 12236789999999 89999999998765
|
| >1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-24 Score=228.75 Aligned_cols=181 Identities=23% Similarity=0.283 Sum_probs=146.2
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+. ...|.+|+||+ ++.+|+ .+.+.+|
T Consensus 138 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk~---------~~~G~~S~~L~~~l~~Gd------~v~v~gP 200 (338)
T 1krh_A 138 HFLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRN---------VPQGKMSEYLSVQAKAGD------KMSFTGP 200 (338)
T ss_dssp CCCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEEC---------CTTCHHHHHHHTTCCTTC------EEEEEEE
T ss_pred CcCCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEEE---------cCCCCchhhHhhccCCCC------EEEEECC
Confidence 34578988766665 5789999999986 5789988863 24699999995 676665 5788889
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++.+ .+|+||||+|||||||++|++++...+. .++++||||+|+.+ |++|.+||+++.+....++++++
T Consensus 201 ~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~ 274 (338)
T 1krh_A 201 FGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKGS----EHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTV 274 (338)
T ss_dssp ECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHCC----SSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEE
T ss_pred ccceEeCCC-CceEEEEEccccHhHHHHHHHHHHHcCC----CCeEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 999998765 4899999999999999999999887532 36899999999997 99999999999887777789999
Q ss_pred EecCCC---CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 633 FSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 633 ~Sr~~~---~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+|+++. .++||++.+.+. .+. ..+..+|+||| ++|+++|++.|.+.
T Consensus 275 ~s~~~~~~~~~g~v~~~l~~~--~~~---~~~~~vy~CGp-~~m~~~v~~~l~~~ 323 (338)
T 1krh_A 275 VAHAESQHERKGYVTGHIEYD--WLN---GGEVDVYLCGP-VPMVEAVRSWLDTQ 323 (338)
T ss_dssp ETTCCSSSSEESCSGGGCCGG--GGG---GGCSEEEEEEE-HHHHHHHHHHHHHH
T ss_pred EecCCCCCCccCccCHHHHHh--hcc---cCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 998654 367888877632 111 24678999999 89999999988653
|
| >3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-24 Score=201.95 Aligned_cols=142 Identities=24% Similarity=0.294 Sum_probs=123.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhc-CCCeEEEEEeCCCC--CCCCchHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK-KENIVFFFLATYGD--GEPTDNAA 180 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~-~~~~vif~~sTyG~--G~~pdna~ 180 (714)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+++.+ ++. +++.+||++||||+ |++|+++.
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~------~l~~~~d~ii~g~pty~~~~G~~p~~~~ 72 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGG--HEVTLLNAADASAE------NLADGYDAVLFGCSAWGMEDLEMQDDFL 72 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTT--CEEEEEETTTBCCT------TTTTTCSEEEEEECEECSSSCEECHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCC--CeEEEEehhhCCHh------HhcccCCEEEEEecccCCCCCCCcHHHH
Confidence 578999999999999999999999998875 56889999988753 467 89999999999998 99999999
Q ss_pred HHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCC-chhhHHHHHHHHHH
Q 005109 181 RFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC-IEDDFSAWRELVWP 257 (714)
Q Consensus 181 ~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~-~e~~f~~W~~~l~~ 257 (714)
.|+++|. ...+++++++|||+||++|.+||.+++.++++|+++|++++.+....+...+ ..+.+.+|.++|+.
T Consensus 73 ~fl~~l~----~~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 146 (148)
T 3f6r_A 73 SLFEEFD----RIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKMEGDASNDPEAVASFAEDVLK 146 (148)
T ss_dssp HHHTTGG----GTCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEEESSGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhh----ccCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEeecCcchHHHHHHHHHHHHHh
Confidence 9999996 3458999999999999999999999999999999999999988776654211 66788889888765
|
| >1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=230.79 Aligned_cols=179 Identities=15% Similarity=0.235 Sum_probs=140.5
Q ss_pred CChHHHHHHhcCC-----CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeE
Q 005109 476 PPLGVFFAAIVPR-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 549 (714)
Q Consensus 476 ~p~~~~l~~i~p~-----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i 549 (714)
..+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+. ...|.+|+||++ +.+|+ .+.+
T Consensus 183 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~---------~~~G~~S~~L~~~l~~Gd------~v~v 245 (396)
T 1gvh_A 183 YRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKR---------EEGGQVSNWLHNHANVGD------VVKL 245 (396)
T ss_dssp CCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEEC---------CTTCHHHHHHHHTCCTTC------EEEE
T ss_pred CCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEE---------cCCCcchHHHHhcCCCCC------EEEE
Confidence 3568888655442 3589999999986 4678888763 235999999997 76665 5788
Q ss_pred EEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEE
Q 005109 550 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 629 (714)
Q Consensus 550 ~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l 629 (714)
..|.|.|.++.+..+|+||||+|||||||++|++++...+. .++++|+||+|+.+ |++|.+||+++.+.+..+++
T Consensus 246 ~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 320 (396)
T 1gvh_A 246 VAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGH----TAQVNWFHAAENGD-VHAFADEVKELGQSLPRFTA 320 (396)
T ss_dssp EEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEEE
T ss_pred EcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCC----CCcEEEEEEeCCHH-HhhhHHHHHHHHHHCCCeEE
Confidence 89999999986667899999999999999999999887532 26899999999998 99999999999988777889
Q ss_pred EEEEecCCCC---------cccccchhhhchHHHHhc-ccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 630 IVAFSREGPT---------KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 630 ~~a~Sr~~~~---------k~yVq~~l~e~~~~l~~~-i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
++++|+++.. +++++..+ +.+. ...++.+|+||| ++|+++|++.|.+
T Consensus 321 ~~~~s~~~~~~~~~~~~~~~G~~~~~~------l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~ 377 (396)
T 1gvh_A 321 HTWYRQPSEADRAKGQFDSEGLMDLSK------LEGAFSDPTMQFYLCGP-VGFMQFTAKQLVD 377 (396)
T ss_dssp EEEESSCCHHHHHHTCCSEESSCCGGG------SSSCCCCTTCEEEEESC-HHHHHHHHHHHHH
T ss_pred EEEECCCCccccccCccCccCcCCHHH------HhhccCCCCCEEEEeCC-HHHHHHHHHHHHH
Confidence 9999986531 23443321 1111 113789999999 8999999998865
|
| >4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=226.97 Aligned_cols=204 Identities=17% Similarity=0.193 Sum_probs=149.9
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005109 475 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~- 550 (714)
...+|||+.+.+| ....|+|||+|+|. .+.++++++. ...|.+|+||+++.+|+ .+.+.
T Consensus 46 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~~---------~~~G~~s~~l~~l~~Gd------~v~v~~ 108 (271)
T 4fk8_A 46 RFNNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSIK---------VQNGPLTSRLQHLKVGD------PVLIGK 108 (271)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEEC---------CTTCTTHHHHTTCCTTC------EEEEES
T ss_pred CcCCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEEE---------ECCCchhhHHhcCCCCC------EEEEec
Confidence 3467898876555 23579999999985 3578877653 24699999999887765 57888
Q ss_pred EecCCccCCC-CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC----
Q 005109 551 VRQSNFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA---- 625 (714)
Q Consensus 551 v~~~~F~lp~-~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~---- 625 (714)
.|.|.|.++. +..++++|||+|||||||+++++++...+.. ++++|+||+|+.+ |++|.+||+++.++..
T Consensus 109 gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~----~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 183 (271)
T 4fk8_A 109 KPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERF----DKVVLTHTCRLKG-ELAYMDYIKHDLPGHEYLGD 183 (271)
T ss_dssp CCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHHC----SEEEEEECCCSHH-HHHHHHHHHTCCTTCTTHHH
T ss_pred CCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCCC----CCEEEEEecCCHH-HHhHHHHHHHHHHhCccccc
Confidence 8889998875 3568999999999999999999998765432 6899999999997 9999999999876654
Q ss_pred ----CcEEEEEEecCCC-CcccccchhhhchHHHHh-----cccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHH
Q 005109 626 ----LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWN-----MLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 695 (714)
Q Consensus 626 ----~~~l~~a~Sr~~~-~k~yVq~~l~e~~~~l~~-----~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~ 695 (714)
.+++++++|++.. .++++++.+.+.. .+.. ...++..+|+||| ++|+++|++.|.+.......
T Consensus 184 ~~~~~~~~~~~~s~~~~~~~G~v~~~~~~~~-l~~~~~~~~~~~~~~~v~vCGp-~~m~~~v~~~l~~~gv~~~~----- 256 (271)
T 4fk8_A 184 VIREKLVYYPTVTREEFENEGRITDLIASGK-LFTDLDMPPFSPEQDRVMLCGS-TAMLKDTTELLKKAGLVEGK----- 256 (271)
T ss_dssp HHHHHEEEEECC-------CCHHHHHHHHSH-HHHHTTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBCB-----
T ss_pred cccceEEEEEEecCCccccccccChHHhcch-hhhhcccccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCchhh-----
Confidence 3578888888753 5688887765431 1111 1235789999999 89999999998765433322
Q ss_pred HHHHHHHHHHCCCeEEecC
Q 005109 696 AESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 696 a~~~~~~l~~~gRy~~DvW 714 (714)
+...|+|..|.|
T Consensus 257 -------i~~~~~~~~E~y 268 (271)
T 4fk8_A 257 -------NSAPGHYVIERA 268 (271)
T ss_dssp -------TTBCBSEEEEES
T ss_pred -------cCCCCcEEEEEe
Confidence 233677777754
|
| >2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-23 Score=220.18 Aligned_cols=185 Identities=17% Similarity=0.231 Sum_probs=142.6
Q ss_pred CChHHHHHHhcC----CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005109 476 PPLGVFFAAIVP----RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 550 (714)
Q Consensus 476 ~p~~~~l~~i~p----~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~- 550 (714)
..+|||+.+.+| ...+|+|||+|+|. .+.++|+|+. .+.|.+|+||+++.+|+ .+.+.
T Consensus 44 ~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~--~~~~~l~v~~---------~~~G~~s~~l~~l~~Gd------~v~v~~ 106 (272)
T 2bgi_A 44 FRSGEFVMIGLLDDNGKPIMRAYSIASPAW--DEELEFYSIK---------VPDGPLTSRLQHIKVGE------QIILRP 106 (272)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEEECCSCTT--CSEEEEEEEC---------CTTCTTHHHHTTCCTTC------EEEEEE
T ss_pred cCCCCEEEEEeccCCCCeeeeeeeeccCCC--CCeEEEEEEE---------ccCCCchhHHHhCCCCC------EEEEee
Confidence 457899876555 23579999999986 2788887753 24699999999887765 57787
Q ss_pred EecCCccCCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHH-HHHH-----c
Q 005109 551 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S 623 (714)
Q Consensus 551 v~~~~F~lp~~~-~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~-~~~~-----~ 623 (714)
.+.|.|.++... ..+++|||+|||||||++|++++...+ ...+++||||+|+.+ |++|.+||+ ++++ +
T Consensus 107 gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~ 181 (272)
T 2bgi_A 107 KPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE----KFDEVIMMHACRTVA-ELEYGRQLVEALQEDPLIGE 181 (272)
T ss_dssp EEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT----SCSEEEEEEEESSSG-GGHHHHHHHHHHHHCTTTTT
T ss_pred CCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhcchhhc
Confidence 688999887543 689999999999999999999875432 126899999999997 999999999 9887 3
Q ss_pred --CCCcEEEEEEecCCC-Ccccccchhhhch-HHHHhc--c-cCCcEEEEecCchhhHHHHHHHHHH
Q 005109 624 --GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 624 --g~~~~l~~a~Sr~~~-~k~yVq~~l~e~~-~~l~~~--i-~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
...+++++++||+.. .++||++.+.+.. .....+ + ..++.+|+||| ++|+++|++.|.+
T Consensus 182 ~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~ 247 (272)
T 2bgi_A 182 LVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGS-LAFNVDVMKVLES 247 (272)
T ss_dssp TSTTTEEEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHT
T ss_pred ccCCcEEEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECC-HHHHHHHHHHHHH
Confidence 245688899998743 4788988776532 111111 1 25789999999 8999999988864
|
| >4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-23 Score=227.50 Aligned_cols=182 Identities=14% Similarity=0.274 Sum_probs=142.1
Q ss_pred ChHHHHHHhc--C--C---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceee
Q 005109 477 PLGVFFAAIV--P--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAP 548 (714)
Q Consensus 477 p~~~~l~~i~--p--~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~ 548 (714)
.+|||+.+.+ | . .++|+|||+|+|. ++.++|+|+... ..+..+.|.+|+||+ ++.+|+ .+.
T Consensus 185 ~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~---~~~~~~~G~~S~~L~~~l~~Gd------~v~ 253 (399)
T 4g1v_A 185 TPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEA---ARENFPAGLVSEYLHKDAKVGD------EIK 253 (399)
T ss_dssp CTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCC---CBTTBCCCHHHHHHHHTCCTTC------EEE
T ss_pred CCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEecc---CCCCCCCCEehhHHHhCCCCCC------EEE
Confidence 4688876543 3 2 3579999999986 467888775321 111235799999997 676665 578
Q ss_pred EEEecCCccCCCC----CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcC
Q 005109 549 IFVRQSNFKLPAD----AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 624 (714)
Q Consensus 549 i~v~~~~F~lp~~----~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g 624 (714)
+..|.|.|.++.+ ..+|+||||+|||||||++|++++...+. .++++||||+|+.+ |++|.+||+++.+..
T Consensus 254 v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~ 328 (399)
T 4g1v_A 254 LSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNP----NRPIYWIQSSYDEK-TQAFKKHVDELLAEC 328 (399)
T ss_dssp EEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCT----TSCEEEEEEESSST-TSTTHHHHHHHHTTC
T ss_pred EEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCC----CCCEEEEEecCCHH-HhhhHHHHHHHHHhC
Confidence 8899999999876 57899999999999999999999987542 26899999999987 999999999999888
Q ss_pred CCcEEEEEEecCCCCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 625 ALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 625 ~~~~l~~a~Sr~~~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
..+++++++|+++ ++++.. .+.+.+..++.||+||| ++|+++|++.|.+.
T Consensus 329 ~~~~~~~~~s~~~---g~~~~~------~l~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~ 378 (399)
T 4g1v_A 329 ANVDKIIVHTDTE---PLINAA------FLKEKSPAHADVYTCGS-LAFMQAMIGHLKEL 378 (399)
T ss_dssp SSEEEEEEETTTS---CCCCHH------HHHHHSCSSCEEEEEEC-HHHHHHHHHHHHHT
T ss_pred CCcEEEEEEeCCC---CcccHH------HHHhhCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 7789999999864 455432 22233444899999999 89999999988654
|
| >2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=219.01 Aligned_cols=194 Identities=14% Similarity=0.234 Sum_probs=140.1
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCcc-ccCccchhhcccCCCCCCCCCceeeEE
Q 005109 475 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNSLPMEKSNDCSWAPIF 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~-~~G~~S~~L~~~~~g~~~~~~~~v~i~ 550 (714)
...+|||+.+.+| ...+|+|||+|+|. .++.++|+|+++. .+..++. ..|.+|+||.++.+|+ .+.|.
T Consensus 42 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~-~~~~~~~~~~G~~s~~l~~l~~Gd------~v~v~ 113 (270)
T 2cnd_A 42 GLPIGKHIFVCATIEGKLCMRAYTPTSMVD-EIGHFDLLVKVYF-KNEHPKFPNGGLMTQYLDSLPVGS------YIDVK 113 (270)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEECCC-SSCBTTBTTCCHHHHHHHHCCTTC------EEEEE
T ss_pred CCCCCCEEEEEeeeCCcEEEEeeccCCCcc-CCCEEEEEEEEec-cCcccccCCCCchhhHHhcCCCCC------EEEEE
Confidence 3467888854333 24679999999986 3578999887542 1111121 3599999999887765 57788
Q ss_pred EecCC--------ccCCC--CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHH
Q 005109 551 VRQSN--------FKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 620 (714)
Q Consensus 551 v~~~~--------F~lp~--~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~ 620 (714)
+|.|. |.++. +..+|+||||+|||||||++|++++..... ...++++||||+|+.+ |++|.+||+++
T Consensus 114 gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~--~~~~~v~l~~~~r~~~-d~~~~~el~~l 190 (270)
T 2cnd_A 114 GPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP--EDHTEMHLVYANRTED-DILLRDELDRW 190 (270)
T ss_dssp EEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT--TCCCEEEEEEEESCGG-GCTTHHHHHHH
T ss_pred CCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCC--CCCcEEEEEEEcCCHH-HcchHHHHHHH
Confidence 88775 66664 246899999999999999999999876421 1237899999999998 99999999999
Q ss_pred HHcCC-CcEEEEEEecC---CC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHH-HHHHHHH
Q 005109 621 VQSGA-LSQLIVAFSRE---GP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHT 683 (714)
Q Consensus 621 ~~~g~-~~~l~~a~Sr~---~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~-V~~~L~~ 683 (714)
+++.. .+++++++|++ +. .++||++.+.+. .......+..+|+||| ++|+++ +++.|.+
T Consensus 191 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~~~~~L~~ 258 (270)
T 2cnd_A 191 AAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACGP-PPMIQFAISPNLEK 258 (270)
T ss_dssp HHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHH---HSCCCSSSEEEEEECC-HHHHHTTTHHHHHT
T ss_pred HHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHH---hcCCCcCCEEEEEECC-HHHHHHHHHHHHHH
Confidence 87654 46788888873 21 367888764332 1111124578999999 899997 5777753
|
| >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-23 Score=218.41 Aligned_cols=186 Identities=16% Similarity=0.179 Sum_probs=141.1
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005109 475 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~- 550 (714)
...+|||+.+.+| ...+|+|||+|+|.. +.++|+++. .+.|.+|+||.++.+|+ .+.|.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~---------~~~G~~s~~l~~l~~Gd------~v~v~~ 92 (257)
T 2qdx_A 30 RFKTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIK---------VPDGPLTSRLQHLKEGD------ELMVSR 92 (257)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEEC---------CTTCTTHHHHTTCCTTC------EEEECS
T ss_pred ccCCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEE---------eCCCcchhHHHhCCCCC------EEEEec
Confidence 3467898865554 236799999999862 688887753 24699999999887765 46676
Q ss_pred EecCCccCCCCC-CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHH-HHHH-----c
Q 005109 551 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S 623 (714)
Q Consensus 551 v~~~~F~lp~~~-~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~-~~~~-----~ 623 (714)
.+.|.|.++... .+++||||+|||||||+++++++...+.. .+++|+||+|+.+ |++|.+||+ ++.+ +
T Consensus 93 gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~----~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~ 167 (257)
T 2qdx_A 93 KPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERY----EKVILVHGVRWVS-ELAYADFITKVLPEHEYFGD 167 (257)
T ss_dssp CCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHHC----SEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHH
T ss_pred CCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCCC----CeEEEEEEcCCHH-HhHhHHHHHHHHHhchhhhc
Confidence 577889887543 68999999999999999999988765422 6899999999997 999999999 8765 1
Q ss_pred --CCCcEEEEEEecCCC-Ccccccchhhhch-HHHHhc--c-cCCcEEEEecCchhhHHHHHHHHHH
Q 005109 624 --GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 624 --g~~~~l~~a~Sr~~~-~k~yVq~~l~e~~-~~l~~~--i-~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
...+++++++|++.. .+++|++.+.+.. .....+ + ..++.+|+||| ++|+++|++.|.+
T Consensus 168 ~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~ 233 (257)
T 2qdx_A 168 QVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGS-PSMLEETSAVLDS 233 (257)
T ss_dssp HHHHHEEEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHH
T ss_pred cCCCcEEEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECC-HHHHHHHHHHHHH
Confidence 134578889998743 4788988776532 111111 1 25789999999 8999999998864
|
| >1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-23 Score=228.08 Aligned_cols=188 Identities=22% Similarity=0.309 Sum_probs=140.6
Q ss_pred CChHHHHHHhcC--C---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeE
Q 005109 476 PPLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPI 549 (714)
Q Consensus 476 ~p~~~~l~~i~p--~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i 549 (714)
..+|||+.+.+| . ..+|+|||+|+|. .+.++|+|+.+ +.++.+.|.+|+||++ +.+|+ .+.|
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~----~~~~~~~G~~S~~L~~~l~~Gd------~v~v 252 (403)
T 1cqx_A 185 FEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKRE----GGGPQPPGYVSNLLHDHVNVGD------QVKL 252 (403)
T ss_dssp CCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECC----CBTTBCCCHHHHHHHHHCCTTC------EEEE
T ss_pred CCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEEC----CCCCCCCCeehHHHhhCCCCCC------EEEE
Confidence 356888865444 2 3579999999986 47899887643 1112346999999995 77765 5778
Q ss_pred EEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEE
Q 005109 550 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 629 (714)
Q Consensus 550 ~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l 629 (714)
..|.|.|.++.+..+|+||||+|||||||++|++++.. . ..++++||||+|+.+ |++|++||+++++....+++
T Consensus 253 ~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 326 (403)
T 1cqx_A 253 AAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A----PPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLDL 326 (403)
T ss_dssp CCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S----SCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEEE
T ss_pred ecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C----CCCcEEEEEEeCChh-hCcHHHHHHHHHHhCCCcEE
Confidence 88889999976667899999999999999999999865 2 127899999999998 99999999999987777789
Q ss_pred EEEEecCCCCc----ccccc-hhhhchHHHHhc-ccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 630 IVAFSREGPTK----EYVQH-KMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 630 ~~a~Sr~~~~k----~yVq~-~l~e~~~~l~~~-i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
++++|+++... .|.++ ++... .+.+. ...++.+|+||| ++|+++|++.|.+.
T Consensus 327 ~~~~s~~~~~~~~~~~~~~~G~i~~~--~l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~ 384 (403)
T 1cqx_A 327 FVFYDQPLPEDVQGRDYDYPGLVDVK--QIEKSILLPDADYYICGP-IPFMRMQHDALKNL 384 (403)
T ss_dssp EEEESSCCTTCCBTTTBSEESSCCGG--GSHHHHCCTTCEEEEESS-HHHHHHHHHHHHHT
T ss_pred EEEECCCCcccccccccCcCCCcCHH--HHhhccCCCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 99999865422 13222 22211 12221 113789999999 89999999988653
|
| >1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-23 Score=216.06 Aligned_cols=171 Identities=22% Similarity=0.254 Sum_probs=133.9
Q ss_pred CChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEe
Q 005109 476 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 476 ~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~ 552 (714)
..+|||+.+.+|. ..+|+|||+|+|. ..+.++|+|+. ...|.+|+||+++.+|+ .+.+..|
T Consensus 34 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~---------~~~G~~S~~l~~l~~Gd------~v~v~gP 97 (262)
T 1ep3_B 34 DLPGQFLHLAVPNGAMLLRRPISISSWDK-RAKTCTILYRI---------GDETTGTYKLSKLESGA------KVDVMGP 97 (262)
T ss_dssp CSTTCEEEECCSCTTCCSCEEEECCEEET-TTTEEEEEEEC---------CCTTSHHHHHHTCCTTC------EEEEEEE
T ss_pred CCCCceEEEEcCCCCceeeEEEEeeeecC-CCCEEEEEEEE---------ecCCchHHHHhcCCCCC------EEEEEcc
Confidence 3578888765564 6789999999986 35789988763 23588999999887765 5788888
Q ss_pred cCC-ccCCCC-CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEE
Q 005109 553 QSN-FKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 630 (714)
Q Consensus 553 ~~~-F~lp~~-~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~ 630 (714)
.|+ |.++.+ ..+|++|||+|||||||++|++++...+ .+++||||+|+++ |++|.+||+++... +++
T Consensus 98 ~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~----~~~ 166 (262)
T 1ep3_B 98 LGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG------CQMTILLGFASEN-VKILENEFSNLKNV----TLK 166 (262)
T ss_dssp ESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT------CEEEEEEEESSGG-GCCCHHHHHTSTTE----EEE
T ss_pred cCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHhhhccC----cEE
Confidence 887 998865 4689999999999999999999987642 6799999999998 99999999886532 444
Q ss_pred EEEecCCC--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 631 VAFSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 631 ~a~Sr~~~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
++ ++++. .++||++.+.+. +.++..+|+||| ++|+++|++ |.+
T Consensus 167 ~~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp-~~m~~~v~~-l~~ 211 (262)
T 1ep3_B 167 IA-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGA-PAMLKAVAK-KYD 211 (262)
T ss_dssp EE-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESC-HHHHHHHHH-HTT
T ss_pred EE-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECC-HHHHHHHHH-HHh
Confidence 43 45432 467888755442 334689999999 899999988 753
|
| >1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-22 Score=186.65 Aligned_cols=141 Identities=24% Similarity=0.274 Sum_probs=122.2
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcC-CCeEEEEEeCCCCCC--CCchHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKK-ENIVFFFLATYGDGE--PTDNAAR 181 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~-~~~vif~~sTyG~G~--~pdna~~ 181 (714)
|+++|+|+|+||||+.+|+.|++.+.+.+ ..++++++++++. .++.+ ++.+||++||||.|. +|++++.
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g--~~v~~~~~~~~~~------~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~ 72 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAG--YEVDSRDAASVEA------GGLFEGFDLVLLGCSTWGDDSIELQDDFIP 72 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHT--CEEEEEEGGGCCS------TTTTTTCSEEEEEECEECSSSCEECTTTHH
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcC--CeeEEEehhhCCH------HHhcCcCCEEEEEeCCCCCCCcCCChhHHH
Confidence 47999999999999999999999998775 5678889988764 34777 999999999999999 9999999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCC-chhhHHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC-IEDDFSAWRELVWP 257 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~-~e~~f~~W~~~l~~ 257 (714)
|++++. ...+++++++|||+||++|.+||.+.+.+++.|..+|++.+.+....|...+ ..+.+.+|.+++++
T Consensus 73 fl~~l~----~~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 73 LFDSLE----ETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRG 145 (147)
T ss_dssp HHHTGG----GSCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHT
T ss_pred HHHHHH----hcccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccccccCchhHHHHHHHHHHHHHh
Confidence 999996 3358899999999999999889999999999999999999987666654322 56789999988764
|
| >2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-22 Score=212.69 Aligned_cols=174 Identities=15% Similarity=0.197 Sum_probs=133.7
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCc-cchhhc-ccCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL-CSTWMK-NSLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~-~S~~L~-~~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|...+|+|||+|+|. ..+.++|+|+. ...|. +|+||+ ++.+|+ .+.|..|
T Consensus 38 ~~~pGQ~v~l~~~~g~~R~ySi~s~~~-~~~~l~i~Vk~---------~~~G~g~S~~L~~~l~~Gd------~v~v~gP 101 (321)
T 2pia_A 38 PFEAGANLTVAVPNGSRRTYSLCNDSQ-ERNRYVIAVKR---------DSNGRGGSISFIDDTSEGD------AVEVSLP 101 (321)
T ss_dssp CCCTTCEEEEECTTSCEEEEECCSCTT-CCSEEEEEEEC---------CTTSCSHHHHHHHSCCTTC------EEEECCC
T ss_pred CCCCCCEEEEECCCCCcEEEEeCCCCC-CCCeEEEEEEE---------ecCCcchhHHHHhcCCCCC------EEEEeCC
Confidence 346799987666666899999999986 34788888763 34587 899999 677765 5778888
Q ss_pred cCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEE
Q 005109 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 632 (714)
Q Consensus 553 ~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a 632 (714)
.|.|.++.+ .+++||||+|||||||++|++++...+ . .+++|+||+|+.+ |++|.+||+++. ... ++.+.
T Consensus 102 ~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~----~-~~v~l~~~~r~~~-~~~~~~el~~l~-~~~--~~~~~ 171 (321)
T 2pia_A 102 RNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG----L-RSFRLYYLTRDPE-GTAFFDELTSDE-WRS--DVKIH 171 (321)
T ss_dssp BCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC----S-SEEEEEEEESCGG-GCTTHHHHHSTT-TTT--TEEEE
T ss_pred ccccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC----C-CcEEEEEEECChh-hhHHHHHHhcCc-cCC--eEEEE
Confidence 899999865 678999999999999999999987643 1 5799999999997 999999999875 232 34555
Q ss_pred EecCCC-CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 633 FSREGP-TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 633 ~Sr~~~-~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
++++.. .+.++++.+.+ ...+..+|+||| ++|+++|++.|.+
T Consensus 172 ~~~~~~~g~~~~~~ll~~--------~~~~~~vyvCGP-~~m~~~v~~~l~~ 214 (321)
T 2pia_A 172 HDHGDPTKAFDFWSVFEK--------SKPAQHVYCCGP-QALMDTVRDMTGH 214 (321)
T ss_dssp ECTTCTTSCCCHHHHHSS--------CCTTEEEEEESC-HHHHHHHHHHTTT
T ss_pred ECCCcccCccCHHHHhcc--------cCCCCEEEEECC-HHHHHHHHHHHHh
Confidence 666432 23344433322 235789999999 8999999998876
|
| >2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=192.65 Aligned_cols=146 Identities=22% Similarity=0.387 Sum_probs=122.3
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCC-------
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT------- 176 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p------- 176 (714)
|++++|+|+|+||||+.+|+.|++.+... ..++++++++++. .++.+++.+||++||||.|++|
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~~---~~v~~~~~~~~~~------~~l~~~d~ii~g~pty~~G~~pg~~~~~~ 71 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDDE---VMAKPLNVNRADV------ADFMAYDFLILGTPTLGDGQLPGLSANAA 71 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCTT---TBCCCEEGGGCCH------HHHHHCSEEEEEEECBTTTBCSSGGGTCS
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhccc---CceEEEEcccCCH------HHHhhCCeEEEEEeeCCCCCCCccccccc
Confidence 56899999999999999999999988642 3456777777653 4577899999999999999999
Q ss_pred -chHHHHHHHHHhccCCCccCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc------------------
Q 005109 177 -DNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV------------------ 235 (714)
Q Consensus 177 -dna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~~~~~------------------ 235 (714)
++++.|+++|. ...+++++++|||+||+. | ++||.+.+.+++.|.++|++.+.+.
T Consensus 72 ~~~~~~f~~~l~----~~~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~ 147 (182)
T 2wc1_A 72 SESWEEFLPRIA----DQDFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEF 147 (182)
T ss_dssp SCCHHHHGGGGT----TCCCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTEE
T ss_pred hhHHHHHHHHhh----hccCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCce
Confidence 99999999986 456899999999999998 8 5899999999999999999988763
Q ss_pred -ccccC-C-C--CchhhHHHHHHHHHHHHHhh
Q 005109 236 -GLGDD-D-Q--CIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 236 -g~gD~-~-~--~~e~~f~~W~~~l~~~L~~~ 262 (714)
|++.+ + + ..+++++.|.++|+++|...
T Consensus 148 ~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~~~ 179 (182)
T 2wc1_A 148 LGLALDQDNQAALTPERLKGWLSLIAADFGLV 179 (182)
T ss_dssp SSEEECTTTCGGGHHHHHHHHHHHTHHHHTCC
T ss_pred eeeeccCCCCccccHHHHHHHHHHHHHHHhcc
Confidence 55423 2 2 25888999999999988654
|
| >1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-21 Score=189.67 Aligned_cols=143 Identities=23% Similarity=0.403 Sum_probs=119.2
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCC--------
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-------- 176 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p-------- 176 (714)
++++|+|+|+||||+.+|+.|++.+.. + ..++++++++.+. .++.+++.+||++||||+|++|
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~-~--~~v~~~~~~~~~~------~~l~~~d~iilg~pt~~~G~~pg~~~~~~~ 71 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD-E--TMSDALNVNRVSA------EDFAQYQFLILGTPTLGEGELPGLSSDAEN 71 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT-T--TBCCCEEGGGCCH------HHHHTCSEEEEEEECBTTTBCSSGGGTCSS
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC-C--CceEEEEhhhCCH------HHHhcCCEEEEEeccCCCCcCCcccccccc
Confidence 478999999999999999999998854 2 3456778877653 4577899999999999999999
Q ss_pred chHHHHHHHHHhccCCCccCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc-------------------
Q 005109 177 DNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV------------------- 235 (714)
Q Consensus 177 dna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~~~~~------------------- 235 (714)
+++..|+++|. ...++++++++||+||+. | ++||.+++.+++.|.++|++.+.+.
T Consensus 72 ~~~~~fl~~l~----~~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f~ 147 (179)
T 1yob_A 72 ESWEEFLPKIE----GLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFV 147 (179)
T ss_dssp CCHHHHHHHHT----TCCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBS
T ss_pred hHHHHHHHHhh----hcccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCcee
Confidence 99999999996 456899999999999998 9 4799999999999999999988653
Q ss_pred cc-ccCC-C--CchhhHHHHHHHHHHHHH
Q 005109 236 GL-GDDD-Q--CIEDDFSAWRELVWPELD 260 (714)
Q Consensus 236 g~-gD~~-~--~~e~~f~~W~~~l~~~L~ 260 (714)
|+ .|.+ + ..+++++.|.++++++|.
T Consensus 148 gl~~d~~~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 148 GLALDLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp SEEECTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred ccccCCCCCCcccHHHHHHHHHHHHHHHh
Confidence 43 2322 2 368899999999987664
|
| >2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=183.82 Aligned_cols=140 Identities=26% Similarity=0.418 Sum_probs=117.0
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccc-cccchHHHHhhcCCCeEEEEEeCCCCCCC----CchHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEP----TDNAA 180 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~vif~~sTyG~G~~----pdna~ 180 (714)
+++|+|+|+||||+.+|+.|++.+... .+++++++++ +. .++.+++.+||++||||+|++ |+++.
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~----~~~~~~~~~~~~~------~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~ 70 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK----ADAPIDVDDVTDP------QALKDYDLLFLGAPTWNTGADTERSGTSWD 70 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG----BCCCEEGGGCSCG------GGGGGCSEEEEEEECCSTTCSSCCSCSTHH
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC----CcEEEehhhcCCh------hHHccCCEEEEEEeecCCCCcCccCcHHHH
Confidence 589999999999999999999999753 3567778776 43 357789999999999999999 99999
Q ss_pred HHH-HHHHhccCCCccCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc-------------------cc-
Q 005109 181 RFY-KWFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV-------------------GL- 237 (714)
Q Consensus 181 ~F~-~~L~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~~~~~-------------------g~- 237 (714)
.|+ ++|. ...+++++++|||+||+. | ++||.+++.+++.|.++|++.+.+. |+
T Consensus 71 ~fl~~~l~----~~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l~ 146 (173)
T 2fcr_A 71 EFLYDKLP----EVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLP 146 (173)
T ss_dssp HHHHHTGG----GCCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSEE
T ss_pred HHHHhhcc----ccccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeeeee
Confidence 999 8885 456889999999999999 8 6999999999999999999988652 22
Q ss_pred -ccC--CCCchhhHHHHHHHHHHHH
Q 005109 238 -GDD--DQCIEDDFSAWRELVWPEL 259 (714)
Q Consensus 238 -gD~--~~~~e~~f~~W~~~l~~~L 259 (714)
+.+ +...++.++.|.+++++.|
T Consensus 147 ~~~~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 147 LDMVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp EETTTCSSCHHHHHHHHHHHHHHHH
T ss_pred ecCCCCccccHHHHHHHHHHHHHHh
Confidence 222 2246788999999998776
|
| >1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-21 Score=185.19 Aligned_cols=143 Identities=25% Similarity=0.380 Sum_probs=119.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
|+++|+|+|+||||+++|+.|++.+... .++++++.+... .++.+++++||++||||.|++|+++..|++
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~----~v~i~~~~~~~~------~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~ 70 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKD----VADVHDIAKSSK------EDLEAYDILLLGIPTWYYGEAQCDWDDFFP 70 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEEGGGCCH------HHHHTCSEEEEECCEETTTEECHHHHHHHH
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccC----ceEEEEcccCCh------hHhhhCCEEEEEEeecCCCcChHHHHHHHh
Confidence 5799999999999999999999999653 367888877653 457789999999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCc-h-hHHHHHHHHHHHHHHHcCCcccccc--------------------cc-cc-C
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV--------------------GL-GD-D 240 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~~~~~--------------------g~-gD-~ 240 (714)
+|. ...+++++++|||+||+. | ++||.+.+.+++.|.+.|++.+... |+ .| +
T Consensus 71 ~l~----~~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~~ 146 (175)
T 1ag9_A 71 TLE----EIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDED 146 (175)
T ss_dssp HHT----TCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTT
T ss_pred hhh----hcccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCCC
Confidence 996 446899999999999986 8 7999999999999999999987641 11 12 1
Q ss_pred CC--CchhhHHHHHHHHHHHHHh
Q 005109 241 DQ--CIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 241 ~~--~~e~~f~~W~~~l~~~L~~ 261 (714)
++ ..+++++.|.++|++.|..
T Consensus 147 ~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 147 RQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CcccccHHHHHHHHHHHHHHhhh
Confidence 22 2567899999999998864
|
| >2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-21 Score=184.92 Aligned_cols=137 Identities=26% Similarity=0.366 Sum_probs=112.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++++|+|+|+||||+++|+.|++.+ + . ++++++++++. .++.+++.+||++||||.|++|+++..|+
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l---g--~-~~~~~~~~~~~------~~l~~~d~ii~g~pt~~~g~~p~~~~~f~ 68 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI---G--N-AEVVDVAKASK------EQFNSFTKVILVAPTAGAGDLQTDWEDFL 68 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH---C--S-EEEEEGGGCCH------HHHTTCSEEEEEEEEETTTEECHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc---C--C-cEEEecccCCH------hHHhhCCEEEEEECCcCCCcCcHHHHHHH
Confidence 46899999999999999999999998 3 3 68888887764 45778999999999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCc-hh-HHHHHHHHHHHHHHHcCCcccccc-------------------ccccC-C
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GLGDD-D 241 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~~~~~-------------------g~gD~-~ 241 (714)
++|. ...|++++|+|||+||+. |. +||.+++.++++|.+ ++++.+. ++..+ +
T Consensus 69 ~~l~----~~~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~ 142 (164)
T 2bmv_A 69 GTLE----ASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDED 142 (164)
T ss_dssp TTCC----THHHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECTT
T ss_pred HHHh----hhhcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCCC
Confidence 9985 345889999999999996 97 599999999999987 7776653 33222 1
Q ss_pred ---CCchhhHHHHHHHHHHH
Q 005109 242 ---QCIEDDFSAWRELVWPE 258 (714)
Q Consensus 242 ---~~~e~~f~~W~~~l~~~ 258 (714)
...++.+++|.+++++.
T Consensus 143 ~~~~~~~~~~~~w~~~l~~~ 162 (164)
T 2bmv_A 143 NQDDLTDERISKWVEQVKGS 162 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTTT
T ss_pred CccccCHHHHHHHHHHHHHh
Confidence 12477899999988654
|
| >1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-20 Score=178.43 Aligned_cols=142 Identities=22% Similarity=0.379 Sum_probs=119.8
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
++++|+|+|+||||+++|+.|++.+... .++++++++++. .++.+++.+||++||||.|.+|+++..|++
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~----~v~~~~~~~~~~------~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~ 71 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND----VVTLHDVSQAEV------TDLNDYQYLIIGCPTLNIGELQSDWEGLYS 71 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEETTTCCG------GGGGGCSEEEEEEEEETTTEECHHHHHHHT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC----CcEEEEcccCCH------HHHhhCCEEEEEEeeCCCCcCCHHHHHHHH
Confidence 5799999999999999999999999653 368889988764 357889999999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCc-hh-HHHHHHHHHHHHHHHcCCcccccc-------------------c--cccC-
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------G--LGDD- 240 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~~~~~-------------------g--~gD~- 240 (714)
+|. ...++++++++||+|++. |. +||.+.+.+++.|.++|++.+.+. + .+.+
T Consensus 72 ~l~----~~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~ 147 (169)
T 1obo_A 72 ELD----DVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDN 147 (169)
T ss_dssp TGG----GCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTT
T ss_pred Hhh----hcCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeEEeeCCC
Confidence 986 346899999999999984 96 899999999999999999987641 2 2222
Q ss_pred -CCCchhhHHHHHHHHHHHHH
Q 005109 241 -DQCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 241 -~~~~e~~f~~W~~~l~~~L~ 260 (714)
+...+++++.|.+++++.|.
T Consensus 148 ~~~~~~~~~~~w~~~~~~~l~ 168 (169)
T 1obo_A 148 QSDLTDDRIKSWVAQLKSEFG 168 (169)
T ss_dssp CGGGHHHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHHHHHhc
Confidence 22467789999999988773
|
| >1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-20 Score=177.62 Aligned_cols=142 Identities=23% Similarity=0.395 Sum_probs=119.1
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
++++|+|+|+||||+.+|+.|++.+... ..++++|+.+++. .++.+++.+||++|||+.|++|++++.|++
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~---~~v~~~~~~~~~~------~~l~~~d~ii~g~pty~~g~~p~~~~~f~~ 71 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE---SIVDLNDIANADA------SDLNAYDYLIIGCPTWNVGELQSDWEGIYD 71 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST---TTEEEEEGGGCCG------GGGGGCSEEEEECCEETTTEECHHHHHHGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc---cceEEEEhhhCCH------hHHhhCCEEEEEecccCCCcCCHHHHHHHH
Confidence 4799999999999999999999999653 2478889888764 357889999999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCc-hh-HHHHHHHHHHHHHHHcCCcccccc-------------------cc-ccCC-
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GL-GDDD- 241 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~~~~~-------------------g~-gD~~- 241 (714)
+|. ...++++++++||+||+. |. +||.+.+.+++.|.++|++.+... |+ .|.+
T Consensus 72 ~l~----~~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl~~~~~~ 147 (169)
T 1czn_A 72 DLD----SVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDN 147 (169)
T ss_dssp GGG----GSCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTT
T ss_pred Hhh----hhccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeeeeecCCC
Confidence 996 346899999999999996 96 899999999999999999987531 22 1222
Q ss_pred --CCchhhHHHHHHHHHHHH
Q 005109 242 --QCIEDDFSAWRELVWPEL 259 (714)
Q Consensus 242 --~~~e~~f~~W~~~l~~~L 259 (714)
...++++..|.+++++.|
T Consensus 148 ~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 148 QPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp CGGGHHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHHHHHh
Confidence 246788999999998766
|
| >5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.2e-18 Score=156.97 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=100.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCc-hHHHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAARFYKW 185 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pd-na~~F~~~ 185 (714)
|+|+|+|+||||+++|+.|++.+.+.+ ..++++|+.+++. .++.+++.+||++|||+.|.+|+ ++..|+++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~ 72 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESG--KDVNTINVSDVNI------DELLNEDILILGCSAMTDEVLEESEFEPFIEE 72 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTT--CCCEEEEGGGCCH------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEEhhhCCH------HHHhhCCEEEEEcCccCCCCCChHHHHHHHHH
Confidence 579999999999999999999998876 5678999988774 45789999999999999999997 99999999
Q ss_pred HHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccccc
Q 005109 186 FTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 239 (714)
Q Consensus 186 L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD 239 (714)
|. .. ++++++++||+++..| |.+.+.+++.|+++|++.+.+....+
T Consensus 73 l~----~~-l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~v~~~~~~~ 118 (138)
T 5nul_A 73 IS----TK-ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPLIVQ 118 (138)
T ss_dssp HG----GG-CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEECSCCEEEE
T ss_pred HH----hh-cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEEECCceEEe
Confidence 96 22 8999999999876543 78899999999999999987654443
|
| >2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-17 Score=171.49 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=115.9
Q ss_pred CChHHHHHHhcCC----CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 476 PPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 476 ~p~~~~l~~i~p~----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
..+|||+.+.+|. ...|+|||+|.+. ++++|.+.++ ...|.+|+||+++.+|+ .+.|..
T Consensus 39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~--------~~~G~~S~~l~~l~~Gd------~l~v~g 101 (252)
T 2gpj_A 39 DQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLH--------DTDGPASSWAKTAQVGE------LIQIGG 101 (252)
T ss_dssp CCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECC--------SSCCHHHHHHHHCCTTC------EEEEEE
T ss_pred CCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEe--------CCCCcHHHHHhhCCCCC------EEEEec
Confidence 3579998776663 4579999999764 5666665421 11388999999888876 578889
Q ss_pred ecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEE
Q 005109 552 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 631 (714)
Q Consensus 552 ~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~ 631 (714)
|.|.|.++.+ ..+++|||+|||||||++|+++... . .++++|+++|+.+ |.++ |+ ....+++++
T Consensus 102 P~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~---~----~~~~~~~~~~~~~-d~~~---l~----~~~~~~v~~ 165 (252)
T 2gpj_A 102 PGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPN---N----AVGYAVIEVLSEA-DIQP---LV----HPEHVELHW 165 (252)
T ss_dssp EECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCT---T----CEEEEEEEESSGG-GCCC---CC----CCTEEEEEE
T ss_pred CCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCC---C----CcEEEEEEECCHH-Hhhc---cc----CCCCcEEEE
Confidence 9999998754 4789999999999999999998732 1 4678999999976 6542 21 122345666
Q ss_pred EEecCCCC-cccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHH
Q 005109 632 AFSREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH 682 (714)
Q Consensus 632 a~Sr~~~~-k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~ 682 (714)
+++.+... ...+.+.+.+. .+...+.++|+||| ++|+++|++.|.
T Consensus 166 ~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~vy~CGP-~~m~~av~~~l~ 211 (252)
T 2gpj_A 166 VINPEADPEGRPLVERIAQL-----PWLAGEPAVWIACE-FNSMRALRRHFK 211 (252)
T ss_dssp EECSSCCTTCHHHHHHHTTS-----CCCSSCEEEEEEEE-HHHHHHHHHHHH
T ss_pred EeCCCCCcccHHHHHHHHhc-----cCCCCCcEEEEEcC-HHHHHHHHHHHH
Confidence 66543221 11222222210 01124578999999 899999999887
|
| >3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-17 Score=155.90 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=109.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
|+|+|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+.+.++ ...++.+++.+||++|||| |.+|+ ..|++
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~--~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~ 73 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTG--VAVEMVDLRAVDPQE--LIEAVSSARGIVLGTPPSQ-PSEAV--ATALS 73 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTT--CCEEEEETTTCCHHH--HHHHHHHCSEEEEECCBSS-CCHHH--HHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCC--CeEEEEECCCCCHHH--HHHHHHhCCEEEEEcCCcC-CchhH--HHHHH
Confidence 57999999999999999999999998765 467899998876533 3455678999999999996 88774 88999
Q ss_pred HHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHHH
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELD 260 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L~ 260 (714)
.|. ...++++++++||. |.|+|.+.+.+++.|+++|++.+.+........ ...+...+|.+.+...|.
T Consensus 74 ~l~----~~~l~gk~v~~fgs----~g~~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~ 143 (161)
T 3hly_A 74 TIF----AAAHNKQAIGLFDS----YGGDDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLT 143 (161)
T ss_dssp HHH----HHCCTTSEEEEECC----CCSSBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----hhhhCCCEEEEEEc----CCCCcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHH
Confidence 886 22478999999994 666789999999999999999887644333222 233456677777766554
|
| >2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-17 Score=149.57 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=86.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L 186 (714)
++|+|+|+|||||++|++|+ +. + + ++++ +.+ .++.++|++||||+|++|+++..|++.
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~~--~----~---~i~~---------~~~-~~~~ii~g~pt~~~g~~p~~~~~fl~~- 58 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--MP--A----V---QIGE---------DLV-IDEDFILITYTTGFGNVPERVLEFLER- 58 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--SC--E----E---ECCT---------TCC-CCSCEEEEECCBTTTBCCHHHHHHHHH-
T ss_pred CEEEEECCChhHHHHHHHhc--cc--C----C---CcCc---------ccc-cCCCEEEEEeecCCCcCCHHHHHHHHH-
Confidence 47999999999999999998 22 2 2 2321 123 488999999999999999999999865
Q ss_pred HhccCCCccCCceEEEEeccCCchhH-HHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHH
Q 005109 187 TEKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 256 (714)
Q Consensus 187 ~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~ 256 (714)
+++++|+|||+||++|++ ||.+++.++++|. ....... .+..+....+.+.+|.++++
T Consensus 59 --------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~~~~~~~-~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 59 --------NNEKLKGVSASGNRNWGDMFGASADKISAKYE---VPIVSKF-ELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp --------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---CCEEEEE-ETTCCHHHHHHHHHHHHHHT
T ss_pred --------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---CccEEEE-ecCCCHHHHHHHHHHHHHhc
Confidence 457899999999999977 9999999999874 3322222 22222223455788987765
|
| >3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.9e-17 Score=154.96 Aligned_cols=143 Identities=11% Similarity=0.043 Sum_probs=112.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccc-cccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
.++|+|+|+|+||||+++|+.|++.+.+.| ..++++|+.+. +.++ ...++.+++.+||++|||+ |++| +..|
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~~--~~~~~~~~d~ii~Gspty~-g~~p--~~~~ 76 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTG--VGVDVVDLGAAVDLQE--LRELVGRCTGLVIGMSPAA-SAAS--IQGA 76 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTT--CEEEEEESSSCCCHHH--HHHHHHTEEEEEEECCBTT-SHHH--HHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCC--CeEEEEECcCcCCHHH--HHHHHHhCCEEEEEcCcCC-CCcc--HHHH
Confidence 468999999999999999999999998865 56889999877 5432 3456778999999999996 8876 4889
Q ss_pred HHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHHH
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELD 260 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L~ 260 (714)
++.|. ...++++++++|| +|.|+|.+.+.+.++|+++|++.+.+........ ...+...+|.+.|...+.
T Consensus 77 l~~l~----~~~~~~k~va~fg----s~g~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~~~ 148 (159)
T 3fni_A 77 LSTIL----GSVNEKQAVGIFE----TGGGDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQWVT 148 (159)
T ss_dssp HHHHH----HHCCTTSEEEEEC----CSSSCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----hhcccCCEEEEEE----cCCCCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 98886 2347899999999 4677888999999999999999887655443322 233456677777776665
Q ss_pred h
Q 005109 261 N 261 (714)
Q Consensus 261 ~ 261 (714)
+
T Consensus 149 ~ 149 (159)
T 3fni_A 149 R 149 (159)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-16 Score=155.11 Aligned_cols=134 Identities=13% Similarity=0.214 Sum_probs=90.3
Q ss_pred EEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc---CCCCCcEEEEEeeecCCcccc-hHHHHHHHHHc--
Q 005109 550 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA---GAELGPSLLFFGCRNRKMDYI-YEDELNNFVQS-- 623 (714)
Q Consensus 550 ~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~---~~~~~~~~Lf~G~R~~~~D~l-y~dEL~~~~~~-- 623 (714)
.+|.|.|.++....+|+||||+|||||||+++++++...... +....+++|+||+|+.+ +++ |.+||+++.+.
T Consensus 4 ~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~-~~~w~~~~l~~l~~~~~ 82 (186)
T 3a1f_A 4 DGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTH-AFEWFADLLQLLESQMQ 82 (186)
T ss_dssp TSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTT-TTHHHHHHHHHHHHHHH
T ss_pred ECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcc-hHHHHHHHHHHHHHHHh
Confidence 346677776444467899999999999999999999875421 11247899999999998 887 99999999875
Q ss_pred ----CCCcEEEEEEecCCC---Ccccccc-----hh----------hhchHH----HHhcc-cCCcEEEEecCchhhHHH
Q 005109 624 ----GALSQLIVAFSREGP---TKEYVQH-----KM----------MEKSSD----IWNML-SEGAYLYVCGDAKSMARD 676 (714)
Q Consensus 624 ----g~~~~l~~a~Sr~~~---~k~yVq~-----~l----------~e~~~~----l~~~i-~~~~~iyvCGpa~~M~~~ 676 (714)
...+++++++|++.. .+.|++. .+ +-+.+. +.... ..+..||+||| ++|+++
T Consensus 83 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP-~~m~~~ 161 (186)
T 3a1f_A 83 ERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP-EALAET 161 (186)
T ss_dssp HTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC-HHHHHH
T ss_pred hccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC-HHHHHH
Confidence 235678888988532 1122221 00 001111 11111 23678999999 899999
Q ss_pred HHHHHHHHH
Q 005109 677 VHRTLHTIV 685 (714)
Q Consensus 677 V~~~L~~i~ 685 (714)
|++.|.+..
T Consensus 162 v~~~l~~~g 170 (186)
T 3a1f_A 162 LSKQSISNS 170 (186)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999887653
|
| >2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=141.14 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=105.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCc-hHHHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAARFYKW 185 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pd-na~~F~~~ 185 (714)
++|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+++. .++.+++.+||++|||+.|.+|+ +++.|+++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAG--ADVESVRFEDTNV------DDVASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTT--CCEEEEETTSCCH------HHHHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCC--CeEEEEEcccCCH------HHHhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 789999999999999999999998765 5678899988764 45788999999999999999888 49999999
Q ss_pred HHhccCCCccCCceEEEEeccCCchhH-HHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHH
Q 005109 186 FTEKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 255 (714)
Q Consensus 186 L~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l 255 (714)
+. ..++++++++||. |.+ ||.+.+.+++.|..+|++.+ +....+...+..+.+.+|.+++
T Consensus 74 l~-----~~l~~k~~~~~~t----~g~~~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~l 134 (137)
T 2fz5_A 74 LA-----PKLKGKKVGLFGS----YGWGSGEWMDAWKQRTEDTGATVI-GTAIVNEMPDNAPECKELGEAA 134 (137)
T ss_dssp HG-----GGCSSCEEEEEEE----ESSCCSHHHHHHHHHHHHTTCEEE-EEEEEESSSSSCTHHHHHHHHH
T ss_pred hh-----hhcCCCEEEEEEe----cCCCCchHHHHHHHHHHHCCCEEc-CcEEEeeCCChHHHHHHHHHHH
Confidence 95 2588999999995 433 78999999999999999987 4322222111156677777665
|
| >1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-16 Score=146.47 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=87.0
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
+++.|+|+|+||||+.+|++|+++ . .+++.+ .+..++.+++++||||+|++|+++.+|++
T Consensus 9 m~i~I~Y~S~TGNt~~vA~~l~~~-------~---~~~i~~----------~~~~~~~~ilv~pTyG~G~~P~~v~~Fl~ 68 (139)
T 1rlj_A 9 AMVQIIFDSKTGNVQRFVNKTGFQ-------Q---IRKVDE----------MDHVDTPFVLVTYTTNFGQVPASTQSFLE 68 (139)
T ss_dssp SCCEEEECCSSSHHHHHHTTSCCS-------E---EEETTS----------CSCCCSCEEEEECCBGGGBCCHHHHHHHH
T ss_pred CEEEEEEECCChhHHHHHHHhccc-------c---ceEecc----------ccccCCCEEEEEcCcCCCcCcHHHHHHHH
Confidence 467899999999999999988642 0 123322 14455778999999999999999999885
Q ss_pred HHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHH
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 257 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~ 257 (714)
.. .++.|+|||+||++| +.||.+++.+++.+ |...+... +.+-.....+.+.+|.+++|.
T Consensus 69 ~~---------~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~~~~-el~g~~~D~~~~~~~~~~~~~ 129 (139)
T 1rlj_A 69 KY---------AHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILHKF-ELSGTSKDVELFTQEVERVVT 129 (139)
T ss_dssp HH---------GGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEEEE-ETTCCHHHHHHHHHHHHHHHH
T ss_pred hC---------CCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCcceE-EEcCCHHHHHHHHHHHHHHHH
Confidence 32 247899999999999 78999999988776 44332211 111111234568899888875
|
| >3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=144.32 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=83.6
Q ss_pred eEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCc
Q 005109 548 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 627 (714)
Q Consensus 548 ~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~ 627 (714)
.|.+|.|+|...++ .++++|||+||||||+++++++..+.+ .++.|+ |+|+++ |.+|.+||+++.++ .
T Consensus 4 ~v~GP~G~~~~~~~-~~~~llIaGG~GiaPl~sm~~~l~~~~------~~v~l~-g~R~~~-~~~~~~el~~l~~~---~ 71 (142)
T 3lyu_A 4 NVAGPLGTPVPMEK-FGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---H 71 (142)
T ss_dssp ---CCCSCCBCCCC-CSEEEEEEETTHHHHHHHHHHHHHHTT------CEEEEE-EEEEGG-GCCSHHHHHTTSSE---E
T ss_pred eeeCCCCCCccCCC-CCeEEEEECcCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhh---e
Confidence 46677787765543 689999999999999999999887543 478999 999998 99999999987542 1
Q ss_pred EEEEEEecCCC--------CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 628 QLIVAFSREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 628 ~l~~a~Sr~~~--------~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.+..+++++.. .+++|.+.+.+. ... .+...||+||| ++|+++|.+.+.+.
T Consensus 72 ~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~----~~~-~~~~~vy~CGP-~~Mm~av~~~l~~~ 130 (142)
T 3lyu_A 72 IVEPVPLNPNQDFLANMKNVSQRLKEKVREL----LES-EDWDLVFMVGP-VGDQKQVFEVVKEY 130 (142)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHHHHH----HHS-SCCSEEEEESC-HHHHHHHHHHHHHH
T ss_pred EEEEeecccccCCCCCCCCCccchhHHHHHh----ccc-CCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 23333443211 245666544332 111 24568999999 99999999888764
|
| >3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.3e-16 Score=148.45 Aligned_cols=120 Identities=11% Similarity=0.046 Sum_probs=82.6
Q ss_pred eeEEEecCCccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCC
Q 005109 547 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 626 (714)
Q Consensus 547 v~i~v~~~~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~ 626 (714)
+.|..|.|+|.... ..+|++|||+||||||+++++++....+ .+++|+ |+|+.+ |.+|.+||+++..+
T Consensus 8 l~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~------~~v~l~-g~r~~~-d~~~~~el~~l~~~--- 75 (158)
T 3lrx_A 8 LNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR--- 75 (158)
T ss_dssp ----CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT------CEEEEE-EECBGG-GCCSHHHHHHHSSE---
T ss_pred eEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhc---
Confidence 36778888765433 4689999999999999999999987543 479999 999998 99999999998642
Q ss_pred cEEEEEEecCC------C--CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 627 SQLIVAFSREG------P--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 627 ~~l~~a~Sr~~------~--~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
..+..++++.. . .+++|++.+.+. +.+ .+...||+||| ++|+++|.+.|.+.
T Consensus 76 ~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~---l~~--~~~~~vy~CGP-~~mm~~v~~~l~~~ 135 (158)
T 3lrx_A 76 HIVEPVPLNPNQDFLANMKNVSQRLKEKVREL---LES--EDWDLVFMVGP-VGDQKQVFEVVKEY 135 (158)
T ss_dssp EEECCBCCCTTSCHHHHHHHHHHHHHHHHHHH---HHH--SCCSEEEEESC-HHHHHHHHHHHGGG
T ss_pred eEEEEeeccccccCCCCCCCCcccccHHHHHh---hcc--CCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 12222233211 1 246666544332 111 14568999999 99999999887654
|
| >4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6e-13 Score=146.73 Aligned_cols=119 Identities=18% Similarity=0.105 Sum_probs=98.5
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeE---EecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFK---VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNA 179 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~---v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna 179 (714)
..++|+|+|+|++||||++|+.|++.+.++| ..+. +.|++..+. .++..++.+++.+||++||| +|++++.+
T Consensus 264 ~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~G--v~~~~~~~~d~~~~~~--s~i~~~i~~~~~ivlGspT~-~~~~~p~~ 338 (410)
T 4dik_A 264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKG--FTPVVYKFSDEERPAI--SEILKDIPDSEALIFGVSTY-EAEIHPLM 338 (410)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTT--CEEEEEEECSSCCCCH--HHHHHHSTTCSEEEEEECCT-TSSSCHHH
T ss_pred cccceeeEEecccChHHHHHHHHHHHHHhcC--CceEEEEeccCCCCCH--HHHHHHHHhCCeEEEEeCCc-CCcCCHHH
Confidence 4568999999999999999999999999887 3333 445544443 34567788999999999999 57788899
Q ss_pred HHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 180 ARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 180 ~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
..|+..+. ...++++++++|| +|.|.+.+++.+.++|+++|++.+-+
T Consensus 339 ~~~l~~l~----~~~~~~K~~~~FG----SyGWsg~a~~~~~~~l~~~~~~~v~~ 385 (410)
T 4dik_A 339 RFTLLEII----DKANYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSF 385 (410)
T ss_dssp HHHHHHHH----HHCCCCCEEEEEE----ECCCCCTTSCCHHHHHTTSSCEEEEE
T ss_pred HHHHHHHH----hcccCCCEEEEEE----CCCCCcHHHHHHHHHHHHCCCEEECc
Confidence 99999887 3457899999999 78999999999999999999986544
|
| >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=140.68 Aligned_cols=146 Identities=17% Similarity=0.169 Sum_probs=114.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
.++++|+|+|+||||+++|+.|++.+.+.+ ..++++++.+.+.+ +...++.+++.+||++||||.|.+| .++.|+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~gsp~~~~~~~~-~~~~~l 326 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEG--CTVKLMWCKACHHS--QIMSEISDAGAVIVGSPTHNNGILP-YVAGTL 326 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEETTTSCHH--HHHHHHHTCSEEEEECCCBTTBCCH-HHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECCccCCCchH-HHHHHH
Confidence 589999999999999999999999998765 56788898876643 2345678999999999999777766 799999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccC--CCCchhhHHHHHHHHHHHHHh
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~--~~~~e~~f~~W~~~l~~~L~~ 261 (714)
+++. ...++++++++|| +|.++|.+.+.+.+.|..+|++.+.+....+. +....+.+.+|.+++...+++
T Consensus 327 ~~l~----~~~l~~k~~~~f~----t~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~ 398 (402)
T 1e5d_A 327 QYIK----GLRPQNKIGGAFG----SFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALKA 398 (402)
T ss_dssp HHHH----HTCCCSCEEEEEE----EESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh----hcccCCCEEEEEE----cCCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9986 3358899999999 46778999999999999999998864332222 222334566777777666654
Q ss_pred h
Q 005109 262 L 262 (714)
Q Consensus 262 ~ 262 (714)
.
T Consensus 399 ~ 399 (402)
T 1e5d_A 399 K 399 (402)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-12 Score=125.38 Aligned_cols=128 Identities=13% Similarity=-0.020 Sum_probs=101.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccch-------------HHHHhhcCCCeEEEEEeCC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED-------------EYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~-------------~~~~~l~~~~~vif~~sTy 170 (714)
|++|+|+|+|.+|||+.+|+.+++.+.+.+ ..++++|+.++..... ...+++.+++.+||++|||
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y 82 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGG--FEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR 82 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECB
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCC--CEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChh
Confidence 579999999999999999999999998765 5678888877421100 1135688999999999999
Q ss_pred CCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 171 GDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
.|.+|..++.|++++........++++++++|+.+...+..++.+...+.+.|..+|++.+.+
T Consensus 83 -~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 83 -FGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp -TTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred -ccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 789999999999998611001247899999999988776666778899999999999987643
|
| >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=142.37 Aligned_cols=119 Identities=17% Similarity=0.098 Sum_probs=99.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
.++++|+|+|+||||+++|+.+++.+.+.+ ..++++|+.+.+.. ++..++.+++.+||++|||+.|.|| .++.|+
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~g~p~y~~~~~~-~~~~~l 325 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGG--CEVKLFKLSVSDRN--DVIKEILDARAVLVGSPTINNDILP-VVSPLL 325 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGSCHH--HHHHHHHHCSEEEEECCCBTTBCCG-GGHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECCccCccchH-HHHHHH
Confidence 578999999999999999999999998765 56788888776542 2345677899999999999777776 599999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccc
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPV 235 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~ 235 (714)
++|. ...++++++++||. |.++|.+.+.+++.|..+|++.+.+.
T Consensus 326 ~~l~----~~~~~~k~~~~~~s----~g~~~~a~~~l~~~l~~~g~~~~~~~ 369 (398)
T 1ycg_A 326 DDLV----GLRPKNKVGLAFGA----YGWGGGAQKILEERLKAAKIELIAEP 369 (398)
T ss_dssp HHHH----HHCCSSCEEEEEEE----ESSSCCHHHHHHHHHHHTTCEESCSS
T ss_pred HHHh----ccccCCCEEEEEEe----CCCchHHHHHHHHHHHHCCeEEecCc
Confidence 9986 23478999999994 77889999999999999999988754
|
| >2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 | Back alignment and structure |
|---|
Probab=99.34 E-value=9.4e-12 Score=122.45 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=109.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
|++|+|+|+|+||||+.+|+.|++.+.+ .+ ..++++|+.+.+. .++.+++.+||++||| .|.+|..++.|
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g--~~v~~~~l~~~~~------~~l~~aD~ii~gsP~y-~g~~~~~lk~f 74 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEG--TEVRLKHVDEATK------EDVLWADGLAVGSPTN-MGLVSWKMKRF 74 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTT--EEEEEEETTTCCH------HHHHHCSEEEEEEECB-TTBCCHHHHHH
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCC--CeEEEEEhhhCCH------HHHHhCCEEEEEeCcc-CCcCCHHHHHH
Confidence 6799999999999999999999999987 55 5678899988763 4577899999999999 99999999999
Q ss_pred HHHHHhccCCCccCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCccccc------c-----c---cccCC-CCchh
Q 005109 183 YKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP------V-----G---LGDDD-QCIED 246 (714)
Q Consensus 183 ~~~L~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~~~~------~-----g---~gD~~-~~~e~ 246 (714)
++++.... ...++++++++||. |+.. ..+..+.+.+.+.|..+|+..+.. . | .+.-+ ....+
T Consensus 75 ld~~~~~~-~~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 152 (188)
T 2ark_A 75 FDDVLGDL-WGEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEEKE 152 (188)
T ss_dssp HHHTGGGT-TTSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCSHHHHH
T ss_pred HHHHhhhh-HHHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCcHHHHH
Confidence 99986200 13588999999998 5443 234556677888888888865421 0 1 11111 11234
Q ss_pred hHHHHHHHHHHHHHhhh
Q 005109 247 DFSAWRELVWPELDNLL 263 (714)
Q Consensus 247 ~f~~W~~~l~~~L~~~~ 263 (714)
....|-+.+...+.++.
T Consensus 153 ~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 153 ACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45577777777666553
|
| >3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-12 Score=119.57 Aligned_cols=98 Identities=17% Similarity=0.398 Sum_probs=74.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCC----CCCCCchH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYG----DGEPTDNA 179 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG----~G~~pdna 179 (714)
++..+|+|.|.||||+.|+++|... ... +++.+ . +.+..++.+|+++|||| .|+.|+.+
T Consensus 20 ~~~~ivYfsS~TGNT~rFv~kL~~~--------~~~-I~~~~--~------~~~~~~ep~vlv~PTYg~g~~~G~vP~~v 82 (153)
T 3n3a_C 20 HMSQLVYFSSSSENTQRFIERLGLP--------AVR-IPLNE--R------ERIQVDEPYILIVPSYGGGGTAGAVPRQV 82 (153)
T ss_dssp ---CEEECCCTTCHHHHHHHHHCSC--------CEE-CCSST--T------CCCCCCSCEEEEEECCTTSSSSSSSCHHH
T ss_pred cceeEEEEECCCcCHHHHHHHhCCc--------ccc-ccccc--C------cccccCCCEEEEEeccCCCCcCCcCcHHH
Confidence 4556799999999999999988421 112 23321 1 12345678999999999 59999999
Q ss_pred HHHHHHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHH
Q 005109 180 ARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILA 225 (714)
Q Consensus 180 ~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~ 225 (714)
.+|++.+. ..++.++|+|.||++| +.||.+++.+.+.+.
T Consensus 83 ~dFl~~~~-------n~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~ 122 (153)
T 3n3a_C 83 IRFLNDEH-------NRALLRGVIASGNRNFGEAYGRAGDVIARKCG 122 (153)
T ss_dssp HHHHTSHH-------HHHHEEEEEEEECGGGGGGTTHHHHHHHHHHT
T ss_pred HHHHhhhc-------ccCcEEEEEecCCCchhHHHHHHHHHHHHHhC
Confidence 99987654 2357799999999998 999999999999884
|
| >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-11 Score=132.65 Aligned_cols=146 Identities=15% Similarity=0.015 Sum_probs=109.6
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
.+++|+|+|+|+||||+++|+.|++.+.+.+ ..++++++.+.+.. +..+++.+++.+||++||| .|.+|..++.|
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g--~~v~~~~l~~~~~~--~~~~~l~~~D~iiigsP~y-~~~~~~~~k~f 329 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTG--CETVLLEMTSSDIT--KVALHTYDSGAVAFASPTL-NNTMMPSVAAA 329 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGCCHH--HHHHHHHTCSEEEEECCCB-TTBCCHHHHHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCC--CeEEEEEcCcCCHH--HHHHHHHhCCEEEEEcCcc-CcCchHHHHHH
Confidence 3689999999999999999999999998765 56788888876642 2335788999999999999 66666679999
Q ss_pred HHHHHhccCCCcc-CCceEEEEeccCCchhHHHHHHHHHHHHHHH-cCCcccccc-cccc--CCCCchhhHHHHHHHHHH
Q 005109 183 YKWFTEKEGGEWL-QKLKYGVFGLGNRQYEHFNKIAKVVDEILAN-QGAKRLVPV-GLGD--DDQCIEDDFSAWRELVWP 257 (714)
Q Consensus 183 ~~~L~~~~~~~~l-~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~-lGa~~~~~~-g~gD--~~~~~e~~f~~W~~~l~~ 257 (714)
++++. ...+ +++++++||.|+.. +.+.+.+.+.|.. +|++.+.+. .... -+....+....|.+++..
T Consensus 330 ld~l~----~~~~~~~K~~~~~~t~g~~----~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 401 (414)
T 2q9u_A 330 LNYVR----GLTLIKGKPAFAFGAFGWS----NRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLGK 401 (414)
T ss_dssp HHHHH----HHTTTTTSBEEEEEEESSS----CCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHH----hhcccCCCEEEEEEecCCC----chhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 99986 2346 89999999977543 5678899999999 999987643 2222 122223455666666655
Q ss_pred HHHh
Q 005109 258 ELDN 261 (714)
Q Consensus 258 ~L~~ 261 (714)
.+.+
T Consensus 402 ~~~~ 405 (414)
T 2q9u_A 402 RAIA 405 (414)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=118.52 Aligned_cols=125 Identities=17% Similarity=0.099 Sum_probs=97.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCCeeEEecCccccccc--------------hHHHHhhcCCCeEEEEEe
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEE--------------DEYEEKLKKENIVFFFLA 168 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~--------------~~~~~~l~~~~~vif~~s 168 (714)
|++|+|+|+|.+|||+.+|+.+++.+.+ .+ ..++++|+.+....+ .+ ..++.+++.+||++|
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsP 77 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDG--AEVVVKRVPETMPPQLFEKAGGKTQTAPVAT-PQELADYDAIIFGTP 77 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTT--CEEEEEECCCCSCHHHHHHTTCCCCCSCBCC-GGGGGGCSEEEEEEE
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCC--CEEEEEEccccCchhhhhhcccccccCchhh-HHHHHHCCEEEEEeC
Confidence 5789999999999999999999999987 55 568888887642110 01 356889999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
|| .|.+|..++.|++++........++++++++|+.+... .....+.+.+...|..+|+..+.
T Consensus 78 ~y-~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 78 TR-FGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp EE-TTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred hh-cCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 99 99999999999999851100124889999999987655 44556778888889888987654
|
| >3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.1e-11 Score=114.58 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=90.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccc--------------------h---HHHHhhcCC
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE--------------------D---EYEEKLKKE 160 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~--------------------~---~~~~~l~~~ 160 (714)
+++++|+|.|+||||+++|+.|++.+.... +.+.+...|..++ . ....++.++
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~~~----~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~y 79 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGADL----YEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKY 79 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTCEE----EECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGC
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCCCe----EEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhC
Confidence 468999999999999999999999885421 2232222222100 0 012357789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCcccccccccc
Q 005109 161 NIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGD 239 (714)
Q Consensus 161 ~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD 239 (714)
+.+||++||| .|.+|..+..|++.+ .++++++++|+. |++.+ ..+.+.+.+.|. |++-+ +-...
T Consensus 80 d~iilG~P~~-~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~~---g~~~~~l~~~l~--~~~~~-~g~~~- 144 (162)
T 3klb_A 80 EVLFVGFPVW-WYIAPTIINTFLESY-------DFAGKIVVPFATSGGSGI---GNCEKNLHKAYP--DIVWK-DGKLL- 144 (162)
T ss_dssp SEEEEEEECB-TTBCCHHHHHHHHTS-------CCTTCEEEEEEECSSCCS---HHHHHHHHHHCT--TSEEC-CCEEC-
T ss_pred CEEEEEcccc-cCCCCHHHHHHHHhc-------CCCCCEEEEEEEeCCCCc---cHHHHHHHHHcC--CCEee-cceEE-
Confidence 9999999999 799998888887654 478999999986 44444 356677777764 55533 21111
Q ss_pred CCCCchhhHHHHHHHH
Q 005109 240 DDQCIEDDFSAWRELV 255 (714)
Q Consensus 240 ~~~~~e~~f~~W~~~l 255 (714)
.....++++.+|.+++
T Consensus 145 ~g~~~~~~v~~W~~~~ 160 (162)
T 3klb_A 145 NGQITRDLVTEWFEKI 160 (162)
T ss_dssp CSCCCHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHh
Confidence 1124578999998764
|
| >2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.9e-11 Score=116.09 Aligned_cols=125 Identities=12% Similarity=0.010 Sum_probs=97.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccc-------------c--ccchHHHHhhcCCCeEEEEEe
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-------------A--DEEDEYEEKLKKENIVFFFLA 168 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-------------~--~~~~~~~~~l~~~~~vif~~s 168 (714)
|++|+|+|+| +|||+.+|+.+++.+.+.+ ..++++|+.+. + ....+ .+++.+++.+||++|
T Consensus 4 mmkilii~~S-~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gsP 79 (199)
T 2zki_A 4 KPNILVLFYG-YGSIVELAKEIGKGAEEAG--AEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGSP 79 (199)
T ss_dssp CCEEEEEECC-SSHHHHHHHHHHHHHHHHS--CEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEEE
T ss_pred CcEEEEEEeC-ccHHHHHHHHHHHHHHhCC--CEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEECC
Confidence 5799999999 9999999999999998765 56788888775 0 00001 456888999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
+| .|.+|..++.|++++........++++++++|+.+...+.....+.+.+.+.|..+|+..+.
T Consensus 80 ~y-~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 80 TR-YGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp CB-TTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred cc-ccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 99 79999999999999851100235889999999987665543466778899999999988654
|
| >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-11 Score=131.35 Aligned_cols=146 Identities=16% Similarity=0.088 Sum_probs=108.9
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
+..++++|+|+|+||||+++|+.|++.+.+.+ ..++++|+.+.+.+ ++..++.+++.+||++||| .|.+|..++.
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g--~~v~~~~~~~~~~~--~~~~~l~~~d~iiigsP~y-~~~~~~~~k~ 328 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEG--VDVRVYCLHEDDRS--EIVKDILESGAIALGAPTI-YDEPYPSVGD 328 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTT--CEEEEEETTTSCHH--HHHHHHHTCSEEEEECCEE-TTEECTHHHH
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHhCC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECccc-cccchHHHHH
Confidence 35689999999999999999999999998755 56788999887642 2345788999999999999 5666668999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccC--CCCchhhHHHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPE 258 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~--~~~~e~~f~~W~~~l~~~ 258 (714)
|++++....... ++++++++||.|+.. +.+.+.+.+.|..+|++.+.+. .... +....+...+|.+++...
T Consensus 329 ~ld~l~~~~~~~-l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
T 2ohh_A 329 LLMYLRGLKFNR-TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACEE-EVYYVPTGDELDACFEAGRKLAAE 401 (404)
T ss_dssp HHHHHHHHCGGG-TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEEE-EEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccc-cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeEE-EEeeCCCHHHHHHHHHHHHHHHHH
Confidence 999997211112 689999999987554 6678899999999999987662 2221 212334455666655443
|
| >1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.7e-11 Score=117.81 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=100.9
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccc--------------------cccchHHHHhhcCCCe
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY--------------------ADEEDEYEEKLKKENI 162 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~--------------------~~~~~~~~~~l~~~~~ 162 (714)
.|++|+|+|+|.+|||+.+|+.+++.+.+.+ ..++++|+.+. +.. ....+++..++.
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~l~~aD~ 81 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAG--AEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVP-EATPADLEWAEA 81 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSC-BCCHHHHHHCSE
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCC--CEEEEEeccccccchhhhcccccccccccccchh-HHHHHHHHHCCE
Confidence 4689999999999999999999999998765 56788888775 210 122467888999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 163 VFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 163 vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
+||++|+| .|.+|..++.|++++........++++++++|+.+...+..+..+...+...|..+|+..+.+
T Consensus 82 ii~gsP~y-~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 82 IVFSSPTR-FGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp EEEEEEEE-TTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred EEEEcCcc-ccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 99999999 799999999999997511002348899999999877665445677888999999999886643
|
| >3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.9e-11 Score=116.41 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=94.2
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccc-cccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
.+++|+|+|+|.||||+.+|+.|++.+.+.+ +++.++ +..+ ...+++.+++.+||++||| .|.+|..++.
T Consensus 5 ~~~kiliiy~S~~GnT~~lA~~ia~~l~~~~-------~~v~~~~~~~~-~~~~~l~~~D~ii~gsP~y-~g~~~~~~k~ 75 (193)
T 3d7n_A 5 SSSNTVVVYHSGYGHTHRMAEAVAEGAEATL-------HAIDAEGNLSE-DGWAALDAADAIIFGTPTY-MGGPSWQFKK 75 (193)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCEE-------EECCTTSCCCH-HHHHHHHHCSEEEEEEEEE-TTEECHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHhhhcc-------eEeeecCCCCH-hHHHHHHHCCEEEEEeCcc-CCCccHHHHH
Confidence 4678999999999999999999999997532 344432 1111 1235788999999999999 6999999999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
|++++...-....++++++++|+.+...+..+..+...+...|..+|+..+
T Consensus 76 fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~v 126 (193)
T 3d7n_A 76 FADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWV 126 (193)
T ss_dssp HHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEe
Confidence 999985100023588999999999887776677888999999999988754
|
| >4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=112.00 Aligned_cols=135 Identities=14% Similarity=0.184 Sum_probs=91.4
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccch-----------------------HHHHhhc
Q 005109 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED-----------------------EYEEKLK 158 (714)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~-----------------------~~~~~l~ 158 (714)
..+++++|+|.|.||||+.+|+.|++.+.... +.+.+...|..++- ....++.
T Consensus 11 ~~~mkilIvY~S~tGnT~~vA~~Ia~~l~~d~----~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 86 (171)
T 4ici_A 11 HSNSKILVAYFSATGTTARAAEKLGAAVGGDL----YPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIG 86 (171)
T ss_dssp --CCCEEEEECCSSSHHHHHHHHHHHHHTCEE----EECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGG
T ss_pred cCCCCEEEEEECCCChHHHHHHHHHHHhCCCe----EEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHh
Confidence 45788999999999999999999999985321 23333333321000 0013577
Q ss_pred CCCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccc
Q 005109 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 238 (714)
Q Consensus 159 ~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~g 238 (714)
+++.+||++||| .|.+|..+..|++.+ .++++++++|+.+... .+..+.+.+.+.|. |++- .+....
T Consensus 87 ~yD~iilg~Pvy-~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~--~~g~a~~~l~~~l~--~~~~-~~g~~~ 153 (171)
T 4ici_A 87 TYDVVFIGYPIW-WDLAPRIINTFIEGH-------SLKGKTVVPFATSGGS--SIGNSATVLKKTYP--DLNW-KEGRLL 153 (171)
T ss_dssp GCSEEEEEEECB-TTBCCHHHHHHHHHS-------CCTTSEEEEEEECSSC--CSHHHHHHHHHHST--TSEE-CCCEEC
T ss_pred HCCEEEEecccc-cCCchHHHHHHHHHc-------CCCcCEEEEEEecCCC--CcchHHHHHHHHcC--CCee-ccCeEe
Confidence 899999999999 588998888888776 3789999999974322 23556677777774 4543 232222
Q ss_pred cCCCCchhhHHHHHHHH
Q 005109 239 DDDQCIEDDFSAWRELV 255 (714)
Q Consensus 239 D~~~~~e~~f~~W~~~l 255 (714)
. ...++++..|.+++
T Consensus 154 ~--~~~~~~i~~Wl~~~ 168 (171)
T 4ici_A 154 N--RTDEKAIRAWLDVI 168 (171)
T ss_dssp S--SCCHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHh
Confidence 1 13578899998775
|
| >2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=114.32 Aligned_cols=122 Identities=11% Similarity=0.071 Sum_probs=97.0
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHH-HHhhcCCCeeEEecCccccc-----------cchHHHHhhcCCCeEEEEEeC
Q 005109 104 KQKVTIFFGTQ--TGTAEGFAKALADE-ARARYDKAIFKVVDIDDYAD-----------EEDEYEEKLKKENIVFFFLAT 169 (714)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~-l~~~~~~~~v~v~dl~~~~~-----------~~~~~~~~l~~~~~vif~~sT 169 (714)
|++|+|+|||. +|+|+.+|+.+++. +.+.+ ..++++|+.++.. +-..+.+++.+.+.+||++|+
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g--~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~ 79 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSD--SQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPI 79 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSS--EEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCC--CeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCc
Confidence 57899999997 79999999999999 88765 5678899887643 112234567889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 170 YGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
| .|..|..++.|++|+. ...++++++++|+.|... .+++.....+...|..+|++.+.
T Consensus 80 y-~~~~p~~lK~~ld~l~----~~~~~gK~~~~~~tgg~~-~~~~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 80 Y-KASYTGLLKAFLDILP----QFALAGKAALPLATGGSP-AHVLALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp B-TTBCCHHHHHHHTTSC----TTTTTTCEEEEEEEESSG-GGGGHHHHTHHHHHHTTTCSEEC
T ss_pred c-CCCCCHHHHHHHHhcc----ccccCCCEEEEEEECCCc-chhhHHHHHHHHHHHHcCCEecc
Confidence 9 7889999999999985 346899999999997654 33443334688899999998764
|
| >1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-09 Score=105.00 Aligned_cols=156 Identities=11% Similarity=0.053 Sum_probs=114.9
Q ss_pred CceEEEEEeCCC---chHHHHHHHHHHHHHhhcCCCeeEEecCcccccc---------------------------chHH
Q 005109 104 KQKVTIFFGTQT---GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (714)
Q Consensus 104 ~~~v~I~YgSqt---Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~ 153 (714)
|++|+|+|||.+ |+|+.+|+.+++.+.+.++...++++|+.+++.. -.++
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDEL 80 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 578999999998 9999999999999998764456888998765321 0123
Q ss_pred HHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhcc---------CCCccCCceEEEEeccCCchhH--HHHHHHHHHH
Q 005109 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKE---------GGEWLQKLKYGVFGLGNRQYEH--FNKIAKVVDE 222 (714)
Q Consensus 154 ~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~---------~~~~l~~~~~aVFGlGds~Y~~--f~~~~k~ld~ 222 (714)
.+++...+.+||++|+| .|.+|...+.|++++.... ....++++++++|+.+...|.+ |+.+...+..
T Consensus 81 ~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~ 159 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKV 159 (201)
T ss_dssp HHHHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHH
Confidence 46788999999999999 8889999999999986110 0124789999999976666643 5667777888
Q ss_pred HHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHh
Q 005109 223 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 223 ~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 261 (714)
.|..+|++.+........+. .++..++|.++....+.+
T Consensus 160 ~l~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 197 (201)
T 1t5b_A 160 FLGFIGITDVNFVFAEGIAY-GPEVAAKAQADAKAAIDS 197 (201)
T ss_dssp HHHHTTCCCEEEEEECCGGG-CHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcceeEEEEEecccC-ChHHHHHHHHHHHHHHHH
Confidence 99999998764433322222 345557887776665544
|
| >3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-09 Score=100.32 Aligned_cols=127 Identities=9% Similarity=0.157 Sum_probs=84.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCc-cccccc--------------------hHHHHhhcCCCe
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDID-DYADEE--------------------DEYEEKLKKENI 162 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~-~~~~~~--------------------~~~~~~l~~~~~ 162 (714)
+++++|+|.|+||||+++|+.|++++...+ .+.+...+ .|+.+. .....++.+++.
T Consensus 3 ~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~---~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d~ 79 (151)
T 3edo_A 3 AKKTLILYYSWSGETKKMAEKINSEIKDSE---LKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYDL 79 (151)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHSTTCE---EEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCSE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHhccCCC---EEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCCE
Confidence 468999999999999999999999884321 01211111 122100 001235778999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC
Q 005109 163 VFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ 242 (714)
Q Consensus 163 vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~ 242 (714)
+||++||| .|.+|..+..|++.+. .+.++.+++|+.|...+ ..+.+.+.+.+. +++-+ + |..
T Consensus 80 iilG~P~~-~g~~~~~~~~fl~~~~------~~~~k~~~~~t~gg~~~---g~~~~~l~~~~~--~~~~~-~-g~~---- 141 (151)
T 3edo_A 80 ILIGSPVW-SGYPATPIKTLLDQMK------NYRGEVASFFTSAGTNH---KAYVSHFNEWAD--GLNVI-G-VAR---- 141 (151)
T ss_dssp EEEEEEEE-TTEECTHHHHHHHHTT------TCCSEEEEEEECSSCCH---HHHHHHHHHHTT--TSEEE-E-EEE----
T ss_pred EEEEccee-cccccHHHHHHHHhch------hcCCEEEEEEEeCCCCC---CcHHHHHHHHcC--CCeee-c-ccc----
Confidence 99999999 6999999999999873 36788999999887765 344566666663 44432 2 111
Q ss_pred CchhhHHHHH
Q 005109 243 CIEDDFSAWR 252 (714)
Q Consensus 243 ~~e~~f~~W~ 252 (714)
++.++.+|.
T Consensus 142 -~~~~~~~w~ 150 (151)
T 3edo_A 142 -DDSEVDKWS 150 (151)
T ss_dssp -TTTTHHHHH
T ss_pred -cHHHHHHHh
Confidence 124688885
|
| >1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.2e-08 Score=101.07 Aligned_cols=152 Identities=11% Similarity=0.107 Sum_probs=109.5
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhh-cCCCeeEEecCccccc----------------------cchHHHHhhc
Q 005109 104 KQKVTIFFGTQT--GTAEGFAKALADEARAR-YDKAIFKVVDIDDYAD----------------------EEDEYEEKLK 158 (714)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~-~~~~~v~v~dl~~~~~----------------------~~~~~~~~l~ 158 (714)
|++|+|+|||.. |+|+.+|+.+++.+.+. + ..++++|+.++.+ +-.++.+++.
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g--~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~ 78 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNN--VDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELL 78 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSC--CEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcC--CeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHH
Confidence 578999999996 99999999999999876 5 5678888876532 1123446788
Q ss_pred CCCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccc
Q 005109 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 238 (714)
Q Consensus 159 ~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~g 238 (714)
..+.+||++|+| .|.+|..++.|++++........++++++++|+.+... .+..+.+.+...|..+|+..+.+....
T Consensus 79 ~AD~iI~~sP~y-~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~G~~~v~~~~~~ 155 (242)
T 1sqs_A 79 ESDIIIISSPVY-LQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYMGGQILHQVSIT 155 (242)
T ss_dssp HCSEEEEEEEEC-SSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HCCEEEEEcccc-ccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHCCCeeeeEEEEe
Confidence 999999999999 99999999999999851111235889999999765322 122456778888999999876554332
Q ss_pred cC-CCCchhhHHHHHHHHHHHHH
Q 005109 239 DD-DQCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 239 D~-~~~~e~~f~~W~~~l~~~L~ 260 (714)
+. .....+.+..+.+.+...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~la~~i~ 178 (242)
T 1sqs_A 156 NSLKDIAEAQLMEATYKIEDVLE 178 (242)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHT
T ss_pred ccCChHHHHHHHHHHHHHHHHHh
Confidence 21 11244566667766665554
|
| >1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4 | Back alignment and structure |
|---|
Probab=98.76 E-value=6.9e-08 Score=94.64 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=94.7
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhc----CCCeeEEecCccccc----------------------c-chHHHH
Q 005109 105 QKVTIFFGTQT--GTAEGFAKALADEARARY----DKAIFKVVDIDDYAD----------------------E-EDEYEE 155 (714)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~----~~~~v~v~dl~~~~~----------------------~-~~~~~~ 155 (714)
|+|+|+|||.+ |+|+.+|+.+.+.+.+.+ +...++++|+.+++. + ..++.+
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHH
Confidence 47999999998 999999999999998753 135678888865322 0 013456
Q ss_pred hhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 156 ~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
++...+.+||++|+| .|.+|..++.|++++. ..++++++++|+.|... . ..+...+...|..+|++.+.
T Consensus 81 ~l~~aD~iI~~sP~y-~~~~p~~lK~~iD~~~-----~~l~gK~~~~~~~G~~~-~--~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLY-----HEWHGKPALVVSYGGHG-G--SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCS-----TTTTTCEEEEEEEETTT-T--HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCEEEEEeceE-CCCCCHHHHHHHHHHH-----hhcCCCEEEEEEeCCcc-h--hhHHHHHHHHHHHCCCEEcc
Confidence 788999999999999 8899999999999984 24889999999988743 2 34667888899999998654
|
| >1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.6e-08 Score=97.00 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=95.1
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCccccc------------cchHHHHhhcCCCeEEEEEeC
Q 005109 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------EEDEYEEKLKKENIVFFFLAT 169 (714)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------~~~~~~~~l~~~~~vif~~sT 169 (714)
+++|+|+|||.. |+|+.+|+.+++.+. .+ ..++++|+.++.. +-.++.+++...+.+||++|+
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g--~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~ 82 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIGLVP-PG--MSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPE 82 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHTTCC-TT--CEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHhcc-CC--CeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccc
Confidence 468999999985 999999999999887 33 5678888876432 112234678899999999999
Q ss_pred CCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 170 YGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
| .|..|...+.|++++..... ..++++++++|+.+...+. ...+...+...|..+|++.+.
T Consensus 83 y-~~~~p~~lK~~iD~~~~~~~-~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 83 Y-NYSMAGVLKNAIDWASRPPE-QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp E-TTEECHHHHHHHHHHTCSSS-CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred c-ccCcCHHHHHHHHHhccccC-cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 9 88899999999999961101 3589999999998754443 235668888899889998765
|
| >3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-08 Score=96.75 Aligned_cols=115 Identities=10% Similarity=0.190 Sum_probs=87.1
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCccccc-------------cchHHHHhhcCCCeEEEEEeC
Q 005109 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------EEDEYEEKLKKENIVFFFLAT 169 (714)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------~~~~~~~~l~~~~~vif~~sT 169 (714)
|+|+|+|||.+ |+|+.+|+.+++.+.. +++|+.+++. +-.++.+++.+.+.+||++|+
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~-------~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~ 73 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT-------DLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPE 73 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC-------EEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEEC
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc-------eEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCC
Confidence 47999999999 9999999999998754 3445544322 112234578899999999999
Q ss_pred CCCCCCCchHHHHHHHHHhccCCCccCCceEEEEec-cCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 170 YGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
| +|.+|..++.|++|+. ...++++++++|+. |... .+..+...+...|..+|+..+-
T Consensus 74 y-~~~~p~~lk~~lD~l~----~~~~~gK~~~~~~~sgg~~--g~~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 74 Y-HSGMSGALKNALDFLS----SEQFKYKPVALLAVAGGGD--GGINALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp S-SSSCCHHHHHHHHTCC----HHHHTTCEEEEEEECCSTT--CSHHHHHHHHHHHHHTTCEEEE
T ss_pred c-CCCCCHHHHHHHHHhC----HhhhCCCcEEEEEECCCCh--hHHHHHHHHHHHHHHcCCEEec
Confidence 9 9999999999999985 24588999999984 3221 2356778899999999998653
|
| >2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.5e-07 Score=90.80 Aligned_cols=156 Identities=8% Similarity=0.020 Sum_probs=108.9
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCCeeEEecCc--ccccc----------------------------
Q 005109 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDID--DYADE---------------------------- 149 (714)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~--~~~~~---------------------------- 149 (714)
|++|+|+|||.. |+|..+|+.+.+.+++.++...++++|+. +....
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQ 80 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHh
Confidence 578999999997 99999999999999987644678888887 64311
Q ss_pred ----chHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc-------c--CCCccCCceEEEEeccCCchhHHHHH
Q 005109 150 ----EDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK-------E--GGEWLQKLKYGVFGLGNRQYEHFNKI 216 (714)
Q Consensus 150 ----~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~-------~--~~~~l~~~~~aVFGlGds~Y~~f~~~ 216 (714)
-.++.+++...+.+||++|+| .|.+|..++.|++++... . ....++++++.+|......|.+-..+
T Consensus 81 ~~~~~~~~~~~l~~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~ 159 (208)
T 2hpv_A 81 KVARFNELTDQFLSADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFA 159 (208)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHH
T ss_pred hHHHHHHHHHHHHhCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchH
Confidence 011345678899999999999 999999999999998610 0 01237899999996543445321334
Q ss_pred HHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHh
Q 005109 217 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 217 ~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 261 (714)
...+...|.-+|++.+-.+.....+. .++..++|.++....+.+
T Consensus 160 ~~~l~~~~~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 203 (208)
T 2hpv_A 160 SQYIKAILNFIGVDQVDGLFIEGIDH-FPDRAEELLNTAMTKATE 203 (208)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTT-CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEccccC-CHHHHHHHHHHHHHHHHH
Confidence 56677788889998765443332232 335667777765554443
|
| >2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-06 Score=89.84 Aligned_cols=126 Identities=12% Similarity=0.036 Sum_probs=97.6
Q ss_pred cCCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCcccccc---------chHHHHhhcCCCeEEEEEeCC
Q 005109 102 DGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------EDEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------~~~~~~~l~~~~~vif~~sTy 170 (714)
..+++|+|+|||.. |+|+.+|+.+++.+.+.+ ..++++|+.+++.. -.++.+++...+.+||++|+|
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g--~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y 109 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFG--AEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPER 109 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTT--CEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCC--CEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC
Confidence 35689999999985 999999999999998755 57889998876521 123456788999999999999
Q ss_pred CCCCCCchHHHHHHHHHhcc-CCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 171 GDGEPTDNAARFYKWFTEKE-GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~-~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
+|..|...+.|++|+.... ....+++++.++++.+-.. ... .+...+...|..+|+..+
T Consensus 110 -n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg~-~a~~~Lr~~l~~lg~~~v 169 (247)
T 2q62_A 110 -HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QSF-NAVNQMRILGRWMRMITI 169 (247)
T ss_dssp -SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred -CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cHH-HHHHHHHHHHHHCCCEEe
Confidence 9999999999999996210 1135899999999985332 111 356788888888998865
|
| >1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=84.72 Aligned_cols=122 Identities=12% Similarity=0.116 Sum_probs=85.1
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCccccc------------------cchHHHHhhcCCCeE
Q 005109 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------------EEDEYEEKLKKENIV 163 (714)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------------~~~~~~~~l~~~~~v 163 (714)
|++|+|+|||.. |+|+.+|+.+++.+ .++++|+.+++. +-.+..+++.+.+.+
T Consensus 3 mMkilii~~S~r~~g~t~~la~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~i 75 (184)
T 1rli_A 3 AMKIAVINGGTRSGGNTDVLAEKAVQGF-------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHIL 75 (184)
T ss_dssp --CEEEEESSCSSCCHHHHHHHHHHTTT-------CCEEEEC-----------------------CHHHHHHHHHTCSEE
T ss_pred CcEEEEEECCCCCCccHHHHHHHHHcCC-------eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEE
Confidence 568999999965 99999999998755 234555544322 112234678899999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHhccC-------CCccCCceEEEEeccCCchh-HHHHHHHHHHHHHHHcCCcccc
Q 005109 164 FFFLATYGDGEPTDNAARFYKWFTEKEG-------GEWLQKLKYGVFGLGNRQYE-HFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 164 if~~sTyG~G~~pdna~~F~~~L~~~~~-------~~~l~~~~~aVFGlGds~Y~-~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
||++|+| .|.+|..++.|++++..... ...++++++++|+.+..... .+..+.+.+...|..+|++.+.
T Consensus 76 i~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~ 152 (184)
T 1rli_A 76 IFATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKG 152 (184)
T ss_dssp EEEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccce
Confidence 9999999 99999999999999851100 01478999999987654211 2334567888888889998664
|
| >3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.5e-06 Score=83.91 Aligned_cols=125 Identities=12% Similarity=0.140 Sum_probs=94.4
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc-----------chHHHHhhcCCCeEEEEEeCC
Q 005109 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------EDEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------~~~~~~~l~~~~~vif~~sTy 170 (714)
|++|+|++||. .|+++.+|+.+.+.+. .+ ..++++|+.++..- -.++.+++...+.+||++|+|
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~~--~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y 78 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-DR--AQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY 78 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-TS--SEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CC--CEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc
Confidence 57999999998 6999999999999986 33 56788888765321 123457788999999999999
Q ss_pred CCCCCCchHHHHHHHHHhc------cCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc
Q 005109 171 GDGEPTDNAARFYKWFTEK------EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 234 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~------~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~ 234 (714)
.|..|.-.+.|++|+... .....++++++++++.+... .+..+...+...|..+|++.+-.
T Consensus 79 -~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v~~ 145 (192)
T 3fvw_A 79 -NYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLVDQ 145 (192)
T ss_dssp -TTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCC
T ss_pred -ccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeeecc
Confidence 999999999999999721 11235899999999876552 22334567888888899986543
|
| >2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-06 Score=88.61 Aligned_cols=126 Identities=10% Similarity=0.002 Sum_probs=97.1
Q ss_pred cCCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCcccccc----------chHHHHhhcCCCeEEEEEeC
Q 005109 102 DGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------EDEYEEKLKKENIVFFFLAT 169 (714)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------~~~~~~~l~~~~~vif~~sT 169 (714)
..+++|+|+|||.. |+|+.+|+.+++.+.+.+ ..++++|+.+++.. -.++.+++...+.+||++|+
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G--~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~ 133 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFG--AETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPE 133 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTT--CEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCC--CEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCc
Confidence 45789999999986 999999999999998755 67888998776521 12245678889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhc-cCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 170 YGDGEPTDNAARFYKWFTEK-EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~-~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
| +|..|..++.|++|+... .....+++++.++++.+-.. ..+ .+...+...|..+|+..+
T Consensus 134 Y-n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv 194 (279)
T 2fzv_A 134 R-HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTI 194 (279)
T ss_dssp E-TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred c-ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEe
Confidence 9 999999999999999611 01135899999999985332 222 345678888888998865
|
| >3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.5e-06 Score=83.93 Aligned_cols=126 Identities=9% Similarity=0.117 Sum_probs=96.1
Q ss_pred cCCceEEEEEeCCC--chHHHHHHHHHH----HHHhhcCCCeeEEecCccccc------------c-chHHHHhhcCCCe
Q 005109 102 DGKQKVTIFFGTQT--GTAEGFAKALAD----EARARYDKAIFKVVDIDDYAD------------E-EDEYEEKLKKENI 162 (714)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~----~l~~~~~~~~v~v~dl~~~~~------------~-~~~~~~~l~~~~~ 162 (714)
..|.+|+++.||.. |++..+|+.+.+ .+.+++....++++|+.++.. + -.++.+++...+.
T Consensus 9 ~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ 88 (191)
T 3k1y_A 9 SHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDG 88 (191)
T ss_dssp CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSE
T ss_pred hhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCE
Confidence 35789999999975 889999999999 666554346688888876542 1 1234567888999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 163 VFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 163 vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
+||++|+| +|.+|..++.|++|+. ...+++++.++++.|... .+.......+...|..+|+..+-
T Consensus 89 ivi~sP~Y-~~~~~~~lK~~iD~~~----~~~l~gK~~~~v~t~G~~-~~~~~~~~~L~~il~~lg~~vv~ 153 (191)
T 3k1y_A 89 LVVATPVF-KASYTGLFKMFFDILD----TDALTGMPTIIAATAGSA-RHSLVLDYALRPLLSYMRAVVVP 153 (191)
T ss_dssp EEEEEECB-TTBSCHHHHHHHHHSC----TTTTTTCEEEEEEEESSS-TTTTHHHHTHHHHHHHTTCEECS
T ss_pred EEEEcCcc-CCcCcHHHHHHHHHhh----hhhcCCCEEEEEEeCCCc-chhhHHHHHHHHHHHHCCCEEcC
Confidence 99999999 9999999999999995 346899999999987433 33332233477888889998653
|
| >3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=6.2e-06 Score=82.19 Aligned_cols=156 Identities=10% Similarity=0.069 Sum_probs=108.2
Q ss_pred CceEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCCeeEEecCccccc---------------c-------------chH
Q 005109 104 KQKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------E-------------EDE 152 (714)
Q Consensus 104 ~~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------~-------------~~~ 152 (714)
|++|+|+|||..+ +|..+|+.+.+.+++.++...++++||.+.+. . -.+
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQ 80 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 6789999999876 59999999999998874336688888865421 0 112
Q ss_pred HHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc--------cCC-----CccCCceEEEEeccC--Cchh-----H
Q 005109 153 YEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK--------EGG-----EWLQKLKYGVFGLGN--RQYE-----H 212 (714)
Q Consensus 153 ~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~--------~~~-----~~l~~~~~aVFGlGd--s~Y~-----~ 212 (714)
+.+++...+.+||++|+| .+..|.-.+.|++++... ..+ ..|+++++.++.... ..|. .
T Consensus 81 ~~~~l~~AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~ 159 (212)
T 3r6w_A 81 LVGELFDSDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA 159 (212)
T ss_dssp HHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred HHHHHHhCCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence 346688899999999999 999999999999999510 111 258899988886533 2232 1
Q ss_pred HHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHh
Q 005109 213 FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 213 f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 261 (714)
+......+...|.-+|.+.+-....+..+. .+++.++|.++....+.+
T Consensus 160 ~~~~~~~l~~~l~~~G~~~~~~v~~~g~~~-~~~~~~~~l~~a~~~~~~ 207 (212)
T 3r6w_A 160 MNHADPWLRTALGFIGIDEVTVVAAEGEES-GGRSFEDSCDEAEQRLLA 207 (212)
T ss_dssp GCCSHHHHHHHHHHHTCCEEEEEEECCTTT-CHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHCCCceeEEEEEecccC-CHHHHHHHHHHHHHHHHH
Confidence 233446677778888998764443322222 466778887776665554
|
| >3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-05 Score=79.77 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=111.3
Q ss_pred cCCceEEEEEeCC------CchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCC
Q 005109 102 DGKQKVTIFFGTQ------TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEP 175 (714)
Q Consensus 102 ~~~~~v~I~YgSq------tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~ 175 (714)
..|++|+|++||. .+.+..+++.+.+.+.+.+ ..++++|+++ ..|-....+.+...+.+||++|.| .+..
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g--~ev~~~dL~~-~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~ 98 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESG--HQVKITTVDQ-GYDIESEIENYLWADTIIYQMPAW-WMGE 98 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTT--CCEEEEEGGG-CCCHHHHHHHHHHCSEEEEEEECB-TTBC
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCC--CEEEEEECCC-ccCHHHHHHHHHhCCEEEEECChH-hccC
Confidence 3478999999997 3688999999999998765 5688899875 222233457789999999999999 9999
Q ss_pred CchHHHHHHHHH-h-cc------------------CCCccCCceEEEEeccCCchhHH-------HH-----HHHHHHHH
Q 005109 176 TDNAARFYKWFT-E-KE------------------GGEWLQKLKYGVFGLGNRQYEHF-------NK-----IAKVVDEI 223 (714)
Q Consensus 176 pdna~~F~~~L~-~-~~------------------~~~~l~~~~~aVFGlGds~Y~~f-------~~-----~~k~ld~~ 223 (714)
|.-.+.|++++. . .. ....|+|+++.|+-..+...+.| +. .-.-+...
T Consensus 99 p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~ 178 (218)
T 3rpe_A 99 PWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKA 178 (218)
T ss_dssp CHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHH
Confidence 999999999985 1 10 12247899988776544442223 22 11224666
Q ss_pred HHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 224 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 224 L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
|.-+|.+.+-+....+... ++++++|.+++...|.+++
T Consensus 179 l~f~G~~~l~~~~~~g~~~--~~~~~~~~~~~~~~L~~~~ 216 (218)
T 3rpe_A 179 NQFLGMKPLPTFMCNDVIK--QPDIEGDIARYRQHLAENV 216 (218)
T ss_dssp HHHTTCEECCCEEECSTTT--SCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCEEeceEEEeCCCC--hHHHHHHHHHHHHHHHHhc
Confidence 7778999877766655443 4578888888877777654
|
| >4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-05 Score=79.88 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=94.0
Q ss_pred CceEEEEEeC--CCchHHHHHHHHHHHHHhhcCCCeeE-EecCccccc------------cchHHHHhhcCCCeEEEEEe
Q 005109 104 KQKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFK-VVDIDDYAD------------EEDEYEEKLKKENIVFFFLA 168 (714)
Q Consensus 104 ~~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~------------~~~~~~~~l~~~~~vif~~s 168 (714)
.++|+|++|| ..|+++.+|+.+.+.+.+ + ..++ ++|+.+... +-.++.+++...+.+||++|
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~~-g--~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP 82 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE-G--IAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCCT-T--EEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEEC
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHccC-C--CEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcC
Confidence 4689999999 669999999999888752 2 5577 777755421 11234566889999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
+| +|..|.-.+.|++|+... ....+.++++++++.+...+... .+...+...|..+|+..+-
T Consensus 83 ~Y-~~s~p~~LK~~iD~~~~~-~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~ 144 (199)
T 4hs4_A 83 EY-NYSVPGVLKNAIDWLSRV-SPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLN 144 (199)
T ss_dssp CB-TTBCCHHHHHHHHHHTTS-SSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECC
T ss_pred cc-CCCcCHHHHHHHHHhccc-CCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcC
Confidence 99 999999999999999721 12468999999999865444332 2456788888899998663
|
| >3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8e-06 Score=80.57 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=110.8
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCccccc-------------------cchHHHHhhcCCCeE
Q 005109 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------EEDEYEEKLKKENIV 163 (714)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------------~~~~~~~~l~~~~~v 163 (714)
|+|+|++||.. +++..+|+.+.+.+ ..+ ..++++|+.+... +-.++.+++...+.+
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~i 77 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKE--HTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHL 77 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTT--SEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCC--CeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEE
Confidence 57999999964 47899999998888 444 5688888865432 112345678889999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHhc------cC---CCccCCceEEEEeccCCc--hhHH--HHHHHHHHHHHHHcCCc
Q 005109 164 FFFLATYGDGEPTDNAARFYKWFTEK------EG---GEWLQKLKYGVFGLGNRQ--YEHF--NKIAKVVDEILANQGAK 230 (714)
Q Consensus 164 if~~sTyG~G~~pdna~~F~~~L~~~------~~---~~~l~~~~~aVFGlGds~--Y~~f--~~~~k~ld~~L~~lGa~ 230 (714)
||++|.| .+..|.-.+.|++++... .. ...|+|+++.++..+... |..+ .....-+...|.-+|++
T Consensus 78 V~~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~ 156 (196)
T 3lcm_A 78 IFIFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAIS 156 (196)
T ss_dssp EEEEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCC
T ss_pred EEECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCc
Confidence 9999999 999999999999998510 00 125899999998776665 4211 11113455556667998
Q ss_pred cccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 231 RLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 231 ~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
.+-....+..+...++...+|.+++.....+.+
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 157 PVKLTELTSIEKISDDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp CEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred eeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 776666655555677889999999877766655
|
| >3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=79.24 Aligned_cols=156 Identities=12% Similarity=0.046 Sum_probs=105.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcccc----ccchHHHHhhcCCCeEEEEEeCCCCCCCCchH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA----DEEDEYEEKLKKENIVFFFLATYGDGEPTDNA 179 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~----~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna 179 (714)
|++|+|++||..++...+++.+.+.+++.+ ..++++||.+.. .+-....+++...+.+||++|.| .+..|.-.
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g--~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~l 77 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHT--DRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLL 77 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCT--TTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHH
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCC--CeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHH
Confidence 578999999999875578999999887765 457888886432 22233457789999999999999 99999999
Q ss_pred HHHHHHHHhc-----cCCCccCCceEEEEeccCCc---hh-------HHHHHHHHHHHHHHHcCCccccccccccCCCC-
Q 005109 180 ARFYKWFTEK-----EGGEWLQKLKYGVFGLGNRQ---YE-------HFNKIAKVVDEILANQGAKRLVPVGLGDDDQC- 243 (714)
Q Consensus 180 ~~F~~~L~~~-----~~~~~l~~~~~aVFGlGds~---Y~-------~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~- 243 (714)
+.|++++... ..+..|+|+++.++...... |. ......+-+...+.-+|.+.+-+....+....
T Consensus 78 K~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~~~~g~~~~~ 157 (192)
T 3f2v_A 78 KQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTIDSNA 157 (192)
T ss_dssp HHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCEEEEC-----
T ss_pred HHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeEEEecccccc
Confidence 9999998510 11246899999988765444 32 12233334567777889997766555444321
Q ss_pred -----chhhHHHHHHHHHHHHHhh
Q 005109 244 -----IEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 244 -----~e~~f~~W~~~l~~~L~~~ 262 (714)
.++++++..++....|.+.
T Consensus 158 ~~~~~~~~~~~~~~~~y~~~l~~~ 181 (192)
T 3f2v_A 158 GYSEAARQEVERSARDYLAWLDAL 181 (192)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544
|
| >3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii} | Back alignment and structure |
|---|
Probab=97.47 E-value=2.3e-07 Score=92.00 Aligned_cols=124 Identities=10% Similarity=0.090 Sum_probs=92.3
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEe-cCccc---ccc---------chHHHHhhcCCCeEEEEEe
Q 005109 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVV-DIDDY---ADE---------EDEYEEKLKKENIVFFFLA 168 (714)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~-dl~~~---~~~---------~~~~~~~l~~~~~vif~~s 168 (714)
+++|+|+|||.. |+++.+|+.+++.+.+ + ..++++ |+.+. +.+ -.++.+++...+.+||++|
T Consensus 6 ~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g--~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP 82 (199)
T 3s2y_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE-G--IAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
Confidence 478999999987 8999999999998875 4 456777 77652 111 1123456788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc
Q 005109 169 TYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 233 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~ 233 (714)
+| +|..|...+.|++|+..... ..++++++++|+.+...+. ...+...+...|..+|+..+-
T Consensus 83 ~Y-~~s~p~~lK~~iD~l~~~~~-~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~ 144 (199)
T 3s2y_A 83 EY-NYSVPGVLKNAIDWLSRVSP-QPLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLN 144 (199)
Confidence 99 88999999999999962111 1589999999996433332 334567788888888988664
|
| >2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.8e-05 Score=75.47 Aligned_cols=149 Identities=12% Similarity=0.073 Sum_probs=102.9
Q ss_pred CCceEEEEEeCCC------chHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCC
Q 005109 103 GKQKVTIFFGTQT------GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT 176 (714)
Q Consensus 103 ~~~~v~I~YgSqt------Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p 176 (714)
...+|+|+.||.- +++..+|+.+.+.+.+.+ ..++++|+.+- .+-.++.+.+...+.+||++|.| .+..|
T Consensus 11 ~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g--~~v~~~dL~~~-~d~~~~~~~l~~AD~iV~~~P~y-~~s~p 86 (204)
T 2amj_A 11 GSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLG--HDVRIVRADSD-YDVKAEVQNFLWADVVIWQMPGW-WMGAP 86 (204)
T ss_dssp -CCEEEEEECCC------CHHHHHHHHHHHHHHHHTT--CEEEEEESSSC-CCHHHHHHHHHHCSEEEEEEECB-TTBCC
T ss_pred CCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcC--CEEEEEeCCcc-ccHHHHHHHHHhCCEEEEECCcc-ccCCC
Confidence 4578999999988 899999999999998764 56889999752 22334567889999999999999 99999
Q ss_pred chHHHHHHHHH--h------c------------cCCCccCCceEEEEeccCCchhHHH------------HHHHHHHHHH
Q 005109 177 DNAARFYKWFT--E------K------------EGGEWLQKLKYGVFGLGNRQYEHFN------------KIAKVVDEIL 224 (714)
Q Consensus 177 dna~~F~~~L~--~------~------------~~~~~l~~~~~aVFGlGds~Y~~f~------------~~~k~ld~~L 224 (714)
.-.+.|++++. . . .....++++++.++.........|. .+...+...|
T Consensus 87 a~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~~~l~~l~~~l 166 (204)
T 2amj_A 87 WTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKAN 166 (204)
T ss_dssp HHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHHHHHHHHHHHH
Confidence 99999999764 1 0 0123578999999876555322221 2223366778
Q ss_pred HHcCCccccccccccCCC--CchhhHHHHHHHH
Q 005109 225 ANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELV 255 (714)
Q Consensus 225 ~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l 255 (714)
.-+|++.+-+....+.+. ..++.++.+++.+
T Consensus 167 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (204)
T 2amj_A 167 QFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHL 199 (204)
T ss_dssp HHTTCEECCCEEECSTTTSCCTTTHHHHHHHHH
T ss_pred HHcCCeecceEEEeCCCCcHHHHHHHHHHHHHH
Confidence 888998775554433222 3444555554443
|
| >1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.5e-05 Score=81.18 Aligned_cols=157 Identities=13% Similarity=-0.017 Sum_probs=105.8
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCccccc---------------------------------
Q 005109 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD--------------------------------- 148 (714)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~--------------------------------- 148 (714)
|++|+|+|||.. |++..+|+.+.+.+++.+ ..|+++||.+...
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g--~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKG--WEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCC--CeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhccc
Confidence 679999999987 589999999999998765 5678888875431
Q ss_pred --cc-hHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc---c------CCCccCCceEEEEeccCCc---hhH-
Q 005109 149 --EE-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK---E------GGEWLQKLKYGVFGLGNRQ---YEH- 212 (714)
Q Consensus 149 --~~-~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~---~------~~~~l~~~~~aVFGlGds~---Y~~- 212 (714)
++ ....+++...+.+||++|.| .+..|.-.+.|++++... . +...|+++++.++...... |.+
T Consensus 80 ~~dd~~~~~~~l~~AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~ 158 (273)
T 1d4a_A 80 LSPDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQ 158 (273)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTT
T ss_pred CcHHHHHHHHHHHhCCEEEEECchh-hccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhccc
Confidence 01 11234578899999999999 999999999999998511 0 0135889998888654443 421
Q ss_pred -HH----HHHHHHH-HHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 213 -FN----KIAKVVD-EILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 213 -f~----~~~k~ld-~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
.+ .....+. ..|.-+|++.+-+...+......++..++|.++....+.++.
T Consensus 159 g~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~ 215 (273)
T 1d4a_A 159 GIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIW 215 (273)
T ss_dssp BTTCCHHHHHHHHHTTTTGGGTCEECCCEEETTGGGSCHHHHHHHHHHHHHHHTTGG
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCeeeeEEEEeccccCCHHHHHHHHHHHHHHHHHHH
Confidence 11 1122222 244567888765544433333345567778777777776654
|
| >3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.7e-05 Score=77.73 Aligned_cols=157 Identities=11% Similarity=0.118 Sum_probs=110.2
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCCeeEEecCccccc-----c------------------------c
Q 005109 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----E------------------------E 150 (714)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----~------------------------~ 150 (714)
|++|+|++||-. +++..+|+.+.+.+++.++...++++||.+++. + -
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVA 83 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHH
Confidence 679999999965 789999999999998875446788888865431 0 1
Q ss_pred hHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc-------c--CCCccCCceEEEEeccCCchhH-----HHHH
Q 005109 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK-------E--GGEWLQKLKYGVFGLGNRQYEH-----FNKI 216 (714)
Q Consensus 151 ~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~-------~--~~~~l~~~~~aVFGlGds~Y~~-----f~~~ 216 (714)
.++.+++...+.+||++|.| .+..|.-.+.|++++... . ....|+++++.++......|.+ +...
T Consensus 84 ~~~~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 162 (211)
T 3p0r_A 84 DKYLNQFLEADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMA 162 (211)
T ss_dssp HHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBS
T ss_pred HHHHHHHHhCCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHH
Confidence 12345678899999999999 999999999999998511 0 1124789998888753334532 2334
Q ss_pred HHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhh
Q 005109 217 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 217 ~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 262 (714)
...+...|.-+|++.+-.+..+..+. .++.-++|.++....+.++
T Consensus 163 ~~~l~~~l~~~G~~~v~~i~~~g~~~-~~~~~~~~l~~a~~~~~~~ 207 (211)
T 3p0r_A 163 VKYVASMMGFFGATNMETVVIEGHNQ-FPDKAEEIITAGLEEAAKV 207 (211)
T ss_dssp HHHHHHHHHHTTCCSCEEEEEECTTT-SGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEecccc-CchHHHHHHHHHHHHHHHH
Confidence 46677788888998765543333333 2456778887766655543
|
| >3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ... | Back alignment and structure |
|---|
Probab=98.07 E-value=3.6e-05 Score=77.76 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=108.8
Q ss_pred ceEEEEEeCCCc--hHHHHHHHHHHHHHhhcCCCeeEEecCccccc----------------------------------
Q 005109 105 QKVTIFFGTQTG--TAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------------------- 148 (714)
Q Consensus 105 ~~v~I~YgSqtG--tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------------------- 148 (714)
|+|+|++||... ++..+|+.+.+.+++.+ ..++++||.+...
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g--~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 79 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQG--CTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSL 79 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHT--CEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCB
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCC--CEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCC
Confidence 689999999764 49999999999998875 5688888865321
Q ss_pred -cc-hHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc------c---CCCccCCceEEEEeccCCc---hhH--
Q 005109 149 -EE-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK------E---GGEWLQKLKYGVFGLGNRQ---YEH-- 212 (714)
Q Consensus 149 -~~-~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~------~---~~~~l~~~~~aVFGlGds~---Y~~-- 212 (714)
+| ....+++...+.+||++|.| .+..|.-.+.|++++... . ....|+|+++.++...... |..
T Consensus 80 ~dd~~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~g 158 (228)
T 3tem_A 80 ASDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTG 158 (228)
T ss_dssp CHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTTS
T ss_pred cHHHHHHHHHHHhCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhcc
Confidence 11 11234578899999999999 999999999999998510 0 0135899999888554433 421
Q ss_pred HHHHHHHH----HH-HHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhhC
Q 005109 213 FNKIAKVV----DE-ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLR 264 (714)
Q Consensus 213 f~~~~k~l----d~-~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~ 264 (714)
++...+.+ .+ .+.-+|.+.+-+....+.+...++...+|.++....|..+..
T Consensus 159 ~~~~~~~~l~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 215 (228)
T 3tem_A 159 VNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWK 215 (228)
T ss_dssp TTCCHHHHHHHHHCCCCCTTTCEECCCEEECCTTTSCHHHHHHHHHHHHHHHHTGGG
T ss_pred ccCCHHHHHHHHHHHHHHhCCceEcCeEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 22211221 11 222357776666656666666788899999998888887653
|
| >3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00017 Score=70.76 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=88.5
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCcccc---ccc--------hHHHHhhcCCCeEEEEEeCC
Q 005109 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYA---DEE--------DEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~---~~~--------~~~~~~l~~~~~vif~~sTy 170 (714)
+++|.|+.||. ...+.++|+.+++.+.. ...++++|+.+.. .+. ..+.+.+...+.+||++|.|
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~~---~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY 78 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAEG---RLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY 78 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHTT---TEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh
Confidence 57899999994 45678899888776643 2567788876532 111 11235678899999999999
Q ss_pred CCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 171 GDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
+|..|.-.+.|++|+........+.++.++++|.+-..+... .+...+...|..+|+..+
T Consensus 79 -n~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~ 138 (190)
T 3u7r_A 79 -NRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMM 138 (190)
T ss_dssp -TTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEEC
T ss_pred -cccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEc
Confidence 999999999999999622223468999999998644343322 234567778888898754
|
| >3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00026 Score=71.25 Aligned_cols=160 Identities=11% Similarity=0.046 Sum_probs=111.7
Q ss_pred CCceEEEEEeCC-----CchHHHHHHHHHHHHHhhcCCC-eeEEecCcccccc---------------------------
Q 005109 103 GKQKVTIFFGTQ-----TGTAEGFAKALADEARARYDKA-IFKVVDIDDYADE--------------------------- 149 (714)
Q Consensus 103 ~~~~v~I~YgSq-----tGtae~~A~~la~~l~~~~~~~-~v~v~dl~~~~~~--------------------------- 149 (714)
.|++|+|+.||- .+++..+++.+.+.+++.++.. .++++||.+++..
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVT 82 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHH
Confidence 378999999995 5889999999999998876556 7888988654310
Q ss_pred --chHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc-------cCC--Ccc-CCceEEEEeccCCch------h
Q 005109 150 --EDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK-------EGG--EWL-QKLKYGVFGLGNRQY------E 211 (714)
Q Consensus 150 --~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~-------~~~--~~l-~~~~~aVFGlGds~Y------~ 211 (714)
-.++.+++...+.+||++|.| .+..|.-.+.|++|+... ..+ ..+ ++++..|+......| .
T Consensus 83 d~~~~l~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~ 161 (223)
T 3u7i_A 83 ERMSEILQQFKSANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYT 161 (223)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHH
T ss_pred HHHHHHHHHHHhCCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccc
Confidence 012345678889999999999 999999999999998611 001 135 789988886533334 2
Q ss_pred HHHHHHHHHHHHHHHcCCccccccccccCC-CCchhhHHHHHHHHHHHHHhhh
Q 005109 212 HFNKIAKVVDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 212 ~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~-~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
.+......+...|.-+|++.+-.+.....+ ...++.++++.+++-...++..
T Consensus 162 ~~~~~~~~l~~~l~~~G~~~~~~i~~~g~~~~~~~~~~~~a~~~~~~~~~~f~ 214 (223)
T 3u7i_A 162 DVEYSHKYLKAMFNFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEAASRLA 214 (223)
T ss_dssp HTCHHHHHHHHHHHHHTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCceeEEEEEcCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 234455667788888899876443322222 2357778888887766555543
|
| >3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00014 Score=70.54 Aligned_cols=149 Identities=8% Similarity=-0.009 Sum_probs=102.3
Q ss_pred ceEEEEEeCCC---chHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 105 QKVTIFFGTQT---GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 105 ~~v~I~YgSqt---Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
|+|+|++||-. +.+..+++ ++.+.. ..++++||.+ ..|-.+..+++...+.+||++|.| .+..|.-.+.
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~----~~~~~~--~~v~v~dL~~-~~D~~~~~~~l~~aD~iV~~~P~y-~~~~pa~lK~ 72 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFK----AAIENF--SNVTWHPLVA-DFNVEQEQSLLLQNDRIILEFPLY-WYSAPALLKQ 72 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHH----HHHTTC--TTEEEEECCT-TCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHH
T ss_pred CeEEEEEcCCCcccCHHHHHHH----HHHhcC--CCEEEEECCC-cccHHHHHHHHHhCCEEEEECChh-hccCCHHHHH
Confidence 47999999975 44444433 333322 3488999986 333344567899999999999999 9999999999
Q ss_pred HHHHHHh----ccCCCccCCceEEEEeccCCchhHH----------HHHHHHHHHHHHHcCCccccccccccCCCCchhh
Q 005109 182 FYKWFTE----KEGGEWLQKLKYGVFGLGNRQYEHF----------NKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD 247 (714)
Q Consensus 182 F~~~L~~----~~~~~~l~~~~~aVFGlGds~Y~~f----------~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~ 247 (714)
|++++.. -.....|+|+++.++.......+.| ....+-+...+.-+|.+-+-+......+...+++
T Consensus 73 ~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~~~~~~ 152 (177)
T 3ha2_A 73 WMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLYLEPDA 152 (177)
T ss_dssp HHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGGSCHHH
T ss_pred HHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCCCCHHH
Confidence 9998751 0112358999998886654442222 2333444566677899887666655555566888
Q ss_pred HHHHHHHHHHHHHh
Q 005109 248 FSAWRELVWPELDN 261 (714)
Q Consensus 248 f~~W~~~l~~~L~~ 261 (714)
.++|.++....|.+
T Consensus 153 ~~~~l~~~~~~l~~ 166 (177)
T 3ha2_A 153 QQRLLVAYQQYATN 166 (177)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcc
Confidence 99999888777764
|
| >3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00014 Score=71.55 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=101.8
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeE-EecCccccc-------------cchHHHHhhcCCCeEEEEE
Q 005109 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFK-VVDIDDYAD-------------EEDEYEEKLKKENIVFFFL 167 (714)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~-------------~~~~~~~~l~~~~~vif~~ 167 (714)
+++|+++.||- .+++..+|+.+.+.+ ..+ ..++ ++|+.+... +-.++.+++...+.+||++
T Consensus 4 ~mkil~I~GS~r~~s~t~~l~~~~~~~~-~~g--~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~s 80 (193)
T 3svl_A 4 KLQVVTLLGSLRKGSFNGMVARTLPKIA-PAS--MEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVT 80 (193)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHGGGTS-CTT--EEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEE
T ss_pred CCEEEEEEccCCCCCHHHHHHHHHHHHc-cCC--CEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEe
Confidence 57899999995 578888888776533 222 4566 777765422 1112456788899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccc-c-cc------ccc
Q 005109 168 ATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV-P-VG------LGD 239 (714)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~-~-~g------~gD 239 (714)
|+| +|..|...+.|++|+... ....+.+++.++++..-..+... .+...+...|..+|+..+- | .. .-|
T Consensus 81 P~y-~~~~~~~lK~~iD~~~~~-~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~~~~~~~~~~~~f~ 157 (193)
T 3svl_A 81 PEY-NYSVPGGLKNAIDWLSRL-PDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVD 157 (193)
T ss_dssp CCB-TTBCCHHHHHHHHHHHTS-TTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCSSCEEETTGGGGEE
T ss_pred ccc-CCCCCHHHHHHHHHHhhc-CccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCCCeEeecchhhhcC
Confidence 999 999999999999999721 12458999999998622222222 3557788888899998652 1 11 112
Q ss_pred CCCC--chhhHHHHHHHHHHHHHhhh
Q 005109 240 DDQC--IEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 240 ~~~~--~e~~f~~W~~~l~~~L~~~~ 263 (714)
++.+ .+++..+..+.+...+....
T Consensus 158 ~~~g~l~d~~~~~~l~~~~~~~~~~~ 183 (193)
T 3svl_A 158 PQTGEVIDQGTLDHLTGQLTAFGEFI 183 (193)
T ss_dssp TTTTEECCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 2211 34556666666666665554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00066 Score=74.61 Aligned_cols=156 Identities=10% Similarity=0.059 Sum_probs=104.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcc----ccccchHHHHhhcCCCeEEEEEeCCCCCCCCchH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD----YADEEDEYEEKLKKENIVFFFLATYGDGEPTDNA 179 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~----~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna 179 (714)
+++|+|++||-.++...+.+.+.+.+... ..++++||.+ +..+-....+.+...+.+||++|.| .+..|.-.
T Consensus 236 ~mkiLvi~gspr~~ss~~n~~l~~~~~~~---~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~y-w~~~Pa~l 311 (413)
T 3l9w_A 236 SGMILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLL 311 (413)
T ss_dssp -CCEEEEECCSCGGGCSHHHHHHHHHHTS---SSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHH
T ss_pred CCCEEEEEECCCcchHHHHHHHHHHHhcC---CCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchh-hccCCHHH
Confidence 47899999998887666888888887653 3578887732 2233334457789999999999999 99999999
Q ss_pred HHHHHHHHh-----ccCCCccCCceEEEEeccCCchhHH--------HHHHHHHHHHHHHcCCccccccccccCCCCchh
Q 005109 180 ARFYKWFTE-----KEGGEWLQKLKYGVFGLGNRQYEHF--------NKIAKVVDEILANQGAKRLVPVGLGDDDQCIED 246 (714)
Q Consensus 180 ~~F~~~L~~-----~~~~~~l~~~~~aVFGlGds~Y~~f--------~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~ 246 (714)
+.|++++.. ...+..|+|+++.++.......+.| ...-.-+...|.-+|++-+-+........-.++
T Consensus 312 K~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g~~~~~d~ 391 (413)
T 3l9w_A 312 KLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDE 391 (413)
T ss_dssp HHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECCSTTCCHH
T ss_pred HHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcCCCCCCHH
Confidence 999999851 1122358999988775432222222 223355666777789987655544433333456
Q ss_pred hHHHHHHHHHHHHHhhh
Q 005109 247 DFSAWRELVWPELDNLL 263 (714)
Q Consensus 247 ~f~~W~~~l~~~L~~~~ 263 (714)
+..++.++....|..+.
T Consensus 392 ~~~~~~~~~~~~L~~~~ 408 (413)
T 3l9w_A 392 TLEGQARHYKQRLLEWQ 408 (413)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677666666666554
|
| >4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0039 Score=64.69 Aligned_cols=158 Identities=15% Similarity=0.090 Sum_probs=105.0
Q ss_pred CCceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc-------------------------------
Q 005109 103 GKQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE------------------------------- 149 (714)
Q Consensus 103 ~~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~------------------------------- 149 (714)
..|||+|+||+- .+.+..+++.+.+.+++.| ..|+++||-+...+
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G--~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAG--HEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGT 98 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTC
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCC--CeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCC
Confidence 457899999984 4668889999999998876 56889998432211
Q ss_pred ---c-hHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHh------cc-----------CCCccCCceEEEEeccCC
Q 005109 150 ---E-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE------KE-----------GGEWLQKLKYGVFGLGNR 208 (714)
Q Consensus 150 ---~-~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~------~~-----------~~~~l~~~~~aVFGlGds 208 (714)
| ....+.+...+.+||+.|.| .+..|.-.+.|++.+.. .. ....|+|+++.++-.-+.
T Consensus 99 ~~~dv~~~~~~l~~aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~ 177 (280)
T 4gi5_A 99 QSADIVAEQEKLLWADTVIFQFPLW-WFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGG 177 (280)
T ss_dssp SCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSS
T ss_pred CcHHHHHHHHHHHhCCEEEEEeccc-cccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCC
Confidence 0 11234577889999999999 99999999999998750 00 112477888776643333
Q ss_pred chhHHHHH--HHHHHHHHH--------HcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 209 QYEHFNKI--AKVVDEILA--------NQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 209 ~Y~~f~~~--~k~ld~~L~--------~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
..+.|... ...+++.|. -.|.+.+-|....+.+...++++++|.+++-..|..+.
T Consensus 178 ~~~~y~~~g~~~~~~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 242 (280)
T 4gi5_A 178 WAEHYSPRGINGPIDDILFPIQHGMLFYPGFEVLPPLVFYRTDKTDAGQFADQCAALAERLDTLW 242 (280)
T ss_dssp CGGGGSTTBTTCCHHHHTHHHHCCCCCTTTCEECCCEEECSGGGCCHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHccccccCCCHHHHHHHHHHHHHHcCCCeECCcEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 32222111 112333332 13777666666656666678899999999888888765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 714 | ||||
| d1ja1a1 | 279 | b.43.4.1 (A:240-518) NADPH-cytochrome p450 reducta | 1e-86 | |
| d1f20a1 | 270 | b.43.4.1 (A:963-1232) Neuronal nitric-oxide syntha | 3e-67 | |
| d1ja1a3 | 160 | c.25.1.4 (A:519-678) NADPH-cytochrome p450 reducta | 5e-59 | |
| d1ddga1 | 221 | b.43.4.1 (A:226-446) Sulfite reductase flavoprotei | 2e-51 | |
| d1f20a2 | 165 | c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth | 3e-47 | |
| d1ddga2 | 153 | c.25.1.4 (A:447-599) Sulfite reductase flavoprotei | 2e-45 | |
| d1ja1a2 | 177 | c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductas | 3e-44 | |
| d1tlla2 | 202 | c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FM | 1e-38 | |
| d1fnda2 | 160 | c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo | 5e-36 | |
| d1jb9a2 | 154 | c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo | 7e-35 | |
| d1bvyf_ | 152 | c.23.5.1 (F:) FMN-binding domain of the cytochrome | 2e-34 | |
| d1ykga1 | 146 | c.23.5.2 (A:63-208) Sulfite reductase alpha-compon | 2e-34 | |
| d2bmwa2 | 162 | c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo | 4e-29 | |
| d1f4pa_ | 147 | c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [ | 8e-27 | |
| d1yoba1 | 179 | c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelan | 2e-26 | |
| d2fcra_ | 173 | c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: | 1e-25 | |
| d1czna_ | 169 | c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus | 5e-22 | |
| d1ag9a_ | 175 | c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: | 5e-20 | |
| d1rlja_ | 135 | c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis | 8e-19 | |
| d1fuea_ | 163 | c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [Tax | 2e-18 | |
| d1oboa_ | 169 | c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7 | 4e-18 | |
| d2fz5a1 | 137 | c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdeni | 2e-15 | |
| d1vmea1 | 148 | c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, | 1e-14 | |
| d1a8pa2 | 158 | c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo | 1e-12 | |
| d1tvca2 | 141 | c.25.1.2 (A:111-251) Methane monooxygenase compone | 2e-12 | |
| d2cnda2 | 146 | c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea | 3e-12 | |
| d1gvha3 | 143 | c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d | 2e-11 | |
| d5nula_ | 138 | c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii | 3e-11 | |
| d1cqxa3 | 142 | c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d | 4e-11 | |
| d1qfja2 | 135 | c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase | 3e-10 | |
| d1krha2 | 133 | c.25.1.2 (A:206-338) Benzoate dioxygenase reductas | 7e-10 | |
| d1e5da1 | 152 | c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreduct | 7e-10 | |
| d1ycga1 | 149 | c.23.5.1 (A:251-399) Nitric oxide reductase C-term | 9e-09 | |
| d1umka2 | 147 | c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma | 2e-08 | |
| d2piaa2 | 120 | c.25.1.2 (A:104-223) Phthalate dioxygenase reducta | 3e-08 | |
| d1jb9a1 | 157 | b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxi | 3e-07 | |
| d1fdra2 | 148 | c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo | 6e-07 | |
| d1fnda1 | 136 | b.43.4.2 (A:19-154) Ferredoxin reductase (flavodox | 1e-04 | |
| d2bmwa1 | 133 | b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi | 1e-04 | |
| d2bmwa1 | 133 | b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi | 6e-04 | |
| d1ep3b2 | 160 | c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase | 0.002 |
| >d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 271 bits (694), Expect = 1e-86
Identities = 93/286 (32%), Positives = 162/286 (56%), Gaps = 14/286 (4%)
Query: 278 AAISEYRVVFYDNADAS---VGE--KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDR 332
++I +Y +V +++ D + GE + N +DA++P + V ++L+ + +R
Sbjct: 1 SSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGT-ER 59
Query: 333 SCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPL 392
HLE DI+ + + YE+GDHV VY N S V + +LG D SL+ E+
Sbjct: 60 HLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKK 119
Query: 393 GKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG--K 450
P P + RTALT Y D+ + P+ + L LA +AS+P+E + L +AS +G K
Sbjct: 120 -----HPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGK 174
Query: 451 DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVT 510
+ Y W+V ++R +L ++ ++PS +PP+ ++PRLQ RYY+I+SS +V P+ +H+
Sbjct: 175 ELYLSWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYAIASSSKVHPNSVHIC 233
Query: 511 CALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 556
V + +GRV+KG+ ++W++ P ++ + P+FVR+S F
Sbjct: 234 AVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQF 279
|
| >d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 270 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 220 bits (561), Expect = 3e-67
Identities = 80/283 (28%), Positives = 125/283 (44%), Gaps = 27/283 (9%)
Query: 281 SEYRVVFYDNA-DASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEF 339
+++R+ + A D + G + + + R+ L +P S RS +
Sbjct: 5 NKFRLTYVAEAPDLTQGLSNVHKKR---------VSAARLLSRQNLQSPKSSRSTIFVRL 55
Query: 340 DIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFSLHTDKEDGTPLGKST 396
G L Y+ GDH+GV+ N + V + L +P + + +E T LG +
Sbjct: 56 HTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVIS 115
Query: 397 ---LPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEY 453
PPC++ A Y D+ + P L A+ A++ E RL L+ G EY
Sbjct: 116 NWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEY 173
Query: 454 AQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCAL 513
+W +++EV+ EFPS + P + LQPRYYSISSSP + P +H+T A+
Sbjct: 174 EEWKWGKNPTMVEVLEEFPSIQMPAT-LLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAI 232
Query: 514 VYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 554
V T G VH G+CS+W+ P FVR +
Sbjct: 233 VSYHTRDGEGPVHHGVCSSWLNRIQA------DDVVPCFVRGA 269
|
| >d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 194 bits (494), Expect = 5e-59
Identities = 77/159 (48%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Query: 557 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE 616
+LP + P+IM+GPGTG+APF GF+QER L+E G E+G +LL++GCR DY+Y +E
Sbjct: 1 RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREE 60
Query: 617 LNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMAR 675
L F + GAL+QL VAFSRE K YVQH + +W ++ E GA++YV GDA++MA+
Sbjct: 61 LARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAK 120
Query: 676 DVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
DV T + IV E G ++ ++A VK L GRY +VW
Sbjct: 121 DVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVW 159
|
| >d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 221 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Score = 176 bits (446), Expect = 2e-51
Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 35/250 (14%)
Query: 309 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 368
Y P ++++V +++ +S++ H+E D+ +GL Y+ GD +GV+ +N V+E
Sbjct: 6 YSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEL 65
Query: 369 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLAL 428
+ LL L D L AL + +L + +
Sbjct: 66 VELLWLKGDEPV-----------------TVEGKTLPLNEALQWHFELTVNTAN----IV 104
Query: 429 AAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPR 488
+A+ L + A YA + + M F A+ + P
Sbjct: 105 ENYATLTRSETLLPLVGDKAKLQHYA------ATTPIVDMVRFSPAQLDAEALINLLRP- 157
Query: 489 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 548
L PR YSI+SS + +HVT +V GR G S+++ + + +
Sbjct: 158 LTPRLYSIASSQAEVENEVHVTVGVV-RYDVEGRARAGGASSFLADRVE-----EEGEVR 211
Query: 549 IFVRQS-NFK 557
+F+ + NF+
Sbjct: 212 VFIEHNDNFR 221
|
| >d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 162 bits (411), Expect = 3e-47
Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 5/163 (3%)
Query: 556 FKLPADAKVPIIMIGPGTGLAPFRGFLQER-FALQEAGAELGPSLLFFGCRNRKMDYIYE 614
F LP + +VP I++GPGTG+APFR F Q+R F +Q G P +L FGCR K+D+IY
Sbjct: 2 FHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYR 61
Query: 615 DELNNFVQSGALSQLIVAFSRE--GPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAK 671
+E G +L A+SRE P K + + ++ L +G ++YVCGD
Sbjct: 62 EETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVT 121
Query: 672 SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
MA DV + + I+ +QG L A + L+ RY D++
Sbjct: 122 -MAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 163
|
| >d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Score = 156 bits (396), Expect = 2e-45
Identities = 63/157 (40%), Positives = 103/157 (65%), Gaps = 4/157 (2%)
Query: 558 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL 617
LPA+ + P+IMIGPGTG+APFR F+Q+R A + G FFG + D++Y+ E
Sbjct: 1 LPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWL----FFGNPHFTEDFLYQVEW 56
Query: 618 NNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDV 677
+V+ G L+++ +A+SR+ K YVQ K+ E+ +++W +++GA++YVCGDA MA+DV
Sbjct: 57 QRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDV 116
Query: 678 HRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
+ L ++ E G +D+ A+ + L++ RY RDV+
Sbjct: 117 EQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153
|
| >d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: NADPH-cytochrome p450 reductase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 154 bits (391), Expect = 3e-44
Identities = 66/161 (40%), Positives = 96/161 (59%), Gaps = 5/161 (3%)
Query: 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK 158
++ + + +F+G+QTGTAE FA L+ +A + D ++Y D D
Sbjct: 10 KMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRG--MSADPEEY-DLADLSSLPEI 66
Query: 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAK 218
+++V F +ATYG+G+PTDNA FY W E + L +K+ VFGLGN+ YEHFN + K
Sbjct: 67 DKSLVVFCMATYGEGDPTDNAQDFYDWLQETD--VDLTGVKFAVFGLGNKTYEHFNAMGK 124
Query: 219 VVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 259
VD+ L GA+R+ +GLGDDD +E+DF WRE WP +
Sbjct: 125 YVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAV 165
|
| >d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Nitric oxide (NO) synthase FMN domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 139 bits (351), Expect = 1e-38
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 49/205 (23%)
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIV 163
+ K TI + T+TG ++ +AK L + + +D K + +++Y L+ E +V
Sbjct: 3 RVKATILYATETGKSQAYAKTLCEIFKHAFDA---KAMSMEEYDIVH------LEHEALV 53
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEK---------------------------------- 189
+T+G+G+P +N +F E
Sbjct: 54 LVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGP 113
Query: 190 ------EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC 243
E L +++ VFGLG+R Y HF VD +L G +R++ + GD+
Sbjct: 114 DLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCG 173
Query: 244 IEDDFSAWRELVWPELDNLLRDDDD 268
E+ F W + V+ ++ DD
Sbjct: 174 QEEAFRTWAKKVFKAACDVFCVGDD 198
|
| >d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 131 bits (329), Expect = 5e-36
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 557 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE 616
+P D IIM+G GTG+APFR FL + F + + F +Y++E
Sbjct: 2 LMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEE 61
Query: 617 LNNFVQSGALSQ-LIVAFSRE----GPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDA 670
+ + L A SRE K Y+Q +M + + ++W ML + Y+Y+CG
Sbjct: 62 FEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCG-L 120
Query: 671 KSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
K M + + + ++ +G + L+ ++ +V+
Sbjct: 121 KGMEKGIDDIMVSLAAAEG----IDWIEYKRQLKKAEQWNVEVY 160
|
| >d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Maize (Zea mays), root isoform [TaxId: 4577]
Score = 127 bits (320), Expect = 7e-35
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 561 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 620
D IMI GTG+APFRG+L+ F G F +Y++E ++
Sbjct: 1 DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSY 60
Query: 621 VQSGALS-QLIVAFSREGPT----KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR 675
++ + + A SRE K YVQ K+ E S +I+ +L GA++Y CG M
Sbjct: 61 LKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKG-MMP 119
Query: 676 DVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
+ TL + + +G + + L+ ++ +V+
Sbjct: 120 GIQDTLKKVAERRG----ESWDQKLAQLKKNKQWHVEVY 154
|
| >d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: FMN-binding domain of the cytochrome P450bm-3 species: Bacillus megaterium [TaxId: 1404]
Score = 126 bits (317), Expect = 2e-34
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
+ + +G+ GTAEG A+ LAD A ++ D + L +E V
Sbjct: 3 PLLVLYGSNMGTAEGTARDLADIAMSK---------GFAPQVATLDSHAGNLPREGAVLI 53
Query: 166 FLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYE-HFNKIAKVVDEIL 224
A+Y P DNA +F W + + ++ ++Y VFG G++ + + K+ +DE L
Sbjct: 54 VTASYNGHPP-DNAKQFVDWLDQASA-DEVKGVRYSVFGCGDKNWATTYQKVPAFIDETL 111
Query: 225 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 259
A +GA+ + G D E + WRE +W ++
Sbjct: 112 AAKGAENIADRGEADASDDFEGTYEEWREHMWSDV 146
|
| >d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Sulfite reductase alpha-component CysJ N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 126 bits (316), Expect = 2e-34
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFF 166
+TI +QTG A A+AL D+ A K+V+ DY ++ E ++
Sbjct: 1 ITIISASQTGNARRVAEALRDDLLAAKLN--VKLVNAGDYKFKQIASE------KLLIVV 52
Query: 167 LATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILAN 226
+T G+GEP + A +K+ K+ L+ + VF LG+ YE F + K D LA
Sbjct: 53 TSTQGEGEPPEEAVALHKFLFSKKAP-KLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAE 111
Query: 227 QGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 259
G +RL+ D + + S WR V L
Sbjct: 112 LGGERLLDRVDADVEY--QAAASEWRARVVDAL 142
|
| >d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Score = 111 bits (278), Expect = 4e-29
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 15/167 (8%)
Query: 558 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-----GPSLLFFGCRNRKMDYI 612
LP D + +IM+ GTG+ P R +L F E A G S L FG
Sbjct: 1 LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILY 60
Query: 613 YEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE-----GAYLYVC 667
E+ + +L A SRE + + + ++ ++ + L + + Y+C
Sbjct: 61 KEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYIC 120
Query: 668 GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714
G M + L ++G K+L+ GR+ + +
Sbjct: 121 GPPP-MEEGIDAALSAAAAKEG----VTWSDYQKDLKKAGRWHVETY 162
|
| >d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Desulfovibrio vulgaris [TaxId: 881]
Score = 104 bits (260), Expect = 8e-27
Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 14/157 (8%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K I +G+ TG E A+ +A E ++D E + ++V
Sbjct: 2 KALIVYGSTTGNTEYTAETIARELADAG-------YEVDSRDAASVEAGGLFEGFDLVLL 54
Query: 166 FLATYGD--GEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 223
+T+GD E D+ + E Q K FG G+ +E+F ++E
Sbjct: 55 GCSTWGDDSIELQDDFIPLFDSLEET----GAQGRKVACFGCGDSSWEYFCGAVDAIEEK 110
Query: 224 LANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 259
L N GA+ + D D + DD W V +
Sbjct: 111 LKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 147
|
| >d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Azotobacter vinelandii [TaxId: 354]
Score = 103 bits (259), Expect = 2e-26
Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 38/183 (20%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ +FFG+ TG AK++ + ++++ + E+ + +
Sbjct: 2 KIGLFFGSNTGKTRKVAKSIKKRFDDET---MSDALNVNRVSAEDF------AQYQFLIL 52
Query: 166 FLATYGDGEPTDNAARFYKWFTEKE----GGEWLQKLKYGVFGLGNRQY--EHFNKIAKV 219
T G+GE ++ E+ G +FGLG++ E++
Sbjct: 53 GTPTLGEGELPGLSSDAENESWEEFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGE 112
Query: 220 VDEILANQGAKRLVP-------------------VGLGDDD----QCIEDDFSAWRELVW 256
+ ++GAK + VGL D ++ +AW +
Sbjct: 113 LYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLDNQSGKTDERVAAWLAQIA 172
Query: 257 PEL 259
PE
Sbjct: 173 PEF 175
|
| >d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Chondrus crispus [TaxId: 2769]
Score = 101 bits (253), Expect = 1e-25
Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 35/180 (19%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ IFF T TG A + A+ D +D+DD + LK +++F
Sbjct: 1 KIGIFFSTSTGNTTEVADFIGKTLGAKAD----APIDVDD-----VTDPQALKDYDLLFL 51
Query: 166 FLATYGDGEPTDNAARFYKWFTEKEGGE-WLQKLKYGVFGLGNRQ--YEHFNKIAKVVDE 222
T+ G T+ + + F + E ++ L +FGLG+ + ++F + + +
Sbjct: 52 GAPTWNTGADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHD 111
Query: 223 ILANQGAK---------------------RLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 259
A QGAK + + + L + +E + W E V E
Sbjct: 112 CFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMVNDQIPMEKRVAGWVEAVVSET 171
|
| >d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Synechococcus elongatus PCC 7942 [TaxId: 1140]
Score = 91.3 bits (226), Expect = 5e-22
Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 36/178 (20%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ +F+GTQTG + A+++ E +VD++D A+ + + +
Sbjct: 2 KIGLFYGTQTGVTQTIAESIQQEFGGES------IVDLNDIANADASDLN---AYDYLII 52
Query: 166 FLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILA 225
T+ GE + Y +K+ Y G ++F +++E ++
Sbjct: 53 GCPTWNVGELQSDWEGIYDDLDSVNFQ--GKKVAYFGAGDQVGYSDNFQDAMGILEEKIS 110
Query: 226 NQGAKRLVP-------------------VGLGDDDQCIEDDFS-----AWRELVWPEL 259
+ G++ + VGL D+ + D + W + E
Sbjct: 111 SLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDN-QPDLTKNRIKTWVSQLKSEF 167
|
| >d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Escherichia coli [TaxId: 562]
Score = 85.9 bits (212), Expect = 5e-20
Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 38/184 (20%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
IFFG+ TG E AK + + + V DI + E+ E +I+
Sbjct: 2 ITGIFFGSDTGNTENIAKMIQKQLGK----DVADVHDIAKSSKEDLE------AYDILLL 51
Query: 166 FLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILA 225
+ T+ GE + F+ E + + G E+F + +I+
Sbjct: 52 GIPTWYYGEAQCDWDDFFPTLEEIDFNGK--LVALFGCGDQEDYAEYFCDALGTIRDIIE 109
Query: 226 NQGAKRLVP--------------------VGLGDDD----QCIEDDFSAWRELVWPE--L 259
+GA + VGL D+ + + W + + E L
Sbjct: 110 PRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELHL 169
Query: 260 DNLL 263
D +L
Sbjct: 170 DEIL 173
|
| >d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavoprotein NrdI domain: Flavoprotein NrdI species: Bacillus subtilis [TaxId: 1423]
Score = 81.1 bits (200), Expect = 8e-19
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 34/155 (21%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
V I F ++TG + F + + + +E +
Sbjct: 10 MVQIIFDSKTGNVQRFVNKTGFQ--------------------QIRKVDEMDHVDTPFVL 49
Query: 166 FLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEIL 224
T G+ + F E L GV GN+ + ++F K A +
Sbjct: 50 VTYTTNFGQVPASTQSFL---------EKYAHLLLGVAASGNKVWGDNFAKSADTISRQY 100
Query: 225 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 259
+ G D + F+ E V +
Sbjct: 101 QVPILHKFELSGTSKD----VELFTQEVERVVTKS 131
|
| >d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Helicobacter pylori [TaxId: 210]
Score = 80.9 bits (199), Expect = 2e-18
Identities = 31/176 (17%), Positives = 53/176 (30%), Gaps = 39/176 (22%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ IFFGT +G AE A+ ++ +VVD+ + +E+ V
Sbjct: 2 KIGIFFGTDSGNAEAIAEKISKAIGN------AEVVDVAKAS------KEQFNGFTKVIL 49
Query: 166 FLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILA 225
T G G+ + F G+ GLG++ +
Sbjct: 50 VAPTAGAGDLQTDWEDFLGTLEA----SDFANKTIGLVGLGDQDTYSETFAEGIFHIYEK 105
Query: 226 NQGAKRLVP-------------------VGLGDDDQC----IEDDFSAWRELVWPE 258
+ K + VGL D+ ++ + W E V
Sbjct: 106 AKAGKVVGQTSTDGYHFAASKAVEGGKFVGLVIDEDNQDDLTDERIAKWVEQVRGS 161
|
| >d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Anabaena, pcc 7119 and 7120 [TaxId: 1163]
Score = 80.1 bits (197), Expect = 4e-18
Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 35/177 (19%)
Query: 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFF 165
K+ +F+GTQTG E A+ + DE + + D+ + L +
Sbjct: 3 KIGLFYGTQTGKTESVAEIIRDEFGN----DVVTLHDVSQAEVTD------LNDYQYLII 52
Query: 166 FLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILA 225
T GE + Y + + + + Y G ++F +++E ++
Sbjct: 53 GCPTLNIGELQSDWEGLYSELDDVDF--NGKLVAYFGTGDQIGYADNFQDAIGILEEKIS 110
Query: 226 NQGAKRLVP-------------------VGLGDDD----QCIEDDFSAWRELVWPEL 259
+G K + VGL D+ +D +W + E
Sbjct: 111 QRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEF 167
|
| >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Megasphaera elsdenii [TaxId: 907]
Score = 71.7 bits (175), Expect = 2e-15
Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 21/144 (14%)
Query: 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFF 166
V I + + TG E A + +A + D + + ++++
Sbjct: 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFE--------DTNVDDVASKDVILLG 53
Query: 167 LATYGDGE-PTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILA 225
G E F+ K G K G+FG + +
Sbjct: 54 CPAMGSEELEDSVVEPFFTDLAPKLKG-----KKVGLFGSYGWGSGEW---MDAWKQRTE 105
Query: 226 NQGAKRLVPVGLG----DDDQCIE 245
+ GA + + + +C E
Sbjct: 106 DTGATVIGTAIVNEMPDNAPECKE 129
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 69.9 bits (170), Expect = 1e-14
Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 13/155 (8%)
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIV 163
K KVT+ + + G E K D + + + ++ + + + +
Sbjct: 3 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEIL-KDIPDSEAL 61
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 223
F ++TY + + + VFG + + E+
Sbjct: 62 IFGVSTYEAEIHPLMRFTLLEII-----DKANYEKPVLVFG----VHGWAPSAERTAGEL 112
Query: 224 LANQGAKRLVPV---GLGDDDQCIEDDFSAWRELV 255
L + L G D++ IE+ S ++ +
Sbjct: 113 LKETKFRILSFTEIKGSNMDERKIEEAISLLKKEL 147
|
| >d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Azotobacter vinelandii [TaxId: 354]
Score = 63.8 bits (154), Expect = 1e-12
Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 17/145 (11%)
Query: 565 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 624
+ M+ GTGLAPF +Q+ + +L G R + + QS
Sbjct: 9 HLYMLSTGTGLAPFMSLIQDPEVYERF----EKVVLIHGVRQVNELAYQQFITEHLPQSE 64
Query: 625 ALSQLIVA------------FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS 672
+ + F +G + ++ + + + + + +CG + S
Sbjct: 65 YFGEAVKEKLIYYPTVTRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICG-SPS 123
Query: 673 MARDVHRTLHTIVQEQGSLDSSKAE 697
M + L + +
Sbjct: 124 MLDESCEVLDGFGLKISPRMGEPGD 148
|
| >d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Methane monooxygenase component C, MmoC species: Methylococcus capsulatus [TaxId: 414]
Score = 63.5 bits (153), Expect = 2e-12
Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 6/127 (4%)
Query: 556 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYED 615
F L P + GTGLAP +++ + N + + Y D
Sbjct: 1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPN-----ETRIYFGVNTEPELFYID 55
Query: 616 ELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR 675
EL + +S + E Q ++ + +Y+CG M
Sbjct: 56 ELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALREDLESSDANPDIYLCG-PPGMID 114
Query: 676 DVHRTLH 682
+
Sbjct: 115 AACELVR 121
|
| >d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Nitrate reductase species: Corn (Zea mays) [TaxId: 4577]
Score = 62.7 bits (151), Expect = 3e-12
Identities = 16/137 (11%), Positives = 41/137 (29%), Gaps = 10/137 (7%)
Query: 555 NFKL---PADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 611
+F + +A+ + MI G+G+ P +Q L++ + L + R
Sbjct: 2 SFVINGKQRNAR-RLAMICGGSGITPMYQIIQA--VLRDQPEDHTEMHLVYANRTEDDIL 58
Query: 612 IYEDELNNFVQSGALSQLIVAFSREGPTKE----YVQHKMMEKSSDIWNMLSEGAYLYVC 667
+ ++ + ++ + +E V + + C
Sbjct: 59 LRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALAC 118
Query: 668 GDAKSMARDVHRTLHTI 684
G + + L +
Sbjct: 119 GPPPMIQFAISPNLEKM 135
|
| >d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 59.9 bits (144), Expect = 2e-11
Identities = 16/128 (12%), Positives = 31/128 (24%), Gaps = 8/128 (6%)
Query: 558 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL 617
+ P+ +I G G P L F N + + DE+
Sbjct: 1 MAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQV----NWFHAAENGDVHA-FADEV 55
Query: 618 NNFVQSGALSQLIVAFSREGPT---KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMA 674
QS + + K + + S + S+ +
Sbjct: 56 KELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFM 115
Query: 675 RDVHRTLH 682
+ + L
Sbjct: 116 QFTAKQLV 123
|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Clostridium beijerinckii [TaxId: 1520]
Score = 59.3 bits (143), Expect = 3e-11
Identities = 20/149 (13%), Positives = 50/149 (33%), Gaps = 19/149 (12%)
Query: 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFF 166
+ I + + TG E A+ +A + + D ++L E+I+
Sbjct: 1 MKIVYWSGTGNTEKMAELIAKGIIESGKD--------VNTINVSDVNIDELLNEDILILG 52
Query: 167 LATYGDGEPTDNAARFYKWFTEKEGGEWLQK-LKYGVFGLGNRQYEHFNKIAKVVDEILA 225
+ D ++ F + E +K +G +G G+ ++ + +E +
Sbjct: 53 CSAMTDEVLEESE--FEPFIEEISTKISGKKVALFGSYGWGDGKW------MRDFEERMN 104
Query: 226 NQGAKRLVPVGLGDDDQCIEDDFSAWREL 254
G + + ++ ++ E
Sbjct: 105 GYGCVVVETPLIVQNE--PDEAEQDCIEF 131
|
| >d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Alcaligenes eutrophus [TaxId: 106590]
Score = 59.2 bits (142), Expect = 4e-11
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 9/125 (7%)
Query: 561 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 620
DAK PI++I G GL P L+ A + G RN + + +
Sbjct: 3 DAKTPIVLISGGVGLTPMVSMLKVALQ-----APPRQVVFVHGARNSAVHAMRDRLREAA 57
Query: 621 VQSGALSQLIVAFSREGPTKE---YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDV 677
L + + Y +++ ++L A Y+CG M R
Sbjct: 58 KTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFM-RMQ 116
Query: 678 HRTLH 682
H L
Sbjct: 117 HDALK 121
|
| >d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: NAD(P)H:flavin oxidoreductase species: Escherichia coli [TaxId: 562]
Score = 56.4 bits (135), Expect = 3e-10
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 7/121 (5%)
Query: 561 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 620
D + P+I+I GTG + R L A +++G R + Y +
Sbjct: 3 DEERPMILIAGGTGFSYARSILLTALARNPN----RDITIYWGGREEQHLYDLCELEALS 58
Query: 621 VQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRT 680
++ L + V E + + D + +Y+ G MA+
Sbjct: 59 LKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTL--AEHDIYIAG-RFEMAKIARDL 115
Query: 681 L 681
Sbjct: 116 F 116
|
| >d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Score = 55.7 bits (133), Expect = 7e-10
Identities = 27/121 (22%), Positives = 39/121 (32%), Gaps = 8/121 (6%)
Query: 561 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 620
D K P++M+ GTG+APF LQ P L FG ++L+
Sbjct: 3 DVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE----HPVRLVFGVTQDCDLV-ALEQLDAL 57
Query: 621 VQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRT 680
Q + + E + D N +Y+CG M V
Sbjct: 58 QQKLPWFEYRTVVAHAESQHERKGYVTGHIEYDWLNG--GEVDVYLCG-PVPMVEAVRSW 114
Query: 681 L 681
L
Sbjct: 115 L 115
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Score = 55.9 bits (134), Expect = 7e-10
Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 13/131 (9%)
Query: 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIV 163
KV IF+ + + E A+ LA+ R V + A + ++ V
Sbjct: 2 TNKVVIFYDSMWHSTEKMARVLAESFRD----EGCTVKLMWCKACHHSQIMSEISDAGAV 57
Query: 164 FFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEI 223
T+ +G + G Q G FG + + KV+ E
Sbjct: 58 IVGSPTHNNGILPY-----VAGTLQYIKGLRPQNKIGGAFG----SFGWSGESTKVLAEW 108
Query: 224 LANQGAKRLVP 234
L G
Sbjct: 109 LTGMGFDMPAT 119
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} Length = 149 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Score = 52.4 bits (125), Expect = 9e-09
Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 13/135 (9%)
Query: 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENI 162
GK K I + T + E A AL D A K+ + + E + +
Sbjct: 1 GKAKAVIAYDTMWLSTEKMAHALMDGLVA--GGCEVKLFKLSVSDRNDVIKEILDARAVL 58
Query: 163 VFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 222
V G ++ + G + FG Y K+++E
Sbjct: 59 V-------GSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFG----AYGWGGGAQKILEE 107
Query: 223 ILANQGAKRLVPVGL 237
L + + G
Sbjct: 108 RLKAAKIELIAEPGP 122
|
| >d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: cytochrome b5 reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (122), Expect = 2e-08
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 5/131 (3%)
Query: 553 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYI 612
+ + + K + MI GTG+ P ++ + L F + K +
Sbjct: 9 KKSNPIIRTVK-SVGMIAGGTGITPMLQVIRAIMKDPDDHTVC---HLLFANQTEKDILL 64
Query: 613 YEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKS-SDIWNMLSEGAYLYVCGDAK 671
+ + A +L R +Y Q + E+ D E + +CG
Sbjct: 65 RPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPP 124
Query: 672 SMARDVHRTLH 682
+ L
Sbjct: 125 MIQYACLPNLD 135
|
| >d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Phthalate dioxygenase reductase species: Pseudomonas cepacia, db01 [TaxId: 292]
Score = 50.3 bits (119), Expect = 3e-08
Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 18/134 (13%)
Query: 555 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYE 614
F L AK I++ G G+ P ++ A L++ R+ +
Sbjct: 1 EFPLDKRAK-SFILVAGGIGITPMLSMARQLRAEGL-----RSFRLYYLTRDP-EGTAFF 53
Query: 615 DELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMA 674
DEL + + ++ ++Y CG +++
Sbjct: 54 DELTSDEWRSDVKIHHDHGDPTKA----------FDFWSVFEKSKPAQHVYCCG-PQALM 102
Query: 675 RDVHRTLHTIVQEQ 688
V
Sbjct: 103 DTVRDMTGHWPSGT 116
|
| >d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Maize (Zea mays), root isoform [TaxId: 4577]
Score = 48.4 bits (115), Expect = 3e-07
Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 15/101 (14%)
Query: 469 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV-------YEKTPTG 521
+ PP P R YSI+S+ V E
Sbjct: 64 GQSYGVIPPGENPKKPGAP-QNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKED 122
Query: 522 RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-SNFKLPAD 561
G+CS ++ NS P +K + LP +
Sbjct: 123 PSKNGVCSNFLCNSKPGDK------IQLTGPSGKIMLLPEE 157
|
| >d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Escherichia coli [TaxId: 562]
Score = 47.3 bits (111), Expect = 6e-07
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 11/123 (8%)
Query: 565 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 624
+ M+ GT + P+ L+ L +L R +
Sbjct: 8 TLWMLATGTAIGPYLSILRLGKDLDRF----KNLVLVHAARYAADLSYLPLMQELEKRYE 63
Query: 625 ALSQLIVAFSREGPTKEYV-----QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVH 678
++ SRE + E S I + E +++ +CG M RD
Sbjct: 64 GKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCG-NPQMVRDTQ 122
Query: 679 RTL 681
+ L
Sbjct: 123 QLL 125
|
| >d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 488 RLQPRYYSISSSPRVAPS---RIHVTCALVYEKTPTGRVHKGLCSTWMKN 534
+ R YSI+SS + + + G KG+CS ++ +
Sbjct: 71 PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCD 120
|
| >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 12/53 (22%), Positives = 19/53 (35%)
Query: 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 360
+Y P V + L H++FD+ G L Y G +G+
Sbjct: 6 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPG 58
|
| >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Score = 38.6 bits (89), Expect = 6e-04
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 490 QPRYYSISSSPRVAPSRIHVTCALV----YEKTPTGRVHKGLCSTWMKNSLP 537
+ R YSI+S+ V Y+ +G G+CST++ + P
Sbjct: 67 KLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEP 118
|
| >d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Dihydroorotate dehydrogenase B, PyrK subunit domain: Dihydroorotate dehydrogenase B, PyrK subunit species: Lactococcus lactis, isozyme B [TaxId: 1358]
Score = 37.4 bits (86), Expect = 0.002
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 565 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 620
I++IG G G+ P ++ + G + I E+E +N
Sbjct: 10 KILIIGGGIGVPPLYEL------AKQLEKTGCQMTILLGFASEN-VKILENEFSNL 58
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 714 | |||
| d1ja1a1 | 279 | NADPH-cytochrome p450 reductase {Rat (Rattus norve | 100.0 | |
| d1f20a1 | 270 | Neuronal nitric-oxide synthase FAD/NADP+ domain {R | 100.0 | |
| d1ddga1 | 221 | Sulfite reductase flavoprotein {Escherichia coli [ | 100.0 | |
| d1ja1a3 | 160 | NADPH-cytochrome p450 reductase {Rat (Rattus norve | 100.0 | |
| d1ja1a2 | 177 | NADPH-cytochrome p450 reductase, N-terminal domain | 100.0 | |
| d1ykga1 | 146 | Sulfite reductase alpha-component CysJ N-terminal | 100.0 | |
| d1tlla2 | 202 | Nitric oxide (NO) synthase FMN domain {Rat (Rattus | 99.98 | |
| d1f20a2 | 165 | Neuronal nitric-oxide synthase FAD/NADP+ domain {R | 99.98 | |
| d1bvyf_ | 152 | FMN-binding domain of the cytochrome P450bm-3 {Bac | 99.97 | |
| d1ddga2 | 153 | Sulfite reductase flavoprotein {Escherichia coli [ | 99.97 | |
| d1f4pa_ | 147 | Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} | 99.96 | |
| d1fnda2 | 160 | Ferredoxin reductase (flavodoxin reductase) {Spina | 99.96 | |
| d1jb9a2 | 154 | Ferredoxin reductase (flavodoxin reductase) {Maize | 99.95 | |
| d2fcra_ | 173 | Flavodoxin {Chondrus crispus [TaxId: 2769]} | 99.94 | |
| d1yoba1 | 179 | Flavodoxin {Azotobacter vinelandii [TaxId: 354]} | 99.94 | |
| d2bmwa2 | 162 | Ferredoxin reductase (flavodoxin reductase) {Cyano | 99.94 | |
| d1czna_ | 169 | Flavodoxin {Synechococcus elongatus PCC 7942 [TaxI | 99.94 | |
| d1ag9a_ | 175 | Flavodoxin {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1oboa_ | 169 | Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 11 | 99.91 | |
| d1fuea_ | 163 | Flavodoxin {Helicobacter pylori [TaxId: 210]} | 99.88 | |
| d1rlja_ | 135 | Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423] | 99.88 | |
| d1tvca2 | 141 | Methane monooxygenase component C, MmoC {Methyloco | 99.85 | |
| d1krha2 | 133 | Benzoate dioxygenase reductase {Acinetobacter sp. | 99.83 | |
| d1qfja2 | 135 | NAD(P)H:flavin oxidoreductase {Escherichia coli [T | 99.79 | |
| d2fz5a1 | 137 | Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | 99.78 | |
| d1fdra2 | 148 | Ferredoxin reductase (flavodoxin reductase) {Esche | 99.77 | |
| d1gvha3 | 143 | Flavohemoglobin, C-terminal domain {Escherichia co | 99.77 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 99.77 | |
| d1cqxa3 | 142 | Flavohemoglobin, C-terminal domain {Alcaligenes eu | 99.76 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 99.74 | |
| d1umka2 | 147 | cytochrome b5 reductase {Human (Homo sapiens) [Tax | 99.73 | |
| d5nula_ | 138 | Flavodoxin {Clostridium beijerinckii [TaxId: 1520] | 99.73 | |
| d2piaa2 | 120 | Phthalate dioxygenase reductase {Pseudomonas cepac | 99.72 | |
| d2cnda2 | 146 | Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} | 99.71 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 99.71 | |
| d1jb9a1 | 157 | Ferredoxin reductase (flavodoxin reductase) N-term | 99.7 | |
| d1a8pa2 | 158 | Ferredoxin reductase (flavodoxin reductase) {Azoto | 99.65 | |
| d1fnda1 | 136 | Ferredoxin reductase (flavodoxin reductase) N-term | 99.51 | |
| d1ep3b2 | 160 | Dihydroorotate dehydrogenase B, PyrK subunit {Lact | 99.46 | |
| d2bmwa1 | 133 | Ferredoxin reductase (flavodoxin reductase) N-term | 99.45 | |
| d2arka1 | 184 | Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | 99.38 | |
| d1ydga_ | 201 | Trp repressor binding protein WrbA {Deinococcus ra | 99.01 | |
| d2a5la1 | 196 | Trp repressor binding protein WrbA {Pseudomonas ae | 98.92 | |
| d1sqsa_ | 232 | Hypothetical protein SP1951 {(Streptococcus pneumo | 98.27 | |
| d1nni1_ | 171 | Azobenzene reductase {Bacillus subtilis [TaxId: 14 | 98.23 | |
| d1t0ia_ | 185 | Hypothetical protein Ylr011wp {Baker's yeast (Sacc | 98.21 | |
| d2fzva1 | 233 | Putative arsenical resistance protein {Shigella fl | 98.19 | |
| d1rlia_ | 179 | Hypothetical protein YwqN {Bacillus subtilis [TaxI | 97.96 | |
| d1rtta_ | 174 | Hypothetical protein PA1204 {Pseudomonas aeruginos | 97.88 | |
| d2qwxa1 | 230 | Quinone reductase type 2 (menadione reductase) {Hu | 97.83 | |
| d1fdra1 | 99 | Ferredoxin reductase (flavodoxin reductase) N-term | 97.8 | |
| d1d4aa_ | 273 | NAD(P)H:quinone reductase {Human (Homo sapiens) [T | 97.62 | |
| d2z98a1 | 200 | ACP phosphodiesterase AcpD {Escherichia coli [TaxI | 97.59 | |
| d1cqxa2 | 111 | Flavohemoglobin, central domain {Alcaligenes eutro | 97.53 | |
| d1qfja1 | 97 | NAD(P)H:flavin oxidoreductase {Escherichia coli [T | 97.51 | |
| d1a8pa1 | 99 | Ferredoxin reductase (flavodoxin reductase) N-term | 97.42 | |
| d2cnda1 | 114 | Nitrate reductase core domain {Corn (Zea mays) [Ta | 97.26 | |
| d1krha1 | 100 | Benzoate dioxygenase reductase {Acinetobacter sp. | 97.21 | |
| d1gvha2 | 107 | Flavohemoglobin, central domain {Escherichia coli | 97.06 | |
| d2piaa1 | 103 | Phthalate dioxygenase reductase {Pseudomonas cepac | 97.06 | |
| d1tvca1 | 109 | Methane monooxygenase component C, MmoC {Methyloco | 96.93 | |
| d1ep3b1 | 101 | Dihydroorotate dehydrogenase B, PyrK subunit {Lact | 96.51 | |
| d1umka1 | 124 | cytochrome b5 reductase {Human (Homo sapiens) [Tax | 95.8 | |
| d2c42a3 | 157 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 80.72 |
| >d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.5e-50 Score=421.83 Aligned_cols=246 Identities=36% Similarity=0.687 Sum_probs=227.8
Q ss_pred CCCCccccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEE
Q 005109 303 ANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSL 382 (714)
Q Consensus 303 ~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i 382 (714)
.+.+.+|+.+|||.|+|+.+++|+ ++++|+|+||+|||++++++|+|||||+|||.|+++.|+++|++||+++|+.+.+
T Consensus 31 ~~~~~~y~~~nP~~A~v~~n~~L~-~~s~k~~~Hie~dl~~s~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~ 109 (279)
T d1ja1a1 31 ENQKPPFDAKNPFLAAVTANRKLN-QGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSL 109 (279)
T ss_dssp TSCCSSCBTTBCEEEEEEEEEECC-SSSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEE
T ss_pred ccCCCCCCCCCCEEeEEEEEEEeC-CCCCccEEEEEEEcCCCCceecCCCEEEEEeCCCHHHHHHHHHHcCCCCceEEEe
Confidence 345678999999999999999998 5688999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCc--cCHHHHHHHHHh
Q 005109 383 HTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASP--AGKDEYAQWIVA 459 (714)
Q Consensus 383 ~~~~~~~~~~~~~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~--~g~~~y~~~i~~ 459 (714)
+...+++ ..+.||| |||++++|++|+||+++|+|.+|+.||.||+|+.+|++|+.|++. +|++.|.+|+.+
T Consensus 110 ~~~~~~~------~~~~p~p~~~tl~~lL~~~~Di~~~p~k~~l~~La~~a~~~~~k~~L~~l~~~~~~~~~~y~~~~~~ 183 (279)
T d1ja1a1 110 NNLDEES------NKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVE 183 (279)
T ss_dssp EESCTTC------SCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHGGGCSSSHHHHHHHHHTTT
T ss_pred ccCCCcc------ccccCCCCchhHHHHHHhhccccCCCcHHHHHHHHHHcCChHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 8765432 3567899 999999999999999999999999999999999999999999765 467899999999
Q ss_pred cCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCC
Q 005109 460 SQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPME 539 (714)
Q Consensus 460 ~~~~l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~ 539 (714)
.+++++|+|.+||++++|+++|++. +|+|+||+|||||||..++++|+|||++|.+.+..|+.+.|+||+||.++.+++
T Consensus 184 ~~~~ildlL~~fps~~~pl~~ll~~-lp~L~PR~YSISSSp~~~p~~v~ltv~vV~y~~~~g~~r~GvcS~~L~~l~~~~ 262 (279)
T d1ja1a1 184 ARRHILAILQDYPSLRPPIDHLCEL-LPRLQARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAG 262 (279)
T ss_dssp TTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSEEECHHHHHHHHCCCCS
T ss_pred cCCCHHHHHhhCcccCCCHHHHHHh-CccCCCceeeEecCcccCCCEEEEEEEEEEeecCCCCcccccchHHHhhcCCCC
Confidence 9999999999999999999999975 699999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCceeeEEEecCCc
Q 005109 540 KSNDCSWAPIFVRQSNF 556 (714)
Q Consensus 540 ~~~~~~~v~i~v~~~~F 556 (714)
+...+..+||+++.++|
T Consensus 263 ~~~~~~~vpifir~s~F 279 (279)
T d1ja1a1 263 ENGGRALVPMFVRKSQF 279 (279)
T ss_dssp TTSSCCEEEEEEECCSC
T ss_pred CcCCceEEEEEEcCCCC
Confidence 76666689999999988
|
| >d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.7e-46 Score=389.79 Aligned_cols=236 Identities=32% Similarity=0.564 Sum_probs=206.0
Q ss_pred cCCCCeeeEEeeeecccCCCCCCceeEEEEEecC-CCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCC--cEEEEeeCC
Q 005109 310 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLSPD--TYFSLHTDK 386 (714)
Q Consensus 310 ~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d--~~~~i~~~~ 386 (714)
..++|+.|+|+.+++|+.++++|+|+|||||++| ++++|+|||||+|||.|+++.|++++++||++++ ..+.++...
T Consensus 26 ~~k~~~~a~v~~~~~L~~~~s~r~t~hield~~g~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~~~~~ 105 (270)
T d1f20a1 26 HKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLE 105 (270)
T ss_dssp HTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEEEE
T ss_pred ccCCcEeeEEEEEEeccCCCCCccEEEEEEEcCCCCCCeEcCCCEEEEEeCCCHHHHHHHHHHhCCCCccCEEEEeeecc
Confidence 3578999999999999999999999999999986 4899999999999999999999999999999874 556655433
Q ss_pred CCCCCCCC--CCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCC
Q 005109 387 EDGTPLGK--STLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRS 463 (714)
Q Consensus 387 ~~~~~~~~--~~~~~p~p-p~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~ 463 (714)
+.+++++. .....+++ |||++++|++|+||+++|+|.+|+.||+||+|+.||++|..|+ +|+++|.+|+...+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~p~tl~~~l~~~~Di~~~p~~~~l~~La~~~~~~~ek~~L~~l~--~~~~~~~~~~~~~~~t 183 (270)
T d1f20a1 106 ERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLS--KGLQEYEEWKWGKNPT 183 (270)
T ss_dssp EESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHT--TCSHHHHHHHHHHCCC
T ss_pred cccccccccccccccCCCCCccHHHHHHhheecccCCCHHHHHHHHHHCCCHHHHHHHHhhc--ccHHHHHHHHhccCCc
Confidence 22222211 11233444 9999999999999999999999999999999999999999997 5789999999999999
Q ss_pred HHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCC--CccccCccchhhcccCCCCCC
Q 005109 464 LLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKS 541 (714)
Q Consensus 464 l~dvl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~--gr~~~G~~S~~L~~~~~g~~~ 541 (714)
++|+|++||++++|++.|++. +|+++||+|||||||..++++|+|||++|.+.+.. |+.+.|+||+||.++.+|+
T Consensus 184 lldvL~~fps~~~pl~~ll~~-lp~L~PR~YSIsSSp~~~p~~v~Ltv~vV~y~~~~~~g~~r~GvcS~~L~~l~~Gd-- 260 (270)
T d1f20a1 184 MVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADD-- 260 (270)
T ss_dssp HHHHHHHSTTBCBCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTC--
T ss_pred HHHHHHhccccCCCHHHHHHh-ccccccceeEEecCccCCCCEEEEEEEEEEEeccCCCCCeeeeechHHHhcCCCCC--
Confidence 999999999999999999975 59999999999999999999999999999887765 4578999999999988765
Q ss_pred CCCceeeEEEecC
Q 005109 542 NDCSWAPIFVRQS 554 (714)
Q Consensus 542 ~~~~~v~i~v~~~ 554 (714)
.++++++.+
T Consensus 261 ----~v~v~vr~s 269 (270)
T d1f20a1 261 ----VVPCFVRGA 269 (270)
T ss_dssp ----EEEEEEECC
T ss_pred ----EEEEEEecC
Confidence 688998864
|
| >d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-39 Score=326.61 Aligned_cols=216 Identities=24% Similarity=0.377 Sum_probs=183.6
Q ss_pred ccccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCC
Q 005109 307 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDK 386 (714)
Q Consensus 307 ~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~ 386 (714)
.+|+..|||.|+|+.|++|+.++++|+|+|||||+++++++|+|||||+|+|+|+++.|++++++||+++++.+.++.
T Consensus 4 ~p~~~~~p~~a~v~~n~~Lt~~~~~~~~~hleldl~~~~~~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~~~~-- 81 (221)
T d1ddga1 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEG-- 81 (221)
T ss_dssp CCCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEETT--
T ss_pred CCCCCCCCEEEEEEeEEEecCCCCCceEEEEEEEcCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCcccccccCC--
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999887641
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHH
Q 005109 387 EDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLE 466 (714)
Q Consensus 387 ~~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~d 466 (714)
. ++|++++|++|+||. .|.|.+|+.+|.++.++. .+..++ +++.+.+|... +.+ +
T Consensus 82 ---~------------~~~l~~~l~~~~di~-~~~~~~l~~~a~~~~~~~---~~~~~~---d~~~~~~~~~~--~~~-~ 136 (221)
T d1ddga1 82 ---K------------TLPLNEALQWHFELT-VNTANIVENYATLTRSET---LLPLVG---DKAKLQHYAAT--TPI-V 136 (221)
T ss_dssp ---E------------EEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT---TGGGTT---CTHHHHHHHHH--SCH-H
T ss_pred ---C------------cccHHHHhccccccc-CCcHHHHHHHHHhcCCHH---HhhccC---CHHHHHHHhcc--cch-h
Confidence 1 679999999999998 567899999999998864 233333 34556666643 344 4
Q ss_pred HHhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCc
Q 005109 467 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCS 545 (714)
Q Consensus 467 vl~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~ 545 (714)
.|.+||++++|++.|++. +|+++||+|||||||..++++++|||++|.+.+ .|+.+.|+||+||.+ +.+|+
T Consensus 137 ~l~~~~~~~~pl~~ll~~-lp~l~PR~YSIsSSp~~~p~~i~ltv~vv~~~~-~~~~r~GvcS~~L~~~l~~g~------ 208 (221)
T d1ddga1 137 DMVRFSPAQLDAEALINL-LRPLTPRLYSIASSQAEVENEVHVTVGVVRYDV-EGRARAGGASSFLADRVEEEG------ 208 (221)
T ss_dssp HHHHHSCCCCCHHHHHHH-SCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEE-TTEEEECHHHHHHHHSCCSSC------
T ss_pred HHhhcccCCCCHHHHHHh-hhccCceeeeeccccccCCCeeeEEEEEEEeeC-CCCccceecHHHHHhhCCCCC------
Confidence 455799999999999975 599999999999999999999999999998755 478899999999986 55543
Q ss_pred eeeEEEecC-Ccc
Q 005109 546 WAPIFVRQS-NFK 557 (714)
Q Consensus 546 ~v~i~v~~~-~F~ 557 (714)
.++|+++.+ +|+
T Consensus 209 ~V~v~ir~s~~FR 221 (221)
T d1ddga1 209 EVRVFIEHNDNFR 221 (221)
T ss_dssp EEEEEEECCTTSC
T ss_pred EEEEEEecCCCCC
Confidence 689999875 575
|
| >d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.5e-38 Score=304.88 Aligned_cols=158 Identities=48% Similarity=0.902 Sum_probs=148.7
Q ss_pred cCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecC
Q 005109 557 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 636 (714)
Q Consensus 557 ~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~ 636 (714)
+||.++.+||||||+|||||||+||||++...++.+...++++||||||+++.|++|++||+.+.+.+.++++++||||+
T Consensus 1 rlP~~~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~~~~g~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~ 80 (160)
T d1ja1a3 1 RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSRE 80 (160)
T ss_dssp CCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSSSEEEEEETTS
T ss_pred CcCcCCCCCEEEEEccHhHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCccccHHHHHHHHHHHHcCCCceeEEEeecc
Confidence 57889999999999999999999999999887766666789999999999877999999999999999999999999999
Q ss_pred CCCcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 637 GPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 637 ~~~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
++++.|||+.+.++.+.+++++ ..+++||||||++.|+++|+++|.+|+.+.++++.++|++|+++|+++|||++|||
T Consensus 81 ~~~~~yvq~~~~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l~~~~r~~~dv~ 159 (160)
T d1ja1a3 81 QAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVW 159 (160)
T ss_dssp SSSCCCHHHHHHHTHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ccCccccchHHHHHHHHHHHHHhcCCcEEEEeCCCccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEecc
Confidence 9899999999999999999987 66899999998578999999999999999999999999999999999999999999
|
| >d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: NADPH-cytochrome p450 reductase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.6e-35 Score=286.05 Aligned_cols=160 Identities=40% Similarity=0.727 Sum_probs=141.1
Q ss_pred ccCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHH
Q 005109 101 DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (714)
Q Consensus 101 ~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~ 180 (714)
....++|+|+|||||||||.+|+.|++++.+++ ..+.++++++++.++.... ...++..+||++||||+|++|+|++
T Consensus 12 ~~~~k~i~IlygS~tGnae~~A~~l~~~l~~~g--~~~~~~~~~~~~~~~l~~~-~~~~~~~~i~~~ST~g~G~~P~n~~ 88 (177)
T d1ja1a2 12 KKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYG--MRGMSADPEEYDLADLSSL-PEIDKSLVVFCMATYGEGDPTDNAQ 88 (177)
T ss_dssp HHHTCCEEEEEECSSSHHHHHHHHHHHHGGGGT--CCEEEECGGGSCGGGGGGG-GGSTTCEEEEEEEEETTTEECGGGH
T ss_pred hccCCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEeeccccchhhhhhh-hccccceEEEEEeccCCCCCCHhHH
Confidence 345689999999999999999999999998876 5578899999987542211 1235678999999999999999999
Q ss_pred HHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHH
Q 005109 181 RFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 260 (714)
Q Consensus 181 ~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 260 (714)
+|++||... ...|++++|||||||||.|++||.++++++++|+++||++++|+|++|++.+.+++|+.|.+++|++|+
T Consensus 89 ~F~~~L~~~--~~~l~~~~yaVfGlGds~Y~~Fc~a~~~l~~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~ 166 (177)
T d1ja1a2 89 DFYDWLQET--DVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVC 166 (177)
T ss_dssp HHHHHHHHC--CCCCTTCEEEEEEEECSSSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--cccccCceEEEEecCCccHHHHHHHHHHHHHHHHHcCCcEEEcceeecCCCCcHHHHHHHHHHHHHHHH
Confidence 999999843 345899999999999999999999999999999999999999999999988899999999999999999
Q ss_pred hhhCC
Q 005109 261 NLLRD 265 (714)
Q Consensus 261 ~~~~~ 265 (714)
+.+..
T Consensus 167 ~~~~~ 171 (177)
T d1ja1a2 167 EFFGV 171 (177)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 98854
|
| >d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Sulfite reductase alpha-component CysJ N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.4e-35 Score=275.82 Aligned_cols=144 Identities=31% Similarity=0.452 Sum_probs=131.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L 186 (714)
|+|+|||||||||++|+.|+++|.++| ..++++|++++++ .++.+++.+||++||||+|++|+|++.|+++|
T Consensus 1 I~I~ygS~tGnae~~A~~l~~~l~~~g--~~~~~~~~~~~~~------~~l~~~~~~i~~~sT~g~G~~P~~~~~f~~~l 72 (146)
T d1ykga1 1 ITIISASQTGNARRVAEALRDDLLAAK--LNVKLVNAGDYKF------KQIASEKLLIVVTSTQGEGEPPEEAVALHKFL 72 (146)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHHT--CCCEEEEGGGCCG------GGGGGCSEEEEEEECBGGGBCCGGGHHHHHHH
T ss_pred CEEEEECCchHHHHHHHHHHHHHHHCC--CCceEeeccccch------hhcccccceEEEEeecCCCcCchhHHHHHHHH
Confidence 589999999999999999999999887 5688999999985 45788999999999999999999999999999
Q ss_pred HhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHh
Q 005109 187 TEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 187 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 261 (714)
... ....|++++|||||||||+|++||.++|.++++|+++||++++|++++|+ +.+++|++|++++|++|+.
T Consensus 73 ~~~-~~~~l~~~~~aVfGlGds~Y~~Fc~~~~~l~~~l~~lGa~~i~~~~~~D~--~~e~~~~~W~~~~~~~L~~ 144 (146)
T d1ykga1 73 FSK-KAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADV--EYQAAASEWRARVVDALKS 144 (146)
T ss_dssp TST-TCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEECT--TCHHHHHHHHHHHHHHHHT
T ss_pred Hcc-cccccCCCeEEEEcCcchhHHHHHHHHHHHHHHHHHCCCcEeeCceecCC--CCHHHHHHHHHHHHHHHHh
Confidence 622 23458999999999999999999999999999999999999999999986 4689999999999999975
|
| >d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Nitric oxide (NO) synthase FMN domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.98 E-value=1.2e-32 Score=273.40 Aligned_cols=155 Identities=27% Similarity=0.514 Sum_probs=138.3
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F 182 (714)
.+.||+|+|||+|||||++|+.|++++.+ + ..+++++++++++ ..+.+++.+||++||||+|+||+|++.|
T Consensus 2 ~~~ki~I~YgS~TG~te~~A~~la~~l~~-~--~~~~v~~~~~~~~------~~l~~~~~~i~~~sT~g~Ge~p~~~~~f 72 (202)
T d1tlla2 2 KRVKATILYATETGKSQAYAKTLCEIFKH-A--FDAKAMSMEEYDI------VHLEHEALVLVVTSTFGNGDPPENGEKF 72 (202)
T ss_dssp CSCEEEEEEECSSSHHHHHHHHHHHHHTT-T--SEEEEEETTTSCT------TSGGGCSEEEEEECCBTTTBCCGGGHHH
T ss_pred CCCcEEEEEECCchHHHHHHHHHHHHHhC-C--CCcEEechhhCCH------HHhccccceEEeccccCCCCCChhHHHH
Confidence 35789999999999999999999998854 3 5688999999886 3578899999999999999999999999
Q ss_pred HHHHHhc-c---------------------------------------CCCccCCceEEEEeccCCchhHHHHHHHHHHH
Q 005109 183 YKWFTEK-E---------------------------------------GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDE 222 (714)
Q Consensus 183 ~~~L~~~-~---------------------------------------~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~ 222 (714)
++||... . ....|++++||||||||+.|++||.+++++|+
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~faV~GlGds~y~~Fc~~ak~ld~ 152 (202)
T d1tlla2 73 GCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDT 152 (202)
T ss_dssp HHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHHHH
T ss_pred HHHHHhcccccccccccccccccccccccccchhhhccccccccccccccchhcCceeEEEccCcccHHHHhhhHHHHHH
Confidence 9999721 1 12358999999999999999999999999999
Q ss_pred HHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhhCCC
Q 005109 223 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDD 266 (714)
Q Consensus 223 ~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~~~ 266 (714)
+|.++||+|++|++++|+..+.|++|++|+++||++|.+.++..
T Consensus 153 ~l~~LGA~ri~~~g~~D~~~~~e~~~~~W~~~l~~~l~~~~~~~ 196 (202)
T d1tlla2 153 LLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVG 196 (202)
T ss_dssp HHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCcccccchhccCCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999988899999999999999999988643
|
| >d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.98 E-value=7.7e-32 Score=259.07 Aligned_cols=159 Identities=38% Similarity=0.735 Sum_probs=140.6
Q ss_pred CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhh-cCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005109 555 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 633 (714)
Q Consensus 555 ~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~-~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~ 633 (714)
+|+||.++++|+||||+|||||||+||||++..... .+...+++++|||||+...+++|.+|++++.+.+..+++++++
T Consensus 1 sF~Lp~~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 80 (165)
T d1f20a2 1 SFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAY 80 (165)
T ss_dssp TSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccHHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 599999999999999999999999999999876532 3445578999999999876789999999999999998999999
Q ss_pred ecCCC-Ccccccchhhhc-hHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Q 005109 634 SREGP-TKEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 710 (714)
Q Consensus 634 Sr~~~-~k~yVq~~l~e~-~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 710 (714)
||+.. ..+|+++.+.+. .+.+++.+ .+++.||+||| ++|+++|.++|.+++.+.++++.++|++++++|+++|||+
T Consensus 81 sr~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~yiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~r~~ 159 (165)
T d1f20a2 81 SREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYH 159 (165)
T ss_dssp SSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEE
T ss_pred eccccCCCCcccchHHHHHHHHHHhhccCCCcEEEEECC-cchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 99754 567888888765 45566655 57899999999 8999999999999999999999999999999999999999
Q ss_pred EecC
Q 005109 711 RDVW 714 (714)
Q Consensus 711 ~DvW 714 (714)
+|||
T Consensus 160 ~ev~ 163 (165)
T d1f20a2 160 EDIF 163 (165)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 9999
|
| >d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: FMN-binding domain of the cytochrome P450bm-3 species: Bacillus megaterium [TaxId: 1404]
Probab=99.97 E-value=3.1e-32 Score=258.38 Aligned_cols=148 Identities=29% Similarity=0.600 Sum_probs=128.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
.+|+|+|||||||||.+|+.|++++.+++ ..+.+.+++++. ..+..+.+++|++ |+|+|++|+|+.+|++
T Consensus 2 tpi~I~ygS~tGnae~~A~~l~~~l~~~g--~~~~v~~~~~~~-------~~~~~~~~i~~~s-tt~~G~~p~~~~~f~~ 71 (152)
T d1bvyf_ 2 TPLLVLYGSNMGTAEGTARDLADIAMSKG--FAPQVATLDSHA-------GNLPREGAVLIVT-ASYNGHPPDNAKQFVD 71 (152)
T ss_dssp CCEEEEEECSSSHHHHHHHHHHHHHHTTT--CCCEEEEGGGST-------TCCCSSSEEEEEE-CCBTTBCCTTTHHHHH
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHHhCC--CCceeccchhhh-------hhhhhccceEEEe-ccccCCCcccHHHHHH
Confidence 57999999999999999999999999886 457888887654 2356666655555 5558999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
+|... ....+++++||||||||++| .+||.++++++++|+++||+|++|++++|+..+.|++|++|+++||++|.+.+
T Consensus 72 ~l~~~-~~~~~~~~~~aV~GlGds~Y~~~fc~~~~~ld~~l~~lGA~~i~~~~~~D~~~~~e~~~~~W~~~l~~~L~~~~ 150 (152)
T d1bvyf_ 72 WLDQA-SADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYF 150 (152)
T ss_dssp HHHTC-CSSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhc-chhhccCceeeeeeccccchhhhhhhHHHHHHHHHHHcCCeEeECceeecCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 99732 23458999999999999999 58999999999999999999999999999988899999999999999999876
|
| >d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.3e-31 Score=252.12 Aligned_cols=153 Identities=42% Similarity=0.839 Sum_probs=138.8
Q ss_pred CCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCC
Q 005109 558 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 637 (714)
Q Consensus 558 lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~ 637 (714)
||.++++|+||||+|||||||+|||+++...... ++++||||+|+...|++|.+|++.+.+.+.++++++++||+.
T Consensus 1 LP~d~~~plvlIa~GtGIaP~~s~l~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~s~~~ 76 (153)
T d1ddga2 1 LPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP----GKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQ 76 (153)
T ss_dssp CCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTCC----SCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEETTSS
T ss_pred CCcCCCCCEEEEECchhHHHHHHHHHHHHHhcCC----CceEEeecccCcHHHHHhHHHHHHHHHcCCCceEEEEEEecc
Confidence 6888999999999999999999999999876533 678888888776658999999999999999999999999998
Q ss_pred CCcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 638 PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 638 ~~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
....|+++.+..+...++..+..++++|+|||.+.|+++|+++|.+++.+.++++.++|++++++|+++|||++|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yiCG~p~~~~~~v~~~L~~~~~~~~~~~~e~a~~~~~~l~~~gR~~~e~~ 153 (153)
T d1ddga2 77 KEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153 (153)
T ss_dssp SSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCcccccchHHHHHHHHHhhhccCCEEEEECCCcchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEecC
Confidence 88899999998888877777778899999998455679999999999999999999999999999999999999999
|
| >d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Desulfovibrio vulgaris [TaxId: 881]
Probab=99.96 E-value=6.1e-30 Score=241.31 Aligned_cols=143 Identities=24% Similarity=0.292 Sum_probs=126.9
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCC--CCCchHHHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDG--EPTDNAARFY 183 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G--~~pdna~~F~ 183 (714)
||+|+|||+|||||++|+.|++++.+.| ..++++++++++..+ .+..++++||++||||+| ++|+++..|+
T Consensus 2 kv~I~Y~S~tG~te~~A~~i~~~l~~~g--~~v~~~~~~~~~~~~-----~~~~~~~vii~~sT~g~g~~~~~~~~~~f~ 74 (147)
T d1f4pa_ 2 KALIVYGSTTGNTEYTAETIARELADAG--YEVDSRDAASVEAGG-----LFEGFDLVLLGCSTWGDDSIELQDDFIPLF 74 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHHT--CEEEEEEGGGCCSTT-----TTTTCSEEEEEECEECSSSCEECTTTHHHH
T ss_pred cEEEEEECCChhHHHHHHHHHHHHHHCC--CeEEEEeccccchhh-----hhcccCeEEEEecccCCcCCChhhhHHHhh
Confidence 6999999999999999999999999987 678899999887632 245688999999999987 5688999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCC-CCchhhHHHHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 259 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~-~~~e~~f~~W~~~l~~~L 259 (714)
+.|. ...|++++|+||||||++|+|||.++++++++|+++||+++.|.+++|.+ ...+++|..|.++|+.+|
T Consensus 75 ~~l~----~~~l~~~~~avfGlGds~y~~f~~a~~~l~~~l~~lGa~~v~~~~~~d~~~~~~~~~~~~W~~~l~~al 147 (147)
T d1f4pa_ 75 DSLE----ETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 147 (147)
T ss_dssp HTGG----GSCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHTTC
T ss_pred hccc----cccccCCcEEEEecCCccHHHHhHHHHHHHHHHHhCCCEEeeCCEEEecCCccchHHHHHHHHHHHHhC
Confidence 9986 45689999999999999999999999999999999999999999988865 357889999999998653
|
| >d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.96 E-value=5.3e-29 Score=237.13 Aligned_cols=152 Identities=28% Similarity=0.559 Sum_probs=129.7
Q ss_pred cCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-CcEEEEEEe
Q 005109 557 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFS 634 (714)
Q Consensus 557 ~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~-~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~-~~~l~~a~S 634 (714)
.||.++.+|+||||+|||||||+|||+++..+... ....++++||||+|+.+ |++|.+||.++.+.+. .+.+.+++|
T Consensus 2 ~LP~d~~~plilIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~-d~~y~~e~~~~~~~~~~~~~~~~~~s 80 (160)
T d1fnda2 2 LMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPDNFRLDFAVS 80 (160)
T ss_dssp CCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSCCBTTBCCCSEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEEET
T ss_pred CCCCCCCCCEEEEECchhHHHHHHHHHHHHHhhcccccCCceEEEEeecCcHH-HHHHHHHHHHHHHhcCCceeEEEEEc
Confidence 57889999999999999999999999999865432 22346899999999997 9999999999988865 456677777
Q ss_pred cCCC----CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCe
Q 005109 635 REGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRY 709 (714)
Q Consensus 635 r~~~----~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy 709 (714)
++.. .+.|+++.+......+++++ ..+++||+||| ++|+++|.++|.+++...+ ..|++|+++|+++|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyiCGp-~~m~~~v~~~l~~~~~~~g----~~a~~~~~~l~~~~ry 155 (160)
T d1fnda2 81 REQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEG----IDWIEYKRQLKKAEQW 155 (160)
T ss_dssp TTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEEC-HHHHHHHHHHHHHHHHTTT----CCHHHHHHHHHHTTCE
T ss_pred cchhccCCCcceehhhHHHHHHHHHHhhccCCCEEEEeCC-HHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHcCCe
Confidence 7542 57899999998888888766 66899999999 9999999999999987764 3588899999999999
Q ss_pred EEecC
Q 005109 710 LRDVW 714 (714)
Q Consensus 710 ~~DvW 714 (714)
++|||
T Consensus 156 ~~e~~ 160 (160)
T d1fnda2 156 NVEVY 160 (160)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99999
|
| >d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Maize (Zea mays), root isoform [TaxId: 4577]
Probab=99.95 E-value=2.9e-28 Score=230.63 Aligned_cols=148 Identities=31% Similarity=0.540 Sum_probs=124.3
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhc-CCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-CcEEEEEEecCCC
Q 005109 561 DAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP 638 (714)
Q Consensus 561 ~~~~piImIa~GTGIAPfrs~lq~~~~~~~~-~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~-~~~l~~a~Sr~~~ 638 (714)
|+++|+||||+|||||||+||||+++..... ....++++||||||+.. |++|.+|+.++.+++. .+.++.+++++..
T Consensus 1 Dp~~plllIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~-d~~y~~e~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
T d1jb9a2 1 DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEEFTSYLKQYPDNFRYDKALSREQK 79 (154)
T ss_dssp CTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHHHHHHHHHCTTTEEEEEEETTTCC
T ss_pred CCCCCEEEEEcceeHHHHHHHHHHHHHhccccccCCceEEEEEEecccc-hhHHHHHHHHHHHhCCCCEEEEEEeccCCc
Confidence 4678999999999999999999999865422 22346899999999997 9999999999988765 4455666666532
Q ss_pred ----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Q 005109 639 ----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 714 (714)
Q Consensus 639 ----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 714 (714)
.++++++.+....+.+..++.+++.|||||| ++|+++|.++|.+++.+.+. .|++++++|+++|||++|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~mm~~v~~~L~~~~~~~g~----~~~~~~~~l~~~~r~~~d~w 154 (154)
T d1jb9a2 80 NRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRGE----SWDQKLAQLKKNKQWHVEVY 154 (154)
T ss_dssp ----CCCCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHHTC----CHHHHHHHHHHTTCEEEEEC
T ss_pred CcCCcccccchHHHHhHHHhhhcccCCCEEEEECC-HHHHHHHHHHHHHHHHHcCc----hHHHHHHHHHHCCCEEEecC
Confidence 4678888888887777777788999999999 89999999999999988763 47889999999999999999
|
| >d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Chondrus crispus [TaxId: 2769]
Probab=99.94 E-value=2e-27 Score=229.60 Aligned_cols=146 Identities=26% Similarity=0.391 Sum_probs=117.7
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~ 185 (714)
||.|+|||||||||.+|++|++++...+. ..+.+.+. .++ .++.+++.+||++||||+|++|+++..||.+
T Consensus 1 KI~I~YgS~TGnTe~vA~~Ia~~l~~~~~-~~v~~~~~--~~~------~~l~~~d~li~g~sT~g~Ge~p~~~~~~~~~ 71 (173)
T d2fcra_ 1 KIGIFFSTSTGNTTEVADFIGKTLGAKAD-APIDVDDV--TDP------QALKDYDLLFLGAPTWNTGADTERSGTSWDE 71 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGGBC-CCEEGGGC--SCG------GGGGGCSEEEEEEECCSTTCSSCCSCSTHHH
T ss_pred CEEEEEECCchHHHHHHHHHHHHHhhcCC-CeEEEecc--chh------hccccCCeEEEEEeccCCCCCchhHHHHHHH
Confidence 68999999999999999999999987652 22222222 222 4578899999999999999999999999999
Q ss_pred HH-hccCCCccCCceEEEEeccCCc--hhHHHHHHHHHHHHHHHcCCccccc---------------------cccccCC
Q 005109 186 FT-EKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILANQGAKRLVP---------------------VGLGDDD 241 (714)
Q Consensus 186 L~-~~~~~~~l~~~~~aVFGlGds~--Y~~f~~~~k~ld~~L~~lGa~~~~~---------------------~g~gD~~ 241 (714)
+. .......|++++||||||||+. |++||.+++.++++|+++||++|.. +.+.+++
T Consensus 72 l~~~~~~~~~l~gk~~avFGlGD~~~y~~~F~~a~~~l~~~l~~~GA~~IG~~~~~gy~f~~s~a~~~~~f~gL~lD~dn 151 (173)
T d2fcra_ 72 FLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMVN 151 (173)
T ss_dssp HHHHTGGGCCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSEEEETTT
T ss_pred HhhccccCCCCCCCeEEEEEecCCCcchhhHHHHHHHHHHHHHhCCCEEecccCCCCcccccChhhcCCccccccccccc
Confidence 86 3333457999999999999998 5999999999999999999999843 3333333
Q ss_pred C--CchhhHHHHHHHHHHHHH
Q 005109 242 Q--CIEDDFSAWRELVWPELD 260 (714)
Q Consensus 242 ~--~~e~~f~~W~~~l~~~L~ 260 (714)
+ -.++.+++|.++|.+++.
T Consensus 152 ~~~~t~~ri~~W~~~l~~e~g 172 (173)
T d2fcra_ 152 DQIPMEKRVAGWVEAVVSETG 172 (173)
T ss_dssp CSSCHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHhC
Confidence 3 257889999999988764
|
| >d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Azotobacter vinelandii [TaxId: 354]
Probab=99.94 E-value=7.5e-28 Score=233.45 Aligned_cols=147 Identities=22% Similarity=0.360 Sum_probs=118.1
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
.||.|+|||||||||.+|++|++.+...+. ++++++++++. .++.+++.+||++||||+|++|+|+..|++
T Consensus 1 aKI~I~YgS~tGnte~vA~~ia~~l~~~~~---~~v~~~~~~~~------~~l~~~d~~i~~~sT~G~Ge~Pd~~~~f~~ 71 (179)
T d1yoba1 1 AKIGLFFGSNTGKTRKVAKSIKKRFDDETM---SDALNVNRVSA------EDFAQYQFLILGTPTLGEGELPGLSSDAEN 71 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCTTTB---CCCEEGGGCCH------HHHHTCSEEEEEEECBTTTBCSSGGGTCSS
T ss_pred CeEEEEEECCchhHHHHHHHHHHHHhhCCC---ceEEeccccCh------hhccCcCEEEEEecccCCCCCCchhHHHHH
Confidence 379999999999999999999998876652 46788888774 457889999999999999999999987753
Q ss_pred H----HHhccCCCccCCceEEEEeccCCch--hHHHHHHHHHHHHHHHcCCccccc-------------------cccc-
Q 005109 185 W----FTEKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVP-------------------VGLG- 238 (714)
Q Consensus 185 ~----L~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~~~~-------------------~g~g- 238 (714)
+ +........|++++||||||||+.| ++||.+++.++++|+++||++|.. .|++
T Consensus 72 ~~w~~~~~~~~~~~l~g~~~avfGlGDs~~~~~~Fc~a~~~l~~~l~~~GA~~iG~~~~~gy~f~~s~a~~~~~f~GL~l 151 (179)
T d1yoba1 72 ESWEEFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGLAL 151 (179)
T ss_dssp CCHHHHHHHHTTCCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBSSEEE
T ss_pred HHHHHHHhhccccccCCcEEEEEEecCCcccchhHHHHHHHHHHHHHhCCCeEeeccCCCCcccccchhccCCceeeeec
Confidence 2 1112235679999999999999984 899999999999999999999843 2222
Q ss_pred cC-CCC--chhhHHHHHHHHHHHHH
Q 005109 239 DD-DQC--IEDDFSAWRELVWPELD 260 (714)
Q Consensus 239 D~-~~~--~e~~f~~W~~~l~~~L~ 260 (714)
|+ ++. .++.++.|.++|++++.
T Consensus 152 D~dnq~~~t~~ri~~W~~~l~~e~~ 176 (179)
T d1yoba1 152 DLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp CTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred cccCchhhhHHHHHHHHHHHHHHhC
Confidence 33 332 47889999999887654
|
| >d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Probab=99.94 E-value=1.4e-26 Score=220.19 Aligned_cols=151 Identities=27% Similarity=0.517 Sum_probs=125.4
Q ss_pred CCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhc-----CCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC-CcEEEE
Q 005109 558 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-----GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIV 631 (714)
Q Consensus 558 lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~-----~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~-~~~l~~ 631 (714)
||.|+++|+||||+|||||||+|||+++...... ....++++||||||+.+ |++|.+|+.++..... .+.+++
T Consensus 1 lP~d~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~-d~~~~~e~~~~~~~~~~~~~~~~ 79 (162)
T d2bmwa2 1 LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEELEEIQQKYPDNFRLTY 79 (162)
T ss_dssp CCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEE
T ss_pred CCcCCCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchh-HHHHHHHHHHHHHhcCCceEEEE
Confidence 6888999999999999999999999998754321 22347899999999997 9999999999887655 456677
Q ss_pred EEecCCC----CcccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 005109 632 AFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMT 706 (714)
Q Consensus 632 a~Sr~~~----~k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~ 706 (714)
+.+++.. .+.++++...+....++..+ ..++.|||||| ++|+++|.+.|.+++.+.+.. +++++++|++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~g~~~~~~----~~~~~~~l~~~ 154 (162)
T d2bmwa2 80 AISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEGVT----WSDYQKDLKKA 154 (162)
T ss_dssp EETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHT
T ss_pred EeecccccccCCcchhhhhHHHHHHHHhhhcccCCCEEEEECC-HHHHHHHHHHHHHhhcccCcc----HHHHHHHHHHC
Confidence 7777543 46788888888777777655 57889999999 899999999999998766543 67799999999
Q ss_pred CCeEEecC
Q 005109 707 GRYLRDVW 714 (714)
Q Consensus 707 gRy~~DvW 714 (714)
|||++|||
T Consensus 155 ~r~~~e~~ 162 (162)
T d2bmwa2 155 GRWHVETY 162 (162)
T ss_dssp TCEEEEEC
T ss_pred CCeEEecC
Confidence 99999999
|
| >d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Synechococcus elongatus PCC 7942 [TaxId: 1140]
Probab=99.94 E-value=3.8e-27 Score=226.84 Aligned_cols=142 Identities=22% Similarity=0.372 Sum_probs=122.2
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
.||.|+|||||||||.+|++|++.+...+ . +++.++++++. .++.+++.+||++||||+|++|+|+..|++
T Consensus 1 aKI~I~YgS~tGnTe~vA~~ia~~l~~~~--~-v~i~~~~~~~~------~~l~~~d~li~g~sT~g~Ge~p~~~~~f~~ 71 (169)
T d1czna_ 1 AKIGLFYGTQTGVTQTIAESIQQEFGGES--I-VDLNDIANADA------SDLNAYDYLIIGCPTWNVGELQSDWEGIYD 71 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTSTT--T-EEEEEGGGCCG------GGGGGCSEEEEECCEETTTEECHHHHHHGG
T ss_pred CcEEEEEECCCchHHHHHHHHHHHhhhCC--C-eeEEecccccc------ccccccCeEEEEecCCCCCCCcHHHHHHHh
Confidence 37999999999999999999999998765 2 68889988875 457889999999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCc--hhHHHHHHHHHHHHHHHcCCcccccc-------------------ccc-cCC-
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILANQGAKRLVPV-------------------GLG-DDD- 241 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~--Y~~f~~~~k~ld~~L~~lGa~~~~~~-------------------g~g-D~~- 241 (714)
+|. ...++++++++||+||+. |++||.++++++++|+++||+++... |++ |++
T Consensus 72 ~l~----~~~l~~k~~a~fglGd~~~~y~~F~~a~~~l~~~l~~~Ga~~ig~~~~~~y~~~~s~a~~~~~f~GL~lD~d~ 147 (169)
T d1czna_ 72 DLD----SVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDN 147 (169)
T ss_dssp GGG----GSCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTT
T ss_pred hhh----cccCCCceEEEEEecCCcccchhhhhHHHHHHHHHHhCCCceecCccCCCcccccchhccCCeEEeeeccccC
Confidence 997 557999999999999985 79999999999999999999999763 332 332
Q ss_pred CC--chhhHHHHHHHHHHHH
Q 005109 242 QC--IEDDFSAWRELVWPEL 259 (714)
Q Consensus 242 ~~--~e~~f~~W~~~l~~~L 259 (714)
+. .++.++.|.++|++++
T Consensus 148 ~~~~t~~ri~~W~~~l~~e~ 167 (169)
T d1czna_ 148 QPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp CGGGHHHHHHHHHHHHHHHT
T ss_pred chhhhHHHHHHHHHHHHHHh
Confidence 22 3677999999998865
|
| >d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.1e-26 Score=224.85 Aligned_cols=141 Identities=25% Similarity=0.373 Sum_probs=120.4
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~ 185 (714)
+|.|+|||||||||.+|++|++++...+ +++.++++++. +++.+++.+||++||||+|++|+|+..|+..
T Consensus 2 ~vgIlYgS~TGnte~vA~~ia~~l~~~~----~~v~~~~~~~~------~~l~~~~~~i~~~sT~g~Ge~p~~~~~~~~~ 71 (175)
T d1ag9a_ 2 ITGIFFGSDTGNTENIAKMIQKQLGKDV----ADVHDIAKSSK------EDLEAYDILLLGIPTWYYGEAQCDWDDFFPT 71 (175)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHCTTT----EEEEEGGGCCH------HHHHTCSEEEEECCEETTTEECHHHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHHHHHhccCC----cEEEEccchhh------hccccccEEEEEecccCCCCCchHHHHHHhh
Confidence 5899999999999999999999997643 67889988875 4578999999999999999999999999999
Q ss_pred HHhccCCCccCCceEEEEeccCCch--hHHHHHHHHHHHHHHHcCCcccccc--------------------ccc-cCC-
Q 005109 186 FTEKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPV--------------------GLG-DDD- 241 (714)
Q Consensus 186 L~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~~~~~--------------------g~g-D~~- 241 (714)
+. ...|++++|||||+||+.| ++||.+++.++++|.++||+++... |++ |++
T Consensus 72 l~----~~~l~~~~~avfglGd~~~~~~~F~~a~~~l~~~l~~~Ga~~iG~~~~~gy~f~~s~a~~~~~~~~gL~~D~dn 147 (175)
T d1ag9a_ 72 LE----EIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDR 147 (175)
T ss_dssp HT----TCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTTT
T ss_pred cc----ccccCCCcEEEEEccCCchhhhHHHHHHHHHHHHHHhcCCEEecccCCCCcccccchhhccCCeeeeeeecccc
Confidence 86 5679999999999999985 7999999999999999999998542 111 222
Q ss_pred CC--chhhHHHHHHHHHHHHH
Q 005109 242 QC--IEDDFSAWRELVWPELD 260 (714)
Q Consensus 242 ~~--~e~~f~~W~~~l~~~L~ 260 (714)
+. .++.++.|.++|+++|.
T Consensus 148 ~~~~t~~ri~~W~~~l~~e~~ 168 (175)
T d1ag9a_ 148 QPELTAERVEKWVKQISEELH 168 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHhC
Confidence 21 45678999999998875
|
| >d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Anabaena, pcc 7119 and 7120 [TaxId: 1163]
Probab=99.91 E-value=1.4e-24 Score=209.05 Aligned_cols=142 Identities=23% Similarity=0.376 Sum_probs=121.4
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHH
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~ 184 (714)
|||.|+|||+|||||.+|+.|++.+...+ +++.++++++. +++.+++.+||++||||+|++|++++.|+.
T Consensus 2 KKI~I~YgS~tGnTe~vA~~I~~~l~~~~----~~v~~i~~~~~------~~l~~~d~~i~g~sT~g~G~~p~~~~~~~~ 71 (169)
T d1oboa_ 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDV----VTLHDVSQAEV------TDLNDYQYLIIGCPTLNIGELQSDWEGLYS 71 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTTT----EEEEETTTCCG------GGGGGCSEEEEEEEEETTTEECHHHHHHHT
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccCC----ceEEEcccCCh------hhhccCCEEEEEEecCCCCCCChhHHHhhh
Confidence 78999999999999999999999996543 68899998886 458899999999999999999999999999
Q ss_pred HHHhccCCCccCCceEEEEeccCCc--hhHHHHHHHHHHHHHHHcCCccccc-------------------cccc-cCCC
Q 005109 185 WFTEKEGGEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILANQGAKRLVP-------------------VGLG-DDDQ 242 (714)
Q Consensus 185 ~L~~~~~~~~l~~~~~aVFGlGds~--Y~~f~~~~k~ld~~L~~lGa~~~~~-------------------~g~g-D~~~ 242 (714)
.+. ...++++++++||+||+. |++||.+++.+.++|.++||+.+.. +|++ |++.
T Consensus 72 ~l~----~~~l~~k~~a~fg~Gd~~~~~e~f~~a~~~l~~~l~~~g~~~ig~~~~~g~~f~~s~~~~~~~fiGl~lD~d~ 147 (169)
T d1oboa_ 72 ELD----DVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDN 147 (169)
T ss_dssp TGG----GCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTT
T ss_pred hhc----ccCCCCCceeEEeccCCcchhhhHhhhHHHHHHHHHhcCCcccccccCCCccccccccccCCeEEecCcCccC
Confidence 986 456999999999999986 6999999999999999999998754 1222 3222
Q ss_pred ---CchhhHHHHHHHHHHHHH
Q 005109 243 ---CIEDDFSAWRELVWPELD 260 (714)
Q Consensus 243 ---~~e~~f~~W~~~l~~~L~ 260 (714)
-.++.+++|.++|++++.
T Consensus 148 ~~e~t~eri~~Wv~~i~~e~~ 168 (169)
T d1oboa_ 148 QSDLTDDRIKSWVAQLKSEFG 168 (169)
T ss_dssp CGGGHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHhC
Confidence 146788999999988763
|
| >d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Helicobacter pylori [TaxId: 210]
Probab=99.88 E-value=1.2e-23 Score=200.90 Aligned_cols=134 Identities=26% Similarity=0.389 Sum_probs=108.9
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHH
Q 005109 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (714)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~ 185 (714)
||.|+|||||||||.+|++|++++. .+++++++++++ .++.+++.+||++||||+|++|+|+..|+..
T Consensus 2 KI~I~YgS~tGnte~vA~~ia~~~~------~~~v~~i~~~~~------~~l~~~d~li~~~sT~g~G~~p~~~~~~~~~ 69 (163)
T d1fuea_ 2 KIGIFFGTDSGNAEAIAEKISKAIG------NAEVVDVAKASK------EQFNGFTKVILVAPTAGAGDLQTDWEDFLGT 69 (163)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHC------SEEEEEGGGCCH------HHHTTCSEEEEEEEBCGGGCBCHHHHHHHTT
T ss_pred eEEEEEECCCcHHHHHHHHHHHhcC------CCeEEehhhccc------hhhccCceEEEecccCCCCCCCHhHHHHHhh
Confidence 6999999999999999999998873 257889988885 4578999999999999999999999999998
Q ss_pred HHhccCCCccCCceEEEEeccCCch--hHHHHHHHHHHHHHHHcCCcccccc-------------------ccc-cCC-C
Q 005109 186 FTEKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPV-------------------GLG-DDD-Q 242 (714)
Q Consensus 186 L~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~~~~~-------------------g~g-D~~-~ 242 (714)
+. ...|++++||||||||+.| ++||.+...+... ..||+.+... |++ |+| +
T Consensus 70 l~----~~~l~g~~~avfglGd~~~~~~~f~~a~~~~~~~--~~ga~~vg~~~~~g~~~~~s~a~~~~~~vgl~lD~d~q 143 (163)
T d1fuea_ 70 LE----ASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEK--AKAGKVVGQTSTDGYHFAASKAVEGGKFVGLVIDEDNQ 143 (163)
T ss_dssp CC----THHHHTSEEEEEEECCTTTTTBSTTCHHHHHHHH--HTTSEECCCBCCTTCCCSBCTTBSSSSBSSEEECTTTC
T ss_pred cc----cccCCCCeEEEEEecCcccccccchhhhHHHHHH--hcCCccccccCCCCcccchhhhccCCEEEecccccccC
Confidence 85 5679999999999999984 7999998888654 4688876431 222 222 2
Q ss_pred C--chhhHHHHHHHHHH
Q 005109 243 C--IEDDFSAWRELVWP 257 (714)
Q Consensus 243 ~--~e~~f~~W~~~l~~ 257 (714)
. .++.++.|.++|.+
T Consensus 144 ~~~te~ri~~W~~~lk~ 160 (163)
T d1fuea_ 144 DDLTDERIAKWVEQVRG 160 (163)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHH
Confidence 2 46779999988754
|
| >d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavoprotein NrdI domain: Flavoprotein NrdI species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=2.7e-24 Score=198.39 Aligned_cols=126 Identities=18% Similarity=0.173 Sum_probs=92.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
+..|.|+|||||||||.||++|+... ..... ..+...+.+||++||||+|++|+++++|+
T Consensus 8 ~~~i~I~Y~S~TGnae~~A~~l~~~~---------~~~~~-----------~~~~~~~~~ilitsT~G~Ge~P~~~~~F~ 67 (135)
T d1rlja_ 8 NAMVQIIFDSKTGNVQRFVNKTGFQQ---------IRKVD-----------EMDHVDTPFVLVTYTTNFGQVPASTQSFL 67 (135)
T ss_dssp HSCCEEEECCSSSHHHHHHTTSCCSE---------EEETT-----------SCSCCCSCEEEEECCBGGGBCCHHHHHHH
T ss_pred CCeEEEEEECCchhHHHHHHHHhhhh---------hcccc-----------cccccccceEEEecCCCCCCCCHHHHHHH
Confidence 35689999999999999998764211 11111 11234456899999999999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCch-hHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhh
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 262 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 262 (714)
++|. +++|||||+||++| ++||++++.++++| ++..+...-. ..+....+.|..|.+++|..+...
T Consensus 68 ~~l~---------~~~~aV~G~Gd~~y~~~Fc~a~~~i~~~~---~~~~~~~~E~-~g~~~D~e~~~~~v~~~~~~~~~~ 134 (135)
T d1rlja_ 68 EKYA---------HLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILHKFEL-SGTSKDVELFTQEVERVVTKSSAK 134 (135)
T ss_dssp HHHG---------GGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEEEEET-TCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred Hhcc---------ccceEEEEeCCchHHHHHHHHHHHHHHHh---CCCceEeeec-CCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9874 47899999999999 69999999999987 4444432211 111122578899999998887643
|
| >d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Methane monooxygenase component C, MmoC species: Methylococcus capsulatus [TaxId: 414]
Probab=99.85 E-value=1.7e-21 Score=181.38 Aligned_cols=119 Identities=18% Similarity=0.286 Sum_probs=99.0
Q ss_pred ccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEec
Q 005109 556 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 635 (714)
Q Consensus 556 F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr 635 (714)
|.|+++..+|+||||+|||||||+||+++....+.. ++++||||+|+.+ |++|++||++|.+....++++.+++|
T Consensus 1 F~l~~~~~~p~vliagGtGItP~~s~l~~~~~~~~~----~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~~ 75 (141)
T d1tvca2 1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAP----NETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKACVWH 75 (141)
T ss_dssp CSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHTCC----SCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEECCSS
T ss_pred CCCCCCCCCcEEEEECchhHHHHHHHHHHHHHcCCC----CceEEEeecccch-hhhhHHHHHHHHhhccccccceeecc
Confidence 789999999999999999999999999998776532 6899999999998 99999999999988777899999998
Q ss_pred CCC----CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 636 EGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 636 ~~~----~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+.. .++++++.+.+.. . ....+..||+||| ++|+++|.+.|.+.
T Consensus 76 ~~~~~~~~~g~~~~~~~~~~---~-~~~~~~~vyiCGp-~~m~~~v~~~l~~~ 123 (141)
T d1tvca2 76 PSGDWEGEQGSPIDALREDL---E-SSDANPDIYLCGP-PGMIDAACELVRSR 123 (141)
T ss_dssp CSSCCSSSSSSSSHHHHHHH---H-HSSSSSEEEEESS-HHHHHHHHHHHHHH
T ss_pred cccCcCCccchhHHHHHHhc---c-cccccceeeccCC-HHHHHHHHHHHHHc
Confidence 643 4567777665531 1 1235678999999 99999999988654
|
| >d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Probab=99.83 E-value=6e-21 Score=175.87 Aligned_cols=113 Identities=27% Similarity=0.379 Sum_probs=94.9
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC--
Q 005109 561 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP-- 638 (714)
Q Consensus 561 ~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~-- 638 (714)
+.++|+||||+|||||||+||+++....+.. ++++||||+|+++ |++|.+||+++.++...+++++++|+++.
T Consensus 3 d~~rplv~IAgG~GItP~~s~l~~~~~~~~~----~~i~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~ 77 (133)
T d1krha2 3 DVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE----HPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTVVAHAESQH 77 (133)
T ss_dssp CCSSCEEEEEEGGGHHHHHHHHHHHHHHCCS----SCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEEETTCCSSS
T ss_pred CCCCCEEEEEccHhHHHHHHHHHHHHHcCCC----CceEEEEeecchh-HHHHHHHHHHHHHhCCceeeeeeeecccccc
Confidence 4578999999999999999999998775432 6899999999997 99999999999988888899999998653
Q ss_pred -CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 639 -TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 639 -~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.++|+++.+.+.. .+ ..+..||+||| ++|+++|.+.|.+.
T Consensus 78 ~~~g~v~~~i~~~~---~~--~~~~~vyiCGp-~~m~~~v~~~L~~~ 118 (133)
T d1krha2 78 ERKGYVTGHIEYDW---LN--GGEVDVYLCGP-VPMVEAVRSWLDTQ 118 (133)
T ss_dssp SEESCSGGGCCGGG---GG--GGCSEEEEEEE-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhh---cc--cccceEEEECC-HHHHHHHHHHHHHc
Confidence 3578888776542 11 34678999999 99999999998775
|
| >d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: NAD(P)H:flavin oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.8e-19 Score=165.95 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=90.8
Q ss_pred CCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCC-
Q 005109 560 ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP- 638 (714)
Q Consensus 560 ~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~- 638 (714)
++..+|+||||+|||||||+||+++++..... ++++||||+|+.+ |++|.+++.++..+...+.+.++.++...
T Consensus 2 ed~~rplv~IagGtGiaP~~s~l~~~~~~~~~----~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 76 (135)
T d1qfja2 2 DDEERPMILIAGGTGFSYARSILLTALARNPN----RDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVVEQPEAG 76 (135)
T ss_dssp SCSSSCEEEEEETTCHHHHHHHHHHHHHHCTT----CCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEESSCCTT
T ss_pred CCCCCCEEEEECceeHHHHHHHHHHHHHcccc----cceeEEEecccHh-HHHHHHHHHHHHHhcCccceeeeecccCcc
Confidence 36689999999999999999999998875433 7899999999998 99999999999988877777777776543
Q ss_pred ---CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHH
Q 005109 639 ---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH 682 (714)
Q Consensus 639 ---~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~ 682 (714)
.++|+++.+.+.. . ...+..+|+||| ++|+++|.+.|.
T Consensus 77 ~~~~~g~~~~~~~~~~---~--~~~~~~~yvCGp-~~m~~~~~~~L~ 117 (135)
T d1qfja2 77 WRGRTGTVLTAVLQDH---G--TLAEHDIYIAGR-FEMAKIARDLFC 117 (135)
T ss_dssp CCSEESCHHHHHHHHC---S--CCTTCEEEEESC-HHHHHHHHHHHH
T ss_pred cccccCchHHHHHHhc---c--CcccCceEeeCC-HHHHHHHHHHHH
Confidence 3567776665431 1 135789999999 999999988774
|
| >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Megasphaera elsdenii [TaxId: 907]
Probab=99.78 E-value=5.8e-19 Score=163.15 Aligned_cols=132 Identities=17% Similarity=0.216 Sum_probs=107.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchH-HHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNA-ARFYKW 185 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna-~~F~~~ 185 (714)
|.|+|+|+|||||++|+.|++.+.+.+ ..++++|+.++++ .++.+++.+||++||||.|.+|+++ ..|++.
T Consensus 2 V~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~ii~g~pT~~~g~~p~~~~~~~~~~ 73 (137)
T d2fz5a1 2 VEIVYWSGTGNTEAMANEIEAAVKAAG--ADVESVRFEDTNV------DDVASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTT--CCEEEEETTSCCH------HHHHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhcC--CceEEeehhhHHH------hhhhccceEEEEEecccCCcCChhHHHHHHHH
Confidence 789999999999999999999999876 5678999998875 4577899999999999999999875 567777
Q ss_pred HHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHH
Q 005109 186 FTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 255 (714)
Q Consensus 186 L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l 255 (714)
+. ..++++++++||+|+..| +.+.+.++++|+++|++.+.+....+...+. +...+|-+.|
T Consensus 74 ~~-----~~~~gk~~~~fgs~g~~~---~~a~~~l~~~l~~~G~~~v~~~~~~~~~~d~-~~~~e~g~~l 134 (137)
T d2fz5a1 74 LA-----PKLKGKKVGLFGSYGWGS---GEWMDAWKQRTEDTGATVIGTAIVNEMPDNA-PECKELGEAA 134 (137)
T ss_dssp HG-----GGCSSCEEEEEEEESSCC---SHHHHHHHHHHHHTTCEEEEEEEEESSSSSC-THHHHHHHHH
T ss_pred hc-----cccCCCeEEEEEecCCCc---CHHHHHHHHHHHHCCCEEeeceeecCCCChH-HHHHHHHHHH
Confidence 74 358999999999888766 4556889999999999999987766654333 3455554443
|
| >d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.9e-19 Score=168.22 Aligned_cols=116 Identities=19% Similarity=0.265 Sum_probs=85.3
Q ss_pred CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcE-EEEEEecCCCC--
Q 005109 563 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ-LIVAFSREGPT-- 639 (714)
Q Consensus 563 ~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~-l~~a~Sr~~~~-- 639 (714)
.++|||||+|||||||+||++++...+. .++++||||||+.+ |++|.+|++++.+....+. +.++.+++...
T Consensus 6 ~k~lvlIa~GtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T d1fdra2 6 CETLWMLATGTAIGPYLSILRLGKDLDR----FKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLRIQTVVSRETAAGS 80 (148)
T ss_dssp CSEEEEEEEGGGGHHHHHHHHHCCSCTT----CSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEEEEEEESSSCCTTE
T ss_pred CCEEEEEEcCeEHHHHHHHHHHHHHhCC----CCcEEEEEecCcHH-HHHHHHHhhhHHHhccccccccccccCcccccc
Confidence 4789999999999999999998765442 37999999999998 9999999999988765444 44555665432
Q ss_pred -cccccchhhhc--hHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 640 -KEYVQHKMMEK--SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 640 -k~yVq~~l~e~--~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
.+++++.+... .+.+...+ .+.+.|||||| ++|+++|.+.|.+.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~e~ 128 (148)
T d1fdra2 81 LTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKET 128 (148)
T ss_dssp EESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHhhccccccccceEEEECC-HHHHHHHHHHHHHh
Confidence 23444444332 12222222 45678999999 99999999988764
|
| >d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=4.3e-19 Score=164.96 Aligned_cols=118 Identities=15% Similarity=0.227 Sum_probs=91.7
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCC-
Q 005109 561 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT- 639 (714)
Q Consensus 561 ~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~- 639 (714)
..++|+||||+|||||||+||++++...+.. ++++||||+|+.+ |.+|.+|+.++.++...+.++.+++++...
T Consensus 4 ~~d~plv~IagGtGiaP~~s~l~~l~~~~~~----~~i~l~~~~r~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T d1gvha3 4 ADDTPVTLISAGVGQTPMLAMLDTLAKAGHT----AQVNWFHAAENGD-VHAFADEVKELGQSLPRFTAHTWYRQPSEAD 78 (143)
T ss_dssp CTTCCEEEEEEGGGGHHHHHHHHHHHHHTCC----SCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEEEEEEESSCCHHH
T ss_pred CCCCCEEEEEchhhHHHHHHHHHHHHHcCCC----ceEEEEeecCCHH-HHHHHHHHHHHHHhCCceEEEEEEeccCccc
Confidence 3468999999999999999999998876532 7899999999998 999999999999988888889998876431
Q ss_pred --cccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 640 --KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 640 --k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
+.++++........+.+.. .++..+|+||| ++|+++|.+.|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iCGp-~~m~~~v~~~L~~~ 125 (143)
T d1gvha3 79 RAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGP-VGFMQFTAKQLVDL 125 (143)
T ss_dssp HHHTCCSEESSCCGGGSSSCCCCTTCEEEEESC-HHHHHHHHHHHHHT
T ss_pred ccccceeeeccccHHHHHhcccccCcEEEEeCc-HHHHHHHHHHHHHc
Confidence 2333333322222222222 45789999999 99999999888764
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=3e-19 Score=167.29 Aligned_cols=145 Identities=17% Similarity=0.094 Sum_probs=115.0
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchH-HHHhhcCCCeEEEEEeCCCCCCCCchHHH
Q 005109 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDE-YEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (714)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~-~~~~l~~~~~vif~~sTyG~G~~pdna~~ 181 (714)
.+.+|+|+|+|+|||||.+|+.|++++.+.| ..++++++.+++.++.. ...++.+++.+||++|||+ |++|+.+..
T Consensus 2 ~~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~l~~~d~iiigspt~~-~~~~~~~~~ 78 (148)
T d1vmea1 2 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKG--FTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYE-AEIHPLMRF 78 (148)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTT--CEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECEET-TEECHHHHH
T ss_pred CCCEEEEEEECCCcHHHHHHHHHHHHHHhCC--CeEEEEecccccccchhHhhhhHHHCCEeEEEecccC-CccCchHHH
Confidence 3578999999999999999999999999886 56788888877754422 2456889999999999995 777778999
Q ss_pred HHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCchhhHHHHHHHHHHHH
Q 005109 182 FYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 259 (714)
Q Consensus 182 F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L 259 (714)
|+..+. ...++++++++|| +|.|||.+++.+++.|.++|++++.+... ......++.++.|.+.+-+.|
T Consensus 79 ~l~~~~----~~~~~~k~~~~fg----s~g~~~~a~~~~~~~l~~~G~~~v~~~~~-~~~~~de~~~~e~~~~~~k~l 147 (148)
T d1vmea1 79 TLLEII----DKANYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSFTEI-KGSNMDERKIEEAISLLKKEL 147 (148)
T ss_dssp HHHHHH----HHCCCCCEEEEEE----ECCCCCCC-CCHHHHHHTSSCEEEEEEEE-CSTTCCTHHHHHHHHHHHHHH
T ss_pred HHHHHh----hcccCCCEEEEEE----cCCCccchHHHHHHHHHHcCCcEEeeEEE-eCCCCCHHHHHHHHHHHHHhc
Confidence 999886 3458899999999 68899999999999999999998765432 222233566777777665544
|
| >d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.76 E-value=9.2e-19 Score=162.36 Aligned_cols=116 Identities=24% Similarity=0.411 Sum_probs=88.5
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCCCC-
Q 005109 561 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT- 639 (714)
Q Consensus 561 ~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~~~- 639 (714)
+..+|+||||+|||||||+||++++.... ..+++|+||+|+++ |++|.+++.++.+....++++++++++...
T Consensus 3 d~~~plvliagGtGIaP~~sil~~~~~~~-----~~~i~li~~~r~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (142)
T d1cqxa3 3 DAKTPIVLISGGVGLTPMVSMLKVALQAP-----PRQVVFVHGARNSA-VHAMRDRLREAAKTYENLDLFVFYDQPLPED 76 (142)
T ss_dssp TCCSCEEEEESSCCHHHHHHHHHHHTCSS-----CCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEEEEEEESSCCTTC
T ss_pred CCCCCEEEEEcceeHHHHHHHHHHHHHcC-----CCcEEEEeeccChh-hhhhHHHHHHHHHhCCCeEEEEEEcccCCcc
Confidence 56799999999999999999998765422 26899999999998 999999999999988888999999986532
Q ss_pred ---cccccchhhhchHHHHhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005109 640 ---KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 684 (714)
Q Consensus 640 ---k~yVq~~l~e~~~~l~~~i-~~~~~iyvCGpa~~M~~~V~~~L~~i 684 (714)
..+....... ...+.+.+ ..++.||+||| ++|+++|.+.|.+.
T Consensus 77 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 123 (142)
T d1cqxa3 77 VQGRDYDYPGLVD-VKQIEKSILLPDADYYICGP-IPFMRMQHDALKNL 123 (142)
T ss_dssp CBTTTBSEESSCC-GGGSHHHHCCTTCEEEEESS-HHHHHHHHHHHHHT
T ss_pred cccccccchhhhH-HHHHHhhcccCCceEEEECC-hhHHHHHHHHHHHc
Confidence 1122211111 11222222 46789999999 99999999988664
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=99.74 E-value=4.5e-18 Score=159.85 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=120.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
+++|+|+|+|+|||||.+|+.|++.+.+.+ ..+.++++.+.+.++ ....+.+++++||++||| .|.+++.+..|+
T Consensus 2 ~~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g--~ev~~~~~~~~~~~~--~~~~l~~~d~vi~Gspt~-~~~~~~~~~~~l 76 (152)
T d1e5da1 2 TNKVVIFYDSMWHSTEKMARVLAESFRDEG--CTVKLMWCKACHHSQ--IMSEISDAGAVIVGSPTH-NNGILPYVAGTL 76 (152)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEETTTSCHHH--HHHHHHTCSEEEEECCCB-TTBCCHHHHHHH
T ss_pred CCeEEEEEECCCcHHHHHHHHHHHHHhhCC--CEEEEeecccCChhh--hccchhhCCEEEEecccc-CCccCchhHHHH
Confidence 578999999999999999999999999876 678889998877533 345678999999999999 678888899999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCC--CchhhHHHHHHHHHHHHHh
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDN 261 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~ 261 (714)
+.+. ...++++.+++|| +|.|+|.+.+.+++.|.++|++.+.+....+... ...+...+|...|...|++
T Consensus 77 ~~~~----~~~~~~k~~~~fg----s~g~~~~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~e~g~~i~~~lk~ 148 (152)
T d1e5da1 77 QYIK----GLRPQNKIGGAFG----SFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALKA 148 (152)
T ss_dssp HHHH----HTCCCSCEEEEEE----EESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh----ccCCCCCEEEEEE----eeCCCCccHHHHHHHHHHCCCEEecCcEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9887 3458899999999 5889999999999999999999987755444322 2344567888888877776
Q ss_pred hh
Q 005109 262 LL 263 (714)
Q Consensus 262 ~~ 263 (714)
..
T Consensus 149 k~ 150 (152)
T d1e5da1 149 KL 150 (152)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: cytochrome b5 reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.7e-18 Score=160.55 Aligned_cols=116 Identities=19% Similarity=0.308 Sum_probs=86.8
Q ss_pred CCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcC-CCcEEEEEEecCCCC
Q 005109 561 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLIVAFSREGPT 639 (714)
Q Consensus 561 ~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g-~~~~l~~a~Sr~~~~ 639 (714)
+..++|+|||+|||||||+|++++.+.... ..++++|+||+|+.+ |++|++||+++++.. ..++++.+.+++...
T Consensus 16 ~~~k~i~lIagGtGItP~~s~l~~~l~~~~---~~~~i~L~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~ 91 (147)
T d1umka2 16 RTVKSVGMIAGGTGITPMLQVIRAIMKDPD---DHTVCHLLFANQTEK-DILLRPELEELRNKHSARFKLWYTLDRAPEA 91 (147)
T ss_dssp EECSEEEEEEEGGGHHHHHHHHHHHHTCTT---CCCEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEEESSCCSS
T ss_pred ccCCeEEEEECCeecchHHHHHHHHHhcCC---CCceEEEEEEeCccc-cchhHHHHhhhhhhcCcceEEEEEecccccC
Confidence 345789999999999999999999875432 236899999999997 999999999998764 566788888876542
Q ss_pred ----cccccchhhhchHHHHhcccCCcEEEEecCchhhHHH-HHHHHHHH
Q 005109 640 ----KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHTI 684 (714)
Q Consensus 640 ----k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~-V~~~L~~i 684 (714)
++++++.+.+. .+.....+..+|+||| ++|++. +++.|.++
T Consensus 92 ~~~~~g~~~~~~l~~---~~~~~~~~~~vyiCGP-~~m~~~~~~~~L~~~ 137 (147)
T d1umka2 92 WDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHV 137 (147)
T ss_dssp CSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHH
T ss_pred cccceeehHHHHHHH---hcCCCcCCcEEEEeCC-HHHHHHHHHHHHHHc
Confidence 45554443221 1111245789999999 999975 67777665
|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Clostridium beijerinckii [TaxId: 1520]
Probab=99.73 E-value=1.1e-17 Score=154.55 Aligned_cols=132 Identities=16% Similarity=0.200 Sum_probs=104.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchH-HHHHHH
Q 005109 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNA-ARFYKW 185 (714)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna-~~F~~~ 185 (714)
+.|+|+|+||||+++|+.|++.+.+.+ ..+.++++++++. .++.+++.+||++||||+|.+|+++ ..|++.
T Consensus 1 i~IvY~S~tGnT~~vA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~~~~i~g~pt~~~g~~p~~~~~~~~~~ 72 (138)
T d5nula_ 1 MKIVYWSGTGNTEKMAELIAKGIIESG--KDVNTINVSDVNI------DELLNEDILILGCSAMTDEVLEESEFEPFIEE 72 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTT--CCCEEEEGGGCCH------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHH
T ss_pred CEEEEECcChHHHHHHHHHHHHHHhcC--Ccceecccccccc------cccccCCeEEEEEeccCCCCCChHHHHHHHHH
Confidence 479999999999999999999999876 5678999988875 4578899999999999999998874 556555
Q ss_pred HHhccCCCccCCceEEEEeccCCchh-HHHHHHHHHHHHHHHcCCccccccccccCCCC-chhhHHHHHHHH
Q 005109 186 FTEKEGGEWLQKLKYGVFGLGNRQYE-HFNKIAKVVDEILANQGAKRLVPVGLGDDDQC-IEDDFSAWRELV 255 (714)
Q Consensus 186 L~~~~~~~~l~~~~~aVFGlGds~Y~-~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~-~e~~f~~W~~~l 255 (714)
+. ..++++++++||. |. .||.+.+.++++|.++|++++.+....+...+ ..+...+|-+.|
T Consensus 73 ~~-----~~~~gk~~~~f~s----~g~~~~~~~~~~~~~l~~~G~~~v~~~~~~~~~p~e~~~~~~~~g~~l 135 (138)
T d5nula_ 73 IS-----TKISGKKVALFGS----YGWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPDEAEQDCIEFGKKI 135 (138)
T ss_dssp HG-----GGCTTCEEEEEEE----ESSSCSHHHHHHHHHHHHTTCEECSCCEEEESSCGGGHHHHHHHHHHH
T ss_pred hC-----ccCCCCcEEEEEE----ecCCCCHHHHHHHHHHHHCCCEEecCcEEECCCCcHHHHHHHHHHHHH
Confidence 53 4578999999994 43 35888999999999999999998776654332 233455565443
|
| >d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Phthalate dioxygenase reductase species: Pseudomonas cepacia, db01 [TaxId: 292]
Probab=99.72 E-value=2.1e-18 Score=155.36 Aligned_cols=109 Identities=16% Similarity=0.240 Sum_probs=80.8
Q ss_pred CccCCCCCCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005109 555 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 634 (714)
Q Consensus 555 ~F~lp~~~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~S 634 (714)
+|.|++ ..+|+||||+|||||||+|+++++..... .+++|+||+|+++ |++|.+||+++.....+ ...+.
T Consensus 1 dF~l~~-~~~~~v~IagGtGiaP~~s~~~~l~~~~~-----~~~~l~~~~r~~~-~~~~~~~l~~~~~~~~~---~~~~~ 70 (120)
T d2piaa2 1 EFPLDK-RAKSFILVAGGIGITPMLSMARQLRAEGL-----RSFRLYYLTRDPE-GTAFFDELTSDEWRSDV---KIHHD 70 (120)
T ss_dssp CSCCCT-TCSEEEEEEEGGGHHHHHHHHHHHHHHCS-----SEEEEEEEESCGG-GCTTHHHHHSTTTTTTE---EEEEC
T ss_pred CCCCCC-CCCCEEEEEecccHHHHHHHHHHHHHhcC-----CCeEEEEeeCCHH-HhhhhHHHHHHhhCCCe---EEeee
Confidence 488886 57899999999999999999999866431 5799999999998 99999999998765433 33333
Q ss_pred cCCC-CcccccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHH
Q 005109 635 REGP-TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH 682 (714)
Q Consensus 635 r~~~-~k~yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~ 682 (714)
.... ....+... .....++..+|+||| ++|+++|++.+.
T Consensus 71 ~~~~~~~~~~~~~--------~~~~~~~~~~y~CGp-~~mi~~v~~~~~ 110 (120)
T d2piaa2 71 HGDPTKAFDFWSV--------FEKSKPAQHVYCCGP-QALMDTVRDMTG 110 (120)
T ss_dssp TTCTTSCCCHHHH--------HSSCCTTEEEEEESC-HHHHHHHHHHTT
T ss_pred cCCCcccccHHHH--------hccCCCcCEEEEeCC-HHHHHHHHHHHc
Confidence 3222 22222211 122346889999999 999999998764
|
| >d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Nitrate reductase species: Corn (Zea mays) [TaxId: 4577]
Probab=99.71 E-value=5.9e-18 Score=157.00 Aligned_cols=127 Identities=15% Similarity=0.220 Sum_probs=84.8
Q ss_pred CCccCCCC--CCCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCc-EEE
Q 005109 554 SNFKLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS-QLI 630 (714)
Q Consensus 554 ~~F~lp~~--~~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~-~l~ 630 (714)
|+|.++.. ..+++||||+|||||||+||+++..+... ...++++|+||+|+.+ +.+|.+++..+.+..... ..+
T Consensus 1 G~f~l~~~~~~~k~lv~IAgGtGIaP~~s~l~~~~~~~~--~~~~~v~l~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
T d2cnda2 1 GSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP--EDHTEMHLVYANRTED-DILLRDELDRWAAEYPDRLKVW 77 (146)
T ss_dssp SCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT--TCCCEEEEEEEESCGG-GCTTHHHHHHHHHHCTTTEEEE
T ss_pred CeEEeCCCCCCCCEEEEEeceEEHhHHHHHHHHHHHhCC--ccCceEEEEEeecccc-cchhHHHHhhHHHhCCCceeEE
Confidence 56777533 34799999999999999999999876542 2347899999999998 999999999998775433 333
Q ss_pred EEEecCCC---Ccccccchhh-hchHHHHhcccCCcEEEEecCchhhHHH-HHHHHHHH
Q 005109 631 VAFSREGP---TKEYVQHKMM-EKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHTI 684 (714)
Q Consensus 631 ~a~Sr~~~---~k~yVq~~l~-e~~~~l~~~i~~~~~iyvCGpa~~M~~~-V~~~L~~i 684 (714)
...+.... ...+..+++. +..+...+...++..||+||| ++|++. |++.|.++
T Consensus 78 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGp-~~m~~~av~~~L~~~ 135 (146)
T d2cnda2 78 YVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGP-PPMIQFAISPNLEKM 135 (146)
T ss_dssp EEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECC-HHHHHTTTHHHHHTT
T ss_pred EeeccccCcccccccccCccchHHHHHhcccCCCCcEEEEECC-HHHHHHHHHHHHHHc
Confidence 33332221 1111222221 111122222245678999999 999985 67777653
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=99.71 E-value=1.9e-17 Score=154.97 Aligned_cols=143 Identities=15% Similarity=0.058 Sum_probs=113.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
+.|++|+|+|+||||+++|+.|++++.+.+ ..++++|+.+.+.++ ...++.+++++||++||| .|.+++.++.|+
T Consensus 2 k~K~lIvY~S~~GnT~~vA~~Ia~~l~~~g--~~v~~~~~~~~~~~~--~~~~~~~~d~ii~Gspt~-~g~~~~~~~~~l 76 (149)
T d1ycga1 2 KAKAVIAYDTMWLSTEKMAHALMDGLVAGG--CEVKLFKLSVSDRND--VIKEILDARAVLVGSPTI-NNDILPVVSPLL 76 (149)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGSCHHH--HHHHHHHCSEEEEECCCB-TTBCCGGGHHHH
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHHhcC--CeeEEEEccccchHH--HhhhhhhCCeEEEEeecc-cCCCCHHHHHHH
Confidence 578999999999999999999999999876 568889998877643 345667899999999999 788999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccccccccCCCCch---hhHHHHHHHHHHHH
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIE---DDFSAWRELVWPEL 259 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~gD~~~~~e---~~f~~W~~~l~~~L 259 (714)
+.+. ...++++.+++|| +|.|++.+.+.+.+.|..+|++.+.+.+........+ +...+|-.+|...|
T Consensus 77 ~~l~----~~~~~~k~~~~fg----s~g~~g~a~~~l~~~l~~~g~~~v~~~~~~~~~~P~~~dl~~~~e~g~~ia~kl 147 (149)
T d1ycga1 77 DDLV----GLRPKNKVGLAFG----AYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARI 147 (149)
T ss_dssp HHHH----HHCCSSCEEEEEE----EESSSCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHh----ccccCCCEEEEEe----cccCCchhHHHHHHHHHHCCCEEeccceEEEcccCCHHHHHHHHHHHHHHHHHh
Confidence 9987 3457899999999 6888899999999999999999887643221111123 34456665554443
|
| >d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Maize (Zea mays), root isoform [TaxId: 4577]
Probab=99.70 E-value=1.4e-17 Score=156.70 Aligned_cols=128 Identities=19% Similarity=0.247 Sum_probs=102.7
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|..++|+.|+|+.+++|+..++.+.++||+||+.+ ++.|++||.|+|+|+|...
T Consensus 22 ~y~~~nP~~a~v~~n~~Lt~~~s~k~t~hie~dl~~-~~~y~~Gq~lgI~p~~~~~------------------------ 76 (157)
T d1jb9a1 22 TYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP------------------------ 76 (157)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSSBCT------------------------
T ss_pred cCCCCCCeEEEEEeEEEcccCCCCceEEEEEecCCC-CccEecCceEEEEcCCccc------------------------
Confidence 477899999999999999999999999999999976 8999999999999966210
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
. +
T Consensus 77 ---------~-----------------~---------------------------------------------------- 78 (157)
T d1jb9a1 77 ---------K-----------------K---------------------------------------------------- 78 (157)
T ss_dssp ---------T-----------------S----------------------------------------------------
T ss_pred ---------c-----------------c----------------------------------------------------
Confidence 0 0
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCCCC---eEEEEEEEEEecC----CCCccccCccchhhcccCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS---RIHVTCALVYEKT----PTGRVHKGLCSTWMKNSLPMEK 540 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~---~i~ltv~~v~~~~----~~gr~~~G~~S~~L~~~~~g~~ 540 (714)
.+.+++||.|||||||...++ .++++|+.+.+.+ ..||.+.|+||+||+++.+|+
T Consensus 79 -----------------~~~p~~~R~YSIaSSp~~~~~~~~~~~~~V~~v~~~~~~~~~~~r~~~GvcS~yL~~lk~Gd- 140 (157)
T d1jb9a1 79 -----------------PGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGD- 140 (157)
T ss_dssp -----------------TTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHTCCTTC-
T ss_pred -----------------cCccCCcCEEEecCCCcCCCCCCCEEEEEEEEeeccccccccCCcccCceeehhhccCCCcC-
Confidence 013568999999999986544 5677776554332 357889999999999988876
Q ss_pred CCCCceeeEEEecCC-ccCCCC
Q 005109 541 SNDCSWAPIFVRQSN-FKLPAD 561 (714)
Q Consensus 541 ~~~~~~v~i~v~~~~-F~lp~~ 561 (714)
.+.|+++.|. |.||+|
T Consensus 141 -----~V~i~gp~g~~F~lPed 157 (157)
T d1jb9a1 141 -----KIQLTGPSGKIMLLPEE 157 (157)
T ss_dssp -----EEEEEEEECSTTCCCCS
T ss_pred -----EEEEEecCCCcccCCCC
Confidence 5899999775 888864
|
| >d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Azotobacter vinelandii [TaxId: 354]
Probab=99.65 E-value=4.5e-17 Score=153.27 Aligned_cols=120 Identities=18% Similarity=0.280 Sum_probs=85.6
Q ss_pred CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCC--------CcEEEEEEe
Q 005109 563 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA--------LSQLIVAFS 634 (714)
Q Consensus 563 ~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~--------~~~l~~a~S 634 (714)
.+++||||+|||||||+||++++...+.. ++++++||+|+.+ |.+|.+||..+.+... .+.+....+
T Consensus 7 ~~~lvlIagGtGIaP~~sil~~~~~~~~~----~~~~l~~g~r~~~-~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (158)
T d1a8pa2 7 GKHLYMLSTGTGLAPFMSLIQDPEVYERF----EKVVLIHGVRQVN-ELAYQQFITEHLPQSEYFGEAVKEKLIYYPTVT 81 (158)
T ss_dssp CSEEEEEEEGGGGHHHHHHTTCHHHHHHC----SEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEES
T ss_pred CCCEEEEEchhhHHHHHHHHHHHHHhCCC----CceeeeeccccHH-HHhhHHHHHHHHhhhhhhhhccccceEEEEecc
Confidence 57899999999999999999998876543 7899999999998 9999999988765443 124455555
Q ss_pred cCCCC-cccc-----cchhhhchHHHHh-cccCCcEEEEecCchhhHHHHHHHHHHHHHHhCC
Q 005109 635 REGPT-KEYV-----QHKMMEKSSDIWN-MLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 690 (714)
Q Consensus 635 r~~~~-k~yV-----q~~l~e~~~~l~~-~i~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~ 690 (714)
+.... .+.. ++++.+. .... ....+.+||+||| ++|+++|.+.|.+...+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~yiCGp-~~m~~~v~~~L~~~G~~~~~ 141 (158)
T d1a8pa2 82 RESFHNQGRLTDLMRSGKLFED--IGLPPINPQDDRAMICGS-PSMLDESCEVLDGFGLKISP 141 (158)
T ss_dssp SSCCSSBSCHHHHHHSSHHHHH--HTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBCS
T ss_pred cccccccccccchhccchhhhh--hhccccCcccceEEEECC-HHHHHHHHHHHHHcCCCccC
Confidence 54332 2222 2222211 1111 1246789999999 99999999999987655443
|
| >d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.51 E-value=2.1e-14 Score=131.85 Aligned_cols=119 Identities=18% Similarity=0.307 Sum_probs=98.5
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|+.++|+.++|+.+++|+..++...++||+|++.+ .+.|+||++|+|++++..+
T Consensus 13 ~y~p~~P~~a~V~~~~~lt~~~~~~~t~~i~~~~~~-~~~y~pGQ~v~v~~p~~~~------------------------ 67 (136)
T d1fnda1 13 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGEDK------------------------ 67 (136)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBCT------------------------
T ss_pred eecCCCCeEEEEEeEEEccCCCCCceEEEEecccCC-CCcccCCCEEEEECCCccc------------------------
Confidence 477789999999999999988889999999999954 7999999999999875220
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
++
T Consensus 68 ~~------------------------------------------------------------------------------ 69 (136)
T d1fnda1 68 NG------------------------------------------------------------------------------ 69 (136)
T ss_dssp TS------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCC---CCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 544 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~---~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~ 544 (714)
.++.+|.|||||+|... ++.++++|+.+.+.+..++.+.|+||+||+++++|+
T Consensus 70 -------------------~~~~~R~YSIaSsP~~~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~dLk~GD----- 125 (136)
T d1fnda1 70 -------------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGA----- 125 (136)
T ss_dssp -------------------SBCCCEEEECCSCTTCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTC-----
T ss_pred -------------------ccceeEEeecccCCcCCCCCCcEEEEEEEEeecccCCCcCCCceEehhhccCCCcC-----
Confidence 23457999999999753 467999998887778888888999999999988876
Q ss_pred ceeeEEEecC
Q 005109 545 SWAPIFVRQS 554 (714)
Q Consensus 545 ~~v~i~v~~~ 554 (714)
.+.|.+|.|
T Consensus 126 -~V~v~GP~G 134 (136)
T d1fnda1 126 -EVKLTGPVG 134 (136)
T ss_dssp -EEEEEEEEC
T ss_pred -EEEEeCCCC
Confidence 577777766
|
| >d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Dihydroorotate dehydrogenase B, PyrK subunit domain: Dihydroorotate dehydrogenase B, PyrK subunit species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.46 E-value=3.1e-14 Score=134.49 Aligned_cols=102 Identities=25% Similarity=0.334 Sum_probs=74.9
Q ss_pred CCCeEEEecCCcchhHHHHHHHHHHhhhcCCCCCcEEEEEeeecCCcccchHHHHHHHHHcCCCcEEEEEEecCC-CCcc
Q 005109 563 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG-PTKE 641 (714)
Q Consensus 563 ~~piImIa~GTGIAPfrs~lq~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~g~~~~l~~a~Sr~~-~~k~ 641 (714)
..++||||+|||||||++|++++.+.+ .+++|+||+|+++ |.+|.+||+++... .+++...... ..++
T Consensus 8 ~~kvllIAgG~GitPl~sm~~~l~~~~------~~v~l~~g~r~~~-~~~~~~el~~~~~~----~~~~~~~~~~~~~~g 76 (160)
T d1ep3b2 8 TDKILIIGGGIGVPPLYELAKQLEKTG------CQMTILLGFASEN-VKILENEFSNLKNV----TLKIATDDGSYGTKG 76 (160)
T ss_dssp TSEEEEEEEGGGSHHHHHHHHHHHHHT------CEEEEEEEESSGG-GCCCHHHHHTSTTE----EEEEEETTCSSSEES
T ss_pred CCEEEEEEeeeeHHHHHHHHHHHHhcc------CceEEEEecCCHH-HHHHHHHHHHhhCC----CccccccCccccccc
Confidence 456999999999999999999876543 6799999999997 99999999887532 3333332221 2345
Q ss_pred cccchhhhchHHHHhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005109 642 YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 683 (714)
Q Consensus 642 yVq~~l~e~~~~l~~~i~~~~~iyvCGpa~~M~~~V~~~L~~ 683 (714)
++.+.+.+ .......+|+||| .+|+++|.+.+.+
T Consensus 77 ~v~~~~~~-------~~~~~~~vy~CGP-~~m~~~v~~~~~~ 110 (160)
T d1ep3b2 77 HVGMLMNE-------IDFEVDALYTCGA-PAMLKAVAKKYDQ 110 (160)
T ss_dssp CHHHHHHH-------CCSCCSEEEEESC-HHHHHHHHHHTTT
T ss_pred cHHHHHHh-------hccccceeeeecc-chHHHHHHHHHHh
Confidence 66554332 2245789999999 8999999877654
|
| >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Probab=99.45 E-value=1.9e-13 Score=125.05 Aligned_cols=124 Identities=22% Similarity=0.333 Sum_probs=100.5
Q ss_pred cccCCCCeeeEEeeeecccCCCCCCceeEEEEEecCCCCccCCCCeeEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCC
Q 005109 308 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 387 (714)
Q Consensus 308 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 387 (714)
.|+.++|+.++|+.+++|+.+++...++|++|++.+..+.|+|||+++|+|+|...
T Consensus 6 ~~~~~~P~~a~V~~~~~lt~~~~~~~v~~i~~~~~~~~~~y~pGQ~v~v~~p~~~~------------------------ 61 (133)
T d2bmwa1 6 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK------------------------ 61 (133)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCT------------------------
T ss_pred ccCCCCCeEEEEEEEEEccCCCCCceEEEEEEccCCccCCccCCCEEEEEeccccc------------------------
Confidence 36678999999999999999888999999999999889999999999999997320
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHHcCCHhHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005109 388 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 467 (714)
Q Consensus 388 ~~~~~~~~~~~~p~pp~tl~~~l~~~~Dl~~~p~k~~l~~la~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 467 (714)
++
T Consensus 62 ~~------------------------------------------------------------------------------ 63 (133)
T d2bmwa1 62 NG------------------------------------------------------------------------------ 63 (133)
T ss_dssp TS------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCCCCC---CCeEEEEEEEEEe-cCCCCccccCccchhhcccCCCCCCCC
Q 005109 468 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA---PSRIHVTCALVYE-KTPTGRVHKGLCSTWMKNSLPMEKSND 543 (714)
Q Consensus 468 l~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp~~~---~~~i~ltv~~v~~-~~~~gr~~~G~~S~~L~~~~~g~~~~~ 543 (714)
....+|.|||||+|... .+.++++|+.+.. ....+..+.|+||+||+++++|+
T Consensus 64 -------------------~~~~~R~YSias~p~~~~~~~~~~~~~Vk~~~~~~~~~~~~~~G~~S~yL~~lk~GD---- 120 (133)
T d2bmwa1 64 -------------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGS---- 120 (133)
T ss_dssp -------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTC----
T ss_pred -------------------cccceeeeeecCCCcCCCCCccEEEEEEEeccccccccCCCCCcEehhhHhhCCCCC----
Confidence 01337999999999743 3478998876643 33446678899999999998877
Q ss_pred CceeeEEEecCCccC
Q 005109 544 CSWAPIFVRQSNFKL 558 (714)
Q Consensus 544 ~~~v~i~v~~~~F~l 558 (714)
.+.+.+|.|+|.|
T Consensus 121 --~v~v~GP~G~~fL 133 (133)
T d2bmwa1 121 --EVKITGPVGKEML 133 (133)
T ss_dssp --EEEEEEEECSSSC
T ss_pred --EEEEeCCccceeC
Confidence 5789999999875
|
| >d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Flavodoxin FldA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.38 E-value=1.3e-12 Score=126.05 Aligned_cols=120 Identities=16% Similarity=0.077 Sum_probs=98.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccchHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHH
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~ 183 (714)
|++|+|+|.|+||||+++|+.|++.+.+.. ...+++.++++... +++.+++.+||++||| .|.++..++.|+
T Consensus 1 M~kilivy~S~~G~T~~~A~~ia~g~~~~~-g~~v~~~~~~~~~~------~dl~~~d~iiiGsPty-~g~~~~~~~~fl 72 (184)
T d2arka1 1 MGKVLVIYDTRTGNTKKMAELVAEGARSLE-GTEVRLKHVDEATK------EDVLWADGLAVGSPTN-MGLVSWKMKRFF 72 (184)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTST-TEEEEEEETTTCCH------HHHHHCSEEEEEEECB-TTBCCHHHHHHH
T ss_pred CCeEEEEEECCCcHHHHHHHHHHHhhhhcc-CceEEEeecccccc------cchhhCcEEEEecCcc-ccccCHHHHHHH
Confidence 678999999999999999999999998632 26788889988775 4578899999999999 999999999999
Q ss_pred HHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 184 KWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 184 ~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
+.+.... ...++|+.+++||.+.....-...+...+...|..+|+..+
T Consensus 73 d~~~~~~-~~~l~gK~~a~f~s~g~~~gG~e~al~~~~~~l~~~G~~vv 120 (184)
T d2arka1 73 DDVLGDL-WGEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVF 120 (184)
T ss_dssp HHTGGGT-TTSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHH-HHHhCCeEEEEEEccCCCCccHHHHHHHhhhHhhhCCCEEe
Confidence 9986221 13589999999997655544344467889999999999865
|
| >d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Trp repressor binding protein WrbA species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.01 E-value=7.7e-10 Score=107.61 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=89.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccc-------------------hHHHHhhcCCCeEE
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-------------------DEYEEKLKKENIVF 164 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-------------------~~~~~~l~~~~~vi 164 (714)
.+||+|+|+|+||||+.+|+.+++.+++.| ..++++++.++.+.. ....+++.+++.+|
T Consensus 2 ~mkilivy~S~~GnT~~la~~ia~g~~~~G--~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~aD~ii 79 (201)
T d1ydga_ 2 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAG--AEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIV 79 (201)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEE
T ss_pred CcEEEEEEeCCCcHHHHHHHHHHHHHHhcC--CEEEEEEccccCccchhhhhhHhhcCCCcccCchhhhhhhHhhCCEeE
Confidence 478999999999999999999999999876 678888887643211 11246788999999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCc
Q 005109 165 FFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAK 230 (714)
Q Consensus 165 f~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~ 230 (714)
|++||| .|.++..++.|++++........+.++..++|+.+-+...-.-.+...+...+...|..
T Consensus 80 ~gsPvy-~~~~s~~~k~flDr~~~~~~~~~l~gK~~~~~~s~g~~~gg~e~~~~~~~~~~~~~g~~ 144 (201)
T d1ydga_ 80 FSSPTR-FGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAV 144 (201)
T ss_dssp EEEEEE-TTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCE
T ss_pred Eeccee-eeeccchhHHHHHHhhhHHhccccCCceeeeeeccccCCCchHHHHHhHHHHHHHcCCc
Confidence 999999 99999999999998751111345889999999876554422222333344444444433
|
| >d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Trp repressor binding protein WrbA species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.92 E-value=2.1e-09 Score=103.61 Aligned_cols=125 Identities=14% Similarity=-0.020 Sum_probs=93.9
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc-------------chHHHHhhcCCCeEEEEEeCCC
Q 005109 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-------------EDEYEEKLKKENIVFFFLATYG 171 (714)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-------------~~~~~~~l~~~~~vif~~sTyG 171 (714)
.||+|+|+|++|||+.+|+.+++.+++.| ..++++++.++... .....+++.+++.+||++|||
T Consensus 2 ~Kvliiy~S~~GnT~~la~~i~~g~~~~g--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ii~gsP~y- 78 (196)
T d2a5la1 2 PYILVLYYSRHGATAEMARQIARGVEQGG--FEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR- 78 (196)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECB-
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcC--CEEEEEeccccchHHHHhccccccccccccchhhhhhcCEEEEecchh-
Confidence 58999999999999999999999999876 66788888664321 111246788999999999999
Q ss_pred CCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 172 DGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
.|.+|..++.|++++........+.++..+.+..+-........+...+...+...|...+
T Consensus 79 ~~~~~~~~k~flDr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v 139 (196)
T d2a5la1 79 FGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 139 (196)
T ss_dssp TTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred hccccHHHHHHHHHhhhHhhcCCccCceeEEeecccccCCchHHHHHHHHHHHhhhceeee
Confidence 9999999999999875111112356777777776666666666667777777777766644
|
| >d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Hypothetical protein SP1951 domain: Hypothetical protein SP1951 species: (Streptococcus pneumoniae) [TaxId: 1313]
Probab=98.27 E-value=3.6e-06 Score=82.96 Aligned_cols=130 Identities=12% Similarity=0.122 Sum_probs=97.1
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCcccccc----------------------chHHHHhhcC
Q 005109 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------------------EDEYEEKLKK 159 (714)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------------------~~~~~~~l~~ 159 (714)
|++|+|+.||.. |+|..+|+.+.+.+.+.+ .+.+.++|+.+++.. -..+.+++.+
T Consensus 1 MkkI~ii~gS~r~~s~t~~l~~~~~~~l~~~~-~~e~~~~~l~~~~i~~~~~~~~~c~~~~~~~~~~~d~~~~i~~~i~~ 79 (232)
T d1sqsa_ 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRN-NVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLE 79 (232)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHS-CCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHhcC-CeEEEEEeccccccchhhhHHHHhhhcccccccchHHHHHHHHHHHh
Confidence 689999999975 999999999999998775 345777777654421 1124456788
Q ss_pred CCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCcccccccc
Q 005109 160 ENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 237 (714)
Q Consensus 160 ~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~~g~ 237 (714)
.+.+||++|+| .|..|..++.|++++........|.|++.+++..+-..- ...+...+...|..+|++.+...+.
T Consensus 80 AD~iI~~sP~y-~~~~s~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~g--~~~~~~~l~~~l~~~G~~~v~~~~~ 154 (232)
T d1sqsa_ 80 SDIIIISSPVY-LQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESNG--SDNVSEYLRDIFSYMGGQILHQVSI 154 (232)
T ss_dssp CSEEEEEEEEC-SSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSCC--SCCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEEEeccc-cCcchHHHHHHHHHhHhhhccccccCCeEEEEEEccCCc--HHHHHHHHHHHHHHCCCEEeceeEE
Confidence 99999999999 999999999999999722223458999999886532221 1125567888899999998865554
|
| >d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Azobenzene reductase species: Bacillus subtilis [TaxId: 1423]
Probab=98.23 E-value=4.7e-06 Score=77.90 Aligned_cols=144 Identities=10% Similarity=0.158 Sum_probs=97.0
Q ss_pred ceEEEEEeC--CCchHHHHHHHHHHHHHhhcCCCeeEEecCccccc-----c--------chHHHHhhcCCCeEEEEEeC
Q 005109 105 QKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----E--------EDEYEEKLKKENIVFFFLAT 169 (714)
Q Consensus 105 ~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----~--------~~~~~~~l~~~~~vif~~sT 169 (714)
+||++++|| ..|+|+.+++.+.+.+. ++++|+.+++. + -.++.+++...+.+||++|+
T Consensus 1 MKIl~I~GS~r~~s~t~~l~~~~~~~~~-------~~~idl~~~~lp~~~~~~~~~~~~~~~~l~~~i~~aD~vIi~sP~ 73 (171)
T d1nni1_ 1 MNMLVINGTPRKHGRTRIAASYIAALYH-------TDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPE 73 (171)
T ss_dssp CCEEEEECCCCTTCHHHHHHHHHHHHHT-------CEEEETTTSCCCCCCCCHHHHTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred CEEEEEECCCCCcChHHHHHHHHHhhCC-------ceEEEcccCCCCCccccccccccHHHHHHHHHhhccCceEEechH
Confidence 579999999 78999999998887663 35667665432 1 01134567889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccccc-----ccccc-CCCC
Q 005109 170 YGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP-----VGLGD-DDQC 243 (714)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~~~-----~g~gD-~~~~ 243 (714)
| +|.+|..++.|++|+. ...+.++.+++++.+-.....+ .+...+...|..+|+..+.. ....| ++..
T Consensus 74 Y-~~~~~~~lKn~iD~~~----~~~~~~K~~~~~~~s~g~~gg~-~~~~~l~~~l~~l~~~v~~~~~~~~~~~~~~~~~~ 147 (171)
T d1nni1_ 74 Y-HSGMSGALKNALDFLS----SEQFKYKPVALLAVAGGGKGGI-NALNNMRTVMRGVYANVIPKQLVLDPVHIDVENAT 147 (171)
T ss_dssp B-TTBCCHHHHHHHHHCC----HHHHTTCEEEEEEECCSTTTTH-HHHHHHHHHHHHTTCEECSCCEEECGGGEEGGGTE
T ss_pred H-hcccchhHhHHHHHhc----ccccCCCeEEEEEEeeCccchH-HHHHHHHHHHHHCCCEEECCeEEeccceeccCCCc
Confidence 9 9999999999999985 3458899999987643332222 24456677888889874321 11111 1223
Q ss_pred chhhHHHHHHHHHHHHHh
Q 005109 244 IEDDFSAWRELVWPELDN 261 (714)
Q Consensus 244 ~e~~f~~W~~~l~~~L~~ 261 (714)
..+++.+..+.+...|.+
T Consensus 148 ~~e~~~~~l~~~~~~l~~ 165 (171)
T d1nni1_ 148 VAENIKESIKELVEELSM 165 (171)
T ss_dssp ECHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 445566666666665554
|
| >d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Hypothetical protein Ylr011wp species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=7.2e-06 Score=77.81 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=91.0
Q ss_pred ceEEEEEeCC--CchHHHHHHHHHHHHHhhc----CCCeeEEecCcccccc-----------------------chHHHH
Q 005109 105 QKVTIFFGTQ--TGTAEGFAKALADEARARY----DKAIFKVVDIDDYADE-----------------------EDEYEE 155 (714)
Q Consensus 105 ~~v~I~YgSq--tGtae~~A~~la~~l~~~~----~~~~v~v~dl~~~~~~-----------------------~~~~~~ 155 (714)
|||+|++||. .|++..+|+.+.+.+++.. ....++++|+.+++.. -..+.+
T Consensus 1 MKIlvI~GS~R~~s~~~~la~~~~~~l~~~~~~~~~g~~v~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T d1t0ia_ 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (185)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHHHHhhhhcCCCcEEEEEeccccCccccchhhhccccccccccccCCHHHHHHHH
Confidence 6899999995 6899999999999998642 2356888887654320 011235
Q ss_pred hhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 156 ~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
.+...+.+||++|.| +|.+|.-.+.|++|+. ..+.++++++++.|.+. .. .+...+...|..+|+..+
T Consensus 81 ~i~~AD~iIi~tP~Y-~~~~~~~lK~~iD~~~-----~~~~gKpv~ivs~g~~g--g~-~a~~~L~~~l~~~g~~vv 148 (185)
T d1t0ia_ 81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLY-----HEWHGKPALVVSYGGHG--GS-KCNDQLQEVLHGLKMNVI 148 (185)
T ss_dssp HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCS-----TTTTTCEEEEEEEETTT--TH-HHHHHHHHHHHHTTCEEE
T ss_pred HHHhCCCeEEEEeee-cCCCcHHHHHHHHHhh-----HHHCCCEEEEEEEcCcc--hH-HHHHHHHHHHHHCCCEEc
Confidence 678899999999999 9999999999999984 34889999999877543 11 244568888889999865
|
| >d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Putative arsenical resistance protein species: Shigella flexneri [TaxId: 623]
Probab=98.19 E-value=9.6e-06 Score=79.79 Aligned_cols=127 Identities=12% Similarity=0.036 Sum_probs=96.2
Q ss_pred ccCCceEEEEEeC--CCchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc----------chHHHHhhcCCCeEEEEEe
Q 005109 101 DDGKQKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------EDEYEEKLKKENIVFFFLA 168 (714)
Q Consensus 101 ~~~~~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------~~~~~~~l~~~~~vif~~s 168 (714)
++...||+|++|| ..++++.+|+.+.+.+++.| ..++++|+.++... ..++.+.+...+.+||++|
T Consensus 31 ~~~~~KIl~I~GS~R~~s~s~~la~~~~~~l~~~G--~ev~~idL~dlpl~~~~~~~~~~~v~~l~~~l~~AD~vIi~tP 108 (233)
T d2fzva1 31 DAPPVRILLLYGSLRARSFSRLAVEEAARLLQFFG--AETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSP 108 (233)
T ss_dssp CCSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTT--CEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHHHHhhhcC--eEEEEEccCCCCCCCcccccCCHHHHHHHHHHhhcCeeEEEcc
Confidence 4557899999999 46789999999999998776 67889999876531 1234456778899999999
Q ss_pred CCCCCCCCchHHHHHHHHH-hccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 169 TYGDGEPTDNAARFYKWFT-EKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 169 TyG~G~~pdna~~F~~~L~-~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
+| +|.+|.-++.|++|+. .......+.++.+++++.+... ..+. +...+...|..+|+..+
T Consensus 109 ~Y-~~~~~~~lKn~iD~~~~~~~~~~~~~gK~~~ii~~sgg~-gg~~-a~~~Lr~~l~~lg~~vv 170 (233)
T d2fzva1 109 ER-HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSFN-AVNTLRLLGRWMRMFTI 170 (233)
T ss_dssp EE-TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCCH-HHHHHHHHHHHTTCEEC
T ss_pred cc-ccCcHHHHHhhHHhcccccccchhccCceeEeeeeccCc-chHH-HHHHHHHHHhhCCCEEE
Confidence 99 9999999999999996 2122345789999999776553 2223 23456778888888744
|
| >d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Hypothetical protein YwqN domain: Hypothetical protein YwqN species: Bacillus subtilis [TaxId: 1423]
Probab=97.96 E-value=1.2e-05 Score=75.07 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=83.1
Q ss_pred eEEEEEeC--CCchHHHHHHHHHHHHHhhcCCCeeEEecCccccc------------------cchHHHHhhcCCCeEEE
Q 005109 106 KVTIFFGT--QTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------------EEDEYEEKLKKENIVFF 165 (714)
Q Consensus 106 ~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------------~~~~~~~~l~~~~~vif 165 (714)
||+|++|| ..|||+.+|+.+.+.+ .++.+++.+++. +..++.+++...+.+||
T Consensus 1 KIlii~gSpr~~gnt~~l~~~~~~g~-------e~e~i~l~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD~ii~ 73 (179)
T d1rlia_ 1 KIAVINGGTRSGGNTDVLAEKAVQGF-------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIF 73 (179)
T ss_dssp CEEEEESSCSSCCHHHHHHHHHHTTT-------CCEEEEC-----------------------CHHHHHHHHHTCSEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHcCC-------CeeEEEhhhhccCCccchhhhhcCCCCccHHHHHHHHHHHhCCeEEE
Confidence 68999999 4899999998887643 234455544432 12344577899999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHh---cc----CCCccCCceEEEEeccCCchh-HHHHHHHHHHHHHHHcCCccc
Q 005109 166 FLATYGDGEPTDNAARFYKWFTE---KE----GGEWLQKLKYGVFGLGNRQYE-HFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 166 ~~sTyG~G~~pdna~~F~~~L~~---~~----~~~~l~~~~~aVFGlGds~Y~-~f~~~~k~ld~~L~~lGa~~~ 232 (714)
++|+| .|.+|..++.|++++.. .. ....+++++++++..|...+. .+-.+...+...|.-+|.+.+
T Consensus 74 ~sP~y-~~~~~a~lK~~iDr~~~~~~~~~~~~~~~~~~~K~~~~i~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~ 147 (179)
T d1rlia_ 74 ATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFK 147 (179)
T ss_dssp EEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEE
T ss_pred eeccc-CCCccHHHHHHHHHHHHhccccccCCcccccCCCEEEEEEecCCCCcchHHHHHHHHHHHHhhcCCEEc
Confidence 99999 99999999999998751 10 012467888888877765543 334455667778877888744
|
| >d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Hypothetical protein PA1204 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.88 E-value=5.7e-05 Score=70.66 Aligned_cols=122 Identities=10% Similarity=0.101 Sum_probs=89.6
Q ss_pred ceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc------------chHHHHhhcCCCeEEEEEeCC
Q 005109 105 QKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE------------EDEYEEKLKKENIVFFFLATY 170 (714)
Q Consensus 105 ~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~------------~~~~~~~l~~~~~vif~~sTy 170 (714)
+||+++.||. .++++.+|+.+.+.+.+ + ..++++|+.+...- -.++.+.+...+.+||++|.|
T Consensus 1 MKIl~i~GS~r~~s~s~~l~~~~~~~~~~-~--~ev~~idl~dlP~~~~d~~~~~~~~~~~~~~~~i~~aD~iii~sP~y 77 (174)
T d1rtta_ 1 IKVLGISGSLRSGSYNSAALQEAIGLVPP-G--MSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEY 77 (174)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCT-T--CEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEE
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhcCC-C--CEEEEEecccCCCccccccccCCCHHHHHHHHHhhcCCeEEEEccch
Confidence 5799999994 56688888888766542 3 66888888775311 112345667789999999999
Q ss_pred CCCCCCchHHHHHHHHHhccCCCccCCceEEEEeccCCchhHHHHHHHHHHHHHHHcCCccc
Q 005109 171 GDGEPTDNAARFYKWFTEKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 232 (714)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~~ 232 (714)
+|..|.-.+.|++|+... ....+.++.+++++.+-..+...+ +...+...|..+|+..+
T Consensus 78 -~~s~~~~lKn~iD~l~~~-~~~~~~gK~~~~i~~sgG~~~~~~-~~~~l~~~l~~~g~~~i 136 (174)
T d1rtta_ 78 -NYSMAGVLKNAIDWASRP-PEQPFSGKPAAILGASAGRFGTAR-AQYHLRQTLVFLDVHPL 136 (174)
T ss_dssp -TTEECHHHHHHHHHHTCS-SSCTTTTCEEEEEEECSSTTTTHH-HHHHHHHHHHHHTCEEC
T ss_pred -hccccHHHHHHHHHHhcc-cccccCCCEEEEEEECCCccchHH-HHHHHHHHHHHCCCEEc
Confidence 999999999999999621 235689999999987554443333 45567778888899865
|
| >d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Quinone reductase domain: Quinone reductase type 2 (menadione reductase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=9.6e-05 Score=71.95 Aligned_cols=157 Identities=16% Similarity=0.071 Sum_probs=103.1
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCCeeEEecCcccccc--------------------------------
Q 005109 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE-------------------------------- 149 (714)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-------------------------------- 149 (714)
.|||+|+|||-. +.|..+++.+.+++++.| ..++++||.+...+
T Consensus 2 ~mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g--~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (230)
T d2qwxa1 2 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQG--CTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRS 79 (230)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCC--CEEEEEEccccCCcccchHHHhhhccCchhhhcchhhhhhhhhccc
Confidence 589999999944 678999999999999887 56889998543321
Q ss_pred ----chHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHh---------ccCCCccCCceEEEE-eccCCc--hh--
Q 005109 150 ----EDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE---------KEGGEWLQKLKYGVF-GLGNRQ--YE-- 211 (714)
Q Consensus 150 ----~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~---------~~~~~~l~~~~~aVF-GlGds~--Y~-- 211 (714)
-..+.+.+...+.+||++|.| .+.+|.-++.|++++.. ......++++++.+. ..|... |.
T Consensus 80 ~~~di~~~~~~l~~AD~iv~~~P~y-~~~~pa~lK~~iDrV~~~g~af~~~~~~~~g~l~~kk~~~i~t~g~~~~~~~~~ 158 (230)
T d2qwxa1 80 LASDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKT 158 (230)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTGGGSTT
T ss_pred ccHHHHHHHHHHHhCCEEEEEeCcc-cccCCHHHHHHHHHhcccCcccccCCCCCcccccCCeEEEEeccCCchhhcccc
Confidence 012335678899999999999 99999999999999641 011224566665554 444322 21
Q ss_pred HHHHHHHHHHH-----HHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 212 HFNKIAKVVDE-----ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 212 ~f~~~~k~ld~-----~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
.++.....+-. .+.-+|.+.+-+......+...++++..|.+++-..|..+.
T Consensus 159 g~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 215 (230)
T d2qwxa1 159 GVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIW 215 (230)
T ss_dssp STTCCHHHHHHHHHCCCCCTTTCEECCCEEECCTTTSCHHHHHHHHHHHHHHHHTGG
T ss_pred cccccHHHHHHHHHHHHHHhCCCeEcceEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12222222221 22234776655544444444567888899988888887765
|
| >d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=3.5e-06 Score=71.75 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=49.5
Q ss_pred CCCCCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceee
Q 005109 472 PSAKPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 548 (714)
Q Consensus 472 ps~~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~ 548 (714)
|.....+|||+.+-+|. ...|+|||+|+|. .+.++++|+. ...|.+|+||+++++|+ .+.
T Consensus 26 p~~~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~--~~~~~~~vk~---------~~~G~~S~~l~~lk~GD------~v~ 88 (99)
T d1fdra1 26 PVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPD--NPDLEFYLVT---------VPDGKLSPRLAALKPGD------EVQ 88 (99)
T ss_dssp CCCCCCTTCEEEEEECC---CEEEEEECCSCTT--CSSEEEEEEC---------CTTCSSHHHHHTCCTTC------EEE
T ss_pred CCCCCCCCcEEEeccCCCCCcEEEEEccCCCCC--CceeEEEEEE---------ecCcHHHHHHhhCCCCC------EEE
Confidence 44456779998654442 2469999999987 3678888763 45699999999988876 466
Q ss_pred EEEec-CCcc
Q 005109 549 IFVRQ-SNFK 557 (714)
Q Consensus 549 i~v~~-~~F~ 557 (714)
|..|. |.|.
T Consensus 89 v~gP~~g~F~ 98 (99)
T d1fdra1 89 VVSEAAGFFV 98 (99)
T ss_dssp EESSCBCCCS
T ss_pred ECcCCCCEEE
Confidence 77654 4454
|
| >d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Quinone reductase domain: NAD(P)H:quinone reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00035 Score=69.98 Aligned_cols=158 Identities=13% Similarity=0.008 Sum_probs=106.7
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCCeeEEecCcccccc--------------------------------
Q 005109 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-------------------------------- 149 (714)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-------------------------------- 149 (714)
.|||+|+|||- .+++..+++.+.+.+++.| ..|+++||-+...+
T Consensus 2 ~KKiLiI~ahP~~~S~~~aL~~~~~~~l~~~G--~eV~~~DLy~~~f~P~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T d1d4aa_ 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKG--WEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCeEEEEEcCCCCccHHHHHHHHHHHHHHHCC--CEEEEEECcccCCCCcCCHHHHhhhhcccccccchhhhhhhhcccC
Confidence 58999999995 4678999999999999876 56888888442210
Q ss_pred ----chHHHHhhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHh---------ccCCCccCCceEEE-EeccCCc--hh--
Q 005109 150 ----EDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE---------KEGGEWLQKLKYGV-FGLGNRQ--YE-- 211 (714)
Q Consensus 150 ----~~~~~~~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~---------~~~~~~l~~~~~aV-FGlGds~--Y~-- 211 (714)
-....+.+...+.+||++|.| .+.+|.-.+.|++++.. ......|++++..+ +..|... |.
T Consensus 80 ~~dDi~~~~~~l~~AD~IV~~~P~y-w~s~PA~LK~~iDRV~~~G~af~~~~~~~~g~l~gKk~~~ivTtGg~~~~y~~~ 158 (273)
T d1d4aa_ 80 LSPDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQ 158 (273)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTT
T ss_pred CcHHHHHHHHHHHhCCEEEEECChh-hcCCCHHHHHHHHHhccCCcccccCCCCCCCcccCCeEEEEEecCCChhhhccc
Confidence 112235678899999999999 89999999999998740 00112466776544 5555443 31
Q ss_pred HHHHHHH----HHHH-HHHHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhhC
Q 005109 212 HFNKIAK----VVDE-ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLR 264 (714)
Q Consensus 212 ~f~~~~k----~ld~-~L~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~ 264 (714)
.++...+ .+.+ .|.-.|.+-+-+....+.+...++...+|.+++-+.|..+..
T Consensus 159 g~~~~~~~~l~~~~~~i~~f~G~~~l~~~~~~~~~~~~~~~r~~~le~~~~~l~~L~~ 216 (273)
T d1d4aa_ 159 GIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWD 216 (273)
T ss_dssp BTTCCHHHHHHHHHTTTTGGGTCEECCCEEETTGGGSCHHHHHHHHHHHHHHHTTGGG
T ss_pred cccCCHHHHHHHHHHHHHHhcCCeecceEEEecCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1222222 2222 233458887766666555556788899999888888887764
|
| >d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Quinone reductase domain: ACP phosphodiesterase AcpD species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.00037 Score=66.21 Aligned_cols=156 Identities=10% Similarity=0.079 Sum_probs=107.3
Q ss_pred eEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCCeeEEecCcccccc---------------------------chHHHH
Q 005109 106 KVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEYEE 155 (714)
Q Consensus 106 ~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~~~ 155 (714)
||+|+=||--| +|..+++.+.++++++++...|.++|+.+..+. ..++.+
T Consensus 2 KiLvi~~Spr~~~S~S~~L~~~f~e~~~~~~~~~eV~~~DL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (200)
T d2z98a1 2 KVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIA 81 (200)
T ss_dssp EEEEEECCSSGGGCHHHHHHHHHHHHHHHHSTTSEEEEEETTTTTCCCCCHHHHHHC------CCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcCCHHHHhhhcCCccccCHHHHHHHHHHHHHHH
Confidence 79999999864 789999999999999887677888888654320 012345
Q ss_pred hhcCCCeEEEEEeCCCCCCCCchHHHHHHHHHhc------c---CCCccCCceEEEEeccCCchh--HHHHHHHHHHHHH
Q 005109 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEK------E---GGEWLQKLKYGVFGLGNRQYE--HFNKIAKVVDEIL 224 (714)
Q Consensus 156 ~l~~~~~vif~~sTyG~G~~pdna~~F~~~L~~~------~---~~~~l~~~~~aVFGlGds~Y~--~f~~~~k~ld~~L 224 (714)
++...+.+||++|.| .+.+|.-.+.|++++... . ....+.+++..|+..+...|. .+..+..-+...|
T Consensus 82 ~i~~AD~iv~~sP~y-~~~~pa~lK~~IDr~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (200)
T d2z98a1 82 ELKAHDVIVIAAPMY-NFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTFL 160 (200)
T ss_dssp HHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEECCCSCEEEEEEECSSCCTTSTTCCHHHHHHHHH
T ss_pred HHHhcCcEEEEEccc-cccCCHHHHHHHHHhhcCCccccccCCCchhcccCceEEEEEecCCCccccchhhhHHHHHHHH
Confidence 677899999999999 999999999999998510 0 112356777777776655553 3445556677788
Q ss_pred HHcCCccccccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 005109 225 ANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 263 (714)
Q Consensus 225 ~~lGa~~~~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 263 (714)
.-+|++.+..... +.....++.-+++.++....+.+++
T Consensus 161 ~~~G~~~v~~i~~-~g~~~~~e~~~~~~~~A~~~~~~lv 198 (200)
T d2z98a1 161 GFIGITDVKFVFA-EGIAYGPEMAAKAQSDAKAAIDSIV 198 (200)
T ss_dssp HHTTCCCEEEEEE-CCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCeEEEEEEE-ecccCCHHHHHHHHHHHHHHHHHHh
Confidence 8889987544321 1111234556677766655555443
|
| >d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Flavohemoglobin, central domain species: Alcaligenes eutrophus [TaxId: 106590]
Probab=97.53 E-value=6.5e-06 Score=71.34 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=51.6
Q ss_pred CCChHHHHHHhcC-----CCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceee
Q 005109 475 KPPLGVFFAAIVP-----RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 548 (714)
Q Consensus 475 ~~p~~~~l~~i~p-----~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~ 548 (714)
...+||++.+.++ ...+|+|||+|+|. .+.++++|+.+ ..++...|..|+||++ +.+|+ .+.
T Consensus 34 ~~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p~--~~~~~~~v~~~----~~~~~~~G~~S~~l~~~l~~Gd------~v~ 101 (111)
T d1cqxa2 34 NFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKRE----GGGPQPPGYVSNLLHDHVNVGD------QVK 101 (111)
T ss_dssp CCCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECC----CBTTBCCCHHHHHHHHHCCTTC------EEE
T ss_pred CCCCCCEEEEEeecCCCcceeeeeccccCCcc--CCCeEEEEEEe----cCCCcccchhHHHHHhcCCCCC------EEE
Confidence 3467999865443 13479999999986 46788877533 2334456999999984 67765 577
Q ss_pred EEEecCCccC
Q 005109 549 IFVRQSNFKL 558 (714)
Q Consensus 549 i~v~~~~F~l 558 (714)
+..|.|.|.|
T Consensus 102 v~gP~G~F~L 111 (111)
T d1cqxa2 102 LAAPYGSFHI 111 (111)
T ss_dssp ECCCBCSCSC
T ss_pred EEccCeEeEC
Confidence 8888899976
|
| >d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: NAD(P)H:flavin oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=8.9e-06 Score=68.83 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=50.0
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEecC
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 554 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~~~ 554 (714)
..+|||+.+.+|....|+|||+|+|. +.+.++|+|+.. ..|..|+||.+ +.+|+ .+.|..|.|
T Consensus 30 f~~GQ~v~l~~~~~~~r~ySias~p~-~~~~l~l~ir~~---------~~g~~s~~l~~~l~~G~------~v~v~gP~G 93 (97)
T d1qfja1 30 FRAGQYLMVVMDERDKRPFSMASTPD-EKGFIELHIGAS---------EINLYAKAVMDRILKDH------QIVVDIPHG 93 (97)
T ss_dssp CCTTCEEEEESSSSCEEEEECCSCTT-STTCEEEEEC---------------CCHHHHHHHHHHS------EEEEEEEEC
T ss_pred cCCCCEEEEEEcCCCcEEEEEEEcCC-CCcEEEEEEeEc---------cCCchhHhHhhcCCCCC------EEEEeccCC
Confidence 45699998888888899999999997 457899988643 46889999976 56655 688889999
Q ss_pred CccC
Q 005109 555 NFKL 558 (714)
Q Consensus 555 ~F~l 558 (714)
.|.|
T Consensus 94 ~~~l 97 (97)
T d1qfja1 94 EAWL 97 (97)
T ss_dssp SCCC
T ss_pred ceEC
Confidence 8865
|
| >d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Azotobacter vinelandii [TaxId: 354]
Probab=97.42 E-value=2.5e-05 Score=66.32 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=45.6
Q ss_pred CCChHHHHHHhcCCC---cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEE-
Q 005109 475 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 550 (714)
Q Consensus 475 ~~p~~~~l~~i~p~l---~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~- 550 (714)
...+|||+.+-+|.. ..|+|||+|+|. .+.+.++++ +...|.+|+||+++.+|+ .+.|.
T Consensus 30 ~f~aGQ~~~l~~~~~g~~~~R~ySi~S~p~--~~~~~~~i~---------~~~~G~~S~~L~~l~~Gd------~v~v~~ 92 (99)
T d1a8pa1 30 RFENGQFVMIGLEVDGRPLMRAYSIASPNY--EEHLEFFSI---------KVQNGPLTSRLQHLKEGD------ELMVSR 92 (99)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSEEEEEEE---------CCSSCSSHHHHTTCCTTC------EEEEES
T ss_pred ccCCCcEEEEeccCCCceeEeeccccCCCC--CCcEEEEEE---------EeCCCChhHHHHhCCCCC------EEEECC
Confidence 445799987654432 349999999996 367777664 235699999999988876 35554
Q ss_pred EecCCc
Q 005109 551 VRQSNF 556 (714)
Q Consensus 551 v~~~~F 556 (714)
.|.|.|
T Consensus 93 gP~G~l 98 (99)
T d1a8pa1 93 KPTGTL 98 (99)
T ss_dssp CCBCSC
T ss_pred CCceeE
Confidence 456655
|
| >d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Nitrate reductase core domain species: Corn (Zea mays) [TaxId: 4577]
Probab=97.26 E-value=3.2e-05 Score=67.06 Aligned_cols=78 Identities=10% Similarity=0.114 Sum_probs=55.8
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEE
Q 005109 475 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 551 (714)
Q Consensus 475 ~~p~~~~l~~i~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v 551 (714)
..++||++.+..|. ..+|+||++|+|. .++.++|+|+.............|..|.||.++.+|+ .+.|..
T Consensus 32 ~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~-~~~~~~~~ik~~~~~~~~~~~~gG~~s~~l~~l~~Gd------~v~i~g 104 (114)
T d2cnda1 32 GLPIGKHIFVCATIEGKLCMRAYTPTSMVD-EIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGS------YIDVKG 104 (114)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCTTC------EEEEEE
T ss_pred CccceEEEEEEeecccceEEeeeccCCCCC-CCCEEEEEEEeccCCCccccccCchhHHHHhhCCCCC------EEEEEC
Confidence 34678888653332 2379999999997 4578998887532222223345699999999988876 578889
Q ss_pred ecCCccCC
Q 005109 552 RQSNFKLP 559 (714)
Q Consensus 552 ~~~~F~lp 559 (714)
|.|.|...
T Consensus 105 P~G~F~y~ 112 (114)
T d2cnda1 105 PLGHVEYT 112 (114)
T ss_dssp EECSEECC
T ss_pred CceeeEEC
Confidence 99999864
|
| >d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Probab=97.21 E-value=8.7e-05 Score=62.68 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=49.8
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|. -..|+|||+|+|. ++.++++|+ +...|.+|+||++ +.+|+ .+.+..|
T Consensus 33 ~f~pGQ~v~l~i~g~~~~r~ys~~~~~~--~~~~~~~i~---------~~~~G~~s~~l~~~l~~Gd------~v~v~gP 95 (100)
T d1krha1 33 HFLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVR---------NVPQGKMSEYLSVQAKAGD------KMSFTGP 95 (100)
T ss_dssp CCCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEE---------CCTTCHHHHHHHTTCCTTC------EEEEEEE
T ss_pred CCCCCEEEEEEECCcceeEEeeccCCCc--cCceEEEEE---------EeeCCchhhhhhccCCCCC------EEEEecc
Confidence 34589999766664 3579999999986 467887775 3356999999975 66655 5788889
Q ss_pred cCCcc
Q 005109 553 QSNFK 557 (714)
Q Consensus 553 ~~~F~ 557 (714)
.|+|.
T Consensus 96 ~G~Ff 100 (100)
T d1krha1 96 FGSFY 100 (100)
T ss_dssp ECSCS
T ss_pred ccccC
Confidence 99884
|
| >d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Flavohemoglobin, central domain species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00012 Score=62.56 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=48.9
Q ss_pred CCChHHHHHHhcCC-----CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhc-ccCCCCCCCCCceee
Q 005109 475 KPPLGVFFAAIVPR-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAP 548 (714)
Q Consensus 475 ~~p~~~~l~~i~p~-----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~-~~~~g~~~~~~~~v~ 548 (714)
...+|||+.+.++. ...|+|||||.|. .+.++|+|+ +...|..|+||+ ++++|+ .+.
T Consensus 36 ~~~pGQ~v~l~~~~~~~~~~~~r~~s~ss~~~--~~~~~i~vk---------~~~~G~~S~~l~~~l~~Gd------~v~ 98 (107)
T d1gvha2 36 EYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVK---------REEGGQVSNWLHNHANVGD------VVK 98 (107)
T ss_dssp CCCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEE---------CCTTCHHHHHHHHTCCTTC------EEE
T ss_pred CCCCCCEEEEEeeccccCceEEeeccccCCCC--CCceEEEEE---------EcCCcchhHHHHhcCCCCC------EEE
Confidence 34579998654442 2469999999886 467888876 346789999997 577766 578
Q ss_pred EEEecCCcc
Q 005109 549 IFVRQSNFK 557 (714)
Q Consensus 549 i~v~~~~F~ 557 (714)
+..|.|.|.
T Consensus 99 v~gP~G~Ff 107 (107)
T d1gvha2 99 LVAPAGDFF 107 (107)
T ss_dssp EEEEECSCC
T ss_pred EeCccccCC
Confidence 888999884
|
| >d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Phthalate dioxygenase reductase species: Pseudomonas cepacia, db01 [TaxId: 292]
Probab=97.06 E-value=9.5e-05 Score=63.04 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=41.7
Q ss_pred CChHHHHHHhcCCCcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCc-cchhhc-ccCCCC
Q 005109 476 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL-CSTWMK-NSLPME 539 (714)
Q Consensus 476 ~p~~~~l~~i~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~-~S~~L~-~~~~g~ 539 (714)
..+|||+.+.+|.-..|+|||+|+|. +.+.++|+|+. ...|. +|+||+ ++.+|+
T Consensus 39 f~pGQ~v~v~~~~~~~R~YSl~s~p~-~~~~~~i~Vk~---------~~~g~~~S~~l~~~l~~Gd 94 (103)
T d2piaa1 39 FEAGANLTVAVPNGSRRTYSLCNDSQ-ERNRYVIAVKR---------DSNGRGGSISFIDDTSEGD 94 (103)
T ss_dssp CCTTCEEEEECTTSCEEEEECCSCTT-CCSEEEEEEEC---------CTTSCSHHHHHHHSCCTTC
T ss_pred CCCCceEEEEEecceeEEEEEecCCC-CCCEEEEEEEE---------ECCCccchHHHHhcCCCCC
Confidence 35799998877777789999999997 45789988863 35576 599997 566665
|
| >d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Methane monooxygenase component C, MmoC species: Methylococcus capsulatus [TaxId: 414]
Probab=96.93 E-value=0.00017 Score=62.00 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=47.0
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcc-cCCCCCCCCCceeeEEEe
Q 005109 475 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 552 (714)
Q Consensus 475 ~~p~~~~l~~i~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~-~~~g~~~~~~~~v~i~v~ 552 (714)
...+|||+.+.+|. -.+|+|||+|+|.. .+.++|+|+. ...|.+|+||++ +.+|+ .+.+..|
T Consensus 43 ~f~pGQ~v~l~~~g~~~~R~ySias~p~~-~~~~~~~i~~---------~~~G~~S~~l~~~l~~Gd------~v~i~gP 106 (109)
T d1tvca1 43 KFEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRV---------LPEGRFSDYLRNDARVGQ------VLSVKGP 106 (109)
T ss_dssp SCCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECC---------CTTSSSHHHHHHHSSSSS------EEEEEEE
T ss_pred cCCCCcEEEEEECCccccccceeccCCcC-CceeEEEEEE---------eCCchHHHHHHhhCCCCC------EEEEeCC
Confidence 34579998765554 35899999999974 4788888753 456999999965 76765 5677776
Q ss_pred cC
Q 005109 553 QS 554 (714)
Q Consensus 553 ~~ 554 (714)
.|
T Consensus 107 ~G 108 (109)
T d1tvca1 107 LG 108 (109)
T ss_dssp EC
T ss_pred cc
Confidence 54
|
| >d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Dihydroorotate dehydrogenase B, PyrK subunit species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=96.51 E-value=0.00037 Score=58.71 Aligned_cols=64 Identities=16% Similarity=0.016 Sum_probs=47.1
Q ss_pred ChHHHHHHhcCCC---cccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEec
Q 005109 477 PLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 553 (714)
Q Consensus 477 p~~~~l~~i~p~l---~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~ 553 (714)
-+|||+.+.+|.- ..|+|||+|++. ..+.+++.+++ ...|..|.||.++.+|+ .+.|.+|.
T Consensus 34 ~pGQfv~l~~~~~~~~~~R~~Si~~~~~-~~~~i~~~i~~---------~~~g~~t~~l~~l~~Gd------~v~v~GP~ 97 (101)
T d1ep3b1 34 LPGQFLHLAVPNGAMLLRRPISISSWDK-RAKTCTILYRI---------GDETTGTYKLSKLESGA------KVDVMGPL 97 (101)
T ss_dssp STTCEEEECCSCTTCCSCEEEECCEEET-TTTEEEEEEEC---------CCTTSHHHHHHTCCTTC------EEEEEEEE
T ss_pred CCCceEEEEccCCccEeeccceeeeCCC-CCcEEEEEEee---------cCcchhhHHHHhCCCCC------EEEEeccc
Confidence 4589986655532 469999999886 45788887653 24578899999998876 57788887
Q ss_pred CCc
Q 005109 554 SNF 556 (714)
Q Consensus 554 ~~F 556 (714)
|++
T Consensus 98 G~~ 100 (101)
T d1ep3b1 98 GNG 100 (101)
T ss_dssp SBC
T ss_pred CCC
Confidence 753
|
| >d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: cytochrome b5 reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.0028 Score=55.12 Aligned_cols=61 Identities=11% Similarity=0.026 Sum_probs=43.6
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEecCCCCccccCccchhhcccCCCCCCCCCceeeEEEecCCccC
Q 005109 491 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL 558 (714)
Q Consensus 491 pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~gr~~~G~~S~~L~~~~~g~~~~~~~~v~i~v~~~~F~l 558 (714)
.|+||++|+|. .++.++++|+.............|..|.||+++.+|+ .+.|..|.|.|..
T Consensus 61 ~R~Ys~~s~~~-~~g~~~~~vk~~~~~~~~~~~~Gg~~s~~l~~l~~GD------~v~v~gP~G~F~y 121 (124)
T d1umka1 61 VRPYTPISSDD-DKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGD------TIEFRGPSGLLVY 121 (124)
T ss_dssp EEEECCSSCTT-CCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTC------EEEEEEEECSEEE
T ss_pred EEeeccCCccc-CCceEEEEEEecccccccccCCCcchHHHHhcCCCCC------EEEEECCeeeeEE
Confidence 59999999987 4588998886432111111234578889999988876 5788889999864
|
| >d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II species: Desulfovibrio africanus [TaxId: 873]
Probab=80.72 E-value=2 Score=37.91 Aligned_cols=103 Identities=20% Similarity=0.372 Sum_probs=57.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCCeeEEecCccccccc-hHHHHhhcC-CCeEEEE--EeCCC-CCCCCch
Q 005109 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-DEYEEKLKK-ENIVFFF--LATYG-DGEPTDN 178 (714)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-~~~~~~l~~-~~~vif~--~sTyG-~G~~pdn 178 (714)
..-+.|.|||++|++++.|+.|. ++| ..+.++++-.+.+=+ ..+...+.+ .+.++++ ..++| .|.| =
T Consensus 11 Ad~viV~~Gs~~~~a~~A~~~L~----~~G--i~vgvi~~r~lrPf~~~~l~~~l~k~~k~V~Vle~~~~~G~~g~~--L 82 (157)
T d2c42a3 11 AERVIVSMGSSCETIEEVINHLA----AKG--EKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDP--L 82 (157)
T ss_dssp CSEEEEECSTHHHHHHHHHHHHH----TTT--CCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCH--H
T ss_pred CCEEEEEeCHhHHHHHHHHHHHH----hhc--ccccEEEeEEEEeCCHHHHHHHHhccCCEEEEEeCCcCCCCCchH--H
Confidence 35688999999999999886654 444 456777776654433 234455644 4555444 33443 3443 2
Q ss_pred HHHHHHHHHhccCCCccCCceEEEEeccCCch--hHHHHH
Q 005109 179 AARFYKWFTEKEGGEWLQKLKYGVFGLGNRQY--EHFNKI 216 (714)
Q Consensus 179 a~~F~~~L~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~ 216 (714)
..+...-|... ......+.=.++|||.+.. +++..+
T Consensus 83 ~~dv~saL~~~--~~~~~~v~~~~~GlggrD~~~~~~~~i 120 (157)
T d2c42a3 83 YLDVCSAFVER--GEAMPKILAGRYGLGSKEFSPAMVKSV 120 (157)
T ss_dssp HHHHHHHHHHH--CSCCCEEEEEECCGGGCCCCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCceEeeEecccCCCCCCHHHHHHH
Confidence 23333333311 1112233445789998875 454444
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