Citrus Sinensis ID: 005127
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WLC6 | 1089 | Pentatricopeptide repeat- | yes | no | 0.990 | 0.648 | 0.676 | 0.0 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.591 | 0.533 | 0.260 | 9e-36 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.597 | 0.464 | 0.273 | 2e-35 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.559 | 0.436 | 0.279 | 3e-35 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.633 | 0.750 | 0.258 | 5e-35 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.586 | 0.659 | 0.248 | 1e-34 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.586 | 0.747 | 0.248 | 2e-34 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.556 | 0.630 | 0.259 | 2e-34 | |
| Q9ZQF1 | 627 | Pentatricopeptide repeat- | no | no | 0.635 | 0.722 | 0.237 | 4e-34 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.601 | 0.574 | 0.258 | 5e-34 |
| >sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830, chloroplastic OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1021 bits (2641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/711 (67%), Positives = 586/711 (82%), Gaps = 5/711 (0%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 665
AGAK+P++N+++ +++ +I + GEKTID+ R Q I ALLRRL +PY S ++RI
Sbjct: 981 AGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRI 1038
Query: 666 NGLALKRWFQPKLASPFS-GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 713
NG++LK WFQPKL SPFS GKPG+L S Q LG I+ QQR+IR GNLSLE
Sbjct: 1039 NGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1089
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 113/434 (26%), Positives = 203/434 (46%), Gaps = 12/434 (2%)
Query: 28 QLHSYNRLIR----QGRISECIDLLEDM--ERKGLLDMDKVYHAR----FFNVCKSQKAI 77
+ SYN L++ + R E ++LL M +R G D V + FF S KA
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216
Query: 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
P + T+N +++ ++ + A +VL + + G+ DC Y +++
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276
Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
SG+ +M + G+EP+V TY L+D K G+ +A + M + +KP+
Sbjct: 277 CSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEI 336
Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
+ L+ GA+ +L M + + PDH L+ A A G+VD+A V+
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPDHYVFSILICAYAKQGKVDQAMLVF 394
Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
+ + + Y I ++G E A ++ M +G+ P + ++LI
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 454
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
K E A E++ E ++GI + I ++S++ + ++ +L+E M I +KP V T
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514
Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
N LI C ++ + M++LS M S+GL PNT+TYS L+ + +E L+L + +
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Query: 438 DGVIPNLVMFKCII 451
GV P+++ + I+
Sbjct: 575 SGVSPDIITYNIIL 588
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 207/461 (44%), Gaps = 35/461 (7%)
Query: 16 GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
G + N + S + +Y R G E I + M+ GL Y+A K
Sbjct: 262 GGYGNTVYAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGM 318
Query: 76 AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
K+ +FF + P TFN L++VC+ E A + + ++ D Y
Sbjct: 319 EFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
TL+ K G++D FE+ +M I PNV +Y +IDG AKAG+ +A +G MR
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
+ DRV +N L++ + G + A D+L EM A V + D +T AL+ G+ D
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASVG-IKKDVVTYNALLGGYGKQGKYD 496
Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
++V+ + + ++ Y+ I+ S+ G ++ A ++ + G+ D V SALI
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556
Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-------------- 357
D G V +A ++ E +GIS +++Y+S++ A + +
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSS 616
Query: 358 ----ALELYEHMKSIKLKPTVST-MNALITALCDG--DQLPKTMEVLSDMKSLGLCPNTI 410
AL E + I+L ++T N T C+ +L +EV M L + PN +
Sbjct: 617 SALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVV 676
Query: 411 TYSILLVACERKDDVEVGLMLLSQ-----AKEDGVIPNLVM 446
T+S +L AC R + E MLL + K GV+ L+M
Sbjct: 677 TFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 202/411 (49%), Gaps = 12/411 (2%)
Query: 47 LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SV 101
+ +M KG + Y +C +++ I EA F + + PT+ T+ +L+ S+
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
C S + SE A +++ ++E G+K + YT LI + K + E+ +M+ G+ PN
Sbjct: 334 CGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392
Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
V TY ALI+G K G + A +M S+ + P+ +N LI +S V +A VL
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLN 451
Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
+M V PD +T +L+ +G D A + +++ + YT I+ +
Sbjct: 452 KMLE--RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509
Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
+ E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ ++ ++
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLT 569
Query: 342 YSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
+++L+ G C++ K ++A L E M I L+PTVST LI L M
Sbjct: 570 FNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628
Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
S G P+ TY+ + R+ + ++++ +E+GV P+L + +I
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 121/468 (25%), Positives = 221/468 (47%), Gaps = 16/468 (3%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
++ L ++R R G E + LLE M RKG + D + + + + I +A R +
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKG-YNPDVILCTKLIKGFFTLRNIPKAVRVME 148
Query: 86 LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
++ P + +N L++ + A +VL ++ D Y +I + GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208
Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
+D +V +++++ +P V TY LI+ G V +A M S+ +KPD +N
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268
Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
+I + G VDRAF+++ N E+ +PD I+ L++A N G+ + ++ M
Sbjct: 269 IIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTKM 324
Query: 263 YNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
++ K P V Y+I I + G E A ++ M +KG+ PD LI G++
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384
Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
+ A E L+ + G I++Y++++ C N K Q ALE++ + + P S+ N
Sbjct: 385 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYNT 443
Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
+ +AL + + ++ +M S G+ P+ ITY+ ++ R+ V+ LL +
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503
Query: 440 VIPNLVMFKCI-IGMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
P++V + + +G C + R E A + E ++ N RP E +T L
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN-ETTYTVL 549
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 204/427 (47%), Gaps = 9/427 (2%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN-KASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ A +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
A + +M +DPD T +L+ ++D+A+++++ + + Y
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
I ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G+
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466
Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 467 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
++ + G+ PN +TY+ ++ K ++ LL + KEDG +PN + +I
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585
Query: 455 SRRYEKA 461
R +KA
Sbjct: 586 LRDGDKA 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 205/427 (48%), Gaps = 9/427 (2%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 95 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN-KASEAVALVDRMVQRGCQPNLVTY 153
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D + AF +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
A + +M +DPD T +L+ ++D+A+++++ + + + Y
Sbjct: 274 AEKLHDDMIKR--SIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331
Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
I ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G+
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391
Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 392 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
++ + G+ PN +TY+ ++ K ++ LL + KEDG +P+ + +I
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510
Query: 455 SRRYEKA 461
R +KA
Sbjct: 511 LRDGDKA 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 201/412 (48%), Gaps = 15/412 (3%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ AF +L +++ L+ +Y T+I K +D +F EM
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M + + PD F+ALI A + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEV--Y 272
A + EM +DP +T +L+ ++D A+++++ M+ K+ P+V Y
Sbjct: 345 AEKLYDEMVK--RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF---PDVVTY 399
Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
I + E V+ +M+++G++ + V + LI AG + A EI +E +
Sbjct: 400 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459
Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
G+ I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 460 DGVPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518
Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/472 (23%), Positives = 218/472 (46%), Gaps = 19/472 (4%)
Query: 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
F++L+ C + + A + L++E G + ++T ++ +++ + + +M
Sbjct: 158 FDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMY 217
Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
I+ NV+T+ +I+ K G++ KA G GIM +KP V +N L+ G ++
Sbjct: 218 RMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIE 277
Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
A +++EM ++ PD T ++ N G RA EV + + + + Y I
Sbjct: 278 GARLIISEMKSK--GFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSYNI 332
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
I CS GD E A + D+M K+G++P + LI K+EAA +++E + +G
Sbjct: 333 LIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKG 392
Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I + ++Y+ L+ + +KA L++ M + ++PT T +LI LC ++ +
Sbjct: 393 IVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREAD 452
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
E+ + G+ P+ + + L+ +++ LL + + P+ V + C++ G+
Sbjct: 453 ELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGL 512
Query: 454 CSR-RYEKARTL----------NEHVLSFNSGRPQIENKW-TSLALMVYREAIVAGTIPT 501
C ++E+AR L +H+ S+N+ K T A MV E + G PT
Sbjct: 513 CGEGKFEEARELMGEMKRRGIKPDHI-SYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPT 571
Query: 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 553
+ + +L L ++ E L+ + S+ CS+I+ D +
Sbjct: 572 LLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDAK 623
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 114/441 (25%), Positives = 205/441 (46%), Gaps = 12/441 (2%)
Query: 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
SY+RL I + + ++ + G + Y+A +S++ I A FK +
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 88 -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
+P + T+N+L+ + + + A + ++ G + Y TLI K K+D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
F++ M G+EPN+ +Y +I+G + G++ + M + D V +N LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G +A + AEM H + P IT +L+ + AG ++RA E + +
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
YT ++ SQ G A V +M G P V +ALI+ GK+E A +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437
Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
L++ K +G+S ++SYS+++ + + +AL + M +KP T ++LI C+
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497
Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
+ + ++ +M +GL P+ TY+ L+ A + D+E L L ++ E GV+P++V
Sbjct: 498 QRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVT 557
Query: 447 FKCIIGMC---SRRYEKARTL 464
+ +I SR E R L
Sbjct: 558 YSVLINGLNKQSRTREAKRLL 578
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | ||||||
| 255586885 | 1129 | pentatricopeptide repeat-containing prot | 0.998 | 0.630 | 0.768 | 0.0 | |
| 359474892 | 1115 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 0.634 | 0.752 | 0.0 | |
| 297744686 | 1550 | unnamed protein product [Vitis vinifera] | 0.992 | 0.456 | 0.752 | 0.0 | |
| 224080562 | 665 | predicted protein [Populus trichocarpa] | 0.929 | 0.996 | 0.771 | 0.0 | |
| 449458656 | 1108 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.639 | 0.696 | 0.0 | |
| 357473771 | 1173 | Pentatricopeptide repeat-containing prot | 0.945 | 0.574 | 0.720 | 0.0 | |
| 356529805 | 1092 | PREDICTED: pentatricopeptide repeat-cont | 0.945 | 0.617 | 0.712 | 0.0 | |
| 356544435 | 1071 | PREDICTED: pentatricopeptide repeat-cont | 0.945 | 0.629 | 0.705 | 0.0 | |
| 110740372 | 1089 | hypothetical protein [Arabidopsis thalia | 0.990 | 0.648 | 0.676 | 0.0 | |
| 145353124 | 1089 | pentatricopeptide repeat-containing prot | 0.990 | 0.648 | 0.676 | 0.0 |
| >gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1178 bits (3047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/714 (76%), Positives = 630/714 (88%), Gaps = 2/714 (0%)
Query: 1 MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
+QD N+ +FPYPNG H+ +EQ+H YNRL+R GR++EC+DLLEDMER+GLLDM
Sbjct: 415 IQDEHTNLPEFPYPNGVHSTNKDHKAEQVHGYNRLLRDGRLAECVDLLEDMERRGLLDMS 474
Query: 61 KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
K+YHA+FF +CK QKA+KEAFRF KLVPNP+LSTFNMLMSVC+SS+DS+GAF+VLRL Q
Sbjct: 475 KIYHAKFFKICKIQKAVKEAFRFCKLVPNPSLSTFNMLMSVCSSSQDSDGAFEVLRLAQG 534
Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
AGLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYG+LIDGCAKAGQ+AK
Sbjct: 535 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAK 594
Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
AFGAYGI+RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GAL
Sbjct: 595 AFGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETHPIDPDHITVGAL 654
Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
MKACA AGQVDRA+EVY M+HKYNIKGTPEVYTIA+N CSQTGDWEFA SVYDDMT+KGV
Sbjct: 655 MKACAKAGQVDRAKEVYNMLHKYNIKGTPEVYTIAVNFCSQTGDWEFARSVYDDMTRKGV 714
Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
PDE+FLSAL+D AGHAG V+ AFE LQEA+ QG +GI+ YSSLMGACSNAKNWQKALE
Sbjct: 715 APDEMFLSALVDVAGHAGLVDIAFETLQEARTQGTQLGIVPYSSLMGACSNAKNWQKALE 774
Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
LYE +K+IKLKPTVSTMNAL+TALCDGDQL K +E LS+MKS GLCPN +TYSILLVA E
Sbjct: 775 LYEDIKAIKLKPTVSTMNALMTALCDGDQLQKALETLSEMKSFGLCPNIVTYSILLVASE 834
Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 480
RKDD++ G MLLSQAKED + P +M+KCIIGMC RRY+KA +L E +LSF+SGRPQI+N
Sbjct: 835 RKDDLDAGDMLLSQAKEDCITPTFLMYKCIIGMCLRRYKKACSLGESILSFDSGRPQIKN 894
Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 540
+WTS AL VYRE I AG PT+EVVS+VLGCLQLP +A ++ RLVENLGV+AD K SNL
Sbjct: 895 EWTSRALTVYRETIAAGEKPTMEVVSQVLGCLQLPCDASLKGRLVENLGVTADPSKFSNL 954
Query: 541 CSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGL 600
C+L+DGFGEYDPRAFSLLEEAAS G VPC SFKE P+V+DA+ L+ H A+VYLLTILKGL
Sbjct: 955 CALVDGFGEYDPRAFSLLEEAASLGTVPCASFKESPIVMDAKLLQSHIAEVYLLTILKGL 1014
Query: 601 RHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSY 660
+HRLAAGAKLPN+ ILLP E TQI ++ GEKTI++A R +Q +A+LLRRLGLPYQGN SY
Sbjct: 1015 KHRLAAGAKLPNITILLPTEMTQIKTLKGEKTINLAGRISQDVASLLRRLGLPYQGNESY 1074
Query: 661 GKIRINGLALKRWFQPKLASPFSGKPGELS-SL-QLGKFITHQQRNIRTGNLSL 712
GKIRING++L+RW QPKLASPFSGKP ELS SL ++GK ITHQQRNIRTGNLSL
Sbjct: 1075 GKIRINGISLRRWLQPKLASPFSGKPEELSFSLSRIGKGITHQQRNIRTGNLSL 1128
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/710 (75%), Positives = 619/710 (87%), Gaps = 2/710 (0%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 406 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 465
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 466 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 525
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 526 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 585
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 586 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 645
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 646 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 705
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 706 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 765
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 766 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 825
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKWTS
Sbjct: 826 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 885
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE + AG IPT+E++S+VLGCLQ P + +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 886 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 945
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I A+VYLLT+LKGL+HRLA
Sbjct: 946 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLA 1005
Query: 606 AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 665
AGAKLP++ ILLP E TQ+++ GEK I++A R +QA+A++LRRLGLPYQGN S GKIRI
Sbjct: 1006 AGAKLPSMTILLPTETTQVLAPKGEKAINLAGRISQAVASMLRRLGLPYQGNESRGKIRI 1065
Query: 666 NGLALKRWFQPKLASPFSGKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 713
NGLA +RWFQPKLA PFSGK ELSS Q LG I+ QQR IRTGNLSL+
Sbjct: 1066 NGLATRRWFQPKLAGPFSGKVDELSSSQSRLGTGISLQQRKIRTGNLSLD 1115
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/710 (75%), Positives = 619/710 (87%), Gaps = 2/710 (0%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 841 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 900
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 901 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 960
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 961 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 1020
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 1021 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 1080
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 1081 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 1140
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 1141 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 1200
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 1201 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 1260
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKWTS
Sbjct: 1261 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 1320
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE + AG IPT+E++S+VLGCLQ P + +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 1321 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 1380
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I A+VYLLT+LKGL+HRLA
Sbjct: 1381 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLA 1440
Query: 606 AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 665
AGAKLP++ ILLP E TQ+++ GEK I++A R +QA+A++LRRLGLPYQGN S GKIRI
Sbjct: 1441 AGAKLPSMTILLPTETTQVLAPKGEKAINLAGRISQAVASMLRRLGLPYQGNESRGKIRI 1500
Query: 666 NGLALKRWFQPKLASPFSGKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 713
NGLA +RWFQPKLA PFSGK ELSS Q LG I+ QQR IRTGNLSL+
Sbjct: 1501 NGLATRRWFQPKLAGPFSGKVDELSSSQSRLGTGISLQQRKIRTGNLSLD 1550
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa] gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/665 (77%), Positives = 592/665 (89%), Gaps = 2/665 (0%)
Query: 51 MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110
MER+GLLDM+KVYH +FF +C+SQKA+KEAFRF KLV NPTLSTFNMLMSVCA+S++S G
Sbjct: 1 MERRGLLDMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTFNMLMSVCATSQNSAG 60
Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
AF+VL+L + GLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYGALID
Sbjct: 61 AFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALID 120
Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
GCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM E P+
Sbjct: 121 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPI 180
Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
DPDHIT+GAL+KAC NAGQVDRA+EVY M+HKYNIKGTPEVYTIAIN CSQ GDWEFAC
Sbjct: 181 DPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACK 240
Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
V+DDMT+KGV+PDE+FLSALID AGHAGK++AAFEI+QEAK +G +GII YSSLMGAC
Sbjct: 241 VFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACC 300
Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
NAKNWQK LELYE +KS+K+KPTV+TMNALITALCDGDQLPK +EVLS+MK+ GL PNTI
Sbjct: 301 NAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKAWGLRPNTI 360
Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
TYSIL VA ERKDD+E GLMLLSQAK+D V P L+M KCII MC R++E A TL E VLS
Sbjct: 361 TYSILSVASERKDDLEAGLMLLSQAKKDCVAPTLIMSKCIISMCLRKFESACTLGEAVLS 420
Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 530
FNSGR QIENKWTS+ALMVYR + AG PT+E+VS+VLGCLQ+P +A ++ RLVENLGV
Sbjct: 421 FNSGRAQIENKWTSVALMVYRGTMAAGEKPTIELVSQVLGCLQIPCDATLKNRLVENLGV 480
Query: 531 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
+A + + SNLCSL+DGFGEYDPRAFSLLEEAA+ GIVPCVSFKE P+ +DA++L+IH A+
Sbjct: 481 TAVSSRYSNLCSLVDGFGEYDPRAFSLLEEAAALGIVPCVSFKESPITMDAKQLQIHIAE 540
Query: 591 VYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRL 650
VY LTILKGL+HRLAAGAKLPNV ILLPVEK Q++++ GEKTI++A R ++A+A+LLRRL
Sbjct: 541 VYFLTILKGLKHRLAAGAKLPNVTILLPVEKAQVITLEGEKTINVAGRISRAVASLLRRL 600
Query: 651 GLPYQGNGSYGKIRINGLALKRWFQPKLASPFSGKPGELSS--LQLGKFITHQQRNIRTG 708
GLPYQGN SYGKIRING++L+RW QPKL SPFSGKPGE S+ +LGK I+ QQRNIRTG
Sbjct: 601 GLPYQGNESYGKIRINGISLRRWLQPKLDSPFSGKPGEWSTSLSRLGKGISFQQRNIRTG 660
Query: 709 NLSLE 713
+ SLE
Sbjct: 661 DFSLE 665
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1051 bits (2718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/711 (69%), Positives = 606/711 (85%), Gaps = 2/711 (0%)
Query: 5 GKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
GK + P+PNGKH +Y + +Q SYN+ ++ GR+ +CI +L+DME++G+LDM+K+YH
Sbjct: 398 GKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGILDMNKIYH 457
Query: 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
+FFN+CKS+KA++EAF++ L+ NPTLSTFNMLMSVCASS+DSE AFQV+RLVQEAG+K
Sbjct: 458 GKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMK 517
Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
ADCKLYTTLI+TC KSGKVDAMFEVFH MVNAG+EPNVHTYGALIDGCA+A QVAKAFG
Sbjct: 518 ADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGV 577
Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE+HP++PDHITIGALMKAC
Sbjct: 578 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKAC 637
Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
ANAGQVDRAREVYKMIH Y IKGTPEVYTIA+NCCSQ+ DW+FA ++Y DMT+KGV PDE
Sbjct: 638 ANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDE 697
Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
+FLSALID AGHAGK++AAFE+L EAK GI VGI+SYSSLMGACSNAKNWQKAL LYE
Sbjct: 698 IFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYED 757
Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
+KS+KL+ TVST+NALITAL DG+QL M++L++MK LGL PN ITYSIL A +R +D
Sbjct: 758 LKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKELGLSPNNITYSILTAASDRNND 817
Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 484
+E+ LMLLSQAKEDG++P L M++CIIGMC RR +L+ ++S +S PQ+++KWT+
Sbjct: 818 LEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRIADPSSLDRPLMSLDSTLPQVDSKWTA 877
Query: 485 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 544
AL VYRE I AG +P+++V+S+VLGCLQ+P++ ++ RL+EN+GVSAD+ + S+LCSLI
Sbjct: 878 QALKVYREIIEAGIVPSIDVLSQVLGCLQIPHDPALKSRLIENIGVSADSSRSSSLCSLI 937
Query: 545 DGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRL 604
DGFGEYDPRAFSL EEAAS G+ P VS K P+VVDA++L+IHTA+VYLLT+LKGL+HRL
Sbjct: 938 DGFGEYDPRAFSLFEEAASLGVAPFVSLKGNPIVVDAKELQIHTAEVYLLTVLKGLKHRL 997
Query: 605 AAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIR 664
AAG++LPN+ ILL E T+I+ GE+TI+++ R QA+AALLRRLGLPYQGN S GKIR
Sbjct: 998 AAGSRLPNIMILLSNETTEILFSKGERTINLSGRVGQAVAALLRRLGLPYQGNESSGKIR 1057
Query: 665 INGLALKRWFQPKLASPFSGKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 713
INGLAL+RW QPKL+ SGKPGE + Q L K I+HQQR+IR GNLSL+
Sbjct: 1058 INGLALRRWLQPKLSDSLSGKPGEFGTFQSRLRKGISHQQRDIRIGNLSLD 1108
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357473771|ref|XP_003607170.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355508225|gb|AES89367.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/676 (72%), Positives = 587/676 (86%), Gaps = 2/676 (0%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK QKA+ EAF + +L+PNPTLSTFNMLM
Sbjct: 498 RLCECVELLKDMEMKGLLDMTKVYHAKFFNICKKQKAVNEAFDYVRLIPNPTLSTFNMLM 557
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
SVCASS+DSEGAFQV++L+++A L DCKLYTTLI+TC K GKVD MFEVFH+MVN+G+E
Sbjct: 558 SVCASSQDSEGAFQVIQLLKDARLDPDCKLYTTLISTCGKCGKVDLMFEVFHKMVNSGVE 617
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
PNVHTYGALIDGCA+AGQVAKAFGAYGIMRSKNVK DRVVFNALI AC QSGA+ RAFDV
Sbjct: 618 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQSGAMARAFDV 677
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
+AEM AE+ P+ PDH+T G LMKACA AGQV+RAREVYKMI +YNIKG+ EVYTIAIN C
Sbjct: 678 IAEMEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSC 737
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
SQTGDWEFA SVYDDMT+KGV+PDE+F+SALID AGHA K+EAAF+ILQ+A+ +G+ +GI
Sbjct: 738 SQTGDWEFARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGVQIGI 797
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
++YSSLMGACS AKNWQ+ALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVLS+
Sbjct: 798 MTYSSLMGACSKAKNWQRALELYEYLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSE 857
Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
MK LGLCPN+IT+SIL+VA E+KDD+E MLLSQAK+DG P L+M +CIIGMC RR+E
Sbjct: 858 MKGLGLCPNSITFSILIVASEKKDDMEAAQMLLSQAKKDGAAPTLIMCRCIIGMCLRRFE 917
Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
KA + E VLSF+SGRPQ+ N+WTSLALMVYRE I AG PT +++S+VLGCL+ PY+
Sbjct: 918 KACLVGETVLSFDSGRPQVNNEWTSLALMVYRETIGAGEKPTSQILSQVLGCLKFPYDTY 977
Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
+R RLVENLGV+A++ K SNLCSLIDGFGEYDPRAFS+LEEAAS+G+VP VS K P+V+
Sbjct: 978 VRNRLVENLGVTAESSKTSNLCSLIDGFGEYDPRAFSILEEAASYGVVPSVSLKMNPIVI 1037
Query: 580 DARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERT 639
DA++L+ TA+VYLLTILKGL+HRLAAGAKLPN+ ILLPVE+T+++S GEKTI +AER
Sbjct: 1038 DAKELDAFTAEVYLLTILKGLKHRLAAGAKLPNIIILLPVEETKLLSPEGEKTIILAERG 1097
Query: 640 TQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFSGKPGELSS--LQLGKF 697
QA+AAL RRL +PYQG+ S GK+RIN L L +W+QPKLASPF G G+ SS L+LGK
Sbjct: 1098 GQAVAALFRRLHIPYQGSESNGKLRINSLGLIKWYQPKLASPFGGFQGDWSSTQLRLGKN 1157
Query: 698 ITHQQRNIRTGNLSLE 713
I++QQRNIRTGNLSL+
Sbjct: 1158 ISNQQRNIRTGNLSLD 1173
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1043 bits (2698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/685 (71%), Positives = 590/685 (86%), Gaps = 11/685 (1%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 408 RLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 467
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFEVFH+MVN+G+E
Sbjct: 468 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 527
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
PNVHTYGALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALI AC QSGA+DRAFDV
Sbjct: 528 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGALDRAFDV 587
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
LAEM AE P+DPDH+TIGAL+KAC AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 588 LAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCPEVYTIAINSC 647
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
SQTGDWEFA +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA+ GI +GI
Sbjct: 648 SQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEARKGGILIGI 707
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
+SYSSLMGACSNA+NWQKALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVL +
Sbjct: 708 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 767
Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
MK LGL PN+IT+SIL+VA E+KDD+E MLLS AK+DGV+PNL+M +CIIGMC RR+E
Sbjct: 768 MKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSLAKKDGVVPNLIMCRCIIGMCQRRFE 827
Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
KA + E VLSF+SGRPQ++NKWTSLALMVYRE I AG PT E++S++LGCLQLPY+
Sbjct: 828 KACFVGEPVLSFDSGRPQVDNKWTSLALMVYRETIEAGEKPTSEILSQILGCLQLPYDTS 887
Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
++ RLVENLGVS + + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VS K PVV+
Sbjct: 888 VKNRLVENLGVSMETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSLKVSPVVI 947
Query: 580 DARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERT 639
DA++L TA+VYL+T+LKGL+HRLAAGA+LPN+ ILLPVEKT+++S +K I++ R
Sbjct: 948 DAKELNASTAEVYLITVLKGLKHRLAAGARLPNIIILLPVEKTEVVSPKWKKNINLGGRA 1007
Query: 640 TQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASP---------FSGKPGELS 690
QA+ ALLRRL +P+QG+ S GK+RI GLALK+WFQPKLA P FSGKPG+ +
Sbjct: 1008 GQAVGALLRRLQIPHQGSESNGKLRIGGLALKKWFQPKLAYPFSVNMGSPTFSGKPGDWN 1067
Query: 691 S--LQLGKFITHQQRNIRTGNLSLE 713
S +LGK I++QQRNIRTGNLSL+
Sbjct: 1068 SSLSRLGKSISNQQRNIRTGNLSLD 1092
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544435|ref|XP_003540656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/685 (70%), Positives = 587/685 (85%), Gaps = 11/685 (1%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 387 RLHECVELLKDMETKGLLDMSKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 446
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFEVFH+MVN+G+E
Sbjct: 447 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 506
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
PNVHTYGALI GCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALI AC QSGAVDRAFDV
Sbjct: 507 PNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDV 566
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
LAEM AE P+DPDH+TIGAL+KAC AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 567 LAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEVYKMVQKYNIKGCPEVYTIAINSC 626
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
SQTGDWE+A +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA GI +GI
Sbjct: 627 SQTGDWEYARTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEAHKGGIQIGI 686
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
+SYSSLMGACSNA+NWQKALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVL +
Sbjct: 687 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 746
Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
MK LGL PN+IT+SIL+VA E+KDD+E M+LS AK+DGV PNL+M +CIIGMC RRYE
Sbjct: 747 MKGLGLSPNSITFSILIVASEKKDDMEAAQMILSLAKKDGVAPNLIMCRCIIGMCQRRYE 806
Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
KA + E VLSF+SGRP ++NKWTSLALMVYRE I AG PT E++ ++LGCLQLPY+
Sbjct: 807 KACFVGEPVLSFDSGRPLVDNKWTSLALMVYRETIEAGGKPTSEILPQILGCLQLPYDTS 866
Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
++ RLVENLGV A+ + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VSFK P+V+
Sbjct: 867 VKNRLVENLGVRAETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSFKVSPIVI 926
Query: 580 DARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERT 639
DA++L TA+VY++T+LKGL++RLAAGA+LPN+ ILLPVE+T+++S G+K I++ R
Sbjct: 927 DAKELHASTAEVYIITVLKGLKYRLAAGARLPNIIILLPVEETEVVSPKGKKIINLGGRA 986
Query: 640 TQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASP---------FSGKPGELS 690
QA+ ALLRRL +P+QG+ S GK+RI GLALK+WFQPKLASP FSGKPG+ +
Sbjct: 987 GQAVGALLRRLQIPHQGSESNGKLRIGGLALKKWFQPKLASPFSVNMGSPTFSGKPGDWN 1046
Query: 691 S--LQLGKFITHQQRNIRTGNLSLE 713
S +LGK I++QQRNIR GNLSL+
Sbjct: 1047 SSLSRLGKNISNQQRNIRIGNLSLD 1071
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/711 (67%), Positives = 586/711 (82%), Gaps = 5/711 (0%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 665
AGAK+P++N+++ +++ +I + GEKTID+ R Q I ALLRRL +PY S ++RI
Sbjct: 981 AGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRI 1038
Query: 666 NGLALKRWFQPKLASPFS-GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 713
NG++LK WFQPKL SPFS GKPG+L S Q LG I+ QQR+IR GNLSLE
Sbjct: 1039 NGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1089
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145353124|ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g34830, chloroplastic; Flags: Precursor gi|332661026|gb|AEE86426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1021 bits (2641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/711 (67%), Positives = 586/711 (82%), Gaps = 5/711 (0%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 665
AGAK+P++N+++ +++ +I + GEKTID+ R Q I ALLRRL +PY S ++RI
Sbjct: 981 AGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRI 1038
Query: 666 NGLALKRWFQPKLASPFS-GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 713
NG++LK WFQPKL SPFS GKPG+L S Q LG I+ QQR+IR GNLSLE
Sbjct: 1039 NGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1089
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | ||||||
| TAIR|locus:2116915 | 1089 | MRL1 "MATURATION OF RBCL 1" [A | 0.990 | 0.648 | 0.676 | 4.1e-262 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.661 | 0.784 | 0.261 | 3.2e-36 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.570 | 0.772 | 0.278 | 1.6e-34 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.562 | 0.438 | 0.294 | 1.6e-34 | |
| TAIR|locus:2174165 | 504 | AT5G16640 [Arabidopsis thalian | 0.513 | 0.726 | 0.280 | 2.4e-34 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.584 | 0.657 | 0.252 | 1.5e-33 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.570 | 0.646 | 0.253 | 2.5e-33 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.598 | 0.571 | 0.264 | 1.2e-32 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.639 | 0.727 | 0.244 | 1.6e-32 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.569 | 0.637 | 0.251 | 2.2e-32 |
| TAIR|locus:2116915 MRL1 "MATURATION OF RBCL 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2522 (892.8 bits), Expect = 4.1e-262, P = 4.1e-262
Identities = 481/711 (67%), Positives = 586/711 (82%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 605
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 606 AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 665
AGAK+P++N+++ +++ +I + GEKTID+ R Q I ALLRRL +PY S ++RI
Sbjct: 981 AGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRI 1038
Query: 666 NGLALKRWFQPKLASPFSG-KPGELSSLQ--LGKFITHQQRNIRTGNLSLE 713
NG++LK WFQPKL SPFSG KPG+L S Q LG I+ QQR+IR GNLSLE
Sbjct: 1039 NGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1089
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 3.2e-36, P = 3.2e-36
Identities = 130/498 (26%), Positives = 238/498 (47%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAF 81
++ L ++R R G E + LLE M RKG + D + + FF + KA++
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNIPKAVR-VM 147
Query: 82 RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
+ P + +N L++ + A +VL ++ D Y +I + G
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207
Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
K+D +V +++++ +P V TY LI+ G V +A M S+ +KPD +N
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYN 267
Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
+I + G VDRAF+++ N E+ +PD I+ L++A N G+ + ++ M
Sbjct: 268 TIIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTK 323
Query: 262 KYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
++ K P V Y+I I + G E A ++ M +KG+ PD LI G+
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383
Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
++ A E L+ + G I++Y++++ C N K Q ALE++ + + P S+ N
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYN 442
Query: 379 ALITAL-CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
+ +AL GD++ + + ++ +M S G+ P+ ITY+ ++ R+ V+ LL +
Sbjct: 443 TMFSALWSSGDKI-RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRS 501
Query: 438 DGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV----YR 491
P++V + ++ G C + R E A + E ++ N RP E +T L + YR
Sbjct: 502 CEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN-ETTYTVLIEGIGFAGYR 559
Query: 492 -EAI-VAGTIPTVEVVSK 507
EA+ +A + ++ +S+
Sbjct: 560 AEAMELANDLVRIDAISE 577
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 1.6e-34, P = 1.6e-34
Identities = 121/435 (27%), Positives = 208/435 (47%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAF--RFFKLV 87
N + + + I+L + ++ G+ +Y C SQ + +F + KL
Sbjct: 80 NVIAKMKKFDVVINLCDHLQIMGV--SHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137
Query: 88 PNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
P + TF L++ C ++ E V ++V E G+K D +YTT+I + K+G V+
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV-EMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
+F +M N GI P+V Y +L++G +G+ A M + +KPD + FNALI A
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDA 256
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G A ++ EM + P+ T +L+ G VD AR+++ ++ K
Sbjct: 257 FVKEGKFLDAEELYNEMIRM--SIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET---K 311
Query: 267 GT-PEV--YTIAIN--C-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
G P+V YT IN C C + D A ++ +M++KG+ + + + LI G GK
Sbjct: 312 GCFPDVVAYTSLINGFCKCKKVDD---AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368
Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLK---PTVST 376
A E+ ++G+ I +Y+ L+ C N K +KAL ++E M+ ++ P + T
Sbjct: 369 NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV-KKALMIFEDMQKREMDGVAPNIWT 427
Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
N L+ LC +L K + V DM+ + ITY+I++ + V+ + L
Sbjct: 428 YNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLP 487
Query: 437 EDGVIPNLVMFKCII 451
GV PN+V + +I
Sbjct: 488 SKGVKPNVVTYTTMI 502
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 1.6e-34, P = 1.6e-34
Identities = 124/421 (29%), Positives = 212/421 (50%)
Query: 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTFN 96
+ + +M KG + Y +C +++ I EA F K+ + PT+ T+
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYT 327
Query: 97 MLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
+L+ S+C S + SE A +++ ++E G+K + YT LI + K + E+ +M+
Sbjct: 328 VLIKSLCGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE 386
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
G+ PNV TY ALI+G K G + A +M S+ + P+ +N LI +S V +
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHK 445
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VY 272
A VL +M E V PD +T +L+ +G D A Y+++ N +G P+ Y
Sbjct: 446 AMGVLNKM-LE-RKVLPDVVTYNSLIDGQCRSGNFDSA---YRLLSLMNDRGLVPDQWTY 500
Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
T I+ ++ E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ +
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560
Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQL 390
+ +++++L+ G C++ K ++A L E M I L+PTVST LI L DGD
Sbjct: 561 KNCLPNSLTFNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD-F 618
Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
M S G P+ TY+ + R+ + ++++ +E+GV P+L + +
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678
Query: 451 I 451
I
Sbjct: 679 I 679
|
|
| TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 2.4e-34, P = 2.4e-34
Identities = 107/381 (28%), Positives = 185/381 (48%)
Query: 71 CK-SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKAD 126
C+ SQ ++ +F + KL P++ TF L++ C + + + ++V G K +
Sbjct: 127 CRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG-MGYKPN 185
Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
+Y T+I KS +VD ++ + M GI P+V TY +LI G +G+ + A
Sbjct: 186 VVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS 245
Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
M + + PD FNALI AC + G V A + EM +DPD +T L+
Sbjct: 246 CMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRR--SLDPDIVTYSLLIYGLCM 303
Query: 247 AGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
++D A E++ + KG P+V Y+I IN ++ E ++ +M+++GV+ +
Sbjct: 304 YSRLDEAEEMFGFMVS---KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360
Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 362
V + LI AGK+ A EI + G+ II+Y+ L+ G C N K +KAL +
Sbjct: 361 TVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKI-EKALVIL 419
Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
M+ + + T N +I +C ++ ++ + GL P+ TY+ +++ +K
Sbjct: 420 ADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKK 479
Query: 423 DDVEVGLMLLSQAKEDGVIPN 443
L + KEDG++PN
Sbjct: 480 GLRREADALFRKMKEDGILPN 500
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 108/428 (25%), Positives = 206/428 (48%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN-KASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ A +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
A + +M +DPD T +L+ ++D+A+++++ M+ K T+
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
C ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G
Sbjct: 407 IKGFC-KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465
Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
+ I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 466 VPPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 524
Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
++ + G+ PN +TY+ ++ K ++ LL + KEDG +PN + +I
Sbjct: 525 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRA 584
Query: 454 CSRRYEKA 461
R +KA
Sbjct: 585 HLRDGDKA 592
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 106/418 (25%), Positives = 201/418 (48%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHN-KASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ AF +L +++ L+ +Y T+I K +D +F EM
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M + + PD F+ALI A + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
A + EM +DP +T +L+ ++D A+++++ M+ K+ T+
Sbjct: 345 AEKLYDEMVKR--SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
C E V+ +M+++G++ + V + LI AG + A EI +E + G
Sbjct: 403 IKGFCKYKRVEE-GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
+ I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 462 VPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520
Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN + +I
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 1.2e-32, P = 1.2e-32
Identities = 117/443 (26%), Positives = 209/443 (47%)
Query: 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
SY+RL I + + ++ + G + Y+A +S++ I A FK +
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 88 -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
+P + T+N+L+ + + + A + ++ G + Y TLI K K+D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
F++ M G+EPN+ +Y +I+G + G++ + M + D V +N LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G +A + AEM H + P IT +L+ + AG ++RA E + +
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAF 324
YT ++ SQ G A V +M G P V +ALI+ GH GK+E A
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN--GHCVTGKMEDAI 435
Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
+L++ K +G+S ++SYS+++ + + +AL + M +KP T ++LI
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
C+ + + ++ +M +GL P+ TY+ L+ A + D+E L L ++ E GV+P++
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 445 VMFKCII-GMC--SRRYEKARTL 464
V + +I G+ SR E R L
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLL 578
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 1.6e-32, P = 1.6e-32
Identities = 117/479 (24%), Positives = 224/479 (46%)
Query: 91 TLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
T ST F++L+ C + + A + L++E G + ++T ++ +++ +
Sbjct: 152 TKSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWV 211
Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
+ +M I+ NV+T+ +I+ K G++ KA G GIM +KP V +N L+
Sbjct: 212 FYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFS 271
Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
G ++ A +++EM ++ PD T ++ N G RA EV + + + +
Sbjct: 272 LRGRIEGARLIISEMKSK--GFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPD 326
Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
Y I I CS GD E A + D+M K+G++P + LI K+EAA +++
Sbjct: 327 SVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIR 386
Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
E + +GI + ++Y+ L+ G C + + +KA L++ M + ++PT T +LI LC
Sbjct: 387 EIREKGIVLDSVTYNILINGYCQHG-DAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRK 445
Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
++ + E+ + G+ P+ + + L+ +++ LL + + P+ V +
Sbjct: 446 NKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTY 505
Query: 448 KCII-GMCSR-RYEKARTLN----------EHVLSFNSGRPQIENKW-TSLALMVYREAI 494
C++ G+C ++E+AR L +H+ S+N+ K T A MV E +
Sbjct: 506 NCLMRGLCGEGKFEEARELMGEMKRRGIKPDHI-SYNTLISGYSKKGDTKHAFMVRDEML 564
Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 553
G PT+ + +L L ++ E L+ + S+ CS+I+ D +
Sbjct: 565 SLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDAK 623
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 2.2e-32, P = 2.2e-32
Identities = 105/417 (25%), Positives = 196/417 (47%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP--- 88
N L +GR+SE ++L++ M G D + N +C S K + K+V
Sbjct: 166 NGLCLEGRVSEALELVDRMVEMGHKP-DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGC 224
Query: 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
P T+ +++V S + A ++LR ++E +K D Y+ +I K G +D F
Sbjct: 225 QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFN 284
Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
+F+EM GI N+ TY LI G AG+ M + + P+ V F+ LI +
Sbjct: 285 LFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFV 344
Query: 209 QSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
+ G + A ++ EM +H + PD IT +L+ +D+A ++ ++
Sbjct: 345 KEGKLREAEELHKEM---IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 401
Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
+ I IN + + ++ M+ +GV+ D V + LI GK+ A E+
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461
Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
QE ++ + I++Y L+ G C N ++ +KALE++E ++ K++ + N +I +C+
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGES-EKALEIFEKIEKSKMELDIGIYNIIIHGMCN 520
Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
++ ++ + G+ P TY+I++ +K + +L + +EDG P+
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WLC6 | PP349_ARATH | No assigned EC number | 0.6765 | 0.9901 | 0.6483 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 713 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.0 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 1326 bits (3432), Expect = 0.0
Identities = 535/692 (77%), Positives = 615/692 (88%), Gaps = 2/692 (0%)
Query: 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
E + +YNRL+R GRI +CIDLLEDME++GLLDMDK+YHA+FF CK Q+A+KEAFRF
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428
Query: 84 FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
KL+ NPTLSTFNMLMSVCASS+D +GA +VLRLVQEAGLKADCKLYTTLI+TCAKSGKV
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
DAMFEVFHEMVNAG+E NVHT+GALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNAL
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
I+ACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GALMKACANAGQVDRA+EVY+MIH+Y
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
NIKGTPEVYTIA+N CSQ GDW+FA S+YDDM KKGV PDEVF SAL+D AGHAG ++ A
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
FEILQ+A+ QGI +G +SYSSLMGACSNAKNW+KALELYE +KSIKL+PTVSTMNALITA
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
LC+G+QLPK +EVLS+MK LGLCPNTITYSILLVA ERKDD +VGL LLSQAKEDG+ PN
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503
LVM +CI G+C RR+EKA L E V+SF+SGRPQIENKWTS ALMVYRE I AGT+PT+E
Sbjct: 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848
Query: 504 VVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 563
V+S+VLGCLQLP++A +R RL+ENLG+SAD+ K+SNL +L+DGFGEYDPRAFSLLEEAAS
Sbjct: 849 VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAAS 908
Query: 564 FGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQ 623
G+VP VSFK+ P+V+DA +L + A+VYLLTILKGL+HRLAAGAKLPNV ILLP EK +
Sbjct: 909 LGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKE 968
Query: 624 IMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFS 683
I + GEKTI++A R QA+AALLRRLGLPYQG+ S+GK+RINGL+L+RWFQPKL SPFS
Sbjct: 969 IYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESHGKLRINGLSLRRWFQPKLKSPFS 1028
Query: 684 GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 713
GKP +LSS Q LGK I QQR IR GNLSLE
Sbjct: 1029 GKPEDLSSSQSRLGKGIADQQRAIRLGNLSLE 1060
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 6e-16
Identities = 87/388 (22%), Positives = 147/388 (37%), Gaps = 39/388 (10%)
Query: 81 FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
F +L +P L T ++S C D ++ V + G D + +LI
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
G +VF M + ++ A+I G K G KA Y +M NV PD +
Sbjct: 337 GSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 201 NALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
++++AC G +D + LAE + V + AL++ + +D+A EV+
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYV----VVANALIEMYSKCKCIDKALEVFH 448
Query: 259 MIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
I + + I T + + +N F ++ + P+ V L A +
Sbjct: 449 NIPEKDVISWTSIIAGLRLNNRC------FEALIFFRQMLLTLKPNSVTLIAALSACARI 502
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL------- 370
G + EI GI G NA L+LY +
Sbjct: 503 GALMCGKEIHAHVLRTGI--------GFDGFLPNA-----LLDLYVRCGRMNYAWNQFNS 549
Query: 371 -KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
+ V + N L+T + +E+ + M G+ P+ +T+ LL AC R V GL
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 430 MLLSQAKED-GVIPNLVMFKCIIGMCSR 456
+E + PNL + C++ + R
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGR 637
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 2e-15
Identities = 96/464 (20%), Positives = 181/464 (39%), Gaps = 79/464 (17%)
Query: 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
HD + QL + L G++ + + LLE M+ + + Y A F +C+ ++A++E R
Sbjct: 52 HDSNSQLRA---LCSHGQLEQALKLLESMQELRVPVDEDAYVA-LFRLCEWKRAVEEGSR 107
Query: 83 FFKLVPNPTLSTF-----NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
+ + N ++S+ + A+ V + E L + + L+
Sbjct: 108 VCSRA-LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGY 162
Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
AK+G D ++H M+ AG+ P+V+T+ ++ C +A+ + + + D
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222
Query: 198 VVFNALIT---ACGQSGAVDRAFDVLAEM--------------NAEVHP----------- 229
V NALIT CG + FD + N E
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282
Query: 230 -VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW--- 285
VDPD +TI +++ AC G RE++ + K V I G W
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 286 ----------------------------EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
+ A Y M + V PDE+ +++++
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
G ++ ++ + A+ +G+ ++ ++L+ S K KALE++ ++ + V +
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISW 458
Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
++I L ++ + + M L L PN++T L AC R
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACAR 501
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 7e-14
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
Y TLI K GKV+ ++F+EM GI+PNV+TY LIDG K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-12
Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 18/213 (8%)
Query: 55 GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114
L+DM ++ C I++A F +P T +N +++ A SE A +
Sbjct: 264 ALIDM--------YSKCGD---IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
++++G+ D ++ +I ++ ++ + ++ G ++ AL+D +K
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
G++ A + M KN+ + +NALI G G +A ++ M AE V P+H
Sbjct: 373 WGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNH 426
Query: 235 ITIGALMKACANAGQVDRAREVYK-MIHKYNIK 266
+T A++ AC +G ++ E+++ M + IK
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-11
Identities = 88/393 (22%), Positives = 156/393 (39%), Gaps = 25/393 (6%)
Query: 71 CKSQKAIKEAFRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
C + E F + TL ST++ L+ C + K V V+ +G + D
Sbjct: 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
+ ++ K G + +F EM E N+ ++G +I G AG +AF + M
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREM 215
Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
+ F ++ A G+ RA L + V D AL+ + G
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSA-RAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCG 273
Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCC----SQTGDWEFACSVYDDMTKKGVIPDE 304
++ AR V+ G PE T+A N + G E A +Y +M GV D+
Sbjct: 274 DIEDARCVF--------DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
S +I +E A + G + I++ ++L+ S + A +++
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
M + + + NALI + + K +E+ M + G+ PN +T+ +L AC
Sbjct: 386 MP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 425 VEVGL-MLLSQAKEDGVIPNLVMFKCIIGMCSR 456
E G + S ++ + P + + C+I + R
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 5e-11
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
P+V TY LIDG K G+V +A + M+ + +KP+ ++ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 5e-11
Identities = 69/353 (19%), Positives = 152/353 (43%), Gaps = 14/353 (3%)
Query: 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
+ +A R F +P L+++ ++ + + AF + R + E G A+ + + ++
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
A G A ++ ++ G+ + ALID +K G + A + M K
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT--- 290
Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
V +N+++ G + A + EM V D T +++ + ++ A++
Sbjct: 291 -VAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
+ + + T ++ S+ G E A +V+D M +K +I +ALI G+
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALIAGYGN 403
Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVS 375
G+ A E+ + +G++ +++ +++ AC + ++ E+++ M ++ ++KP
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463
Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
+I L L E + ++ P ++ LL AC ++E+G
Sbjct: 464 HYACMIELLGREGLLD---EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 3e-10
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
P V T N LI C ++ + +++ ++MK G+ PN TYSIL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 41/181 (22%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
+ D + L+T GK E+F+ MV +G+ P+ T+ +L+ C+++G V +
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610
Query: 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
+ M K ++ P+ + ++ G++G + A++ + +M P+ PD GAL+
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-----PITPDPAVWGALLN 665
Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
AC V+ + I + + + Y + N + G W+ V M + G+
Sbjct: 666 ACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724
Query: 303 D 303
D
Sbjct: 725 D 725
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 5e-10
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
+++Y++L+ ++AL+L+ MK +KP V T + LI LC
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 90/409 (22%), Positives = 161/409 (39%), Gaps = 43/409 (10%)
Query: 21 YAHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLD---MDKVYHARFFNVCKS 73
+A DVS N LI+ G E + ME K + M Y
Sbjct: 319 FAVDVS----VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL----P 370
Query: 74 QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
KA+ E + + +P T ++S CA D + ++ L + GL + +
Sbjct: 371 DKAL-ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
LI +K +D EVFH + E +V ++ ++I G + +A + M
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT- 484
Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV--HPVDPDHITIGALMKACANAGQV 250
+KP+ V A ++AC + GA+ E++A V + D AL+ G++
Sbjct: 485 LKPNSVTLIAALSACARIGALMCG----KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540
Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
+ A + H+ ++ + I + G A +++ M + GV PDEV +L
Sbjct: 541 NYAWNQFN-SHEKDVVS----WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 311 IDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
+ +G V E + + I+ + Y+ ++ A +A M I
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PIT 654
Query: 370 LKPTVSTMNALITALCDGDQLPKTMEV--LSDMKSLGLCPNTITYSILL 416
P A+ AL + ++ + +E+ L+ L PN++ Y ILL
Sbjct: 655 PDP------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
+ ++N+L++ + A ++ + E+G+ D + +L+ C++SG V E FH
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613
Query: 152 EM-VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
M I PN+ Y ++D +AG++ + AY + + PD V+ AL+ AC
Sbjct: 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTE---AYNFINKMPITPDPAVWGALLNACRIH 670
Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC---ANAGQVDRAREVYKMI 260
V+ L E+ A+ H + D ++G + C A+AG+ D V K +
Sbjct: 671 RHVE-----LGELAAQ-HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
PD V +N LI + G V+ A + EM + + P+ T L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
Y TLI K+G+V+ E+F EM GIEP+V
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-06
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
Y L+ AK+G D V EM +G++P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
Y I+ + G E A ++++M K+G+ P+ S LID
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
Y I+ + G E A ++ +M ++G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
TY LIDG KAG+V +A + M+ + ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 9e-05
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
PD V + LID GKVE A ++ E K +GI + +YS L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
+ TY AL+ AKAG A M++ +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAF 182
G++P+V TY LIDG +AG+V +A
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAV 27
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 4e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
K +KPD V +N LI ++G VD A ++L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
Y +LI+ K+GK++ E+F EM G+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 6e-04
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
PD +T L+ G+V+ A +++ + K IK Y+I I+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 9e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
+ +Y++L+ A + A + AL + E MK+ LKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
P+ +TY+ L+ +K VE L L ++ K+ G+ PN+ + +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
++Y++L+ A ++ALEL++ MK ++P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.71 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.68 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.63 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.61 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.58 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.48 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.47 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.45 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.44 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.43 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.42 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.42 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.42 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.35 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.32 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.29 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.29 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.22 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.22 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.21 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.21 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.18 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.15 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.15 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.1 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.08 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.07 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.04 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.02 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.01 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.99 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.95 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.93 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.83 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.83 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.81 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.8 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.77 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.75 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.74 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.71 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.65 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.64 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.62 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.61 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.6 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.59 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.53 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.52 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.5 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.47 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.47 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.41 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.4 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.39 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.35 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.31 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.3 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.28 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.26 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.25 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.25 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.23 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.23 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.21 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.2 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.2 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.2 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.14 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.14 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.14 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.08 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.07 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.04 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.02 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.0 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.95 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.95 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.94 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.92 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.92 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.92 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.91 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.9 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.89 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.82 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.79 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.78 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.64 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.59 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.57 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.56 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.51 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.5 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.5 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.49 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 97.49 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.49 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.44 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.39 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.36 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.34 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.25 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.2 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.15 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.15 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.11 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.08 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.0 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.98 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.95 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.88 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.87 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.85 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.85 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.82 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.74 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.74 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.72 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.72 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.68 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.68 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.63 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.54 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.49 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.31 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.24 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.2 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.19 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.1 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.09 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.08 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.07 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.03 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.98 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.9 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.86 | |
| smart00463 | 80 | SMR Small MutS-related domain. | 95.83 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.82 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.74 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.65 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.58 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.43 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.39 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.36 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.36 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.32 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.12 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.96 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.95 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.82 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.75 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.66 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.66 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.45 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.41 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.39 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.37 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.32 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.3 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.29 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.13 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.07 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.94 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 93.94 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.87 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.85 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.74 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.52 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.26 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.23 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.08 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.07 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.06 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.0 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.99 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.97 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.96 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 92.91 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.89 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 92.83 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.7 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.5 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.45 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.92 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.33 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.19 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.15 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.65 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 90.14 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.07 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.93 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.87 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.59 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 89.54 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.44 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.12 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 88.94 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 88.91 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 88.84 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 88.66 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 88.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.33 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 88.23 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.81 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.09 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.06 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.05 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.03 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 86.57 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 86.51 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.41 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 86.2 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.11 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.05 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 85.95 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.67 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 85.6 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 85.51 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.29 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.68 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.64 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 84.43 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 83.98 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.96 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.32 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.15 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 82.74 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 82.67 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 82.53 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 82.45 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.37 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 82.26 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.2 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.78 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 80.33 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-117 Score=1008.44 Aligned_cols=692 Identities=77% Similarity=1.226 Sum_probs=674.7
Q ss_pred CCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 005127 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (713)
Q Consensus 22 ~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (713)
+.+..+++..|+.|++.|++++|+++|++|.+.|+++++..++..++..|.+.|.+++|+++|+.|+.||..+||.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005127 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (713)
|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (713)
Q Consensus 182 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 261 (713)
+++|++|.+.|+.||.++|+.||.+|++.|++++|.++|++|.....++.||.++|+++|.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987556899999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005127 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (713)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 341 (713)
+.++.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (713)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (713)
|++||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCCccccccHHHHHHHHHHHHHcCCCcc
Q 005127 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT 501 (713)
Q Consensus 422 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~P~ 501 (713)
.|++++|.++|++|.+.|+.||..+|++||++|.+++++|+.+.++...|+.+.+.+...|+.+|+.+|++|++.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999988899999999999999998888889999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHcCCCcccccccccccchhcccccchHHHHHHHHHHhCCCCCCcccCCCCeeecc
Q 005127 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDA 581 (713)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~~~~~~~ 581 (713)
.+||+.+|+|+...++.+++..|.+.+++.+...++..|+++++++|.+.++|+.++++|..+|++|+.+++.+.|++|.
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~ 926 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDA 926 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEc
Confidence 99999999999999999999999999999999999999999999999888899999999999999999998777999999
Q ss_pred ccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccCCccceeccCCchhhhhhhhhhHHHHHHHHHhCCCCCCCCccc
Q 005127 582 RKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYG 661 (713)
Q Consensus 582 ~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~g 661 (713)
+++++++|++++++||+.|+++++++.++|++.+++|++++++.++.|+++++..++++++|.+|||||++|||++++.|
T Consensus 927 ~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~g 1006 (1060)
T PLN03218 927 EELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESHG 1006 (1060)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEechHhHHhhhcCcCCCCCCCCCCCCch--hhhhhhHHHHHhhhhccCCcCC
Q 005127 662 KIRINGLALKRWFQPKLASPFSGKPGELSS--LQLGKFITHQQRNIRTGNLSLE 713 (713)
Q Consensus 662 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 713 (713)
||+++|+++++|||+|.++||+++|+++++ ++|||+|+|||||||+||+|||
T Consensus 1007 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1060)
T PLN03218 1007 KLRINGLSLRRWFQPKLKSPFSGKPEDLSSSQSRLGKGIADQQRAIRLGNLSLE 1060 (1060)
T ss_pred eEEeccHHHHHHhcccCCCCCCCCccccccchhhhhhhHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999774 9999999999999999999996
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-81 Score=729.08 Aligned_cols=583 Identities=19% Similarity=0.278 Sum_probs=490.0
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 005127 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (713)
Q Consensus 27 ~~~~~~~~L~----~~g~~~~A~~l~~~m~~~~~~~~~~~~----------------------------------~~~l~ 68 (713)
++.++||.++ +.|++++|+++|++|...|+.|+...+ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 4556666655 899999999999999998877654333 34456
Q ss_pred HHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005127 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (713)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 148 (713)
..+.+.|++++|.++|+.|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 005127 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (713)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (713)
++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||.++||++|.+|++.|++++|+++|++|...
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999999999999988888888888888888888888875 467777777777777777777777777777654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH--------------------
Q 005127 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA-------------------- 288 (713)
Q Consensus 229 ~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A-------------------- 288 (713)
++.||..||++++.+|++.|+++.|.++++.|.+.|+.++..+||+||++|++.|++++|
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 566666666666666666666666666666666666655555555555555555555555
Q ss_pred -----------HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 289 -----------CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (713)
Q Consensus 289 -----------~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 357 (713)
+.+|++|.. ++.||..||++++.+|++.|.++.+.+++..+.+.|+.+|..++|+||++|+++|++++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 455555543 47888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 005127 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK- 436 (713)
Q Consensus 358 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~- 436 (713)
|.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.
T Consensus 543 A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 543 AWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 99999987 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCCccccccHHHHHHHHHHHHHcCCCccHHHHHHHHhhcCCCC
Q 005127 437 EDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 516 (713)
Q Consensus 437 ~~g~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~g~~P~~~~~~~~l~~~~~~~ 516 (713)
+.|+.|+..+|+||+++|+| +|++.+ |.+++++| +++||..+|++++++|+.++
T Consensus 618 ~~gi~P~~~~y~~lv~~l~r----~G~~~e-------------------A~~~~~~m---~~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 618 KYSITPNLKHYACVVDLLGR----AGKLTE-------------------AYNFINKM---PITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HhCCCCchHHHHHHHHHHHh----CCCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 57999999999999999876 333333 44556665 47999999999999999999
Q ss_pred chhHHHHHHHHc-CCCcc-cccccccccchhcccccchHHHHHHHHHHhCCCC--CCcccCCC----CeeeccccCcchH
Q 005127 517 NADIRERLVENL-GVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIV--PCVSFKEI----PVVVDARKLEIHT 588 (713)
Q Consensus 517 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~g~~--p~~~~~~~----~~~~~~~~~~~~~ 588 (713)
+.++++.+.+.+ .+.|+ +..|..+.+++...|+|++ |.+++++|+++|+. ||+||++. |.|+.+|++||++
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~-a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~ 750 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE-VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH-HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcch
Confidence 999999887654 34443 3333334567888999987 55999999999996 99999864 7889999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCCeEEEccC---CccceeccCCchh------hhhhhhhhHHHHHHHHHh
Q 005127 589 AKVYLLTILKGLRHRLAAGAKLPNVNILLPV---EKTQIMSVGGEKT------IDIAERTTQAIAALLRRL 650 (713)
Q Consensus 589 ~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~---~~~~~~~~~~~~~------~~~~~~~~~~v~~~l~~~ 650 (713)
.+||. .|+.|..+|++.||+||+.+++++ +|+..+++||||+ ++++++++++|.||||-+
T Consensus 751 ~~i~~--~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c 819 (857)
T PLN03077 751 KEINT--VLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMC 819 (857)
T ss_pred HHHHH--HHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeC
Confidence 99997 999999999999999999998876 5899999999998 888999999999999954
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-76 Score=674.93 Aligned_cols=519 Identities=21% Similarity=0.308 Sum_probs=482.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (713)
.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+||++
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~l 195 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTI 195 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999997 6899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcC
Q 005127 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (713)
Q Consensus 169 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g 248 (713)
|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+. ++.||..+|++|+++|+++|
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT--GVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh--CCCccceeHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999875 88999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (713)
Q Consensus 249 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 328 (713)
++++|.++|+.|.+ +|..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|.
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999975 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005127 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (713)
Q Consensus 329 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (713)
.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||..+||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999997 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCCccccccHHHHH
Q 005127 409 TITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 487 (713)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~ 487 (713)
.+||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|++||++|++ +|++.+ |.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~~e-------------------A~ 482 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EGLLDE-------------------AY 482 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cCCHHH-------------------HH
Confidence 99999999999999999999999999986 5999999999999999876 343433 33
Q ss_pred HHHHHHHHcCCCccHHHHHHHHhhcCCCCchhHHHHHHHH-cCCCcc-cccccccccchhcccccchHHHHHHHHHHhCC
Q 005127 488 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN-LGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFG 565 (713)
Q Consensus 488 ~~~~~m~~~g~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~g 565 (713)
++|++| ++.||..+|++++++|+.+++.+.++.+.+. +++.|+ ...|..+.+++...|+|++ |.+++++|.++|
T Consensus 483 ~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~-A~~v~~~m~~~g 558 (697)
T PLN03081 483 AMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE-AAKVVETLKRKG 558 (697)
T ss_pred HHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHH-HHHHHHHHHHcC
Confidence 444443 6899999999999999999999988887765 455554 4566666677888899976 779999999999
Q ss_pred CC--CCcccCCC----CeeeccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccC----CccceeccCCchh---
Q 005127 566 IV--PCVSFKEI----PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPV----EKTQIMSVGGEKT--- 632 (713)
Q Consensus 566 ~~--p~~~~~~~----~~~~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~----~~~~~~~~~~~~~--- 632 (713)
+. ||++|++. |.|+.+|.+||++.+||. .|+.|..+|++.||+||+.+++|| +|+..+++||||+
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~--~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a 636 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ--KLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIA 636 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHH--HHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHH
Confidence 95 99999754 689999999999999997 999999999999999999999998 6888999999998
Q ss_pred ---hhhhhhhhHHHHHHHHHh
Q 005127 633 ---IDIAERTTQAIAALLRRL 650 (713)
Q Consensus 633 ---~~~~~~~~~~v~~~l~~~ 650 (713)
++++++++++|.||||-+
T Consensus 637 ~~l~~~~~~~~i~i~knlr~c 657 (697)
T PLN03081 637 FGLINTSEWTPLQITQSHRIC 657 (697)
T ss_pred hhCccCCCCCeEEEecCCEEC
Confidence 888899999999999954
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-66 Score=602.94 Aligned_cols=518 Identities=19% Similarity=0.290 Sum_probs=451.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHHHHHHhh
Q 005127 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFFNVCKSQ 74 (713)
Q Consensus 29 ~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~----------------------------------~~~l~~~~~~~ 74 (713)
......|++.|++++|+.+|++|.+.|+.|....+ ...++..+.+.
T Consensus 55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~ 134 (857)
T PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC
Confidence 44455667999999999999999998765443322 13344456678
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH------------------------
Q 005127 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY------------------------ 130 (713)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~------------------------ 130 (713)
|+++.|.++|+.|++||+++||++|.+|++.|++++|+++|++|...|+.||.+||
T Consensus 135 g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 214 (857)
T PLN03077 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214 (857)
T ss_pred CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999988887776
Q ss_pred -----------HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005127 131 -----------TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (713)
Q Consensus 131 -----------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 199 (713)
++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||.+|
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 455666677777778888887775 56788888888888888888888888888888889999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005127 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (713)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 279 (713)
|+.+|.+|++.|+.+.|.+++..|... |+.||..+|++|+.+|+++|++++|.++|+.|.. ||..+||++|.+|
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~ 364 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGY 364 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999999988875 7889999999999999999999999999999864 5678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (713)
Q Consensus 280 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 359 (713)
++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++++.|.+.|+.|+..+||+||++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (713)
Q Consensus 360 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 439 (713)
++|++|. .+|..+||+||.+|+++|+.++|+++|++|.. ++.||.+||+++|.+|++.|.++.+.+++..+.+.|
T Consensus 445 ~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 9999998 58999999999999999999999999999986 599999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCCccccccHH------------HHHHHHHHHHHcCCCccHHHHHH
Q 005127 440 VIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSK 507 (713)
Q Consensus 440 ~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~------------~A~~~~~~m~~~g~~P~~~~~~~ 507 (713)
+.+|..++++||++|++ +|++.+|...|+.+ ..+..+|+. +|+.+|++|...|+.||.+||..
T Consensus 520 ~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 520 IGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred CCccceechHHHHHHHH----cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 99999999999999654 67777777777776 667777876 59999999999999999999999
Q ss_pred HHh-hcCCC---CchhHHHHHHHHcCCCcccccccccccchhcccccchHHHHHHHHHHhCCCCCCc
Q 005127 508 VLG-CLQLP---YNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570 (713)
Q Consensus 508 ~l~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~g~~p~~ 570 (713)
++. |++.+ ...++++.|.+.+|+.|+..+|+++..++...|+++ +|.+++++| .+.|+.
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~-eA~~~~~~m---~~~pd~ 657 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT-EAYNFINKM---PITPDP 657 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH-HHHHHHHHC---CCCCCH
Confidence 984 55433 345678888888999999999986555555566554 488888887 355654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=554.69 Aligned_cols=465 Identities=23% Similarity=0.399 Sum_probs=418.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHhC
Q 005127 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASS 105 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 105 (713)
..++.+.+.|.+++|+.+|+.|.. | +...+..++..|.+.|++++|.++|+.|. .||..+||++|.+|++.
T Consensus 411 ~li~~~~~~g~~~eAl~lf~~M~~----p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~ 485 (1060)
T PLN03218 411 KFFKACKKQRAVKEAFRFAKLIRN----P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCC----C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 344556689999999999999974 3 45556678888999999999999999874 68999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005127 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 185 (713)
|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|
T Consensus 486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005127 186 GIMRS--KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (713)
Q Consensus 186 ~~m~~--~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 263 (713)
++|.. .|+.||.++|++||.+|++.|++++|.++|++|... ++.|+..+|+++|.+|++.|++++|.++|++|.+.
T Consensus 566 ~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 99976 678999999999999999999999999999999875 88999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005127 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (713)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 343 (713)
|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+||
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN 723 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 005127 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-- 421 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-- 421 (713)
+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|.+|.+.|+.||..+|++++..|.+
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y 803 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF 803 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred --c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHHHHHhhhccCCCCcc
Q 005127 422 --K-------------------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI 478 (713)
Q Consensus 422 --~-------------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~ 478 (713)
. +..++|..+|++|++.|+.||..+|+.+|.++.. ....+..+.+.+.. .. ...+
T Consensus 804 ~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~-~~~~ 881 (1060)
T PLN03218 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SA-DSQK 881 (1060)
T ss_pred HHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CC-CCcc
Confidence 1 2347899999999999999999999999965533 34444444432211 01 1111
Q ss_pred c----------cccHHHHHHHHHHHHHcCCCccHH
Q 005127 479 E----------NKWTSLALMVYREAIVAGTIPTVE 503 (713)
Q Consensus 479 ~----------~~~~~~A~~~~~~m~~~g~~P~~~ 503 (713)
. ..+..+|+.+|++|...|+.|+..
T Consensus 882 ~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 882 QSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 1 123457999999999999999874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=510.58 Aligned_cols=403 Identities=18% Similarity=0.262 Sum_probs=205.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHhCCChHHH
Q 005127 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A 111 (713)
.+.|++++|+++|++|...+....+...+..++..|.+.++++.|.+++..+. .||..+||.++.+|++.|+++.|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 35555555555555555443222233333344444444445555555444332 34555555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 112 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
.++|+.|. .||.++||++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+.
T Consensus 178 ~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 178 RRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred HHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 55555543 24455555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 005127 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (713)
Q Consensus 192 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 271 (713)
|+.||..+||+||.+|++.|++++|.++|++|. .+|.++||++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 555555555555555555555555555555443 23445555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
|++++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555554432 344555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005127 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLM 430 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 430 (713)
.|+.++|.++|++|.+.|+.||..||+++|.+|++.|..++|.++|++|.+ .|+.|+..+|+.++.++++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 555555555555555555555555555555555555555555555555543 3455555555555555555555555554
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 431 LLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 431 ~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
++++| ++.|+..+|++|+++|.
T Consensus 484 ~~~~~---~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 484 MIRRA---PFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHC---CCCCCHHHHHHHHHHHH
Confidence 44322 34455555555555544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-24 Score=254.31 Aligned_cols=509 Identities=16% Similarity=0.076 Sum_probs=313.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHH
Q 005127 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEG 110 (713)
Q Consensus 34 ~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 110 (713)
.+.+.|++++|+..++.+...+ |.+......+...+...|++++|.++|+.+. +.+...|..+...+...|++++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Confidence 3345566666666665555443 3334444445555555566666666665432 2344455555555666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005127 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (713)
Q Consensus 111 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 190 (713)
|...++.+.+.. +.+......++..+.+.|++++|.++++.+.... +.+..+|..+...|...|++++|...|+++.+
T Consensus 416 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 416 AIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 666666655543 1223344455566666666666666666665542 34566677777777777777777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH
Q 005127 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (713)
Q Consensus 191 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 270 (713)
.. +.+...+..+...+...|++++|.+.|+++... .+.+..++..+...+.+.|+.++|..+|+.+.+.+ +.+..
T Consensus 494 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 568 (899)
T TIGR02917 494 IE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIE 568 (899)
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchh
Confidence 53 334556666777777777777777777777653 13355667777777777777777777777776654 44556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 350 (713)
.+..++..|.+.|++++|..+++.+..... .+..+|..+..+|...|++++|...++.+.+.. +.+...+..+..+|.
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA 646 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 677777777888888888888877776543 356677777888888888888888888777654 345667777778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005127 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430 (713)
Q Consensus 351 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 430 (713)
+.|++++|..+|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|..
T Consensus 647 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888777643 3456777888888888888888888888877653 3456667777778888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHHHHHhhhccCCCCcccc------------ccHHHHHHHHHHHHHc
Q 005127 431 LLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIEN------------KWTSLALMVYREAIVA 496 (713)
Q Consensus 431 ~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~~~------------~~~~~A~~~~~~m~~~ 496 (713)
.|+.+.+.+ |+..++..+..++.+ ++++|....+...... |.+.. +-...|...|++++..
T Consensus 725 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 725 AYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 888877643 444555555555443 4555544433222211 11111 1123478888888764
Q ss_pred CCCccHH-HHHHHH-hhcCCCCchhHHHHHHHHcCCCcc-cccccccccchhcccccchHHHHHHHHHHhC
Q 005127 497 GTIPTVE-VVSKVL-GCLQLPYNADIRERLVENLGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASF 564 (713)
Q Consensus 497 g~~P~~~-~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~ 564 (713)
.|+.. ++..+. .+...+. .+..+.+.+.+...|+ +..+.++..++-..|++++ |...++.+.+.
T Consensus 800 --~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-A~~~~~~a~~~ 866 (899)
T TIGR02917 800 --APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR-ALPLLRKAVNI 866 (899)
T ss_pred --CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH-HHHHHHHHHhh
Confidence 34443 333322 1222222 3333333333333443 2222223344455666544 77888888755
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-24 Score=254.27 Aligned_cols=512 Identities=13% Similarity=0.058 Sum_probs=398.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCC
Q 005127 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 106 (713)
.....+.+.|++++|.+.|+++.+.. |.+...+..+...+...|+.++|++.|+.+. +.+...+..++..+.+.|
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 445 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG 445 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcC
Confidence 33445568999999999999998876 6666677777788888899999999998653 234456677788899999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005127 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (713)
Q Consensus 107 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 186 (713)
++++|..+++.+.... +++..++..+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 446 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998753 5678889999999999999999999999998764 3456778889999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005127 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (713)
Q Consensus 187 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 266 (713)
++.... +.+..++..+...+.+.|+.++|..++.++... .+.+...+..+...|.+.|++++|..+++.+.+.. +
T Consensus 524 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 524 KVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred HHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 998764 457788899999999999999999999998754 24456678889999999999999999999998755 6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (713)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 346 (713)
.+..+|..+...|...|++++|...|+++.+.... +...+..+..++...|++++|...+..+.+.. +.+..++..+.
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 67889999999999999999999999999876543 66778889999999999999999999998764 45678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (713)
Q Consensus 347 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (713)
..+.+.|++++|.++++.+.+.. +++...+..+...|...|++++|++.|+++... .|+..++..+..++.+.|+++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHH
Confidence 99999999999999999998765 457778888999999999999999999999875 466678888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHHHHHhhhccCCCCccccccH-----------HHHHHHHHHH
Q 005127 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT-----------SLALMVYREA 493 (713)
Q Consensus 427 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~~~~~~-----------~~A~~~~~~m 493 (713)
+|.+.++.+.+.. ..+...+..+..+|.. .+++|....+......+ .+...+. ..|+..+++.
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~A~~~~~~~ 829 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP---DNAVVLNNLAWLYLELKDPRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999988753 3456677777777653 56666665544333222 2111111 3488888888
Q ss_pred HHcCCCccHHHHHHHHhhc--CCCCchhHHHHHHHHcCCCc-ccccccccccchhcccccchHHHHHHHHHH
Q 005127 494 IVAGTIPTVEVVSKVLGCL--QLPYNADIRERLVENLGVSA-DALKRSNLCSLIDGFGEYDPRAFSLLEEAA 562 (713)
Q Consensus 494 ~~~g~~P~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~ 562 (713)
+.. .|+.......++.+ ..+.-.+..+.+.+.+...| ++..+.++...+...|++++ |..+++.++
T Consensus 830 ~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 898 (899)
T TIGR02917 830 LKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE-ARKELDKLL 898 (899)
T ss_pred Hhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHh
Confidence 764 56655443334332 23332333333333343344 45555555556666787654 778888764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-20 Score=196.91 Aligned_cols=302 Identities=13% Similarity=0.106 Sum_probs=171.9
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCC
Q 005127 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 177 (713)
.+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455677777777777777653 33445667777777777777777777777765432211 2456666777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 005127 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAR 254 (713)
Q Consensus 178 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~~~~~ll~~~~~~g~~~~A~ 254 (713)
+++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.... +..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 777777777776542 3455666777777777777777777777665431 11111 112334455555666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (713)
Q Consensus 255 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 334 (713)
..|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+......++..++.+|.+.|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666665543 233445555566666666666666666666554322223345555555555555555555555555442
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHH
Q 005127 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTI 410 (713)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~ 410 (713)
|+...+..+...+.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.++++.+|++|.+.++.|++.
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 33334455555555555555555555555443 3555555555554443 335555555555555544444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-19 Score=190.22 Aligned_cols=303 Identities=17% Similarity=0.110 Sum_probs=254.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 005127 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD---RVVFNALITACGQS 210 (713)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~li~~~~~~ 210 (713)
...+...|++++|...|.++.+.+ +.+..++..+...|...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445667899999999999999874 33567899999999999999999999999987642222 25678889999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHH
Q 005127 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWE 286 (713)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~ 286 (713)
|++++|..+|.++... .+++..++..++..|.+.|++++|.+.++.+.+.+..+. ...|..+...+.+.|+++
T Consensus 121 g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999763 245678899999999999999999999999988653332 224567888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 287 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
+|...|+++.+.... +...+..+...+.+.|++++|.+++.++.+.+......+++.++.+|.+.|++++|...++.+.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999886532 4667888889999999999999999999886533335678999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 005127 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPN 443 (713)
Q Consensus 367 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~g~~p~ 443 (713)
+. .|+...+..++..+.+.|++++|+.+|+++.+. .|+..++..++..+.. .|+.+++..++++|.+.++.|+
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 76 577777789999999999999999999998874 7999999988887765 5689999999999998877776
Q ss_pred HH
Q 005127 444 LV 445 (713)
Q Consensus 444 ~~ 445 (713)
..
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 65
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-18 Score=173.60 Aligned_cols=421 Identities=13% Similarity=0.114 Sum_probs=324.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHh
Q 005127 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCAS 104 (713)
Q Consensus 28 ~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~ 104 (713)
.+.+...+.+.|++.+|.+.....-..+ |.+.....++...+.+..+.+.....-.. ..+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 4445566779999999998887766655 33333333344444444444444332221 223456789999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHH
Q 005127 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCAKAGQVAKAFG 183 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~ 183 (713)
.|+++.|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+. .|+.....+ +.......|++.+|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999999864 335678999999999999999999999998876 566554443 4444555799999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005127 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHK 262 (713)
Q Consensus 184 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 262 (713)
.|.+..+.. +-=.+.|+.|...+-..|+...|++.|++... ++|+ ...|-.|...|...+.+++|...|.....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 999888762 22367788999999999999999999998874 4555 45788899999999999999999988776
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005127 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (713)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 342 (713)
.. +...+++..|...|...|..+.|+..|++..+.... =...|+.|..++-..|++.+|.+.+....... +......
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 54 445678888888999999999999999998876433 24689999999999999999999999988864 3346788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 005127 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACE 420 (713)
Q Consensus 343 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~ 420 (713)
+.|...|...|.+++|..+|....+. .|. ....|.|...|-+.|+.++|+..+++.++ +.|+- ..|+.+-..|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 89999999999999999999988764 455 45788999999999999999999999887 78874 67888889999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhhHHHHHHHHHHhhhc
Q 005127 421 RKDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGMCSRRYEKARTLNEHVLSF 471 (713)
Q Consensus 421 ~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~r~~~~a~~l~~a~~~~ 471 (713)
..|+++.|.+.+.+.+. +.|...- .+.|-.. +.++|.+.+|+.+|
T Consensus 434 e~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi----~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASI----YKDSGNIPEAIQSY 479 (966)
T ss_pred HhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHH----hhccCCcHHHHHHH
Confidence 99999999999988887 4565432 3333333 55666666655443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-17 Score=192.97 Aligned_cols=387 Identities=12% Similarity=0.057 Sum_probs=295.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCC---HHHHHH-----------
Q 005127 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT---LSTFNM----------- 97 (713)
Q Consensus 34 ~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~---~~~~~~----------- 97 (713)
.++..|++++|+..|++..+.. |.+...+..+...+.+.|+.++|+..|++.. .|+ ...|..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4557899999999999999876 7777778888888888999999999988653 222 222222
Q ss_pred -HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005127 98 -LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (713)
Q Consensus 98 -li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (713)
....+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 2345678899999999999998874 4466778888999999999999999999988764 234666777777774 46
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-CHHHHHHHHHHHHHc
Q 005127 177 QVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANA 247 (713)
Q Consensus 177 ~~~~A~~l~~~m~~~g~~--------pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~~~~~ll~~~~~~ 247 (713)
+.++|+.+++.+...... .....+..+...+...|++++|.+.|++.... .| +...+..+...|.+.
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc
Confidence 789998888765432100 01123455667788899999999999998764 34 456777888899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcC
Q 005127 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAG 318 (713)
Q Consensus 248 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~li~~~~~~g 318 (713)
|++++|...|+.+.+.. +.++..+..+...+...++.++|+..++.+......++.. .+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999988754 4456666666667788999999999998865443322221 1234566788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005127 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (713)
Q Consensus 319 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (713)
+.++|..+++. .+.+...+..+...|.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999998872 24566777889999999999999999999998763 4467889999999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 399 DMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 399 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
...+. .| +..++..+..++...|++++|.++++.+.+.
T Consensus 662 ~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 662 KLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 87763 45 4455666778888999999999999998874
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-15 Score=180.06 Aligned_cols=373 Identities=16% Similarity=0.127 Sum_probs=220.3
Q ss_pred CCCCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH----------------HHHHHHHHhhHHHHHHHHH
Q 005127 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRF 83 (713)
Q Consensus 20 ~~~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~ 83 (713)
-.|.++.........+++.|+.++|.+.++++.+.. |.+..++ ....+.+...|++++|++.
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~ 134 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALAS 134 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHH
Confidence 345556666666666778899999999999988876 4443332 1223355667888999888
Q ss_pred hhhCC---CCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-
Q 005127 84 FKLVP---NPTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI- 158 (713)
Q Consensus 84 ~~~~~---~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 158 (713)
|+... +++.. ............|+.++|...++++.+.. +.+...+..+...+...|+.++|++.++++.+...
T Consensus 135 ~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~ 213 (1157)
T PRK11447 135 YDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG 213 (1157)
T ss_pred HHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc
Confidence 88754 23321 11111222234588888999998888764 44666777888888888888888888888754311
Q ss_pred -----------------C--------------CCHHHH---------------------HHHHHHHHHcCCHHHHHHHHH
Q 005127 159 -----------------E--------------PNVHTY---------------------GALIDGCAKAGQVAKAFGAYG 186 (713)
Q Consensus 159 -----------------~--------------~~~~~~---------------------~~li~~~~~~g~~~~A~~l~~ 186 (713)
. |+.... ......+...|++++|+..|+
T Consensus 214 ~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 214 RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0 000000 011234566788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHH------------HHHHHHHHHcCCHHHHH
Q 005127 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRAR 254 (713)
Q Consensus 187 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~------------~~ll~~~~~~g~~~~A~ 254 (713)
+..+.. +.+...+..+...+.+.|++++|...|++...... -.++...+ ......+.+.|++++|.
T Consensus 294 ~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p-~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 294 QAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDP-HSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 887763 34677788888888888888888888888765321 11111111 12234567888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (713)
Q Consensus 255 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 334 (713)
..|+++.+.. +.+...+..+...|...|++++|++.|++..+.... +...+..+...|. .++.++|...++.+....
T Consensus 372 ~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~ 448 (1157)
T PRK11447 372 RLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQ 448 (1157)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH
Confidence 8888888765 456677778888888888888888888888776432 3334444433332 223344443333221110
Q ss_pred C--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005127 335 I--------SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 335 ~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
. ......+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...|+++.
T Consensus 449 ~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 449 RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 0001122233334444444455554444444331 1123334444444444445555544444444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-16 Score=173.22 Aligned_cols=322 Identities=9% Similarity=0.015 Sum_probs=164.5
Q ss_pred HHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 005127 70 VCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (713)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 146 (713)
.+.+.|++++|+.+++.+. +.+...+..++.++...|+++.|...++.+.+.. +.+...+..+...+...|++++|
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 3344455555555554331 2223333344444445566666666666555542 23344555555555566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 005127 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (713)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (713)
...|++..+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+.+.|++++|...++.+...
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 66666655542 22344555555556666666666666655544321 122222222 2345556666666666555432
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCC
Q 005127 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIP 302 (713)
Q Consensus 227 ~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p 302 (713)
. ..++...+..+...+.+.|++++|...|+...+.. +.+...+..+...|...|++++ |...|++.......
T Consensus 207 ~--~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~- 282 (656)
T PRK15174 207 F--ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD- 282 (656)
T ss_pred C--CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-
Confidence 1 11222233333445555666666666666555543 3345555556666666666553 55666665554332
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 005127 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST-MNALI 381 (713)
Q Consensus 303 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~-~~~li 381 (713)
+...+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|++++|...|+.+.+. .|+... +..+.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a 359 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAA 359 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHH
Confidence 44455555566666666666666666655543 223444555555666666666666666655543 233322 22234
Q ss_pred HHHHhCCChhHHHHHHHHHHH
Q 005127 382 TALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.++...|+.++|++.|++..+
T Consensus 360 ~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 455566666666666666544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-15 Score=170.26 Aligned_cols=389 Identities=13% Similarity=0.051 Sum_probs=262.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChH
Q 005127 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (713)
Q Consensus 33 ~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (713)
+.+.+.|++++|+..|++..+.. |. ..++..+...+...|++++|+..++... +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 34557889999999999888765 43 4456666777778888888888887643 446678888888888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHHHH----------------------
Q 005127 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPNVHTY---------------------- 165 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~---------------------- 165 (713)
+|+.-|......+-..+.. ...++..+... .+........+... .|.....
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9888887665543222222 22222211111 11111111111100 0000000
Q ss_pred -----HHHHHHH------HHcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC
Q 005127 166 -----GALIDGC------AKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (713)
Q Consensus 166 -----~~li~~~------~~~g~~~~A~~l~~~m~~~g-~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p 232 (713)
..++..+ ...+++++|...|++....+ ..| +...|+.+...+...|++++|+..|++.... .|
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P 362 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DP 362 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC
Confidence 0001100 12357888888888888654 223 3456777777888888999999988887653 44
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 233 D-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (713)
Q Consensus 233 d-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 311 (713)
+ ...|..+...+...|++++|...|+...+.+ +.+..+|..+...|...|++++|+..|++..+.... +...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHH
Confidence 4 4577777888888889999999888887765 556788888888888889999999999888876543 566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CH-HHHHHHHHHHH
Q 005127 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-----TV-STMNALITALC 385 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-----~~-~~~~~li~~~~ 385 (713)
.++.+.|++++|+..++...+.. +.+..+++.+...|...|++++|.+.|++..+..-.. +. ..++..+..+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 88888899999999888887653 4457788888888888899999999888877642111 11 11222223344
Q ss_pred hCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 386 DGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
..|++++|.+++++.... .| +...+..+...+...|++++|...|++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 468888999888887764 35 4456778888888899999998888887764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-15 Score=171.38 Aligned_cols=331 Identities=11% Similarity=0.037 Sum_probs=270.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005127 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
...++..+.+.|+++.|+.+++........ +...+..++.++...|++++|.+.|+++.... +.+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 344567788999999999999999887533 34455556677778999999999999999874 3356788889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 005127 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRA 253 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A 253 (713)
.|++++|...|+++.... +.+...+..+...+...|++++|...+..+... .|+ ...+..+ ..+...|++++|
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----~P~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE----VPPRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CCCCHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999998763 445778888999999999999999999988653 233 2333333 357889999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHH
Q 005127 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQE 329 (713)
Q Consensus 254 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~----a~~~~~~ 329 (713)
...++.+.+....++...+..+...+...|++++|...|++....... +...+..+...+...|++++ |...++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999999887654444555666778899999999999999999987644 67778889999999999986 8999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005127 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (713)
Q Consensus 330 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (713)
..+.. +.+..++..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|++.|+++... .|+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~ 351 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVT 351 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc
Confidence 98864 4467899999999999999999999999998763 334667888899999999999999999999874 5665
Q ss_pred HH-HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 410 IT-YSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 410 ~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.. +..+..++...|+.++|...|++..+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44 444567889999999999999998874
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-15 Score=172.34 Aligned_cols=403 Identities=10% Similarity=0.002 Sum_probs=303.9
Q ss_pred hHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHH
Q 005127 28 QLHSYNR-LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCA 103 (713)
Q Consensus 28 ~~~~~~~-L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 103 (713)
.+.=|.. ....|+.++|++++.+..... |.....+..+...+...|++++|+.+|+.. .+.+...+..+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3334443 448999999999999998644 556666788888899999999999999983 3556777888889999
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005127 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (713)
Q Consensus 104 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (713)
..|++++|+..++.+.+.. +.+.. +..+..++...|+.++|+..++++.+... .+...+..+..++...+..+.|+.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999999873 44566 88899999999999999999999998753 356667778888999999999999
Q ss_pred HHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHhhhCCCCCCCCHH-HH----HHHHHHH
Q 005127 184 AYGIMRSKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMKAC 244 (713)
Q Consensus 184 l~~~m~~~g~~pd~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~~~~~~pd~~-~~----~~ll~~~ 244 (713)
.++.... .|+. .....++.... ..+++ ++|++.++.+.... ...|+.. .+ ...+.++
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHHH
Confidence 9987664 2321 11222222222 22234 77888888887531 1233321 11 1113345
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCH
Q 005127 245 ANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKV 320 (713)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~ 320 (713)
...|++++|...|+.+.+.+.+ |+ ..-..+...|...|++++|+.+|+++....... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6779999999999999887632 22 222335778999999999999999987654321 134566677788999999
Q ss_pred HHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 321 EAAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 321 ~~a~~~~~~m~~~g~-----------~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
++|...++.+.+... .|+ ...+..+...+...|++++|+++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 999999999887631 123 2356677888999999999999999998653 4567889999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005127 387 GDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (713)
.|++++|++.+++.... .|+ ...+......+...|++++|..+++.+++. .|+..
T Consensus 406 ~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 99999999999999874 575 556667777899999999999999999984 44443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-15 Score=168.84 Aligned_cols=357 Identities=8% Similarity=-0.057 Sum_probs=261.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHH
Q 005127 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEG 110 (713)
Q Consensus 34 ~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 110 (713)
.+.+.|++++|++.++..++.+ |.....+..+...+...|++++|+..|.... ..+......++..+.. ..
T Consensus 169 ~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~ 242 (615)
T TIGR00990 169 CHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KF 242 (615)
T ss_pred HHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HH
Confidence 4558899999999999999876 7777777778889999999999998876432 2222222222222111 11
Q ss_pred HHHHHHHHHHcCCC--CCHH------------------------------HHHHHHHH---HHHcCChhHHHHHHHHHHH
Q 005127 111 AFQVLRLVQEAGLK--ADCK------------------------------LYTTLITT---CAKSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 111 A~~l~~~m~~~g~~--pd~~------------------------------~~~~li~~---~~~~g~~~~A~~~~~~m~~ 155 (713)
+........+.... |... .+..+... ....+++++|.+.|+....
T Consensus 243 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~ 322 (615)
T TIGR00990 243 AESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALD 322 (615)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 11111111111100 0000 00001000 0123678999999999987
Q ss_pred CC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC
Q 005127 156 AG-IEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (713)
Q Consensus 156 ~g-~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd 233 (713)
.+ ..| +...|+.+...+...|++++|+..|++..... +.+...|..+...+...|++++|...|++.... -+.+
T Consensus 323 ~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~ 398 (615)
T TIGR00990 323 LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL---NSED 398 (615)
T ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC
Confidence 65 223 45678888899999999999999999998763 234668888899999999999999999998764 1334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
..++..+...|...|++++|...|+...+.+ +.+...+..+...+.+.|++++|+..|++..+.... +...+..+..+
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~ 476 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGEL 476 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 6788889999999999999999999998876 556788889999999999999999999999876432 57788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 005127 314 AGHAGKVEAAFEILQEAKNQGISVGI------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 387 (713)
+...|++++|...|+...+.....+. ..++.....+...|++++|.+++++..+.. +.+...+..+...+.+.
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQ 555 (615)
T ss_pred HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc
Confidence 99999999999999998876422111 122333334455799999999999987653 33456789999999999
Q ss_pred CChhHHHHHHHHHHHC
Q 005127 388 DQLPKTMEVLSDMKSL 403 (713)
Q Consensus 388 g~~~~A~~l~~~m~~~ 403 (713)
|++++|++.|++..+.
T Consensus 556 g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 556 GDVDEALKLFERAAEL 571 (615)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999998763
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-16 Score=160.79 Aligned_cols=389 Identities=14% Similarity=0.143 Sum_probs=321.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHH
Q 005127 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAF 112 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 112 (713)
.+..+++...+--....+.. |........+..+++..|++++|+++++.+. +..+..|..+..++...|+.+.|.
T Consensus 93 ~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~ 170 (966)
T KOG4626|consen 93 FQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAV 170 (966)
T ss_pred hcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccH
Confidence 35556666666555555554 6777777888999999999999999998754 456789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 113 QVLRLVQEAGLKADCKLY-TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 113 ~l~~~m~~~g~~pd~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
+.|...++. .|+.+.. +.+...+...|++.+|..-|.+.++... --...|+.|...+-..|+...|+.-|++..+.
T Consensus 171 ~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 171 QCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 999998875 5665543 3445555567999999999988887631 23567999999999999999999999999876
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 005127 192 NVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (713)
Q Consensus 192 g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 269 (713)
.|+ ...|-.|-..|...+.+++|...|.+.... .|+ .+++..+...|-..|.++.|...|++..+.. +.-+
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~ 320 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFP 320 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCch
Confidence 444 567888999999999999999999987643 555 5678888888999999999999999998865 3447
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
..|+.|..++-..|+..+|.+.|.+.+..... -....+.|..+|...|.++.|..+|....+.. +--....|.|...|
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIY 398 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHH
Confidence 89999999999999999999999998886443 45678889999999999999999999888753 22356789999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 005127 350 SNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 427 (713)
-+.|++++|..-|++..+. .|+ ...|+.|-..|-..|+.+.|++.+.+.+. +.|. ...++.|.+.+-.+|++.+
T Consensus 399 kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHH
Confidence 9999999999999998864 676 46899999999999999999999999887 5675 4678899999999999999
Q ss_pred HHHHHHHHHHCCCCCCH
Q 005127 428 GLMLLSQAKEDGVIPNL 444 (713)
Q Consensus 428 a~~~~~~m~~~g~~p~~ 444 (713)
|++-++...+ ++||.
T Consensus 475 AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHHHc--cCCCC
Confidence 9999999988 45664
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-14 Score=141.57 Aligned_cols=416 Identities=16% Similarity=0.190 Sum_probs=288.0
Q ss_pred CCCCCCCCCCCCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-HH------------------
Q 005127 12 PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CK------------------ 72 (713)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~-~~------------------ 72 (713)
|....+....|..+. +-...-.++.+|.+.++.-+|+.|...|+ |-...+...++++ |.
T Consensus 103 ~~F~P~~l~~~~~V~-~E~nL~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~ 180 (625)
T KOG4422|consen 103 PVFRPRHLADPLQVE-TENNLLKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMR 180 (625)
T ss_pred cccCchhcCCchhhc-chhHHHHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcc
Confidence 333333334343333 33344466789999999999999999885 3322222223222 11
Q ss_pred ----------hhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005127 73 ----------SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142 (713)
Q Consensus 73 ----------~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 142 (713)
+.|++ |- ++-+..+.+..+|..+|.+.++-...+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 181 ~~~E~S~~sWK~G~v--Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 181 NFGEDSTSSWKSGAV--AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred ccccccccccccccH--HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 11222 22 4444555677899999999999999999999999998888899999999999875543
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 005127 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AF 217 (713)
Q Consensus 143 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-A~ 217 (713)
...++..+|....+.||..|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 337899999999999999999999999999998765 46778899999999999999999999999887643 44
Q ss_pred HHHHHhhhC--CCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCC
Q 005127 218 DVLAEMNAE--VHPVD----PDHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQTGD 284 (713)
Q Consensus 218 ~~~~~m~~~--~~~~~----pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~ 284 (713)
.++.++... +..++ .|..-|.+.++.|.+..+.+.|.++...+.... +.|+ ..-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 555554332 11222 246677888999999999999999887665431 2222 2346778888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH--------
Q 005127 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NW-------- 355 (713)
Q Consensus 285 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~-------- 355 (713)
.+.....|+.|.-.-+-|+..+...++++..-.+.++-..+++..++..|...+....--++..+++.. ..
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 999999999999988889999999999999999999999999999988875555544444444444433 10
Q ss_pred H-----HHHHHHH-------HHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHH
Q 005127 356 Q-----KALELYE-------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG----LCPNTITYSILLVAC 419 (713)
Q Consensus 356 ~-----~A~~l~~-------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~ 419 (713)
. -|..+++ +|.+. .-.....+...-.+.+.|+.++|.++|.-..+.+ ..|......-++.+.
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 0 0111111 12212 2234445555666667777777777776664433 223333333455555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005127 420 ERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 420 ~~~g~~~~a~~~~~~m~~~ 438 (713)
........|..+++.|...
T Consensus 572 ~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HhcCCHHHHHHHHHHHHHc
Confidence 5666666666666666543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-13 Score=153.42 Aligned_cols=424 Identities=13% Similarity=0.121 Sum_probs=302.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHH-HHHHH--HHHHHhCCChHHH
Q 005127 36 IRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS-TFNML--MSVCASSKDSEGA 111 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~~~A 111 (713)
.+.|+++.|++.|++..+.. |.+. .++ -++.++...|+.++|+.++++...|+.. .+..+ ...+...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 38999999999999999887 5542 333 5566667779999999999987765433 33333 5578888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 112 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
+++++.+.+.. +.+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 99999999875 445677778899999999999999999999876 566666655555554566776799999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHH------HHHHHHH-----HHcCCH---HHHHHHH
Q 005127 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC-----ANAGQV---DRAREVY 257 (713)
Q Consensus 192 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~------~~ll~~~-----~~~g~~---~~A~~~~ 257 (713)
. +-+...+..+..+..+.|-...|.++..+-.. -+.+....+ ..++..- ....++ +.|+.-+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 4 44677778889999999999999988765331 111211111 1111100 012233 4455555
Q ss_pred HHHHhc--CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 258 KMIHKY--NIKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (713)
Q Consensus 258 ~~m~~~--~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 331 (713)
+.+... ..++....| --.+-++...|++.++++.|+.|...+...-..+-..+.++|...+..++|..++..+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 555542 112222222 34566788899999999999999998865444578889999999999999999999987
Q ss_pred HCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCHH-HHHHHHHHHHhCCChhH
Q 005127 332 NQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------------LKPTVS-TMNALITALCDGDQLPK 392 (713)
Q Consensus 332 ~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-------------~~p~~~-~~~~li~~~~~~g~~~~ 392 (713)
... ..++......|..+|...+++++|..+++.+.+.. ..||-. .+..++..+...|+..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 653 23355556889999999999999999999998731 122322 34456777889999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHH--HhhHHHHHHHHHHh
Q 005127 393 TMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGMC--SRRYEKARTLNEHV 468 (713)
Q Consensus 393 A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~--~r~~~~a~~l~~a~ 468 (713)
|.+.++++... .| |......+.+.+...|.+.+|++.++..... .|+... ........ ...+.+|..+.+.+
T Consensus 435 Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 435 AQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999774 45 7788888889999999999999999776653 555322 22222221 23567777766665
Q ss_pred hhccC
Q 005127 469 LSFNS 473 (713)
Q Consensus 469 ~~~~~ 473 (713)
....+
T Consensus 511 ~~~~P 515 (822)
T PRK14574 511 ISRSP 515 (822)
T ss_pred HhhCC
Confidence 55444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-13 Score=158.69 Aligned_cols=364 Identities=13% Similarity=0.091 Sum_probs=272.6
Q ss_pred HHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 005127 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (713)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 143 (713)
...+..-.|+.++|++++.... +.+...+..+...+...|++++|..+++...+.. +.+...+..+..++...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 4455667788999999988643 3556679999999999999999999999988763 44567788889999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005127 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (713)
++|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++..
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999998873 33555 8889999999999999999999999874 335666677888888899999999999866
Q ss_pred hhCCCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHHhcC
Q 005127 224 NAEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCSQTG 283 (713)
Q Consensus 224 ~~~~~~~~pd~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~-~~~----~~li~~~~~~g 283 (713)
.. .|+. .....++..+. ..+++ ++|...++.+.+. ...|+. ..+ ...+..+...|
T Consensus 177 ~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 177 NL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred CC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 43 3331 11222222222 22334 7788888888754 112221 111 11134556779
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 005127 284 DWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKAL 359 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~ 359 (713)
++++|+..|+.+.+.+.. |+.. ...+..+|...|++++|...|+.+.+..... .......|..++.+.|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987642 4432 2235778999999999999999987654211 1345667777889999999999
Q ss_pred HHHHHHHhCC-----------CCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 005127 360 ELYEHMKSIK-----------LKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDD 424 (713)
Q Consensus 360 ~l~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 424 (713)
.+++.+.+.. -.|+ ...+..+...+...|+.++|+++++++... .| +...+..+...+...|+
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 9999998642 0123 234566778889999999999999999875 45 66778888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 005127 425 VEVGLMLLSQAKEDGVIPNL 444 (713)
Q Consensus 425 ~~~a~~~~~~m~~~g~~p~~ 444 (713)
+++|++.+++..+. .|+.
T Consensus 409 ~~~A~~~l~~al~l--~Pd~ 426 (765)
T PRK10049 409 PRAAENELKKAEVL--EPRN 426 (765)
T ss_pred HHHHHHHHHHHHhh--CCCC
Confidence 99999999998874 4553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-12 Score=146.60 Aligned_cols=503 Identities=12% Similarity=0.005 Sum_probs=258.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHhCCChHHHHHH
Q 005127 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQV 114 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 114 (713)
..|++++|++.|+...+.. |.+...+..+.+++...|+.++|+..+++.. .|+...|..++..+ +++.+|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 4599999999999998877 7777788888888888899999998888754 33333333333222 777788888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH--------HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHH
Q 005127 115 LRLVQEAGLKADCKLYTTLITT--------CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-IDGCAKAGQVAKAFGAY 185 (713)
Q Consensus 115 ~~~m~~~g~~pd~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~l~ 185 (713)
++++.+.. +-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.+++++|++++
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 88887653 2233344434333 4333 33333333 2222222333333333 55666666666666666
Q ss_pred HHHHhCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHH
Q 005127 186 GIMRSKNV------------------------------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235 (713)
Q Consensus 186 ~~m~~~g~------------------------------~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~ 235 (713)
.++.+.+. +-|...+..+...|.+.|+.++|.+++.++.... .-.|+..
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~-~~~~~~~ 284 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF-TTDAQEK 284 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc-cCCCccH
Confidence 66555531 1234444445555555555555555555543211 0011111
Q ss_pred HH------------------------------HHHHHHHHHcCCHHHHHHHHHHHHh--------cCC------------
Q 005127 236 TI------------------------------GALMKACANAGQVDRAREVYKMIHK--------YNI------------ 265 (713)
Q Consensus 236 ~~------------------------------~~ll~~~~~~g~~~~A~~~~~~m~~--------~~~------------ 265 (713)
++ -.++..+.+.++++.+.++...-.. ...
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 11 1112233333333333332210000 000
Q ss_pred --------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC---HHHHHHH------
Q 005127 266 --------KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGK---VEAAFEI------ 326 (713)
Q Consensus 266 --------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~g~---~~~a~~~------ 326 (713)
+.+....-.+.-...+.|+.++|..+|+..... ...++.....-++..|.+.+. ..++..+
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 001111222222345678888999888887652 122344444466666666554 2222222
Q ss_pred ----------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 327 ----------------LQEAKNQ-GI-SV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 327 ----------------~~~m~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
....... +. ++ +...|..+..++.. ++.++|...|.+.... .|+......+...+..
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQ 521 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHH
Confidence 1111111 11 23 56667777766666 6777777766666544 4554433333444457
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--hhHHHHHH
Q 005127 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEKART 463 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~--r~~~~a~~ 463 (713)
.|++++|+..|+++... .|+...+..+..++.+.|+.++|...+++..+.. |+.. .+..+...+. .++++|..
T Consensus 522 ~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 522 VEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred CCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 78888888888776543 4554555566667777788888888887777643 3332 2222222220 23555554
Q ss_pred HHHHhhhccCCCCccccccH------------HHHHHHHHHHHHcCCCccHHHHHHHHhhcC--CCCchhHHHHHHHHcC
Q 005127 464 LNEHVLSFNSGRPQIENKWT------------SLALMVYREAIVAGTIPTVEVVSKVLGCLQ--LPYNADIRERLVENLG 529 (713)
Q Consensus 464 l~~a~~~~~~~~~~~~~~~~------------~~A~~~~~~m~~~g~~P~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~ 529 (713)
..+.....++. ...|. ..|+..|++.+. ..|+...+...++.+. .+...+....+.+.+.
T Consensus 598 ~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 598 DLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44332222221 11222 246677777665 4677766555555322 2222222233333443
Q ss_pred CCcc-cccccccccchhcccccchHHHHHHHHHHhC
Q 005127 530 VSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASF 564 (713)
Q Consensus 530 ~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~ 564 (713)
+.|+ +..+.++..++...|+.++ |...++.+.+.
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~e-A~~~l~~Al~l 706 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAA-TQHYARLVIDD 706 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHhc
Confidence 4443 2333334455566676443 66777777644
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-11 Score=142.08 Aligned_cols=452 Identities=9% Similarity=0.017 Sum_probs=227.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH--------HHhhHHHHHHHHHhhhCC-CCCHHHHHHH-HHHHHhCCC
Q 005127 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNV--------CKSQKAIKEAFRFFKLVP-NPTLSTFNML-MSVCASSKD 107 (713)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~-~~~~~~~~~l-i~~~~~~g~ 107 (713)
-+++++|..+++++.+.. |.+..+...+... +.+.+...+|+. .+... .|+....... ...|.+.++
T Consensus 121 i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 121 IPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred hccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 345555555555555443 3333333333333 333344444444 22221 2234433333 677788888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005127 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 186 (713)
+++|+.++..+.+.+ +.+..-...|..+|.. .++ +.+..++... +.-|...+..+...|.+.|+.++|..+++
T Consensus 198 w~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 198 WSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888876 3345556666667776 355 7777775532 23578888899999999999999999999
Q ss_pred HHHhCCCC-CCHHHHHHH------------------------------HHHHHhcCCHHHHHHHHH--------------
Q 005127 187 IMRSKNVK-PDRVVFNAL------------------------------ITACGQSGAVDRAFDVLA-------------- 221 (713)
Q Consensus 187 ~m~~~g~~-pd~~~~~~l------------------------------i~~~~~~g~~~~A~~~~~-------------- 221 (713)
++...-.. |...+|-.+ +..+.+.++++.+.++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAV 351 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhh
Confidence 87643211 222222211 233344444444443321
Q ss_pred ---------------HhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCC
Q 005127 222 ---------------EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTPEVYTIAINCCSQTGD 284 (713)
Q Consensus 222 ---------------~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~ 284 (713)
.|... .+-+.....-+--...+.|+.++|.++|+..... +...+....+-++..|...+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~---~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQ---EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred ccccCchhHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 11100 0011122222222345567777777777666542 122234444455566655544
Q ss_pred ---HHHHHHH----------------------HHHHHH-CCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005127 285 ---WEFACSV----------------------YDDMTK-KGV-IP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (713)
Q Consensus 285 ---~~~A~~l----------------------~~~m~~-~g~-~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 335 (713)
..++..+ ...... .+. .+ +...|..+..++.. ++.++|...+.......
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~- 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ- 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence 2233222 111111 011 12 34445555544444 56666666555555432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHH
Q 005127 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSI 414 (713)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ 414 (713)
|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|.+.|++..+.. |+ ...+..
T Consensus 507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~ 581 (987)
T PRK09782 507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWW 581 (987)
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHH
Confidence 33333333333445666666666666665433 3444445555556666666666666666666532 32 222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHHHHHhhhccCCCCcc---------ccccH
Q 005127 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI---------ENKWT 483 (713)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~---------~~~~~ 483 (713)
+...+...|++++|...+++..+ +.|+...+..+..++.+ ++++|....+.....++..+.. ..+..
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 33344455666666666666665 23454455444444433 3444444333322222221110 01122
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHhhc
Q 005127 484 SLALMVYREAIVAGTIPTVEVVSKVLGCL 512 (713)
Q Consensus 484 ~~A~~~~~~m~~~g~~P~~~~~~~~l~~~ 512 (713)
..|+..|++.++ ..|+.......++.+
T Consensus 660 eeAi~~l~~AL~--l~P~~~~a~~nLA~a 686 (987)
T PRK09782 660 AQSREMLERAHK--GLPDDPALIRQLAYV 686 (987)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 357777777766 467766544444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-11 Score=137.14 Aligned_cols=398 Identities=10% Similarity=0.048 Sum_probs=282.0
Q ss_pred HHHHHhhHHHHHHHHHhhhCC--CCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005127 68 FNVCKSQKAIKEAFRFFKLVP--NPTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (713)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 144 (713)
+-...+.|+++.|+..|++.. .|+. .....++..+...|+.++|+..+++..... .........+...|...|+++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334567789999999998765 3442 122388888889999999999999988211 223344444466888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005127 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (713)
+|+++|+++.+.... |...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999988533 5677778889999999999999999999876 5666666555555545666767999999998
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH------HHHHHHH-----HhcCC---HHHHHH
Q 005127 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------TIAINCC-----SQTGD---WEFACS 290 (713)
Q Consensus 225 ~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------~~li~~~-----~~~g~---~~~A~~ 290 (713)
.. .+.+...+..+..+..+.|-...|.++...-+..- .+....+ ..+|..- ....+ .+.|+.
T Consensus 197 ~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 197 RL---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred Hh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 64 13346677888889999999999988776544221 1111000 1111100 01122 345566
Q ss_pred HHHHHHHC-CCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 291 VYDDMTKK-GVIPDEV-----FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (713)
Q Consensus 291 l~~~m~~~-g~~p~~~-----t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 364 (713)
-++.+... +..|... ...-.+-++...|+..++++.|+.+...+.+....+--++.++|...+.+++|..+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 66665542 2224321 12234557788999999999999999998776778999999999999999999999999
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-------------CCCCHHH-HHHHHHHHHhcCCH
Q 005127 365 MKSIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-------------LCPNTIT-YSILLVACERKDDV 425 (713)
Q Consensus 365 m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~ 425 (713)
+.... ..++......|..+|...+++++|..+++++.+.- ..||-.. +..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 86542 13345556789999999999999999999998731 1233333 34456778899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHHHHHhhhccCC
Q 005127 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG 474 (713)
Q Consensus 426 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~ 474 (713)
.+|.+.++.+.... +-|......+-+++.. ...+|..+.++....++.
T Consensus 433 ~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 433 PTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 99999999998752 3355556666666553 678888887776666543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-11 Score=119.57 Aligned_cols=313 Identities=21% Similarity=0.273 Sum_probs=237.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCChhHH-HHHHHHHHHCC----------
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA--KSGKVDAM-FEVFHEMVNAG---------- 157 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~--~~g~~~~A-~~~~~~m~~~g---------- 157 (713)
.+.+=|.|+.. ..+|....+.-+++.|...|++....+-..|+..-+ ...++--| .+.|-.|.+.|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34566666664 456889999999999999998877776665554332 22222211 12333332221
Q ss_pred ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 005127 158 ---------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (713)
Q Consensus 158 ---------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (713)
.+.+..+|.+||.+.|+.-..+.|.++|++-.....+.+..+||.+|.+-.-.. ..+++.+|...
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-- 267 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ-- 267 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh--
Confidence 144678999999999999999999999999998888999999999997765432 37788899876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CC
Q 005127 229 PVDPDHITIGALMKACANAGQVDRA----REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KG 299 (713)
Q Consensus 229 ~~~pd~~~~~~ll~~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g 299 (713)
.+.||..|+|+++++.++.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 7899999999999999999988765 5677899999999999999999999999888754 4444444432 22
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005127 300 VIP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI 368 (713)
Q Consensus 300 ~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 368 (713)
++| |...|...+..|.+..+.+.|.+++.-+.... +.|+ .+-|..+....|.....+.-...|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 322 55678889999999999999999988765431 2233 245677888889999999999999999877
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH
Q 005127 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (713)
Q Consensus 369 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 410 (713)
-+-|+..+...++.+....|.++-.-+++.+|+..|..-+..
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 667888888899999999999988888888888776433333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-11 Score=131.09 Aligned_cols=428 Identities=13% Similarity=0.083 Sum_probs=283.9
Q ss_pred CCCCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCH--HH
Q 005127 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL--ST 94 (713)
Q Consensus 20 ~~~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~--~~ 94 (713)
.+++++..-.++-|.+.-.|++..++++.+.+...... +.-..-+..+++.+-..|++++|..+|-+.. .+|. ..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 45677788888889999999999999999999876521 1111224445677778899999999987643 3333 34
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
+--+...+...|+++.+...|+.+.+.. +.+..|...|...|+..+ ..+.|..+..+..+.- +.|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 4556788999999999999999998863 445667777777777764 4567777777766553 346778877777
Q ss_pred HHHHcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCCCH------HHHHH
Q 005127 171 GCAKAGQVAKAFGAYGIM----RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDH------ITIGA 239 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m----~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~pd~------~~~~~ 239 (713)
.|-...-+ .++.+|... ...+-.+.....|.+...+...|+++.|...|........ ...+|. .+--.
T Consensus 423 l~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 77654443 447766654 3455567788999999999999999999999988765310 122333 12223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005127 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 319 (713)
+...+-..++.+.|.+.|..+.+.. +.-+..|--+...--..+...+|...+.+.....-. |...++.+...+.+...
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhh
Confidence 4455566678888888888887754 222333444433333345667777777776654321 33444445555666666
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 320 VEAAFEILQEAKNQG-ISVGIISYSSLMGACSN------------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 320 ~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
+..|.+-|..+.+.- ..+|..+.-+|.+.|.. .+..++|.++|.+..+.. +.|...-|-+...++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 666666555554442 22566666666665542 234667777777776553 4566667777777788
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 005127 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~ 454 (713)
.|++.+|..+|.+.++... -+..+|..+..+|...|++-.|++.|+...+. .-.-+..+.++|-.++
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 8888888888888777532 23445667777788888888888888776653 4444555555555543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.1e-11 Score=127.99 Aligned_cols=404 Identities=13% Similarity=0.102 Sum_probs=302.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCC----Ch
Q 005127 37 RQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK----DS 108 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g----~~ 108 (713)
..|+++.|...|.+....+ +.+ ..-+.-+++.....|+++.|...|+.+. +.+..+.-.|...|+..+ ..
T Consensus 319 a~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred hhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH
Confidence 6899999999999988766 555 4445567788889999999999999764 345566667777777665 45
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005127 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM----VNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 184 (713)
+.|..++....+.- +.|...|-.+...+-.. +...++.+|... ...+-.+-....|.+...+...|++++|...
T Consensus 397 d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 67777777766653 55777888888777654 444447666554 4455567888999999999999999999999
Q ss_pred HHHHHhC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 005127 185 YGIMRSK---NVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAR 254 (713)
Q Consensus 185 ~~~m~~~---g~~pd~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~ 254 (713)
|...... -..+|. .+--.+...+-..++.+.|.+.|..+... .|. +..|--++.+....+...+|.
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke----hp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE----HPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----CchhHHHHHHhhHHHHhccCcHHHH
Confidence 9988765 122333 12223455566678999999999999875 344 233444443444457788999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHH
Q 005127 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVE 321 (713)
Q Consensus 255 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~------------~g~~~ 321 (713)
..++.....+ ..++.+++.+...|.+...+..|.+-|....+. ...+|..+.-+|...|.+ .+..+
T Consensus 551 ~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~ 629 (1018)
T KOG2002|consen 551 LLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQE 629 (1018)
T ss_pred HHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHH
Confidence 9999888876 667889999999999999999999977776553 233677777777776553 24577
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005127 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 322 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
.|+++|.++.+.. +.|...-|-+.-.++.+|++.+|..+|.+..+... .+..+|-.+..+|...|++..|+++|+.-.
T Consensus 630 KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 630 KALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998875 56888889999999999999999999999987642 345678899999999999999999998854
Q ss_pred -HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 402 -SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (713)
Q Consensus 402 -~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 451 (713)
...-.-+......|..++...|.+.++.+..-........-....+|..+
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 44444467778888899999999999999988777653333334444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-12 Score=123.88 Aligned_cols=409 Identities=13% Similarity=0.195 Sum_probs=273.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC----CCCC----HHHHHHHHHHHHhCCCh
Q 005127 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPT----LSTFNMLMSVCASSKDS 108 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~----~~~~~~li~~~~~~g~~ 108 (713)
-+.-..+|+..++-+.+...+|+.-.+...+..++.+.+.+..|+++|+.. |.-+ +...|.+.-.+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 456678888888888887777766666566677777888999999998753 3222 23455555668889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC------------CHHHHHHH-----HHH
Q 005127 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP------------NVHTYGAL-----IDG 171 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------------~~~~~~~l-----i~~ 171 (713)
+.|+..|+...+. .|+..+--.|+-++..-|+-++..+.|.+|+.....| +....|-- +.-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999988775 6787776667777777899999999999998653333 33222222 222
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCCHHH---H----------H--------HHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 005127 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV---F----------N--------ALITACGQSGAVDRAFDVLAEMNAEVH 228 (713)
Q Consensus 172 ~~~~g--~~~~A~~l~~~m~~~g~~pd~~~---~----------~--------~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (713)
.-+.+ +.++++-.-.++..--+.||-.. | . .-..-+.+.|+++.|.+++.-+.....
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22221 22233222222222222222110 0 0 112357788888888888776654321
Q ss_pred CCCCCHHHHHHHH------------------------------------HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 005127 229 PVDPDHITIGALM------------------------------------KACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (713)
Q Consensus 229 ~~~pd~~~~~~ll------------------------------------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 272 (713)
... ...-+.|. +.....|++++|.+.|++....+.......|
T Consensus 451 k~~--saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 451 KTA--SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred hhh--HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 111 01111110 0112347888888888888776533222333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (713)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 352 (713)
|. .-.+-..|+.++|++.|-++...= .-+...+.-+...|....+..+|++++.+.... ++.|+.+.+-|.+.|-+.
T Consensus 529 ni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 NI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred Hh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 33 334567889999999988765432 226667777888888889999999988776554 567889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHH
Q 005127 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-ERKDDVEVGLML 431 (713)
Q Consensus 353 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~ 431 (713)
|+-..|.+.+-+-.+. ++-|..+..-|..-|....-+++|+..|++.-- ++|+..-|..++..| .+.|++..|.++
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999998876554322 245677777777888888889999999998755 689999999888655 568999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 432 LSQAKEDGVIPNLVMFKCIIGMCSR 456 (713)
Q Consensus 432 ~~~m~~~g~~p~~~~~~~li~~~~r 456 (713)
++...+. +.-|......|+..|+.
T Consensus 683 yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhcc
Confidence 9887653 66777778888887764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-10 Score=120.93 Aligned_cols=368 Identities=13% Similarity=0.139 Sum_probs=274.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHhCC
Q 005127 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASSK 106 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g 106 (713)
.-.|.|.-.|++++|..++.+.+++. |.+..-+..++.++.+.|+.++++..+-. ..+.|...|-.+-....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 34455666799999999999999988 77888888899999999999999987653 34667789999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHHHH
Q 005127 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG----ALIDGCAKAGQVAKAF 182 (713)
Q Consensus 107 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~~A~ 182 (713)
+++.|.-.|.+.++.. +++-..+-.-...|-+.|+...|.+-|.++.....+.|..-.. .++..|...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999886 5555555566778899999999999999999875322322222 3455666777779999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------------------------CCCCCCCHHH
Q 005127 183 GAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPDHIT 236 (713)
Q Consensus 183 ~l~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------------~~~~~pd~~~ 236 (713)
+.++..... +-..+...++.++..+.+...++.|......+... +.++.++..+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 999888763 22344567888888899999999998887776551 0112223333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 237 IGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 314 (713)
+ -++-++.+....+....+.....+.++ ..+...|.-+..+|...|++.+|+++|..+......-+...|-.+..+|
T Consensus 381 ~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 I-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred H-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1 122234445555555555566666663 3456778999999999999999999999999876666788899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHh
Q 005127 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITALCD 386 (713)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~~~~p~~~~~~~li~~~~~ 386 (713)
...|..++|.+.|..+.... +.+..+--+|-..|-+.|+.++|.+.+..+.. .+..|+...--.....|.+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 99999999999999988764 44556677788889999999999999998652 2233444444445567778
Q ss_pred CCChhHHHHHHHHHHH
Q 005127 387 GDQLPKTMEVLSDMKS 402 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~ 402 (713)
.|+.++=+.+-.+|..
T Consensus 539 ~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 539 VGKREEFINTASTLVD 554 (895)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8888876666665543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-10 Score=122.39 Aligned_cols=283 Identities=13% Similarity=0.049 Sum_probs=136.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHH
Q 005127 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 182 (713)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 46666666555554433111 1222222233335566666666666666554 33332221 2244566666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH------HHHHHHHHHHHHcCCHHHHHHH
Q 005127 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (713)
Q Consensus 183 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~------~~~~~ll~~~~~~g~~~~A~~~ 256 (713)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666553 3345555566666666666666666666665431 111111 1122222222233333444444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005127 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (713)
Q Consensus 257 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 336 (713)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 4444332 1334455555555555555555555555555543 222211 11112223355555555555554442 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005127 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (713)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (713)
-|...+.++...|.+.|++++|.+.|+...+. .|+...+..|...+.+.|+.++|.+++++-
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444555555555555555555555555543 355555555555555555555555555543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-13 Score=136.90 Aligned_cols=216 Identities=18% Similarity=0.174 Sum_probs=50.8
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005127 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (713)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 218 (713)
..++.+.|.+.++++...+.. +...+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++.+
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 131 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEE 131 (280)
T ss_dssp ------------------------------------------------------------------H-HHHTT-HHHHHH
T ss_pred ccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHH
Confidence 334444444444444433211 22333333333 3444444444444333322 1233333334444444444444444
Q ss_pred HHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 219 ~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
+++..... ...+++...|..+...+.+.|+.++|.+.++...+.. +.+....+.++..+...|+.+++.+++....+.
T Consensus 132 ~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 132 LLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 44443321 1122333334444444444444444444444444332 223333444444444444444444443333332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (713)
Q Consensus 299 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 362 (713)
. ..|...+..+..+|...|+.++|...+....+.. +.|+.+...+.+++...|+.++|.++.
T Consensus 210 ~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 210 A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp --HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT------------
T ss_pred C-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 1 1122233333444444444444444444433322 223333344444444444444444433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-13 Score=135.61 Aligned_cols=257 Identities=18% Similarity=0.153 Sum_probs=86.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhCCCh
Q 005127 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDS 108 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 108 (713)
-+.+.+.|++++|+++++........|.+..+...+..++...++.+.|++.++.+.. .+...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4455677888888888855443322255556666666666777777777777776542 234455555555 566777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005127 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 187 (713)
++|.+++....+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.|++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777665544 2445556666677777777777777777765432 234566667777777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005127 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (713)
Q Consensus 188 m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 267 (713)
..+.. +-|....+.++..+...|+.+++.+++...... .+.|...+..+..+|...|+.++|...|+...+.. +.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 76652 224566666777777777777766666665543 13344456666677777777777777777766644 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 268 TPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
|+.+...+..++.+.|+.++|..+..+..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 66666677777777777777776666543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-10 Score=120.69 Aligned_cols=291 Identities=10% Similarity=-0.049 Sum_probs=176.8
Q ss_pred hhHHHHHHHHHhhhCC--CCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005127 73 SQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (713)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 149 (713)
..|+++.|.+.+.... .|+ ...+-....+..+.|+++.|.+.+....+....++..........+...|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 4566777777665543 233 2333334455666778888888887776543222222334446667777888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHhhh
Q 005127 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITAC---GQSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~ 225 (713)
++.+.+.. +-+..++..+...|.+.|++++|.+++..+.+.++.+ ...+. .-..++ ...+..+.+.+.+..+..
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88877765 2356677777778888888888888888887776432 22221 111111 222222323334443333
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005127 226 EVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (713)
Q Consensus 226 ~~~-~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 303 (713)
... ..+.+...+..+...+...|+.+.|.++++...+......... ...........++.+.+.+.++...+.... |
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~ 332 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-K 332 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-C
Confidence 200 1123666777777788888888888888887777542221111 112222233456777788888777665332 3
Q ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 304 E--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 304 ~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 45667777888888888888888854444446777778888888888888888888888753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-10 Score=119.79 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=218.2
Q ss_pred hHHHHHHHHHhhhCCCC--CHHH-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCChhHHHH
Q 005127 74 QKAIKEAFRFFKLVPNP--TLST-FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT--TLITTCAKSGKVDAMFE 148 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~--~li~~~~~~g~~~~A~~ 148 (713)
.|+++.|.+.+...+.. ++.. |-....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 48889999888876532 2333 333344558899999999999999875 55544333 44678889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLA 221 (713)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~li~~~~~~g~~~~A~~~~~ 221 (713)
.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999886 347888999999999999999999999999988654332 233444444445556667777777
Q ss_pred HhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005127 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (713)
Q Consensus 222 ~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 301 (713)
.+... .+.+......+...+...|+.++|.++++...+. ++++.. .++.+....++.+++++..+...+....
T Consensus 254 ~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 254 NQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred hCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 66542 3456778888999999999999999999988874 444422 2344445669999999999999987654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005127 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 302 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
|...+.++...|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677889999999999999999999999886 58899999999999999999999999987653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-09 Score=115.17 Aligned_cols=361 Identities=14% Similarity=0.091 Sum_probs=267.8
Q ss_pred HHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 005127 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (713)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 147 (713)
....|+.++|.+++.++. +.+...|.+|...|-+.|+.+++...+-..-... +.|...|..+.....+.|.++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 344599999999998764 5677899999999999999999988775554443 556788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHh
Q 005127 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA----LITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~----li~~~~~~g~~~~A~~~~~~m 223 (713)
-.|.+.++.. +++...+---+..|-+.|+...|..-|.++.....+.|..-+.. +++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999875 33544444557789999999999999999987743223233333 445566677779999988887
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------------------CHHHHHHHH
Q 005127 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---------------------------TPEVYTIAI 276 (713)
Q Consensus 224 ~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~---------------------------~~~~~~~li 276 (713)
... .+-..+...++.++..|.+...++.|......+..+...+ +..+. -++
T Consensus 307 ~s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ 384 (895)
T KOG2076|consen 307 LSK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLM 384 (895)
T ss_pred Hhh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHh
Confidence 663 2334556678888999999999999988887776622222 22221 222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005127 277 NCCSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (713)
Q Consensus 277 ~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 354 (713)
-++......+....+...+.... +.-+...|.-+..+|...|++..|+.+|..+......-+..+|--+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 33444444455555555555555 3335667888999999999999999999999988666678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--------LGLCPNTITYSILLVACERKDDVE 426 (713)
Q Consensus 355 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~g~~p~~~t~~~ll~a~~~~g~~~ 426 (713)
.++|.+.|+...... +-+...--.|-..|-+.|+.++|++++..|.. .+..|+..........+...|+.+
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999998652 23345556677788899999999999998642 334556655566667788888888
Q ss_pred HHHHHHHHHH
Q 005127 427 VGLMLLSQAK 436 (713)
Q Consensus 427 ~a~~~~~~m~ 436 (713)
+=..+-..|+
T Consensus 544 ~fi~t~~~Lv 553 (895)
T KOG2076|consen 544 EFINTASTLV 553 (895)
T ss_pred HHHHHHHHHH
Confidence 7555555554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-10 Score=112.32 Aligned_cols=376 Identities=15% Similarity=0.168 Sum_probs=248.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHH----HHHHHHHhhHHHHHHHHHhhhCC--CCCHHH-HHHHHHHHHhCCCh
Q 005127 36 IRQGRISECIDLLEDMERKGLLDMDKVYHA----RFFNVCKSQKAIKEAFRFFKLVP--NPTLST-FNMLMSVCASSKDS 108 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~g~~ 108 (713)
.+...+..|+..++-.+.+- .+-+..... .+.-.+.+.|.+++|+.-|+... .||..+ ||.+| .+...|+.
T Consensus 248 ~kkr~fskaikfyrmaldqv-psink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ 325 (840)
T KOG2003|consen 248 FKKREFSKAIKFYRMALDQV-PSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDA 325 (840)
T ss_pred eehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcH
Confidence 36678889999887766542 223333322 23334567899999999998753 577654 55544 44456889
Q ss_pred HHHHHHHHHHHHcCCC------------CCHHHHHHHHH-----HHHHcCC--hhHHHHHHHHHHHCCCCCCHHH-----
Q 005127 109 EGAFQVLRLVQEAGLK------------ADCKLYTTLIT-----TCAKSGK--VDAMFEVFHEMVNAGIEPNVHT----- 164 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~------------pd~~~~~~li~-----~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~----- 164 (713)
++..+.|..|+..-.. |+....+.-|. -.-+.++ -++++-.-.+++.--+.||-..
T Consensus 326 ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc 405 (840)
T KOG2003|consen 326 EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC 405 (840)
T ss_pred HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH
Confidence 9999999999864322 23333332221 1111111 1111111111111111222100
Q ss_pred --------H--------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--H---------------------
Q 005127 165 --------Y--------GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI--T--------------------- 205 (713)
Q Consensus 165 --------~--------~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li--~--------------------- 205 (713)
+ -.-..-|.+.|+++.|++++.-..+..-+.-...-+.|- .
T Consensus 406 le~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 406 LESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 0 011235788999999988888776543111111111110 0
Q ss_pred -------------HHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 005127 206 -------------ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL---MKACANAGQVDRAREVYKMIHKYNIKGTP 269 (713)
Q Consensus 206 -------------~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~l---l~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 269 (713)
....+|++++|.+.|.+.... |.....+| .-.+-..|++++|++.|-++... +..+.
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n------dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~ 558 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNA 558 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhH
Confidence 011357899999999987643 22222222 23577889999999999877543 23456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
.+...+.+.|-...++..|++++.+.... +..|...++.|...|-+.|+-.+|++.+-.--+. ++.+..+..-|...|
T Consensus 559 evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayy 636 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYY 636 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHH
Confidence 78888899999999999999999877554 3347888999999999999999999988765544 577888999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005127 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (713)
....-+++|+..|++..- ++|+..-|..||..| .+.|++.+|++++++..+. ++-|.....-|+..|...|.-
T Consensus 637 idtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 999999999999998654 389999999998655 5789999999999998765 556778888888888877753
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=7e-10 Score=118.59 Aligned_cols=290 Identities=11% Similarity=-0.005 Sum_probs=162.1
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005127 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (713)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (713)
...|+++.|.+.+....+. .|+ ...+-....++.+.|+.+.|.+.+.+..+....+.....-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3467888888887776654 333 3334444566677788888888887776543222223344456677778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHH
Q 005127 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-ALMKAC---ANAGQVDRAREVY 257 (713)
Q Consensus 182 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~-~ll~~~---~~~g~~~~A~~~~ 257 (713)
...++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+. +.. +...+. .-..++ ...+..+.+.+.+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~--~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA--GLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 88888887764 335566777777888888888888888777654 221 211121 111111 2222222222233
Q ss_pred HHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 005127 258 KMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF--AGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 258 ~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~a~~~~~~m~~ 332 (713)
..+.+.. .+.++..+..+...+...|+.++|.+++++..+.........+. ++.. ....++.+.+.+.++...+
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHH
Confidence 3333221 12356677777777777777777777777776653321111111 1111 1223555556666655554
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005127 333 QGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (713)
Q Consensus 333 ~g~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (713)
.. +-|+ ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 42 2233 4455666666666666666666663222222566666666666666666666666666653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.6e-09 Score=104.14 Aligned_cols=163 Identities=15% Similarity=0.026 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
.|+..+.+.|+-.++.++|...|++.++.+.. ....|+.+..-|....+...|.+-++...+-+ +-|-..|-.|..+|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 44444455555555555555555555544332 33444444455555555555555555554443 33444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (713)
.-.+...-|.-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......| ..+...+..+...+.+.++.++|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHH
Confidence 55555555555555544432 2344555555555555555555555555554433 223344555555555555555555
Q ss_pred HHHHHHH
Q 005127 430 MLLSQAK 436 (713)
Q Consensus 430 ~~~~~m~ 436 (713)
+.|+..+
T Consensus 487 ~~yek~v 493 (559)
T KOG1155|consen 487 QYYEKYV 493 (559)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.5e-08 Score=99.69 Aligned_cols=415 Identities=13% Similarity=0.099 Sum_probs=324.0
Q ss_pred cchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhh---hCCCCCHHHHHHHHHH
Q 005127 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMSV 101 (713)
Q Consensus 25 ~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~li~~ 101 (713)
...++.+|..-+.....++|+-++....+- .|....+...+ .+..-++.|..+++ +..+.+...|.+-...
T Consensus 376 iP~sv~LWKaAVelE~~~darilL~rAvec--cp~s~dLwlAl----arLetYenAkkvLNkaRe~iptd~~IWitaa~L 449 (913)
T KOG0495|consen 376 IPRSVRLWKAAVELEEPEDARILLERAVEC--CPQSMDLWLAL----ARLETYENAKKVLNKAREIIPTDREIWITAAKL 449 (913)
T ss_pred CCchHHHHHHHHhccChHHHHHHHHHHHHh--ccchHHHHHHH----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Confidence 456788999999988889999999998874 35544433333 33344556666654 4556788888888777
Q ss_pred HHhCCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc
Q 005127 102 CASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAKA 175 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~----m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~ 175 (713)
=-.+|+.+....+..+ +...|+..+...|-.=...|-..|.+-.+..+....+..|++- -..||+.-...|.+.
T Consensus 450 EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~ 529 (913)
T KOG0495|consen 450 EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR 529 (913)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc
Confidence 7888999988888764 4567888999999888899999999999999999988888653 245888889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005127 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (713)
Q Consensus 176 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~ 255 (713)
+.++-|..+|....+- ++.+...|......--..|..+....+|++.... ++.....|-....-+-..|++..|..
T Consensus 530 ~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 530 PAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred chHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 9999999999988876 3556778888887777889999999999988764 34455667667777888999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005127 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (713)
Q Consensus 256 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 335 (713)
++....+.. +.+..+|-+-+.....+..++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+. +
T Consensus 606 il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-f 681 (913)
T KOG0495|consen 606 ILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-F 681 (913)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-C
Confidence 999998876 557889999999999999999999999998775 456666666555566678999999999888876 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (713)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (713)
+.-...|-.+...+-+.++++.|...|..-.+. ++-.+..|-.|...--+.|.+-+|..+|++.+-.+ +-|...|...
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~ 759 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLES 759 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHH
Confidence 334567888889999999999999988765443 33445678888888888899999999999887653 3377889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (713)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 456 (713)
|..-.+.|+.+.|..+..+.++. +..+-..|..-|-+-.+
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 99999999999999888877654 33444556555555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-08 Score=102.57 Aligned_cols=289 Identities=10% Similarity=0.043 Sum_probs=176.1
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCH
Q 005127 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--PDRVVFNALITACGQSGAV 213 (713)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~li~~~~~~g~~ 213 (713)
++-.....+++..=.+.....|++-+...-+....+.-...+++.|+.+|+++.+...- -|..+|+.++-.--....+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 34444455556555556666665544444444444444556667777777766655210 1455565555222111111
Q ss_pred -HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 214 -DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (713)
Q Consensus 214 -~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (713)
--|..++. + ....|. |...+.+-|+-.++.++|...|+...+.+ +.....|+.|.+-|....+...|..-+
T Consensus 316 s~LA~~v~~-i----dKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 316 SYLAQNVSN-I----DKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHH-h----ccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 11222221 1 122332 55556666777777788888888777766 455677888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005127 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (713)
Q Consensus 293 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 372 (713)
+...+.... |-..|-.|.++|.-.+...-|+-.|++..... +.|...|.+|.++|.+.+++++|++-|......| ..
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 877776554 77777888888888888777887777776653 4567788888888888888888888887777654 33
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHH----CCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 005127 373 TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTITYS--ILLVACERKDDVEVGLMLLSQA 435 (713)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m 435 (713)
+...+..|...|-+.++.++|.+.|.+-.+ .|..-+..... -|..-+.+.+++++|..+....
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 556777778888888888888777766443 23222211111 1234445566666665544333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-08 Score=98.31 Aligned_cols=400 Identities=12% Similarity=0.089 Sum_probs=237.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHH
Q 005127 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (713)
.++.+..|..+|+..+..+ ..+..+....+..-.+++.+..|..+++... +.-...|--.+-.=-..|+...|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 3556666777777776544 2233333334444456666777777776532 1222344444444455677777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C
Q 005127 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N 192 (713)
Q Consensus 114 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g 192 (713)
+|++-.+. .||...|.+.|+.=.+.+.++.|..+|+..+-. .|++.+|---...=.++|.+..|..+|....+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 77766543 677777777777777777777777777776543 577777777666666777777777777766543 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHH
Q 005127 193 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIH 261 (713)
Q Consensus 193 ~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--~~~~~~ll~~~~~~g~~~~A~~~--------~~~m~ 261 (713)
- .-+...|++....=.++..++.|.-+|.-.... ++.+ ...|..+...--+-|+....... ++.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 0 011222333333333445566666666655542 2222 33344333333334443332222 23333
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH----H-HH---HhcCCHHHHHHHHHHHH
Q 005127 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALI----D-FA---GHAGKVEAAFEILQEAK 331 (713)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li----~-~~---~~~g~~~~a~~~~~~m~ 331 (713)
+.+ +.|-.+|--.+..-...|+.+...++|++.... +.|-. ..|..-| + +| ....+.+.+.++++..+
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333 445566777777777778888888888877654 33321 1111111 1 11 23567777888887777
Q ss_pred HCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 005127 332 NQGISVGIISYSSLMGACS----NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (713)
Q Consensus 332 ~~g~~~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (713)
+. ++-..+|+.-+--+|+ ++.++..|.+++.... |..|-..+|-..|..-.+.+.++....++++.++. .|
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~P 468 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SP 468 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--Ch
Confidence 63 3444556655555554 5677888888877655 44677888888888888888888888888888774 45
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 005127 408 -NTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIG 452 (713)
Q Consensus 408 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~ 452 (713)
|..+|......-...|+.+.|+.+|+..+.. .+......+.+.|+
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 6677777777777788888888888887764 23333444555554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-09 Score=100.66 Aligned_cols=271 Identities=11% Similarity=0.067 Sum_probs=131.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCH
Q 005127 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 178 (713)
+++.++|.++|-+|.+.. +.+..+--+|.+.|.+.|.+|.|+++++.+.+. ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 356777777777777632 223445556777777777777777777777653 332 2333455556666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005127 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (713)
Q Consensus 179 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (713)
|.|..+|..+.+.| .--......|+..|-...+|++|+++-.++... +-.+. +.-|
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~--~~q~~----~~eI----------------- 179 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL--GGQTY----RVEI----------------- 179 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc--CCccc----hhHH-----------------
Confidence 66666666666543 112334455666666666666666665554432 11111 1100
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005127 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (713)
Q Consensus 259 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 338 (713)
...|.-+...+....+.+.|..++.+..+.+.+ .+..--.+.+.....|+++.|.+.++.+.+.+...-
T Consensus 180 ----------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 180 ----------AQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred ----------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 112333333344444444444444444443222 112222233344445555555555555555443333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (713)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 418 (713)
..+...|..+|...|+.++....+..+.+. .++...-+.|-..-....-.+.|...+.+-... +|+...|..++..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 444555555555555555555555554443 222222223333222233333444433333321 4555555555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-10 Score=117.70 Aligned_cols=282 Identities=14% Similarity=0.078 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 005127 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAV-DRAFDV 219 (713)
Q Consensus 143 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~~~~~li~~~~~~g~~-~~A~~~ 219 (713)
..+|...|..+...- .-...+..-+..+|...+++++|.++|+.+++.. .--+...|.+.+--+-+.-.+ --|..+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 356666666644431 1123444555666666666666666666665541 112345555555333221111 112222
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 220 ~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 299 (713)
.+.. +-...+|.++.++|.-.++.+.|.+.|+...+.+ +....+|+.+..-+.....+|.|...|+..+...
T Consensus 414 i~~~-------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 414 IDTD-------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HhhC-------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 2211 1224466666666666677777777776666654 3345666666666666666777777776665543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005127 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (713)
Q Consensus 300 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 379 (713)
.. +-..|..+.-.|.+.++++.|.--|+.+.+-+ +.+.+....+...+-+.|+.++|+++|++..... +.|+..---
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 22 33344455566667777777777776666654 3345556666666667777777777777666443 234444444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.+..+...+++++|++.++++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55566666777777777777766 35543 44555566777777777777766666653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-07 Score=92.94 Aligned_cols=341 Identities=16% Similarity=0.122 Sum_probs=177.8
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHcCC
Q 005127 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE----MVNAGIEPNVHTYGALIDGCAKAGQ 177 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~li~~~~~~g~ 177 (713)
+++...++.|..++....+. ++.+...|.+-...=-..|+.+...++.++ +...|+..+...|-.=...|-..|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 33444455566666555543 344555555555444555555555555544 2334555565556555555555565
Q ss_pred HHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005127 178 VAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (713)
Q Consensus 178 ~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~ 255 (713)
.--+..+....+.-|+.-. ..||+.-...|.+.+.++-|..+|....+. ++.+...|......--..|..+....
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 5555555555554444322 345555555566666666666666555432 23334445444444444555666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005127 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (713)
Q Consensus 256 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 335 (713)
+|++....- +-....|-....-+-..|+...|..++.+..+.... +...|-+-+..-.....++.|..+|.+....
T Consensus 572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 665555432 333445555555555556666666666665554433 4455555555555566666666666555443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHH
Q 005127 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYS 413 (713)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 413 (713)
.++..+|.--+...--.++.++|.+++++..+. .|+- ..|-.+-..+-+.++.+.|.+.|..-.+ ..|+ ...|.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWl 723 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWL 723 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHH
Confidence 244444444444444455566666666555543 3442 3455555555566666666655544333 2333 33444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
.+...-.+.|.+-.|+.++++..-.+ .-+...|-..|.+=.
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHH
Confidence 44445555556666666665554432 223444555554433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-08 Score=100.98 Aligned_cols=286 Identities=16% Similarity=0.128 Sum_probs=204.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005127 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 184 (713)
.|++..|+.+..+-.+.+- -....|..-..+.-..|+.+.+-.++.+.-+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5889999988888777763 334566667777788889999999988888764466677777888888888998888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHH
Q 005127 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (713)
Q Consensus 185 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-------~~~~~~ll~~~~~~g~~~~A~~~~ 257 (713)
.+++.+.+ +.+.........+|.+.|++.....++..+.+. +.-.| ..+|..+++-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka--~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKA--GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc--cCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88888775 446777788888999999999999998888775 33322 235666666555555555555566
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005127 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (713)
Q Consensus 258 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 337 (713)
+..+.. .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...++ .+.+.++...-.+..+.-.+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC-CC
Confidence 555443 244566777777788888888888888888877776655 22222 3445566655555555544432 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
++-.+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..+|.+.|+..+|.+++++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4467777888888888888888888866554 67888888888888888888888888777553
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-08 Score=97.01 Aligned_cols=273 Identities=16% Similarity=0.162 Sum_probs=183.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 005127 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDR 252 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--~~~~~~ll~~~~~~g~~~~ 252 (713)
+++.++|.++|-+|.+.. +.+..+--+|-+.|-+.|..|.|+.+++.+... .+...+ ..+...|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 345556666666665431 112223334555566666666666666655432 111111 2233445566777788888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQ 328 (713)
Q Consensus 253 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~ 328 (713)
|+.+|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888887777644 223456677888888889999999998888887766543 357778888888899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005127 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (713)
Q Consensus 329 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (713)
+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++.+..+.++.+.. ++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 998875 334555566778899999999999999999987433334567889999999999999999999988753 33
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
...-..+..--....-.+.|..++.+-++ -.|+...+..||+.-.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHL 326 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhh
Confidence 33333333333334445566666554444 3699999999998643
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=7e-12 Score=89.58 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (713)
Q Consensus 372 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (713)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-09 Score=114.29 Aligned_cols=198 Identities=12% Similarity=0.043 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 005127 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (713)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 275 (713)
+.+|.++...|.-.++.+.|++.|++..+ +.| ..++|+.+..-+.....+|.|...|+.....+ +.+-..|.-+
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGl 495 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGL 495 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhh
Confidence 44444444444444445555554444432 223 34444444444444444444444444443322 1111222233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005127 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (713)
Q Consensus 276 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 355 (713)
.-.|.+.++++.|+-.|++..+.+.. +.+....+...+.+.|+.++|+++++++..... .|+..--.-...+...++.
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcch
Confidence 44444444455554444444444333 344444444444444444555554444444331 1222222223333344444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 356 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
++|...++++++.- +.+...|-.+...|.+.|+.+.|+.-|.-|.+
T Consensus 574 ~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 574 VEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 44554444444331 11233344444444444444444444444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-08 Score=99.84 Aligned_cols=384 Identities=12% Similarity=0.100 Sum_probs=220.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCC-HHHHHHHHHHHHhCCChHH
Q 005127 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEG 110 (713)
Q Consensus 34 ~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~ 110 (713)
...++|++++|++.+.+.++.. |+..+++......+...|++++..+..-... +|+ +-.+..-.+++-..|++++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 3447899999999999998865 6656777777777888888888888766544 233 3345555566667777777
Q ss_pred HHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHHc-----------
Q 005127 111 AFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-AG--IEPNVHTYGALIDGCAKA----------- 175 (713)
Q Consensus 111 A~~l~~~m~-~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g--~~~~~~~~~~li~~~~~~----------- 175 (713)
|+.=..-.. -.|+. |..+--.+=+.+- ..|.+...+-.+ .+ +-|+....++..+.+...
T Consensus 202 al~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 202 ALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred HHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 653222111 11111 1100000000000 111111111111 11 224433333333322110
Q ss_pred --------------C---CHHHHHHHHHHHHh---CCCCC---CH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 005127 176 --------------G---QVAKAFGAYGIMRS---KNVKP---DR------VVFNALITACGQSGAVDRAFDVLAEMNAE 226 (713)
Q Consensus 176 --------------g---~~~~A~~l~~~m~~---~g~~p---d~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (713)
+ .+.+|...+.+-.. ..... |. .+...-...+.-.|+.-.|.+-|+.....
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 0 12222222221110 00000 11 11111111223356777777777776643
Q ss_pred CCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005127 227 VHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (713)
Q Consensus 227 ~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 305 (713)
.|. ...|--+..+|....+.++....|....+.+ +.++.+|..-...+.-.+++++|..=|++....... +..
T Consensus 356 ----~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~ 429 (606)
T KOG0547|consen 356 ----DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAY 429 (606)
T ss_pred ----CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhH
Confidence 222 2226666667888888888888888887776 556677777777777778888888888887776443 445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------H--HH
Q 005127 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-------V--ST 376 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-------~--~~ 376 (713)
.|.-+--+..+.++++++...|++.+++ ++..+.+|+-....+...++++.|.+.|+...+. .|+ . ..
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhh
Confidence 5555555556777888888888887766 4556778888888888888888888888877654 222 1 11
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
--+++..- =.+++..|++++++..+. .| ....|.+|...-.+.|+.++|+++|+....
T Consensus 507 ~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 507 HKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11111111 237788888888887763 44 456777888888888888888888876553
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-06 Score=88.45 Aligned_cols=359 Identities=15% Similarity=0.116 Sum_probs=267.3
Q ss_pred HHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 005127 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (713)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 147 (713)
-.+++++..|..+|+... ..++..|--.+..=.++.....|..++++.+..-...|. .|-.-+.+=-..|++.-|.
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHH
Confidence 345788889999999765 467778888888889999999999999999875323233 4444555566779999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 005127 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (713)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (713)
++|+.-.+- .|+...|++.|+.=.+.+.++.|..+|++.+-. .|++.+|---...=-++|....|.++|......-
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999998875 899999999999999999999999999999854 7999999988888889999999999999876531
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH--------HHHHHHC
Q 005127 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQTGDWEFACSV--------YDDMTKK 298 (713)
Q Consensus 228 ~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l--------~~~m~~~ 298 (713)
..-.-+...+.+...--.++..++.|.-+|+-..+.-... ....|..+...--+-|+....... |+.+.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1111223345555555566788999999998877653221 145566666665666665443333 3445555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH--------HHHhcCCHHHHHHHHHHHHhC
Q 005127 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI--ISYSSLMG--------ACSNAKNWQKALELYEHMKSI 368 (713)
Q Consensus 299 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~ 368 (713)
+.. |-.+|--.+..-...|+.+...++|+..+.. ++|-. ..|...|. .-....+++.+.++|+...+.
T Consensus 318 np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 NPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred CCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 433 6677777888778889999999999998876 34421 12222221 113578899999999988873
Q ss_pred CCCCCHHHHHHHHHHH----HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 369 KLKPTVSTMNALITAL----CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (713)
Q Consensus 369 ~~~p~~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 439 (713)
++....||.-+--.| .++.+...|.+++...+ |..|-..+|...|..-.+.+.++..+.+++..++.+
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 233455655544444 46788999999998776 578999999999999999999999999999999853
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.6e-09 Score=113.65 Aligned_cols=249 Identities=16% Similarity=0.148 Sum_probs=145.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005127 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (713)
Q Consensus 116 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 195 (713)
..+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-...+-+...++.++.+...+++.+.+. .|
T Consensus 14 a~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep 81 (1088)
T KOG4318|consen 14 ALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EP 81 (1088)
T ss_pred HHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CC
Confidence 34444455555555555555555555555444 4444444444444444555555444444444333 34
Q ss_pred CHHHHHHHHHHHHhcCCHH-----------------------HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005127 196 DRVVFNALITACGQSGAVD-----------------------RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (713)
Q Consensus 196 d~~~~~~li~~~~~~g~~~-----------------------~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~ 252 (713)
-..||..|..+|...||+. ....++..+... .+.-||..+ ++....-.|-++.
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~-p~~lpda~n---~illlv~eglwaq 157 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC-PHSLPDAEN---AILLLVLEGLWAQ 157 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC-cccchhHHH---HHHHHHHHHHHHH
Confidence 4445555555555554432 222222222111 233344332 3333455566666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (713)
Q Consensus 253 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 331 (713)
+.+++..++...... +... ++.-+.... .+++-...-....+ .|+..+|..++.+...+|+.+.|..++.+|+
T Consensus 158 llkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 666665554432111 1111 133222222 22332222222222 5899999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 005127 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (713)
Q Consensus 332 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 389 (713)
+.|++.+..-|..|+-+ .++..-+..+.+.|.+.|+.|+..|+...+..+.++|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999998888888765 78888889999999999999999999988888877665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-11 Score=86.26 Aligned_cols=50 Identities=36% Similarity=0.658 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (713)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 209 (713)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-07 Score=95.59 Aligned_cols=407 Identities=17% Similarity=0.196 Sum_probs=216.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 005127 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 114 (713)
|+++|++..-...|+..++.-.+.....+.-..+++..+.+-.+-++++++.-..-++..-+-.|..++..+++++|-+.
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~ 191 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQR 191 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHH
Confidence 44788888888888887776544444455555666666666666677776655444444455666666666777666666
Q ss_pred HHHHHHcC------CCCCH--------------------------------------HHHHHHHHHHHHcCChhHHHHHH
Q 005127 115 LRLVQEAG------LKADC--------------------------------------KLYTTLITTCAKSGKVDAMFEVF 150 (713)
Q Consensus 115 ~~~m~~~g------~~pd~--------------------------------------~~~~~li~~~~~~g~~~~A~~~~ 150 (713)
+...+... .+.+. ..|++|.+-|.+.|.++.|..+|
T Consensus 192 la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 192 LATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 65543210 11222 24555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHHHHhCC-----------CCCCH
Q 005127 151 HEMVNAGIEPNVHTYGALIDGCAKAGQ----------------------VAKAFGAYGIMRSKN-----------VKPDR 197 (713)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~----------------------~~~A~~l~~~m~~~g-----------~~pd~ 197 (713)
++.... ...+.-|+.+.++|++... ++-.+.-|+.+.... -+-++
T Consensus 272 eeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 272 EEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 554443 2233334444444443211 111111222221110 00011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---
Q 005127 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--- 268 (713)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~--- 268 (713)
..|..-. -...|+..+-...|.+.... +.|- ...|..+.+.|-..|+++.|..+|++..+...+.-
T Consensus 350 ~eW~kRV--~l~e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 350 EEWHKRV--KLYEGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred HHHHhhh--hhhcCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 1111111 11123344445555554432 2221 23466677777788888888888887766554322
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----------P-------DEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (713)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p-------~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 331 (713)
..+|..-...-.+..+++.|+++.++.....-. | +...|+..++.-...|-++....+++.+.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345555566666777777777777665432111 1 22345555555555677777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCC
Q 005127 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCD---GDQLPKTMEVLSDMKSLGLCP 407 (713)
Q Consensus 332 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p 407 (713)
+..+.....+.|- .-.+-....++++.++|++-...--.|++ ..||..+.-+.+ .-..+.|..+|++..+ |++|
T Consensus 505 dLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 505 DLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 6654322222221 11233445577777777765544334554 467776655543 3457888888888877 6666
Q ss_pred CHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 005127 408 NTITYSILL--VACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCII 451 (713)
Q Consensus 408 ~~~t~~~ll--~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li 451 (713)
...-+.-|+ ..-...|....|+.++++... ++.+. ..+||..|
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 543322222 222345777778888877543 23332 33455555
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-10 Score=119.86 Aligned_cols=254 Identities=17% Similarity=0.157 Sum_probs=184.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 005127 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (713)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (713)
.++..+...|+.||.+||..+|.-||..|+++.|- +|.-|.-+..+.+...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 9999988888888999999999999988876543
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCCHHHH---------------HHHHHHHHhcCCH
Q 005127 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-------YNIKGTPEVY---------------TIAINCCSQTGDW 285 (713)
Q Consensus 228 ~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~---------------~~li~~~~~~g~~ 285 (713)
.|...||..|+.+|...||+..-..+-+.+.. .|+. ....| ...+.-..-.|.+
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 56677999999999999997652222222221 1211 11111 1233334445666
Q ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 286 EFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (713)
Q Consensus 286 ~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 364 (713)
+.+++++..|....- .|-.+ +++-+..... -..++........-.|++.+|.++++.-...|+++.|..++.+
T Consensus 156 aqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 666666665543321 12212 2333332222 2233333322221258999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005127 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (713)
Q Consensus 365 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (713)
|++.|++-+..-|-.|+.+ .+...-+..+++.|.+.|+.|+..|+...+..|...|..
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 9999999998888888877 788888889999999999999999999888888775543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-08 Score=99.74 Aligned_cols=197 Identities=16% Similarity=0.112 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (713)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 207 (713)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344555555555566666666555555432 2234455555555555555655655555555442 22344444555555
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
...|++++|.+.+.+..... ........+..+...+...|++++|...|....+.. +.+...+..+...+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554320 111122233334444455555555555555444432 2233344444444444555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (713)
Q Consensus 288 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 329 (713)
|...+++.... ...+...+..+...+...|+.+.|..+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55554444433 112233333344444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-08 Score=113.40 Aligned_cols=249 Identities=12% Similarity=0.011 Sum_probs=175.3
Q ss_pred hHHHHHHHHHhhhCC--CC-CHHHHHHHHHHHH---------hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005127 74 QKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 141 (713)
.+..++|+.+|++.. .| +...|..+..++. ..+++++|...+++..+.. +.+..++..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456788999988754 33 4556665554433 2345789999999998875 456778888888899999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (713)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 221 (713)
++++|...|++..+.. +.+...+..+...|...|++++|+..+++..+.... +...+..++..+...|++++|...+.
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999998875 335677888889999999999999999999887422 23333444555667899999999998
Q ss_pred HhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 005127 222 EMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-G 299 (713)
Q Consensus 222 ~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g 299 (713)
+.... ..|+ ...+..+..++...|++++|...+..+.... +.+....+.+...|...| +.|...++.+.+. .
T Consensus 431 ~~l~~---~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 431 ELRSQ---HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHh---ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 87653 1243 4456677788889999999999998875543 334455667777777777 4788877776553 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (713)
Q Consensus 300 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 334 (713)
..|....+..+ .|.-.|+-+.+... +++.+.+
T Consensus 505 ~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 22222333333 34445666666655 7777664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-07 Score=93.38 Aligned_cols=287 Identities=13% Similarity=0.066 Sum_probs=226.1
Q ss_pred hHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005127 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 150 (713)
.|++..|.++..+.. +.....|-.-..+.-+.|+.+.+-..+.+.-+.--.++...+-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 478888888876532 23344555556677788999999999999887643566777888888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005127 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~li~~~~~~g~~~~A~~~~~~m 223 (713)
+.+.+.+ +.+........++|.+.|++.....+...|.+.|.-.|. .+|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9988876 447788999999999999999999999999999876654 45777887777777777766677666
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC
Q 005127 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIP 302 (713)
Q Consensus 224 ~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p 302 (713)
... ...+...-.+++.-+.++|+.++|.++..+..+++..++.. ..-.+.+-++.+.-++..++-.+. +..
T Consensus 256 pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~- 327 (400)
T COG3071 256 PRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED- 327 (400)
T ss_pred cHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC-
Confidence 542 34556677788889999999999999999998887766521 223456677887777777775554 444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005127 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (713)
Q Consensus 303 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 372 (713)
...+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+++++....-.+|
T Consensus 328 -p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 -PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred -hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 478899999999999999999999977765 6899999999999999999999999998876433333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-08 Score=97.99 Aligned_cols=200 Identities=14% Similarity=0.056 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
...+..+...|...|++++|...++...+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555566666666666666666655543 334555666666666666666666666666555332 34455556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH
Q 005127 314 AGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 392 (713)
+...|++++|...+....+... ......+..+...|...|++++|...|++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666655321 2233455556666777777777777777766542 2245566667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
|.+.+++..+. .+.+...+..+...+...|+.+++..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777776664 233455555666666677777777776665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-07 Score=96.39 Aligned_cols=284 Identities=10% Similarity=0.071 Sum_probs=223.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHH
Q 005127 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (713)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~ 237 (713)
..-|......-.+-+-..+++.+..++++...+.. +++...+..=|..+...|+..+-..+=.++... .+....+|
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~---yP~~a~sW 315 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL---YPSKALSW 315 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCCcch
Confidence 34466666666777788899999999999998774 566677777777888888887777666666642 34557899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHH
Q 005127 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GV-IPDEVFLSALIDFA 314 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~-~p~~~t~~~li~~~ 314 (713)
-++.--|.-.|+..+|++.|.+....+ +.-...|-.+...|+-.|..++|...+...-+. |. .| ..| +.--|
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LY--lgmey 390 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLY--LGMEY 390 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHH--HHHHH
Confidence 999988999999999999999876654 222468999999999999999999988776553 32 22 222 33347
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHhCC
Q 005127 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI--KLK----PTVSTMNALITALCDGD 388 (713)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~----p~~~~~~~li~~~~~~g 388 (713)
.+.+.++.|.+.|.+..... +.|+.+++-+.-...+.+.+.+|...|+..... .+. .-..+++.|..+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 88999999999999888763 668889999988888999999999999987621 011 13456888999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (713)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (713)
.+++|+..|++.+.. .+-|..|++++.-.+...|+++.|.+.|.+..- +.|+..+...++..+
T Consensus 470 ~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 999999999998874 234788999999999999999999999987764 789988888887654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-08 Score=107.87 Aligned_cols=231 Identities=10% Similarity=0.043 Sum_probs=141.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 005127 212 AVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACA---------NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (713)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 281 (713)
++++|.++|++.... .|+ ...|..+..+|. ..+++++|...+++..+.+ +.+...+..+...+..
T Consensus 276 ~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 276 SLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 356777777777643 443 334444444333 2234677888887777765 5566777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005127 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (713)
Q Consensus 282 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 361 (713)
.|++++|...|++..+.+.. +...+..+..++...|++++|...++...+.... +...+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence 88888888888887776543 4556667777777788888888888877776422 222333344445667778888888
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC-
Q 005127 362 YEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI-LLVACERKDDVEVGLMLLSQAKED- 438 (713)
Q Consensus 362 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~m~~~- 438 (713)
+++..+.. .| +...+..+...|...|+.++|.+.+.++... .|+..+... +...+...| +.+...++.+.+.
T Consensus 429 ~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 429 GDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 77776442 23 3445666677777788888888887776543 454444333 334445555 4666666665543
Q ss_pred CCCCCHHHHHHHHHHH
Q 005127 439 GVIPNLVMFKCIIGMC 454 (713)
Q Consensus 439 g~~p~~~~~~~li~~~ 454 (713)
...|......+++..+
T Consensus 504 ~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 504 QRIDNNPGLLPLVLVA 519 (553)
T ss_pred hHhhcCchHHHHHHHH
Confidence 3333333334444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-08 Score=95.10 Aligned_cols=228 Identities=14% Similarity=0.083 Sum_probs=129.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHH-HHHHHHHH
Q 005127 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKAC 244 (713)
Q Consensus 166 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~-~~~ll~~~ 244 (713)
+.|.++|.+.|.+.+|.+-|+.-... .|-+.||-.|-++|.+..+...|+.+|.+-... .|-.+| ..-+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhHHHH
Confidence 45666666666666666666665554 445556666666666666666666666655432 233333 23344555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (713)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 324 (713)
-..++.++|.++|+...+.. +.++.....+...|.-.++++.|+..|+++++.|+. +...|..+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 56666666666666665544 334455555555566666666666666666666665 5555666666666666666666
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 325 EILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 325 ~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.-|.+....--.|+ ..+|-.|-......|++..|.+-|+-..... ..+...+|.|.-.-.+.|+.++|..+++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66665554332222 2345555555555666666666666554432 22345555555555566666666666655543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.9e-07 Score=92.78 Aligned_cols=284 Identities=15% Similarity=0.090 Sum_probs=219.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005127 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (713)
Q Consensus 123 ~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 202 (713)
..-+........+-|...+++.+..++++...+.. +++...+..-|.++...|+..+-+.+=.+|.+. .+-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 44566666677777888899999999999988764 456667777778888999888888887888776 3556789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHH
Q 005127 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCS 280 (713)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~ 280 (713)
+.--|...|+..+|.+.|.....- .|. ...|-.....|+-.|..|.|...+...-+.-.. .-+..|.. --|.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~l----D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg--mey~ 391 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTL----DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG--MEYM 391 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhc----CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH--HHHH
Confidence 998888889999999999887543 333 347778888899999999999888766543111 11233433 3477
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCC
Q 005127 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS--VGIISYSSLMGACSNAKN 354 (713)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~~~~~~~~li~~~~~~g~ 354 (713)
+.+..+.|.+.|.+.....+. |+...+-+.-.....+.+.+|...|+..... +-. .-..+++.|..+|.+++.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 788999999999988766443 6667777766677788999999999877622 101 124568999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (713)
Q Consensus 355 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 418 (713)
+++|+..|++..... +.|..++.++.-.|...|+++.|.+.|.+..- +.||..+-+.+|..
T Consensus 471 ~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 999999999987654 66889999999999999999999999999875 78999888887763
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-05 Score=82.12 Aligned_cols=416 Identities=16% Similarity=0.141 Sum_probs=237.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHH--HHHH--
Q 005127 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML--MSVC-- 102 (713)
Q Consensus 28 ~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l--i~~~-- 102 (713)
-....|...++|.+++|.+...+++..+ |++ ..+|..++ ...+.+.+++|+.+.+.-.. ..+++.. =.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvV-alIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVV-ALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHh-hhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHH
Confidence 3444567779999999999999999876 444 33444333 34567889999977665331 1222222 3444
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005127 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (713)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (713)
.+.+..++|+..+. |..++ ..+...-...+.+.+++++|+++|+.+.+.+.+ .+...+.+-+.. ...+
T Consensus 90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a--~~a~ 158 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLA--VAAA 158 (652)
T ss_pred HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHH--HHHh
Confidence 46788999998887 33333 346666677788999999999999999776422 122222111100 0001
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHhhh--------CCCC---CCCCHH-HHHHHHHHHHH
Q 005127 182 FGAYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDHI-TIGALMKACAN 246 (713)
Q Consensus 182 ~~l~~~m~~~g~~pd~~~~~~li---~~~~~~g~~~~A~~~~~~m~~--------~~~~---~~pd~~-~~~~ll~~~~~ 246 (713)
... +.|......| ..+|..+. ..+...|++.+|++++..... ...+ +..+.. .-.-|.-++-.
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 0122222222 22333332 345567888888888776611 1000 000111 11223345667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcC----------------------------------------
Q 005127 247 AGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTG---------------------------------------- 283 (713)
Q Consensus 247 ~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g---------------------------------------- 283 (713)
.|+-++|..++..+.+.+....+ ..-|.++..-....
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888877776633221 11222222111111
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 284 -----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (713)
Q Consensus 284 -----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 356 (713)
..+.+.++-... .+-.|. ..+..++..+.+. .....+.+++...-+....-...+.-.++......|+++
T Consensus 317 ~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 011111111111 112232 3444555444332 235566666666655543333567777788889999999
Q ss_pred HHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC--CCCCCHHHHHHH----HHHHHhc
Q 005127 357 KALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSIL----LVACERK 422 (713)
Q Consensus 357 ~A~~l~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~l----l~a~~~~ 422 (713)
.|.+++. .+.+.+..|-. ..++...|.+.++.+-|..++.+.... .-.+......++ ...-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 66665555554 445667777777777787777776531 112222333333 3334567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-hHHHHHHHHHH
Q 005127 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEH 467 (713)
Q Consensus 423 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r-~~~~a~~l~~a 467 (713)
|+-++|...++++.+.. .+|..+..++|.+|++ ..++|..+...
T Consensus 472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~eka~~l~k~ 516 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDPEKAESLSKK 516 (652)
T ss_pred CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCHHHHHHHhhc
Confidence 99999999999999853 5788899999999988 66777766654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-05 Score=80.68 Aligned_cols=389 Identities=13% Similarity=0.116 Sum_probs=192.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHH
Q 005127 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (713)
..+++..-+.+.+.+.+.- |......++.+-.....|+.++|........ ..+.+.|..+.-.+....++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 4566666666666666532 3333333333333334455666666655433 2345666666666666667777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Q 005127 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN- 192 (713)
Q Consensus 114 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 192 (713)
.|+.....+ +.|...+.-+--.-++.++++-.......+.+.. +.....|..+..++.-.|+...|..+.++..+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777666654 3345555555444455566666655555555442 2234456666666666666666666666665543
Q ss_pred CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005127 193 VKPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (713)
Q Consensus 193 ~~pd~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 266 (713)
-.|+...|.-.. ....+.|..++|.+.+..-.. .+......--+-...+.+.+++++|..++..+..++ +
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-P 250 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-P 250 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-c
Confidence 234444443222 223445666666665554322 111112222233455666666666666666666654 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH-HHHH----------------------------------HHHHCCCCCCHHHHHHHH
Q 005127 267 GTPEVYTIAINCCSQTGDWEFAC-SVYD----------------------------------DMTKKGVIPDEVFLSALI 311 (713)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~-~l~~----------------------------------~m~~~g~~p~~~t~~~li 311 (713)
.+..-|-.+..++.+-.+.-+++ .+|. .+.+.|+.+ ++..+.
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 22333333333333222222222 3333 334444432 233333
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005127 312 DFAGHAGKVEAAFEILQEAKN----QG----------ISVGIIS--YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~----~g----------~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 375 (713)
..|-.....+-..++.-.+.. .| -+|.... +-.++..|-+.|+++.|....+....+ .|+.+
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH
Confidence 333222211111111111111 00 0233332 234455566666666676666666654 45432
Q ss_pred -HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 376 -TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (713)
Q Consensus 376 -~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 439 (713)
.|..-.+.+...|.+++|...+++..+.+ .||...=+--..-..++.++++|.++....-+.|
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 34444455666666777766666666543 3444333333344455666666666666665554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-06 Score=92.44 Aligned_cols=289 Identities=13% Similarity=0.130 Sum_probs=165.1
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhc---
Q 005127 136 TCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITACGQS--- 210 (713)
Q Consensus 136 ~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~-~li~~~~~~--- 210 (713)
.+...|++++|++.++.-.+. -+| ..........+.+.|+.++|..+|..+.+.+ |+...|. .+..+.+-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 345556666666666554333 223 3334455556666666666666666666653 3333333 333333111
Q ss_pred --CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 211 --GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 211 --g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
.+.+...++|+++... -|-......+.-.+..-..+ ..+...+..+...|++ .+++.+-..|......+-
T Consensus 89 ~~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 2345556666665432 12222221111111111112 2344445556666654 566666666665555555
Q ss_pred HHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 288 ACSVYDDMTKK----G----------VIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 288 A~~l~~~m~~~----g----------~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
...++...... + -.|.. .++..+...|-..|++++|++.++..++.. +..+..|..-...|-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 55555554322 1 12333 344556677778888888888888887764 2236677777888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHHhcC
Q 005127 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT------Y--SILLVACERKD 423 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t------~--~~ll~a~~~~g 423 (713)
.|++.+|.+.++...+.. .-|...-+-.+..+.++|+.++|.+++....+.+..|-... | .-...+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888877654 23555555566777788888888888887776654442211 1 23347788888
Q ss_pred CHHHHHHHHHHHHH
Q 005127 424 DVEVGLMLLSQAKE 437 (713)
Q Consensus 424 ~~~~a~~~~~~m~~ 437 (713)
++..|++-|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888877766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9e-07 Score=94.15 Aligned_cols=241 Identities=20% Similarity=0.168 Sum_probs=136.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhCC---C-CCCCC-H
Q 005127 167 ALIDGCAKAGQVAKAFGAYGIMRSK-----N-VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEV---H-PVDPD-H 234 (713)
Q Consensus 167 ~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~---~-~~~pd-~ 234 (713)
.|..+|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++.... . ...|. .
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3445555555555555555444322 1 1222222 2235556667777777777776664310 1 11222 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 005127 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-VFLSALIDF 313 (713)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~ 313 (713)
.+++.|...|.+.|++++|...++...+ ++++.... ..|.. .-++.+...
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~-~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGA-SHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhcc-ChHHHHHHHHHHHHH
Confidence 4566667778888888888776654332 22221000 00111 123334444
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHH
Q 005127 314 AGHAGKVEAAFEILQEAKNQ-----GI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLK--P-TVSTMNA 379 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~-----g~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~--p-~~~~~~~ 379 (713)
|+..+++++|..+++...+. |. ..-..+++.|...|.+.|++++|.++|++.... +.. + ....++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 45555555555554443221 10 112357788888888888888888888876532 111 1 2346777
Q ss_pred HHHHHHhCCChhHHHHHHHHHH----HCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 380 LITALCDGDQLPKTMEVLSDMK----SLGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~----~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
|...|.+.+++.+|.++|.+.. ..|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8888888888888888887743 3231 233 3678889999999999999999887765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.4e-08 Score=93.93 Aligned_cols=233 Identities=13% Similarity=0.078 Sum_probs=195.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHH
Q 005127 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITACG 208 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~-~li~~~~ 208 (713)
-+.+..+|.+.|.+.+|.+-|+.-.+. .|-+.||-.|-+.|.+..+++.|+.+|.+-.+. .|-.+||. -+.+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 367889999999999999999998877 677888999999999999999999999998876 56666664 4667788
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (713)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (713)
..++.++|.++++...+. -+.++.....+...|.-.++++-|.+.|+.+.+.|+ .++..|+.+.-+|.-.+++|.+
T Consensus 302 am~~~~~a~~lYk~vlk~---~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKL---HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHhHHHHHHHHHHHHhc---CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhh
Confidence 889999999999998764 134555666777788889999999999999999995 5788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 289 CSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 289 ~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
+.-|.+.+..-..|+. ..|-.+-......|++..|.+.|+.....+ ..+...+|.|.-.-.+.|++++|..+++...
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999998876554443 356677777788899999999999888765 4457889999988999999999999999887
Q ss_pred hCCCCCC
Q 005127 367 SIKLKPT 373 (713)
Q Consensus 367 ~~~~~p~ 373 (713)
.. .|+
T Consensus 457 s~--~P~ 461 (478)
T KOG1129|consen 457 SV--MPD 461 (478)
T ss_pred hh--Ccc
Confidence 54 454
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-05 Score=78.46 Aligned_cols=397 Identities=12% Similarity=0.052 Sum_probs=178.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC------------------CCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCC
Q 005127 29 LHSYNRLIRQGRISECIDLLEDMERKG------------------LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP 90 (713)
Q Consensus 29 ~~~~~~L~~~g~~~~A~~l~~~m~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 90 (713)
.+.++.+-+...+..|.+-|....... +.+.+.......+..+...++-+.|+.....+|+.
T Consensus 47 ~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t 126 (564)
T KOG1174|consen 47 LYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPT 126 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCcc
Confidence 344555557778888888888776532 11222222233344455567778888888777643
Q ss_pred C-HHHHHHHHHHHHhCCC-hHHHH--------------HHHHHHHHcC---------------CCCCHHHHHHHHHHHHH
Q 005127 91 T-LSTFNMLMSVCASSKD-SEGAF--------------QVLRLVQEAG---------------LKADCKLYTTLITTCAK 139 (713)
Q Consensus 91 ~-~~~~~~li~~~~~~g~-~~~A~--------------~l~~~m~~~g---------------~~pd~~~~~~li~~~~~ 139 (713)
- ..-.|.++..+.+.|- -.++. +.+.-..+.+ ++|...+...-+.+++.
T Consensus 127 ~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq 206 (564)
T KOG1174|consen 127 LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQ 206 (564)
T ss_pred ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHH
Confidence 2 2333444444333321 11111 1111111111 11222222223333332
Q ss_pred c--CChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHH
Q 005127 140 S--GKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV-FNALITACGQSGAVDR 215 (713)
Q Consensus 140 ~--g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~ 215 (713)
+ ++...|...+-.+.... ++-|+.....+.+.+...|+.++|+..|++.... .|+..+ ...-.-.+.+.|+++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 2 33333333333332221 2334555555566666666666666666555433 222111 1111112334455555
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (713)
Q Consensus 216 A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (713)
...+...+.... +-....|-.-........+++.|+.+-++..+.+ +.+...|-.-...+.+.+++++|.-.|+..
T Consensus 285 ~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 285 DSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred HHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 544444443210 0111122222223334445555555555554443 223334444444455556666666666555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC
Q 005127 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS-NAKNWQKALELYEHMKSIKLKPT 373 (713)
Q Consensus 296 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~-~~g~~~~A~~l~~~m~~~~~~p~ 373 (713)
+...+. +...|..|+..|...|++.+|.-+-....+. ++.+..+.+.+. ..|. ...--++|.++++.-... .|+
T Consensus 361 q~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~ 436 (564)
T KOG1174|consen 361 QMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPI 436 (564)
T ss_pred Hhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCc
Confidence 443211 4455666666666666665555444443332 122233333221 1111 111224555555544432 343
Q ss_pred H-HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 374 V-STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 374 ~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
. ...+.+...+...|..++++.+++.... ..||....+.|...+...+.+.++...|.....
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2 3344445555555666666666655544 355555555555555555566666555555444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-06 Score=92.66 Aligned_cols=232 Identities=15% Similarity=0.132 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY-TTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~-~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (713)
........+.+.|+.++|..+++.+++++ |+...| ..+..+..-. .+.+...++|+++...- |...+...
T Consensus 40 ~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~r 115 (517)
T PF12569_consen 40 VLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRR 115 (517)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhH
Confidence 33445566777777788888887777764 444444 3344433222 24566677777776542 33322222
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC------------CCCCCCH
Q 005127 168 LIDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------------HPVDPDH 234 (713)
Q Consensus 168 li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------~~~~pd~ 234 (713)
+.-.+..-..+ ..+...+..+..+|++ .+|+.|-..|......+-..+++....... ..-.|..
T Consensus 116 l~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~ 192 (517)
T PF12569_consen 116 LPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPST 192 (517)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchH
Confidence 22222221222 2344455666677753 356666666665555554555554443210 0012332
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 235 I--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (713)
Q Consensus 235 ~--~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 312 (713)
. ++.-+...|...|++++|..+.+...+.. +..+..|..-...|-+.|++.+|.+.++........ |...-+-.+.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aK 270 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHH
Confidence 2 33444555666666666666666666554 333556666666666666666666666666665544 5555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 005127 313 FAGHAGKVEAAFEILQEAKNQG 334 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g 334 (713)
.+.++|++++|.+++....+.+
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCC
Confidence 6666666666666666555544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-05 Score=80.21 Aligned_cols=188 Identities=16% Similarity=0.111 Sum_probs=132.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 323 (713)
+.-+|+.-.|..-|+...+....+ ...|--+..+|.+..+.++-...|.+..+.+.. |..+|-.-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 344678888888888887766333 233777777888888888888888888876654 555666666666677888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 005127 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (713)
Q Consensus 324 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (713)
..-|++..... +.++..|-.+.-+..+.+.+++++..|++.++. ++.-+..||.....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 88888887764 335666777777777888888899999888754 3444678888888888888999999888887652
Q ss_pred CCCCC-------HHHHH--HHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 404 GLCPN-------TITYS--ILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 404 g~~p~-------~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.|+ ..++. .++.. .-.+++..|..+++...+.
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL 532 (606)
T ss_pred --ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc
Confidence 333 22221 12211 1337888888888887763
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-05 Score=79.39 Aligned_cols=359 Identities=13% Similarity=0.107 Sum_probs=233.3
Q ss_pred hHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005127 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 150 (713)
.+++...+++.+.+. +....|.....-.+...|+.++|....+.-.+.. ..+.+.|..+.-.+....++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 445555555554432 1122344444444566799999999988877754 346678888888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 005127 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230 (713)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 230 (713)
......+ +-|...|.-+--.-++.++++.......+..+.. +.....|..+..++--.|+...|..++++..+... -
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-~ 175 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-T 175 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Confidence 9999876 3477788877777778888888888777776652 33567788888899999999999999999877531 3
Q ss_pred CCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005127 231 DPDHITIGALM------KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (713)
Q Consensus 231 ~pd~~~~~~ll------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 304 (713)
.|+...+.-.. ....+.|.++.|.+.+......- ......-.+-...+.+.+++++|..++..++... ||.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 45655554332 34567888898888876554331 2222334566778899999999999999999874 566
Q ss_pred HHHHHHHH-HHHhcCCHHHHH-HHHHHHH----------------------------------HCCCCCCHHHHHHHHHH
Q 005127 305 VFLSALID-FAGHAGKVEAAF-EILQEAK----------------------------------NQGISVGIISYSSLMGA 348 (713)
Q Consensus 305 ~t~~~li~-~~~~~g~~~~a~-~~~~~m~----------------------------------~~g~~~~~~~~~~li~~ 348 (713)
.-|.-.+. ++.+--+.-++. .+|.... +.|+++ ++..+...
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SL 329 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSL 329 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHH
Confidence 65554444 333232222332 3444332 233221 22333333
Q ss_pred HHhcCCHHH----HHHHHHHHHhCC----------CCCCHHHHH--HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-H
Q 005127 349 CSNAKNWQK----ALELYEHMKSIK----------LKPTVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-T 411 (713)
Q Consensus 349 ~~~~g~~~~----A~~l~~~m~~~~----------~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t 411 (713)
|-.-...+- +..+...+...| -+|....|+ .++..|-..|+++.|+..++..++. .|+.+ .
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEl 407 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIEL 407 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHH
Confidence 322111111 111111111111 145555554 4677888999999999999998874 67654 4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005127 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (713)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (713)
|..=...+.+.|++++|..++++..+.. .||..
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~ 440 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA 440 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence 5555688999999999999999988754 34443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00015 Score=70.93 Aligned_cols=377 Identities=13% Similarity=0.096 Sum_probs=224.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCCh
Q 005127 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 108 (713)
..-++.+.++..|+.+++--...+- .....+..-+.......|++++|+..+..+. .++...+-.|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4556788889999998886664442 2223344445555567889999998887643 45666666666666667788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005127 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 188 (713)
.+|..+-.... .++-.-..|++...+.++-++-....+.+... ..---+|.+..-..-.+++|+++|.+.
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88877654332 22333334455555667766666666665432 122233444444445677888888877
Q ss_pred HhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc--CCH---------------
Q 005127 189 RSKNVKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--GQV--------------- 250 (713)
Q Consensus 189 ~~~g~~pd~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~--g~~--------------- 250 (713)
... .|+-...|.-+ -+|.+..-++-+.++++--... ++.+.+..|.......+. |+.
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 765 34555555433 3455556666666666655542 233334444333322221 221
Q ss_pred ------------------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 251 ------------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (713)
Q Consensus 251 ------------------~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 312 (713)
+.|++++--+.+. -+..--.++-.|.+.++..+|..+.+++.- ..|-......++.
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 1222222111111 124455677788999999999999887643 3454444444443
Q ss_pred HH-H----hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 313 FA-G----HAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 313 ~~-~----~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
+. + ....+.-|.+.|+..-..+..-|.. --.++...+.-..++++..-.++.+...-...|...+| +..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 22 1 1223556777777665555443332 23445555566677888888888887665455666555 7789999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 005127 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLL 432 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~ 432 (713)
.|.+.+|.++|-+.....+ -|..+|.+++ .+|.+.+..+.|+.++
T Consensus 406 tgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred hcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999976654333 3667777655 7788999999987765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-06 Score=84.18 Aligned_cols=218 Identities=11% Similarity=-0.021 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 212 AVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (713)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~pd--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (713)
..+.++.-+.++.... ...|+ ...|..+...|.+.|+.++|...|+...+.+ +.++..|+.+...|...|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4455555555555321 22222 2345556666777777777777777777665 455677777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005127 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (713)
Q Consensus 290 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 369 (713)
..|++..+.... +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 777777765433 45566667777777788888887777777653 222111122222344567788888886544321
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-----LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (713)
Q Consensus 370 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 439 (713)
.|+...| ...+...|+..++ +.+..+.+.- +.| ....|..+...+.+.|++++|+..|++..+.+
T Consensus 196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2332222 1222334555444 3444444210 111 23467777788888888888888888888754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-06 Score=87.76 Aligned_cols=95 Identities=13% Similarity=-0.036 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005127 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|.+.|+...+... -+..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4444444555555555555555555432 22344555555555555555555555555554321 133444445555555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 005127 175 AGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~ 191 (713)
.|++++|++.|++..+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-06 Score=92.95 Aligned_cols=234 Identities=16% Similarity=0.147 Sum_probs=135.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhC-----C--CCCCHH
Q 005127 133 LITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVHT-YGALIDGCAKAGQVAKAFGAYGIMRSK-----N--VKPDRV 198 (713)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~pd~~ 198 (713)
|...|...|+++.|..+++...+. |. .|.+.+ .+.+...|...+++++|..+|+++... | .+.-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 555666666666666666655442 11 122222 223455666667777777776666431 2 111234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC----
Q 005127 199 VFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHI-TIGALMKACANAGQVDRAREVYKMIHKY---NIK---- 266 (713)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~~pd~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~---~~~---- 266 (713)
+++.|..+|.+.|++++|...+++...- ..+ ..|.+. .++.+...|+..+++++|..+++...+. -+.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 5556666677777766665555443220 011 122222 3455566677777777777777644331 011
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC
Q 005127 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-----G-VIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN----QGI 335 (713)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~ 335 (713)
.-..+++.|...|.+.|++++|.++|++.... | ..+ ....++-+...|.+.+...+|.++|.+... .|.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 12356778888888888888888888776532 1 111 234566777778788887777777765432 221
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 336 --SVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 336 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
+-...+|..|...|.+.|+++.|.++.+...
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2234678888888888888888888877665
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-05 Score=73.45 Aligned_cols=405 Identities=11% Similarity=0.066 Sum_probs=207.8
Q ss_pred hHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhC
Q 005127 28 QLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (713)
Q Consensus 28 ~~~~~~~L~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (713)
++..|-+.+ +.|++++|+..+.-+....-.|....+ .+.-...-.|.+.+|..+-...+ .++..-..|....-+.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v--nLAcc~FyLg~Y~eA~~~~~ka~-k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV--NLACCKFYLGQYIEAKSIAEKAP-KTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch--hHHHHHHHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHh
Confidence 455565544 678888888888776655432222212 12222223566777777665544 2333444455556666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHH
Q 005127 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-DGCAKAGQVAKAFGA 184 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~l 184 (713)
++-++-..+++.+... ..---+|.+.....-.+.+|+++|...... .|+-...|.-+ -+|.+..-++-+.++
T Consensus 135 ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 7766666666655532 122233444444445677888888887765 34444444333 356666777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH--------HH--------------------
Q 005127 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH--------IT-------------------- 236 (713)
Q Consensus 185 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~--------~~-------------------- 236 (713)
++-..+. ++-++..-|.......+.=.-..|.+-..++......--|-. ++
T Consensus 208 l~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPE 286 (557)
T KOG3785|consen 208 LKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPE 286 (557)
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChH
Confidence 7766654 223344444444433333222233333333322110001100 00
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHH-H
Q 005127 237 -IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-------DWEFACSVYDDMTKKGVIPDEVF-L 307 (713)
Q Consensus 237 -~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t-~ 307 (713)
-..|+--|.+.+++.+|..+.+++. +.++.-|-.-.-.+...| ...-|...|+-.-+++..-|... -
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR 362 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence 0112224566677777776655442 222333322111222222 24455555555444443323221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHh
Q 005127 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA-LITALCD 386 (713)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~-li~~~~~ 386 (713)
-++..++.-..++++.+-.+..+...-...|.+.+| +..+++..|++.+|+++|-.+....+ .|..+|-+ |..+|.+
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHh
Confidence 233334444556677776666665543333444443 56777778888888888876654332 34455544 4467778
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 387 GDQLPKTMEVLSDMKSLGLCPNTITYSIL-LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (713)
+++++-|.+++-.+.. ..+..+...+ .+-|.+.+.+--|-+.|+.+.. ..|+.+.|..=-.+|
T Consensus 441 nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGAC 504 (557)
T ss_pred cCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchH
Confidence 8888877766544432 2234443333 3667777777777777766655 456666555444444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-05 Score=80.69 Aligned_cols=303 Identities=15% Similarity=0.025 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---H
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA---L 203 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~---l 203 (713)
.|..+...+...++.+.+.+.+....+... .++.. ........+...|++++|..++++..... +.|...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344444444445555555444444333211 11211 11112223445566666666666665542 223333331 1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 005127 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (713)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 282 (713)
.......+..+.+.+.+... .+..|+ ......+...+...|++++|...++...+.. +.+...+..+...|...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11111233444444444331 122233 2333344456666777777777777766654 44455666666777777
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCH
Q 005127 283 GDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAKNW 355 (713)
Q Consensus 283 g~~~~A~~l~~~m~~~g~-~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~-~--~li~~~~~~g~~ 355 (713)
|++++|...+++...... .|+. ..|..+...+...|+.++|..+++....... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 777777777776655422 1222 2344556666677777777777776643321 1111111 1 223333333432
Q ss_pred HHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-------C-CHHHHHHHHHHHHhcC
Q 005127 356 QKALEL---YEHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-------P-NTITYSILLVACERKD 423 (713)
Q Consensus 356 ~~A~~l---~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-------p-~~~t~~~ll~a~~~~g 423 (713)
..+.+. ...-..... ............++...|+.++|..++..+...... . ..........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 111111100 011122224566677788888888888887653211 0 1111222224556788
Q ss_pred CHHHHHHHHHHHHH
Q 005127 424 DVEVGLMLLSQAKE 437 (713)
Q Consensus 424 ~~~~a~~~~~~m~~ 437 (713)
+.++|.+.+.....
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00049 Score=72.71 Aligned_cols=452 Identities=11% Similarity=0.160 Sum_probs=281.9
Q ss_pred chhHHHHHHHH--hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHH-HH------HH-------hhHHHHHHHHHhhhCC
Q 005127 26 SEQLHSYNRLI--RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFF-NV------CK-------SQKAIKEAFRFFKLVP 88 (713)
Q Consensus 26 ~~~~~~~~~L~--~~g~~~-~A~~l~~~m~~~~~~~~~~~~~~~l~-~~------~~-------~~~~~~~A~~~~~~~~ 88 (713)
.-++.+|-+++ +.|... .-..+|+...+.= +......+..+- +. |. -++.++.++.++..||
T Consensus 24 p~svk~W~RYIe~k~~sp~k~~~~lYERal~~l-p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmp 102 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAGSPDKQRNLLYERALKEL-PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMP 102 (835)
T ss_pred chhHHHHHHHHHHHccCChHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 35678898888 455443 4555677777653 223344444331 11 11 1233444555554554
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005127 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (713)
..|-..+......++...-...|+..+..- +......|...+......+-++.+..++++..+. ++..-+-
T Consensus 103 ----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~ee 174 (835)
T KOG2047|consen 103 ----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREE 174 (835)
T ss_pred ----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHH
Confidence 467777788888999999999998877542 2233457888888888889999999999999864 4455777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCCCC--HHH
Q 005127 168 LIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVVFNALITACGQSGAVDR---AFDVLAEMNAEVHPVDPD--HIT 236 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~pd--~~~ 236 (713)
-|..+++.+++++|-+.+...... .-+.+-..|.-+-...+++.+.-. ...++..+. +.-+| -..
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi----~rftDq~g~L 250 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI----RRFTDQLGFL 250 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc----ccCcHHHHHH
Confidence 888999999999999999887643 124556667777776666544332 233444443 33455 357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------------cCC------HHHHHHHHHH
Q 005127 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----------------TGD------WEFACSVYDD 294 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----------------~g~------~~~A~~l~~~ 294 (713)
|++|.+-|.+.|.++.|..+|++....-.. ..-|+.+-++|++ .++ ++-...-|+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 899999999999999999999987664221 1223333333322 111 2223333444
Q ss_pred HHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHH
Q 005127 295 MTKKGV-----------IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GIISYSSLMGACSNAKNWQK 357 (713)
Q Consensus 295 m~~~g~-----------~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~------~~~~~~~li~~~~~~g~~~~ 357 (713)
+..... .-++.+|..-+.. ..|+..+-...+.++.+. +.| -...|..+...|-+.|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 332211 0123333333322 346677777788877664 122 23568889999999999999
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHC----------CCCC-------CHHHHHHHHH
Q 005127 358 ALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL----------GLCP-------NTITYSILLV 417 (713)
Q Consensus 358 A~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----------g~~p-------~~~t~~~ll~ 417 (713)
|+.+|++..+..++.- ..+|..-...-.++.+++.|+++.++.... |-.| +...|+..++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999886543221 234555555666788999999988876531 1111 1224555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCHHH-HHHHHHHHHhhHHHHHHHHHHhhhccCCCC-----ccccccHH------
Q 005127 418 ACERKDDVEVGLMLLSQAKEDGV-IPNLVM-FKCIIGMCSRRYEKARTLNEHVLSFNSGRP-----QIENKWTS------ 484 (713)
Q Consensus 418 a~~~~g~~~~a~~~~~~m~~~g~-~p~~~~-~~~li~~~~r~~~~a~~l~~a~~~~~~~~~-----~~~~~~~~------ 484 (713)
.-...|-++....+++++++..+ .|.+.. |..+ +++-..++++...|+.+-+ ..-..|+.
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmf-------LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF-------LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 66667888888889999888644 344433 2222 4444555666666665522 22234543
Q ss_pred ---------HHHHHHHHHHHcCCCccHH
Q 005127 485 ---------LALMVYREAIVAGTIPTVE 503 (713)
Q Consensus 485 ---------~A~~~~~~m~~~g~~P~~~ 503 (713)
.|..+|++.++ |+.|...
T Consensus 559 ~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 48999999988 7777764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-05 Score=79.55 Aligned_cols=197 Identities=14% Similarity=0.026 Sum_probs=90.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCC--HHHHHHHHHHH
Q 005127 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGT--PEVYTIAINCC 279 (713)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~--~~~~~~li~~~ 279 (713)
+...+...|++++|.+.+++.... .+.+...+..+..+|...|++++|...++....... .++ ...|..+...+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~---~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALEL---NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 334445555555555555555432 122233444455555555555555555555444321 111 12334455556
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CCCHHHHHHHHHHHHh
Q 005127 280 SQTGDWEFACSVYDDMTKKGV-IPDEVFL-S--ALIDFAGHAGKVEAAFEI---LQEAKNQGI-SVGIISYSSLMGACSN 351 (713)
Q Consensus 280 ~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~li~~~~~~g~~~~a~~~---~~~m~~~g~-~~~~~~~~~li~~~~~ 351 (713)
...|++++|..+|++...... .+..... + .++.-+...|....+.+. ......... ............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 666666666666666543221 1111111 1 222222223322222211 111111100 1111222345666777
Q ss_pred cCCHHHHHHHHHHHHhCCCC---C-----CHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 352 AKNWQKALELYEHMKSIKLK---P-----TVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~~~~---p-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.|+.+.|..+++.+...... - .+...-...-++...|+.++|++++.+...
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888887653211 0 111122222345578899999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00016 Score=86.59 Aligned_cols=337 Identities=9% Similarity=-0.038 Sum_probs=174.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHH
Q 005127 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI------EPNV--HTYGALIDGCA 173 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~~--~~~~~li~~~~ 173 (713)
....|++..+...+..+.......+..........+...|+++++..++......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 334556665555554432111111222223334445566777777777776543210 0111 11122233455
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---CCHHHHHHHHHHHHH
Q 005127 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDHITIGALMKACAN 246 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---pd~~~~~~ll~~~~~ 246 (713)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+......... ....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 677888888877776543111121 2334455556667888887777776643211111 112344455566777
Q ss_pred cCCHHHHHHHHHHHHhc----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHH
Q 005127 247 AGQVDRAREVYKMIHKY----NIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIP--DEVFLSALIDFAG 315 (713)
Q Consensus 247 ~g~~~~A~~~~~~m~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~~~t~~~li~~~~ 315 (713)
.|+++.|...+++.... +... ....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 78888887777655432 2111 1223444555566678888887777765442 1111 1233344455666
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 005127 316 HAGKVEAAFEILQEAKNQG--ISVGII--S--YSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCD 386 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~g--~~~~~~--~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~ 386 (713)
..|+.+.|...+....... ...... . ....+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 7778887777776664321 011000 0 01122334556777777777666543211111 1113345556777
Q ss_pred CCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.|++++|...+.+.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888887777776542 22222 234445556677778888888777777654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-05 Score=73.65 Aligned_cols=199 Identities=16% Similarity=0.071 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 208 (713)
+...|.-.|...|+...|.+-+++..+.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34456667777888888888888877764 2245677777778888888888888888777653 334566677777777
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (713)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (713)
..|.+++|.+.|++.... ....--..+|..+.-+..+.|+.+.|...|+...+.+ +..+.+.-.+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 778888888888777653 1122223466666666777788888888888777765 34456666777777778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 289 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
...++.....+. ++..+.-..|......|+.+.+-+.=..+.+
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888877777666 6777777777777777777766665555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00073 Score=67.73 Aligned_cols=291 Identities=12% Similarity=0.043 Sum_probs=204.4
Q ss_pred CChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHH
Q 005127 106 KDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT-YGALIDGCAKAGQVAKAFG 183 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~ 183 (713)
++...|.+.+-.+... -++.|+.....+...+...|+.++|...|+..... .|+..+ .....-.+.+.|+.+....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 4444444444444333 35667788999999999999999999999998754 333221 1112223457788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005127 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (713)
Q Consensus 184 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 263 (713)
+...+.... .-+...|-.-....-...++..|+.+-+...... +.++..|-.-...+...+++++|.-.|+.....
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 877776542 2234445444455556788999998888766431 223334444446778899999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005127 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI-DFAG-HAGKVEAAFEILQEAKNQGISVGIIS 341 (713)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~ 341 (713)
. +.+..+|.-|+..|...|++.+|.-+-++..+. ...+..+.+.+. ..|. ...--++|..+++...+.. +.-...
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~A 440 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPA 440 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHH
Confidence 4 456789999999999999999998887765443 112445554442 2222 2233468888888776653 223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005127 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (713)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (713)
.+.+...|...|..+.+..+++.-... .||...-+.|...+...+.+.+|++.|..... +.|+.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 778888899999999999999987754 79999999999999999999999999998877 45643
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00049 Score=72.11 Aligned_cols=380 Identities=12% Similarity=0.093 Sum_probs=213.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHH
Q 005127 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (713)
Q Consensus 33 ~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 112 (713)
-.||+.++|++|+.+.+.-.... ..+..... -.....+.+..++|+..++...+.+..+...-...|.+.+++++|+
T Consensus 54 ValIq~~ky~~ALk~ikk~~~~~--~~~~~~fE-KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydeal 130 (652)
T KOG2376|consen 54 VALIQLDKYEDALKLIKKNGALL--VINSFFFE-KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEAL 130 (652)
T ss_pred hhhhhhhHHHHHHHHHHhcchhh--hcchhhHH-HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHH
Confidence 35779999999996665433211 11111111 1112346788999999999666666667777778899999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHH
Q 005127 113 QVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI---DGCAKAGQVAKAFGAYGIM 188 (713)
Q Consensus 113 ~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m 188 (713)
.+|+.+.+++.+- |...-..++.+-.. -.+ ++.+... ..| ..+|..+. ..+...|++.+|+++++..
T Consensus 131 diY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 131 DIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-QLLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-HHHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9999998876331 11111222221111 011 1222222 222 22333333 3455678888888888877
Q ss_pred HhC-------C------CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHH-HHHHHHHHHHHcCC----
Q 005127 189 RSK-------N------VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACANAGQ---- 249 (713)
Q Consensus 189 ~~~-------g------~~pd~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~-~~~~ll~~~~~~g~---- 249 (713)
... + +.-+..+ -..|.-.+-..|+.++|.+++.........-.|... .-|.|+. .....+
T Consensus 202 ~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva-~~~d~~~~d~ 280 (652)
T KOG2376|consen 202 LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVA-LSKDQNYFDG 280 (652)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhh-hccccccCch
Confidence 221 1 1111111 112344556678888888888877764322121111 1122221 111000
Q ss_pred ------------------------------------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCCH
Q 005127 250 ------------------------------------------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ--TGDW 285 (713)
Q Consensus 250 ------------------------------------------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~ 285 (713)
.+.+.++-... .+..|. ..+.+++....+ ...+
T Consensus 281 ~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~ 357 (652)
T KOG2376|consen 281 DLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKH 357 (652)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHH
Confidence 00000000000 011122 233333333322 2346
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSLMGACSNAKNWQK 357 (713)
Q Consensus 286 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~--------~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 357 (713)
..|.+++...-+....-.....-..+......|+++.|.+++. .+.+.+.. +.+..+++..|.+.++-+.
T Consensus 358 ~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 358 KKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred hhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCcc
Confidence 6777777777665433234566667777888999999999999 55554444 4566778888999888888
Q ss_pred HHHHHHHHHhC--CCCCCHHH----HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005127 358 ALELYEHMKSI--KLKPTVST----MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431 (713)
Q Consensus 358 A~~l~~~m~~~--~~~p~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 431 (713)
|..++.+.... .-.+.... |.-+...-.++|+-++|..+++++.+. .++|..+...++.+|++. +++.|..+
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 88888776531 00122233 333334445789999999999999985 367888999999998875 45666654
Q ss_pred H
Q 005127 432 L 432 (713)
Q Consensus 432 ~ 432 (713)
-
T Consensus 514 ~ 514 (652)
T KOG2376|consen 514 S 514 (652)
T ss_pred h
Confidence 4
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4e-05 Score=70.93 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=78.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322 (713)
Q Consensus 243 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 322 (713)
.|...|++..|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+-|++....... +....|.....+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHH
Confidence 4444444444444444444443 333344444444444444444444444444433222 22333333334444444444
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005127 323 AFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 323 a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
|...|+....... ..-..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.|.....+.|++-.|...++...
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4444444443311 1112334444444444444444444444444331 1112233344444444444445544444444
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 402 SLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (713)
Q Consensus 402 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (713)
..+. ++..+.-..|..-...|+.+.+-++=
T Consensus 201 ~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 201 QRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred hccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3332 44444444444444444444444433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.5e-08 Score=62.72 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005127 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (713)
Q Consensus 369 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (713)
|+.||..|||+||.+||+.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-06 Score=86.35 Aligned_cols=253 Identities=13% Similarity=0.152 Sum_probs=118.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHH
Q 005127 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (713)
Q Consensus 31 ~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 110 (713)
......-.|++..|+.-.+ ..... .+........+.+.....|+.+.++.-.....+|.......+...+....+-+.
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHH
Confidence 3344455677777776555 22221 111223334455556666666666555544445555554444333333233333
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 111 AFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 111 A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
++.-+.........+ +..........+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333322222221 2222222233444556666666665432 245555556666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005127 190 SKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (713)
Q Consensus 190 ~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 265 (713)
+.+ .|. +...|..++.. ...+.+|..+|+++.. ...++..+.+.+..++...|++++|..++.+..+.+
T Consensus 159 ~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 159 QID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp CCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred hcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 542 232 22223333322 2246666666666543 234455555666666666666666666666555443
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 005127 266 KGTPEVYTIAINCCSQTGDW-EFACSVYDDMTKK 298 (713)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~ 298 (713)
+.++.+...+|.+....|+. +.+.+.+.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 33444544455555555554 4455555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0018 Score=70.23 Aligned_cols=221 Identities=13% Similarity=0.053 Sum_probs=130.5
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhCCChHHH
Q 005127 38 QGRISECIDLLEDMERK---GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 38 ~g~~~~A~~l~~~m~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 111 (713)
..+.++++...--+.++ +.+.++..+.-.+.-.....|++..+.+.|++..+ .....|+.+-..+...|.-..|
T Consensus 297 Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~A 376 (799)
T KOG4162|consen 297 RENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKA 376 (799)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHH
Confidence 44555555443333221 22335555555555556677888888888886542 3456788888888888888888
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHH-cCChhHHHHHHHHHHHC--C--CCCCHHHHHHHHHHHHHc----------
Q 005127 112 FQVLRLVQEAGLKA-DCKLYTTLITTCAK-SGKVDAMFEVFHEMVNA--G--IEPNVHTYGALIDGCAKA---------- 175 (713)
Q Consensus 112 ~~l~~~m~~~g~~p-d~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~--g--~~~~~~~~~~li~~~~~~---------- 175 (713)
..+++.-....-.| |...+-..-..|.+ .+.+++++..-.+.... + -......|-.+.-+|...
T Consensus 377 v~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR 456 (799)
T KOG4162|consen 377 VNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER 456 (799)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH
Confidence 88887655433224 33334333334433 35666666665555541 1 122334455555555432
Q ss_pred -CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005127 176 -GQVAKAFGAYGIMRSKNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (713)
Q Consensus 176 -g~~~~A~~l~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A 253 (713)
....++++.+++..+.+. .|+..-| +.--|+..++++.|++...+..+- +-..+...|..|.-.+...+++.+|
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l--~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALAL--NRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhhHHH
Confidence 124567777777766542 3333333 334466677788888888887764 2245667777777778888888888
Q ss_pred HHHHHHHHh
Q 005127 254 REVYKMIHK 262 (713)
Q Consensus 254 ~~~~~~m~~ 262 (713)
+.+.+....
T Consensus 533 l~vvd~al~ 541 (799)
T KOG4162|consen 533 LDVVDAALE 541 (799)
T ss_pred HHHHHHHHH
Confidence 888775543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00038 Score=83.28 Aligned_cols=332 Identities=9% Similarity=0.003 Sum_probs=210.7
Q ss_pred HhhHHHHHHHHHhhhCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHH
Q 005127 72 KSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KAD--CKLYTTLITTCAK 139 (713)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~------~pd--~~~~~~li~~~~~ 139 (713)
...|.++.+.++++.++. .+..........+...|++++|...+....+.-- .+. ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 345667777777776641 1222223344556678999999999987754311 111 1122233445667
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHhc
Q 005127 140 SGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNV---KPD--RVVFNALITACGQS 210 (713)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~~~~~li~~~~~~ 210 (713)
.|++++|...+++....-...+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999988763212222 3455666677889999999999988764210 111 23445566778889
Q ss_pred CCHHHHHHHHHHhhhCC--CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHh
Q 005127 211 GAVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQ 281 (713)
Q Consensus 211 g~~~~A~~~~~~m~~~~--~~~~--p-d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~~~~~li~~~~~ 281 (713)
|++++|...+.+..... .+.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999887764421 1111 1 23344555667778899999999988765421 111 23445556777889
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 005127 282 TGDWEFACSVYDDMTKKGVI-PDEVFL-----SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNA 352 (713)
Q Consensus 282 ~g~~~~A~~l~~~m~~~g~~-p~~~t~-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~ 352 (713)
.|++++|.+.+.+....... .....+ ...+..+...|+.+.|...+........... ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 99999999999887542111 011111 1122445568899999988776543221111 11245667778899
Q ss_pred CCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 005127 353 KNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (713)
Q Consensus 353 g~~~~A~~l~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (713)
|+.++|...+++.... |..++ ..+...+..+|...|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999987642 22222 245666777888999999999999998875
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.0002 Score=76.28 Aligned_cols=194 Identities=15% Similarity=0.178 Sum_probs=109.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005127 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (713)
Q Consensus 134 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 213 (713)
|.+......+.+|+.+++.+.... .-..-|..+.+-|+..|+++.|.++|.+. ..++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344445566666666666665442 12233555666677777777777766543 1245556667777777
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (713)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 293 (713)
+.|.++-.+.. +.......|-+-..-+-+.|++.+|.++|-.+...+ ..|..|-+.|..++.+++..
T Consensus 808 ~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~---------~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 808 EDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD---------KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch---------HHHHHHHhhCcchHHHHHHH
Confidence 77766655542 333444455554555556666666666654332211 23556666666666666655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (713)
Q Consensus 294 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 363 (713)
+-.... -..|...+..-|...|++..|..-|-+. .-|.+-+++|-..+.+++|.++-+
T Consensus 875 k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 875 KHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 432111 1234445555566677777776655432 235566777777777777766643
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.7e-08 Score=61.18 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005127 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (713)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 188 (713)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0011 Score=71.69 Aligned_cols=391 Identities=15% Similarity=0.085 Sum_probs=249.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--C--C-CHHHHHHHHHHHHh-CCC
Q 005127 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--N--P-TLSTFNMLMSVCAS-SKD 107 (713)
Q Consensus 34 ~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~-~~~~~~~li~~~~~-~g~ 107 (713)
.|...|+++.+.+.|++...-- +.....++. +.-.+...|.-..|+.+.+.-. . | |+..+-..-..|.+ .+.
T Consensus 332 al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~-~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~ 409 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFS-FGEHERWYQ-LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKL 409 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHH-HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhh
Confidence 3458999999999999876532 222333333 2222334455677888887532 2 3 34444444455554 467
Q ss_pred hHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 005127 108 SEGAFQVLRLVQEA--GL--KADCKLYTTLITTCAKS-----------GKVDAMFEVFHEMVNAG-IEPNVHTYGALIDG 171 (713)
Q Consensus 108 ~~~A~~l~~~m~~~--g~--~pd~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~ 171 (713)
.++++..-.+.... +. ......|..+.-+|... ....++++.+++..+.+ -.|++..|-++ -
T Consensus 410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q 487 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--Q 487 (799)
T ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--H
Confidence 77777777766652 11 12344555555555432 12356778888887765 34444444443 5
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 005127 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~ 251 (713)
|+..++++.|.+..++..+.+-.-+...|..|.-.+.-.+++.+|+.+.+....+ ...|......-+..-...++.+
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E---~~~N~~l~~~~~~i~~~~~~~e 564 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE---FGDNHVLMDGKIHIELTFNDRE 564 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---hhhhhhhchhhhhhhhhcccHH
Confidence 7778899999999999998866778999999999999999999999999887654 1122222222222233355555
Q ss_pred HHHHHHHHHHhc---------------------C-------CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCC-
Q 005127 252 RAREVYKMIHKY---------------------N-------IKGTPEVYTIAINCCS-QTGDWEFACSVYDDMTKKGVI- 301 (713)
Q Consensus 252 ~A~~~~~~m~~~---------------------~-------~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~- 301 (713)
++......+... + ....+.++..+..-.. +.....-... |...-+.
T Consensus 565 ~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~----Lp~s~~~~ 640 (799)
T KOG4162|consen 565 EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK----LPSSTVLP 640 (799)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc----cCcccccC
Confidence 555444333210 0 0001122222111111 0000000000 2222122
Q ss_pred -CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005127 302 -PD------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374 (713)
Q Consensus 302 -p~------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 374 (713)
|+ ...|......+.+.+..++|...+.+..+.. +....+|......+...|..++|.+.|....... +-++
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv 718 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHV 718 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCc
Confidence 22 2345566778888999999998888877653 5567788888888999999999999999887653 3346
Q ss_pred HHHHHHHHHHHhCCChhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 375 STMNALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.+.+++...+.+.|+..-|.. ++.++.+.+ +-|...|-.+-..+.+.|+.++|.+.|....+.
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 789999999999999888888 999998854 337889999999999999999999999887764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.2e-06 Score=82.83 Aligned_cols=128 Identities=17% Similarity=0.174 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005127 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC----SNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (713)
Q Consensus 304 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 379 (713)
.......+..|.+.++++.|.+.++.|.+.+ .|. +...|..++ .-...+.+|..+|+++.+. +.+++.+.|.
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng 206 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNG 206 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHH
Confidence 3344444445555555555555555544332 121 122222222 1122455555555555432 2345555555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 005127 380 LITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDV-EVGLMLLSQAKE 437 (713)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~ 437 (713)
+..++...|++++|.+++.+.... .| |..|...++.++...|+. +.+.+++.++.+
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555555666666666655554432 22 334455555555555555 445555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0011 Score=73.44 Aligned_cols=317 Identities=14% Similarity=0.173 Sum_probs=177.0
Q ss_pred CCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHH---------------------------h
Q 005127 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCK---------------------------S 73 (713)
Q Consensus 22 ~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~~l~~~~~---------------------------~ 73 (713)
..|+.+-.++-.++...+-..+-+++++++.-.+ .++.+.-+..+++-... .
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 4456667777788899999999999999987543 34444444443332222 2
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005127 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 153 (713)
.+-+++|+..|+... -+..+.+.||.- -++++.|.+.-++.. .+.+|+.+..+-.+.|.+.+|.+-|-+.
T Consensus 1061 ~~LyEEAF~ifkkf~-~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD-MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred hhHHHHHHHHHHHhc-ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 233344444443321 222333333321 123333333332221 2345666666666666666666555333
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC
Q 005127 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (713)
Q Consensus 154 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd 233 (713)
-|+..|.-+++...+.|.+++-.+.+...+++.-+|... +.||-+|++.+++.+..+++. -|+
T Consensus 1131 ------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---------gpN 1193 (1666)
T KOG0985|consen 1131 ------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---------GPN 1193 (1666)
T ss_pred ------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---------CCC
Confidence 255566666666666666666666666555554444433 346666666666665544431 355
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
+.....+.+-|...+.++.|.-+|..+ .-|..|...+...|+++.|..--++. .+..||.-+-.+
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFA 1258 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHH
Confidence 555566666666666666666665443 34566666677777777776655443 244577777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhC
Q 005127 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDG 387 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~ 387 (713)
|...+.+..| +|-..++-....-..-|+..|-..|.+++-..+++.-. |+. .....|+-|.-.|++-
T Consensus 1259 Cvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1259 CVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc
Confidence 7666555433 22222233334455667777888888888877776543 222 2234566665556543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00024 Score=69.28 Aligned_cols=302 Identities=11% Similarity=0.084 Sum_probs=166.9
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHH---HHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 005127 59 MDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM---SVCASSKDSEGAFQVLRLVQEAGLKADCKLY-TTLI 134 (713)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~-~~li 134 (713)
.+..-|.-+.+.+...|++.+|+..|.....-|+..|.++. ..|...|+...|+.-+.++++. +||-..- ..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34444555555555555556666555555444444444433 2355555555555555555543 4443211 1122
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC------------HH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005127 135 TTCAKSGKVDAMFEVFHEMVNAGIEPN------------VH--TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (713)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~------------~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 200 (713)
..+.+.|.++.|..-|+.+.+....-+ .. .....+..+.-.|+...|+.....+++.. +-|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 334555666666666665555421100 00 11223334445566666666666665542 2344445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH----HHHH--
Q 005127 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE----VYTI-- 274 (713)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~-- 274 (713)
..-..+|...|.+..|+.-+....+. -..+..++--+-..+...|+.+.++...++..+.+ |+-. .|..
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askL---s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKL---SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc---cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHH
Confidence 55556666666666665555444321 12233444444555566666666666666555543 2111 1111
Q ss_pred -----H--HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005127 275 -----A--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFL---SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344 (713)
Q Consensus 275 -----l--i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 344 (713)
+ +......++|.++++-.+...+.......+.+ ..+-.++...+.+.+|++.-.++.... +.|+.++.-
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~d 346 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHH
Confidence 1 12234567888888888888776544233333 344455667788899998888887753 345888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 005127 345 LMGACSNAKNWQKALELYEHMKSIK 369 (713)
Q Consensus 345 li~~~~~~g~~~~A~~l~~~m~~~~ 369 (713)
-..+|.-...++.|+.-|+...+.+
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8899998999999999999888753
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0023 Score=66.60 Aligned_cols=387 Identities=12% Similarity=0.122 Sum_probs=207.1
Q ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005127 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (713)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 134 (713)
|.+......+++.+..+ .++++...++++. +-....|..-|..-.+.++++..+.+|.+.+..-+ +...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 77777777777777766 8999999999875 34567899999999999999999999998876533 455565555
Q ss_pred HHHHH-cCChhH----HHHHHHH-HHHCCCCCC-HHHHHHHHHH---------HHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 005127 135 TTCAK-SGKVDA----MFEVFHE-MVNAGIEPN-VHTYGALIDG---------CAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (713)
Q Consensus 135 ~~~~~-~g~~~~----A~~~~~~-m~~~g~~~~-~~~~~~li~~---------~~~~g~~~~A~~l~~~m~~~g~~pd~~ 198 (713)
+--.+ .++... ..+.|+- +.+.|.++- ...|+..+.. |..+.+++...++|.++...-+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 43322 233333 2233443 333454433 2346555543 344557778888888887542211111
Q ss_pred HHH------HHHHHH-------HhcCCHHHHHHHHHHhhhCCCCCCCCHHH---------------HHHHHHHHHHcC--
Q 005127 199 VFN------ALITAC-------GQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMKACANAG-- 248 (713)
Q Consensus 199 ~~~------~li~~~-------~~~g~~~~A~~~~~~m~~~~~~~~pd~~~---------------~~~ll~~~~~~g-- 248 (713)
.|+ .=|+.. -+...+..|.+++++......|+..+..+ |-.+|..--..+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 222 111111 12334666777776664432333322222 333333111111
Q ss_pred ----CH--HHHHHHHHHH-HhcCCCCCHHHHHHHHHH-------HHhcCC-------HHHHHHHHHHHHHCCCCCCHHHH
Q 005127 249 ----QV--DRAREVYKMI-HKYNIKGTPEVYTIAINC-------CSQTGD-------WEFACSVYDDMTKKGVIPDEVFL 307 (713)
Q Consensus 249 ----~~--~~A~~~~~~m-~~~~~~~~~~~~~~li~~-------~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~ 307 (713)
.+ ....-++++. .-.+.. +.+|----.. +...|+ -+++..+++.....-..-+..+|
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0111112211 111222 2222211111 111222 45666777665543333344445
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 005127 308 SALIDFAGHAG---KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITA 383 (713)
Q Consensus 308 ~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~ 383 (713)
..+.+.-...- ..+....+++++...-..--..+|..+++.-.+..-+..|+.+|.+..+.+..+ ++..++++|.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 44443211111 244555555555544222223466667777777777777777777777766555 66677777776
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 005127 384 LCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIG 452 (713)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~ 452 (713)
||. ++.+-|.++|+--.+. -+|. .--...++-+.+.++-..++.+|++....++.|| ..+|..+|+
T Consensus 412 ~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 664 5566777777653332 2333 3333556666777777777777777776655544 356666664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0022 Score=69.57 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=42.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHhCCChHHHHHH
Q 005127 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFNMLMSVCASSKDSEGAFQV 114 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l 114 (713)
+..|-+++|..+|++..+-+ ++-+++.+.|.+++|+++-+.-..- =..||.....-+-..++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 47888999999998887755 2345566677777777765532211 112444444444445566666555
Q ss_pred HH
Q 005127 115 LR 116 (713)
Q Consensus 115 ~~ 116 (713)
|+
T Consensus 881 yE 882 (1416)
T KOG3617|consen 881 YE 882 (1416)
T ss_pred HH
Confidence 54
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0028 Score=62.18 Aligned_cols=310 Identities=15% Similarity=0.117 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG-AL 168 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~l 168 (713)
++.-.--+.+.+...|++..|+.-|...++- .|+ -.++-.-...|...|+...|+.-+....+. +||-..-. .-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 4444455677788889999999999988864 333 223444456788889999999999998876 67753221 22
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----HH------------HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC
Q 005127 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRV----VF------------NALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (713)
Q Consensus 169 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p 232 (713)
...+.+.|.++.|..-|+..++.. |+.. .+ ...+..+.-.|+...|+.....+... .+=
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi---~~W 187 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI---QPW 187 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc---Ccc
Confidence 345778999999999999998763 3211 11 11223334445555555555555432 112
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (713)
Q Consensus 233 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 312 (713)
|...+..-..+|...|++..|..-++...+.. ..+...+--+-..+...|+.+.++...++.++. .||....-.
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~--- 261 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP--- 261 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH---
Confidence 33344444555566666666555555444433 233344444455555556665555555555543 233221110
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HH---HHHHHHHHHHhC
Q 005127 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VS---TMNALITALCDG 387 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~---~~~~li~~~~~~ 387 (713)
.|-+ +.+..+.+..|. .....+++.++.+-.+...+. .|. .+ .+..+-.+|...
T Consensus 262 ~YKk---lkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 262 FYKK---LKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHH---HHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeeccccc
Confidence 1111 111111111111 122344555555555555443 233 22 233445566677
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 388 DQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 388 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
|++.+|++.-.+..+ +.|| ..++.--..||.-...++.|+.-|+...+.
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 888888888877776 4564 667777777777777888888888777664
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0018 Score=67.34 Aligned_cols=373 Identities=14% Similarity=0.055 Sum_probs=202.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCC-HHHHHHHHHHHHhCCCh
Q 005127 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDS 108 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~ 108 (713)
-|..+..|+++.|+.+|-+.+... |.+.+.+..-...+.+.|++++|++--.+.. .|+ .-.|+-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 356678899999999999988766 5566666666667777788888876544322 333 45788888888888999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHcCCHHHHHH
Q 005127 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-----DGCAKAGQVAKAFG 183 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~ 183 (713)
++|+..|..-++.. +.+...++-+.+++... ..+.+.|. +...|..+. +.+...-.+..-++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 99999888877653 44566777777776111 01111111 111111111 11111111111111
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH-HHHH------------HHhhhCCCCCCCC----------HHHHHH
Q 005127 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRA-FDVL------------AEMNAEVHPVDPD----------HITIGA 239 (713)
Q Consensus 184 l~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A-~~~~------------~~m~~~~~~~~pd----------~~~~~~ 239 (713)
.+..-... +...+ ...++.+.......+.- ...- ..+... ....-| ..-...
T Consensus 154 ~~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNG-FPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HhhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCC-CCccchhHHHHHHHHhhhHHHH
Confidence 11100000 00000 00111111110000000 0000 000000 000001 112345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHH
Q 005127 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL-------SALID 312 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-------~~li~ 312 (713)
+.++.-+..+++.|.+-+....+.. .+..-++....+|...|.+.++...-....+.|.. ...-| ..+..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 6666777778888888888777665 34445566777788888877777666665555432 11222 22334
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCChh
Q 005127 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLP 391 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~ 391 (713)
+|.+.++++.++..|.+.....-.|+. ..+....+++....+...-. .|+.. -.-.-...+.+.|++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHH
Confidence 666677888888888876655444332 22334445555554444322 23321 1111245677888999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
+|+..|.+++... +-|...|+.-.-+|.+.|.+..|+.-.+..++.
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999888763 336778888888888899988888877777664
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00022 Score=81.47 Aligned_cols=224 Identities=11% Similarity=0.163 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKA---DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 166 (713)
+...|-..+....+.++.+.|.+++++.+.. ++.- -.-.|.++++.-...|.-+...++|+++.+.. -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4567888888888899999999998887753 1111 12356677776666677788889999888752 1244678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH
Q 005127 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (713)
Q Consensus 167 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~ 246 (713)
.|...|.+...+++|.++|+.|.++ +......|...+..+.+..+-+.|..++.+....- +-.-......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 8889999999999999999999876 33567788888888888888888888888877531 111123445556667788
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC
Q 005127 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGK 319 (713)
Q Consensus 247 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~ 319 (713)
.|+.++++.+|+...... +--...|+..|+.-.+.|+.+.+..+|++....++.|-. +.|...+..=-..|+
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 899999999998877654 334578999999999999999999999998888776532 334444443333344
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00073 Score=68.92 Aligned_cols=213 Identities=11% Similarity=0.011 Sum_probs=127.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005127 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 96 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
..+-..+...++.++|+.+...+++.. +-+..+|+..-.++...+ ++++++..++++.+... .+..+|+..--.+.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHH
Confidence 333344555667777888887777653 223445655555555666 46778888777776642 355566655545555
Q ss_pred cCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc---CC
Q 005127 175 AGQV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQ 249 (713)
Q Consensus 175 ~g~~--~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~---g~ 249 (713)
.|.. ++++.+++++.+.. +-|..+|+....++.+.|+++++++.++++.... ..|..+|+....++.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhcccccc
Confidence 5542 56677777777654 4466777777777777777788888777776531 33445555555444443 22
Q ss_pred H----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 250 V----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (713)
Q Consensus 250 ~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 316 (713)
. +++......+.... +.+...|+-+...+... +...+|.+.+.+....++. +...+..|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 2 34555555555544 44566777666666652 3334566666666554432 55566666666654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.002 Score=61.95 Aligned_cols=187 Identities=13% Similarity=0.088 Sum_probs=122.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHH-HHHHHhCCC
Q 005127 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML-MSVCASSKD 107 (713)
Q Consensus 31 ~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l-i~~~~~~g~ 107 (713)
+.-.|++..++.+|++++..-.+.. |.+..-...+...+....++..|-..++++. .|...-|... ...+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 3447899999999999999888776 5566666666666667778888888888764 3444444322 344566788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005127 108 SEGAFQVLRLVQEAGLKADCKLYTTLITT--CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 185 (713)
+..|+.+...|... |+...-..-+.+ ....+++..+..+.++.... -+..+.+.......+.|+++.|.+-|
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHH
Confidence 88888888877642 221111111222 22457777788887777632 23444444444556788899998888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 005127 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (713)
Q Consensus 186 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (713)
....+-+--.....||.-+ +..+.|+.+.|++...++...
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh
Confidence 8877654344467777555 445667888888888877654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00061 Score=72.66 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=49.0
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005127 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (713)
+......+.+|+.+++.+..... -.--|..+.+.|+..|+++.|.++|.+.- .++-.|.+|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 33444555555555555444321 11224444555555555555555554331 13344555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (713)
Q Consensus 181 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 221 (713)
|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 555543332 222233333333333444455555555543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00051 Score=78.60 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH
Q 005127 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (713)
Q Consensus 196 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-----d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 270 (713)
....|-.-|.-..+.++.++|.+++++.... +.+ -.-.|.++++.-..-|.-+...++|++..+..- .-.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t---IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT---INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYT 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh---CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHH
Confidence 4566777777778888888888888887652 211 134677777777777777888888888877531 235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGAC 349 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~ 349 (713)
+|..|...|.+.+.+++|.++|+.|.+.-- -....|...+..+.+..+-+.|..++.+..+.-.+ -.+....-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 788888888888889999999988887522 35677888888888888888888888887765211 1345566667777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 005127 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (713)
.++|+.+.++.+|+.....- +.-...|+.+|..-.++|+.+.+..+|++.+..++.|-. +.|.-.|..-...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 88999999999999887642 345678999999999999999999999999988877743 455555554444555333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0033 Score=69.86 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005127 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (713)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 278 (713)
.|+.+..+-.+.|.+.+|.+-|-+. .|...|.-+++...+.|.+++-.+.+....+..-.| .+=+.||-+
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~A 1175 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFA 1175 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHH
Confidence 3444444444444444444444321 123344444555555555555444444443333222 122344444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (713)
Q Consensus 279 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 358 (713)
|++.++..+..+++. .||......+.+-|...+.++.|.-+|.. +.-|..|...+...|+++.|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 444444443333221 23444444444444444444444444432 22344444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (713)
Q Consensus 359 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (713)
..--++. .+..||-.+-.+|...+.+.-| +|....+..-..-..-++.-|...|-+++.+.+++
T Consensus 1240 VD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 4433222 2344454444444443332211 12211122223334445555555555555555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00013 Score=76.35 Aligned_cols=216 Identities=14% Similarity=0.130 Sum_probs=143.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHhCCChH
Q 005127 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASSKDSE 109 (713)
Q Consensus 33 ~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 109 (713)
-.|+++|.+.+|.-.|+...+++ |.+......++..-...++-..|+..+.+ +.+.|....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 35678888999999999999887 77776666666666555555555555554 34556667777777788888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-----------HHHHHcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCC
Q 005127 110 GAFQVLRLVQEAGLKADCKLYTTLI-----------TTCAKSGKVDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQ 177 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~ 177 (713)
.|+..++.-++...+ |..+. ..+.....+....++|-++.. .+..+|..++..|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 888888766554311 00000 011111223344555555543 3434677777777777888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 005127 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREV 256 (713)
Q Consensus 178 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~ 256 (713)
+++|++.|+..+... +-|...||-|-..++...+.++|..-|.+..+ +.|. +.+...|.-.|...|.+++|.+.
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 888888888887663 44567788888888888888888888888765 3555 33444455567788888888777
Q ss_pred HHHH
Q 005127 257 YKMI 260 (713)
Q Consensus 257 ~~~m 260 (713)
|-..
T Consensus 521 lL~A 524 (579)
T KOG1125|consen 521 LLEA 524 (579)
T ss_pred HHHH
Confidence 7544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.3e-05 Score=80.03 Aligned_cols=212 Identities=14% Similarity=0.066 Sum_probs=96.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005127 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (713)
Q Consensus 132 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 211 (713)
.+...+.+.|-...|..+|+++. .|.-.|.+|+..|+..+|..+..+-.++ +||...|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 34444555555555555555443 2444455555555555555555555442 455555555555554444
Q ss_pred CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005127 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (713)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 291 (713)
-+++|.++++..... +-..+.....+.++++++.+.|+.-.+.+ +....+|-....+..+.++++.|.+.
T Consensus 472 ~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 455555555443221 00011111122344555555554433332 22334444444444455555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 292 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
|..-....+. +...|+.+-.+|.+.++..+|...+.+..+.+ .-+..+|-..+....+.|.+++|.+.+.++.
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 5444433221 33345555555555555555555555544444 2233344444444444455555544444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0021 Score=71.44 Aligned_cols=182 Identities=11% Similarity=0.050 Sum_probs=130.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHH
Q 005127 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (713)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 114 (713)
..+...|+..|-+..+.+ +.-......++.+++.-.+...|.+.|+... ..+..++......|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 445778888888877766 4445556667888877778888888888653 56777888999999999999999998
Q ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005127 115 LRLVQEAGL-KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193 (713)
Q Consensus 115 ~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 193 (713)
.-..-+... ..-...|....-.|...++...|...|+...+.. +.|...|..+..+|..+|++..|+++|.+....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 433322210 0011223334445667788999999999988775 347889999999999999999999999988765
Q ss_pred CCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhhh
Q 005127 194 KPDRVVFNA--LITACGQSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 194 ~pd~~~~~~--li~~~~~~g~~~~A~~~~~~m~~ 225 (713)
.|+ .+|.. ....-+..|.+.+|...+.....
T Consensus 626 rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 343 23332 22345667889999888877654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00015 Score=75.75 Aligned_cols=221 Identities=13% Similarity=0.066 Sum_probs=148.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (713)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (713)
+.+.|++.+|.-.|+....+. +-+...|.-|....+..++-..|+..+.+..+.+ +.+..+.-.|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 456677777777777666541 3345677777777777777777777777777766 556677777777788888777
Q ss_pred HHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 287 FACSVYDDMTKKGVI--------PDEVFLSALIDFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNWQK 357 (713)
Q Consensus 287 ~A~~l~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~ 357 (713)
.|++.++.-....++ ++..+-.. ........+.+..++|-++. ..+..+|+.+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888877776543211 00000000 11112222334445554444 34545777788888888888889999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 358 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
|.+.|+...... +-|...||-|-..++...+.++|+..|.+.++ ++|+- ....-|.-+|...|.+++|...|=..+
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999998887653 33567899999999998999999999998887 57764 344445668888899998888775543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0015 Score=66.69 Aligned_cols=209 Identities=7% Similarity=0.000 Sum_probs=133.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 005127 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA- 212 (713)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~- 212 (713)
..+...++.++|+.+.+++++.. +-+..+|+.--.++...| .+++++..++++.+.. +.+..+|+.-...+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445578889999999988763 224456776666666667 5789999998888764 3455667655545555555
Q ss_pred -HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCH---
Q 005127 213 -VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---GDW--- 285 (713)
Q Consensus 213 -~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~--- 285 (713)
.++++.+++.+... -+.|..+|+...-++.+.|+++++.+.++.+.+.+ +.+..+|+.....+.+. |..
T Consensus 123 ~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 123 AANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccccc
Confidence 26677788777653 23456778877777888888888888888888877 44556776665555443 222
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 286 -EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 286 -~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
++++....++....+. |...|+-+...+... +...+|...+.+..+.+ ..+......|++.|+.
T Consensus 199 ~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3556666566655443 556666666666552 33445666666655533 3345566666666664
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00026 Score=76.03 Aligned_cols=215 Identities=12% Similarity=0.053 Sum_probs=148.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005127 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (713)
Q Consensus 96 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (713)
-.+...+...|-...|..+|+++. .|..+|.+|...|+..+|..+..+-.+. +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 345566777778888888887665 4556777788888888887777776663 67777788877777776
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005127 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (713)
Q Consensus 176 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~ 255 (713)
.-+++|.++++....+ .-..+.....+.+++.++.+.|+.-.... + --..+|-.+..+..+++++..|.+
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-p--lq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-P--LQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-c--cchhHHHhccHHHHHHhhhHHHHH
Confidence 7778888877765322 11122222334677888888777655431 2 234477777777778888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 256 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
.|....... +.+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|..-+....+.|.+++|++.+.++...
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 887776654 456678888888888888888888888888777633 4455666666677888888888888776543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00023 Score=70.05 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=29.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 275 AINCCSQTGDWEFACSVYDDMTKKGV-IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 275 li~~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
+...|.+.|++++|+..|+....... .| ....+..+..++.+.|+.++|..+++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33445555555555555555554321 11 234455555555556666666555555543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00023 Score=70.06 Aligned_cols=187 Identities=10% Similarity=-0.017 Sum_probs=126.7
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--H
Q 005127 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--H 163 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~ 163 (713)
......+..+...+...|+++.|...|+.+.... +.+. .++..+..++.+.|++++|...|+++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677778888889999999999999887753 2222 46677888888999999999999998876422111 2
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH
Q 005127 164 TYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (713)
Q Consensus 164 ~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~ 234 (713)
++..+..++.+. |+.++|.+.|+.+... .|+. ..+..+..... ... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~---------- 166 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA---------- 166 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH----------
Confidence 444455555544 6788888888888766 3332 22222211100 000 000
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 235 ITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
.....+...|.+.|++++|...|+...+... +.....+..+..++.+.|++++|...++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112456678899999999999998876532 234678889999999999999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0017 Score=61.59 Aligned_cols=139 Identities=12% Similarity=0.133 Sum_probs=74.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005127 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193 (713)
Q Consensus 114 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 193 (713)
+.+.+.......+......-...|...+++++|++...... +......=+..+.+..+++-|.+.+++|.+-.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 33444444334443444444455666666666666655421 22223233344555666666666666666442
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005127 194 KPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (713)
Q Consensus 194 ~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 264 (713)
+..|.+.|..++.+ .+.+.+|.-+|++|.. ...|+..+.+-...++...|++++|..+++......
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 44555555555443 2446666666666653 245566666666666666666666666666665554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.006 Score=63.67 Aligned_cols=353 Identities=12% Similarity=0.088 Sum_probs=192.4
Q ss_pred HHHhhHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhH
Q 005127 70 VCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDA 145 (713)
Q Consensus 70 ~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~ 145 (713)
...+.|+++.|+.+|-. +.++|.+.|..-..+|+..|++++|++=-.+-.+. .|+ ...|+....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 45567889999999875 34678888998899999999999988766666554 555 6688888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHH--HHhCCCCCCH--------HHHHHHHHHHHhc----
Q 005127 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF-GAYGI--MRSKNVKPDR--------VVFNALITACGQS---- 210 (713)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~--m~~~g~~pd~--------~~~~~li~~~~~~---- 210 (713)
|+.-|.+-.+.. +.|...++-+..++ ..+.+. +.|.. |. .++.-++ ..|..++..+-+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~-~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFTKPYFH-EKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhccCcHHH-HHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 999999887764 33566677777776 111111 11110 00 0001111 1122222222111
Q ss_pred ---CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc-CCHH----HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHh
Q 005127 211 ---GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA-GQVD----RAREVYKMIHK-YNIKGTPEVYTIAINCCSQ 281 (713)
Q Consensus 211 ---g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~-g~~~----~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~ 281 (713)
.+.+...+....+... ... .+...-...... ..+. .......++.+ ....--..-...+.++..+
T Consensus 163 ~~~l~d~r~m~a~~~l~~~----~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGV----DEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred hcccccHHHHHHHHHHhcC----ccc--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 0011111111111000 000 000000000000 0000 00000000000 0000001224567777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C----HHHHHHHHHHHHhcCCH
Q 005127 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--G----IISYSSLMGACSNAKNW 355 (713)
Q Consensus 282 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~----~~~~~~li~~~~~~g~~ 355 (713)
..+++.|++-+....+.. -+..-++....+|...|.+.+....-....+.|-.. + ...+..+..+|.+.+++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 888999999998888775 255556666677888888777766666555554211 0 11222344477778889
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHH
Q 005127 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSILLVACERKDDVEVGLMLLSQ 434 (713)
Q Consensus 356 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~ 434 (713)
+.|...|.+.....-.||.. .+....+++++......- +.|.... ...=.+.+.+.|++..|+..+.+
T Consensus 315 ~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999998876543343332 223445555555544433 3454321 22225778899999999999999
Q ss_pred HHHCCCCCCH-HHHHHHH
Q 005127 435 AKEDGVIPNL-VMFKCII 451 (713)
Q Consensus 435 m~~~g~~p~~-~~~~~li 451 (713)
+++.. |+. ..|+---
T Consensus 384 AIkr~--P~Da~lYsNRA 399 (539)
T KOG0548|consen 384 AIKRD--PEDARLYSNRA 399 (539)
T ss_pred HHhcC--CchhHHHHHHH
Confidence 99864 544 4444433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.016 Score=60.48 Aligned_cols=424 Identities=11% Similarity=0.117 Sum_probs=260.3
Q ss_pred chhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHHHH
Q 005127 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (713)
Q Consensus 26 ~~~~~~~~~L~---~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~ 100 (713)
.-++.+|..|+ +..-++++.+.++++... +|....+....++.-...++++....+|.+.. .-++..|...|+
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 56788999998 456899999999999864 46665555555666666788899999987643 456777887776
Q ss_pred HHHh-CCChHH----HHHHHHHH-HHcCCCCCH-HHHHHHHHH---------HHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 005127 101 VCAS-SKDSEG----AFQVLRLV-QEAGLKADC-KLYTTLITT---------CAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (713)
Q Consensus 101 ~~~~-~g~~~~----A~~l~~~m-~~~g~~pd~-~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 164 (713)
--.+ .++... -.+.|+.. .+.|+.+-. ..|+.-+.. +....+++..+++|.++....+.-=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 5433 233322 23344433 344544322 234444433 3344567778888888876432211122
Q ss_pred HH------HHHHHH-------HHcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHhcCC--
Q 005127 165 YG------ALIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSGA-- 212 (713)
Q Consensus 165 ~~------~li~~~-------~~~g~~~~A~~l~~~m~~--~g~~pd~~~---------------~~~li~~~~~~g~-- 212 (713)
|+ .=|+-. -+...+..|.++++++.. +|+..+..+ |-.+|.-=-.++.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 22 111111 123456778888877753 343222222 4444433221111
Q ss_pred ----H--HHHHHHHHHhhhCCCCCCCCHHHH-HHHH----HHHHHcCC-------HHHHHHHHHHHHhcCCCCCHHHHHH
Q 005127 213 ----V--DRAFDVLAEMNAEVHPVDPDHITI-GALM----KACANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTI 274 (713)
Q Consensus 213 ----~--~~A~~~~~~m~~~~~~~~pd~~~~-~~ll----~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~ 274 (713)
. ....-.+++...- .+..|++.-. ...+ +.+...|+ -+++..+++.....-..-+...|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1111122222211 1334443221 1111 23333443 5778888887666544444556655
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 005127 275 AINCCSQT---GDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (713)
Q Consensus 275 li~~~~~~---g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~ 349 (713)
+.+.--.. ...+.....+++++.. ...|+ .+|...+....+..-+..|..+|.+..+.+..+ ++.++++++..|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 55432222 2367777788877664 33443 568888888888999999999999999987776 889999999977
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 005127 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (713)
| .++.+-|.++|+--.+. +.-+..--+..+.-+...++-..|..+|++....++.|+. ..|..+|.--+.-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 6 56788999999864433 1223444466777788889999999999999988777764 689999999999999999
Q ss_pred HHHHHHHHHHC-C--CCCCHHHHHHHHHHHH
Q 005127 428 GLMLLSQAKED-G--VIPNLVMFKCIIGMCS 455 (713)
Q Consensus 428 a~~~~~~m~~~-g--~~p~~~~~~~li~~~~ 455 (713)
..++-+++... . ..|..-+-..+++.|+
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~ 521 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYG 521 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHh
Confidence 99998887653 2 3333334445555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.014 Score=60.54 Aligned_cols=218 Identities=13% Similarity=0.050 Sum_probs=144.2
Q ss_pred HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (713)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (713)
+.++...-+.+......-.|+...+...+.+......-..+...+.+..+. .....+--..-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHH
Confidence 444454555554433233455555555555444333333333333332221 11233333344556778889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005127 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (713)
Q Consensus 293 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 371 (713)
+.+...-.. |...+....+.+...++.++|.+.++.+.... |+ ....-.+..+|.+.|++.+|..+++...... +
T Consensus 330 ~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p 405 (484)
T COG4783 330 QPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-P 405 (484)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-C
Confidence 998776443 66677777788889999999999999888764 43 6667778888999999999999888876543 5
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHH
Q 005127 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED--GVIPNLVMFKC 449 (713)
Q Consensus 372 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ 449 (713)
-|...|..|..+|...|+..+|....-+ ++...|+++.|...+....+. ...|+-.-+..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~da 467 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADA 467 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 5788899999999999988888766544 355678888888888877764 33566666666
Q ss_pred HHHHHH
Q 005127 450 IIGMCS 455 (713)
Q Consensus 450 li~~~~ 455 (713)
.|+...
T Consensus 468 ri~~~~ 473 (484)
T COG4783 468 RIDQLR 473 (484)
T ss_pred HHHHHH
Confidence 666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0029 Score=60.86 Aligned_cols=187 Identities=13% Similarity=0.076 Sum_probs=86.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHH
Q 005127 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCAKAGQVAK 180 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~ 180 (713)
+.+..++..|++++..-.++. +.+....+.|..+|....++..|-..|+++... .|...-|.. -...+-+.+.+..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHH
Confidence 344445555555555544442 224444555555555555566666666555543 233322221 1223334555556
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005127 181 AFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (713)
Q Consensus 181 A~~l~~~m~~~g~~pd~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (713)
|+++...|... |+...-..-+.+ ....+++..+..+.++...+ .+..+.+.......+.|+++.|.+-|+
T Consensus 97 ALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 97 ALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHHHHHHHHH
Confidence 66665555432 111111111111 22345555555555554321 122233333334455666666666666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005127 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (713)
Q Consensus 259 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 300 (713)
...+.+--.....||.-+. ..+.|+++.|++...++.+.|+
T Consensus 169 aAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 5555432223344544432 3344556666666666655554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00073 Score=64.05 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhCCC--hhHHHHHHHHHHHCCCCC-CHHHHH
Q 005127 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQ--LPKTMEVLSDMKSLGLCP-NTITYS 413 (713)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~l~~~m~~~g~~p-~~~t~~ 413 (713)
|...|..|...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+. .| +...+.
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~ 148 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALM 148 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHH
Confidence 34444444444444444444444444444332 12333344333332 33333 24444444444442 22 233333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 414 ILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
.+..++...|++++|...++++.+
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00079 Score=63.93 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=79.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005127 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (713)
Q Consensus 100 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (713)
..+...|+-+.+..+....... .+.|.......+....+.|++..|...|.+..... ++|..+|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3444445555444444443221 12334444445555555566666666665555433 345555666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005127 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (713)
Q Consensus 180 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~ 259 (713)
.|..-|.+..+.- .-+...+|.|.-.+.-.|+.+.|..++...... -..|..+-..+.-.....|++++|.++-..
T Consensus 152 ~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 152 EARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666555555441 223444555555555556666666655555432 122444555555555556666666555543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=6e-06 Score=53.59 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005127 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (713)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00096 Score=63.24 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHH
Q 005127 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAFE 325 (713)
Q Consensus 249 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~--~~~a~~ 325 (713)
+.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444444333 334444555544555555555555555444444322 33333333333 233333 244444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005127 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 326 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
++++..+.+ +.+..++..+...+.+.|++++|...|+++.+
T Consensus 132 ~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444443 22334444444444444444444444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.001 Score=74.84 Aligned_cols=236 Identities=10% Similarity=0.093 Sum_probs=159.2
Q ss_pred CHHHHHHHHHHHHHcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005127 126 DCKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (713)
Q Consensus 126 d~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 204 (713)
++...+.+=.+.+..|..++| .+++.+..+ ++....+-....+++.-...... ....+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 344444444455566666665 456665553 23333333333333322222222 2355688888899
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 005127 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (713)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 283 (713)
....+.|.+++|..+++.... +.|| ......+...+.+.+++++|...++.....+ +.+......+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Confidence 999999999999999999875 3566 4566677888999999999999999998876 667788888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 363 (713)
++++|..+|++....+.. +..++..+..++...|+.++|...|....+.- .+...-|+.++ +++..-..+++
T Consensus 169 ~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 169 QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHH
Confidence 999999999999985443 57788888899999999999999999887763 34455565554 23344445555
Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHhC
Q 005127 364 HMKSI----KLKPTVSTMNALITALCDG 387 (713)
Q Consensus 364 ~m~~~----~~~p~~~~~~~li~~~~~~ 387 (713)
.+.-. |..-.+.+...+|.-|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 55422 2222334455555555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0015 Score=62.02 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 315 (713)
.....+....+.|++..|...|++..... ++|...|+.+.-+|.+.|++++|..-|.+..+.... +...++.+.-.+.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHH
Confidence 33334444444455555555554444433 444444555555555555555555444444443222 2233344444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 362 (713)
-.|+++.|..++......+ .-|..+-..|.-.....|++++|.++-
T Consensus 180 L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 4445555554444444332 223344444444444455555544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0014 Score=70.97 Aligned_cols=60 Identities=15% Similarity=0.313 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHH--HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005127 89 NPTLSTFNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (713)
Q Consensus 89 ~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (713)
+-|..|--.+++ .|...|+.+.|.+-.+.++ ...+|..+.++|.+..++|-|.-.+..|.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 445555555543 2455566665555544332 34456666666666666666555555553
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0039 Score=71.08 Aligned_cols=140 Identities=11% Similarity=0.021 Sum_probs=94.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHH
Q 005127 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (713)
Q Consensus 33 ~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 112 (713)
+.+...+++++|+++.+...+.. |....++...+-++.+.++.++|..+ .++.......++....
T Consensus 39 ~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 39 DAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVE 103 (906)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccchhHHH
Confidence 33448999999999999777765 55544444444455555554444333 4444444555554444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 113 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
.+...|... .-+..++..+..+|-+.|+.++|..+|+++.+.. +-|..+.|-+...|+.. ++++|.+++.+....
T Consensus 104 ~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 104 HICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 455555553 3344577778888888888888888888888876 44777888888888888 888888888777643
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0099 Score=66.36 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCC---CH--HHHHHHHHHHHhCCChHHHHH
Q 005127 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---TL--STFNMLMSVCASSKDSEGAFQ 113 (713)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--~~~~~li~~~~~~g~~~~A~~ 113 (713)
.+...|.+.|+...+.+ +.+......+...+.....++.|....-...+. -. ..|-...-.+.+.++...|..
T Consensus 506 ~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 506 DDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred HHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHH
Confidence 35667888888877665 445555556667777777777777663322211 11 122233334666777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 005127 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA--LIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 114 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~ 189 (713)
-|+...+.. +.|...|..+..+|..+|++..|.++|++.... .|+. +|.. ....-+..|.+.+|+..+....
T Consensus 584 ~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 584 EFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777777654 446667778888888888888888888776654 2322 2221 1223345667777776666554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0044 Score=70.63 Aligned_cols=239 Identities=8% Similarity=0.034 Sum_probs=133.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005127 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (713)
+.+...|..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 456677888888888888888888888866654 3432 2333333356666665555444 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc
Q 005127 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~ 247 (713)
+++......++.-+..++..|... .-+...+..+..+|-+.|+.++|..+++++..-. +-|..+.|.+...|+..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh
Confidence 223333333343333333444433 2244466677777777777888877777777532 34566777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (713)
Q Consensus 248 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 327 (713)
++++|..++...... |...+++..+.++|.++....+. |...+..++
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~---------------- 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE---------------- 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------
Confidence 777777777665543 44555666777777776665332 211211111
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005127 328 QEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (713)
Q Consensus 328 ~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 385 (713)
+.+... |..--+.++-.|-..|-+..+++++..+++.+.+.. +.|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 111111 112223344445555566666666666666665543 234444555555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0035 Score=64.74 Aligned_cols=114 Identities=14% Similarity=0.038 Sum_probs=55.7
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
...|.+++|+..++.+... .+.|..-.....+.+.+.++.++|.+.++.+.... +.....+-.+..+|.+.|++.+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 3445555555555555432 12223333334455555555555555555555443 2224444455555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005127 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (713)
Q Consensus 288 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 326 (713)
|..+++........ |...|..|..+|...|+..++...
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHH
Confidence 55555555444332 445555555555555555444433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00058 Score=61.12 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005127 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
+..+...+...|++++|...|+...... +.+..+|..+..++.+.|++++|...|+...... +.+..++..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344455556666666666666665543 3355556666666666666666666666666543 2355556666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 005127 175 AGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~ 191 (713)
.|++++|+..|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00066 Score=60.80 Aligned_cols=89 Identities=11% Similarity=-0.008 Sum_probs=37.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChh
Q 005127 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 391 (713)
.++...|++++|...|....... +.+...+..+..++.+.|++++|...|+...+.. +.+...+..+..++...|+.+
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 33344444444444444444332 2233444444444444444444444444444322 223334444444444444444
Q ss_pred HHHHHHHHHHH
Q 005127 392 KTMEVLSDMKS 402 (713)
Q Consensus 392 ~A~~l~~~m~~ 402 (713)
+|+..|+...+
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0052 Score=69.31 Aligned_cols=234 Identities=12% Similarity=0.102 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHhCCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAF-QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
+.....+=.+.+..|..++|- +++.++. .++...+......+++.-....... +..+...+-.|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHH
Confidence 333444444566666666653 3333322 3444444444444444333333332 3557889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcC
Q 005127 171 GCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAG 248 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g 248 (713)
...+.|.+++|..+++...+. .|| ......+...+.+.+++++|+..+++.... .|+ ......+..++.+.|
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~----~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG----GSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999887 455 556777889999999999999999998863 454 556677778899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (713)
Q Consensus 249 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 328 (713)
++++|..+|+++...+ +.+..++..+...+...|+.++|...|+......- |-...|+..+ +++..-...++
T Consensus 169 ~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 169 QSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred chHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHHH------HHHHHHHHHHH
Confidence 9999999999999843 55688999999999999999999999999876522 3334444443 23333444555
Q ss_pred HHHHC----CCCCCHHHHHHHHHHHHhc
Q 005127 329 EAKNQ----GISVGIISYSSLMGACSNA 352 (713)
Q Consensus 329 ~m~~~----g~~~~~~~~~~li~~~~~~ 352 (713)
.+.-. |....+.+....|.-|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 54333 3333445555555555444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.6e-05 Score=51.24 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 005127 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (713)
+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0068 Score=57.71 Aligned_cols=153 Identities=14% Similarity=0.071 Sum_probs=88.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 005127 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-- 351 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 351 (713)
.-...|++.|++++|++...... +......=+..+.+..+.+.|.+.++.|.+-. +..+.+.|..++.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la 183 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLA 183 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHh
Confidence 33445666666666666655411 12222222333445566666666666666542 34555555555443
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-H
Q 005127 352 --AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV-G 428 (713)
Q Consensus 352 --~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~-a 428 (713)
.+.+.+|.-+|++|.++ ..|+..+.|-+..++...|++++|..++++..... .-+..|...++.+-...|...+ -
T Consensus 184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHH
Confidence 34567777777777653 35777777777777777777777777777776653 2345566666655556665543 3
Q ss_pred HHHHHHHHH
Q 005127 429 LMLLSQAKE 437 (713)
Q Consensus 429 ~~~~~~m~~ 437 (713)
.+.+.+++.
T Consensus 262 ~r~l~QLk~ 270 (299)
T KOG3081|consen 262 ERNLSQLKL 270 (299)
T ss_pred HHHHHHHHh
Confidence 344555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.3e-05 Score=50.79 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 005127 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 196 (713)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00094 Score=59.13 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=37.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChh
Q 005127 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 391 (713)
..+...|++++|...++.+...+ +.+...+..+...|.+.|++++|...|+...+.. +.+...+..+...|...|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHH
Confidence 33444444444444444443332 2233444444444444444444444444443322 223333334444444444444
Q ss_pred HHHHHHHHHHH
Q 005127 392 KTMEVLSDMKS 402 (713)
Q Consensus 392 ~A~~l~~~m~~ 402 (713)
+|++.|++..+
T Consensus 103 ~A~~~~~~al~ 113 (135)
T TIGR02552 103 SALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.11 Score=57.99 Aligned_cols=224 Identities=10% Similarity=0.007 Sum_probs=133.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhCCChHHH
Q 005127 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 111 (713)
++..+++..|++...++.++- |+....-.+-.-...+.|+.++|...++.. ...|..|...+-..|...++.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 457788888888888888875 433222222222345667788888777653 234777888888888888888999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHH
Q 005127 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------VAKA 181 (713)
Q Consensus 112 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A 181 (713)
..++++..+. -|+......+..+|.+.+++.+-.++--+|.+. .+.+.+.+=++++.+.+.-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 8888888765 566777777788888877765543333333332 23345555555665554321 3456
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005127 182 FGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (713)
Q Consensus 182 ~~l~~~m~~~g-~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m 260 (713)
.+.++.+.+.+ -.-+..-...-...+-..|.+++|.+++..-.... -...+...-+--++.+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66666666553 11122222222334456677888888874322221 12233334445566667777777766666666
Q ss_pred HhcC
Q 005127 261 HKYN 264 (713)
Q Consensus 261 ~~~~ 264 (713)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 6655
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.6e-05 Score=49.53 Aligned_cols=33 Identities=45% Similarity=0.794 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005127 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (713)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 195 (713)
.+|+++|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355566666666666666666666665555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0017 Score=57.41 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 208 (713)
....+...+...|++++|.+.|+.+...+ +.+...|..+...|.+.|++++|..+|++....+ +.+...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34444455555555666665555555443 2244555555555555566666665555554442 334444555555555
Q ss_pred hcCCHHHHHHHHHHhhh
Q 005127 209 QSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 209 ~~g~~~~A~~~~~~m~~ 225 (713)
..|++++|.+.|+....
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55666666665555543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.4e-05 Score=47.86 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 005127 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (713)
+||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00076 Score=70.51 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005127 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (713)
Q Consensus 303 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 380 (713)
+...+..++..+....+++.+..++...... ....-..|..++|..|.+.|..+++..++..=...|+-||..|+|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555555555555555555555555443 11122233345566666666666666665555555666666666666
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (713)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (713)
|..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666665555555555555555555444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=68.95 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 005127 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (713)
Q Consensus 194 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 273 (713)
+.+.+....+++.+....+++.+..++.+.........--..|..+++..|.+.|..+.+..+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33445555555555555555666665555544322221222334466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 317 (713)
.||+.+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666655555544555555555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.22 Score=55.58 Aligned_cols=222 Identities=12% Similarity=0.057 Sum_probs=154.4
Q ss_pred hHHHHHHHHHhhhCC--CCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005127 74 QKAIKEAFRFFKLVP--NPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (713)
Q Consensus 74 ~~~~~~A~~~~~~~~--~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 149 (713)
.+++..|+.....+. .||. .|...+.+ ..+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 456677777666543 3554 34445554 56889999999999888776644 888999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHH
Q 005127 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA----------VDRAFDV 219 (713)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~----------~~~A~~~ 219 (713)
|+..... .|+......+..+|++-+++.+-.++=-+|-+. ++-+.+.|-++++.+.+.-. ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9999876 677888888999999988876544444444332 34456666677776665421 3456666
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 220 ~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
++.+.... |---+..-.-.-+......|++++|.+++. ...+.-...+...-+.-+..+...++|.+..++-.++...
T Consensus 177 ~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 177 VQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 77776653 322222222233445677889999999994 4444444445566677788888889999888888888887
Q ss_pred CCC
Q 005127 299 GVI 301 (713)
Q Consensus 299 g~~ 301 (713)
|..
T Consensus 256 ~~D 258 (932)
T KOG2053|consen 256 GND 258 (932)
T ss_pred CCc
Confidence 653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0042 Score=64.76 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005127 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 353 (713)
+++..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|.+++.+..+.. +.+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555666666666655553 332 2234444444555555555555554332 223444444444455555
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005127 354 NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDM 400 (713)
Q Consensus 354 ~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (713)
+.+.|..+.+++.+. .|+ ..+|..|..+|.+.|++++|+..++.+
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555443 232 235555555555555555555544443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0041 Score=64.83 Aligned_cols=124 Identities=16% Similarity=0.117 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 005127 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~ 244 (713)
..+|+..+...++++.|+.+|+++.+.. |+. ...+++.+...++-.+|.+++.+.... .+.|......-...|
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~---~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE---NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 3344555555666777777777766552 432 233555665666666666666666542 122344444444556
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
.+.++++.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666666666543 3344566666666666666666666666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0001 Score=46.16 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005127 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 192 (713)
+||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0015 Score=53.56 Aligned_cols=76 Identities=17% Similarity=0.400 Sum_probs=44.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005127 97 MLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSG--------KVDAMFEVFHEMVNAGIEPNVHTYGA 167 (713)
Q Consensus 97 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (713)
..|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555556777777777777777777 677777777776665542 12234445555555555555555555
Q ss_pred HHHHH
Q 005127 168 LIDGC 172 (713)
Q Consensus 168 li~~~ 172 (713)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0063 Score=54.60 Aligned_cols=124 Identities=16% Similarity=0.159 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH
Q 005127 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR--VVFNALI 204 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~~li 204 (713)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33444444 3566666666666666542 112 122223445566666666666666666665422211 1233345
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005127 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (713)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~ 259 (713)
..+...|++++|+..++..... ......+....++|.+.|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~----~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE----AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc----chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5566666666666666543221 22233444555666666666666666653
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=97.49 E-value=1.7e-05 Score=67.32 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=51.7
Q ss_pred CcccCCCCeeeccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccC----Cc--------cceeccCCchh-hhh
Q 005127 569 CVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPV----EK--------TQIMSVGGEKT-IDI 635 (713)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~----~~--------~~~~~~~~~~~-~~~ 635 (713)
||+|++.+.|+.+|++||+...+ .++...||+|++..++|+ ++ +..+++||||+ +.+
T Consensus 2 ~~~w~~~h~F~sgd~shp~~~~~----------~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiaf 71 (116)
T PF14432_consen 2 GCSWIEVHSFVSGDRSHPQSELI----------NKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAF 71 (116)
T ss_pred CCCccceEEEEeCCCcCccHHHH----------HHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHh
Confidence 78999999999999999998333 345577999999999887 12 34789999998 222
Q ss_pred hhhhhHHHHHHHHHh
Q 005127 636 AERTTQAIAALLRRL 650 (713)
Q Consensus 636 ~~~~~~~v~~~l~~~ 650 (713)
. -+..+|++||+|+
T Consensus 72 g-li~~~vvkn~~Rv 85 (116)
T PF14432_consen 72 G-LINTRVVKNLKRV 85 (116)
T ss_pred c-ccceeEEecCCcc
Confidence 1 1222777777443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.1 Score=49.65 Aligned_cols=116 Identities=10% Similarity=0.117 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 005127 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (713)
Q Consensus 318 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 397 (713)
|.+++|.++++.+.+.+ +.|..++-.=+.+.-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.+
T Consensus 100 ~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 34444444444444333 223333333333333333333444433333322 1345555555555555555555555555
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 005127 398 SDMKSLGLCP-NTITYSILLVACER---KDDVEVGLMLLSQAKE 437 (713)
Q Consensus 398 ~~m~~~g~~p-~~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~ 437 (713)
++|.- +.| ++..|..+...+.- ..+++-++++|.+..+
T Consensus 178 EE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 178 EELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55544 234 33333333333322 2234456666666665
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.1 Score=49.53 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (713)
Q Consensus 283 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 362 (713)
|++++|.++++.+.+.+.. |.+++-.=+...-..|+--+|++-+....+. +..|...|.-|.+.|...|++++|.-.+
T Consensus 100 ~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3344444444444433321 3333333333333333333343333333332 2334444444444444444444444444
Q ss_pred HHHH
Q 005127 363 EHMK 366 (713)
Q Consensus 363 ~~m~ 366 (713)
+++.
T Consensus 178 EE~l 181 (289)
T KOG3060|consen 178 EELL 181 (289)
T ss_pred HHHH
Confidence 4443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.007 Score=54.31 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=7.8
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 005127 344 SLMGACSNAKNWQKALELY 362 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~ 362 (713)
...+.|.+.|+.++|...|
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 3334444444444444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0033 Score=51.62 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVV 199 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~pd~~~ 199 (713)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 899999999999887753 34567888999998889999999
Q ss_pred HHHHHHHHHh
Q 005127 200 FNALITACGQ 209 (713)
Q Consensus 200 ~~~li~~~~~ 209 (713)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.065 Score=57.66 Aligned_cols=333 Identities=12% Similarity=0.087 Sum_probs=161.1
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCC--------CHHHHHHHHHHHHHcCChhHHH
Q 005127 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE-AGLKA--------DCKLYTTLITTCAKSGKVDAMF 147 (713)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p--------d~~~~~~li~~~~~~g~~~~A~ 147 (713)
+++|.++.+. +|.+..|..+.......-.++.|+..|-+... .|++. +...-.+=|.+ --|.+++|.
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhh
Confidence 5666666554 56677888888777777777788777755432 12210 00011111222 248889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 005127 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (713)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (713)
++|-+|-++. ..|..+.+.|++-.+.++++.--.. .-..-...|+.+...++....+++|.+.|..-...
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9988886542 3466677777777766665432100 00011345666766666666677777666543210
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005127 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (713)
Q Consensus 227 ~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 306 (713)
...+.++.+..++++-+.+-..+.+ +....-.|..++...|.-++|.+.|-+-- . |
T Consensus 826 -----------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p---- 881 (1189)
T KOG2041|consen 826 -----------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P---- 881 (1189)
T ss_pred -----------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c----
Confidence 1234444444444444433333322 22334444555555555555554443211 0 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--------------HHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 005127 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------------YSSLMGACSNAKNWQKALELYEHMKSI---- 368 (713)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--------------~~~li~~~~~~g~~~~A~~l~~~m~~~---- 368 (713)
...+..|...+++.+|.++-+...- |.+.+ .---|..+.+.|..-.|-+++.+|.+.
T Consensus 882 -kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K 956 (1189)
T KOG2041|consen 882 -KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEK 956 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhc
Confidence 1223334444444444443322110 00000 011244556666655555555555432
Q ss_pred CCCCCH----HHHHHH-HHHH----------HhCCChhHHHHHHHHHHHC-------CCCC--CHHHHHHHHHHHHhcCC
Q 005127 369 KLKPTV----STMNAL-ITAL----------CDGDQLPKTMEVLSDMKSL-------GLCP--NTITYSILLVACERKDD 424 (713)
Q Consensus 369 ~~~p~~----~~~~~l-i~~~----------~~~g~~~~A~~l~~~m~~~-------g~~p--~~~t~~~ll~a~~~~g~ 424 (713)
+.++-. ....++ +.-+ -.+|..++|..+++.-... +.-- ....|..+..--...|.
T Consensus 957 ~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~ 1036 (1189)
T KOG2041|consen 957 YVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGR 1036 (1189)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhch
Confidence 222211 111111 1111 1356667777655443211 0111 22334444444556788
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 005127 425 VEVGLMLLSQAKED-GVIPNLVMFKCII 451 (713)
Q Consensus 425 ~~~a~~~~~~m~~~-g~~p~~~~~~~li 451 (713)
++.|++.--.+.+. .+-|...+|+.|.
T Consensus 1037 v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1037 VKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred HHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 88887765555543 5667777776543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0024 Score=59.20 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------------CCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCD----------------GDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (713)
Q Consensus 353 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (713)
|.++=....+..|.+.|+..|..+|+.|+..+=+ ..+.+-|++++++|...|+.||..|+..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3344444444555555555555555555554432 122344455555555555555555555555
Q ss_pred HHHHhcC
Q 005127 417 VACERKD 423 (713)
Q Consensus 417 ~a~~~~g 423 (713)
+.+++.+
T Consensus 146 ~iFG~~s 152 (228)
T PF06239_consen 146 NIFGRKS 152 (228)
T ss_pred HHhcccc
Confidence 5554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.012 Score=50.52 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=6.3
Q ss_pred HHHhcCCHHHHHHHHHH
Q 005127 206 ACGQSGAVDRAFDVLAE 222 (713)
Q Consensus 206 ~~~~~g~~~~A~~~~~~ 222 (713)
.+.+.|+++.|.+.|+.
T Consensus 48 ~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 48 AYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHhhccHHHHHHHHHH
Confidence 33333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0052 Score=57.07 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 005127 89 NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 163 (713)
..|-.+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3455566666665543 35566666677777777777777778777777654 2221 111222111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005127 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 212 (713)
.-| -.+.+-|++++++|...|+-||..++..|+..+++.+.
T Consensus 113 ------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 011 12445677778888888888888888888877776554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.016 Score=49.56 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHH
Q 005127 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK--GTPEVYTIAIN 277 (713)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~ 277 (713)
+..+...+.+.|++++|.+.|..+.....+-......+..+..++.+.|+++.|...|+.+...... ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444555555666666666666655421110111223444555566666666666666655543211 12344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 005127 278 CCSQTGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~g 299 (713)
++.+.|++++|...++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 5556666666666666655553
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0085 Score=48.28 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=37.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005127 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (713)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 212 (713)
+...+...|++++|..+|++..+.. +.+...+..+...+...+++++|.+.|....... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3333444444444444444444332 1122334444444444444444444444444332 2222344444444444444
Q ss_pred HHHHHHHHHHh
Q 005127 213 VDRAFDVLAEM 223 (713)
Q Consensus 213 ~~~A~~~~~~m 223 (713)
.+.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.011 Score=47.67 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=7.6
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 005127 344 SLMGACSNAKNWQKALELYE 363 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~~ 363 (713)
.+...+...|+.+.|...+.
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33333333333333333333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.013 Score=59.00 Aligned_cols=142 Identities=12% Similarity=0.084 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 384 (713)
+|..++..+-+.+..+.|..+|.+..+.+ ..+..+|-....+-.. .++.+.|.++|+...+. +..+...|...+.-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666666432 2222333333333222 34455577777666543 244556666666666
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 385 CDGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (713)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 452 (713)
...++.+.|..+|++.... +.++. ..|...+.--.+.|+++....+.+++.+. .|+......+++
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 6777777777777766653 22222 36777777777777777777777777663 344333333443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.74 Score=49.97 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=31.6
Q ss_pred HHHHHHHH--HHHHhCCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 374 VSTMNALI--TALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVE 426 (713)
Q Consensus 374 ~~~~~~li--~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~ 426 (713)
...|..|| .-....|..+.|++.--.+.+ ..+-|-...|+.+.-+.+....+.
T Consensus 1019 AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1019 AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFG 1074 (1189)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhh
Confidence 33444444 445567899999887555543 346677777877665544443333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.015 Score=58.61 Aligned_cols=130 Identities=15% Similarity=0.239 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005127 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (713)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 278 (713)
+|..+++..-+.+..+.|.++|.+.... .....+++...+++. |...++.+.|..+|+...+. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4555555555555555555555555432 112222222222221 12234444455555555443 24445555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 279 CSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 279 ~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
+.+.++.+.|..+|++.... .|.. ..|...+..=.+.|+++.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55556666666666555443 2222 25555555555566666666666555553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.021 Score=59.72 Aligned_cols=85 Identities=12% Similarity=0.125 Sum_probs=39.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005127 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVG 428 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 428 (713)
...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..++++++. .| +...|..+..+|...|++++|
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHHH
Confidence 34444455555444444332 223344444444445555555555555554442 23 333444444455555555555
Q ss_pred HHHHHHHHH
Q 005127 429 LMLLSQAKE 437 (713)
Q Consensus 429 ~~~~~~m~~ 437 (713)
...|++.++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555554444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.64 Score=47.45 Aligned_cols=106 Identities=12% Similarity=0.106 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (713)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 352 (713)
+..|.-+...|+...|.++-.+. -.||...|-..+.+++..+++++-..+-.. +-++.-|-.++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 33344455556555555554433 135666666666666666666554443221 11234555666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005127 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (713)
Q Consensus 353 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (713)
|...+|..+...+. +..-+..|.+.|++.+|.+.-.
T Consensus 251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 66666665554421 1334555566666666655433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.062 Score=58.80 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
+...|.++...+...|++++|...+++..+. .|+...|..+..+|...|+.++|...+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555555555566777777777776663 45666666666667777777777777766665
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.034 Score=58.11 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=88.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 005127 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (713)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 389 (713)
-...+...|+++.|+..|.++++.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3456678899999999999999875 4567889999999999999999999999998764 3467789999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 390 LPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (713)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 419 (713)
+++|+..|++..+ +.|+...+...+.-|
T Consensus 86 ~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999987 467766665555333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.057 Score=50.01 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..+|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44444444445555555555554443322211 2344444445555555555555555544432 12233444444444
Q ss_pred HhcCCH
Q 005127 350 SNAKNW 355 (713)
Q Consensus 350 ~~~g~~ 355 (713)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.14 Score=51.74 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
+..+...+.+.|++++|.++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555566666666666665544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0056 Score=46.53 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=46.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHH
Q 005127 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (713)
|++.|++++|+++|+++.... |.+..+...++..+.+.|++++|.++++.+. .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 467899999999999998876 6677777777888888888888888888765 4554444444
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.25 Score=48.50 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=25.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005127 345 LMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (713)
Q Consensus 345 li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (713)
+...|.+.|.+..|..-|+.+.+. +.+......-.|+.+|...|..++|.+...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334455555555555555555543 111122333444555555555555554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.017 Score=56.19 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=51.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhCCChHHH
Q 005127 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 111 (713)
+.++++|.+|++.+.+.++.. |.+.+++..-..++.+.|.++.|++-.+.... .-..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345666666666666666544 55666666556666666666666655554332 2233555555566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHH
Q 005127 112 FQVLRLVQEAGLKADCKLYT 131 (713)
Q Consensus 112 ~~l~~~m~~~g~~pd~~~~~ 131 (713)
.+.|++.++ +.|+..+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 666555554 345544443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.052 Score=48.26 Aligned_cols=93 Identities=8% Similarity=-0.113 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (713)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 352 (713)
-.+..-+...|++++|.++|+-+...... +..-|-.|..+|-..|++++|+..|....... +-|+..+-.+..++.+.
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 34444555666666666666666655443 44555566666666667777777766666655 34555666666666667
Q ss_pred CCHHHHHHHHHHHHh
Q 005127 353 KNWQKALELYEHMKS 367 (713)
Q Consensus 353 g~~~~A~~l~~~m~~ 367 (713)
|+.+.|++-|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777666665553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.055 Score=48.08 Aligned_cols=90 Identities=12% Similarity=0.063 Sum_probs=44.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005127 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (713)
Q Consensus 98 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (713)
+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|.......+ -|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 3334445555555555555554432 22333344444455555555555555555554442 244445555555555555
Q ss_pred HHHHHHHHHHHH
Q 005127 178 VAKAFGAYGIMR 189 (713)
Q Consensus 178 ~~~A~~l~~~m~ 189 (713)
.+.|.+.|+..+
T Consensus 119 ~~~A~~aF~~Ai 130 (157)
T PRK15363 119 VCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0042 Score=49.69 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 005127 352 AKNWQKALELYEHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGL 429 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 429 (713)
.|+++.|..+|+++.+... .++...|..+..+|.+.|++++|++++++ .+ ..|+. .....+..+|...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666666666655421 11333444466666666666666666665 21 12222 22333356666666666666
Q ss_pred HHHHH
Q 005127 430 MLLSQ 434 (713)
Q Consensus 430 ~~~~~ 434 (713)
.++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.063 Score=49.51 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 347 (713)
..|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+....+.. +.....++.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 445555556666666666666666665443222 12355556666666666666666666665542 222344444444
Q ss_pred HHH
Q 005127 348 ACS 350 (713)
Q Consensus 348 ~~~ 350 (713)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.71 Score=44.24 Aligned_cols=143 Identities=13% Similarity=0.137 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM--- 346 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li--- 346 (713)
.+.+.++..+.-.|.+.-...++.+..+....-+....+.+.+.-.+.|+.+.|...|+...+..-+.|....+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556666666667777777777777776655677777777777778888888888887766543333333333333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 347 --GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (713)
Q Consensus 347 --~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (713)
..|.-..++.+|...|.++.... ..|...-|.-.-+..-.|+..+|++.++.|.+. .|...+-+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 33455667777777777776543 334444454444444567888888888888764 4555444433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.47 Score=46.58 Aligned_cols=177 Identities=10% Similarity=-0.014 Sum_probs=105.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 316 (713)
....+.+.|++++|.+.|+.+..... .+.... -.++.+|.+.+++++|...|++..+..+.-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 34445667777788877777766542 222322 34566777888888888888887776443233334334433331
Q ss_pred --cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005127 317 --AG---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376 (713)
Q Consensus 317 --~g---------------~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 376 (713)
.+ + ...|+.. +..++.-|-+..-..+|...+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 11 1 1123333 334444444445556666555554421 0111
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 377 MNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
--.+..-|.+.|.+.-|+.-|+.+.+. +.+........+..+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 114556688999999999999999874 223345566678899999999999988776554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.097 Score=48.44 Aligned_cols=93 Identities=11% Similarity=0.088 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (713)
....|..+...+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566777778888888888888888876543322 3577788888888888888888888887753 2245566667
Q ss_pred HHHHHHcCCHHHHHHH
Q 005127 169 IDGCAKAGQVAKAFGA 184 (713)
Q Consensus 169 i~~~~~~g~~~~A~~l 184 (713)
...|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777765544433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.2 Score=54.96 Aligned_cols=146 Identities=10% Similarity=-0.078 Sum_probs=105.1
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 005127 263 YNIKGTPEVYTIAINCCSQTG-----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--------KVEAAFEILQE 329 (713)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--------~~~~a~~~~~~ 329 (713)
...+.+...|...+.+..... ..+.|..+|++..+.... +...|..+..++.... ++..+.+....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345678899999988865433 367999999999987543 4455555544443321 12334444444
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005127 330 AKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (713)
Q Consensus 330 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (713)
.... ....+...|.++.-.+...|++++|...|++..+. .|+...|..+...|...|+.++|.+.+++... +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 3332 23445678888877777889999999999999987 47888999999999999999999999999877 4676
Q ss_pred HHHHH
Q 005127 409 TITYS 413 (713)
Q Consensus 409 ~~t~~ 413 (713)
..||.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 66654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0059 Score=48.82 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=7.2
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 005127 345 LMGACSNAKNWQKALELY 362 (713)
Q Consensus 345 li~~~~~~g~~~~A~~l~ 362 (713)
+..+|.+.|++++|..++
T Consensus 31 la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 333344444444444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.044 Score=50.50 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 165 YGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
|..+...+...|++++|+..|++..
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al 62 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAM 62 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333334444444444444444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.2 Score=42.79 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 278 CCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555444322 12233334444455555555555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.11 Score=52.44 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=24.5
Q ss_pred HHhc-CCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005127 314 AGHA-GKVEAAFEILQEAKNQ----GIS-VGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 314 ~~~~-g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
|... |++++|.+.|.+..+. +.. .-..++..+...+.+.|++++|.++|+++..
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444 5666666665554332 100 0122344455555566666666666665544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.21 Score=42.74 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=25.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 005127 171 GCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (713)
++-..|+.++|+.+|++....|...+ ...+-.+.+.+...|++++|..+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555443322 12233344445555555555555554443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.02 Score=43.43 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=23.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
.|++++|.++|+.+...... |...+..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555554443211 3444444445555555555555555544443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.10 E-value=2 Score=43.96 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
.+..|.-|...|....|.++-.+. . -|+...|..-+.+|++.++|++-.++... +..++-|-..+..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 344455555667766666654433 2 35667777777777777777766654322 2344667777777777
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005127 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 431 (713)
.|+..+|.....++ + +..-+..|.+.|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 77777777766551 1 13334455666666666544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.026 Score=42.38 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=29.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 347 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
..+.+.|++++|...|+.+.+.. +-+...|..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555556666666666555443 22344555555555566666666666655554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.08 Score=51.70 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=50.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHH
Q 005127 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKT 393 (713)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A 393 (713)
.+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..... .|. ..+|..|-.+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 34455555655555555543 334444555555556666555555555554432 222 34555555556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHH
Q 005127 394 MEVLSDMKSLGLCPNTITYSI 414 (713)
Q Consensus 394 ~~l~~~m~~~g~~p~~~t~~~ 414 (713)
++.|++.++ +.|+..+|-.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHH
Confidence 666555554 4555554443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.15 Score=54.52 Aligned_cols=216 Identities=14% Similarity=0.178 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCCCCCC
Q 005127 128 KLYTTLITTCAKSGKVDAMFEVF---------HEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKNVKPD 196 (713)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~pd 196 (713)
..+.+=+..|...|.+++|.++- +.+... ..+..-++..=++|.+-.+. -+.+.-+++|+++|-.|+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 33444455566667777665531 111111 11233345555566665543 344555677888887788
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------HHH--h-----
Q 005127 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-------MIH--K----- 262 (713)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~-------~m~--~----- 262 (713)
... +...|+-.|++.+|-++|.+--.+ |..+.+|.....++.|.++.. +|. +
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~~G~e-----------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKRSGHE-----------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHHcCch-----------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 654 344566678888888888764221 234455555555555555542 111 1
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----H-HHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDD-----M-TKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-----m-~~~g~---~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
+++... .+....+...|+.++|..+.-+ | .+.+- ..+..+...+...+-+...+..|-++|..|-.
T Consensus 701 r~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD- 775 (1081)
T KOG1538|consen 701 RNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD- 775 (1081)
T ss_pred hhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-
Confidence 011100 1223334445555555554321 1 11111 12344555555556666777778888876643
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005127 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374 (713)
Q Consensus 334 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 374 (713)
..+++++....+++.+|..+-+...+. .||+
T Consensus 776 --------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dV 806 (1081)
T KOG1538|consen 776 --------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDV 806 (1081)
T ss_pred --------HHHHhhheeecccchHhHhhhhhCccc--cccc
Confidence 245677888889999998888876653 4444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.3 Score=45.40 Aligned_cols=176 Identities=14% Similarity=0.085 Sum_probs=104.3
Q ss_pred CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005127 232 PDHITIGALM-KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308 (713)
Q Consensus 232 pd~~~~~~ll-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 308 (713)
|...++-.+- .++...|++++|..+-..+.+.+- ...+...+++ +.-.++.+.|...|++-+..+ |+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~-- 238 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQK-- 238 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhh--
Confidence 4444444332 345667777777777666665542 1233333333 234566777777777766653 33222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHH
Q 005127 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALC 385 (713)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~p~~~~~~~li~~~~ 385 (713)
.+..-...+.+..+.+.| +...+.|++..|.+.|.+.... ...|+...|-.......
T Consensus 239 --------sk~~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 239 --------SKSASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred --------HHhHhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 122222223333344443 3456788888888888887653 34556666777777788
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHC
Q 005127 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
+.|+..+|+.--++... .|..-.-.+ ..++.-.+++++|++.|+...+.
T Consensus 299 rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999888777654 233322222 24555678888898888887764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.93 Score=43.17 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=30.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005127 100 SVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 100 ~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
..+...|++.+|...|+.+...-... -....-.++.++.+.|+++.|...|+...+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666666666666666542111 1233445566666666666666666666554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.90 E-value=3 Score=46.05 Aligned_cols=123 Identities=16% Similarity=0.149 Sum_probs=57.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhh--HHHHHHHHHhh-hCCC--CCHHHHHHHHHHHHhC
Q 005127 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ--KAIKEAFRFFK-LVPN--PTLSTFNMLMSVCASS 105 (713)
Q Consensus 31 ~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~-~~~~--~~~~~~~~li~~~~~~ 105 (713)
..++|+..+.+..|+++...+...-... +.++ .--.....++ ..-+++++..+ ++.. ..-.+|..+.+-....
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl-~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVL-LEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHH-HHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 4556677788888888877775332111 1222 1112222211 11122333222 2222 3445676776666777
Q ss_pred CChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005127 106 KDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~----pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (713)
|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+.+
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 7777777666532222110 0111233344444555555555555555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.3 Score=42.19 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=11.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 005127 346 MGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 346 i~~~~~~g~~~~A~~l~~~m~~ 367 (713)
...|.+.|.+..|..-|+.+.+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3445555555555555555544
|
|
| >smart00463 SMR Small MutS-related domain | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.037 Score=43.67 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=57.7
Q ss_pred eeeccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccCCccceeccCCchhhhhhhhhhHHHHHHHHHhCCCCCC
Q 005127 577 VVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQG 656 (713)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 656 (713)
+.+|+|+++...|...+..+|+..... +.-+.+ .+++|.|.++....+.++..|.++|...+.+|..
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~----~~~~~~---------~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~ 68 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARLK----GLEQKL---------VIITGKGKHSLGGKSGVKPALKEHLRVESFRFAE 68 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHHc----CCCceE---------EEEEcccCCCccchhhHHHHHHhchhhcccccCC
Confidence 479999999999988887788766643 211233 3568888887655567999999999999999987
Q ss_pred CCcc-ceEEec
Q 005127 657 NGSY-GKIRIN 666 (713)
Q Consensus 657 ~~~~-g~~~~~ 666 (713)
+ .| |.+++.
T Consensus 69 ~-~~~G~~~v~ 78 (80)
T smart00463 69 E-GNSGVLVVK 78 (80)
T ss_pred C-CCCeEEEEE
Confidence 6 56 988864
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.45 Score=46.87 Aligned_cols=98 Identities=12% Similarity=0.010 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005127 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMKSIKLKPTVSTMNA 379 (713)
Q Consensus 303 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~~~~p~~~~~~~ 379 (713)
|...|-.|..+|...|+.+.|...|....+.. .+++..+..+..++... ..-.++..+|+++.... .-|+.+-..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 44555555555555555555555555554431 22333333333332221 12334555555555432 223444444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 005127 380 LITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
|...+...|++.+|...|+.|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 44555555555555555555554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.049 Score=40.85 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=28.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
..+.+.|++++|...|+.+.+.. +.+...+..+..++.+.|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555544 33445555555555555555555555555544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.055 Score=41.11 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMT 296 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~ 296 (713)
+|..+...+...|++++|...|++..+.+ +.+...|..+..+|.+.| ++++|++.|++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 44444444444555555555554444443 333444444444444444 3455554444443
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.19 Score=49.76 Aligned_cols=58 Identities=22% Similarity=0.106 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005127 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (713)
|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+...|...|++++|...|..+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333334445555555555555543 2221 233344455555555555555555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.73 Score=41.13 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 330 (713)
..++..+...|++++|..+.+.+....+- |...|..+|.+|...|+...|.+.|..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444445555555555554444332 4444555555555555555555544443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.3 Score=47.71 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 005127 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (713)
Q Consensus 44 A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (713)
-+--++++.++|-.|+... +...|.-.|++.+|-++|.+
T Consensus 619 li~EL~~~k~rge~P~~iL----lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLL----LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHhcCCCchHHH----HHHHHHhhhhHHHHHHHHHH
Confidence 3334455555554444332 33445556666666666653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.077 Score=40.28 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 154 (713)
.+|..+...+...|++++|+..|.+.++.. +.+...|..+..+|...| ++++|++.|+...
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444455555555554444432 223344444444444444 3444444444443
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.34 Score=48.02 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNA 202 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~ 202 (713)
.|...+..+.+.|++++|...|+.+.+. .|+. .++-.+...|...|++++|...|+.+.+.-. +.....+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4554444445556677777777776665 2322 3555666666677777777777777664410 111333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC
Q 005127 203 LITACGQSGAVDRAFDVLAEMNAE 226 (713)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~ 226 (713)
+...+...|+.++|..+|+++...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455566667777777777766653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.93 Score=44.70 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 005127 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAFEILQEAKNQGISVGIISY 342 (713)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~ 342 (713)
+.|...|-.|...|...|+++.|..-|.+..+.... |...+..+..++.... ...++..+|+++.+.. +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 567788999999999999999999999888775332 5555555555554432 3457888898888875 4567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005127 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (713)
Q Consensus 343 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 382 (713)
.-|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 778888889999999999999998763 44445555554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.12 Score=49.65 Aligned_cols=112 Identities=19% Similarity=0.269 Sum_probs=67.9
Q ss_pred HHhhhCC--CCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005127 82 RFFKLVP--NPTLSTFNMLMSVCASS-----KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (713)
Q Consensus 82 ~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (713)
..|..++ ..|-.+|-+.+..+... +..+--...++.|.+-|+..|..+|+.||+.+-+..-... .+|+
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ--- 129 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQ--- 129 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHH---
Confidence 3444444 45556666666555432 4455555666677777777777777777766544321110 1111
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005127 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (713)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 212 (713)
...--|- .+-+-+++++++|...|+.||..+-..|+.++++.+-
T Consensus 130 ------------~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 ------------KVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------------HHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111121 2334578899999999999999999999999988765
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.3 Score=42.23 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhh-------------hCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c
Q 005127 198 VVFNALITACGQSGAVDRAFDVLAEMN-------------AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-Y 263 (713)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~-------------~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~ 263 (713)
.++.++|.++++.|+++....+++..- ....+..|+..+..+++.+|+..|++..|.++.+.+.+ .
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555544444321 11123444555555555555555555555555544432 2
Q ss_pred CCCCCHHHHHHHHH
Q 005127 264 NIKGTPEVYTIAIN 277 (713)
Q Consensus 264 ~~~~~~~~~~~li~ 277 (713)
+++.+...|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33333444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.14 Score=45.81 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT-----KKGVIPDEVFL 307 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t~ 307 (713)
+...++..+...|+++.|..+.+.+...+ +.+...|..+|.+|...|+...|.++|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556667778888888888888888776 6677888888888888888888888888764 34777776553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.09 E-value=3.4 Score=39.81 Aligned_cols=132 Identities=10% Similarity=0.047 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHH----
Q 005127 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA---- 239 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~---- 239 (713)
+-+.++..+.-.|.+.-...++.+.++...+.++.....|.+.-.+.|+.+.|...|++..+.. -..|..+.+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~--~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT--QKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--hhhhccchhHHHHh
Confidence 3455666666667777777777777776656666777777777777777777777777655431 1222222222
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 240 -LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 240 -ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
....|.-.+++..|...|.++...+ +.++..-|.-.-+..-.|+..+|++..+.|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2234455566666666666666655 334444444333444456666677777666665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.15 Score=39.21 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=25.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 348 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.|.+.+++++|.++++.+.... +.+...|......|.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555555555555544432 22333444444445555555555555555444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.35 Score=41.81 Aligned_cols=97 Identities=7% Similarity=-0.007 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (713)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 417 (713)
|..++.++|.++++.|+++....+.+..= |+..+. -...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~---------~~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNG---------KKKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCC---------ccccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566777777777777777666665432 111111 000000 1123457899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 005127 418 ACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (713)
Q Consensus 418 a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~ 454 (713)
+++..|++..|.++.+...+. +++-+..+|..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999988764 8888888888888653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.38 Score=48.86 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=37.8
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHH
Q 005127 101 VCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFH 151 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~ 151 (713)
-+++.|+......+|+..++.|- -|. ..|..|.++|.-.+++++|++.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 37788888888889988888873 343 356777778888888888888764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=3.2 Score=37.82 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHH
Q 005127 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GTPEVYT 273 (713)
Q Consensus 195 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~ 273 (713)
|+...-..|..+..+.|+..+|...|.+.... .+..|....-.+.++....+++..|...++.+-+.+.. .++...-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG--~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSG--IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc--ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 44444444555555666666666666555432 23344444445555555555555555555554443210 0122223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 274 IAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
.+...|.-.|.+.+|..-|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 3334444444444444444444433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.24 Score=47.83 Aligned_cols=117 Identities=21% Similarity=0.298 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 005127 124 KADCKLYTTLITTCAK-----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (713)
Q Consensus 124 ~pd~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 198 (713)
+.|-.+|-+.+..+.. .+.++-....+..|.+.|++.|..+|+.|++.+-+-. +.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence 3455666666666654 3567777778888999999999999999888764422 1222 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 005127 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIH 261 (713)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~-~~A~~~~~~m~ 261 (713)
.|....--|-+. -+-+.+++++|.. +|+.||..+-..|++++.+.+-. .+..++.--|.
T Consensus 127 vfQ~~F~HYP~Q--Q~C~I~vLeqME~--hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYPQQ--QNCAIKVLEQMEW--HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCchh--hhHHHHHHHHHHH--cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 222222222222 3457889999986 59999999999999999998874 33334444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.66 E-value=5.4 Score=41.37 Aligned_cols=31 Identities=19% Similarity=0.061 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 408 NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
|--.+.+++.++.-.|+.+.|.+..+.|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445667777777788888888888887765
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.7 Score=37.12 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=18.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005127 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 133 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
++..+...+........++.+...+. .+...+|.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33344444444444444444444432 344444444444444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.6 Score=46.74 Aligned_cols=169 Identities=12% Similarity=0.155 Sum_probs=104.3
Q ss_pred CcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 005127 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (713)
Q Consensus 24 ~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 103 (713)
...+...-|...+-+++++++.++.+.-.-..-+| ...+..+++++.+.|..+.|+.+-. |. ..-.....
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl 329 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELAL 329 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHH
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHH
Confidence 34566777888888899999877774111111122 3345667788888888888887743 22 22344566
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005127 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (713)
Q Consensus 104 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (713)
+.|+++.|.++.+. ..+...|..|.+.+.+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 77888888776542 23666888888888888888888888877652 5667777778888877777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005127 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 184 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (713)
+-+.....|- +|....++.-.|+.++..+++.+-
T Consensus 395 l~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7777666652 555556666678888877777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.5 Score=44.78 Aligned_cols=265 Identities=17% Similarity=0.078 Sum_probs=131.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHH--HhC--CCC-CCHHHHHHHHH
Q 005127 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQVAKAFGAYGIM--RSK--NVK-PDRVVFNALIT 205 (713)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m--~~~--g~~-pd~~~~~~li~ 205 (713)
.-+++.|+......+|+..++.|-+ |.. +|..|-++|.-.+++++|++....= ..+ |-+ -...+...|-.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4478999999999999999998844 433 5667777888888999998875421 110 100 00111112222
Q ss_pred HHHhcCCHHHHHHHHHHh----hhCCCCCCCCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q 005127 206 ACGQSGAVDRAFDVLAEM----NAEVHPVDPDHITIGALMKACANAGQ--------------------VDRAREVYKMIH 261 (713)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m----~~~~~~~~pd~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~m~ 261 (713)
.+--.|.+++|.-.-.+- .+.+..+ .....+-.+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 233334445444321110 0000000 112233344555544432 223333332111
Q ss_pred ----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 262 ----KYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (713)
Q Consensus 262 ----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 331 (713)
+.|-. ..-..|..|.+.|.-.|+++.|+...+.-+. -|-. .....++.+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 11100 0012344555555556777777665543221 1111 122345566666666777777776665432
Q ss_pred ----HCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005127 332 ----NQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----I-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 332 ----~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
+.| -......+.+|.+.|.-..++++|+..+.+-.. . ...-....+-+|..+|...|..++|+.+.+.-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 222 122344556666666666667777666654221 0 001234455566666666666666666555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.37 E-value=2.7 Score=35.96 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (713)
Q Consensus 276 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 334 (713)
++.+.+.|+-+.-.+++.++.+ +-.+++.....+..||.+.|+..++-+++.+.-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444433 112344444444444444444444444444444444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.29 Score=37.54 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=24.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005127 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
+.+.++++.|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444444444444432 223334444444444444444444444444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.30 E-value=7.5 Score=40.13 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=54.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005127 278 CCSQTGDWEFACSVYDDMTKK---GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (713)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 354 (713)
-..+.|.+..|.+.|.+.+.. ++.|+...|.....+..+.|++++|+.--....+.. ..-+..|..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHH
Confidence 345677777888877776654 345556666666667777788877777666655432 0011222223344555667
Q ss_pred HHHHHHHHHHHHhC
Q 005127 355 WQKALELYEHMKSI 368 (713)
Q Consensus 355 ~~~A~~l~~~m~~~ 368 (713)
|++|.+-|+...+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777766543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.29 E-value=6.9 Score=43.99 Aligned_cols=175 Identities=12% Similarity=0.099 Sum_probs=100.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh-CCCCCHHHHHHHHHHHHhCCChHH
Q 005127 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL-VPNPTLSTFNMLMSVCASSKDSEG 110 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 110 (713)
.+.|++..-++-|+.+.+.-.... ..-..+|...+..+...|++++|...|-+ +.--++ ..+|.-|....+..+
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHH
Confidence 445666667777776664432211 22355777788888899999999988754 332222 234555666666677
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005127 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (713)
Q Consensus 111 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 190 (713)
--..++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+.-. .|.. ..-....+..+-+.+-.++|..+-.+...
T Consensus 416 Lt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 416 LTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 77788888888854 44455678999999988877666554433 2211 01123445555555555555544433321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005127 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 191 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (713)
+......+ +-..+++++|++.+..+
T Consensus 492 -----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 -----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred -----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 12222222 22345566666665544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.5 Score=47.07 Aligned_cols=132 Identities=12% Similarity=0.133 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (713)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 207 (713)
.-.+.++..+-+.|..+.|+++-..-. .-.....+.|+++.|.++-++. .+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 346666666666677777766533221 2244455667777766554332 2556777777777
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
.+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++-+.....| -+|....++...|+.++
T Consensus 358 L~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEE 420 (443)
T ss_dssp HHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHH
Confidence 77777777777776543 24455556666677666666666555554 24445555555566666
Q ss_pred HHHHHHH
Q 005127 288 ACSVYDD 294 (713)
Q Consensus 288 A~~l~~~ 294 (713)
..+++.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.07 E-value=8.4 Score=39.98 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=56.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005127 132 TLITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (713)
Q Consensus 132 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 205 (713)
.++-.|....+++...++.+.+.... +.-...+--...-++.+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44556777888888888888887641 11122222233334555 7888888888888665555677777777666
Q ss_pred HHHhc---------CCHHHHHHHHHHh
Q 005127 206 ACGQS---------GAVDRAFDVLAEM 223 (713)
Q Consensus 206 ~~~~~---------g~~~~A~~~~~~m 223 (713)
.|-.. ...+.|...|.+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 55321 2255566666543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.94 E-value=3.7 Score=36.20 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 317 (713)
..++..+.+.+.......+++.+...+ ..++..+|.++..|++.+ ..+..+.+.. .++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555666666666777776666655 355566677777776553 2333333332 11223344455666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005127 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (713)
Q Consensus 318 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 385 (713)
+.++++..++..+.. +...+..+.+. ++++.|.+.+.+ ..+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 666666665554321 11122222222 556666665543 124445555555443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.94 E-value=4.9 Score=36.69 Aligned_cols=131 Identities=17% Similarity=0.128 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 005127 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (713)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~ 238 (713)
-|++.---.|..+....|+..+|...|.+...--+.-|....-.+.++....++...|...++.+-+-. +-..+..+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN-PAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-CccCCCCchH
Confidence 456666667788888888888888888888765556677777778888888888888888888775431 1111223444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (713)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (713)
.+...|...|.+.+|+.-|+.....- |+...-.-....+.+.|+.+++..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 56677888888888888888877653 33333222333455666655554433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.6 Score=39.13 Aligned_cols=122 Identities=12% Similarity=0.169 Sum_probs=80.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCC----CCHH-HHHHHHH--HHHhCCC
Q 005127 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS-TFNMLMS--VCASSKD 107 (713)
Q Consensus 35 L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~li~--~~~~~g~ 107 (713)
|.+.+..++|+.-|.++.+.|.-............+..+.|+...|+..|+++.. |-+. -..-|-. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 5589999999999999999886555555555556667778999999999997642 2221 1111111 2455677
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005127 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
++......+-+-..+-+.-...-..|.-+..+.|++..|.++|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 7776666665554443333444556666666778888888888777654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.5 Score=42.36 Aligned_cols=82 Identities=17% Similarity=0.069 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005127 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (713)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 149 (713)
..|++++|..+|..+. .-|..-|..|...|-..+++++|+..|......+ .-|+..+-....+|...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 4456666666665432 2334444444455555566666666665554443 22333344456666666777777777
Q ss_pred HHHHHH
Q 005127 150 FHEMVN 155 (713)
Q Consensus 150 ~~~m~~ 155 (713)
|+....
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 766665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.74 E-value=7.8 Score=39.16 Aligned_cols=130 Identities=18% Similarity=0.282 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 005127 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AG----KVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN- 354 (713)
Q Consensus 285 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~--~g----~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~- 354 (713)
+++.+.+++.|.+.|+.-+..+|-+....... .. ....|..+|+.|++... .++...+..|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777666665553333222 11 24567788888877643 2344555555544 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 355 ---WQKALELYEHMKSIKLKPTV-STMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILL 416 (713)
Q Consensus 355 ---~~~A~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (713)
.+.++..|+.+.+.|+.++- ..+.+-|-+++.... ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 35567777777776665543 344444444443222 346777888888888887776666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.25 Score=38.56 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 376 TMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
+|+.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555444321 011 11 2344445555555566666655555443
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.26 E-value=11 Score=38.63 Aligned_cols=148 Identities=17% Similarity=0.056 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH----
Q 005127 285 WEFACSVYDDMTKKGVIPDEVF-LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL---- 359 (713)
Q Consensus 285 ~~~A~~l~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~---- 359 (713)
...|...-.+..+ +.||.+- -..-..++.+.|++.++-.+++.+-+....|++. ++..+.+.|+.-...
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHH
Confidence 4444444444333 2344322 2233456788899999999999988876555542 333456666532211
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 005127 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKED 438 (713)
Q Consensus 360 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~ 438 (713)
+-++.|+ +.+..+--.+..+-...|++..|..--+.... ..|....|..+.+.-.. .|+-.++++.+.+..+.
T Consensus 319 ~~L~slk----~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 KKLESLK----PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhcC----ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1122333 34566777777888888998888776666555 47888888877766544 49999999999999887
Q ss_pred CCCCCH
Q 005127 439 GVIPNL 444 (713)
Q Consensus 439 g~~p~~ 444 (713)
.-+|+-
T Consensus 393 PrdPaW 398 (531)
T COG3898 393 PRDPAW 398 (531)
T ss_pred CCCCcc
Confidence 666654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.23 E-value=4.6 Score=40.78 Aligned_cols=131 Identities=14% Similarity=0.258 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhhCCCCC-CCCHHHHHHHHHHHHHcCC-
Q 005127 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ--SG----AVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQ- 249 (713)
Q Consensus 178 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~~~-~pd~~~~~~ll~~~~~~g~- 249 (713)
+++.+.+++.|.+.|+..+..+|-+....... .. ....|..+|+.|++...-+ .++..++..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34555667777777777666665543222222 11 2456777888887653221 2445555555543 2233
Q ss_pred ---HHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 250 ---VDRAREVYKMIHKYNIKGTP--EVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSAL 310 (713)
Q Consensus 250 ---~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~l 310 (713)
.+.++.+|+.+.+.|+..+. ...+.++........ ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34556666666666654422 222222222221111 33566667777777766655555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.6 Score=45.93 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=25.2
Q ss_pred CCCCCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005127 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (713)
Q Consensus 19 ~~~~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~ 55 (713)
...|.+.......-..|.+.|++++|+..|++.++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN 105 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3445555555555566778888888888888877765
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.07 E-value=10 Score=37.59 Aligned_cols=150 Identities=17% Similarity=0.099 Sum_probs=83.0
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (713)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 216 (713)
....|++.+|..+|+.......+ +...--.|..+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34566777777777766655322 34455566677777777777777777765442122222222334444444444444
Q ss_pred HHHHHHhhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 217 FDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVY 292 (713)
Q Consensus 217 ~~~~~~m~~~~~~~~p-d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (713)
.++-.+... .| |...-..+...+...|+.+.|.+.+-.+.+++. -.|...-..+++.+.--|.-+.+...+
T Consensus 223 ~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 223 QDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 444444432 23 555556666777777777777766665554432 224456666777776666444333333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=2.4 Score=44.59 Aligned_cols=63 Identities=11% Similarity=-0.024 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (713)
+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|++++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666666666666666666654 3332 2466666666666666666666666664
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.00 E-value=10 Score=37.51 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=70.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCH
Q 005127 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~ 250 (713)
.....|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+..... .........-|..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHHHHHHHhcC
Confidence 3445666666666666665542 22233444566666666777777777666543210 11111122233444444444
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 005127 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAG 318 (713)
Q Consensus 251 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~g 318 (713)
.+...+-...-. + +.|...-..+...|...|+.+.|++.+-.+.+. |.. |...-..+++.+.-.|
T Consensus 220 ~~~~~l~~~~aa-d-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA-D-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 333333333322 1 234555556666666667777666666555443 222 3344455555555555
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.99 E-value=13 Score=38.86 Aligned_cols=418 Identities=13% Similarity=0.137 Sum_probs=209.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC----chHHHHHHHHHHHHhhHHHHHH---HHHhhhCCCCCHHHHHHHHHH--HHhCC
Q 005127 36 IRQGRISECIDLLEDMERKGLLD----MDKVYHARFFNVCKSQKAIKEA---FRFFKLVPNPTLSTFNMLMSV--CASSK 106 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~~~~~~~~~li~~--~~~~g 106 (713)
-+.+++.+|..+|.+.-..---. ....+.+.++.++... +++.- +..+++-.. ...|-.+..+ +.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhh
Confidence 38999999999999887543111 1233444455544432 22222 222333222 2234444433 45678
Q ss_pred ChHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHH
Q 005127 107 DSEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGAL 168 (713)
Q Consensus 107 ~~~~A~~l~~~m~~~--g~~p------------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~l 168 (713)
+++.|++.+..-... +-.| |-..-+..++++...|++.+++.+++++... .+.-|..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999888766554 3222 2223356678888999999999998887654 345788999987
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhh
Q 005127 169 IDGCAKAGQ---------------VAKAFGAYGIMRSK------NVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNA 225 (713)
Q Consensus 169 i~~~~~~g~---------------~~~A~~l~~~m~~~------g~~pd~~~~~~li~~~~~~--g~~~~A~~~~~~m~~ 225 (713)
+-+++++=- ++.+.-...+|... .+.|-...+..++.-..-. .+..--++++..-..
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 777665311 22222222333221 1233333333333222111 112222333332221
Q ss_pred CCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005127 226 EVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (713)
Q Consensus 226 ~~~~~~pd~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 300 (713)
+-+.|+- .+...|...+.. +.+++..+-+.+....+.+ -..++..+++...+.++...|...+.-+..-..
T Consensus 254 --~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 254 --FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred --hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 2344542 233444444444 4555544444333221111 125677788888888888888888776654422
Q ss_pred CCCHHHH-------HHHHHHHH-h---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCC-HHHHHHHHHHH
Q 005127 301 IPDEVFL-------SALIDFAG-H---AGKVEAAFEILQEAKNQGISVGIISYSSL---MGACSNAKN-WQKALELYEHM 365 (713)
Q Consensus 301 ~p~~~t~-------~~li~~~~-~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~l---i~~~~~~g~-~~~A~~l~~~m 365 (713)
+...- ..+.+..+ . .-++..=+.++......++.- -....-| ..-+.+.|. -++|..+++.+
T Consensus 330 --~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 330 --RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred --cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 22111 11111111 0 111222334444444333211 1111112 223445555 77888888887
Q ss_pred HhCCCCCCHHHHHHHH----HHHHhC---CChhHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHhcCCHHHHHHHH
Q 005127 366 KSIKLKPTVSTMNALI----TALCDG---DQLPKTMEVLSDMKSLGLCPNTI----TYSILLVA--CERKDDVEVGLMLL 432 (713)
Q Consensus 366 ~~~~~~p~~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a--~~~~g~~~~a~~~~ 432 (713)
.+.. .-|..+-|.+. ..|.+. ..+.+-+.+-+-..+.|+.|-.+ .-+.+.+| +...|++.++.-.-
T Consensus 407 l~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 407 LQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred HHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 7642 23443333322 234332 23444444444456778777433 33333332 45678888876554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH---hhHHHHHHHHHH
Q 005127 433 SQAKEDGVIPNLVMFKCIIGMCS---RRYEKARTLNEH 467 (713)
Q Consensus 433 ~~m~~~g~~p~~~~~~~li~~~~---r~~~~a~~l~~a 467 (713)
.-+.+ +.|.+.+|.-+- +|. ++|.+|......
T Consensus 486 ~WL~~--iaPS~~~~RLlG-l~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 486 SWLTK--IAPSPQAYRLLG-LCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHH--hCCcHHHHHHHH-HHHHHHhhHHHHHHHHHh
Confidence 44444 778888876543 332 367777666543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.94 Score=40.64 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=40.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (713)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 324 (713)
...|++++|..+|.-+.-.+ .-+..-|..|..++-..+++++|+..|......+.. |...+-....++...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 34555555555555554443 223334444555555555555555555544332221 2222333444455555555555
Q ss_pred HHHHHHHH
Q 005127 325 EILQEAKN 332 (713)
Q Consensus 325 ~~~~~m~~ 332 (713)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55554444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.96 E-value=9.4 Score=37.00 Aligned_cols=54 Identities=4% Similarity=-0.137 Sum_probs=33.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTI---TYSILLVACERKDDVEVGLMLLSQA 435 (713)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m 435 (713)
..-|.+.|.+..|..-+++|++. .+-+.. .+-.+..+|.+.|..++|...-.-+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 44577788888888888888775 222223 3444456777777777776654433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.91 E-value=12 Score=38.27 Aligned_cols=278 Identities=15% Similarity=0.115 Sum_probs=172.3
Q ss_pred HHHHHHHHHhhhC---CCCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHHH
Q 005127 75 KAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAMF 147 (713)
Q Consensus 75 ~~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~--~~~~li~~~~~~g~~~~A~ 147 (713)
|+-..|.++-.+. ...|....-.++.+ -.-.|+++.|.+-|+.|.. .|... -...|.-..-+.|+.+.|.
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 4555555554332 23344444444433 3446899999999999985 22222 1233444445678888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHHh---cCCHHHHHHHHH
Q 005127 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVV--FNALITACGQ---SGAVDRAFDVLA 221 (713)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~--~~~li~~~~~---~g~~~~A~~~~~ 221 (713)
..-+..-..- +--...+.+.+...|..|+++.|+++.+.-+... +.+|..- -..|+.+-.. .-+...|...-.
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 8887776543 2245678889999999999999999998776542 3444332 2234433222 234556666555
Q ss_pred HhhhCCCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC
Q 005127 222 EMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KG 299 (713)
Q Consensus 222 ~m~~~~~~~~pd~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g 299 (713)
+..+ +.||.+-- ..-..++.+.|+..++-.+++.+-+... .+.++... .+.+.|+ .++.-++...+ ..
T Consensus 254 ~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP--HP~ia~lY--~~ar~gd--ta~dRlkRa~~L~s 323 (531)
T COG3898 254 EANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP--HPDIALLY--VRARSGD--TALDRLKRAKKLES 323 (531)
T ss_pred HHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--ChHHHHHH--HHhcCCC--cHHHHHHHHHHHHh
Confidence 5443 35553322 2334678999999999999999987754 44444332 2344554 33333333222 11
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 005127 300 VIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELYEHMKSI 368 (713)
Q Consensus 300 ~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~ 368 (713)
.+| +..+...+..+....|++..|..--+...+. .|....|..|.+.-. ..|+-.++...+.+..+.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 223 5567777888888899998888766666553 577777877777664 459999999999888764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.89 E-value=5.5 Score=34.16 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005127 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 370 (713)
.....+.+....|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555666677676666766665532 55666666677777777777777777777666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.31 Score=38.00 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=8.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 005127 201 NALITACGQSGAVDRAFDVLAE 222 (713)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~ 222 (713)
+.+...|...|++++|+..|++
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3333444444444444444433
|
... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.70 E-value=7.8 Score=38.79 Aligned_cols=151 Identities=9% Similarity=-0.017 Sum_probs=103.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHH
Q 005127 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI----ISYSSLMGACSNAKNWQ 356 (713)
Q Consensus 281 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~ 356 (713)
-.|+..+|-..++++++.-+. |...+...=.+|.-.|+.+.-...++++... ..+|. .+-..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457777788888888876443 7777888888888899988888888888765 12333 22333344456889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---GLCPNTITYSILLVACERKDDVEVGLMLLS 433 (713)
Q Consensus 357 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (713)
+|++.-++..+.+ +-|...-.++...+-.+|+..++.++..+-... +--.-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999988887654 456677778888888999999999887653321 000011223333334555689999999996
Q ss_pred H
Q 005127 434 Q 434 (713)
Q Consensus 434 ~ 434 (713)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.50 E-value=3.8 Score=42.18 Aligned_cols=93 Identities=18% Similarity=0.098 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV-HTYGALIDGC 172 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~ 172 (713)
+++.+...+.+.+++..|++.....+..+ ++|+...-.-..+|...|+++.|+..|+.+.+. .|+. .+-+-|+.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 45555556666677777777776666655 556666666666666677777777777777665 3333 3333343333
Q ss_pred HHcCCHH-HHHHHHHHHH
Q 005127 173 AKAGQVA-KAFGAYGIMR 189 (713)
Q Consensus 173 ~~~g~~~-~A~~l~~~m~ 189 (713)
-+..... ...++|..|.
T Consensus 336 ~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 3333322 2345555554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.45 E-value=10 Score=41.30 Aligned_cols=94 Identities=12% Similarity=0.082 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRV 198 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ 198 (713)
.+..+++..+-.|+-+.+++.+.+..+.+--... .+|...+..++- ....+.|.++++.+.+. .|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 3456677777778888888888876653211122 234444443333 34566777777777665 56655
Q ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHhh
Q 005127 199 VFNALI-TACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 199 ~~~~li-~~~~~~g~~~~A~~~~~~m~ 224 (713)
.|...- +.+...|++++|.+.|++..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 554332 44555677777777777543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.92 E-value=4.9 Score=34.33 Aligned_cols=91 Identities=16% Similarity=0.103 Sum_probs=61.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCC--CHHHHHHHHHHHHhcCC
Q 005127 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCP--NTITYSILLVACERKDD 424 (713)
Q Consensus 348 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p--~~~t~~~ll~a~~~~g~ 424 (713)
+.+..|+++.|++.|.+....- +.....||.-..+|.-.|+.++|++-+++..+. |-+- -...|..--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4667788888888887766532 345677888888888888888888888777653 2111 11224433455677888
Q ss_pred HHHHHHHHHHHHHCC
Q 005127 425 VEVGLMLLSQAKEDG 439 (713)
Q Consensus 425 ~~~a~~~~~~m~~~g 439 (713)
.+.|+.-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888776665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.33 E-value=6.9 Score=33.47 Aligned_cols=90 Identities=10% Similarity=0.046 Sum_probs=46.9
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHcCCH
Q 005127 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA---LIDGCAKAGQV 178 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---li~~~~~~g~~ 178 (713)
.+..|+++.|++.|.+.+..- +-....||.-..++.-.|+.++|++-+++..+..-........+ -...|-..|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455566666666666555432 33455666666666666666666666665554321222222222 12234455666
Q ss_pred HHHHHHHHHHHhCC
Q 005127 179 AKAFGAYGIMRSKN 192 (713)
Q Consensus 179 ~~A~~l~~~m~~~g 192 (713)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666665554444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.19 E-value=18 Score=36.36 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005127 199 VFNALITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (713)
Q Consensus 199 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 263 (713)
+...++.+|...+.. ++|..+++.+..+ .+-+ ..++..-+..+.+.++.+.+.+++..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555555443 3444455544332 1212 223333444455556666666666665543
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.15 E-value=10 Score=41.26 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 005127 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTP------EVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVF 306 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t 306 (713)
+..+++...-.||-+.+.+.+....+.+-...+ -.|..++..++. ....+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555555556666666666554432211111 123333333332 34456667777766665 344444
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005127 307 LSAL-IDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 307 ~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
|... ...+...|++++|.+.|+...... .+.....+--+.-.+.-.+++++|.+.|..+.+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 4332 233445666777777766544211 011122333344445555556666666655554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.65 E-value=34 Score=38.56 Aligned_cols=152 Identities=10% Similarity=0.088 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCC
Q 005127 30 HSYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (713)
..++-|++.+.+++|+++.+..... .+. -......++..+...|++++|-...-.|...+..-|.--+..++..++
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 3456689999999999988766532 232 222333444445566788888888777777777778777777777766
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH------------------HHHCCCCCCHHHHHHHH
Q 005127 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE------------------MVNAGIEPNVHTYGALI 169 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~------------------m~~~g~~~~~~~~~~li 169 (713)
..... ..+.......+...|..++..+.. .+...-.++..+ ..+. .-+...-..|.
T Consensus 439 l~~Ia---~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La 512 (846)
T KOG2066|consen 439 LTDIA---PYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLA 512 (846)
T ss_pred cchhh---ccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHH
Confidence 54322 222222112345566666666655 222111111111 0000 11222233467
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 005127 170 DGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~ 189 (713)
..|...+++..|+.++-..+
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77777788888887777665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.14 E-value=17 Score=34.25 Aligned_cols=200 Identities=17% Similarity=0.070 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 005127 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (713)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~- 312 (713)
..+......+...+++..+...+...... ........+......+...+.+..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44455555566666666666665555432 2233344555555566666666666666666665443321 11222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCC
Q 005127 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQ 389 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~ 389 (713)
.+...|+++.|...+........ ......+......+...++.+.|...+....... .. ....+..+-..+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777777777777644221 1233444444444667777888888877776542 12 35667777777777778
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 390 LPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.++|...+...... .|+ ...+..+...+...+..+++...+.+..+.
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888777763 343 333444444444666777777777776653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.07 E-value=6.2 Score=38.54 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=10.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh
Q 005127 203 LITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~ 224 (713)
|...+...|++++|..+|..+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~ 205 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVV 205 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHH
Confidence 4444444444444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.93 E-value=3.5 Score=40.83 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~~~~l 203 (713)
++..++..+..+|+.+.+.+.++++.... +-|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566777777777777777777777664 33677777888888888888888777777654 4677766666555
Q ss_pred HHH
Q 005127 204 ITA 206 (713)
Q Consensus 204 i~~ 206 (713)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.87 E-value=21 Score=40.36 Aligned_cols=177 Identities=15% Similarity=0.153 Sum_probs=107.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 005127 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC----GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~l 240 (713)
...-++..++...++.|+.+-+.- + .|..+...+...| .+.|++++|...|-+-.. -++|. .+
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~---~le~s-----~V 403 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG---FLEPS-----EV 403 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc---cCChH-----HH
Confidence 345566677777777777664432 2 2334444444444 356888888887776543 23332 34
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005127 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (713)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 320 (713)
|.-|....++..-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+.-. .|.. .+-....+..|.+.+-+
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 55566666667777777788877753 44556778888888888877776666544 3322 11245566677777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 321 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
++|..+-..... +..+...+ +-..|++++|.+.+..+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 777665543322 23333333 345677888888877664
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.59 E-value=3.9 Score=40.50 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005127 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (713)
.++..++..+..+|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 345555666666666666666666665443 3355566666666666666666666666554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.54 E-value=7.3 Score=40.21 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
.+++.+..+|.+.+++..|+..-.+.+..+.. |...+-.-..+|...|+++.|+..|+.+.+.. +.|-.+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34556666677777777777777766665543 55555555666666777777777777766643 22333333344333
Q ss_pred HhcCCHH-HHHHHHHHHH
Q 005127 350 SNAKNWQ-KALELYEHMK 366 (713)
Q Consensus 350 ~~~g~~~-~A~~l~~~m~ 366 (713)
-+..... ...++|..|.
T Consensus 336 ~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 3333322 2345555554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.44 E-value=8.3 Score=38.60 Aligned_cols=113 Identities=10% Similarity=-0.030 Sum_probs=58.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHH----HHHHHcCCH
Q 005127 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM----KACANAGQV 250 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll----~~~~~~g~~ 250 (713)
.|...+|-..++++.+. .+.|...++..=.+|.-.|+.+.-...++++.. ...+|...|.-+= -++..+|-+
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip---~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP---KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc---ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 45666666666666654 455666666666677777776666666666553 2344443332222 222345555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (713)
Q Consensus 251 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (713)
++|++.-++..+.+ +.|.-+-.+....+--.|++.++.+..
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 55555555544443 223333334444444445555444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.12 E-value=23 Score=34.42 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.+..-|.+.|.+..|..-+++|.+. .+-+. ...-.|..+|...|..++|-+.-.-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3455677777777777777777765 22222 2344456677777777777666554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.94 E-value=11 Score=33.03 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=10.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 005127 240 LMKACANAGQVDRAREVYKMIHKY 263 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~ 263 (713)
++.+|.+.+++++|...++...+.
T Consensus 53 l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444444444444444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.91 E-value=6.1 Score=38.57 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=36.9
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHH
Q 005127 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWE 286 (713)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~ 286 (713)
+.|++..|.+.|......-.+-.-....+--|...+...|++++|..+|..+.+.-. +--+..+--|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555554432111111111233344445555555555555544443211 111233444444444444444
Q ss_pred HHHHHHHHHHHC
Q 005127 287 FACSVYDDMTKK 298 (713)
Q Consensus 287 ~A~~l~~~m~~~ 298 (713)
+|...|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.84 E-value=45 Score=37.43 Aligned_cols=301 Identities=13% Similarity=0.093 Sum_probs=170.6
Q ss_pred HHcCCCCCHHHHH-----HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhC
Q 005127 119 QEAGLKADCKLYT-----TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSK 191 (713)
Q Consensus 119 ~~~g~~pd~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~ 191 (713)
...|++.+..-|. .+|+-+...+.+..|.++-..+...-.. +..+|.....-+.+..+. +++++..++=.+.
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 3456666655554 4567777788888898887776522111 156666666666665322 2333333322222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Q 005127 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKACANAGQVDRAREVYKMIHKYN----- 264 (713)
Q Consensus 192 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----- 264 (713)
.. .+.++|..+.+-....|+.+-|..+++.=......+ --+..-+...+.-+.+.|+.+....++-++...-
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 12 345678888877778899999988886432221111 1122334556667777888887777776654431
Q ss_pred ------CCCCHHHHHHHHH---------HHHhcCCHHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHHhcCCHH--
Q 005127 265 ------IKGTPEVYTIAIN---------CCSQTGDWEFACSVYD--DMT----KKGVIPDEVFLSALIDFAGHAGKVE-- 321 (713)
Q Consensus 265 ------~~~~~~~~~~li~---------~~~~~g~~~~A~~l~~--~m~----~~g~~p~~~t~~~li~~~~~~g~~~-- 321 (713)
.+.....|.-++. .|-+..+. ++...|. ... ..+..|+. .....++++.....
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e 657 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFE 657 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhH
Confidence 1111122222221 11111112 2222111 100 11333332 33334444443311
Q ss_pred -HH-------HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH
Q 005127 322 -AA-------FEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (713)
Q Consensus 322 -~a-------~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 392 (713)
+| ..+.+.+..+ |......+.+--+.-+...|+..+|.++-.+.+ -||...|---+.+++..+++++
T Consensus 658 ~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 658 AKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHH
Confidence 11 1222222221 322333445555666778899999999988877 7999999999999999999988
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (713)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 435 (713)
-.++-+.++ .++-|.-...+|.+.|+.++|.+++.+.
T Consensus 734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 777665543 2466777889999999999999998654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.66 E-value=21 Score=33.47 Aligned_cols=202 Identities=17% Similarity=0.134 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005127 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (713)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 277 (713)
..+......+...+.+..+...+...... .........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 33444444444455555554444443320 0112223334444444444455555555555544433221 111111222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005127 278 -CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (713)
Q Consensus 278 -~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 354 (713)
.+...|+++.|...|.+...... ......+......+...++.+.+...+..............+..+...+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 55666666666666666544211 112233333333455667777777777776665322135667777777777778
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 005127 355 WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (713)
Q Consensus 355 ~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (713)
++.|...+...... .|+ ...+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888777654 233 344444444555666788888877777653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.37 E-value=36 Score=35.75 Aligned_cols=57 Identities=12% Similarity=0.227 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLA 221 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 221 (713)
+|...|+.-.+..-++.|..+|-+..+.| +.+++..++++|.-++ .|+...|..+|+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ife 456 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFE 456 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHH
Confidence 34444444444444555555555555444 3444444555444333 234444444444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.33 E-value=39 Score=36.14 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 131 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
..|..++-+.|+.++|.+.|.+|.+.... -+..+...|+.++...+.+.++..++.+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34555555667777777777776653211 123355566667777777777776666654
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=88.23 E-value=25 Score=37.31 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhhCC---CCC---HHHHHHHHHHHH---------hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005127 75 KAIKEAFRFFKLVP---NPT---LSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (713)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~---~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 139 (713)
-..+.|+.+|.+.. +-| ...|..+-..+. ...+..+|.++.++..+.+ +.|......+..+..-
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 35567777777654 222 333333322211 1234556777777777776 6688888888887788
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHH
Q 005127 140 SGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNALITACGQSGAVDR 215 (713)
Q Consensus 140 ~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~ 215 (713)
.++++.|..+|++....+ || ..+|....-...-+|+.++|.+.+++..+. .|.. ......+..|+.++ ++.
T Consensus 351 ~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~ 425 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKN 425 (458)
T ss_pred hcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhh
Confidence 888999999999888763 44 445555555566689999999999886654 3332 22233344666554 667
Q ss_pred HHHHHHH
Q 005127 216 AFDVLAE 222 (713)
Q Consensus 216 A~~~~~~ 222 (713)
|.++|-+
T Consensus 426 ~~~~~~~ 432 (458)
T PRK11906 426 NIKLYYK 432 (458)
T ss_pred hHHHHhh
Confidence 7776643
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.81 E-value=2.1 Score=28.93 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=9.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 005127 240 LMKACANAGQVDRAREVYKMIHK 262 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~ 262 (713)
+...|.+.|++++|.++|+...+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.09 E-value=51 Score=36.06 Aligned_cols=132 Identities=10% Similarity=0.152 Sum_probs=92.9
Q ss_pred CCcchhHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHH
Q 005127 23 HDVSEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTF 95 (713)
Q Consensus 23 ~~~~~~~~~~~~L~~~g----~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~ 95 (713)
...+.+...|..|+..+ ..+.+..++..++.. .|....+...+...=.+.|..+.+.++|++.. +-++..|
T Consensus 39 ~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW 116 (577)
T KOG1258|consen 39 SNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLW 116 (577)
T ss_pred ccchhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 33466777788888433 334455566666654 37777777777777788899999999999743 4566677
Q ss_pred HHHHHHHH-hCCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005127 96 NMLMSVCA-SSKDSEGAFQVLRLVQEA-GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 96 ~~li~~~~-~~g~~~~A~~l~~~m~~~-g~~-pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
...+..+. ..|+.+.....|+..+.. |.. .....|...|..-..++++.....+|++..+.
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 77665544 567888888888877753 221 13446777777777888999999999999864
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.06 E-value=14 Score=34.25 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH--HH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP-DRVVFN--AL 203 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~--~l 203 (713)
.+..+...|.+.|+.+.|.+.|.++......+. ...+-.+|+.....+++..+.....+....--.+ |...-| ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666666666666666666655432222 2244555666666666666666555543321111 111111 11
Q ss_pred HH--HHHhcCCHHHHHHHHHHhhh
Q 005127 204 IT--ACGQSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 204 i~--~~~~~g~~~~A~~~~~~m~~ 225 (713)
.. .+...+++..|-+.|-+...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 11 12345677777777766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.05 E-value=2.2 Score=28.88 Aligned_cols=30 Identities=7% Similarity=-0.043 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 300 (713)
+|..+...|...|++++|.++|++..+...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 455666666777777777777777666543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.03 E-value=24 Score=32.15 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (713)
Q Consensus 257 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 311 (713)
.+.+.+.+++++...|..+|+.+.+.|++. .+.++...++.||.......+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHH
Confidence 334445556666666666666666666543 334444455555555544444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.57 E-value=32 Score=33.16 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=11.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Q 005127 95 FNMLMSVCASSKDSEGAFQVLRLV 118 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m 118 (713)
|.-...+|....++++|...+.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 334444444455555554444333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=86.51 E-value=47 Score=35.07 Aligned_cols=400 Identities=11% Similarity=0.097 Sum_probs=217.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhh----CC---C-----------CCHHHHHHHHH
Q 005127 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VP---N-----------PTLSTFNMLMS 100 (713)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~---~-----------~~~~~~~~li~ 100 (713)
.+++.....+..+.+.. |....++..-+-.+.+.+.+++|+..+.. .. + +|...=+..+.
T Consensus 59 ~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hhHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 34444444444554443 43333333333445667788888877642 11 1 12222345567
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcC--------ChhHHHHHHH-------HHHHC-----
Q 005127 101 VCASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSG--------KVDAMFEVFH-------EMVNA----- 156 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~~----pd~~~~~~li~~~~~~g--------~~~~A~~~~~-------~m~~~----- 156 (713)
.+...|++.++..+++++...=++ -+..+|+.++-.+++.= ..+-+-..|+ +|...
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y 216 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY 216 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence 788999999999999988865444 68889998777776641 1111111111 11110
Q ss_pred -CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC-
Q 005127 157 -GIEPNVHTYGALIDGCAKA--GQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEV-HPV- 230 (713)
Q Consensus 157 -g~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~pd~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~- 230 (713)
.+.|-......++....-- .+..--.+++..-...-+.|+-. +...|+..+.. +.+++..+-+.+.... ..+
T Consensus 217 ~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lk 294 (549)
T PF07079_consen 217 EKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLK 294 (549)
T ss_pred HhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHH
Confidence 1122222222222222111 11111222222223333455532 22334444443 3444444443332210 000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 005127 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-----EVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVI 301 (713)
Q Consensus 231 ~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~ 301 (713)
+.-..++..++....+.++...|.+.+..+.-.+...+. .+-..+.+..+. .-+...=+.+|+.....++.
T Consensus 295 e~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 295 EELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 112457888888999999999999988877654422110 011222333331 12234445666666665542
Q ss_pred CCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCC
Q 005127 302 PDEVFLSALID---FAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLM----GACSN---AKNWQKALELYEHMKSIKL 370 (713)
Q Consensus 302 p~~~t~~~li~---~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~~~ 370 (713)
.......++. -+-+.|. -++|+.+++.+.+-. .-|...-|.+. ..|.. ...+..-..+-+-+.+.|+
T Consensus 375 -rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 375 -RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred -HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 1122222333 2334454 788999999887753 33444433332 33332 3445666666667778888
Q ss_pred CCCHH----HHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005127 371 KPTVS----TMNALITA--LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (713)
Q Consensus 371 ~p~~~----~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 444 (713)
.|-.+ .-|.|..+ +..+|++.++.-.-..+.+ +.|+..+|..+.-+.....++++|+.++.. ++|+.
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~ 525 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNE 525 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCch
Confidence 77443 34445443 4578999999876666665 789999999998888999999999999854 57788
Q ss_pred HHHHHHH
Q 005127 445 VMFKCII 451 (713)
Q Consensus 445 ~~~~~li 451 (713)
.++++=+
T Consensus 526 ~~~dskv 532 (549)
T PF07079_consen 526 RMRDSKV 532 (549)
T ss_pred hhHHHHH
Confidence 8877765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.41 E-value=26 Score=31.92 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=67.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005127 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (713)
Q Consensus 183 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 262 (713)
+..+.+.+.+++|+...+..++..+.+.|.+....+++.- ++-+|.......+-.+. +....+.++=-.|.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 3444555566777777777777777777776665555432 23344333332221111 122222222222222
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 263 Y-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 263 ~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
+ + ..+..+++.+...|++-+|+++.+..... +......++++..+.++...-..+++...+
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2 24556666777777777777777664322 112234455565556665554455544443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=86.20 E-value=52 Score=35.28 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 310 LIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
+..++-+.|+.++|.+.+.+|.+.... .+..+...|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333344455555555555555443211 12234444555555555555555555544
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.11 E-value=82 Score=37.50 Aligned_cols=131 Identities=15% Similarity=0.200 Sum_probs=74.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF----AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 276 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~----~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
++.--+.|.+.+|+.++ .|+...+.-+..+ +.....+++|--.|...-+ ..-.+.+|-.
T Consensus 915 ~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~ 977 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKE 977 (1265)
T ss_pred HHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHH
Confidence 33333444455554444 3455444444433 3445566666555543211 1233566777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 352 AKNWQKALELYEHMKSIKLKPTVST--MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (713)
+|+|++|..+..++.. ..|... --.|+.-+...+++-+|-++..+.... | .-.+..+++...+++|.
T Consensus 978 ~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 978 CGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred hccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHH
Confidence 8888888888777752 222222 256777788888888888888776542 2 22334456666777777
Q ss_pred HHHHH
Q 005127 430 MLLSQ 434 (713)
Q Consensus 430 ~~~~~ 434 (713)
++-..
T Consensus 1047 rva~~ 1051 (1265)
T KOG1920|consen 1047 RVASK 1051 (1265)
T ss_pred HHHHh
Confidence 66543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.05 E-value=10 Score=41.06 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCCh
Q 005127 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (713)
Q Consensus 29 ~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 108 (713)
+.-|..++-.|+++.|-.++..+.+ ..+..+..+..++|-.++|+.+- +.||- - .....+.|++
T Consensus 590 vleyqt~vmrrd~~~a~~vLp~I~k--------~~rt~va~Fle~~g~~e~AL~~s---~D~d~-r----Felal~lgrl 653 (794)
T KOG0276|consen 590 VLEYQTLVLRRDLEVADGVLPTIPK--------EIRTKVAHFLESQGMKEQALELS---TDPDQ-R----FELALKLGRL 653 (794)
T ss_pred HHHHHHHhhhccccccccccccCch--------hhhhhHHhHhhhccchHhhhhcC---CChhh-h----hhhhhhcCcH
Confidence 3344555566666666655444332 22334455555666666665542 11211 1 1223345666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005127 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 188 (713)
+.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-...
T Consensus 654 ~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 654 DIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred HHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH
Confidence 66665554332 344566666666666666666666655442 445555555566655444444444
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (713)
Q Consensus 189 ~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (713)
.+.|. .|.-.-+|...|+++++.+++.+
T Consensus 719 ~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 719 KKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred Hhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 44431 12222344555666666666544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=85.95 E-value=43 Score=34.19 Aligned_cols=166 Identities=12% Similarity=0.037 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCCHH
Q 005127 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKYNI-----KGTPE 270 (713)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~ 270 (713)
.|..+.+++-+..++.+++.+-..-... .|..|- -....++..++.-.+.++++++.|+...+.-. .....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3444445555545555555544332221 122221 12223344556666677777777775543211 11235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFL-----SALIDFAGHAGKVEAAFEILQEAKN----QGISV 337 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~-----~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~ 337 (713)
+|..|-+.|.+..++++|+-+..+..+ -++.--..-| ..+.-++...|.+.+|.+.-++..+ .|-.+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677788888888888877766554432 2222111112 2233355666777666666555433 33221
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 338 -GIISYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 338 -~~~~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
-......+.+.|...|+.+.|+.-|++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1233455667777788887777766654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.67 E-value=66 Score=36.00 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHH---HHhhHHHHHHHHHhhhCCC--------CCHHHHHHHHHHHHhCC---
Q 005127 41 ISECIDLLEDMERKGLLDMDKVYHARFFNV---CKSQKAIKEAFRFFKLVPN--------PTLSTFNMLMSVCASSK--- 106 (713)
Q Consensus 41 ~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g--- 106 (713)
..+|.+.++...+.|.. ...+..-+.-. .....+++.|+.+|+.+.. -+....+-+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~--~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS--EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhcch--HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 56677777777766632 11111111111 1234566666666654321 12223344444444422
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcCCHH
Q 005127 107 --DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA----KAGQVA 179 (713)
Q Consensus 107 --~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~ 179 (713)
+.+.|..++...-+.| .|+...+-..+..... ..+...|.++|...-+.|.. .. +-.+..+|. ...+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A--~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LA--IYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HH--HHHHHHHHHhCCCcCCCHH
Confidence 4455666666666555 3343333222222222 23455666666666665522 11 111111211 123455
Q ss_pred HHHHHHHHHHhCC
Q 005127 180 KAFGAYGIMRSKN 192 (713)
Q Consensus 180 ~A~~l~~~m~~~g 192 (713)
.|..+|.+.-+.|
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 6666666665555
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=85.60 E-value=26 Score=35.71 Aligned_cols=127 Identities=17% Similarity=0.065 Sum_probs=78.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHH-
Q 005127 310 LIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----IKLKPTVSTMNA- 379 (713)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p~~~~~~~- 379 (713)
+-.+....+.++++++.|+...+.- ......+|.+|-..|.+..++++|.-+..+..+ .++..-..-|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4455555666778887777665431 122346788888888888888887766655432 222111122332
Q ss_pred ----HHHHHHhCCChhHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 380 ----LITALCDGDQLPKTMEVLSDMK----SLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 380 ----li~~~~~~g~~~~A~~l~~~m~----~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
|.-+|...|...+|.+.-++.. ..|-+|. ......+.+.|...|+.|.|+.-|++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 4456777888888887777643 3343332 2334456678888999999888877654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=85.51 E-value=55 Score=34.91 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=10.1
Q ss_pred hcCCHHHHHHHHHHHHH
Q 005127 37 RQGRISECIDLLEDMER 53 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~ 53 (713)
+.|++-.-.++++.+..
T Consensus 46 n~grVVSRdeLle~VWg 62 (458)
T PRK11906 46 SAGHVVLKDMIIESVWK 62 (458)
T ss_pred CCCceEcHHHHHHHhcC
Confidence 45666566666666654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.29 E-value=65 Score=36.54 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=34.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH---
Q 005127 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN--- 246 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~--- 246 (713)
..+.-.|+++.|++.+-+ ..+...|.+.+...+.-|+-.+-.+... ..+.....+ .|...-+..||..|++
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~-~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPG-DPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCC-CCCCcCHHHHHHHHHHHHh
Confidence 344456777777777665 1222445555554444333221111111 111111001 1112456677777765
Q ss_pred cCCHHHHHHHHHHHHhc
Q 005127 247 AGQVDRAREVYKMIHKY 263 (713)
Q Consensus 247 ~g~~~~A~~~~~~m~~~ 263 (713)
..++.+|.++|-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 34566777766655544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.68 E-value=46 Score=33.39 Aligned_cols=234 Identities=14% Similarity=0.057 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHCCCCCCHH
Q 005127 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEPNVH 163 (713)
Q Consensus 88 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~ 163 (713)
.++|.......+.++...|..+ +...+..+.. .+|...-...+.+++..|+. +++...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 3566666666666666665432 3333333332 34555666666667776653 3456666555332 45555
Q ss_pred HHHHHHHHHHHcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 005127 164 TYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (713)
Q Consensus 164 ~~~~li~~~~~~g~~-----~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~ 238 (713)
+-...+.++...+.. ..+...+..... .++..+-...+.++++.++ +++...+..+.. .+|..+-.
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~VR~ 177 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGDVRN 177 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHHHHH
Confidence 555555555554321 223333333222 2244444455566666655 344455444443 23333444
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 239 ALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (713)
Q Consensus 239 ~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 317 (713)
..+.++.+.+ +-..+...+..+.. .++..+-...+.++.+.++. .|+..+-+..+.+. .....+.+++..
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~i 248 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhc
Confidence 4444444432 12334444433332 23445556666666666653 44444444444322 123455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (713)
Q Consensus 318 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 348 (713)
|.. +|...+..+.+.. +|..+-...+.+
T Consensus 249 g~~-~a~p~L~~l~~~~--~d~~v~~~a~~a 276 (280)
T PRK09687 249 GDK-TLLPVLDTLLYKF--DDNEIITKAIDK 276 (280)
T ss_pred CCH-hHHHHHHHHHhhC--CChhHHHHHHHH
Confidence 553 4555555555432 244444433333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.64 E-value=25 Score=31.58 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=25.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC
Q 005127 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (713)
+.+..+++..++..|.-.. |........-...+...|++.+|+++|+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4556666666666555433 4444333333444445555555555555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.43 E-value=58 Score=34.31 Aligned_cols=386 Identities=12% Similarity=0.106 Sum_probs=193.7
Q ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005127 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (713)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 134 (713)
|.+..-...+++.+..++..++..+.++++..|-+ .+|..-+++=...+++.....+|.+.....+. ...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 67777777788888889999999999998876643 47888888877788999999999888876444 44555555
Q ss_pred HHHHHcCCh------hHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhCCCCCCH
Q 005127 135 TTCAKSGKV------DAMFEVFHEMVN-AGIEPN-VHTYGALIDGCA---------KAGQVAKAFGAYGIMRSKNVKPDR 197 (713)
Q Consensus 135 ~~~~~~g~~------~~A~~~~~~m~~-~g~~~~-~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~pd~ 197 (713)
+--.+.+.. ....+.|+-... .+++|- ...|+..+...- .+.+++...+.|.+|...-+.-=.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 544333211 122234444333 344443 334554443322 233456666677777654211111
Q ss_pred HHHHH------HH-HHHHh--cC----CHHHHHHHHHHhhhCCCCCCC----CHHHHH-----------HHHHHHHHc--
Q 005127 198 VVFNA------LI-TACGQ--SG----AVDRAFDVLAEMNAEVHPVDP----DHITIG-----------ALMKACANA-- 247 (713)
Q Consensus 198 ~~~~~------li-~~~~~--~g----~~~~A~~~~~~m~~~~~~~~p----d~~~~~-----------~ll~~~~~~-- 247 (713)
..|+- =+ ++-++ .| -+-.|.+.+++...-..|+.. +..+++ ..|+.-...
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 11211 11 11111 01 134555555554332222211 111111 122211111
Q ss_pred ---CC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------H----
Q 005127 248 ---GQ--VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--------------E---- 304 (713)
Q Consensus 248 ---g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~---- 304 (713)
|+ .....-+|++.... +...+.+|----..+...++-+.|+.....-... .|. .
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~lse~yel~nd~e~v~ 353 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMFLSEYYELVNDEEAVY 353 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchheeHHHHHhhcccHHHHh
Confidence 11 11111222222221 1222344444444444555555555554432221 111 0
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHH------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH
Q 005127 305 VFLSALIDFAGH---AGKVEAAFEI------LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTV 374 (713)
Q Consensus 305 ~t~~~li~~~~~---~g~~~~a~~~------~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~ 374 (713)
.+|..++..+.+ .++.+.+... ..++.-+....-..+|..+++.-.+..-++.|+.+|-+..+.+ +.+++
T Consensus 354 ~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~v 433 (660)
T COG5107 354 GCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHV 433 (660)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcce
Confidence 011112211111 1111111100 0110000001124567777877777778888888888888777 56788
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 005127 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCII 451 (713)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li 451 (713)
..++++|.-++. |+..-|..+|+--... .||...| .-.+.-+...++-+.|+.+|+..+.. +..+ ..+|..+|
T Consensus 434 yi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi 509 (660)
T COG5107 434 YIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMI 509 (660)
T ss_pred eeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHH
Confidence 888888887764 6677788888763332 4554443 35566667778888888888755432 1122 34566666
Q ss_pred H
Q 005127 452 G 452 (713)
Q Consensus 452 ~ 452 (713)
+
T Consensus 510 ~ 510 (660)
T COG5107 510 E 510 (660)
T ss_pred H
Confidence 4
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.98 E-value=42 Score=32.35 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=5.5
Q ss_pred cCCHHHHHHHHHH
Q 005127 282 TGDWEFACSVYDD 294 (713)
Q Consensus 282 ~g~~~~A~~l~~~ 294 (713)
..++..|.+.++.
T Consensus 203 ~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 203 AHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHHHHHhcc
Confidence 3344444444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.96 E-value=12 Score=34.69 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005127 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (713)
.+..+...|++.|+.+.|++.|.++......+. ...+-.+|......+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555556666666666666666554432222 2233445555555555555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.32 E-value=32 Score=32.90 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=10.1
Q ss_pred hcCCHHHHHHHHHHHHhCCC
Q 005127 351 NAKNWQKALELYEHMKSIKL 370 (713)
Q Consensus 351 ~~g~~~~A~~l~~~m~~~~~ 370 (713)
..+++.+|.++|++.....+
T Consensus 166 ~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555554433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.15 E-value=16 Score=36.32 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005127 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (713)
Q Consensus 303 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 377 (713)
...+...++..-....+++++...+-.++... ..+ +.+++-.++. .-+.++++.++..=.+.|+-||..++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhhH
Confidence 34444445544444555666666555554331 111 1222222221 12445566665555556666666666
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 378 NALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
+.+|+.+.+.+++.+|.++.-.|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666555543
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=82.74 E-value=48 Score=37.22 Aligned_cols=147 Identities=10% Similarity=0.102 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005127 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (713)
Q Consensus 289 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 368 (713)
....+.+...-...+.....-++..|.+.|..+.|.++.+.+-.+-. ...-|..-+..+.++|+......+-+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll-- 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL-- 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 33444444433334666677788888888888888888776644321 12345555556666666655555444443
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005127 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CERKDDVEVGLMLLSQAKEDGVIPNLV 445 (713)
Q Consensus 369 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a---~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (713)
..|+..|... ..++.+.+....+..+.-+|-+.+.= ..+.|+..+|.+.+-.+.+.++.|...
T Consensus 466 -------------~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 466 -------------EEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------HHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 2333333211 11111111111011111122111111 123477777777777777777778777
Q ss_pred HHHHHHHH
Q 005127 446 MFKCIIGM 453 (713)
Q Consensus 446 ~~~~li~~ 453 (713)
-...|.++
T Consensus 532 ~~~LL~d~ 539 (566)
T PF07575_consen 532 WPLLLCDA 539 (566)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 66666554
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.67 E-value=33 Score=30.18 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=43.4
Q ss_pred HHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005127 101 VCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
...+.|++++|.+.|+.+..+-. +-...+.-.|+.+|.+.+++++|...+++.++....--..-|-..+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34556777777777777766521 112344556777777777777777777777765432222344444555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=82.53 E-value=3 Score=26.71 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 005127 165 YGALIDGCAKAGQVAKAFGAYGI 187 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~ 187 (713)
|+.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555666666666665555
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=82.45 E-value=37 Score=30.55 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=23.9
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005127 103 ASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
.+.++.+.+..++..+.-. .|.. .++. ...+...|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFD--GWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555555433 2221 1222 22234556666666666665544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.37 E-value=15 Score=36.63 Aligned_cols=101 Identities=14% Similarity=0.198 Sum_probs=74.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005127 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (713)
Q Consensus 334 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (713)
|.+....+...++..-.....++.+...+-++.... ..|+ ..+|- -++-.-++++++.++..=+.-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~i----rlllky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWI----RLLLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHH----HHHHccChHHHHHHHhCcchhccccc
Confidence 445555666666666666778899998888876531 1122 22332 23334578899999999899999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 409 TITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.+|++.+++.+.+.+++.+|.++.-.|+..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999888777654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=82.26 E-value=2.9 Score=26.79 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=12.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHH
Q 005127 377 MNALITALCDGDQLPKTMEVLSD 399 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~ 399 (713)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.20 E-value=17 Score=32.04 Aligned_cols=65 Identities=9% Similarity=0.005 Sum_probs=43.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCC-HHHHHHHHHHHH
Q 005127 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNMLMSVCA 103 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 103 (713)
..++++++..+++.|.-.. |....+...-...+...|++++|+++|+.+.... ...|..-+.++|
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 5788888888888887654 6666666656667777888888888888776432 334444444333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.78 E-value=27 Score=28.57 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 005127 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~ 455 (713)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+-++.. |-. ...|..++.-+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqElk 90 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQELK 90 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHHh
Confidence 55666777777889999999999999999999999999999988754 433 338888886543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.33 E-value=46 Score=30.29 Aligned_cols=124 Identities=18% Similarity=0.185 Sum_probs=70.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH--HHHhcCC
Q 005127 244 CANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV-FLSALID--FAGHAGK 319 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~--~~~~~g~ 319 (713)
.++.+..++|+.-|..+.+.|...-+.. --.+.....+.|+-..|...|++.-.....|-.. -...|=. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3556666777777777777665332221 1223344556677777777777776655445433 1112212 2345666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005127 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 320 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
+++.....+.+...+-+.....-.+|.-+-.|.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 766666665555444344444455666666677777777777777654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.9 bits (203), Expect = 2e-16
Identities = 26/209 (12%), Positives = 56/209 (26%), Gaps = 2/209 (0%)
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
P L+ + G + + A C + + A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 220 LAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
L A+M A G V M+ + Y A+ C
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 279 CSQTGDWEFACSVY-DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
+ + M+++G+ +F + L+ A ++A ++
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMK 366
++ S L+ +L+ +K
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.4 bits (199), Expect = 6e-16
Identities = 33/240 (13%), Positives = 78/240 (32%), Gaps = 4/240 (1%)
Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
E + + + ++ + + L A ++ A +L
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 329 EAKNQ---GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
Q + + Y+++M + +++ + + +K L P + + A + +
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 386 DGDQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
DQ T+E L M GL + ++LL +R ++ + +P
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 445 VMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
V ++ + + H+ + LA V ++ T+P+ EV
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEV 331
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.7 bits (192), Expect = 4e-15
Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 6/189 (3%)
Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA---FGA 184
+ L+ +D + A + A C Q+ A
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
+ R K ++NA++ + GA VL + + PD ++ A ++
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSYAAALQCM 210
Query: 245 ANAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
Q + + + +K + ++ + + V + +P
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
Query: 304 EVFLSALID 312
V S L+
Sbjct: 271 PVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.7 bits (192), Expect = 4e-15
Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 6/169 (3%)
Query: 72 KSQKAIKEAFRFFKLV--PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKAD 126
K +++A + C + A +L +
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY- 185
+Y ++ A+ G + V + +AG+ P++ +Y A + + Q A
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
M + +K + L++ ++ + V + P +
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.4 bits (186), Expect = 2e-14
Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 4/184 (2%)
Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWE 286
+ + A K C Q+ A + + H K T ++Y + ++ G ++
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSL 345
V + G+ PD + +A + G + L++ +G+ + + + L
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
+ A + ++ P + L+ + D ++ +K+L
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
Query: 406 CPNT 409
Sbjct: 303 LFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.2 bits (144), Expect = 2e-09
Identities = 28/201 (13%), Positives = 65/201 (32%), Gaps = 3/201 (1%)
Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
A + + S + L+ + +L + A
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 382 TALCDGDQLPKTMEVL---SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
DQLP +L + Y+ +++ R+ + + +L K+
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 439 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 498
G+ P+L+ + + R+ + A T+ + + +++ +T++ L A V
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 499 IPTVEVVSKVLGCLQLPYNAD 519
+ V+ + L P N
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTS 275
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 6e-13
Identities = 93/664 (14%), Positives = 184/664 (27%), Gaps = 197/664 (29%)
Query: 18 HANYAH---DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
H ++ H + E + Y D+L E + + D +V
Sbjct: 1 HHHHHHMDFETGEHQYQYK------------DILSVFEDAFVDNFD------CKDVQDMP 42
Query: 75 KAI--KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYT 131
K+I KE + + T + ++ + ++ V + V+E L+ + K L +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE-----MVQKFVEEV-LRINYKFLMS 96
Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGI--------------------------EPNVHTY 165
+ T + + M+ + + NV
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 166 GALIDGCAK---AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
G L G K A V ++ + + ++ + + + VL
Sbjct: 157 GVL--GSGKTWVALDVCLSY------KVQCKMDFKIFW---LNL----KNCNSPETVLEM 201
Query: 223 MNAEVHPVDPDHITIGALMKAC---ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
+ ++ +DP+ + ++ Q R + K Y + +N
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKS-KPY-----ENCLLVLLNVQ 254
Query: 280 SQTGDWE---FAC---------SVYD------------DMTKKGVIPDEVFLSALIDFAG 315
+ W +C V D D + PDEV S L+ +
Sbjct: 255 NAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLD 312
Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKN-WQKALELYEHMKSIKLKPT 373
++ +E + + S++ + W ++H+ KL
Sbjct: 313 C-----RPQDLPREVL--TTNPRRL---SIIAESIRDGLATWDN----WKHVNCDKLTTI 358
Query: 374 V-STMNAL--------------------ITA--LC---DGDQLPKTMEVLSDMKSLGLC- 406
+ S++N L I L M V++ + L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 407 --PNTITYSI----LLVACERKDDVEVGLMLLSQ-------AKEDGVIPNLVM-FKCIIG 452
P T SI L + + +++ + ++ +D + P L F IG
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 453 ---MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
E+ L F +E K + + T++ +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRF----LEQK---IRHDSTAWNASGSILNTLQQLKF-- 529
Query: 510 GCLQLPY------NADIRERLVENLG----VSADALKRSNLCSLIDGFGEYDPRAFSLLE 559
Y N ERLV + + L S L+ + E
Sbjct: 530 ------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEA-IFE 581
Query: 560 EAAS 563
EA
Sbjct: 582 EAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 2e-10
Identities = 82/541 (15%), Positives = 149/541 (27%), Gaps = 182/541 (33%)
Query: 16 GKH---ANYAHDVSEQLHSYNRL--IRQGRISECIDLLEDMERKGLLDMDKVYHAR---F 67
GK + Q ++ + + +LE +++ L +D + +R
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHS 220
Query: 68 FNVCKSQKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKA 125
N+ +I+ R K P N L+ VL VQ A A
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYE-----NCLL--------------VLLNVQNAKAWNA 261
Query: 126 ---DCKLYTTLITTCAKS----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
CK L+TT K + + + + P+ +
Sbjct: 262 FNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-----------EVKSLL 307
Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-I 237
K + +P L EV +P ++ I
Sbjct: 308 LKYL---------DCRPQD----------------------LPR---EVLTTNPRRLSII 333
Query: 238 GALMKACANAGQVDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-----ACSV 291
++ A + +K N + ++N E+ SV
Sbjct: 334 AESIR-------DGLATWDNWK---HVNCDKLTTIIESSLNVLEPA---EYRKMFDRLSV 380
Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
+ IP + LS + ++ + SL
Sbjct: 381 FPPSAH---IPTIL-LSLIWF----DVIKSDVMVVVNKLHK----------YSL------ 416
Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
+ K + ++LK + AL ++ D +PK + +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-----------TFDSDDLI 465
Query: 412 --------YSIL---LVACERKDDVEVGLMLLS-----QAK---------EDGVIPNLVM 446
YS + L E + + + M+ + K G I N +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 447 ----FKCIIGMCSRRYEKARTLNEHVLSF--NSGRPQIENKWTSL---ALM-----VYRE 492
+K I +YE R +N +L F I +K+T L ALM ++ E
Sbjct: 526 QLKFYKPYICDNDPKYE--RLVNA-ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 493 A 493
A
Sbjct: 583 A 583
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 18/158 (11%), Positives = 51/158 (32%), Gaps = 6/158 (3%)
Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
+ K Y + + +V+ + ++ + + + E
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDARTRHHVY 393
Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
ALM+ + A +++++ K PE I+ S + +++ +
Sbjct: 394 VTAALMEYYCS-KDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERV 451
Query: 296 TKKGVIPDEV---FLSALIDFAGHAGKVEAAFEILQEA 330
G +P E + + F + G + + ++ +
Sbjct: 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 17/132 (12%), Positives = 46/132 (34%), Gaps = 8/132 (6%)
Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
+ ++ +Y + VY + + + ++ + V++
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394
Query: 308 -SALIDFAGHAGKVEAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEH 364
+AL+++ + AF+I + + + +++Y + S+ L+E
Sbjct: 395 TAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL---SHLNEDNNTRVLFER 450
Query: 365 -MKSIKLKPTVS 375
+ S L P S
Sbjct: 451 VLTSGSLPPEKS 462
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.65 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.64 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.62 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.6 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.54 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.48 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.42 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.42 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.42 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.42 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.42 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.4 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.39 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.39 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.39 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.36 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.31 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.29 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.27 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.27 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.27 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.25 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.23 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.22 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.2 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.2 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.2 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.18 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.18 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.14 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.12 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.09 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.08 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.06 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.06 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.0 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.97 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.96 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.94 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.93 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.91 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.83 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.79 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.78 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.76 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.74 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.74 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.72 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.68 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.68 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.67 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.67 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.67 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.64 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.62 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.61 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.55 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.55 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.53 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.53 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.53 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.53 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.52 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.49 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.49 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.48 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.48 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.43 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.43 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.41 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.3 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.27 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.27 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.26 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.25 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.22 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.21 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.21 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.19 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.17 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.17 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.15 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.14 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.13 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.13 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.13 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.13 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.13 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.12 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.11 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.11 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.1 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.09 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.09 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.08 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.05 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.01 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.99 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.98 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.96 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.95 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.93 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.93 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.92 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.91 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.88 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.86 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.84 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.82 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.82 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.81 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.79 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.79 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.77 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.76 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.76 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.75 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.75 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.75 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.75 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.75 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.74 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.67 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.63 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.56 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.51 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.5 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.47 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.43 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.41 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.39 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.38 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.38 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.37 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.33 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.32 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.29 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.27 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.27 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.13 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.1 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.09 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.09 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.07 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.97 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.97 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.87 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.82 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.76 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.72 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.71 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.63 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.62 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.48 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.36 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.26 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.13 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.01 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.77 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.6 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.54 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.91 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.78 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.75 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.68 | |
| 3fau_A | 82 | NEDD4-binding protein 2; SMR, small-MUTS related d | 94.62 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.49 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.49 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.38 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.93 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.9 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.21 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.17 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.95 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 92.58 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.25 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.87 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.55 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.16 | |
| 2d9i_A | 96 | NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 | 91.12 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 89.96 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 89.32 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.57 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.81 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 87.71 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 87.43 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.24 | |
| 2vkc_A | 135 | NEDD4-binding protein 2; human BCL3 binding protei | 85.29 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.22 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.76 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.33 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.0 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 80.58 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.53 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=322.98 Aligned_cols=416 Identities=8% Similarity=-0.044 Sum_probs=354.5
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC--CCCCHHHHHHHHH
Q 005127 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMS 100 (713)
Q Consensus 27 ~~~~~~~~L~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~ 100 (713)
++...|+.++ +.|++++|+.+|++|.... |+. .....++..+...|++++|+.+|+.+ .+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4566666555 7999999999999998755 544 44456888899999999999999988 4789999999999
Q ss_pred HHHhCCChHHHHHHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 005127 101 VCASSKDSEGAFQVLRLVQ-EA--------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~-~~--------------g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (713)
+|.+.|++++|..+|+++. .. |.+++..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 9999999999999998532 11 23346889999999999999999999999999987522 34443
Q ss_pred HH--------------------------------------HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 166 GA--------------------------------------LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (713)
Q Consensus 166 ~~--------------------------------------li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 207 (713)
.. ++.+|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 33 355667889999999999999865 57999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
.+.|++++|.++|+++.... +.+..+++.++.+|.+.|++++|..+|+.+.+.. +.+..+|+.++.+|.+.|++++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 99999999999999998642 3467789999999999999999999999998665 6678999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005127 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 288 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
|.++|+++.+.... +..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999886443 68899999999999999999999999998875 45788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005127 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (713)
Q Consensus 368 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 441 (713)
.. +.+..+|+.++..|.+.|++++|+++|++|.+. +..|+ ..+|..+..+|.+.|++++|..+|+++.+.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 54 457899999999999999999999999999875 67887 7899999999999999999999999998854 3
Q ss_pred CCHHHHHHHHHHHHh
Q 005127 442 PNLVMFKCIIGMCSR 456 (713)
Q Consensus 442 p~~~~~~~li~~~~r 456 (713)
.+..+|..+..+|.+
T Consensus 548 ~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 548 NDANVHTAIALVYLH 562 (597)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 477888888887654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=307.52 Aligned_cols=403 Identities=10% Similarity=0.012 Sum_probs=350.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCC-------------------CH
Q 005127 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-------------------TL 92 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~ 92 (713)
...+.+.|++++|+.+|+.+... +.+......++..+.+.|++++|+++|+++.+. +.
T Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 124 AQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhH
Confidence 34455899999999999988643 455667777889999999999999999964433 48
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH--------------------------------------HH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT--------------------------------------LI 134 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~--------------------------------------li 134 (713)
.+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+.. ++
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 899999999999999999999999999875 223333333 35
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (713)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 214 (713)
..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..+|+.++.+|.+.|+++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHH
Confidence 5667889999999999999866 5899999999999999999999999999999775 447888999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (713)
Q Consensus 215 ~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (713)
+|.++|+++... .+.+..+++.++.+|.+.|++++|.++|+.+.+.+ +.+..+|+.++.+|.+.|++++|+++|++
T Consensus 357 ~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 357 KLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999853 35578899999999999999999999999998865 55788999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 005127 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL 370 (713)
Q Consensus 295 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~ 370 (713)
+.+.+.. +..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +.
T Consensus 433 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 9987643 78899999999999999999999999998875 457899999999999999999999999999875 66
Q ss_pred CCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 005127 371 KPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMF 447 (713)
Q Consensus 371 ~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~ 447 (713)
.|+ ..+|+.++.+|.+.|++++|++.|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+. .|+ ...+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~ 587 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMAS 587 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHH
Confidence 787 7899999999999999999999999998864 348899999999999999999999999999984 454 3344
Q ss_pred HHH
Q 005127 448 KCI 450 (713)
Q Consensus 448 ~~l 450 (713)
..+
T Consensus 588 ~~l 590 (597)
T 2xpi_A 588 DLL 590 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=279.47 Aligned_cols=203 Identities=16% Similarity=0.247 Sum_probs=131.7
Q ss_pred HHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 005127 253 AREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VEA 322 (713)
Q Consensus 253 A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~---------~~~ 322 (713)
+..+.+.+.+.+....+. +++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 334444555555444433 4566666666666666666666666666666666666666666665443 566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 323 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.+++.+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777776654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=275.68 Aligned_cols=188 Identities=18% Similarity=0.279 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHH
Q 005127 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---------WEFACSVYDDMTKKGVIPDEV 305 (713)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~l~~~m~~~g~~p~~~ 305 (713)
..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. .++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34666777777777777777777777777777777777777777766544 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005127 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 385 (713)
||+++|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (713)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (713)
+.|+.++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-25 Score=234.06 Aligned_cols=376 Identities=13% Similarity=0.049 Sum_probs=277.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhCCChH
Q 005127 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (713)
Q Consensus 33 ~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~ 109 (713)
..+.+.|++++|++.++++.+.. |.+...+..+...+...|++++|..+++.. .+.+..+|..+..++.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 45678899999999999988876 677777777777788888888888887653 3557778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
+|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...|...|++++|...|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888887753 3456678888888888888888888888887764 2245566777777888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 005127 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (713)
Q Consensus 190 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 269 (713)
+.. +.+..+|+.+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|...|+...+.. +.+.
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 653 3356778888888888888888888888877531 2345567777777888888888888887777654 4456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
.++..+...|.+.|++++|...|+++.+.... +..++..+..++.+.|++++|...++.+.+.. +.+..+++.+...|
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 77778888888888888888888887776443 45677777777777888888888887777653 45677777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 005127 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERK 422 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 422 (713)
.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|++.|+++.+ +.|+ ...|..+...+...
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHc
Confidence 77888888888777776542 33466777777777777888888877777776 3453 44455554444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-23 Score=223.74 Aligned_cols=363 Identities=13% Similarity=0.079 Sum_probs=316.5
Q ss_pred HHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005127 68 FNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (713)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 144 (713)
...+.+.|++++|++.|..+ .+.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 34456788999999998865 34566778888888999999999999999988764 668889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005127 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (713)
+|.+.|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|.++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999998864 3356789999999999999999999999998763 3345667788889999999999999999998
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005127 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (713)
Q Consensus 225 ~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 304 (713)
.. .+.+..+|..+...|.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++....... +.
T Consensus 163 ~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 163 ET---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred Hh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 64 13357789999999999999999999999999876 567889999999999999999999999999887543 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (713)
Q Consensus 305 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 384 (713)
.++..+..+|...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|+.+...|
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 889999999999999999999999999875 4467889999999999999999999999998763 56789999999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005127 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (713)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 443 (713)
.+.|++++|++.|+++.+. .+.+..++..+..++.+.|++++|...|+++.+ +.|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 9999999999999999874 233678899999999999999999999999987 4454
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-20 Score=199.78 Aligned_cols=267 Identities=12% Similarity=0.062 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H---HHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-V---HTYG 166 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~---~~~~ 166 (713)
+..+|..+..++...|++++|...|+.+.+.+ +.+..++..+..+|.+.|++++|.+.|+++.+.. |+ . .++.
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~ 135 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQS 135 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHH
Confidence 45555555555555566666666665555543 3345555555566666666666666666555442 22 2 3333
Q ss_pred HHHH------------HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH
Q 005127 167 ALID------------GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (713)
Q Consensus 167 ~li~------------~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~ 234 (713)
.++. .+.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|.+.|.++... .+.+.
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 211 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL---KNDNT 211 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH---HCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCH
Confidence 3322 2455555555555555555432 234455555555555555555555555555432 12234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005127 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA------------INCCSQTGDWEFACSVYDDMTKKGVIP 302 (713)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p 302 (713)
.++..+..+|...|++++|...|+.+.+.. +.+...+..+ ...|.+.|++++|...|+++......
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~- 289 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS- 289 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 455555555555555555555555554432 2233333332 44555555555555555555443211
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005127 303 D----EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 303 ~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
+ ...+..+..++.+.|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 2244444555555555555555555544432 22345555555555555555555555555544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-20 Score=198.62 Aligned_cols=316 Identities=12% Similarity=0.037 Sum_probs=252.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (713)
+.+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..+|...|++++|.+.|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3466788999999999999999999999999864 5578899999999999999999999999999875 3468899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHH------------HHHhcCCHHHHHHHHHHhhhCCCCCCCC
Q 005127 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNALIT------------ACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (713)
Q Consensus 169 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~~~~~~pd 233 (713)
..+|.+.|++++|...|+++.... +.+. ..+..++. .+.+.|++++|.+.|+++... .+.+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~ 176 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVWD 176 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC
Confidence 999999999999999999998763 2233 55655543 488889999999999998764 2346
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL--- 310 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--- 310 (713)
..++..+..+|.+.|++++|..+|+.+.+.+ +.+..+|..+...|...|++++|+..|+++...... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 7788889999999999999999999888764 556889999999999999999999999998876432 34444444
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005127 311 ---------IDFAGHAGKVEAAFEILQEAKNQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (713)
Q Consensus 311 ---------i~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 377 (713)
...|.+.|++++|...|..+.+.... + ..++..+..+|.+.|++++|...++++.+.. +.+...|
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 67788888888888888888775321 2 3467788888888888888888888876542 3467888
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 005127 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILL 416 (713)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 416 (713)
..+..+|...|++++|++.|+++.+ +.|+ ...+..+.
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 8888888888888888888888877 4564 34444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-20 Score=202.99 Aligned_cols=402 Identities=10% Similarity=0.016 Sum_probs=311.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhCC
Q 005127 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSK 106 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g 106 (713)
..-+.+.+.|++++|+..|+++.+.+ | +...+..++..+...|++++|+..|+.+ .+.+..+|..+..++...|
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 34456679999999999999999987 5 4566777888888999999999999865 3567789999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------------------------------
Q 005127 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------------------------------ 156 (713)
Q Consensus 107 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------ 156 (713)
++++|...|+.+.+.+ +++......++..+........+.+.+..+...
T Consensus 88 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 9999999999999876 344444444444444332222222222111100
Q ss_pred -----CC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHH
Q 005127 157 -----GI---------EPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRS-----KNV--------KPDRVVFNALITA 206 (713)
Q Consensus 157 -----g~---------~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~--------~pd~~~~~~li~~ 206 (713)
.. +.+...+..+...+.. .|++++|+.+|+++.. ..- +.+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 00 0113444444444444 8999999999999987 311 1235677888899
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (713)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (713)
+...|++++|...|.++... .|+..++..+...|...|++++|...|+.+.+.. +.+..+|..+...|...|+++
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 99999999999999998764 3447788889999999999999999999998875 456788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 287 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
+|...|++....... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999887654 56788889999999999999999999988764 3456788999999999999999999999887
Q ss_pred hCCC-CCC----HHHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 367 SIKL-KPT----VSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 367 ~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
+... .++ ...|..+...|.. .|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...|+++.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5321 122 4488999999999 999999999999988752 336778888999999999999999999999884
Q ss_pred CCCCCHH
Q 005127 439 GVIPNLV 445 (713)
Q Consensus 439 g~~p~~~ 445 (713)
.|+..
T Consensus 479 --~~~~~ 483 (514)
T 2gw1_A 479 --ARTME 483 (514)
T ss_dssp --CSSHH
T ss_pred --ccccH
Confidence 45543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-19 Score=200.24 Aligned_cols=373 Identities=6% Similarity=-0.036 Sum_probs=288.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHh
Q 005127 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (713)
Q Consensus 28 ~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (713)
.......+.+.|++++|+..|+++.+.+ |.+...+..++..+...|++++|+..|+.+. +++......++..+..
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 3333455668999999999999999887 7777788888999999999999999998652 3344444444443333
Q ss_pred CCChHHHHHHHHHHHHc-----------------------------------CC---------CCCHHHHHHHHHHHHH-
Q 005127 105 SKDSEGAFQVLRLVQEA-----------------------------------GL---------KADCKLYTTLITTCAK- 139 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~-----------------------------------g~---------~pd~~~~~~li~~~~~- 139 (713)
......+.+.+..+... .. +.+...+..+...+..
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (514)
T 2gw1_A 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199 (514)
T ss_dssp HHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 22222222222111100 00 1113444444444444
Q ss_pred --cCChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005127 140 --SGKVDAMFEVFHEMVN-----AGI--------EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (713)
Q Consensus 140 --~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 204 (713)
.|++++|...|+++.+ ..- +.+..++..+...+...|++++|...|+++.+.. |+..++..+.
T Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~ 277 (514)
T 2gw1_A 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMA 277 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHH
Confidence 7999999999999987 311 2235678889999999999999999999998874 4488889999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 005127 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (713)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 284 (713)
..+...|++++|...++++... .+.+..++..+...|...|++++|...|+...+.. +.+..++..+...|...|+
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKL---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENK 353 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTT---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTC
T ss_pred HHHHHCCCHHHHHHHHHHHhhc---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCC
Confidence 9999999999999999998764 23456788999999999999999999999998876 4467899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHH
Q 005127 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VG----IISYSSLMGACSN---AKNWQ 356 (713)
Q Consensus 285 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~---~g~~~ 356 (713)
+++|...|+++.+.... +..++..+...+...|++++|...+..+.+.... ++ ..++..+...|.+ .|+++
T Consensus 354 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 354 FDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred HHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 99999999999876443 5678889999999999999999999998765311 11 4488999999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH
Q 005127 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (713)
Q Consensus 357 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (713)
+|...|+.+.+.. +.+..+|..+...|.+.|++++|.+.|++..+. .|+....
T Consensus 433 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 433 EATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHH
Confidence 9999999988753 446788999999999999999999999999884 5765443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-18 Score=193.02 Aligned_cols=391 Identities=12% Similarity=0.049 Sum_probs=287.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCCh
Q 005127 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 108 (713)
-+.+.+.|++++|+..|+++.+.. |.+...+..++..+...|++++|++.|+.+. +.+..+|..+...+...|++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH
Confidence 345568999999999999999887 7778888888899999999999999998753 56788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCCHHH------------------
Q 005127 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEPNVHT------------------ 164 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~------------------ 164 (713)
++|...|+ .... .|+. ....+..+...+....|...++.+... ...|+...
T Consensus 110 ~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 99999996 3322 2322 122234445555567788888877542 11222222
Q ss_pred ------------HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHH
Q 005127 165 ------------YGALIDGCAK--------AGQVAKAFGAYGIMRSKNVKPD-------RVVFNALITACGQSGAVDRAF 217 (713)
Q Consensus 165 ------------~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd-------~~~~~~li~~~~~~g~~~~A~ 217 (713)
...+...+.. .|++++|..+|+++.+.. +.+ ..++..+...+...|++++|.
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 1222222111 247888888888888763 222 234666667788888999999
Q ss_pred HHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 218 ~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
+.|.+.... .|+..++..+...|...|++++|...|+.+.+.. +.+..+|..+...|...|++++|...|++..+
T Consensus 264 ~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 264 VLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999888764 4567788888888889999999999999888765 55678888999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCC
Q 005127 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-----LKP 372 (713)
Q Consensus 298 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-----~~p 372 (713)
.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+.. ...
T Consensus 339 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 6543 45778888888999999999999999888764 4456788888889999999999999998876431 111
Q ss_pred CHHHHHHHHHHHHhC----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 373 TVSTMNALITALCDG----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 373 ~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
....+..+...|... |++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+++.+.
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 223344555667777 89999999999888752 335677888888999999999999999888874
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-16 Score=164.59 Aligned_cols=312 Identities=12% Similarity=0.065 Sum_probs=184.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
|+..+..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566677777778888888888888877764 4456777778888888888888888888877663 235677777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH
Q 005127 171 GCAKAGQVAKAFGAYGIMRSKNVKP----DRVVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~g~~p----d~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~ 234 (713)
.|...|++++|...|+++.+. .| +...+..+ ...+...|++++|.+.++++... .+.+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 154 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV---CVWDA 154 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCch
Confidence 888888888888888887765 33 33333333 24445555555555555554432 12234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (713)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 314 (713)
.++..+...|...|++++|...++.+.+.. +.+..+|..+...|...|++++|...|++..+.... +...+..+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~-- 230 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ-- 230 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH--
Confidence 444455555555555555555555554443 334445555555555555555555555554443221 1111111100
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhCCC
Q 005127 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-V----STMNALITALCDGDQ 389 (713)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~----~~~~~li~~~~~~g~ 389 (713)
+. .......+...+.+.|++++|...|+++.+.. |+ . ..|..+...|...|+
T Consensus 231 ---------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 231 ---------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp ---------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccC
Confidence 00 00111223555667777777777777766542 22 2 224445667777777
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 390 LPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
+++|++.|++..+. .| +..++..+..++...|++++|...|+++.+.
T Consensus 288 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 288 PVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777664 34 5666777777777777777777777777763
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-16 Score=162.08 Aligned_cols=309 Identities=12% Similarity=0.043 Sum_probs=212.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005127 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (713)
Q Consensus 126 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 205 (713)
|...+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567777888888888888888888887764 3367788888888888888888888888887653 335677888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 005127 206 ACGQSGAVDRAFDVLAEMNAEVHPVDP----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (713)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~p----d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 281 (713)
.+...|++++|...|.+.... .| +...+..+...+. ...+..+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 888888888888888887643 44 2223322211100 0123334556667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005127 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (713)
Q Consensus 282 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 361 (713)
.|++++|...|+++.+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776665432 55666667777777777777777777776653 44566777777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHH------------HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCC
Q 005127 362 YEHMKSIKLKPTVSTMN------------ALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-----TYSILLVACERKDD 424 (713)
Q Consensus 362 ~~~m~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~ 424 (713)
|+...+.. +.+...+. .+...+.+.|++++|++.|+++.+. .|+.. .+..+..++.+.|+
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccC
Confidence 77776542 22333333 3366789999999999999999875 35432 34456789999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHHHHHhh
Q 005127 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 469 (713)
Q Consensus 425 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~ 469 (713)
+++|...+++..+.. +.+...+..+..++.+ .+++|....+...
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999998852 2255666666666554 5666666554433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-17 Score=182.40 Aligned_cols=374 Identities=10% Similarity=0.011 Sum_probs=283.8
Q ss_pred CCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 005127 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (713)
Q Consensus 22 ~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (713)
|.++......-..+.+.|++++|++.|+++.+.+ |.+...+..++..+...|++++|+..|+.+. .+....+..+..
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~ 132 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEP 132 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------C
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHH
Confidence 4444555555566679999999999999999887 7777888888999999999999999997542 122222233444
Q ss_pred HHhCCChHHHHHHHHHHHHc------CCCCCHHH------------------------------HHHHHHHHH-------
Q 005127 102 CASSKDSEGAFQVLRLVQEA------GLKADCKL------------------------------YTTLITTCA------- 138 (713)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~------g~~pd~~~------------------------------~~~li~~~~------- 138 (713)
+...+....|...++.+... ...|+... ...+...+.
T Consensus 133 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (537)
T 3fp2_A 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence 55555667788888777542 11222221 122222211
Q ss_pred -HcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005127 139 -KSGKVDAMFEVFHEMVNAGIEPN-------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (713)
Q Consensus 139 -~~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 210 (713)
..+++++|..+|+++.+.... + ..++..+...+...|++++|...|+++... .|+..+|..+...+...
T Consensus 213 ~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHh
Confidence 124789999999999876422 2 235777778889999999999999999986 56688899999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005127 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (713)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 290 (713)
|++++|.+.|.++... .+.+..++..+...|...|++++|...|+...+.+ +.+..+|..+...|...|++++|..
T Consensus 290 ~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDL---NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp SCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998764 23457789999999999999999999999998876 4466889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCH
Q 005127 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNA----------KNW 355 (713)
Q Consensus 291 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~----------g~~ 355 (713)
.|+++.+.... +...+..+...+...|++++|...++.+.+.. .......+..+...|.+. |++
T Consensus 366 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 366 FFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 99999887543 56788899999999999999999999987642 112233455566778888 999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005127 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (713)
Q Consensus 356 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (713)
++|...|++..+.. +.+...|..+...|.+.|++++|.+.|++..+. .|+.
T Consensus 445 ~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~ 495 (537)
T 3fp2_A 445 NAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL--ARTM 495 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--C
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCc
Confidence 99999999998753 456788999999999999999999999999874 4543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-16 Score=160.19 Aligned_cols=281 Identities=12% Similarity=0.021 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 208 (713)
.+..+...+...|++++|.++|+++.+.. +.+..++..++..+...|++++|..+++++.+.. +.+...|..+...+.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 34444444445555555555555544432 1123334444444455555555555555554432 223444444555555
Q ss_pred hcC-CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 209 QSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 209 ~~g-~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
..| ++++|.+.|++.... .+.+..++..+...|...|++++|...|+...+.. +.+...+..+...|...|++++
T Consensus 102 ~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTL---EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTT---CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HhhhhHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 555 555555555554432 11223444455555555555555555555554433 2233444445555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKNWQKAL 359 (713)
Q Consensus 288 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~~~~~~~~~li~~~~~~g~~~~A~ 359 (713)
|...|++..+.... +...+..+...+...|++++|...+..+.+.. .+....++..+...|.+.|++++|.
T Consensus 178 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 55555555544322 34455555555555555555555555544321 1222445566666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 005127 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC 419 (713)
Q Consensus 360 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 419 (713)
..|++..+.. +.+...|..+...|...|++++|.+.|++..+. .| +...+..+..++
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 6666655432 234455666666666666666666666665542 34 344444444444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-14 Score=152.04 Aligned_cols=365 Identities=11% Similarity=0.006 Sum_probs=300.8
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHh----hHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHh----CCChHHHHHH
Q 005127 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (713)
Q Consensus 44 A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l 114 (713)
++..++...+.| +...+..+...+.. .++.++|+.+|+... ..+...+..|...|.. .+++++|...
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 355555555544 22333344445544 678899999988643 4577888888888988 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 005127 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFGAYG 186 (713)
Q Consensus 115 ~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~ 186 (713)
|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...+..|...|.. .+++++|+..|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998865 67778888888888 789999999999998875 67788888888887 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 005127 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYK 258 (713)
Q Consensus 187 ~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~A~~~~~ 258 (713)
+..+.| +...+..|...|.. .++.++|.+.|.+.... .+..++..+...|.. .+++++|...|+
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 998875 67888888888888 89999999999988763 356678888888886 889999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 005127 259 MIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQE 329 (713)
Q Consensus 259 ~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~a~~~~~~ 329 (713)
...+.+ ++..+..+...|.. .+++++|+..|++..+.| +...+..+...|... ++.++|...+..
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 988765 46778888888887 899999999999998775 456777788888877 899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHH
Q 005127 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKS 402 (713)
Q Consensus 330 m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 402 (713)
..+.+ +...+..|..+|.+.| +.++|.+.|++..+. .+...+..|...|.. .+++++|++.|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99876 4677888888888866 789999999999885 478889999999998 8999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 005127 403 LGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGVI 441 (713)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~ 441 (713)
.| +...+..+-..+.+ .++.++|...|++..+.+..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 56777778888887 89999999999999987643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-16 Score=158.45 Aligned_cols=292 Identities=14% Similarity=0.070 Sum_probs=238.5
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (713)
.+...+..+...+...|++++|..+|+.+.+.. +.+..++..++..+...|++++|..+++++.+.. +.+..+|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455566777788888899999999999988765 4455567777888889999999999999998864 33677888899
Q ss_pred HHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcC
Q 005127 170 DGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (713)
Q Consensus 170 ~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g 248 (713)
..|...| ++++|...|++..... +.+...|..+...+...|++++|.+.|.+..... +.+..++..+...|...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHh
Confidence 9999999 9999999999998764 4457788889999999999999999999887642 234567777888999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCH
Q 005127 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--------VIPDEVFLSALIDFAGHAGKV 320 (713)
Q Consensus 249 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~li~~~~~~g~~ 320 (713)
++++|...|+...+.. +.+..++..+...|...|++++|...|++..+.. ...+..++..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998876 5678899999999999999999999999887642 123457888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhCCCh
Q 005127 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQL 390 (713)
Q Consensus 321 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~~ 390 (713)
++|...++...+.. +.+..++..+...|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 99999999988765 4467889999999999999999999999987653 34677888888777 344543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-14 Score=159.85 Aligned_cols=394 Identities=11% Similarity=0.084 Sum_probs=263.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHH-HhCCChHHHH
Q 005127 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVC-ASSKDSEGAF 112 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~-~~~g~~~~A~ 112 (713)
.+.|++++|..+|+++.+.. |.+..+....+....+.|++++|..+|++.. .|++..|...+... ...|+.+.|.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHH
Confidence 46799999999999999765 7777777778888888899999999998754 46887888777533 3567777666
Q ss_pred H----HHHHHHHc-CCCC-CHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----
Q 005127 113 Q----VLRLVQEA-GLKA-DCKLYTTLITTCAK---------SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----- 172 (713)
Q Consensus 113 ~----l~~~m~~~-g~~p-d~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----- 172 (713)
+ +|+..... |..| +...|...+....+ .|+++.|..+|++..+.........|.......
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 5 66665543 5443 46677777776654 678899999999988732111123444332211
Q ss_pred --------HHcCCHHHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHH
Q 005127 173 --------AKAGQVAKAFGAYGIMR------SKN---VKPD--------RVVFNALITACGQS----GAV----DRAFDV 219 (713)
Q Consensus 173 --------~~~g~~~~A~~l~~~m~------~~g---~~pd--------~~~~~~li~~~~~~----g~~----~~A~~~ 219 (713)
.+.+++..|..++.++. +.. ++|+ ...|...+...... ++. ..+..+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 12345667776666532 211 2343 23455544333221 222 366677
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 005127 220 LAEMNAEVHPVDPDHITIGALMKACAN-------AGQVD-------RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (713)
Q Consensus 220 ~~~m~~~~~~~~pd~~~~~~ll~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 285 (713)
|++.... .+.+...|..+...+.+ .|+++ +|..+|+...+.-.+.+...|..++..+.+.|++
T Consensus 261 y~~al~~---~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 261 YEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 7777653 13345667777766665 68876 7888888877632345678888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHH
Q 005127 286 EFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYE 363 (713)
Q Consensus 286 ~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~l~~ 363 (713)
++|..+|+++.+.... + ...|...+..+.+.|+++.|..+|....+.. +.+...|...... +...|+.++|..+|+
T Consensus 338 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 8888888888875322 2 2467777777778888888888888887653 2223333322222 335788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPN--TITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 364 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..++.++.+
T Consensus 416 ~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 416 LGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 776542 3357788888888888888888888888887753 2332 44677777777778888888888877765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=190.16 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 339 IISYSSLMGACSNAKNWQKALELYEHMKS---IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (713)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (713)
..+||+||++||++|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|+++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655542 245566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 416 LVACERKDDV-EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (713)
Q Consensus 416 l~a~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 456 (713)
|.++++.|+. ++|.++|++|.+.|+.||..+|+|+++.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666665553 4555666666666666666666666554433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-13 Score=150.62 Aligned_cols=338 Identities=13% Similarity=0.042 Sum_probs=287.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHh----hHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHh----CCCh
Q 005127 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDS 108 (713)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~ 108 (713)
.+++++|+..|++..+.|. ...+..+...+.. .++.++|+.+|++.. ..+...+..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGY----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 7899999999999998762 3344456666666 788999999998754 4577888888888888 8899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 005127 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAK 180 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 180 (713)
++|+..|+...+.| +...+..|...|.. .++.++|.++|++..+.| +...+..|...|.. .+++++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999998876 67788888888887 789999999999999874 78889999999998 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 005127 181 AFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDR 252 (713)
Q Consensus 181 A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~ 252 (713)
|+.+|++..+.| +...+..+...|.. .+++++|.++|++.... .+...+..+..+|.. .+++++
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-----GNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 999999998876 67788888888876 78999999999998753 345677778888888 899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 005127 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAF 324 (713)
Q Consensus 253 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~a~ 324 (713)
|...|+...+.+ ++..+..+...|... +++++|+..|++..+.| +...+..+...|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998765 467888888888887 89999999999999875 4567777888887766 789999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHH
Q 005127 325 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEV 396 (713)
Q Consensus 325 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l 396 (713)
..|+...+.+ +...+..|..+|.. .+++++|...|++..+.+ +...+..|...|.. .++.++|...
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 67889999999998 899999999999998854 67888889999988 8999999999
Q ss_pred HHHHHHCCC
Q 005127 397 LSDMKSLGL 405 (713)
Q Consensus 397 ~~~m~~~g~ 405 (713)
|++..+.+.
T Consensus 426 ~~~A~~~~~ 434 (490)
T 2xm6_A 426 FDTASTNDM 434 (490)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHCCC
Confidence 999988753
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=192.19 Aligned_cols=161 Identities=12% Similarity=0.206 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQ---EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 168 (713)
..|||++|++|++.|++++|.++|..|. ..|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC------HHHHHHHH
Q 005127 169 IDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALM 241 (713)
Q Consensus 169 i~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd------~~~~~~ll 241 (713)
|+++++.|+ .++|.++|++|.+.|+.||.++|+.++.++.+.+-++.+ .++. .++.|+ ..+...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv~---P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV----HKVK---PTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH----GGGC---CCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH----HHhC---cccCCCCCCcccccchHHHH
Confidence 999999998 578999999999999999999999999877765433333 3332 234433 55666677
Q ss_pred HHHHHcCC---------HHHHHHHHHH
Q 005127 242 KACANAGQ---------VDRAREVYKM 259 (713)
Q Consensus 242 ~~~~~~g~---------~~~A~~~~~~ 259 (713)
+.|.+.+. .++-...|++
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHH
Confidence 78877652 4555566653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-16 Score=163.25 Aligned_cols=261 Identities=13% Similarity=0.067 Sum_probs=132.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 209 (713)
+..+...+.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|+..|+++.+.. +.+..++..+...|..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3344444444444555555444444432 2234444444444555555555555554444432 2234444444455555
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCC-HHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHH
Q 005127 210 SGAVDRAFDVLAEMNAEVHPVDPD-HITIGA---------------LMKACANAGQVDRAREVYKMIHKYNIKG-TPEVY 272 (713)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~---------------ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~ 272 (713)
.|++++|.+.|.++... .|+ ...+.. .+..+...|++++|...|+.+.+..... +..++
T Consensus 145 ~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 145 ESLQRQACEILRDWLRY----TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp TTCHHHHHHHHHHHHHT----STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHHh----CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 55555555555544432 111 111100 1222225666666666666665543211 45666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (713)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 352 (713)
..+...|.+.|++++|+..|+++...... +..++..+...+...|++++|...++.+.+.. +.+..++..+..+|.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 66666666666666666666666554322 45556666666666666666666666655543 33455566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005127 353 KNWQKALELYEHMKSIKLK----------PTVSTMNALITALCDGDQLPKTMEVLS 398 (713)
Q Consensus 353 g~~~~A~~l~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (713)
|++++|...|+++.+.... ....+|..+..+|...|+.++|..+++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 6666666666655432100 014555666666666666666655554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-16 Score=162.56 Aligned_cols=285 Identities=11% Similarity=-0.068 Sum_probs=229.1
Q ss_pred hHHHHHHHH-HhhhCC---C--C--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 005127 74 QKAIKEAFR-FFKLVP---N--P--TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (713)
Q Consensus 74 ~~~~~~A~~-~~~~~~---~--~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 145 (713)
.+++++|+. .|+... + | +...+..+...+.+.|++++|...|+.+.+.. +.+..++..+..+|...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 467888888 777532 1 2 34567888899999999999999999999875 5578899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhc
Q 005127 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA---------------LITACGQS 210 (713)
Q Consensus 146 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~---------------li~~~~~~ 210 (713)
|.+.|+++.+.. +.+..++..+...|...|++++|+..|+++..... .+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 999999998875 44788999999999999999999999999987642 22222221 23344488
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005127 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (713)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 290 (713)
|++++|...|.++.... +-.++..++..+...|.+.|++++|...|+.+.+.. +.+..+|..+...|.+.|++++|+.
T Consensus 195 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998642 112257889999999999999999999999998875 5578899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCHHHHHH
Q 005127 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV----------GIISYSSLMGACSNAKNWQKALE 360 (713)
Q Consensus 291 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----------~~~~~~~li~~~~~~g~~~~A~~ 360 (713)
.|+++.+... .+...+..+..+|.+.|++++|...+..+.+..... ...+|..+..+|.+.|+.++|..
T Consensus 273 ~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999988754 367889999999999999999999999987653111 26899999999999999999998
Q ss_pred HHHH
Q 005127 361 LYEH 364 (713)
Q Consensus 361 l~~~ 364 (713)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-17 Score=167.71 Aligned_cols=283 Identities=13% Similarity=0.152 Sum_probs=133.5
Q ss_pred HhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005127 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (713)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 151 (713)
.+.|++++|.+++++++.|+ +|..+..++.+.|++++|++.|.+ .+|..+|..++..+...|++++|.+.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34567889999999886654 899999999999999999999964 3577789999999999999999999877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 005127 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (713)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 231 (713)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 77664 4567889999999999999999888874 367789999999999999999999999876
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (713)
Q Consensus 232 pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 311 (713)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHH
Confidence 26889999999999999999999988 25789999999999999999996655542 22344456788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 005127 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 383 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~~~~p------~~~~~~~li~~ 383 (713)
..|.+.|.+++|..+++...... +-....|+-|...|++- +++.+..++|.. +.+++| +...|..+...
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887665 55577777777777764 456666666652 122222 34568899999
Q ss_pred HHhCCChhHHHHH
Q 005127 384 LCDGDQLPKTMEV 396 (713)
Q Consensus 384 ~~~~g~~~~A~~l 396 (713)
|.+.++++.|..+
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999998874
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-13 Score=148.45 Aligned_cols=396 Identities=10% Similarity=0.071 Sum_probs=282.1
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 005127 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (713)
Q Consensus 48 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 124 (713)
|++..+.+ |.+...+..++.. .+.|++++|..+|+.+. +.+...|..++..+.+.|++++|..+|+++++. .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55666665 6666666666664 56789999999998753 457789999999999999999999999999976 4
Q ss_pred CCHHHHHHHHHHH-HHcCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHH
Q 005127 125 ADCKLYTTLITTC-AKSGKVDAMFE----VFHEMVNA-GIEP-NVHTYGALIDGCAK---------AGQVAKAFGAYGIM 188 (713)
Q Consensus 125 pd~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~l~~~m 188 (713)
|+...|...+... ...|+++.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6877777777533 45677777665 77776543 5443 56788888877665 78999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHh------hhCC-CCCCCC--------HHHHHHH
Q 005127 189 RSKNVKPDRVVFNALITAC-------------GQSGAVDRAFDVLAEM------NAEV-HPVDPD--------HITIGAL 240 (713)
Q Consensus 189 ~~~g~~pd~~~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~~-~~~~pd--------~~~~~~l 240 (713)
.+....+....|....... .+.+++..|..++.++ .... ..+.|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111123444322211 1245577777777652 1110 012343 2355555
Q ss_pred HHHHHHc----CCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHC
Q 005127 241 MKACANA----GQV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKK 298 (713)
Q Consensus 241 l~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~ 298 (713)
+...... ++. ..+..+|+...... +.++..|..++..+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433222 233 47778898888764 5678999999988876 69987 899999998863
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005127 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (713)
Q Consensus 299 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 377 (713)
-..-+...|..++..+.+.|++++|..+|+.+.+.. +.+ ..+|..++..+.+.|++++|.++|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 222367889999999999999999999999999863 223 3589999999999999999999999998752 1223333
Q ss_pred HHHHH-HHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHH
Q 005127 378 NALIT-ALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIG 452 (713)
Q Consensus 378 ~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~ 452 (713)
..... .+...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|+.+|++....+ ..|+ ...|...+.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 32222 234689999999999998874 45 57888899999999999999999999999863 3443 335555554
Q ss_pred H
Q 005127 453 M 453 (713)
Q Consensus 453 ~ 453 (713)
.
T Consensus 472 ~ 472 (530)
T 2ooe_A 472 F 472 (530)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-14 Score=147.03 Aligned_cols=257 Identities=12% Similarity=0.147 Sum_probs=191.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCCh
Q 005127 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 108 (713)
.........|++..|+..++...... |.+. ..+..+.+.+...|++++|+..++...+|+..++..+...+...++.
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcH
Confidence 34555677899999999887765433 4442 35566677888888889998888776667777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005127 109 EGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 187 (713)
++|++.++.+...+..| +...+..+...+...|++++|++.+++ +.+..++..+...|.+.|++++|...|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 89999888888776544 556667777888888899998888877 35777888888888888888888888888
Q ss_pred HHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005127 188 MRSKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (713)
Q Consensus 188 m~~~g~~pd~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 264 (713)
+.+.. |+.... ..++..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...|++..+.+
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88763 443211 12233344457888888888888764 24567778888888888888888888888877765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCC
Q 005127 265 IKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKGV 300 (713)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~ 300 (713)
+.++.++..++..+...|+.++ +.++++++.+..+
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 5577788888888888888765 5677787776643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-15 Score=157.04 Aligned_cols=228 Identities=14% Similarity=0.055 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 209 (713)
+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++|+..|+++.+.. +.+..+|..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 3333344444444444444444443332 1233344444444444444444444444444331 2233444444444444
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHH
Q 005127 210 SGAVDRAFDVLAEMNAEVHPVDPD-----------HITIGALMKACANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAIN 277 (713)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~pd-----------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~ 277 (713)
.|++++|.+.|+++... .|+ ...+..+...|.+.|++++|..+|+.+.+.... .+..+|..+..
T Consensus 146 ~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQ----NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp TTCHHHHHHHHHHHHHH----CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHh----CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 44444444444444321 111 112222334444444455555555444443211 03444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (713)
Q Consensus 278 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 357 (713)
.|...|++++|+..|++..+.... +..++..+..+|...|++++|...++.+.+.. +.+..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 444444444444444444443221 33344444444444444444444444443332 1223344444444444444444
Q ss_pred HHHHHHHH
Q 005127 358 ALELYEHM 365 (713)
Q Consensus 358 A~~l~~~m 365 (713)
|...|+++
T Consensus 300 A~~~~~~a 307 (365)
T 4eqf_A 300 AVSNFLTA 307 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-15 Score=158.24 Aligned_cols=267 Identities=14% Similarity=0.019 Sum_probs=185.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 005127 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (713)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~l 240 (713)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+...|...|++++|.+.|+++.... +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 34457788888889999999999999888764 4567888888889999999999999998887641 3346788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 005127 241 MKACANAGQVDRAREVYKMIHKYNIK---------GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSAL 310 (713)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~l 310 (713)
..+|...|++++|...|+.+.+.... .....+..+...|...|++++|+..|+++.+.... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 88888899999998888888764310 01223344567777788888888888887776432 256777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 005127 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (713)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 390 (713)
...|...|++++|...++.+.+.. +.+..+++.+..+|.+.|++++|...|+++.+.. +.+..+|..+...|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 777888888888888887777654 3456777777888888888888888887776642 33467777777778888888
Q ss_pred hHHHHHHHHHHHCC---CCC--------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 391 PKTMEVLSDMKSLG---LCP--------NTITYSILLVACERKDDVEVGLMLLS 433 (713)
Q Consensus 391 ~~A~~l~~~m~~~g---~~p--------~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (713)
++|++.|+++.+.. ..| +...|..+..++...|+.+.+..+..
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888877766521 000 24566777777777777777666553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-16 Score=158.87 Aligned_cols=288 Identities=15% Similarity=0.145 Sum_probs=136.5
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChH
Q 005127 31 SYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (713)
Q Consensus 31 ~~~~L~-~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 109 (713)
..+.|+ +.|++++|.+.++++... .....++..+.+.|++++|++.|.+. +|..+|..++.++...|+++
T Consensus 8 a~~~ll~~~~~ld~A~~fae~~~~~-------~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 8 AVQVLIEHIGNLDRAYEFAERCNEP-------AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHhCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHH
Confidence 355566 788899999999999432 24557888899999999999999764 57779999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
+|...++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|...|..+
T Consensus 79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 79 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 999977776664 5567889999999999999999998884 478889999999999999999999999987
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 005127 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (713)
Q Consensus 190 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 269 (713)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|...... +...+
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~a 207 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 207 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCH
Confidence 36999999999999999999999977 2678999999999999999999665543 33445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISV------GIIS 341 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~------~~~~ 341 (713)
.-...++..|.+.|++++|..+++...... .-....|+-+.-+|++- +++.+.++.|.. +.+++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 556679999999999999999999988665 34667777777777653 455555555542 223333 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 005127 342 YSSLMGACSNAKNWQKALEL 361 (713)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~l 361 (713)
|..++-.|.+.++++.|...
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 88999999999999988775
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-14 Score=149.37 Aligned_cols=152 Identities=9% Similarity=0.012 Sum_probs=72.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 323 (713)
+...|++++|...++.+.+.. +.+..++..+...|...|++++|...++++.+.... +..++..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHH
Confidence 444455555555555554443 234455555555555555555555555555443221 344444444555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhCCChhH
Q 005127 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-----------TVSTMNALITALCDGDQLPK 392 (713)
Q Consensus 324 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~ 392 (713)
...++.+.+.. +.+..++..+...|.+.|++++|.+.|++..+..... +...|..+..+|.+.|++++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 55555444432 2234444445555555555555555554443321000 23444444444555555555
Q ss_pred HHHHHH
Q 005127 393 TMEVLS 398 (713)
Q Consensus 393 A~~l~~ 398 (713)
|..+++
T Consensus 305 A~~~~~ 310 (327)
T 3cv0_A 305 VELTYA 310 (327)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 544443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-14 Score=147.31 Aligned_cols=266 Identities=8% Similarity=-0.092 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (713)
...|..+...+...|++++|..+|+.+.+.. +.+..++..+..++...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3455667777888899999999999888764 4577788888899999999999999999988764 3467888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHhhhCCCCCCCCHHH
Q 005127 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL--------------IT-ACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~ 236 (713)
|...|++++|...|+++.... +.+...+..+ .. .+...|++++|.+.+.++.... +.+..+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS---TTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHHH
Confidence 999999999999999988763 2222222222 22 3777889999999999987642 346788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 316 (713)
+..+...|.+.|++++|...++.+.+.. +.+..+|..+...|...|++++|...|+++.+.... +..++..+...|..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 8999999999999999999999998875 557889999999999999999999999999887543 67889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 317 AGKVEAAFEILQEAKNQGISV-----------GIISYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 317 ~g~~~~a~~~~~~m~~~g~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
.|++++|...++.+.+..... +..++..+..+|.+.|+.++|..++++.
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999987764221 4788999999999999999999998654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-12 Score=145.50 Aligned_cols=374 Identities=14% Similarity=0.169 Sum_probs=271.3
Q ss_pred CcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 005127 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (713)
Q Consensus 24 ~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (713)
++..-..+...++..|.+.+|++++++....+- +..+.....+++....+. +......+.....+-+ ..-+...|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 344445555677899999999999999985431 224445555444433332 2233333333322222 34467788
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005127 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (713)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (713)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|+
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999999853 12223344433 6788999999988663 5788999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005127 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (713)
Q Consensus 183 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 262 (713)
+.|.+. -|...|..++.+|.+.|++++|.+.|....+. .++....+.++.+|++.+++++..... +
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~----~~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 999664 37888999999999999999999999876653 344444456899999999988644442 1
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005127 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (713)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 342 (713)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+.+. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 345567778999999999999999999985 37999999999999999999999876 357899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHH--
Q 005127 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVAC-- 419 (713)
Q Consensus 343 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~-- 419 (713)
..+-.+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++.... +.|.. ..|+-+..++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHh
Confidence 999999999999999998776543 5677788999999999999999999987764 34433 3454444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHh
Q 005127 420 ERKDDVEVGLMLLSQAKEDGVIP------NLVMFKCIIGMCSR 456 (713)
Q Consensus 420 ~~~g~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~r 456 (713)
.+.++..++.+.|..-. .+.| +...|.-++-+|.+
T Consensus 1327 y~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~ 1367 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDK 1367 (1630)
T ss_pred CCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHh
Confidence 44556666666664322 3333 34556666666543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-14 Score=142.34 Aligned_cols=248 Identities=13% Similarity=0.106 Sum_probs=131.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 137 CAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (713)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 214 (713)
....|++..|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 33455666666555544322 2221 23344555666666666666544331 2344555555556666666666
Q ss_pred HHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 215 RAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (713)
Q Consensus 215 ~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 293 (713)
+|.+.++++... +..|+ ...+..+..+|...|++++|.+.++. +.+...+..++..|.+.|++++|.+.|+
T Consensus 83 ~A~~~l~~ll~~--~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 83 AIVAELDREMSR--SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHS--CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhc--ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666665442 22232 33344444556666666666666654 3445566666666666666666666666
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005127 294 DMTKKGVIPDEVFL---SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (713)
Q Consensus 294 ~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 370 (713)
++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+..+++.+..+|.+.|++++|...|++..+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 665543 332111 112222233356666666666665552 4455566666666666666666666666655432
Q ss_pred CCCHHHHHHHHHHHHhCCChhH-HHHHHHHHHH
Q 005127 371 KPTVSTMNALITALCDGDQLPK-TMEVLSDMKS 402 (713)
Q Consensus 371 ~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~ 402 (713)
+.+..++..++..+...|+.++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2345556666666666666554 3455555555
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-13 Score=146.29 Aligned_cols=359 Identities=11% Similarity=-0.040 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhC------------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC------
Q 005127 61 KVYHARFFNVCKSQKAIKEAFRFFKLV------------PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG------ 122 (713)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ 122 (713)
..++..++.++...|+.++|++.|++. .+....+|+.+..+|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345555666666677777777776542 12345677777777777777777777776655421
Q ss_pred C-CCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCC
Q 005127 123 L-KADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNAGIEPNVHTYGALIDG---CAKAGQVAKAFGAYGIMRSKNVKPD 196 (713)
Q Consensus 123 ~-~pd~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~pd 196 (713)
. .....++..+..++.+. +++++|.+.|++..+... -+...+..+..+ +...++.++|++.|++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0 11244555555555443 356777777777766532 234444444433 234456667777777666543 334
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 005127 197 RVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (713)
Q Consensus 197 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 272 (713)
..++..+...+.. .++.++|.+.+++.... .+.+..++..+...|.+.|++++|...|+...+.. +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 5555555444443 34566777777766543 13345566677777777777777777777776654 4455666
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 273 TIAINCCSQT-------------------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 273 ~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
..+...|... +.++.|...|++..+.... +..++..+...|...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6555554322 1234455555554443221 2334445555555566666666666555554
Q ss_pred CCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH
Q 005127 334 GISVGII--SYSSLMG-ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (713)
Q Consensus 334 g~~~~~~--~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 410 (713)
...+... .+..+.. .+...|+.++|...|++..+. .|+...+...+ ..+.++++...... +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HHHHHHHHHHHHhC-CCCHH
Confidence 3222111 1122211 123455556666655555543 23322221111 12223333333321 22445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 411 TYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
+|..+..++...|++++|++.|++.++.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5666666666666666666666666553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-11 Score=142.24 Aligned_cols=313 Identities=12% Similarity=0.144 Sum_probs=236.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHH
Q 005127 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 111 (713)
...++..|++++|..+|++... .. .. +..+....+++++|.++.+++. +..+|..+..++...|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~----~~-~A----~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV----NT-SA----VQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC----HH-HH----HHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 3456689999999999988631 11 11 1112336678999999988774 466788999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 112 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
...|.+. .|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++. +-| .+
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleel-e~f---I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL-EEF---IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHH-HHH---Hh-
Confidence 9998553 467788889999999999999999998877654 4444444588899999888853 333 21
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 005127 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (713)
Q Consensus 192 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 271 (713)
.++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 346677778888999999999999999864 27888999999999999999999876 34588
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 999999999999988888766542 2355677789999999999999999998776554 3445567666666665
Q ss_pred c--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhCCChhHHHH
Q 005127 352 A--KNWQKALELYEHMKSIKLKP------TVSTMNALITALCDGDQLPKTME 395 (713)
Q Consensus 352 ~--g~~~~A~~l~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~ 395 (713)
. +++.++.++|..-.. ++| +...|.-++..|.+.|+++.|..
T Consensus 1327 y~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred CCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4 556677777764332 222 46679999999999999999984
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.4e-13 Score=143.16 Aligned_cols=365 Identities=11% Similarity=-0.018 Sum_probs=239.9
Q ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHHc-------CCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC-------C--
Q 005127 29 LHSYNRLI----RQGRISECIDLLEDMERK-------GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV-------P-- 88 (713)
Q Consensus 29 ~~~~~~L~----~~g~~~~A~~l~~~m~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~-- 88 (713)
...||.|. ..|++++|++.|++..+. ...|.....+..++.++...|++++|...|++. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 44566544 789999999999987642 112444556667888888899999999888753 1
Q ss_pred --CCCHHHHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCChhHHHHHHHHHHHCCCCCC
Q 005127 89 --NPTLSTFNMLMSVCAS--SKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEMVNAGIEPN 161 (713)
Q Consensus 89 --~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (713)
.....+++.+..++.. .+++++|...|++..+.. +-+...+..+..+ +...++.++|++.|++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1235566666555554 457999999999998874 3355556555554 445678889999999988764 335
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHH
Q 005127 162 VHTYGALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (713)
Q Consensus 162 ~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~ 237 (713)
..++..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|.+.|.+..... +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHHHH
Confidence 6667666655554 467789999999987764 5567889999999999999999999999987641 2345566
Q ss_pred HHHHHHHHHc-------------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 238 GALMKACANA-------------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 238 ~~ll~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
..+...|... +..+.|...|+...+.+ +.+..++..+...|...|++++|+..|++....
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6665555332 23567778888777655 445567888999999999999999999999887
Q ss_pred CCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005127 299 GVIPDEV--FLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375 (713)
Q Consensus 299 g~~p~~~--t~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 375 (713)
...|... .+..+.. ...+.|+.++|+..|.+..+.. |+..... +....+.++++...+.. +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHH
Confidence 5543221 1222222 2346899999999999988864 3332221 22344455555554432 45678
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHH
Q 005127 376 TMNALITALCDGDQLPKTMEVLSDMKSLG-LCPNTITY 412 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~ 412 (713)
+|+.|...|...|++++|++.|++.++.| ..|+..++
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999999988754 34554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-12 Score=127.50 Aligned_cols=90 Identities=12% Similarity=-0.007 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 005127 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (713)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 388 (713)
.+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|+...+.. +.+...|..+...|...|
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444333322 1223334444444444444444444444443321 122334444444444444
Q ss_pred ChhHHHHHHHHH
Q 005127 389 QLPKTMEVLSDM 400 (713)
Q Consensus 389 ~~~~A~~l~~~m 400 (713)
++++|.+.|++.
T Consensus 222 ~~~~A~~~~~~a 233 (258)
T 3uq3_A 222 EYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-12 Score=126.02 Aligned_cols=222 Identities=13% Similarity=0.088 Sum_probs=108.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 005127 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPD----RVVFNAL 203 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd----~~~~~~l 203 (713)
+..+...+...|++++|...|++..+.. .+..+|..+..+|...|++++|+..|++..+... .++ ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 3334444444444444444444444444433210 011 2344444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 005127 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (713)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 283 (713)
...+...|++++|.+.|.+.... .|+. ..+.+.|++++|...++.+.... +.+...|..+...+...|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE----HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhc----Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 44444445555555444444432 2221 22344445555555555554432 223345555555555666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 363 (713)
++++|...|++..+.... +..++..+..+|...|++++|...+....+.. +.+..++..+...|.+.|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666655554332 45555556666666666666666666655543 3345566666666666666666666666
Q ss_pred HHHh
Q 005127 364 HMKS 367 (713)
Q Consensus 364 ~m~~ 367 (713)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-12 Score=139.48 Aligned_cols=346 Identities=11% Similarity=0.016 Sum_probs=190.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHH---HHHHHHhhhCCCCCHHHHHHHHHHHH
Q 005127 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCA 103 (713)
Q Consensus 27 ~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~ 103 (713)
|+...-+.+.+.|++++|+++|++..+.|.. ... ..+...+...|.. ++|+.+|+.....+...+..+...+.
T Consensus 5 p~~~la~~~~~~g~~~~A~~~~~~aa~~g~~-~A~---~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 5 PDQRLANEALKRGDTVTAQQNYQQLAELGYS-EAQ---VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLA 80 (452)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-TGG---GTCC----------------------------CHHHHHHHHH
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHCCCH-HHH---HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456667778999999999999999887732 211 1223333445555 88999988766556667777777555
Q ss_pred hCC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005127 104 SSK-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (713)
Q Consensus 104 ~~g-----~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (713)
..+ ++++|+..|++..+.|.. + .+..|...|...+..+ .+.+.+......| +...+..|...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 678888888888887633 2 5666777776655433 3444555544443 344566666677766
Q ss_pred CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc-
Q 005127 176 GQV----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA- 247 (713)
Q Consensus 176 g~~----~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~- 247 (713)
+.+ +.+..++...... +...+..|...|...| +.++|++.|.+....+ .++...+..|..+|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGG
T ss_pred CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCC
Confidence 643 3444444433322 2236666777777777 7777777777766542 34444445555556444
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 005127 248 ---GQVDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--- 318 (713)
Q Consensus 248 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--- 318 (713)
+++++|...|+... .+ ++..+..+... | ...+++++|+..|++..+.| +...+..+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 57777777777766 32 34556555555 3 45677777777777776665 4455555555555 34
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CC
Q 005127 319 --KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GD 388 (713)
Q Consensus 319 --~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g 388 (713)
++++|...|.... .| +...+..|..+|.. ..++++|...|+...+.| +......|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCC
Confidence 6777777766655 32 45556666666655 236666777666666544 22233444444442 23
Q ss_pred ChhHHHHHHHHHHHCC
Q 005127 389 QLPKTMEVLSDMKSLG 404 (713)
Q Consensus 389 ~~~~A~~l~~~m~~~g 404 (713)
+.++|...|+...+.|
T Consensus 373 d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCC
Confidence 5556666655555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-12 Score=122.00 Aligned_cols=57 Identities=16% Similarity=-0.042 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
+..+..++...|++++|+..|++..+.. .+...+..+..+|...|++++|...|++.
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 177 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKA 177 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333444444444443333333 23333333333344444444444444333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.2e-12 Score=121.18 Aligned_cols=198 Identities=13% Similarity=-0.037 Sum_probs=141.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (713)
Q Consensus 232 pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 311 (713)
++...+..+...+.+.|++++|...|+...+.+ +.+...|..+...+.+.|++++|+..|++..+.... +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 344556666666677777777777777666654 455666777777777777777777777776665433 556666666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005127 312 DFAGHA-----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (713)
Q Consensus 312 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 380 (713)
.++... |++++|...++...+.. +-+...+..+...|...|++++|...|++..+.. .+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 677777 99999999999988864 3467888999999999999999999999998876 788899999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 381 ITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
...|...|++++|+..|++..+. .| +...+..+..++...|++++|+..|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999998874 45 66778888899999999999999887654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-11 Score=119.31 Aligned_cols=164 Identities=10% Similarity=-0.014 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFA 314 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~ 314 (713)
++..+...|...|++++|...|+.+.+.. +.+..++..+...|...|++++|.+.|+++...+..| +...+..+...+
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence 33333334444444444444444333332 2233344444444444444444444444443311122 223333333444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 005127 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (713)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 394 (713)
...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+.+.+.. +.+...+..+...|...|+.++|.
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHH
Confidence 44444444444444443332 1223444444444444444444444444444321 223334444444444444444444
Q ss_pred HHHHHHHH
Q 005127 395 EVLSDMKS 402 (713)
Q Consensus 395 ~l~~~m~~ 402 (713)
+.++++.+
T Consensus 230 ~~~~~~~~ 237 (252)
T 2ho1_A 230 SYGLQLKR 237 (252)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-11 Score=117.41 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (713)
...|..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666667777777777777777766653 3456666667777777777777777777766653 2255666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCH
Q 005127 172 CAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~ 250 (713)
|...|++++|..+|+++...+..| +...+..+...+...|++++|.+.|.+..... +.+..++..+...|...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCH
Confidence 777777777777777666522233 34455566666666666666666666655421 22345556666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 251 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
++|...|+.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666665543 344555666666666666666666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.9e-11 Score=114.25 Aligned_cols=164 Identities=9% Similarity=-0.070 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDMTKKGVIPD-EVFLSALIDF 313 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~ 313 (713)
++..+...|...|++++|...|+.+.+.. +.+..++..+...|... |++++|...|+++.+.+..|+ ...+..+..+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 33333344444444444444444333322 22333444444444444 444444444444443111111 2333344444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 005127 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 393 (713)
+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+.....+...+..+...+...|+.++|
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 444444444444444443332 1223444444444444444444444444443321002333444444444444444444
Q ss_pred HHHHHHHH
Q 005127 394 MEVLSDMK 401 (713)
Q Consensus 394 ~~l~~~m~ 401 (713)
...++.+.
T Consensus 202 ~~~~~~~~ 209 (225)
T 2vq2_A 202 YEYEAQLQ 209 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-11 Score=113.55 Aligned_cols=94 Identities=7% Similarity=-0.068 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (713)
.|..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 33344444444444444444444443332 2223334444444444444444444444433322 113333333333344
Q ss_pred Hc-CCHHHHHHHHHHHH
Q 005127 174 KA-GQVAKAFGAYGIMR 189 (713)
Q Consensus 174 ~~-g~~~~A~~l~~~m~ 189 (713)
.. |++++|...|+++.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKAL 104 (225)
T ss_dssp TTTCCHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 44 44444444444333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-10 Score=112.34 Aligned_cols=220 Identities=11% Similarity=-0.004 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 005127 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (713)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~ 238 (713)
.++..+...|...|++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|.+.... .+..++.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----NYSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----CCHHHHH
Confidence 334444444444444444444444444321 23334444444444 44444444444444332 1333444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 239 ALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (713)
Q Consensus 239 ~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 310 (713)
.+...|.. .+++++|...|+...+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 44444444 444444444444444432 33444444444444 445555555555444433 23334444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005127 311 IDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (713)
Q Consensus 311 i~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 382 (713)
...|.. .+++++|...++...+.+ +...+..+..+|.+ .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444 445555555555444432 23444444445555 555555555555544432 2344444444
Q ss_pred HHHh----CCChhHHHHHHHHHHH
Q 005127 383 ALCD----GDQLPKTMEVLSDMKS 402 (713)
Q Consensus 383 ~~~~----~g~~~~A~~l~~~m~~ 402 (713)
.|.+ .+++++|++.|++..+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 4544 4555555555555444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=123.83 Aligned_cols=245 Identities=11% Similarity=-0.061 Sum_probs=115.1
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005127 176 GQVAKAFGAYGIMRSKNVK---PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (713)
Q Consensus 176 g~~~~A~~l~~~m~~~g~~---pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~ 252 (713)
|++++|+..|+++.+.... .+..+|..+...+...|++++|.+.|.+.... .+.+..++..+...|...|++++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHccCHHH
Confidence 4455555555555443210 12334444455555555555555555554432 12234455555555555555555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 253 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
|...|+...+.. +.+..+|..+...|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 555555555443 2234555555555555666666666665555532 2222223333333445566666666655444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005127 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK---PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (713)
Q Consensus 333 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (713)
.. +++...+ .++..+...++.++|...++...+.... .+...|..+...|...|++++|+..|++..+. .|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 32 2222222 2444455555556666666555432100 01345555666666666666666666666553 3422
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 005127 410 ITYSILLVACERKDDVEVGLMLL 432 (713)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~ 432 (713)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 111233444455555554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-10 Score=112.48 Aligned_cols=224 Identities=11% Similarity=-0.023 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHH
Q 005127 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEV 271 (713)
Q Consensus 196 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 271 (713)
+..++..+...|...|++++|.+.|.+... ..+..++..+...|.. .+++++|...|++..+.+ ++.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 567788888999999999999999999876 2345678888899999 999999999999998876 6789
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005127 272 YTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYS 343 (713)
Q Consensus 272 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 343 (713)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 9999999999 999999999999999875 67888889999999 999999999999999876 577888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 344 SLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (713)
Q Consensus 344 ~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (713)
.+...|.. .+++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ | ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHH
Confidence 88889988 99999999999999875 367888889999999 999999999999998864 2 6677778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCC
Q 005127 416 LVACER----KDDVEVGLMLLSQAKEDG 439 (713)
Q Consensus 416 l~a~~~----~g~~~~a~~~~~~m~~~g 439 (713)
...+.+ .+++++|...|++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 999999999999998865
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-11 Score=120.87 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
..+...|...|++++|...|+...+.. +.+..+|..+...|...|++++|+..|++..
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 333344444444444444444433332 2223334444444444444444444444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-12 Score=126.32 Aligned_cols=224 Identities=11% Similarity=-0.045 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (713)
..+|..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|.+.|++..+.. +.+..++..+...
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 3455666666666777777777777666653 3356666667777777777777777777766653 2245666666677
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 005127 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~ 251 (713)
|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+.+.... .+++...+ .++..+...++.+
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~ 194 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGW-NIVEFYLGNISEQ 194 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHH-HHHHHHTTSSCHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCcchHHH-HHHHHHHHhcCHH
Confidence 77777777777777766654 233333333444445556677777776555442 12222232 2455555666666
Q ss_pred HHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 252 RAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (713)
Q Consensus 252 ~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 327 (713)
+|...+....+.... .+..+|..+...|.+.|++++|...|++....... +. .....++...|++++|++.+
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 666666655443211 01345566666666666666666666666654321 21 12233444455555554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-11 Score=120.30 Aligned_cols=203 Identities=13% Similarity=0.058 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (713)
.....|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345566667777777888888888888877653 4467777777788888888888888888877664 33667777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005127 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~ 249 (713)
..|...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..+...|.+.|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCC
Confidence 78888888888888888777653 345667777777777778888888877776653 12345666777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 250 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 299 (713)
+++|...|+.+.+.. +.+..++..+...|.+.|++++|...|+++.+..
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777777776654 3456677777777777777777777777776654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.9e-11 Score=118.28 Aligned_cols=231 Identities=10% Similarity=-0.058 Sum_probs=115.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 005127 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQ 209 (713)
Q Consensus 132 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~ 209 (713)
.....+...|++++|.+.|++..+... .+..++..+...|...|++++|+..|++.......|+ ..+|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 344445555555555555555554421 1233455555555555555555555555554221111 2235555555555
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (713)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (713)
.|++++|.+.|++..... +.+..++..+...|...|++++|...|+...+.. +.+..+|..+...+...+++++|.
T Consensus 87 ~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 556666655555554421 2233455555566666666666666665555542 334455555552222333666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 005127 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQG-ISVG------IISYSSLMGACSNAKNWQKAL 359 (713)
Q Consensus 290 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~~~------~~~~~~li~~~~~~g~~~~A~ 359 (713)
..|++..+.... +...+..+..++...|+ .++|...++++.+.. -.|+ ..+|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666554322 34444555555555555 445555555444321 0111 134555555555666666666
Q ss_pred HHHHHHHhC
Q 005127 360 ELYEHMKSI 368 (713)
Q Consensus 360 ~l~~~m~~~ 368 (713)
+.|++..+.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666655543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=9.6e-11 Score=122.61 Aligned_cols=230 Identities=10% Similarity=0.064 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
...|+.+...+...|++++|+..++.+++.. +-+..+|+.+..++...|+ +++|++.|++..+.. +-+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777777778888888888888887764 4456777778888888886 888888888877764 236777777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH-cCC
Q 005127 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQ 249 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~-~g~ 249 (713)
++.+.|++++|+..|+++.... +-+...|..+..++.+.|++++|++.|+++.... +.+...|+.+..++.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCc
Confidence 8888888888888888877653 4466777777777777788888888877776531 2345667777777777 455
Q ss_pred HHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 005127 250 VDRA-----REVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---- 318 (713)
Q Consensus 250 ~~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g---- 318 (713)
.++| ...|+...+.+ +.+...|+.+...+.+.| ++++|++.+.++ +.. ..+...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccc
Confidence 4555 36666666554 445566666666666666 466666666665 222 224455566666665543
Q ss_pred -----CHHHHHHHHHHH
Q 005127 319 -----KVEAAFEILQEA 330 (713)
Q Consensus 319 -----~~~~a~~~~~~m 330 (713)
..++|.++++.+
T Consensus 328 ~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 328 DNKEDILNKALELCEIL 344 (382)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 235566666665
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-11 Score=119.02 Aligned_cols=94 Identities=12% Similarity=0.028 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|..
T Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 128 FYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAY 205 (243)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3333333444444444444444433322 1233344444444444455555555544444321 2234445555555555
Q ss_pred CCChhHHHHHHHHHHH
Q 005127 387 GDQLPKTMEVLSDMKS 402 (713)
Q Consensus 387 ~g~~~~A~~l~~~m~~ 402 (713)
.|++++|++.|+++.+
T Consensus 206 ~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 206 KENREKALEMLDKAID 221 (243)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHc
Confidence 5555555555555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=9.5e-11 Score=122.66 Aligned_cols=248 Identities=11% Similarity=0.031 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005127 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (713)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~li~ 205 (713)
..+|..+...+.+.|++++|++.|++.++.. +-+..+|+.+..++...|+ +++|+..|++..... +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567788888889999999999999998875 3367889999999999996 999999999998764 446788999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCC
Q 005127 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-TGD 284 (713)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~ 284 (713)
++...|++++|+..|+++.... +.+..+|..+..++.+.|++++|...|+.+.+.+ +.+...|+.+..+|.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999988641 3457788888889999999999999999998876 5578888888888888 666
Q ss_pred HHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 005127 285 WEFA-----CSVYDDMTKKGVIPDEVFLSALIDFAGHAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---- 353 (713)
Q Consensus 285 ~~~A-----~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---- 353 (713)
.++| +..|++....... +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 4778777776544 5667777777777777 577888877776 32 3445677778888887764
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCC-HHHHHHHHHHHH
Q 005127 354 -----NWQKALELYEHM-KSIKLKPT-VSTMNALITALC 385 (713)
Q Consensus 354 -----~~~~A~~l~~~m-~~~~~~p~-~~~~~~li~~~~ 385 (713)
.+++|.++|+++ .+. .|. ...|..+...+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 257788888887 443 333 345655555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-11 Score=127.95 Aligned_cols=342 Identities=11% Similarity=-0.013 Sum_probs=232.3
Q ss_pred HHHHHHhhHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 005127 67 FFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141 (713)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g- 141 (713)
+.....+.|++++|+++|+... ..+..++..+...+...|+. ++|+..|++..+. +...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 4556677899999999998753 23444555566666777877 8999999988854 5556666776555555
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--
Q 005127 142 ----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV---AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-- 212 (713)
Q Consensus 142 ----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~-- 212 (713)
++++|.++|++..+.|.. + .+..|...|...+.. .++.+.+......| +...+..|...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 778999999999987633 3 677777777776543 34555666655555 34556667777777774
Q ss_pred --HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----C
Q 005127 213 --VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 283 (713)
Q Consensus 213 --~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g 283 (713)
.+.+..++..... ..|+ .+..|..+|.+.| +.++|...|+...+.+ .++...+..+...|... +
T Consensus 159 ~~~~~a~~~~~~a~~----~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALN----TTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTT----TCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHc----CCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 4455555555432 2344 8888889999999 9999999999999988 55666667777777665 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CH
Q 005127 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 355 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~ 355 (713)
++++|+..|++.. .| +...+..+... + ...++.++|...|.+..+.| +...+..|..+|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 43 44556666665 3 46899999999999999887 6778888888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 005127 356 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEV 427 (713)
Q Consensus 356 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 427 (713)
++|...|++.. .-+...+..|...|.. ..++++|++.|++..+.|. |+. ...|-..|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A--~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSA--DFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTH--HHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHH--HHHHHHHHHhCCCCCCCHHH
Confidence 99999999877 4577788888877776 3489999999999988764 333 3344444443 468999
Q ss_pred HHHHHHHHHHCCC
Q 005127 428 GLMLLSQAKEDGV 440 (713)
Q Consensus 428 a~~~~~~m~~~g~ 440 (713)
|..+|+...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999998874
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-08 Score=114.39 Aligned_cols=416 Identities=8% Similarity=0.017 Sum_probs=268.6
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHH---HHHHHHHhhhCC-----CCCHHHH
Q 005127 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP-----NPTLSTF 95 (713)
Q Consensus 28 ~~~~~~~L~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~-----~~~~~~~ 95 (713)
+..+|..|+ +.+.++.|..+|+.+...- |....+....+..-.+.+. ++.+..+|+... +|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455565555 5789999999999999874 6666666666666677788 999999998643 2888889
Q ss_pred HHHHHHHHhCCCh--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHH---------HcCChhHHHHHHHHHHH
Q 005127 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KAD-CKLYTTLITTCA---------KSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 96 ~~li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~pd-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 155 (713)
...+....+.++. +...++|+..+. .|. .++ ...|...+.... ..++++.+.++|+....
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888766655543 334467776554 465 453 567777776543 23457788899998885
Q ss_pred CCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHh--CCC----C-----------C-----C---H
Q 005127 156 AGIEPNVHTYGALIDGCAK-------------AGQVAKAFGAYGIMRS--KNV----K-----------P-----D---R 197 (713)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~l~~~m~~--~g~----~-----------p-----d---~ 197 (713)
.....-..+|......-.. ..+++.|...+.++.. .++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 4222223344322211111 1233445555554321 111 1 1 0 1
Q ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCCH
Q 005127 198 VVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR-EVYKMIHKYNIKGTP 269 (713)
Q Consensus 198 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~-~~~~~m~~~~~~~~~ 269 (713)
..|...+.---..+ ..+.+..+|++.... ++-+...|...+..+...|+.++|. .+|+..... ++.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 33444444332222 123456678777653 2335667777777788888888886 999888764 35677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---------IPD------------EVFLSALIDFAGHAGKVEAAFEILQ 328 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~------------~~t~~~li~~~~~~g~~~~a~~~~~ 328 (713)
..|-..+...-+.|+++.|..+|+.+..... .|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7788888888889999999999998875310 132 2357777777778888999999999
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 005127 329 EAKNQ-GISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (713)
Q Consensus 329 ~m~~~-g~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 406 (713)
...+. + .....+|...+..-.++ ++.+.|.++|+...+. ++.+...|...+......|+.+.|..+|++.......
T Consensus 459 ~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 98876 2 12233343333333444 4589999999988765 3446677788888888889999999999988875322
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 407 P--NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (713)
Q Consensus 407 p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 453 (713)
+ ....|...+.--...|+.+.+..+.+++.+. .|+......+++-
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~r 583 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNK 583 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHH
Confidence 2 2456777788888889999999999988874 3443333444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-11 Score=125.95 Aligned_cols=304 Identities=14% Similarity=0.013 Sum_probs=152.8
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP- 160 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~- 160 (713)
.....+......+...|++++|...|+.+.+.. +.+ ..++..+...|...|++++|...|++.... +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344555566666777777777777777777653 223 245666777777777777777777765432 1111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHH
Q 005127 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDR 215 (713)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~~~~li~~~~~~g~--------------------~~~ 215 (713)
...++..+...|...|++++|+..|++...... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 234566666777777777777777766653210 011 2345555566666666 555
Q ss_pred HHHHHHHhhhCCC--CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 216 AFDVLAEMNAEVH--PVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (713)
Q Consensus 216 A~~~~~~m~~~~~--~~~p-d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 292 (713)
|.+.+.+...... +..+ ...++..+...|...|++++|...|+...+...
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------------------- 218 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--------------------------- 218 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH---------------------------
Confidence 5555544322100 0000 122334444444444555555444444332100
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 293 DDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 293 ~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
..+..+ ...++..+...|...|++++|...+.+..+. +..+ ...++..+...|.+.|++++|...|++..
T Consensus 219 ----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 219 ----EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp ----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 000000 0123444445555555555555555544322 1000 13455556666666666666666665554
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 005127 367 SIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDV 425 (713)
Q Consensus 367 ~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~ 425 (713)
+..- .++ ..++..+...|...|++++|++.|++..+. +..+ ...++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 3100 011 345556666666666666666666664431 2111 133455555555555554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.1e-11 Score=124.62 Aligned_cols=282 Identities=15% Similarity=0.036 Sum_probs=178.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC
Q 005127 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP 195 (713)
Q Consensus 124 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p 195 (713)
......+......+...|++++|...|++..+.... + ..+|..+...|...|++++|...|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 344556666677777778888888888877766322 3 245667777777777877777777765432 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 005127 196 -DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (713)
Q Consensus 196 -d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 274 (713)
...++..+...|...|++++|...+.+....... .++. .....++..
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~-------------------------------~~~~~~~~~ 132 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDK-------------------------------VGEARALYN 132 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccc-------------------------------cchHHHHHH
Confidence 1334555566666666666666666655431000 0010 000123444
Q ss_pred HHHHHHhcCC--------------------HHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 275 AINCCSQTGD--------------------WEFACSVYDDMTK----KGVIP-DEVFLSALIDFAGHAGKVEAAFEILQE 329 (713)
Q Consensus 275 li~~~~~~g~--------------------~~~A~~l~~~m~~----~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~ 329 (713)
+...|...|+ +++|...+.+... .+..| ...++..+...|...|++++|...+.+
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444 5555555544322 11111 134566677777778888888887777
Q ss_pred HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChhHHHHHHHH
Q 005127 330 AKNQ----GIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSD 399 (713)
Q Consensus 330 m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (713)
..+. +.. ....++..+...|...|++++|...|++..+... .++ ..++..+...|...|++++|++.|++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 6543 111 1134788899999999999999999998764210 112 56788899999999999999999998
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 400 MKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 400 m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
..+. +-.+ ...++..+..++...|++++|...+++..+.
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7652 1111 1457778889999999999999999987753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6.2e-10 Score=103.74 Aligned_cols=165 Identities=16% Similarity=0.050 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
..+|..+...|.+.|++++|...|++..+.+ +.+..+|..+...|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3445555555555555555555555555443 334455555555555555555555555555444332 33444444445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 005127 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 393 (713)
+...++++.|...+....+.. +.+..++..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555544432 2334445555555555555555555555554432 22344555555555555555555
Q ss_pred HHHHHHHHH
Q 005127 394 MEVLSDMKS 402 (713)
Q Consensus 394 ~~l~~~m~~ 402 (713)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-10 Score=124.01 Aligned_cols=277 Identities=15% Similarity=0.021 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----N-VKPDRVV 199 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~pd~~~ 199 (713)
.+..+...+...|++++|...|+++.+.... +. .+|..+...|...|++++|+..|++.... + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445555666677777777777776665321 22 35666666666677777777776666542 0 0111233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005127 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (713)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 279 (713)
+..+...|...|++++|...+.+........ . +.+....++..+...|
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~-------------------------------~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQL-G-------------------------------DRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-T-------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-h-------------------------------chHHHHHHHHHHHHHH
Confidence 4444455555555555555555443210000 0 0011123445555555
Q ss_pred HhcCC-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 005127 280 SQTGD-----------------WEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-- 335 (713)
Q Consensus 280 ~~~g~-----------------~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-- 335 (713)
...|+ +++|+..+++..+. +..+ ...++..+...|...|++++|...+.+..+...
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 55555555554321 1111 123566666677777777777777776654310
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----
Q 005127 336 ---SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KP----TVSTMNALITALCDGDQLPKTMEVLSDMKSL---- 403 (713)
Q Consensus 336 ---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 403 (713)
.....++..+...|...|++++|...|++..+... .. ...++..+...|...|++++|++.|++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01123677888888899999999988887764210 01 1467788888999999999999999887652
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 404 GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 404 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
+-.+ ...++..+..++...|++++|...|++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 1346777888999999999999999988763
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.2e-09 Score=106.53 Aligned_cols=217 Identities=9% Similarity=0.106 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005127 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKV-------DAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 109 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
++|..+|++.++.. +.+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666542 4455566666655542 3554 6666666666652112244566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH-HcCCHH
Q 005127 175 AGQVAKAFGAYGIMRSKNVKPD-RV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQVD 251 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~g~~pd-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~-~~g~~~ 251 (713)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|.++|++..... +++...|........ ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCHH
Confidence 66666666666666653 232 22 55556666666666666666666655421 112222222222211 135555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIP--DEVFLSALIDFAGHAGKVEAAFEILQ 328 (713)
Q Consensus 252 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~li~~~~~~g~~~~a~~~~~ 328 (713)
+|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++.
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555444432 2234445555555555555555555555544431 122 23344444444444444444444444
Q ss_pred HHHH
Q 005127 329 EAKN 332 (713)
Q Consensus 329 ~m~~ 332 (713)
++.+
T Consensus 266 ~a~~ 269 (308)
T 2ond_A 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.7e-11 Score=125.85 Aligned_cols=277 Identities=14% Similarity=0.059 Sum_probs=162.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHT 164 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~ 164 (713)
.+..+...+...|++++|...|+.+.+.. +.+. .++..+...|...|++++|.+.|++..+. +. .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 44456677888999999999999998874 2233 47888889999999999999999887653 11 223467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 005127 165 YGALIDGCAKAGQVAKAFGAYGIMRSK----N-VKPDRVVFNALITACGQSGA-----------------VDRAFDVLAE 222 (713)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~pd~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 222 (713)
+..+...|...|++++|...|++.... + ......++..+...|...|+ +++|.+.+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888889999999999999999887643 1 11123466677777888888 7777776665
Q ss_pred hhhCCC--CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 223 MNAEVH--PV-DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDD 294 (713)
Q Consensus 223 m~~~~~--~~-~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (713)
...... +. .....++..+...|...|++++|...|++..+.... .+ ..++..+...|...|++++|...|++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 432100 00 011234455555566666666666665554332100 00 12344444445555555555555544
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 005127 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSI----K 369 (713)
Q Consensus 295 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~ 369 (713)
...... +.+. .....++..+...|...|++++|...|++..+. +
T Consensus 289 al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 289 TLALAV-------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 332100 0000 011334555555556666666666655554431 0
Q ss_pred C-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 370 L-KPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 370 ~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
. .....++..+...|...|++++|.+.|++..+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0 00123555666666666777777666666654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.9e-11 Score=120.05 Aligned_cols=62 Identities=8% Similarity=-0.084 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 376 TMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
++..+...|...|++++|.+.+++..+. +-.+ ...++..+..++...|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4444555555555555555555554321 1000 122444555556666666666666655554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-09 Score=107.46 Aligned_cols=164 Identities=9% Similarity=0.044 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 314 (713)
.|..++..+.+.|++++|..+|+...+.. +.+.. +|..++..+.+.|++++|..+|++..+.... +...|.......
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~ 178 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34444444444444444444444444422 11122 4555555555555555555555555443321 222232222221
Q ss_pred H-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhCCCh
Q 005127 315 G-HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKP--TVSTMNALITALCDGDQL 390 (713)
Q Consensus 315 ~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~ 390 (713)
. ..|+.++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 1 2466666666666665542 2345666666666666666666666666666542 233 345666666666666777
Q ss_pred hHHHHHHHHHHH
Q 005127 391 PKTMEVLSDMKS 402 (713)
Q Consensus 391 ~~A~~l~~~m~~ 402 (713)
++|..+++++.+
T Consensus 258 ~~a~~~~~~a~~ 269 (308)
T 2ond_A 258 ASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776666665
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-10 Score=117.38 Aligned_cols=276 Identities=15% Similarity=0.055 Sum_probs=146.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCC-CCHHHH
Q 005127 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIE-PNVHTY 165 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~ 165 (713)
+......+...|++++|...|+.+.+.. +.+ ..++..+...|...|++++|.+.+++..+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444556777788888888888877763 223 356777777888888888888887775432 111 124466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 005127 166 GALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRAFDVL 220 (713)
Q Consensus 166 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 220 (713)
..+...|...|++++|...|.+...... .++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777777888888888887777653210 112 2355566666666666 66666665
Q ss_pred HHhhhCCC--CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 221 AEMNAEVH--PV-DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 221 ~~m~~~~~--~~-~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
.+...... +. .....++..+...|...|++++|...++...+... .
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------------------------------~ 215 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-------------------------------E 215 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------------------------------H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------------------------h
Confidence 54432100 00 00122344444555555555555555544432100 0
Q ss_pred CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 005127 298 KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI--- 368 (713)
Q Consensus 298 ~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 368 (713)
.+. .....++..+...+...|++++|...+....+. +.. ....++..+...|...|++++|...+++..+.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 000 001123444444444555555555544444322 100 01344555566666666666666666555431
Q ss_pred -CCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 369 -KLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 369 -~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
+-. ....++..+...|...|++++|.+.|++..+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 000 0133555666666677777777777766654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-09 Score=100.79 Aligned_cols=171 Identities=17% Similarity=0.078 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (713)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 347 (713)
++.+|..+...|.+.|++++|+..|++..+.... +...+..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5688999999999999999999999999987654 78889999999999999999999999988775 446778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 005127 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVE 426 (713)
Q Consensus 348 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 426 (713)
.+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+. .| +..+|..+..++.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHH
Confidence 9999999999999999987653 456888999999999999999999999999875 45 6788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 005127 427 VGLMLLSQAKEDGVIPNLV 445 (713)
Q Consensus 427 ~a~~~~~~m~~~g~~p~~~ 445 (713)
+|...|++.++ +.|+..
T Consensus 159 ~A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHHh--CCccCH
Confidence 99999999987 456543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.3e-10 Score=117.23 Aligned_cols=163 Identities=9% Similarity=-0.054 Sum_probs=84.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----CCHHHHH
Q 005127 168 LIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----PDHITIG 238 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----pd~~~~~ 238 (713)
....+...|++++|+..|++.... +-.+ ...++..+...|...|++++|...+.+......... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777888888887777653 1111 234566677777777777777777766543211110 1123455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 005127 239 ALMKACANAGQVDRAREVYKMIHKYNIK-G----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV-IPDEVFLS 308 (713)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~ 308 (713)
.+...|...|++++|...|+...+.... + ...++..+...|...|++++|+..|++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5556666666666666666554432100 0 1124455555555555555555555554431 11 11233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 005127 309 ALIDFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m 330 (713)
.+...|.+.|++++|...+++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4444555555555555555443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.9e-10 Score=116.10 Aligned_cols=232 Identities=9% Similarity=-0.061 Sum_probs=173.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C----CCCHHHHH
Q 005127 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYN--I----KGTPEVYT 273 (713)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p---d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~----~~~~~~~~ 273 (713)
....+...|++++|...|.+.......... ...++..+...|...|+++.|...+.+..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455678899999999999998653111221 24578888899999999999999998776531 1 11235788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 005127 274 IAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYS 343 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~ 343 (713)
.+...|...|++++|+..|++..+.... ++ ..++..+...|...|++++|...+.+..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999987643111 12 246788888999999999999999988762 33 44467889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005127 344 SLMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSIL 415 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~l 415 (713)
.+...|.+.|++++|...|++..+. +-+.....++.+...|...|+ .++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999987642 111112335667778888888 78888887766 23343 3456678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005127 416 LVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~m~~ 437 (713)
...|...|++++|...|++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999988765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=5e-10 Score=121.50 Aligned_cols=215 Identities=11% Similarity=0.007 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005127 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 186 (713)
+++++..+....... +.+...+..+...|...|++ ++|.+.|++..+.. +.+..+|..+...|.+.|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666555432 34677777778888888888 88888888877764 2357788888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc--------CC
Q 005127 187 IMRSKNVKPDRVVFNALITACGQS---------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--------GQ 249 (713)
Q Consensus 187 ~m~~~g~~pd~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~--------g~ 249 (713)
+..+. .|+...+..+...|... |++++|.+.|++..... +.+...|..+..+|... |+
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 88776 46677777788888888 88888888888877531 33467788888888887 88
Q ss_pred HHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005127 250 VDRAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (713)
Q Consensus 250 ~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 326 (713)
+++|...|+...+.+ + .+...|..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|...
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888764 3 57888999999999999999999999998876544 667788888888999999999887
Q ss_pred HHHHH
Q 005127 327 LQEAK 331 (713)
Q Consensus 327 ~~~m~ 331 (713)
+..+.
T Consensus 315 ~~~~~ 319 (474)
T 4abn_A 315 KGKTK 319 (474)
T ss_dssp TTTCC
T ss_pred hcccc
Confidence 76653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.2e-11 Score=120.46 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA-------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI 158 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 158 (713)
..++..+...+...|++++|..+++.+.+. ..+....++..+...|...|++++|...|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666666666666666666666542 11223345555556666666666666666555432 11
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHH
Q 005127 159 -EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (713)
Q Consensus 159 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~ 237 (713)
.....++..+...|...|++++|...|++..+.. .... +........++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~--~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVL--GKDHPDVAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHH--CTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhc--CCCChHHHHHH
Confidence 1123344444455555555555555554443210 0000 00001122344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 238 GALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
..+...|...|++++|..+|+...+. + .+....++..+...|...|++++|...|+++.+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555544432 1 111234555666666666666666666666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-07 Score=105.49 Aligned_cols=393 Identities=12% Similarity=0.053 Sum_probs=266.5
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCC---hHHHHHH
Q 005127 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQV 114 (713)
Q Consensus 41 ~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~l 114 (713)
..+-+..|++.+..+ |.+...+..++..+.+.+.++.|..+|+.+. +.....|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 455677778888777 7788888888888888888999999988753 5677889999998888888 9999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------
Q 005127 115 LRLVQEAG-LKADCKLYTTLITTCAKSGKV--------DAMFEVFHEMVN-AGI-EP-NVHTYGALIDGCA--------- 173 (713)
Q Consensus 115 ~~~m~~~g-~~pd~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~--------- 173 (713)
|++.+... .+|++..|..-+....+.++. +...++|+.... .|. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998764 247888888887776665554 334578887654 466 55 4578888887543
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHH----------hcCCHHHHHHHHHHhhhCCCCCC---------
Q 005127 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNA---LITACG----------QSGAVDRAFDVLAEMNAEVHPVD--------- 231 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~---li~~~~----------~~g~~~~A~~~~~~m~~~~~~~~--------- 231 (713)
..++++.+..+|++.+......-..+|.. +-..+. ....++.|...+.++.....++.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 34467889999999985322112233322 222110 01223445555554322111111
Q ss_pred ------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-
Q 005127 232 ------P-----D---HITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC- 289 (713)
Q Consensus 232 ------p-----d---~~~~~~ll~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~- 289 (713)
| + ...|...+.---..+ ..+.+..+|+...... +.+...|-..+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 133444444322222 1234566788777653 567889999999999999999997
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHH
Q 005127 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMGA 348 (713)
Q Consensus 290 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------~~------------~~~~~~~li~~ 348 (713)
.+|++..... ..+...|...+....+.|+++.|.++|+.+..... .| ...+|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999988643 33566677788888899999999999998876410 12 23468888888
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhC-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 349 CSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (713)
Q Consensus 349 ~~~~g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (713)
..+.|.++.|+.+|....+. + ......|...+..-.+. ++.+.|.++|+...+. ++-+...+...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 88899999999999999875 2 12223343333333333 4589999999998875 3335666678888888889999
Q ss_pred HHHHHHHHHHHCC
Q 005127 427 VGLMLLSQAKEDG 439 (713)
Q Consensus 427 ~a~~~~~~m~~~g 439 (713)
.|+.+|++..+..
T Consensus 522 ~AR~lferal~~~ 534 (679)
T 4e6h_A 522 QVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-11 Score=120.15 Aligned_cols=169 Identities=15% Similarity=0.073 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCC
Q 005127 164 TYGALIDGCAKAGQVAKAFGAYGIMRSK-------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----HPVD 231 (713)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~ 231 (713)
++..+...|...|++++|..+|+++.+. ..+....++..+...|...|++++|...+.+..... ....
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444444444444444444331 111122334444444555555555555444443210 0011
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 005127 232 PDHITIGALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK------ 298 (713)
Q Consensus 232 pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 298 (713)
....++..+...|...|++++|...|+...+. + .+....++..+...|...|++++|+..|+++...
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 22345555666666666666666666655442 1 1112345667777777777777777777776553
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 299 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 299 g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (713)
+..| ...++..+...|...|++++|...+.++.+
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 223455566666666666666666666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-09 Score=119.02 Aligned_cols=217 Identities=10% Similarity=-0.028 Sum_probs=189.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (713)
Q Consensus 142 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 220 (713)
.++++.+.+++..... +.+...+..+...|...|++ ++|+..|++..+.. +.+...|..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4577788888776553 34788999999999999999 99999999998764 445889999999999999999999999
Q ss_pred HHhhhCCCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------C
Q 005127 221 AEMNAEVHPVDPDHITIGALMKACANA---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT--------G 283 (713)
Q Consensus 221 ~~m~~~~~~~~pd~~~~~~ll~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g 283 (713)
++.... .|+..++..+...|... |++++|...|++..+.. +.+...|..+..+|... |
T Consensus 161 ~~al~~----~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALTH----CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHTT----CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhh----CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 998854 57778899999999999 99999999999998876 56789999999999998 9
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005127 284 DWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 361 (713)
++++|+..|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999886431 278899999999999999999999999998875 44677899999999999999999998
Q ss_pred HHHHH
Q 005127 362 YEHMK 366 (713)
Q Consensus 362 ~~~m~ 366 (713)
+..+.
T Consensus 315 ~~~~~ 319 (474)
T 4abn_A 315 KGKTK 319 (474)
T ss_dssp TTTCC
T ss_pred hcccc
Confidence 87765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-08 Score=103.96 Aligned_cols=232 Identities=12% Similarity=0.051 Sum_probs=124.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHH
Q 005127 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV----HTYGALI 169 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li 169 (713)
...+...|++++|...++.........+.. +++.+...+...|++++|.+.+++...... ..+. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556777888888777776654222222 455666677777888888877777654210 1121 2345566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC--CHHHHHHH
Q 005127 170 DGCAKAGQVAKAFGAYGIMRSK----NVK--PD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGAL 240 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~~~----g~~--pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p--d~~~~~~l 240 (713)
..+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+.+.........+ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6777778888887777766532 211 21 234455666677777777777777765542111111 12345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 005127 241 MKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT-----IAINCCSQTGDWEFACSVYDDMTKKGVIPD---EVFLSALI 311 (713)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li 311 (713)
...+...|++++|...++......-.+ ....+. ..+..+...|++++|...+++.......+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 666666777777777666554321111 101111 122335566666666666665543321110 12333444
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 005127 312 DFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m 330 (713)
..+...|++++|...++..
T Consensus 261 ~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 4555555555555555444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-08 Score=103.78 Aligned_cols=265 Identities=11% Similarity=-0.042 Sum_probs=144.5
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHH
Q 005127 172 CAKAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKA 243 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~pd~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~~~~~ll~~ 243 (713)
+...|++++|...+++........+.. +++.+...+...|++++|.+.+.+....... .++ ..++..+...
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHH
Confidence 334455555555555544332111111 2333444445555555555555544321000 011 1223445555
Q ss_pred HHHcCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHH
Q 005127 244 CANAGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----PDEVFLSALID 312 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~li~ 312 (713)
+...|++++|...++...+. +.. | ...++..+...|...|++++|...+++....... ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66666666666666554332 111 1 2234555666667777777777777766543211 12345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHH
Q 005127 313 FAGHAGKVEAAFEILQEAKNQGISV--GIISYS----SLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITA 383 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~li~~ 383 (713)
.+...|++++|...+++.......+ ...... ..+..+...|++++|...+++..+....+ ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 7777778887777777765431111 111111 23344667888888888887776432111 12346667778
Q ss_pred HHhCCChhHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 384 LCDGDQLPKTMEVLSDMKS----LGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
+...|++++|...+++... .|..++. .++..+..++...|+.++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888888888887653 2222222 2455566778888999998888877764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-08 Score=94.80 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (713)
.+..+...|.+.|++++|...|++..+.. +.+...|..+...|...|++++|.+.+++
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333333444444444444444333221 12233333344444444444444444433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-08 Score=103.73 Aligned_cols=229 Identities=11% Similarity=-0.060 Sum_probs=155.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----CCHHHHH
Q 005127 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYN--IK----GTPEVYT 273 (713)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~----~~~~~~~ 273 (713)
...+...|++++|...|.+........ +| ..++..+...|...|+++.|...+....+.. .. ....+++
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344566788888888887765431111 22 3456667777888888888888777665421 11 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005127 274 IAINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISYS 343 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~ 343 (713)
.+...|...|++++|...|.+..+. +..+ ...++..+...|...|++++|...+.+..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888888888888888876542 1111 124567777888888999999988888776 33 33367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005127 344 SLMGACSNAKNWQKALELYEHMKSIK----LKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSIL 415 (713)
Q Consensus 344 ~li~~~~~~g~~~~A~~l~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~l 415 (713)
.+...|.+.|++++|...+++..+.. -+.....++.+...|...++ ..+|+..+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88889999999999999998876531 11223455666666777777 77777777762 22333 3455667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005127 416 LVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~m~~ 437 (713)
...|...|++++|...|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999887764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-08 Score=105.88 Aligned_cols=231 Identities=10% Similarity=0.003 Sum_probs=164.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CC-CHHHHH
Q 005127 168 LIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV---DP-DHITIG 238 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~p-d~~~~~ 238 (713)
....+...|++++|+..|++...... .+| ..++..+...|...|+++.|...+.+........ .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456678888999888888765411 122 3467777888888899888888887765421111 11 245677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005127 239 ALMKACANAGQVDRAREVYKMIHKY----NIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLS 308 (713)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~ 308 (713)
.+...|...|++++|...|+...+. +-. ....+++.+...|...|++++|+..|++... .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7888889999999999988876553 111 1235678888899999999999999998876 4333 366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 005127 309 ALIDFAGHAGKVEAAFEILQEAKNQG----ISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNAL 380 (713)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~p~-~~~~~~l 380 (713)
.+...|.+.|++++|...+++..+.. -+.....+..+...|...++ +.+|...++... ..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHH
Confidence 88889999999999999999887642 22234456677777778888 777877777632 2222 3456678
Q ss_pred HHHHHhCCChhHHHHHHHHHHH
Q 005127 381 ITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~ 402 (713)
...|...|++++|.+.|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999988764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-08 Score=92.43 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005127 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (713)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 278 (713)
.|..+...+...|++++|.+.++++... .+.+..++..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA---DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT---TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3444455555555566665555554432 12234455555555666666666666666555543 3345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (713)
Q Consensus 279 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 358 (713)
|...|++++|...|+++...... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666554322 45556666666666666666666666665553 33456666666777777777777
Q ss_pred HHHHHHHHh
Q 005127 359 LELYEHMKS 367 (713)
Q Consensus 359 ~~l~~~m~~ 367 (713)
...++...+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-08 Score=113.48 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
..+++.|..+|.+.|++++|.+.|++..+.. +.+..+|+.+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4566777777777777777777777776654 445677777777777777777777777777765433 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 005127 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 393 (713)
|...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|.+.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777776654 3356677777777888888888888887776652 23466777777788888888877
Q ss_pred HHHHHHHHH
Q 005127 394 MEVLSDMKS 402 (713)
Q Consensus 394 ~~l~~~m~~ 402 (713)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-08 Score=113.69 Aligned_cols=165 Identities=16% Similarity=0.093 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (713)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 347 (713)
+..+|+.+...|.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|+..|++..+.. +-+...|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5678999999999999999999999999987554 67899999999999999999999999998875 446889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 005127 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVE 426 (713)
Q Consensus 348 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 426 (713)
+|.+.|++++|.+.|++..+.. +-+...|+.+...|.+.|++++|++.|++..+. .| +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999988763 345789999999999999999999999999884 56 5678999999999999999
Q ss_pred HHHHHHHHHHH
Q 005127 427 VGLMLLSQAKE 437 (713)
Q Consensus 427 ~a~~~~~~m~~ 437 (713)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.9e-08 Score=92.78 Aligned_cols=190 Identities=16% Similarity=0.084 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 315 (713)
.+......+.+.|++++|...|+...+...+++...+..+..++...|++++|+..|++..+.... +...+..+..+|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHH
Confidence 333444444444444444444444444332233344444444444444444444444444443222 3334444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 005127 316 HAGKVEAAFEILQEAKNQGISVGI-------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALC 385 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~ 385 (713)
..|++++|...++...+.. +.+. .+|..+...+.+.|++++|...|++..+. .|+ ...|..+...|.
T Consensus 88 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHH
Confidence 4455555544444444432 1122 23444445555555555665555555543 233 334444444443
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
..| ...++++...+ ..+...|.... ....+.+++|+..+++..+
T Consensus 165 ~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 165 NNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 322 22333333321 12233333222 2223445666666666555
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-07 Score=92.05 Aligned_cols=195 Identities=9% Similarity=0.003 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (713)
.|+..|......+...|++++|...|+...+...+++...+..+..++...|++++|.+.|++..+... .+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 456677777777777788888888887777765336666666677777777888888888777776542 2456677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC---HHHHHH
Q 005127 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGA 239 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~~~~~ 239 (713)
..|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|.+.|.+.... .|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----SCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----CCCcccHHHHHH
Confidence 77777778888877777777652 2233 34556666666777777777777776542 343 344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
+..+|...| ..+++.+...+ ..+...|.... ....+.+++|+..|++..+.
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 555554333 23334433332 22233333222 12234455566666655554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=101.77 Aligned_cols=158 Identities=10% Similarity=0.057 Sum_probs=85.7
Q ss_pred HcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHH
Q 005127 139 KSGKVDAMFEVFHEMVNA-------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NV-KPDRVVFNALI 204 (713)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~-~pd~~~~~~li 204 (713)
..|++++|...|++..+. ..+....++..+...|...|++++|+..|++.... +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456667776666665541 11223456777777777777888887777776543 11 11234566666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCC-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C-CCCCHHHH
Q 005127 205 TACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVY 272 (713)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~-----~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~ 272 (713)
..|...|++++|.+.|.+..... ...+....++..+...|...|++++|...|+...+. . .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 66777777777777776665420 000112344555555555566666666555555443 0 01122344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 273 TIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 273 ~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
..+...|...|++++|...|++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555555555555555544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-08 Score=101.73 Aligned_cols=132 Identities=14% Similarity=0.084 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC-
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEA------GLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI- 158 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~- 158 (713)
.++..+...+...|++++|+..++.+.+. +-.| ...++..+...|...|++++|.+.|++..+. ..
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555555555566666666555555433 1111 2334555555555555555555555555432 00
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005127 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (713)
+....++..+...|...|++++|...|++.... +-.| ...++..+...|...|++++|.+.|++..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112334445555555555555555555554432 0011 12334444444445555555555554443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-07 Score=80.91 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
|..+...+...|++++|..+|+++.+.... +...+..+...+...|++++|...+..+.+.+ +.+...+..+...|..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 344444455555555555555554443221 33444444444445555555555555444432 2234444445555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.|+++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555544332 22344455555555555555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-07 Score=94.56 Aligned_cols=62 Identities=6% Similarity=0.032 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
+++.+...|.+.|++++|...|++..+....... ..|..+..+|...|++++|+..|++..+
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555555555555555555555543211111 1344455555555555555555555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-07 Score=79.32 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH
Q 005127 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (713)
Q Consensus 167 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~ 246 (713)
.+...|...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+..
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHH
Confidence 33334444444444444444433321 1223333334444444444444444444433210 1122333334444444
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 247 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
.|++++|...|+.+.+.. +.+..++..+...+.+.|++++|...|+++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444443332 2233344444444444444444444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.76 E-value=6.9e-07 Score=88.74 Aligned_cols=247 Identities=11% Similarity=0.072 Sum_probs=142.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChH
Q 005127 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (713)
Q Consensus 30 ~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 109 (713)
....-..-.|++..|+.-...+ ..... ........+.+...|+.... ..+.|....+..+...+ ..+
T Consensus 18 f~ikn~fy~G~yq~~i~e~~~~---~~~~~-~~~~~~~~Rs~iAlg~~~~~-----~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 18 FNIKQNYYTGNFVQCLQEIEKF---SKVTD-NTLLFYKAKTLLALGQYQSQ-----DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHHHHTTTCHHHHTHHHHTS---SCCCC-HHHHHHHHHHHHHTTCCCCC-----CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHHHHhhHHHHHHHHHHhc---Cccch-HHHHHHHHHHHHHcCCCccC-----CCCCHHHHHHHHHHHHh-ccc---
Confidence 3444555679999888843322 21111 12222233444444443321 12234433433333322 222
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005127 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 188 (713)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566666666554 45566666777778888888888888887765543 125566777778888888888888888888
Q ss_pred HhCCCCC-----CHHHHHHHHHHHHh--cC--CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005127 189 RSKNVKP-----DRVVFNALITACGQ--SG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (713)
Q Consensus 189 ~~~g~~p-----d~~~~~~li~~~~~--~g--~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~ 259 (713)
.+. .| +..+...|..++.. .| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 665 45 24555555555322 23 778888888887543 34433334445577777888888877776
Q ss_pred HHhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 260 IHKYN---------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 260 m~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 299 (713)
+.+.. -+.++.+...+|......|+ +|.+++.++.+..
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 55421 13355566455555555565 6777777777654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-06 Score=84.45 Aligned_cols=183 Identities=16% Similarity=0.126 Sum_probs=92.5
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (713)
Q Consensus 216 A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 294 (713)
|...|++.... + .++..++..+..++...|++++|++++......+- ..+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~--~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKD--K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTT--S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhc--C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555554432 1 23344444555666666666666666665544432 13445566666666666666666666666
Q ss_pred HHHCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 295 MTKKGVIP-----DEVFLSALIDFAG--HAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 295 m~~~g~~p-----~~~t~~~li~~~~--~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
|.+. .| +..+...+..++. ..| +..+|..+|+++.+.. |+..+...++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6554 23 2344444444422 223 5666666666665432 33222333333566666666666666654
Q ss_pred HhC-----C----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005127 366 KSI-----K----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (713)
Q Consensus 366 ~~~-----~----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (713)
.+. . -+.|..+.-.+|......|+ +|.++++++.+ ..|+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 431 0 02234444344444444444 56666666665 24544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-05 Score=86.97 Aligned_cols=102 Identities=11% Similarity=0.129 Sum_probs=60.4
Q ss_pred cCC-HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHhCCC-hHHHHH
Q 005127 38 QGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQ 113 (713)
Q Consensus 38 ~g~-~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~ 113 (713)
.|+ ++.|..+|+.+...- |. +..+.+..+|+... .|++..|...+....+.++ .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 453 666777777666532 22 45777777777643 3677788777776666553 345566
Q ss_pred HHHHHHHc-CCC-CCHHHHHHHHHHHH----HcCChhHHHHHHHHHHHC
Q 005127 114 VLRLVQEA-GLK-ADCKLYTTLITTCA----KSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 114 l~~~m~~~-g~~-pd~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~ 156 (713)
+|+..+.. |.. .+...|...+..+. ..++++.+.++|+.....
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 77766553 432 35566766666543 235677788888888764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-07 Score=93.06 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH----
Q 005127 340 ISYSSLMGACSNA-KNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT---- 409 (713)
Q Consensus 340 ~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---- 409 (713)
.+++.+...|... |++++|...|++..+... ..+ ..+|+.+...|.+.|++++|+..|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3566666777775 777777777776654210 001 345777778888888888888888887764322111
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 410 --ITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 410 --~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
.+|..+..++...|++++|...|++..+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1456666777778888888888877665
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.7e-07 Score=88.24 Aligned_cols=99 Identities=11% Similarity=0.013 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC-HHHH
Q 005127 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD-RVVF 200 (713)
Q Consensus 126 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd-~~~~ 200 (713)
+...+..+...+.+.|++++|...|+++.+.... + ..++..+..+|.+.|++++|+..|++..+... .|+ ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4555666666667777777777777777665311 2 45666666677777777777777777765421 111 3445
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHhhh
Q 005127 201 NALITACGQ--------SGAVDRAFDVLAEMNA 225 (713)
Q Consensus 201 ~~li~~~~~--------~g~~~~A~~~~~~m~~ 225 (713)
..+..++.. .|++++|...|+++..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 555566666 6667777777766654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.2e-06 Score=83.21 Aligned_cols=225 Identities=8% Similarity=0.058 Sum_probs=146.7
Q ss_pred HHHHhcCCH-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhH--HHHHHHHHhhhCC---CCCHHHHHHHHHHH----
Q 005127 33 NRLIRQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVP---NPTLSTFNMLMSVC---- 102 (713)
Q Consensus 33 ~~L~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~li~~~---- 102 (713)
..+.+.|.+ ++|+++++.++..+ |........-..+....+ .+++++++++.+. +.+..+|+.-...+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 344455554 68999999888877 666666555566666666 7888888877643 44556676655544
Q ss_pred HhC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005127 103 ASS---KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (713)
Q Consensus 103 ~~~---g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (713)
... +++++++.+++.+.+.. +-+-.+|+.-.-.+.+.+.++ ++++.++++.+.. ..|-..|+.-...+.+.+.
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGG
T ss_pred HhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 444 67788888888887764 446667777777777777777 7888888887765 3377777766666666555
Q ss_pred ------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCH
Q 005127 178 ------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (713)
Q Consensus 178 ------~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~ 250 (713)
++++++.++++.... +-|...|+.+-..+.+.|+... +..+..++......-..+...+..+.++|.+.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 777777777777653 4567777777777766666433 33444444321100123456666677777777777
Q ss_pred HHHHHHHHHHHh
Q 005127 251 DRAREVYKMIHK 262 (713)
Q Consensus 251 ~~A~~~~~~m~~ 262 (713)
++|.++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777777664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.4e-07 Score=84.24 Aligned_cols=73 Identities=11% Similarity=0.056 Sum_probs=30.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (713)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 384 (713)
+..+|.+.|++++|...|+...+.. +-+...+..+...|...|++++|...|++..+.. +.+...|..+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3333444444444444444444332 2233444444444444444444444444444331 12333444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.67 E-value=9.2e-07 Score=87.24 Aligned_cols=102 Identities=9% Similarity=0.010 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CC-CHH
Q 005127 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EP-NVH 163 (713)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~-~~~ 163 (713)
+.+...+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+... .| ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4456666667777788888888888888887753 223 56777788888888888888888888877532 11 245
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHhC
Q 005127 164 TYGALIDGCAK--------AGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 164 ~~~~li~~~~~--------~g~~~~A~~l~~~m~~~ 191 (713)
++..+..++.. .|++++|+..|++....
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 56677777777 88888888888888765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.67 E-value=6e-07 Score=85.26 Aligned_cols=191 Identities=8% Similarity=-0.019 Sum_probs=128.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCC
Q 005127 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (713)
Q Consensus 28 ~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (713)
.+..-..+++.|++++|+..|++..+.+ |.+...+.... ... ........++.+..++.+.|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~--~~~-------------~~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTN--VDK-------------NSEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHH--SCT-------------TSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhh--hcc-------------hhhhhHHHHHHHHHHHHHCCC
Confidence 3444456779999999999999999876 55544332210 000 000112334557778888999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Q 005127 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAY 185 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~l~ 185 (713)
+++|...|+...+.. +.+...+..+..+|...|++++|...|++..+.. +.+..+|..+...|...|+ ...+...|
T Consensus 70 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 70 YDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999888875 4567888889999999999999999999988874 3367788888888766554 44556666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 005127 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (713)
Q Consensus 186 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~ 243 (713)
..... ..|....+..+..++...|++++|...|++... +.|+......+...
T Consensus 148 ~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~----l~P~~~~~~~l~~i 199 (208)
T 3urz_A 148 KKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL----RFPSTEAQKTLDKI 199 (208)
T ss_dssp C---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT----TSCCHHHHHHHHHH
T ss_pred HHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 65542 122233344455566778899999999998874 46777666665553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.6e-07 Score=84.23 Aligned_cols=160 Identities=11% Similarity=0.150 Sum_probs=89.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCHHHHHHHHHH-HH
Q 005127 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSV-CA 103 (713)
Q Consensus 27 ~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~-~~ 103 (713)
..+..-..+.+.|++++|+..|++..+.. |.+...+..+..++...|++++|+..|+.+. .|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 34444556667888888888887777655 6666666666777777777777777777654 2233332222111 11
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 005127 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKAF 182 (713)
Q Consensus 104 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~ 182 (713)
..+....|...++...+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122233455555555442 2245555556666666666666666666655543221 2345555555666666666666
Q ss_pred HHHHHHH
Q 005127 183 GAYGIMR 189 (713)
Q Consensus 183 ~l~~~m~ 189 (713)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.3e-07 Score=102.23 Aligned_cols=170 Identities=8% Similarity=-0.035 Sum_probs=123.0
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHh
Q 005127 36 IRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (713)
...|++++|++.|++.. +.. |.+...+..+...+...|++++|+..|+... +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 57888888988888887 443 5666666667777777888888888887643 4567778888888888
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005127 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 184 (713)
.|++++|...|++..+.. +.+...+..+..+|.+.|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888887764 3356677778888888888888 88888877764 23667788888888888888888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 005127 185 YGIMRSKNVKPD-RVVFNALITACGQSGA 212 (713)
Q Consensus 185 ~~~m~~~g~~pd-~~~~~~li~~~~~~g~ 212 (713)
|++..+. .|+ ...+..+..++...+.
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 8877765 344 4556666666655443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.2e-06 Score=79.63 Aligned_cols=173 Identities=14% Similarity=-0.022 Sum_probs=102.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 005127 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAYG 186 (713)
Q Consensus 111 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~l~~ 186 (713)
|++.|+...+.| +...+..|...|...+++++|.++|++..+.| +...+..|-..|.. + ++++|+.+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455555555543 55566666666666677777777777666653 45556666666655 5 6677777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHH----cCCHHHHHH
Q 005127 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACAN----AGQVDRARE 255 (713)
Q Consensus 187 ~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd---~~~~~~ll~~~~~----~g~~~~A~~ 255 (713)
+..+.| +...+..|...|.. .+++++|.+.|.+.... .++ ...+..|..+|.. .+++++|..
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 666554 45556666666655 56667777776665532 221 4555566666666 556666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 005127 256 VYKMIHKYNIKGTPEVYTIAINCCSQT-G-----DWEFACSVYDDMTKKG 299 (713)
Q Consensus 256 ~~~~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g 299 (713)
.|+...+. ..+...+..|...|... | ++++|...|+...+.|
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666554 12234555555555432 2 5666666666655554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-06 Score=88.31 Aligned_cols=161 Identities=11% Similarity=-0.001 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 005127 59 MDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT-TLI 134 (713)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~-~li 134 (713)
.....+..+...+...|++++|...|+.. .+.+...+..+...+.+.|++++|...++.+... .|+..... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 33333334444444455555555555443 1234445555555555555555555555554433 22322211 112
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCH
Q 005127 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PDRVVFNALITACGQSGAV 213 (713)
Q Consensus 135 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~~~~~li~~~~~~g~~ 213 (713)
..+...++.+.|.+.|++..... +.+...+..+...|...|++++|+..|.++.+.... .+...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 22334445555555555555442 224455555555555555555555555555544211 0134455555555555555
Q ss_pred HHHHHHHHH
Q 005127 214 DRAFDVLAE 222 (713)
Q Consensus 214 ~~A~~~~~~ 222 (713)
++|...|++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 555555544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.5e-06 Score=78.30 Aligned_cols=176 Identities=11% Similarity=-0.033 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 005127 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG----AVDRAFDVL 220 (713)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~~A~~~~ 220 (713)
+|++.|++..+.| +...+..|...|...+++++|+..|++..+.| +...+..|-..|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777653 66777777777777888888888888877765 56666666666666 5 777777777
Q ss_pred HHhhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHH
Q 005127 221 AEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQ----TGDWEFACSV 291 (713)
Q Consensus 221 ~~m~~~~~~~~pd~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l 291 (713)
.+.... .+...+..|...|.. .+++++|...|+...+.+.. .++..+..|...|.. .+++++|+..
T Consensus 77 ~~A~~~-----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEA-----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHT-----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHC-----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 776542 244566666666665 66777777777776665421 114566666666666 5666777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 005127 292 YDDMTKKGVIPDEVFLSALIDFAGHA-G-----KVEAAFEILQEAKNQG 334 (713)
Q Consensus 292 ~~~m~~~g~~p~~~t~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 334 (713)
|++..+.+- +...+..|...|... | +.++|...|+...+.|
T Consensus 152 ~~~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 766665511 223444455555432 2 5666666666665555
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.5e-07 Score=101.49 Aligned_cols=155 Identities=14% Similarity=-0.004 Sum_probs=76.2
Q ss_pred HhcCCHHHHHHHHHHhhhC-----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 005127 208 GQSGAVDRAFDVLAEMNAE-----VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (713)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~-----~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 282 (713)
...|++++|++.+++.... ....+.+...+..+...|.+.|++++|...|+...+.+ +.+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 4556666666666665410 00112233445555555555566666665555555443 33445555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005127 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (713)
Q Consensus 283 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 362 (713)
|++++|+..|++..+.... +...+..+..+|.+.|++++ ...|++..+.+ +.+...+..+..+|.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555544322 33444444445555555555 55554444432 223344444444444455555554444
Q ss_pred HHHH
Q 005127 363 EHMK 366 (713)
Q Consensus 363 ~~m~ 366 (713)
++..
T Consensus 558 ~~al 561 (681)
T 2pzi_A 558 DEVP 561 (681)
T ss_dssp HTSC
T ss_pred Hhhc
Confidence 4443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.53 E-value=8.3e-06 Score=78.34 Aligned_cols=204 Identities=8% Similarity=-0.036 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGA 167 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ 167 (713)
...+..+...+.+.|++++|...|+.+.+...... ...+..+..+|.+.|++++|...|+++.+....... .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 33444555566666777777777777666432111 245566666777777777777777776665322111 13333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH-HHHHHHHHHHHH
Q 005127 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACAN 246 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~~~~~ll~~~~~ 246 (713)
+..++.+.+.. .+ ..|..+...+...|+.++|...|+++... .|+. .++......
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~P~~~~a~~a~~~l--- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG----YPNSQYTTDATKRL--- 139 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT----CTTCTTHHHHHHHH---
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH----CcCChhHHHHHHHH---
Confidence 33333332210 00 01112223334456778888888877653 2332 222111100
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 005127 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAF 324 (713)
Q Consensus 247 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~ 324 (713)
+ .+...+. .....+...|.+.|++++|+..|+++.+...... ...+..+..+|.+.|+.++|.
T Consensus 140 -~------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 140 -V------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp -H------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -H------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 0 0000000 1123455667777888888888887776533211 245666777778888888888
Q ss_pred HHHHHHHHCC
Q 005127 325 EILQEAKNQG 334 (713)
Q Consensus 325 ~~~~~m~~~g 334 (713)
+.++.+...+
T Consensus 205 ~~~~~l~~~~ 214 (225)
T 2yhc_A 205 KVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhhC
Confidence 8887776654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-06 Score=86.06 Aligned_cols=166 Identities=10% Similarity=0.008 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005127 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (713)
Q Consensus 125 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 204 (713)
.+...+..+...+...|++++|...|++..+.. +-+...+..+...|.+.|++++|...|++.... .|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 344455566666667777777777777766653 225566666777777777777777777766554 34433322222
Q ss_pred -HHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhc
Q 005127 205 -TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQT 282 (713)
Q Consensus 205 -~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~ 282 (713)
..+.+.++.++|.+.+++.... -+.+...+..+...|...|++++|...|..+.+.+... +...+..++..|...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2345556666666666666543 13345566667777777777777777777776654211 255677777777777
Q ss_pred CCHHHHHHHHHHHH
Q 005127 283 GDWEFACSVYDDMT 296 (713)
Q Consensus 283 g~~~~A~~l~~~m~ 296 (713)
|+.++|...|++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 77777777666543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.6e-05 Score=75.69 Aligned_cols=115 Identities=9% Similarity=0.004 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---CCH
Q 005127 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----AKA---GQV 178 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~ 178 (713)
.++|+.+++.++... +-+..+|+.--..+...+ +++++++.++.+..... .+..+|+.--..+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 345666666555543 223444555555555555 55566666655555432 2334444333333 233 445
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhh
Q 005127 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--RAFDVLAEMNA 225 (713)
Q Consensus 179 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~--~A~~~~~~m~~ 225 (713)
++++.+++++.+.. +-|..+|+.-.-.+.+.|.++ ++++.++++..
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 55555555555432 334444444444444444444 44555544443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=80.91 Aligned_cols=160 Identities=12% Similarity=0.086 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 005127 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGH 316 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~ 316 (713)
..+...+.+.|++++|...|+...+.+ +.+...+..+...|...|++++|+..|++...... +...+...... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 344455666666666666666555443 34456666666667777777777777766554432 33222211111 111
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChhHHHH
Q 005127 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTME 395 (713)
Q Consensus 317 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 395 (713)
.+....|...++...+.. +.+...+..+...|...|++++|...|+++.+....+ +...+..+...|...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 112223455666655543 2345666666777777777777777777766543111 24466666677777777777777
Q ss_pred HHHHHH
Q 005127 396 VLSDMK 401 (713)
Q Consensus 396 l~~~m~ 401 (713)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.52 E-value=8.3e-06 Score=78.32 Aligned_cols=205 Identities=9% Similarity=-0.030 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCH-HHHHH
Q 005127 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-P-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PDR-VVFNA 202 (713)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~-~~~~~ 202 (713)
...+..+...+.+.|++++|...|+++.+.... | ....+..+..+|.+.|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 334455566666777777777777777664321 1 1245666667777777777777777777654211 111 12333
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 005127 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (713)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 282 (713)
+..++...+.. .+. .+..+...+...|++++|...|+.+.+.. +.+...+.+....
T Consensus 84 ~g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l---- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----
T ss_pred HHHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----
Confidence 33333322210 110 11122233445678888888888887764 2233333221110
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 005127 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKNWQKALE 360 (713)
Q Consensus 283 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~ 360 (713)
..+...+. .....+...|.+.|++++|...|+.+.+..... ....+..+..+|.+.|+.++|.+
T Consensus 140 ------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 140 ------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp ------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 00111110 112345677889999999999999998864221 13578889999999999999999
Q ss_pred HHHHHHhCC
Q 005127 361 LYEHMKSIK 369 (713)
Q Consensus 361 l~~~m~~~~ 369 (713)
.++.+...+
T Consensus 206 ~~~~l~~~~ 214 (225)
T 2yhc_A 206 VAKIIAANS 214 (225)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhC
Confidence 999988763
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.9e-06 Score=94.22 Aligned_cols=153 Identities=12% Similarity=-0.036 Sum_probs=86.9
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (713)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (713)
.|++++|.+.|++.... -+.+...+..+...|.+.|++++|...|++..+.+ +.+...|..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35667777777766542 12235566666677777777777777777766654 445666677777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 005127 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 366 (713)
Q Consensus 290 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~ 366 (713)
+.|++..+.... +...+..+..+|...|++++|.+.+++..+.. +.+...+..+...|... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 777776665432 45566666666666777777777766666553 23455666666666666 66666666666665
Q ss_pred hC
Q 005127 367 SI 368 (713)
Q Consensus 367 ~~ 368 (713)
+.
T Consensus 156 ~~ 157 (568)
T 2vsy_A 156 AQ 157 (568)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=78.44 Aligned_cols=142 Identities=8% Similarity=-0.061 Sum_probs=93.2
Q ss_pred HHHHHHhhHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 005127 67 FFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (713)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 143 (713)
++.+..+.|++++|+..|....+. +...+..+...|.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344556677888888887765432 23345566777788888888888888877764 44677777788888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005127 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNVKPDRVVFNALITACGQSG 211 (713)
Q Consensus 144 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~~g~~pd~~~~~~li~~~~~~g 211 (713)
++|...|++..+.. +-+..+|..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 88888888877764 22566777777777777777665554 46665542 334566665555555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.9e-06 Score=85.99 Aligned_cols=155 Identities=14% Similarity=0.026 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGII 340 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~ 340 (713)
+|+.+...|.+.|++++|+..|++....- -.|. ..++..+...|.. |++++|+..|++..+. +.. ....
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 45555556666666666666665543320 0111 2345555666666 7777777777665542 110 0135
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC------H
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN------T 409 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~ 409 (713)
+++.+...|.+.|++++|...|++..+. +..+. ...+..+...+...|++++|+..|++.. . .|+ .
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~ 233 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHH
Confidence 6777778888888888888888877642 11111 2256666677777788888888888876 3 332 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHH
Q 005127 410 ITYSILLVACERKDDVEVGLM 430 (713)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~ 430 (713)
.+...++.++ ..|+.+....
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHH
Confidence 2334444444 4566655544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-06 Score=86.50 Aligned_cols=230 Identities=11% Similarity=-0.020 Sum_probs=142.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 005127 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 116 (713)
..|++++|.+++++..+... .. ++...+++++|...|.. ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 45788899999988776431 10 01113456666665543 3556777788888888877
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005127 117 LVQEAGL---KA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI---EPN--VHTYGALIDGCAKAGQVAKAFGAYG 186 (713)
Q Consensus 117 ~m~~~g~---~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~li~~~~~~g~~~~A~~l~~ 186 (713)
+..+... .+ -..+|+.+..+|...|++++|...|++..+.-. .+. ..+++.+...|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 6654311 11 134677788888888888888888877654310 111 3467777777877 88888888888
Q ss_pred HHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005127 187 IMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH--PVDPD-HITIGALMKACANAGQVDRAREVYK 258 (713)
Q Consensus 187 ~m~~~----g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (713)
+.... |-.+ ...+++.+...|.+.|++++|+..|++...... +..+. ...+..+..++...|++++|...|+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76542 1100 135677778888888888888888877654211 11222 2356666677777888888888888
Q ss_pred HHHhcCCC--CC--HHHHHHHHHHHHhcCCHHHHHHH
Q 005127 259 MIHKYNIK--GT--PEVYTIAINCCSQTGDWEFACSV 291 (713)
Q Consensus 259 ~m~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~l 291 (713)
... .... .. ......++.++ ..|+.+.+..+
T Consensus 220 ~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 220 ESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 776 3211 11 12344555555 56776666553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=78.13 Aligned_cols=110 Identities=9% Similarity=0.022 Sum_probs=54.1
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 209 QSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (713)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (713)
..|++++|+..+...... .|+ ...+..+...|.+.|++++|...|+...+.+ +.+..+|..+..+|.+.|++++
T Consensus 9 ~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 344555555555544321 222 2233444555555555555555555555543 3345555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005127 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (713)
Q Consensus 288 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 324 (713)
|+..|++..+.... +...+..+...|.+.|+.++|.
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHH
Confidence 55555555544322 3444555555555555544433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.8e-06 Score=92.44 Aligned_cols=154 Identities=11% Similarity=0.022 Sum_probs=110.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005127 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (713)
Q Consensus 175 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~ 254 (713)
.|++++|+..|++..+.. +.+...|..+...+.+.|++++|.+.|++.... .+.+...+..+..+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 477888999998887663 345778888888888999999999999888753 1334677888888889999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 005127 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA---GKVEAAFEILQEAK 331 (713)
Q Consensus 255 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~~~~~~m~ 331 (713)
..|++..+.+ +.+...|..+...|.+.|++++|.+.|++..+.... +...+..+..++... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9998888765 556788888889999999999999999988876543 567788888888888 89999999998887
Q ss_pred HCC
Q 005127 332 NQG 334 (713)
Q Consensus 332 ~~g 334 (713)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00027 Score=76.31 Aligned_cols=354 Identities=8% Similarity=-0.019 Sum_probs=185.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHH-HHHHHHHhhhC------CCCCHHHHHHHHHHHH----hC
Q 005127 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFFKLV------PNPTLSTFNMLMSVCA----SS 105 (713)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~------~~~~~~~~~~li~~~~----~~ 105 (713)
-.|+++.|..+|+.....- | +..+....+....+.+. .+.....|+.. ...+...|...+..+. ..
T Consensus 26 P~~~~e~~~~iferal~~~--p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 26 MSKDYRSLESLFGRCLKKS--Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp HTTCHHHHHHHHHHHSTTC--C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCCCHHHHHHHHHHHhccC--C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 3589999999999998743 5 33344445555544432 23344455532 1346788888887654 24
Q ss_pred CChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005127 106 KDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (713)
++.+.+..+|++.+.. ++. ...|......- +......+.++..+.. ..+..|..
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---------------------~~y~~ar~ 158 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGSLSELWKDFENFE-LELNKITGKKIVGDTL---------------------PIFQSSFQ 158 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------HHHHHHHH
Confidence 5788899999999873 222 12222221111 1111112222221111 11222222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005127 184 AYGIMRSKNVKPDRVVFNALITACGQSG--A-----VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (713)
Q Consensus 184 l~~~m~~~g~~pd~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~ 256 (713)
+++.+...--..+...|...+.--...+ - .+.+..+|+++... .+.+...|...+..+.+.|+++.|..+
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2222211000012233433333221110 0 23345556555542 122344555555555666666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 005127 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------GVIP---DEVFLSALIDFAGHAGKVEAAF 324 (713)
Q Consensus 257 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~p---~~~t~~~li~~~~~~g~~~~a~ 324 (713)
|+..... +.+...|.. |......++. ++.+.+. +..+ ....|...+..+.+.+..+.|.
T Consensus 236 ~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666555 333333322 1111111111 1221110 0001 1244666666666777889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 005127 325 EILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (713)
Q Consensus 325 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (713)
.+|... +.. ..+..+|......-...+ +.+.|..+|+...+.- +.+...|...+.-..+.|+.+.|..+|+++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 999888 321 234445543333333334 6899999999887642 2335566777777778899999999998873
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 404 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
.....|...+.--...|+.+.+..+++++.+
T Consensus 382 ---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 ---KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2466777777777778999999998887764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-05 Score=74.84 Aligned_cols=127 Identities=14% Similarity=-0.024 Sum_probs=105.9
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005127 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (713)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 144 (713)
..++..+...|++++|+..|+...+++...|..+...+...|++++|...++...+.. +.+...+..+..+|...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455566678889999999998888888999999999999999999999999988875 557788999999999999999
Q ss_pred HHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005127 145 AMFEVFHEMVNAGIE--------------P-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (713)
Q Consensus 145 ~A~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 192 (713)
+|.+.|++..+.... | +..++..+..+|.+.|++++|...|++..+..
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999998875321 1 12678888889999999999999999988763
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.6e-05 Score=66.02 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (713)
...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|..+|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555566666666666666666665543 3345555666666666666666666666665543 2245555556666
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 005127 172 CAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~ 191 (713)
|...|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666655544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.29 E-value=8.5e-05 Score=74.41 Aligned_cols=60 Identities=7% Similarity=-0.110 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhCCC-hhHHHHHHHHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKS----IKLKPT-VSTMNALITALCDGDQ-LPKTMEVLSDM 400 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p~-~~~~~~li~~~~~~g~-~~~A~~l~~~m 400 (713)
++..+...|.+.|++++|...+++..+ .+..+. ..+|..+...|.+.|+ +++|++.|++.
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 445555555555555555555554432 111111 3455555555555553 35555555554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00049 Score=69.66 Aligned_cols=182 Identities=6% Similarity=-0.002 Sum_probs=104.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (713)
++.+.....+....++|+++++.++... +-+..+|+.--..+...+ .++++++.++.+..... .+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 3333334444555567777777777764 335556666666666666 47777777777776643 36667776666666
Q ss_pred Hc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 005127 174 KA-G-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--------RAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (713)
Q Consensus 174 ~~-g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~pd~~~~~~ll~~ 243 (713)
+. + ++++++.+++++.+.. +-|..+|+.-.-.+.+.|.++ ++++.++++... -..|..+|+.....
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYL 210 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 65 5 6777777777777653 445666665444444433333 566666655543 12345555555555
Q ss_pred HHHcCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 005127 244 CANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (713)
Q Consensus 244 ~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 283 (713)
+.+.+. ++++.+.++...... +.|...|+-+-..+.+.|
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 555544 455555555555444 344555554444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00011 Score=73.46 Aligned_cols=128 Identities=9% Similarity=0.032 Sum_probs=86.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHH
Q 005127 310 LIDFAGHAGKVEAAFEILQEAKNQGIS-VG----IISYSSLMGACSNAKNWQKALELYEHMKS----I-KLKPT-VSTMN 378 (713)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~-~~~p~-~~~~~ 378 (713)
+...+...+++++|...+..+.+.... .+ ..+++.+...|...|++++|...|++..+ . +..+. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 444444555666666666666553211 11 23577777777777777777777777662 1 11222 34788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 005127 379 ALITALCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDD-VEVGLMLLSQAKE 437 (713)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~ 437 (713)
.+...|.+.|++++|++.+++..+ .+..+. ..+|..+..++.+.|+ +++|...+++..+
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999999999999988764 232333 5678888899999994 6999999988764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.3e-05 Score=71.03 Aligned_cols=125 Identities=12% Similarity=-0.018 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 005127 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (713)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 281 (713)
.+...+...|++++|...|.+.. .|+..++..+...|.+.|++++|...|+...+.+ +.+...|..+..+|..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 34444555555555555555432 2344455555555555555555555555555443 3344555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 282 TGDWEFACSVYDDMTKKGVI--------------P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 282 ~g~~~~A~~l~~~m~~~g~~--------------p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
.|++++|+..|++..+.... | +...+..+..+|.+.|++++|...++...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666555543221 0 1134445555555555555555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3.4e-05 Score=69.42 Aligned_cols=93 Identities=14% Similarity=0.045 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 351 (713)
|..+...+...|++++|...|++....... +...+..+...+...|++++|...+....+.. +.+..++..+...|.+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 334444444444444444444444433221 33334444444444444444444444443332 2233344444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 005127 352 AKNWQKALELYEHMK 366 (713)
Q Consensus 352 ~g~~~~A~~l~~~m~ 366 (713)
.|++++|...|++..
T Consensus 94 ~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 94 LGKFRAALRDYETVV 108 (166)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 444444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.22 E-value=5.5e-05 Score=67.99 Aligned_cols=128 Identities=12% Similarity=-0.013 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 315 (713)
.+..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|...|++....... +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 44555556666677777777776666544 345666677777777777777777777776665432 5566666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 316 HAGKVEAAFEILQEAKNQGISVGIISY--SSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
..|++++|...+..+.+.. +.+...+ ..+...+.+.|++++|...+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777766653 2233333 333333566677777777766543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00089 Score=67.76 Aligned_cols=174 Identities=6% Similarity=-0.070 Sum_probs=128.5
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 005127 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-G-AVDR 215 (713)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~-g-~~~~ 215 (713)
+....++|+++++.+..... -+..+|+.--..+...+ .+++++.+++.+.... +-+..+|+.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 34556789999999998753 36778888877888888 5999999999999875 45778888776666666 6 8899
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---
Q 005127 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD--------RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--- 284 (713)
Q Consensus 216 A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--- 284 (713)
++++++.+... -+.|..+|+--.-++.+.|.++ ++.+.++.+.+.+ +.|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~---dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLP---DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSS---CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 99999998764 2446667766655555555555 8888888888876 5577788887777777765
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005127 285 ----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (713)
Q Consensus 285 ----~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 319 (713)
++++++.+++.....+. |...|.-+-..+.+.|.
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 67888888887776655 66777666655555554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.21 E-value=6e-05 Score=63.70 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDM 295 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m 295 (713)
++..+...+...|++++|...|+++
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3333333333333444443333333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0001 Score=73.80 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-----VFLSALIDFAGHAGKVEAAFEILQEAKNQGI---SVG--II 340 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~--~~ 340 (713)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+....+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556667777777777777776654322111 1233344556677788888888887765321 111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-H
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSI-KLKPT-----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN-T 409 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 409 (713)
+++.+...|...|++++|...|++..+. ...|+ ..+|+.+...|...|++++|++.+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888888889999888888877621 00122 257888888899999999999998887542 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 005127 410 ITYSILLVACERKDDVEVG-LMLLSQAKE 437 (713)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a-~~~~~~m~~ 437 (713)
.+|..+..++.+.|+.++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888889999999999 776776653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00019 Score=71.81 Aligned_cols=166 Identities=5% Similarity=-0.065 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGT-----PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV---IPD--EV 305 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 305 (713)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334455566677777777777766555432111 12234455666777888888888888765321 112 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-H
Q 005127 306 FLSALIDFAGHAGKVEAAFEILQEAKN---Q-GISV--GIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-V 374 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~-~ 374 (713)
++..+...|...|++++|...+.+..+ . +..+ ...+++.+...|.+.|++++|...|++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 777888888888888888888887762 2 1111 1257888888999999999999999887642 11111 5
Q ss_pred HHHHHHHHHHHhCCChhHH-HHHHHHHH
Q 005127 375 STMNALITALCDGDQLPKT-MEVLSDMK 401 (713)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A-~~l~~~m~ 401 (713)
.+|..+...|.+.|++++| ...|++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788888999999999999 77677654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-05 Score=74.08 Aligned_cols=24 Identities=8% Similarity=-0.062 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 413 SILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
..+..++...|++++|...+++..
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344444555555555555554444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.6e-05 Score=72.34 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=111.4
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHCCCCCC---------------
Q 005127 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTL-------ITTCAKSGKVDAMFEVFHEMVNAGIEPN--------------- 161 (713)
Q Consensus 104 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------- 161 (713)
..++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677777888887777764 3356666666 3444444444444444443332 1111
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-
Q 005127 162 -------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD- 233 (713)
Q Consensus 162 -------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd- 233 (713)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|...... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-Cccc
Confidence 2233445666777778888877777776543 44334455555677777777777777644321 0 111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 234 -HITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 299 (713)
...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2245556667777777777777777766433213 23455566666777777777777777776653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=6.9e-05 Score=64.36 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (713)
..|......+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345555566666666666666666666553 3455666666666666666666666666666553 22455666666666
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 005127 173 AKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~ 191 (713)
...|++++|+..|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=6.2e-05 Score=64.25 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (713)
...|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555556666666666666666665543 3345556666666666666666666666665542 2245555566666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005127 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 212 (713)
|.+.|++++|...|++..... +.+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666655442 2244455555555544443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.13 E-value=7.6e-06 Score=81.66 Aligned_cols=98 Identities=8% Similarity=-0.081 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666666666666666666666543 3355666666666666666666666666666543 224556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 005127 171 GCAKAGQVAKAFGAYGIMRS 190 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~ 190 (713)
+|...|++++|+..|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-05 Score=71.41 Aligned_cols=99 Identities=7% Similarity=-0.047 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|...|++..+... .+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHH
Confidence 44566667777778888888888888877764 44677777788888888888888888888777642 25667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 005127 171 GCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~ 191 (713)
+|.+.|++++|+..|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00086 Score=67.51 Aligned_cols=184 Identities=8% Similarity=0.030 Sum_probs=122.4
Q ss_pred hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHH----------HHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 005127 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (713)
Q Consensus 37 ~~g~~~-~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~ 102 (713)
+.|.++ +|+++++.+...+ |.+..+...-..+....+. +++++.+++.+. +.+..+|+.-.-.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456665 7899999999877 6555544333333333332 577777777543 56777888777777
Q ss_pred HhCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----
Q 005127 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (713)
Q Consensus 103 ~~~g--~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 175 (713)
...+ .+++++.++..+.+.. +-|..+|+.-.-.+...|. ++++++.++.+.+.. +.|..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 7777 4788888888888775 4567777777777777777 478888888888765 34777777766666554
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhh
Q 005127 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-----------GAVDRAFDVLAEMNA 225 (713)
Q Consensus 176 ----------g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~ 225 (713)
+.++++++.+.+..... +-|...|+.+-..+.+. +.++++++.++++..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 34677777777777653 44667776555444444 235566666666654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.13 E-value=8e-05 Score=63.92 Aligned_cols=93 Identities=11% Similarity=-0.018 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005127 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 317 (713)
......|.+.|++++|...|++..+.+ +.+..+|..+..+|.+.|++++|+..|++..+.... +...|..+..++...
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHC
Confidence 333444444444444444444444433 233444444444444444444444444444433222 333444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 005127 318 GKVEAAFEILQEAKN 332 (713)
Q Consensus 318 g~~~~a~~~~~~m~~ 332 (713)
|++++|...|+...+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.1e-05 Score=64.25 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
...+..+...+.+.|++++|...|+...+.. +.+..++..+...|...|++++|+..|++..+.... +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 3344444455555555555555555554433 223445555555555555555555555555443221 34444444445
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005127 314 AGHAGKVEAAFEILQEAKN 332 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~ 332 (713)
+...|++++|...+....+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555554444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.3e-05 Score=73.62 Aligned_cols=190 Identities=11% Similarity=0.016 Sum_probs=125.7
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHh------------CCCC-----
Q 005127 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-------IDGCAKAGQVAKAFGAYGIMRS------------KNVK----- 194 (713)
Q Consensus 139 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~------------~g~~----- 194 (713)
..++...|.+.|.+..+.. +-....|+.+ ...+.+.++..+++..+..-.. .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5799999999999999875 2367788877 4566666666666666655544 2210
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CH
Q 005127 195 ---PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TP 269 (713)
Q Consensus 195 ---pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~ 269 (713)
--...+-.+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...... .| ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 00223344567778889999999999877642 3544455566667888888888888887443322 11 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 334 (713)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3567777778888888888888887764432243 2244555566777788888888877777654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.11 E-value=8.8e-06 Score=81.19 Aligned_cols=94 Identities=14% Similarity=-0.073 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 315 (713)
.+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|+..+++..+.... +...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34444444455555555555555444433 224444555555555555555555555554443322 3444444444555
Q ss_pred hcCCHHHHHHHHHHHH
Q 005127 316 HAGKVEAAFEILQEAK 331 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~ 331 (713)
..|++++|...|....
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=7.8e-05 Score=63.57 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
.+..+...|.+.|++++|...|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3333333333444444444444333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=5.3e-05 Score=65.09 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (713)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 170 (713)
+...|..+...+...|++++|...++...+.. +.+..++..+...|...|++++|.+.|++..+.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455555666666666666666666655542 2345555556666666666666666666655543 224455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 005127 171 GCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~~ 191 (713)
+|.+.|++++|...|++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 566666666666666555543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.5e-05 Score=69.19 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=85.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCCCh--hH
Q 005127 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 392 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 392 (713)
..|++++|...+....+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+... |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4566777777777766654 3456777788888888888888888888776543 3456677777777 7778887 88
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 393 TMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 393 A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
|+..|++..+. .| +...+..+..++...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888774 34 4667777778888888888888888888874
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.8e-05 Score=69.15 Aligned_cols=94 Identities=9% Similarity=-0.085 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC 419 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 419 (713)
.+..+...|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|++.|++..+. .| +...|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHH
Confidence 33444444444455555555554444332 223444444555555555555555555554442 23 234444444455
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 005127 420 ERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 420 ~~~g~~~~a~~~~~~m~~ 437 (713)
...|++++|...|++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-05 Score=73.78 Aligned_cols=98 Identities=18% Similarity=0.069 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC--
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-- 160 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-- 160 (713)
..+++.+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.+.|++..+. +-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344455555555555555555555554431 111 12334555555566666666666665554432 1011
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
...++..+...+...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12334455555555566666655555543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.05 E-value=4e-05 Score=70.15 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 005127 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG-CAKAGQV--AKA 181 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~~A 181 (713)
.|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 345555555555554443 3344555555555555555555555555555442 1244455555555 4455555 555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 005127 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 182 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (713)
...|++..... +.+...+..+...|...|++++|...|.+...
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555442 22344555555555555666666655555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00013 Score=74.69 Aligned_cols=87 Identities=10% Similarity=-0.093 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
.+|..+..+|.+.|++++|+..|++..+.... +...+..+..+|...|++++|...|+...+.. +.+..++..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45555555555555555555555555554322 44455555555555555555555555555442 22344555555555
Q ss_pred HhcCCHHHH
Q 005127 350 SNAKNWQKA 358 (713)
Q Consensus 350 ~~~g~~~~A 358 (713)
.+.|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00013 Score=74.77 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (713)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 348 (713)
...|..+...|.+.|++++|+..|++.......... . ..+.+..+- +....+|..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------------~-~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS------------F-SNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC------------C-CSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc------------C-ChHHHHHHH--------HHHHHHHHHHHHH
Confidence 345666667777777777777777776654322110 0 000111000 0013566667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 005127 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEV 427 (713)
Q Consensus 349 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 427 (713)
|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+..++.+.|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766543 335667777777777777777777777777663 34 45566666677777777777
Q ss_pred H-HHHHHHHHH
Q 005127 428 G-LMLLSQAKE 437 (713)
Q Consensus 428 a-~~~~~~m~~ 437 (713)
+ ...++.|..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 6 445555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00033 Score=58.26 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (713)
..|..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555555666666666666666665543 3345555666666666666666666666665543 22455555566666
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 005127 173 AKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~ 191 (713)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666665544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.5e-05 Score=67.10 Aligned_cols=98 Identities=9% Similarity=-0.103 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 005127 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILL 416 (713)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 416 (713)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|++.|++.... .| +...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHH
Confidence 45566777788888889999988888887653 446778888888888899999999999888774 34 556777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 005127 417 VACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.++...|++++|...|+...+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888899999999999888764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=4.1e-05 Score=67.97 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=7.4
Q ss_pred HHHHHHhCCChhHHHHHHHH
Q 005127 380 LITALCDGDQLPKTMEVLSD 399 (713)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~ 399 (713)
+..+|...|++++|++.|++
T Consensus 95 lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00042 Score=57.62 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 342 YSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
+..+..+|.+.|++++|.+.|+..
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.006 Score=61.35 Aligned_cols=181 Identities=12% Similarity=0.028 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 005127 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEI 326 (713)
Q Consensus 250 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~a~~~ 326 (713)
++++..+++.+...+ +-+..+|+.-...+.+.+ .+++++.+++.+.+.... |...|+.-.-++...|. .+++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345555555555443 334555555554555555 255666666666655444 55555555545555555 4566666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-----
Q 005127 327 LQEAKNQGISVGIISYSSLMGACSNA--------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG----- 387 (713)
Q Consensus 327 ~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~----- 387 (713)
+..+.+.. +-|...|+.....+.+. +.++++.+.+....... +-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 66665554 33455555444444433 34677777777776543 44667777655555544
Q ss_pred ------CChhHHHHHHHHHHHCCCCCCHHHHHH--HH---HHHHhcCCHHHHHHHHHHHHH
Q 005127 388 ------DQLPKTMEVLSDMKSLGLCPNTITYSI--LL---VACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 388 ------g~~~~A~~l~~~m~~~g~~p~~~t~~~--ll---~a~~~~g~~~~a~~~~~~m~~ 437 (713)
+.++++++.++++.+ +.||. .|.. ++ .+....|..++....+.++++
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 457788888888887 35754 2322 11 122235666677777777766
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00024 Score=60.55 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=33.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH
Q 005127 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 392 (713)
.+.+.|++++|...|....+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|...|++++
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 90 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 90 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHH
Confidence 3333344444444443333322 1223334444444444444444444444433321 1223334444444444444444
Q ss_pred HHHHHHHHH
Q 005127 393 TMEVLSDMK 401 (713)
Q Consensus 393 A~~l~~~m~ 401 (713)
|++.|++..
T Consensus 91 A~~~~~~al 99 (126)
T 3upv_A 91 ALETLDAAR 99 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00026 Score=60.35 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (713)
..|..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555566666677777777776666653 3355666666666666777777777776666653 22455666666666
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 005127 173 AKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~ 191 (713)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666766666666666543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00015 Score=62.28 Aligned_cols=105 Identities=11% Similarity=0.197 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----HHHHH
Q 005127 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYS 413 (713)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~ 413 (713)
..+..+...|.+.|++++|+..|++..+.. +.+...|+.+..+|.+.|++++|++.|++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566667777777777777777766542 3346667777777777777777777777765421 1111 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005127 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (713)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 447 (713)
.+..++...|++++|++.|++.++. .||..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 5666777777777777777776653 3554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00028 Score=60.50 Aligned_cols=103 Identities=14% Similarity=0.077 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYGA 167 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~ 167 (713)
++..+...+.+.|++++|+..|++.++.. +.+..+|+.+..+|.+.|++++|++.|++..+... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666677777777777777766653 33566666777777777777777777776654321 111 124555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005127 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (713)
Q Consensus 168 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 199 (713)
+..+|...|++++|++.|++.... .||..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 666666666777777766666543 344443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00017 Score=76.54 Aligned_cols=147 Identities=12% Similarity=-0.019 Sum_probs=73.8
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhC
Q 005127 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (713)
Q Consensus 26 ~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (713)
...+--...+++.|++++|++.|.++.+......+..... .......+..+ .++..+...|...
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~--------------~al~~l~~~y~~~ 68 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGA--SVDDKRRNEQE--------------TSILELGQLYVTM 68 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSS--SBCSHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHH--HHHHHHhhhHH--------------HHHHHHHHHHHHC
Confidence 4455567788999999999999999988653211110000 00000111111 1345667777777
Q ss_pred CChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHc
Q 005127 106 KDSEGAFQVLRLVQEAG-LKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVN----AGIEPN-VHTYGALIDGCAKA 175 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g-~~pd~~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~ 175 (713)
|++++|.+.+..+...- -.++.. +.+.+-..+...|+.+.|.+++..... .+..+. ..++..+...|...
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 77777777776654321 111111 122222233334556666666555432 111111 23444555555555
Q ss_pred CCHHHHHHHHHHH
Q 005127 176 GQVAKAFGAYGIM 188 (713)
Q Consensus 176 g~~~~A~~l~~~m 188 (713)
|++++|..++.+.
T Consensus 149 g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 149 KQYKDSLALINDL 161 (434)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHH
Confidence 5555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00021 Score=60.84 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 166 (713)
..|..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...|++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455666666777777777777777776654 34566666777777777777777777777665421 111 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005127 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (713)
Q Consensus 167 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 203 (713)
.+...|.+.|++++|...|++..+. .|+...+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 6666777777777777777766654 3444444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00048 Score=59.47 Aligned_cols=98 Identities=8% Similarity=-0.063 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (713)
.+...|..+...+...|++++|...|....+.. +.+...+..+..++...|++++|...|+...+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345555555555666666666666666555543 3345555555555555666666666665555543 22445555555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 005127 170 DGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~ 189 (713)
.+|...|++++|+..|.+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 55555555555555555554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0002 Score=59.13 Aligned_cols=94 Identities=12% Similarity=0.033 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 005127 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP--DRVVFNALITAC 207 (713)
Q Consensus 130 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~~~~~li~~~ 207 (713)
+..+...+...|++++|...|++..+.. +.+..+|..+...|...|++++|+..|++..+.. +. +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3444444555555555555555554432 2234445555555555555555555555555442 22 345555555555
Q ss_pred Hhc-CCHHHHHHHHHHhhh
Q 005127 208 GQS-GAVDRAFDVLAEMNA 225 (713)
Q Consensus 208 ~~~-g~~~~A~~~~~~m~~ 225 (713)
... |++++|.+.+.+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 555 555555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00023 Score=62.34 Aligned_cols=95 Identities=8% Similarity=-0.017 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (713)
.+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|...|+...... +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 33444445555555555555555555543 3344555555555555555555555555555543 223444555555555
Q ss_pred HcCCHHHHHHHHHHHHh
Q 005127 174 KAGQVAKAFGAYGIMRS 190 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~ 190 (713)
..|++++|...|++...
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00055 Score=61.54 Aligned_cols=98 Identities=13% Similarity=-0.014 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 313 (713)
...+..+...|.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3344555555556666666666666555543 334555666666666666666666666665554332 45555555666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 005127 314 AGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~ 333 (713)
|...|++++|...|.+..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666655543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00028 Score=60.06 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 330 (713)
|..+...+...|++++|...|++....... +...+..+...+...|++++|...+..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333334444444444444444444333211 2333333333444444444444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00029 Score=58.03 Aligned_cols=98 Identities=9% Similarity=0.064 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALI 169 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li 169 (713)
...|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|.+.|++..+.. +. +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3445555556666666666666666665543 3345556666666666666666666666665542 22 355566666
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhC
Q 005127 170 DGCAKA-GQVAKAFGAYGIMRSK 191 (713)
Q Consensus 170 ~~~~~~-g~~~~A~~l~~~m~~~ 191 (713)
..|.+. |++++|.+.|++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00071 Score=60.78 Aligned_cols=98 Identities=19% Similarity=0.092 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 005127 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILL 416 (713)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 416 (713)
+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+. .| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45677788888889999999999998887653 346788888999999999999999999998875 45 577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 005127 417 VACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.++...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999988874
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00049 Score=64.14 Aligned_cols=27 Identities=11% Similarity=-0.065 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
.+..+...+.+.|++++|+..|++...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555556666666666665554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00096 Score=58.21 Aligned_cols=95 Identities=8% Similarity=-0.027 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 005127 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (713)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 273 (713)
..+..+...+...|++++|.+.|++.... .|+ ...+..+...|...|++++|...++...+.. +.+...|.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 33444444444444444444444444321 222 2333334444444444444444444443332 22334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 274 IAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 274 ~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
.+..+|...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0011 Score=57.82 Aligned_cols=99 Identities=12% Similarity=-0.003 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 165 (713)
.+...+..+...+...|++++|...|+...+. .|+ ...+..+..+|...|++++|.+.|++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45667777777888888888888888887765 344 5667777777788888888888888777653 2356677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 166 GALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 166 ~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
..+..+|...|++++|...|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777778888888888888777665
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00068 Score=58.47 Aligned_cols=93 Identities=14% Similarity=-0.067 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 315 (713)
.+..+...+...|++++|...|+.....+ +.+...|..+..+|...|++++|...|++..+.... +...+..+..+|.
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 88 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 33444444444444444444444443332 223344444444444444444444444444333221 2333333444444
Q ss_pred hcCCHHHHHHHHHHH
Q 005127 316 HAGKVEAAFEILQEA 330 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m 330 (713)
..|++++|...|...
T Consensus 89 ~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 89 EMESYDEAIANLQRA 103 (137)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 444444444444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00042 Score=60.66 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=40.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005127 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 319 (713)
+...+.+.|++++|...|+.....+ +.+...|..+..+|.+.|++++|+..|++....... +...+..+..+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence 3344444444444444444444433 233444444444444444444444444444443322 23334444444444444
Q ss_pred HHHHHHHHHHHH
Q 005127 320 VEAAFEILQEAK 331 (713)
Q Consensus 320 ~~~a~~~~~~m~ 331 (713)
+++|...|+...
T Consensus 102 ~~~A~~~~~~al 113 (142)
T 2xcb_A 102 LDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00048 Score=64.17 Aligned_cols=88 Identities=17% Similarity=-0.009 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
.+|..+..+|.+.|++++|+..+++....... +...+..+..+|...|++++|...|+...+.. +.+..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 45555555666666666666666665554322 44555555555555666666666655555442 22344455555555
Q ss_pred HhcCCHHHHH
Q 005127 350 SNAKNWQKAL 359 (713)
Q Consensus 350 ~~~g~~~~A~ 359 (713)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0016 Score=68.90 Aligned_cols=165 Identities=8% Similarity=-0.037 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-CHH
Q 005127 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKY----NIKG-TPE 270 (713)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~ 270 (713)
+..|...|...|++++|.+.+..+......+ ++. .+.+.+-..+...|+++.|..++...... +..+ -..
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4445556666666666666655543311011 111 11111222223345555555555544321 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--H
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKK--GV--IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVG--I 339 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~--~ 339 (713)
++..+...|...|++++|..++++.... +. .| ...++..++..|...|++++|..++...... +.++. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 4555666666666666666666654432 11 11 1234555555555666666666555554321 11111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 340 ISYSSLMGACSNAKNWQKALELYEHM 365 (713)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~l~~~m 365 (713)
..+..+...+...|++++|...|.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23444444455555555555555444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00058 Score=57.91 Aligned_cols=93 Identities=10% Similarity=-0.057 Sum_probs=53.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005127 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (713)
Q Consensus 97 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (713)
.+...+.+.|++++|...|+...+.. +.+...+..+..++...|++++|+..|++..+... .+...+..+..+|.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 34445555666666666666665543 33455555666666666666666666666655431 24555556666666666
Q ss_pred CHHHHHHHHHHHHhC
Q 005127 177 QVAKAFGAYGIMRSK 191 (713)
Q Consensus 177 ~~~~A~~l~~~m~~~ 191 (713)
++++|+..|++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666665543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00073 Score=57.29 Aligned_cols=90 Identities=10% Similarity=-0.031 Sum_probs=42.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005127 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 319 (713)
+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3344445555555555555554443 334444445555555555555555555554444322 33344444444444444
Q ss_pred HHHHHHHHHHHH
Q 005127 320 VEAAFEILQEAK 331 (713)
Q Consensus 320 ~~~a~~~~~~m~ 331 (713)
+++|...++...
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00058 Score=60.47 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHH
Q 005127 341 SYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTI 410 (713)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ 410 (713)
++..+...|...|++++|...|++..+..- .++ ...+..+...|...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 555566666666666666666666543100 011 345666667777778888887777776532 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
++..+...+...|++++|...+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566667778888888888888877664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00064 Score=60.18 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 237 IGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
+..+...|...|++++|...++...+.... ++ ..++..+...|...|++++|...+++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444445555555555555443322100 00 1244455555555555555555555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00081 Score=72.36 Aligned_cols=117 Identities=12% Similarity=-0.029 Sum_probs=56.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 323 (713)
+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|+..+++..+.... +...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 344455555555555554443 334455555555555555555555555555554332 444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 005127 324 FEILQEAKNQGISVGIISYSSLMGA--CSNAKNWQKALELYE 363 (713)
Q Consensus 324 ~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~l~~ 363 (713)
.+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555432 1112223333333 555566666666555
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0045 Score=52.47 Aligned_cols=62 Identities=6% Similarity=-0.101 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
.+..+..+|.+.|++++|...|+...+.. +.+ ..++..+..+|.+.|++++|...|+++...
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33334444444444444444444444432 112 334444444555555555555555554443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0036 Score=53.10 Aligned_cols=91 Identities=10% Similarity=-0.071 Sum_probs=50.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 005127 99 MSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGC 172 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~ 172 (713)
...+...|++++|...|+.+.+... .+. ..+..+..++...|++++|...|+...+.... + ..++..+..+|
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 3445556666666666666655431 122 34555556666666666666666666554211 2 34455555566
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 005127 173 AKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~ 191 (713)
.+.|++++|...|+++...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00047 Score=74.19 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=89.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005127 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (713)
Q Consensus 275 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 354 (713)
+...+.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|...+++..+.. +.+..++..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 334566788999999999988876443 57888888888999999999999999888874 4467788888889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhCCChhHHHHHHH
Q 005127 355 WQKALELYEHMKSIKLKPTVSTMNALITA--LCDGDQLPKTMEVLS 398 (713)
Q Consensus 355 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~ 398 (713)
+++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998887652 2233445555444 777888889988887
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0019 Score=57.82 Aligned_cols=61 Identities=10% Similarity=-0.119 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
..|..+..+|.+.|++++|+..+++.++. .| +...|..+..++...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34444444555555555555555554442 22 344444555555555555555555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0024 Score=68.34 Aligned_cols=123 Identities=7% Similarity=-0.068 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 157 (713)
...|..+...+.+.|++++|...|++.++...... ..+|..+..+|.+.|++++|+..|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566666777777777777777777766421111 3445555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (713)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 216 (713)
+.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2244455555555555555555555555554432 12233444444444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0024 Score=68.30 Aligned_cols=88 Identities=9% Similarity=-0.065 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (713)
Q Consensus 305 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 384 (713)
..|..+..+|.+.|++++|+..+..+.+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...+..+...+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555554443 2234455555555555555555555555555432 12233455555555
Q ss_pred HhCCChhHHH
Q 005127 385 CDGDQLPKTM 394 (713)
Q Consensus 385 ~~~g~~~~A~ 394 (713)
.+.++.++|.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0003 Score=59.23 Aligned_cols=84 Identities=12% Similarity=-0.080 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005127 106 KDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (713)
|++++|+..|++.++.+ -+.+..++..+..+|...|++++|.+.|++..+... -+..++..+..+|.+.|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555555432 111233444455555555555555555555544421 134444445555555555555555
Q ss_pred HHHHHHh
Q 005127 184 AYGIMRS 190 (713)
Q Consensus 184 l~~~m~~ 190 (713)
.|++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0023 Score=66.22 Aligned_cols=119 Identities=11% Similarity=0.029 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005127 237 IGALMKACANAGQVDRAREVYKMIHKYN---------------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~---------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 301 (713)
+..+...+.+.|++++|...|+...+.. -+.+..+|..+..+|.+.|++++|+..+++..+....
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 4444555556666666666555544310 0112234445555555555555555555555544322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005127 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (713)
Q Consensus 302 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 357 (713)
+...+..+..+|...|++++|...|+...+.. +.+...+..+...+.+.++.++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555444432 1233344444444444444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0029 Score=56.51 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEA-------GL----------KADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~----------~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 155 (713)
..+......+.+.|++++|+..|...++. .- +.+..+|..+..+|.+.|++++|+..++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556666777778888888777776653 00 11234566666666666666666666666666
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
.. +.+...|..+..+|...|++++|...|++....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 53 234556666666666666666666666666554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0025 Score=65.90 Aligned_cols=137 Identities=9% Similarity=-0.061 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (713)
.|..+...+.+.|++++|+..|++.++.- ++. ......+.+.+ .. +.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------LQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------GH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------HH-HHHHHHHHHHHHHHH
Confidence 45666667777777777777777666410 000 00000000000 00 112344555555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005127 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A 253 (713)
+.|++++|+..+++..+.. +.+...|..+..+|...|++++|.+.|++..... +.+...+..+..++.+.++.+++
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555442 2234455555555555555555555555554321 12334444444455555554444
Q ss_pred H
Q 005127 254 R 254 (713)
Q Consensus 254 ~ 254 (713)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00056 Score=57.51 Aligned_cols=60 Identities=12% Similarity=0.016 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
++..+..+|.+.|++++|...|+...+.+ +.+..++..+..+|.+.|++++|+..|++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444444444333 2233444444444444444444444444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.015 Score=63.71 Aligned_cols=131 Identities=7% Similarity=0.010 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHH----------HHHHHHHhhhCC---CCCHHHHHHHHHHHHhCC
Q 005127 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (713)
Q Consensus 40 ~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 106 (713)
.-++|++.++++...+ |........-..+....++ +++|+++++.+. +.+..+|+.-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 3456778888777766 5554443333333333333 555555555432 344555555555555555
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005127 107 --DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 107 --~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
+++++++.++++.+.. +-+..+|+.-..++.+.| .++++++.++++.+..+ .|..+|+.....+.+
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHh
Confidence 4455555555555543 334445555544455555 45555555555554432 244555544444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0058 Score=53.02 Aligned_cols=110 Identities=15% Similarity=0.037 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 005127 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKAL 359 (713)
Q Consensus 284 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 359 (713)
++++|++.|++..+.|. |+.. +...|...+.+++|.+.|....+.| +...+..|-.+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34455555555554442 2222 3333444444455555555555443 34444455555544 45555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCC
Q 005127 360 ELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLG 404 (713)
Q Consensus 360 ~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 404 (713)
+.|++..+. -+...+..|-..|.. .++.++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555555443 234444444444444 445555555555544443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.041 Score=60.24 Aligned_cols=172 Identities=6% Similarity=-0.051 Sum_probs=108.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005127 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (713)
...++|++.++.+.+.. +-+..+|+.--.++...++ ++++++.++.+.+.. +.+..+|+.-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34456777777777764 3345566665555555555 777888888877765 33667777777777777
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc-----
Q 005127 176 G--QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA----- 247 (713)
Q Consensus 176 g--~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~----- 247 (713)
+ +++++++.++++.+.. +-|..+|+.-...+.+.| .++++++.++++... -..|..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhccccc
Confidence 7 6688888888877764 446777777666666777 677777777776643 133556666655555543
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 005127 248 ---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (713)
Q Consensus 248 ---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 284 (713)
+.++++.+.++.....+ +.+..+|+-+-..+.+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33455666665555544 3345555555555555444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.002 Score=65.89 Aligned_cols=147 Identities=17% Similarity=0.082 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (713)
..|..+...+.+.|++++|...|+...+. .|+... +...++.+++...+ . ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 34566666777788888888888877764 333321 11112222221111 0 12455566666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHH-HHHcCCH
Q 005127 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKA-CANAGQV 250 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~~~~~ll~~-~~~~g~~ 250 (713)
.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|.+.... .|+ ...+..+... ....+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l----~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665542 234556666666666666666666666665432 232 2233333333 2233455
Q ss_pred HHHHHHHHHHHhc
Q 005127 251 DRAREVYKMIHKY 263 (713)
Q Consensus 251 ~~A~~~~~~m~~~ 263 (713)
+.+..+|..|...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 5566666655443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0016 Score=66.64 Aligned_cols=146 Identities=10% Similarity=-0.004 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
..+..+...+.+.|++++|+..|++..... |+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 446666777778888888888888876542 33221 122233333332221 13667777788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHH-HHhcCCHHH
Q 005127 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVA-CERKDDVEV 427 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a-~~~~g~~~~ 427 (713)
.+.|++++|...|++..+.. +.+...|..+..+|...|++++|++.|++..+ +.|+.. .+..+... ....+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777643 34567788888888888888888888887765 345433 33333333 233456667
Q ss_pred HHHHHHHHHH
Q 005127 428 GLMLLSQAKE 437 (713)
Q Consensus 428 a~~~~~~m~~ 437 (713)
+...|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7777777765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.01 Score=52.24 Aligned_cols=94 Identities=11% Similarity=-0.035 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCC
Q 005127 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKA------DC-----KLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GIE 159 (713)
Q Consensus 96 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------d~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~ 159 (713)
......+.+.|++++|+..|++.++..... +. ..|+.+..++.+.|++++|+..|++.++. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 344445566667777777776666543210 11 25566666666666666666666665543 012
Q ss_pred C-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 160 P-NVHTY----GALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 160 ~-~~~~~----~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
| +...| .....++...|++++|+..|++..
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 23344 455555555555555555555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.021 Score=49.37 Aligned_cols=106 Identities=13% Similarity=-0.041 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 005127 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFG 183 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 183 (713)
+++|+..|++..+.| .++.. |...|...+.+++|.++|++..+.| +...+..|-..|.. .+++++|+.
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 444444444444444 22221 3333434444444555555544432 34444444444444 444555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhh
Q 005127 184 AYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMN 224 (713)
Q Consensus 184 l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 224 (713)
+|++..+.| +...+..|-..|.. .++.++|.+.|.+..
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 555444443 33444444444444 444444444444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.012 Score=51.81 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
.|+.+..++.+.|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555555555444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00091 Score=55.11 Aligned_cols=62 Identities=8% Similarity=-0.053 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
.|..+...+...|++++|...|+...+.. +.+..++..+..++.+.|++++|.+.|++..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444444555555555555555554432 223444444555555555555555555554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0057 Score=65.44 Aligned_cols=89 Identities=9% Similarity=-0.030 Sum_probs=45.4
Q ss_pred HHHcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCCC-HHHHHH
Q 005127 172 CAKAGQVAKAFGAYGIMRSK---NVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAE----VHPVDPD-HITIGA 239 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~---g~~p----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~pd-~~~~~~ 239 (713)
+...|++++|+.++++..+. -+.| ...+++.|..+|...|++++|..++.+.... -..-.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566777777666655431 1111 1345666666666666666666666554321 0011222 234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 005127 240 LMKACANAGQVDRAREVYKMI 260 (713)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~m 260 (713)
|...|...|++++|..++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0057 Score=65.44 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=37.4
Q ss_pred HHcCCHHHHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHH
Q 005127 245 ANAGQVDRAREVYKMIHKY---NIKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK-----GV-IPD-EVFLSAL 310 (713)
Q Consensus 245 ~~~g~~~~A~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~t~~~l 310 (713)
...|++++|..++++..+. -+.+ ...+++.|...|...|++++|..++++.+.. |. .|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445555555555444321 1111 1234455555555555555555555544321 11 111 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 005127 311 IDFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m 330 (713)
...|...|++++|..++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 44444455555554444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0017 Score=53.44 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=22.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
+...+...|++++|...|....+.. +.+..++..+..+|.+.|++++|...|++..
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333334444444444444333332 1223334444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.018 Score=44.96 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
.+..+...+...|++++|...|+...+.. +.+..++..+...|.+.|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 33444444444555555555554444432 223444444444555555555555555544443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.016 Score=45.23 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005127 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
.|..+...+...|++++|...++...+.. +.+..++..+..++.+.|++++|.+.|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444445555555555555444432 223444444444455555555555555444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.01 Score=49.24 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
...+..+...|...|++++|...|+...+.+ +.+...|..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555555555444433 2334444444444444455555544444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.013 Score=48.58 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 111 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
|+..|+...+.. +.+...+..+...|...|++++|...|++..+.. +.+..+|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444332 2334455555555555555555555555555442 1234445555555555555555555555444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0057 Score=53.82 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (713)
Q Consensus 424 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 453 (713)
++++|.+.|++.++ +.|+...|.--+.+
T Consensus 106 ~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 106 NFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45555555555554 34555555444444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.011 Score=51.97 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005127 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-----------GQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (713)
Q Consensus 143 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 205 (713)
+++|+..|++.++... -+..+|..+..+|... |++++|+..|++..+. .|+...|...+.
T Consensus 62 ~~eAi~~le~AL~ldP-~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 62 IQEAITKFEEALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3466666666655532 2445566666666554 3666777777666654 455444444433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.14 Score=51.65 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005127 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (713)
Q Consensus 124 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 201 (713)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5677888888777777799999999999988874 78778878888888899999999999888776 56666654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.027 Score=45.41 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
...+..+...|.+.|++++|...|+...+.+ +.+...|..+..+|.+.|++++|...|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555555554443 2233445555555555555555555554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.036 Score=44.61 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 153 (713)
...|..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|.+.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444444444432 223334444444444444444444444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.13 Score=52.01 Aligned_cols=64 Identities=9% Similarity=-0.059 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 372 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
.+...|.++...+...|++++|+..++++...+ |+...|..+-..+.-.|+.++|.+.|++...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344455555444444455555555555555532 5544444444555555555555555555554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.32 Score=55.75 Aligned_cols=129 Identities=13% Similarity=0.059 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005127 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (713)
Q Consensus 131 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 210 (713)
..++..+.+.|..+.|.++.+.-. .-.......|+++.|+++.+.+ .+...|..|...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 455555666666666665442111 1123344566666666664433 2456666666666666
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005127 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (713)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 290 (713)
|+++.|.+.|..+.. |..+...|...|+.+...++-+.....|- ++....+|.+.|++++|++
T Consensus 695 ~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp TCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHH
Confidence 666666666665531 23344444455555554444444443331 2333334444555555555
Q ss_pred HHHH
Q 005127 291 VYDD 294 (713)
Q Consensus 291 l~~~ 294 (713)
++.+
T Consensus 758 ~~~~ 761 (814)
T 3mkq_A 758 LLIK 761 (814)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.26 Score=56.55 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=30.1
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
+...|++++|.++.+.+ .+...|..|...+.+.++++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 44566677766664333 255667777777777777777777776653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.33 Score=42.14 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 005127 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVG 428 (713)
Q Consensus 354 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a 428 (713)
.+..+++-|.+..+.+ .++..+...+..++++.. +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3456667777666655 367788878888888888 5668999998887754 35 234455566788999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 429 LMLLSQAKEDGVIPNLVMFKCIIGM 453 (713)
Q Consensus 429 ~~~~~~m~~~g~~p~~~~~~~li~~ 453 (713)
+++++.+.+ ++|+..--..|..+
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHHHHH
Confidence 999999888 57766555555444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.14 Score=53.79 Aligned_cols=61 Identities=8% Similarity=-0.065 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 376 TMNALITALCDGDQLPKTMEVLSDMKS-----LG-LCPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (713)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (713)
+++.|...|...|++++|+.++++... .| -.|+ ..+++.|...|...|++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344444444444444444444444321 11 1121 2334445555555555555555554443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.26 Score=51.70 Aligned_cols=60 Identities=22% Similarity=0.132 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKK-----GV-IPD-EVFLSALIDFAGHAGKVEAAFEILQEA 330 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m 330 (713)
+++.+...|...|++++|+.++++.+.. |. .|+ ..+++.|...|...|++++|..++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444444444444444444443321 11 111 133444555555555555555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.076 Score=55.70 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHH
Q 005127 317 AGKVEAAFEILQEAKNQ---GISV----GIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KPT-VSTMNALIT 382 (713)
Q Consensus 317 ~g~~~~a~~~~~~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~-~p~-~~~~~~li~ 382 (713)
.|++++|..++++..+. -+.| ...+++.|..+|...|++++|..++++..+ .|- -|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777665442 1111 135677777777777777777777776543 110 122 245666666
Q ss_pred HHHhCCChhHHHHHHHHHH
Q 005127 383 ALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~ 401 (713)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6777777777776666654
|
| >3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.08 Score=40.77 Aligned_cols=77 Identities=14% Similarity=0.247 Sum_probs=47.3
Q ss_pred eeccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccCCccceeccCCchhhhhhhhhhHHHHHHHHHhCCCCCCC
Q 005127 578 VVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGN 657 (713)
Q Consensus 578 ~~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 657 (713)
.+|+|++++..|.-.+...|++...+.......+.+. |++|.|.|+....+.++.+|.+.|++-+..|.
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~---------II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~-- 70 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLS---------VITGRGNHSQGGVARIKPAVIKYLISHSFRFS-- 70 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE---------EECCC---------CHHHHHHHHHHHTTCCEE--
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCceEEE---------EEECCCCCCCCCcchHHHHHHHHHHhCCCcee--
Confidence 4799999999887776566665544333323345443 45788877644444599999999999876664
Q ss_pred Ccc-ceEEe
Q 005127 658 GSY-GKIRI 665 (713)
Q Consensus 658 ~~~-g~~~~ 665 (713)
+.| |.|.+
T Consensus 71 e~n~G~l~V 79 (82)
T 3fau_A 71 EIKPGCLKV 79 (82)
T ss_dssp EEETTEEEE
T ss_pred eCCCEEEEE
Confidence 446 88876
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.12 Score=54.23 Aligned_cols=60 Identities=8% Similarity=-0.074 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKY-----N--IKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (713)
+++.|..+|...|++++|..++++..+. | .+....+++.|...|...|++++|+.+|++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4455555555555555555555444321 1 0001223444455555555555555554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.13 Score=40.80 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=24.0
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 137 CAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 137 ~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
+.+.|++++|.+.|++..+.. +.+.. .|..+..+|...|++++|+..|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334444444444444444432 11233 4444444444444455554444444433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.25 Score=39.01 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=27.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 243 ACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 243 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
.+.+.|++++|...|+...+.. +.+.. .|..+..+|...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555554433 22334 4555555555555555555555555444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.93 E-value=1.4 Score=39.24 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=22.5
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005127 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (713)
.+.|+++.|.++.+++ -+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 13445555555555555555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.90 E-value=2.5 Score=35.44 Aligned_cols=138 Identities=15% Similarity=0.105 Sum_probs=73.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005127 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A 253 (713)
-.|.+++..++..+..+.. +..-||.+|--....-+-+-..++++.+-.. .|. ..+|++...
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-----FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-----FDL----------DKCQNLKSV 80 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-----SCG----------GGCSCTHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-----cCc----------HhhhcHHHH
Confidence 3566666677766665432 4555666666666666666666666665331 111 122333333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 254 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
...+-.+-. +.......++.+...|+-++-.+++.++.. +..|+......+..||.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 222222211 113344455556666666666666666433 23445566666666666666666666666666666
Q ss_pred CC
Q 005127 334 GI 335 (713)
Q Consensus 334 g~ 335 (713)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 54
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.21 E-value=0.83 Score=39.56 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChhHHH
Q 005127 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTM 394 (713)
Q Consensus 320 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 394 (713)
+..+.+-|.+....+. ++..+...+..++++.+ +++++..+|+...+.. .| +...+-.|.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555553 56677777777777777 5567777777776643 23 2445555666778888888888
Q ss_pred HHHHHHHHCCCCCCH
Q 005127 395 EVLSDMKSLGLCPNT 409 (713)
Q Consensus 395 ~l~~~m~~~g~~p~~ 409 (713)
+.++.+.+ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 88888777 46744
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.75 Score=36.21 Aligned_cols=64 Identities=6% Similarity=-0.043 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 234 HITIGALMKACANAGQ---VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 234 ~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
...+..+..++...++ .++|..+|++..+.+ +.++.....+...+.+.|++++|+..|+++.+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3344444444433332 455555555555544 444555555555555666666666666665554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.95 E-value=4.7 Score=35.79 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=24.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005127 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 295 (713)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34555555555554443 12345555555555555555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.58 E-value=1.5 Score=34.42 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 125 ADCKLYTTLITTCAKSGK---VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 125 pd~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
.|...+..+..++...++ .++|..+|++..+.. +-+..+...+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555555543333 466666666665553 224555555556666666666666666666554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.25 E-value=4.5 Score=33.90 Aligned_cols=63 Identities=16% Similarity=0.053 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005127 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 369 (713)
.+...++.....|+.++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344445555555665555555555433 224555555555666666666666666665555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.87 E-value=1.3 Score=35.59 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 340 ISYSSLMGACSNAKNWQKALELYEHMKSIK------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
.-+..|...+.+.|+++.|...|+...+.- -.+....+..|..+|.+.|++++|+..+++..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445555555555555555555443210 012234445555555555555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.55 E-value=1.7 Score=34.88 Aligned_cols=62 Identities=10% Similarity=-0.094 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAG------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 190 (713)
-+..|...+...+++..|..+|+...+.- -.+...++..|..+|.+.|+++.|+..+++..+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33445555555555555555555544320 012344455555555555555555555555544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.16 E-value=9.6 Score=39.82 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=86.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCC----HHH
Q 005127 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEV 271 (713)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~ 271 (713)
..|...|-..|++.+|.+++.++..+..+..+. ...+...+..|...+++..|..++..+... ...++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 456677777888888888887776543332222 234555667788888888888887765321 11122 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 272 YTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALID----FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (713)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~----~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 346 (713)
|..++..+...+++.+|...|.+.... ...-|...+..++. ...-.+....-..+.........-++...|..|+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 566677777788888887777766432 11112222221111 1111111111112222222222234566777777
Q ss_pred HHHHhc--CCHHHHHHHHHH
Q 005127 347 GACSNA--KNWQKALELYEH 364 (713)
Q Consensus 347 ~~~~~~--g~~~~A~~l~~~ 364 (713)
.+|... .+++...+.|..
T Consensus 301 k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHhchHhhhHHHHHHHHH
Confidence 777654 345555555544
|
| >2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=91.12 E-value=1 Score=35.70 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=54.5
Q ss_pred CeeeccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccCCccceeccCCchhhhhhhhhhHHHHHHHHHhCCCCC
Q 005127 576 PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQ 655 (713)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~ 655 (713)
...+|++++++..|.-.+...|+...........++.+ .|++|.|.++....+.++.+|.+.|++.+..|.
T Consensus 8 ~~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v---------~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~ 78 (96)
T 2d9i_A 8 QNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYL---------SVITGRGNHSQGGVARIKPAVIKYLISHSFRFS 78 (96)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEE---------EEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEE
T ss_pred CCeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEE---------EEEECcCCCCCCCcchHHHHHHHHHhhCCCccc
Confidence 45899999999999877766777665433322234544 345788888754445699999999999877663
Q ss_pred CCCcc-ceEEe
Q 005127 656 GNGSY-GKIRI 665 (713)
Q Consensus 656 ~~~~~-g~~~~ 665 (713)
+-+ |.+.+
T Consensus 79 --egg~Ga~~V 87 (96)
T 2d9i_A 79 --EIKPGCLKV 87 (96)
T ss_dssp --CCSTTCEEE
T ss_pred --cCCCcEEEE
Confidence 223 77765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=89.96 E-value=2.2 Score=41.33 Aligned_cols=93 Identities=11% Similarity=0.057 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCH
Q 005127 108 SEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAK-----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-GQV 178 (713)
Q Consensus 108 ~~~A~~l~~~m~~~g~~pd---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~ 178 (713)
...|...+++.++. .|+ ...|..|...|.+ .|+.++|.+.|++..+....-+..++....+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666664 444 5577788888887 388888888888888764333467777777777774 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHH
Q 005127 179 AKAFGAYGIMRSKNVK--PDRVVFNA 202 (713)
Q Consensus 179 ~~A~~l~~~m~~~g~~--pd~~~~~~ 202 (713)
+.|.+.+++....... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888777555 55444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=89.32 E-value=16 Score=35.26 Aligned_cols=94 Identities=13% Similarity=-0.006 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 005127 250 VDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVEA 322 (713)
Q Consensus 250 ~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~ 322 (713)
...|...+++..+.+-.- +...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 345555555555543110 245667777777763 77777777777776654322345555566666663 67777
Q ss_pred HHHHHHHHHHCCCC--CCHHHHH
Q 005127 323 AFEILQEAKNQGIS--VGIISYS 343 (713)
Q Consensus 323 a~~~~~~m~~~g~~--~~~~~~~ 343 (713)
+.+.+++....... |+....|
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 77777777666544 4443333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.57 E-value=3.8 Score=35.15 Aligned_cols=106 Identities=10% Similarity=-0.010 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHHcCChhHHHHHHHHHH
Q 005127 88 PNPTLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCK----LYTTLIT---TCAKSGKVDAMFEVFHEMV 154 (713)
Q Consensus 88 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~~----~~~~li~---~~~~~g~~~~A~~~~~~m~ 154 (713)
.+.|..+|-..+...-+.|+. +...++|++.... ++|+.. .|-.|-- .+...+++++|.++|+.+.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356778888888888888888 8888888888764 455421 1111111 1123478899999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005127 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (713)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 195 (713)
+. .+.=...|-.....-.+.|++..|.+++.+....+..|
T Consensus 88 ~~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 AN-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HH-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HH-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 65 23337777777777788899999999999988877554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.81 E-value=3 Score=35.75 Aligned_cols=51 Identities=14% Similarity=0.025 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005127 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (713)
Q Consensus 318 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 369 (713)
++.++|.++|+.+.+.+-.- ..+|......-.+.|++..|++++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554432222 4444444444455555555555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=87.71 E-value=3.6 Score=34.23 Aligned_cols=90 Identities=14% Similarity=0.045 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 005127 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK---TMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEV 427 (713)
Q Consensus 353 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~ 427 (713)
..+..+.+-|......| .++..+--.+..++.+.....+ ++.++++....+ .| +....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 33445555555554433 2566665566667776666555 777777766543 23 22233345567778888888
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q 005127 428 GLMLLSQAKEDGVIPNLVM 446 (713)
Q Consensus 428 a~~~~~~m~~~g~~p~~~~ 446 (713)
|++.++.+++ ++|+..-
T Consensus 93 A~~~~~~lL~--~eP~n~Q 109 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHH--hCCCCHH
Confidence 8888877776 4555433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=87.43 E-value=6.5 Score=32.65 Aligned_cols=87 Identities=10% Similarity=0.024 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChhHH
Q 005127 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKT 393 (713)
Q Consensus 319 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 393 (713)
.+..+.+-|......|. ++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555544443 566666666667777766554 777777776543 12 223344456678888888888
Q ss_pred HHHHHHHHHCCCCCCH
Q 005127 394 MEVLSDMKSLGLCPNT 409 (713)
Q Consensus 394 ~~l~~~m~~~g~~p~~ 409 (713)
.+.++.+.+ +.|+.
T Consensus 94 ~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHH--hCCCC
Confidence 888888777 46643
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.24 E-value=34 Score=35.54 Aligned_cols=149 Identities=12% Similarity=0.121 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHH
Q 005127 308 SALIDFAGHAGKVEAAFEILQEAKNQ--GISVG---IISYSSLMGACSNAKNWQKALELYEHMKS----IKLKPT--VST 376 (713)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p~--~~~ 376 (713)
..|...|...|++.+|..++..+... +.... ...+...+..|...+++..|..++..+.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556666667777777776665432 21111 34556667777777888887777776532 111222 234
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 377 MNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYS----ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 451 (713)
+..++..+...+++.+|.+.|.+..+. ...-|...+. .++.+..-++....-..+.....+....++...|..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 566666677778888887777766431 1111222221 11112222222222222333333322335667778888
Q ss_pred HHHHh
Q 005127 452 GMCSR 456 (713)
Q Consensus 452 ~~~~r 456 (713)
.++..
T Consensus 301 k~f~~ 305 (445)
T 4b4t_P 301 KLFTT 305 (445)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.22 E-value=7.5 Score=30.64 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (713)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (713)
+.-+..+-++.+....+.|++....+.|.||.+.+++.-|.++|+-++.. +.+...+|..+++-+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELR 90 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHHh
Confidence 34467777778888889999999999999999999999999999988754 2233557888886543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.76 E-value=5.4 Score=44.50 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005127 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (713)
Q Consensus 349 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (713)
|...|+++.|.++-++....- +-+-.+|-.|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334455555555555544331 122445555555555555555555555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.33 E-value=6.4 Score=40.33 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISY 342 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~ 342 (713)
+...++..+...|++++|+..+..+.....- +...+..+|.++.+.|+..+|++.|+...+ .|+.|...+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445566666777777777777776655433 666777777777777777777777776543 3777776554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.00 E-value=17 Score=40.57 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=40.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
+.|...|+++.|+.+-++....- +.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34556788888888887776653 4557788888888888888888888877764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=80.58 E-value=7 Score=40.04 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFN 201 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~~~ 201 (713)
+...++..+...|+++++...+..+.... +.+...|..+|.+|.+.|+..+|++.|++... .|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34556777778888888888877776653 44777888888888888888888888887653 48888876643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.53 E-value=39 Score=40.04 Aligned_cols=88 Identities=9% Similarity=0.080 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005127 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (713)
Q Consensus 128 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 203 (713)
.-|..++..+-+.+.++.+.+.-....+....-+. ..|..+.+.+...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 44677777777777777777766665543222121 2577778888888888888888877776533 35667777
Q ss_pred HHHHHhcCCHHHHH
Q 005127 204 ITACGQSGAVDRAF 217 (713)
Q Consensus 204 i~~~~~~g~~~~A~ 217 (713)
+..+|..|..+.-.
T Consensus 978 V~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 978 VNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHhCCChhhhh
Confidence 77777777765544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.44 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.41 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.95 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.92 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.92 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.71 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.69 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.68 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.66 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.3 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.28 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.08 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.06 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.97 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.92 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.87 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.83 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.82 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.81 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.8 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.65 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.63 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.62 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.58 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.57 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.35 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.33 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.24 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.2 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.2 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.13 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.09 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.0 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.98 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.9 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.88 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.87 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.87 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.86 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.81 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.75 | |
| d2d9ia1 | 83 | Nedd4-binding protein 2 {Human (Homo sapiens) [Tax | 96.52 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.51 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.9 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.2 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.11 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.24 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.2 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.69 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.94 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.44 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.51 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.29 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.1e-18 Score=181.52 Aligned_cols=378 Identities=13% Similarity=0.052 Sum_probs=235.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChH
Q 005127 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (713)
Q Consensus 33 ~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (713)
+.+.+.|++++|++.|+++.+.. |.+...+..++.++...|++++|+..|+.+. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 45668899999999999888776 6666666666777777777777777776542 345567777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005127 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (713)
Q Consensus 110 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 189 (713)
+|+..+....+.. +.+..............+....+........... .................+....+...+....
T Consensus 85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 7777777776654 3344444444444555555555555555444433 2233444445555556666666666666665
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 005127 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (713)
Q Consensus 190 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 269 (713)
... +-+...+..+...+...|++++|...+.+..... +.+..++..+...+...|++++|...|+.....+ +.+.
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC---cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 442 3345566666666677777777777776665421 2234456666666777777777777776666554 3445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 349 (713)
..+..+...+.+.|++++|+..|++..+.... +..++..+..++...|+.++|...+....... +.+...+..+...|
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 56666666677777777777777766665433 45566666666666677777776666665543 44556666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 005127 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDD 424 (713)
Q Consensus 350 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 424 (713)
.+.|++++|...|++..+.. +.+..+|..+...|.+.|++++|++.|++..+ +.|+ ...|..+..++.+.||
T Consensus 316 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 66677777777666665432 22355566666666666667777666666665 3453 4455666555555543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=9.5e-18 Score=174.26 Aligned_cols=373 Identities=13% Similarity=0.076 Sum_probs=303.6
Q ss_pred HHHHHhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 005127 68 FNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (713)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 144 (713)
.....+.|++++|++.|+.+. +.+..++..+...+.+.|++++|...++.+.+.. +.+..++..+..+|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 344567789999999998753 4568889999999999999999999999998875 456788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005127 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (713)
Q Consensus 145 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (713)
+|.+.+....+.. ..+...+..........+....+........... .................+....+...+....
T Consensus 85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 9999999998875 3355555566666666666666666666555443 3344555566667777888888888888776
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005127 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (713)
Q Consensus 225 ~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 304 (713)
.. .+.+...+..+...+...|+++.|...++...+.+ +.+..+|..+...+...|++++|...|++....+.. +.
T Consensus 163 ~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 237 (388)
T d1w3ba_ 163 ET---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred cc---CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HH
Confidence 53 23346677888889999999999999999988765 557789999999999999999999999999887654 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005127 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (713)
Q Consensus 305 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 384 (713)
..+..+...+.+.|++++|...|++..+.. +-+..++..+...|.+.|++++|.+.|+...... +.+...+..+...|
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 788889999999999999999999998875 4567889999999999999999999999887653 56788899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 005127 385 CDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMC 454 (713)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~ 454 (713)
...|++++|++.|++..+. .| +..++..+..++...|++++|...|++.++ +.|+ ...|..|..+|
T Consensus 316 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 9999999999999998874 56 567788899999999999999999999987 4565 44555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=5.4e-11 Score=119.64 Aligned_cols=92 Identities=11% Similarity=-0.057 Sum_probs=71.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005127 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (713)
Q Consensus 98 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (713)
....+.+.|++++|...|+.+++.. +-+..+|..+..+|...|++++|...|++..+... -+...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 3445777888888888888888764 44577888888888888888888888888877642 356778888888888888
Q ss_pred HHHHHHHHHHHHhC
Q 005127 178 VAKAFGAYGIMRSK 191 (713)
Q Consensus 178 ~~~A~~l~~~m~~~ 191 (713)
+++|.+.+++....
T Consensus 103 ~~~A~~~~~~~~~~ 116 (323)
T d1fcha_ 103 QRQACEILRDWLRY 116 (323)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred ccccccchhhHHHh
Confidence 88888888887654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.6e-10 Score=116.12 Aligned_cols=242 Identities=12% Similarity=0.038 Sum_probs=127.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHhC
Q 005127 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASS 105 (713)
Q Consensus 29 ~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~ 105 (713)
...-..+.+.|++++|+..|+++.+.. |.+...+..++.++...|++++|+..|+.. .+.+...|..+...+...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccc
Confidence 333445779999999999999999876 555555555555555556666666555542 233445555555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005127 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (713)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 185 (713)
|++++|.+.++...... |+............. ..+.......+..+...+.+.+|...|
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 55555555555554431 111000000000000 000001111122233344455566666
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005127 186 GIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (713)
Q Consensus 186 ~~m~~~g-~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 264 (713)
.+..... -..+...+..+...+...|++++|...|++..... +.+..+|..+...|.+.|++++|.+.|+...+..
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc---cccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence 5554331 12345555566666666666666666666655421 2234455566666666666666666666665543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (713)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 297 (713)
+.+..+|..+..+|.+.|++++|+..|++..+
T Consensus 237 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 237 -PGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33455666666666666666666666666544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.95 E-value=1.3e-07 Score=93.58 Aligned_cols=186 Identities=15% Similarity=0.117 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005127 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (713)
Q Consensus 250 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 329 (713)
.++|..+|+...+...+.+...|...+..+...|+++.|..+|+++...........|...+..+.+.|..+.|.++|..
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455555554443333344455555555555555555555555555443332233455555555555555556666555
Q ss_pred HHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCC
Q 005127 330 AKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCP 407 (713)
Q Consensus 330 m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p 407 (713)
+.+.+. .+...|...... +...|+.+.|..+|+.+.+. .+.+...|...+..+.+.|+.++|..+|++..... ..|
T Consensus 160 al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 554432 222222222222 22345666666666666543 13345566666666666666666666666655432 233
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 408 N--TITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 408 ~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
+ ...|...+.--...|+.+.+..+++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 34555556555566666666666666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2.8e-07 Score=91.38 Aligned_cols=214 Identities=8% Similarity=0.038 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 171 (713)
..|+.+...+.+.+.+++|+++++.+++.. +-+..+|+....++...+ ++++|+..++...+.. +-+..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 456666666777777888888888877764 445667777777777765 4778888887777664 2367777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCC--
Q 005127 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-- 249 (713)
Q Consensus 172 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~-- 249 (713)
+.+.|++++|+..|.++.+.. +.+...|..+...+.+.|++++|++.|+.+.... +.+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~---p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC---CccHHHHHHHHHHHHHccccc
Confidence 778888888888888777653 4457777777777777788888888777776531 2345566666555555554
Q ss_pred ----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 005127 250 ----VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFA 314 (713)
Q Consensus 250 ----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~ 314 (713)
+++|...+....+.+ +.+...|+.+...+...+ .+++...++...+....+ +...+..++..|
T Consensus 198 ~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 456666676666655 445666666655544433 455666666555433222 334444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=1.2e-06 Score=87.61 Aligned_cols=267 Identities=11% Similarity=0.007 Sum_probs=152.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 005127 100 SVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGALID 170 (713)
Q Consensus 100 ~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~ 170 (713)
..+...|++++|+++++...+.....+ ..+++.+..+|...|++++|.+.|++..+... .++ ..++..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 445667777777777777766432111 23566667777777888888877777654210 111 234555666
Q ss_pred HHHHcCCHHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CCCCHHHHHHHH
Q 005127 171 GCAKAGQVAKAFGAYGIMRS----KNVKPD---RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGALM 241 (713)
Q Consensus 171 ~~~~~g~~~~A~~l~~~m~~----~g~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~pd~~~~~~ll 241 (713)
.+...|++..+...+.+... .+.... ...+..+...+...|+++.+...+......... ......++..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 67777887777777766542 111111 223445556677778888777777666542111 112233444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 005127 242 KACANAGQVDRAREVYKMIHKY--NIKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALID 312 (713)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~ 312 (713)
..+...++...+...+...... .... ....+..+...+...|+++.|...+.......... ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6666777777777666554332 1111 12234555666667777777777776654432221 2234455566
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 313 FAGHAGKVEAAFEILQEAKN----QGISVG-IISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
++...|++++|...++.+.. .+..|+ ..++..+...|.+.|++++|.+.|++..
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66777777777777666542 222222 3455666666777777777777766554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.92 E-value=2.1e-07 Score=92.15 Aligned_cols=185 Identities=9% Similarity=0.027 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005127 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (713)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 293 (713)
++|..+|++.... ..+.+...|...+..+.+.|+++.|..+|+.+.+........+|...+..+.+.|+.+.|.++|+
T Consensus 81 ~~a~~i~~ral~~--~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 81 DEAANIYERAIST--LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTT--TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4455555554432 11223334455555555555555555555555544322233455555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 005127 294 DMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LK 371 (713)
Q Consensus 294 ~m~~~g~~p~~~t~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~ 371 (713)
++.+.+... ...|..... -+...|+.+.|..+|+.+.+. .+.+...+...++.+.+.|+++.|+.+|++..+.. ..
T Consensus 159 ~al~~~~~~-~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCCc-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 555544322 122222221 122345555555555555554 23345555555555555555555655555554431 12
Q ss_pred CC--HHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005127 372 PT--VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (713)
Q Consensus 372 p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (713)
|+ ...|...+.--..+|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 33455555555555555555555555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=3.7e-07 Score=90.51 Aligned_cols=217 Identities=8% Similarity=-0.003 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005127 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (713)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 205 (713)
..+|+.+...+.+.+.+++|+++++++++.. +-+..+|+....++...| ++++|+..+++..+.. +-+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3466777777888899999999999999875 336778888888888876 5899999999987764 446888999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-
Q 005127 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD- 284 (713)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~- 284 (713)
.+.+.|++++|++.+..+... -+.+..+|..+...+.+.|++++|...|+.+.+.+ +.+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHhhccHHHHHHHHhhhhhh---hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcccc
Confidence 999999999999999998864 23457788889999999999999999999998876 5567788877776666555
Q ss_pred -----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 005127 285 -----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSN 351 (713)
Q Consensus 285 -----~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~ 351 (713)
+++|+..+.+..+.... +...|..+...+... ..+++.+.+....+.... .+...+..+...|..
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 57888888887776543 666666665555443 356677777666554322 345566666666643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=9.7e-07 Score=88.25 Aligned_cols=200 Identities=11% Similarity=-0.037 Sum_probs=120.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHH
Q 005127 238 GALMKACANAGQVDRAREVYKMIHK----YNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG----VIPDEVF 306 (713)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~m~~----~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t 306 (713)
..+...+...|++..+...+..... ..... ....+..+...+...|+++.+...+....... ......+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 3344455555666665555554322 11111 11234455566666777777777776655431 1222344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH
Q 005127 307 LSALIDFAGHAGKVEAAFEILQEAKNQ----GISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTM 377 (713)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~ 377 (713)
+......+...+....+...+...... +..+ ....+..+...+...|++++|...++...+..... ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 555555666677777777666654432 1111 12345566677788888888888888765432211 23456
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 378 NALITALCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
..+...|...|++++|.+.+++... .+..|+ ..++..+..++...|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677888888999999888887653 344453 34566777888899999999998887654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=1.4e-07 Score=90.60 Aligned_cols=198 Identities=10% Similarity=-0.050 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (713)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (713)
.+|..+...+.+.|++++|...|++.++.. +-+..+|+.+..+|.+.|++++|.+.|++..+... -+..++..+..+|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHH
Confidence 355566667777778888888877777654 44567777777788888888888888887777642 2456677777777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCC---
Q 005127 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ--- 249 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~--- 249 (713)
...|++++|+..|++..+.. +.+......+..++.+.+..+.+..+....... .++...++ ++..+.....
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~ 189 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS----DKEQWGWN-IVEFYLGNISEQT 189 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc----chhhhhhh-HHHHHHHHHHHHH
Confidence 77888888888887776653 234444433444444555444444444443332 11111221 1222211111
Q ss_pred -HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005127 250 -VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 250 -~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 299 (713)
.+.+...+....... +....+|..+...|...|++++|.+.|++.....
T Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 190 LMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 111111111111100 0112355566677777777777777777766553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=3.9e-07 Score=87.28 Aligned_cols=195 Identities=14% Similarity=0.010 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 315 (713)
++..+..+|.+.|++++|...|+...+.+ +.++.+|+.+..+|.+.|++++|+..|++..+.... +..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 44555566666777777777777666654 445666777777777777777777777776665433 4455666666677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----hh
Q 005127 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ----LP 391 (713)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~----~~ 391 (713)
..|++++|...+....+.. +.+......+...+.+.+..+.+..+....... .++...++ ++..+..... .+
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhh-HHHHHHHHHHHHHHHH
Confidence 7777777777777666553 223333333444444555544454444444432 12222222 1122211111 11
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 392 KTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (713)
Q Consensus 392 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (713)
.+...+..... ..|+ ..+|..+...+...|++++|...|+..+..
T Consensus 193 ~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 193 RLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 11111111111 1121 234555667777788888888888877763
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=6.2e-08 Score=97.26 Aligned_cols=246 Identities=5% Similarity=-0.077 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH----------HhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhCC
Q 005127 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVC----------KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (713)
Q Consensus 40 ~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 106 (713)
..++|+++++.+.+.+ |++...+.....++ ...+.+++|+.+|+... +.+...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence 3489999999998877 65544432222222 23345666666666432 345555665555555544
Q ss_pred C--hHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005127 107 D--SEGAFQVLRLVQEAGLKADCKLYT-TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (713)
Q Consensus 107 ~--~~~A~~l~~~m~~~g~~pd~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (713)
+ +++|...+..+.+.. +++...+. .+...+...+..+.|+..++.+.+... -+..+|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHH
Confidence 3 566666666666543 23344333 233444455666666666666655542 255566666666666666555544
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005127 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (713)
Q Consensus 184 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 263 (713)
.+...... .|+ ...+...+...+..+++...+....... +++...+..+...+...++.++|...+....+.
T Consensus 200 ~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 200 QGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR---AEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp CCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC---CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC---cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 43332221 010 1112222333444445555554443321 222333444444555555666666655555444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
+ +.+..+|..+...|...|++++|++.|++..+.
T Consensus 272 ~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 272 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp C-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred C-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3 223345555555555666666666666655554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.66 E-value=1.5e-07 Score=94.33 Aligned_cols=250 Identities=8% Similarity=-0.042 Sum_probs=114.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----------HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005127 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC----------AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (713)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~----------~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (713)
....++|+++++..++.. +-+...|+..-..+ ...|.+++|+..++...+.. +.+...|..+..++..
T Consensus 42 ~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 334467777777776643 22233343222221 22233566666666666543 2355556655555555
Q ss_pred cC--CHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 005127 175 AG--QVAKAFGAYGIMRSKNVKPDRVVFNAL-ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (713)
Q Consensus 175 ~g--~~~~A~~l~~~m~~~g~~pd~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~ 251 (713)
.+ ++++|+..+.++.... +++...+... ...+...+..++|++.++...... +-+...|+.+..++.+.|+++
T Consensus 120 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCC
T ss_pred hccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHH
Confidence 44 3666666666666542 2334444333 345555666666766666655431 234555666666666666665
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (713)
Q Consensus 252 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 331 (713)
+|...+....+.. .....+...+...+..+++...+......... +...+..+...+...++.++|...+....
T Consensus 196 ~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 196 DSGPQGRLPENVL-----LKELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CSSSCCSSCHHHH-----HHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHhH-----HHHHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5543332222110 00111122233334444444444444333221 22223333333344444444444444433
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005127 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 332 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
+.. +.+..++..+...|.+.|+.++|.+.|+...+
T Consensus 270 ~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 270 PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp TTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 332 11233444444444444444444444444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.30 E-value=1.9e-05 Score=76.66 Aligned_cols=238 Identities=12% Similarity=0.055 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-
Q 005127 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA- 121 (713)
Q Consensus 43 ~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~- 121 (713)
++-+++++..+.+. ....+...+. .....++++|..+|. .....|...+++++|...|.+..+.
T Consensus 3 ~~~~~l~~aek~~~--~~~~~~~~~~--~~~~~~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~ 67 (290)
T d1qqea_ 3 DPVELLKRAEKKGV--PSSGFMKLFS--GSDSYKFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQ 67 (290)
T ss_dssp CHHHHHHHHHHHSS--CCCTHHHHHS--CCSHHHHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC--cchhHHHHhc--CCccccHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45667777666552 1112212111 123456777776654 4466788889999999999877653
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHh-
Q 005127 122 ---GLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHTYGALIDGCAK-AGQVAKAFGAYGIMRS- 190 (713)
Q Consensus 122 ---g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~- 190 (713)
+-++ -..+|..+..+|.+.|++++|.+.++...+. |. .....++..+...|-. .|++++|+..|.+..+
T Consensus 68 ~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l 147 (290)
T d1qqea_ 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 1111 1357888888898999999998888876542 10 0113345555556644 5888888888877643
Q ss_pred ---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005127 191 ---KNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDH-ITIGALMKACANAGQVDRAREVYKMIHK 262 (713)
Q Consensus 191 ---~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---pd~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 262 (713)
.+.++. ..++..+...+...|++++|.+.|++......... ... ..+...+..+...|+++.|...|+...+
T Consensus 148 ~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 121111 23466677777788888888888877654311111 010 1123334455666777777777776655
Q ss_pred cCCCC-C---HHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 005127 263 YNIKG-T---PEVYTIAINCCSQ--TGDWEFACSVYDDM 295 (713)
Q Consensus 263 ~~~~~-~---~~~~~~li~~~~~--~g~~~~A~~l~~~m 295 (713)
..... + ......++.++-. .+.+++|+.-|+++
T Consensus 228 ~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 43211 1 1223445555443 23456666665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.9e-05 Score=70.14 Aligned_cols=122 Identities=15% Similarity=0.013 Sum_probs=97.5
Q ss_pred HHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005127 70 VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (713)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 149 (713)
.....|+++.|++.|..+.+++..+|..+..++...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|.+.
T Consensus 14 ~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKD 92 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHH
Confidence 34567889999999998888888889899999999999999999999998876 55688889999999999999999999
Q ss_pred HHHHHHCCC--------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005127 150 FHEMVNAGI--------------EPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (713)
Q Consensus 150 ~~~m~~~g~--------------~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 192 (713)
|++...... .++ ..++..+..+|.+.|++++|.+.|.......
T Consensus 93 ~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 93 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 988765311 011 2455566777888888888888888877653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.08 E-value=6.3e-05 Score=72.87 Aligned_cols=195 Identities=9% Similarity=0.046 Sum_probs=113.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q 005127 241 MKACANAGQVDRAREVYKMIHKY----NIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV-IPDEVFLSAL 310 (713)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~l 310 (713)
...|...+++++|...|.+..+. +-+ ....+|..+..+|.+.|++++|.+.+++.... |. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44577777788887777766442 111 11346777788888888888888888765432 11 0112344555
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----H-HHHH
Q 005127 311 IDFAGH-AGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-----V-STMN 378 (713)
Q Consensus 311 i~~~~~-~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-----~-~~~~ 378 (713)
...|.. .|++++|...+....+. +..+ ...++..+...|.+.|++++|...|++......... . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555543 58888888888766432 2111 134567777888888888888888887765421111 1 1233
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 005127 379 ALITALCDGDQLPKTMEVLSDMKSLGLC-PN---TITYSILLVACER--KDDVEVGLMLLSQA 435 (713)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~---~~t~~~ll~a~~~--~g~~~~a~~~~~~m 435 (713)
.++..+...|+++.|.+.|++..+.... ++ ......++.++.. .+.+++++..|+++
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4445566778888888888877653211 11 2234555555544 23466666666543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=0.00014 Score=65.32 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=54.5
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 005127 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (713)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 285 (713)
.+...|+++.|++.|.++. +|+..+|..+..+|.+.|++++|...|++..+.+ +.+...|..+..+|.+.|++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 3455666777766665432 3455566666666777777777777777666655 44566666677777777777
Q ss_pred HHHHHHHHHHHH
Q 005127 286 EFACSVYDDMTK 297 (713)
Q Consensus 286 ~~A~~l~~~m~~ 297 (713)
++|++.|++...
T Consensus 87 ~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 87 DLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776666554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.0002 Score=58.35 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=53.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005127 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (713)
...+.+.|++++|+..|...++.. +.+...|..+..+|.+.|++++|+..++...+.. +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 344555666666666666665553 3455556666666666666666666666666554 23555666666666666666
Q ss_pred HHHHHHHHHHHhC
Q 005127 179 AKAFGAYGIMRSK 191 (713)
Q Consensus 179 ~~A~~l~~~m~~~ 191 (713)
++|+..|++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00015 Score=59.19 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=36.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005127 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 323 (713)
+.+.|++++|...|+...+.+ +.+...|..+..+|.+.|++++|+..+....+.+.. +...|..+..++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHHH
Confidence 344444444444444444333 333344444444444444444444444444433322 333444444444444444444
Q ss_pred HHHHHHHHH
Q 005127 324 FEILQEAKN 332 (713)
Q Consensus 324 ~~~~~~m~~ 332 (713)
+..|+...+
T Consensus 91 ~~~~~~a~~ 99 (117)
T d1elwa_ 91 KRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.97 E-value=0.0075 Score=56.50 Aligned_cols=191 Identities=10% Similarity=-0.019 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005127 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (713)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 167 (713)
+..+..|...+.+.+++++|++.|++..+.| |...+..|...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455556666667777777777777777665 55555556666655 456777777777766654 3344444
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 005127 168 LIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239 (713)
Q Consensus 168 li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ 239 (713)
|...+.. ..+.+.|...++.....|. ......+...+.. ......+...+..... ..+...+..
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 147 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-----LNDGDGCTI 147 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-----TTCHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc-----ccccchhhh
Confidence 4444433 3566777777777766652 2222222222221 2335555555554433 234445555
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 005127 240 LMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKG 299 (713)
Q Consensus 240 ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 299 (713)
|...|.. ..+...+...++...+.+ +..+...+...|.. ..++++|+..|.+..+.|
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 212 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence 5555543 234445555555544433 23333333333332 334555555555554443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.00019 Score=62.31 Aligned_cols=90 Identities=12% Similarity=-0.032 Sum_probs=54.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005127 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321 (713)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 321 (713)
..|.+.|++++|...|++..+.+ +.+...|..+..+|...|++++|...|++..+.... +...|..+..++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHH
Confidence 34556666666666666666554 445566666666666666666666666666555432 4455666666666666666
Q ss_pred HHHHHHHHHHHC
Q 005127 322 AAFEILQEAKNQ 333 (713)
Q Consensus 322 ~a~~~~~~m~~~ 333 (713)
+|...+.+..+.
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 666666666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=0.00028 Score=61.07 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=66.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005127 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (713)
...|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|.+.|+...+.. +-+..+|..+..+|...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 445667778888888887777765 4466777777777777788888888887777664 33556777777777777888
Q ss_pred HHHHHHHHHHHhC
Q 005127 179 AKAFGAYGIMRSK 191 (713)
Q Consensus 179 ~~A~~l~~~m~~~ 191 (713)
++|+..|++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8887777777765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=6.1e-05 Score=62.02 Aligned_cols=107 Identities=14% Similarity=0.037 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh---hHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 005127 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCPNT-ITYSILLVA 418 (713)
Q Consensus 343 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~-~t~~~ll~a 418 (713)
..|++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++. ++|+++|+++...+..|+. .++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666667777777777777776654 44566777777777654443 4577777777654322332 255566677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005127 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (713)
Q Consensus 419 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 452 (713)
|.+.|++++|++.|+++++ +.|+..-...+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELER 113 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHH
Confidence 7777777777777777776 4566554444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.82 E-value=0.00014 Score=65.67 Aligned_cols=94 Identities=10% Similarity=-0.020 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 350 (713)
.+......|.+.|++++|+..|.+....... +...|..+..+|.+.|++++|+..|....+.. +-+..+|..+..+|.
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333444444444444444444444443322 44444444444555555555555554444332 123444555555555
Q ss_pred hcCCHHHHHHHHHHHH
Q 005127 351 NAKNWQKALELYEHMK 366 (713)
Q Consensus 351 ~~g~~~~A~~l~~~m~ 366 (713)
+.|++++|...|++..
T Consensus 84 ~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 84 EMESYDEAIANLQRAY 99 (201)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.81 E-value=0.00015 Score=65.39 Aligned_cols=98 Identities=11% Similarity=-0.008 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005127 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (713)
Q Consensus 302 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 381 (713)
|+...+......|.+.|++++|+..|....+.. +.+...|+.+..+|.+.|++++|...|+...+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 334444444444555555555555555544443 2344445555555555555555555555544331 11244444455
Q ss_pred HHHHhCCChhHHHHHHHHHH
Q 005127 382 TALCDGDQLPKTMEVLSDMK 401 (713)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~ 401 (713)
.+|...|++++|+..|++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.80 E-value=0.015 Score=54.37 Aligned_cols=63 Identities=14% Similarity=-0.044 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 005127 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFGAYGIMRSKN 192 (713)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 192 (713)
+..+..|...+...+++++|++.|++..+.| |...+..|-..|.. ..+...|...+......+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~ 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence 3344445555555555555555555555543 33444444444443 334555555555544443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=0.03 Score=53.93 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (713)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 169 (713)
||..--..+..-|.+.|.++.|..++..+. -|..++..+.+.+++..|.+++.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 444444444555556666666666655433 2444555555566666655554433 1445555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHc
Q 005127 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (713)
Q Consensus 170 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~ 247 (713)
..+.+......| .+.......+......++..|-..|.+++...+++..... -.++...++-++..|++.
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~---~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---TTCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC---CccchHHHHHHHHHHHHh
Confidence 555555544332 1112222334444445556666666666666666554321 133444555555555554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00017 Score=59.27 Aligned_cols=105 Identities=13% Similarity=0.041 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 005127 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNALITA 383 (713)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~p~-~~~~~~li~~ 383 (713)
..++..+...+++++|.+.|+.....+ +.++.++..+..++.+.++ +++|+.+|+++.+....|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 346666777778888888888877765 4566777777777776544 4468888888775432222 2356677788
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (713)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (713)
|.+.|++++|++.|+++.+ +.|+..-...+
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l 111 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKEL 111 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHH
Confidence 8888888888888888877 45765443333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.62 E-value=0.017 Score=55.68 Aligned_cols=128 Identities=14% Similarity=0.153 Sum_probs=67.1
Q ss_pred HHHHHHhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 005127 67 FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (713)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 146 (713)
++..|.+.|.++.|..+|..+.+ |..++..+.+.++++.|.+++.... +..+|..+...+.+......+
T Consensus 20 i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la 88 (336)
T d1b89a_ 20 VGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA 88 (336)
T ss_dssp ---------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHH
Confidence 45556566666666666654442 4455556666666666666654331 445666666666655544332
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005127 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (713)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 211 (713)
.+.......+......++..|-..|.+++.+.+++..... -.++...++.++..|++.+
T Consensus 89 -----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 89 -----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp -----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 1122222334445556677777777777777777665433 2445666666777666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.58 E-value=0.00039 Score=56.07 Aligned_cols=88 Identities=10% Similarity=-0.019 Sum_probs=50.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005127 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (713)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (713)
...+.+.|++++|...|+..++.. +-+..+|..+..++.+.|++++|...|++..+.. +.+..+|..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 334555566666666666655543 2245556666666666666666666666655543 22455555566666666666
Q ss_pred HHHHHHHHHH
Q 005127 179 AKAFGAYGIM 188 (713)
Q Consensus 179 ~~A~~l~~~m 188 (713)
++|++.|++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665553
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.57 E-value=0.00039 Score=56.04 Aligned_cols=52 Identities=6% Similarity=0.001 Sum_probs=20.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (713)
Q Consensus 244 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 296 (713)
+.+.|++++|...|+...+.+ +.++.+|..+..++.+.|++++|+..|++..
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 77 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHAR 77 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccc
Confidence 333444444444444433332 2233333333333333444444444433333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.0039 Score=54.19 Aligned_cols=62 Identities=13% Similarity=-0.066 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
+|+.+..+|.+.|++++|+..++..+..... +...+..+..+|...|++++|...|+...+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3445555566666666666666666555432 5555566666666666666666666666554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.33 E-value=0.0038 Score=53.15 Aligned_cols=76 Identities=21% Similarity=0.133 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (713)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 453 (713)
.+|+.+..+|.+.|++++|++.+.+.++. .| +..+|..+..++...|++++|+..|+...+ +.|+.......+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 46777888889999999999999998874 45 678888899999999999999999998887 45654443334443
Q ss_pred H
Q 005127 454 C 454 (713)
Q Consensus 454 ~ 454 (713)
+
T Consensus 144 ~ 144 (153)
T d2fbna1 144 C 144 (153)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.0021 Score=52.96 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=63.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC-----HHHHHHH
Q 005127 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PN-----VHTYGAL 168 (713)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-----~~~~~~l 168 (713)
+-.+...+.+.|++++|+..|.+.++.+ +.+..++..+..+|.+.|++++|++.++++++.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3445566777777777877777777764 446777777777777778888887777776653210 11 1355566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 005127 169 IDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 169 i~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
...+...+++++|+..|.+....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 66667777777777777766543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.0015 Score=53.89 Aligned_cols=94 Identities=11% Similarity=0.186 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----HHHHHHHH
Q 005127 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYSILL 416 (713)
Q Consensus 343 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ll 416 (713)
..+...|.+.|++++|...|.+..+.. +.+...|..+..+|.+.|++++|++.++++++.. .... ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345556667777777777777766553 3456667777777777777777777777765421 0001 23555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 005127 417 VACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~m~~ 437 (713)
..+...+++++|+..|+....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677777777777777776665
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.20 E-value=0.0046 Score=52.64 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005127 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV----IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (713)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 345 (713)
..+......+.+.|++.+|+..|.+....-. .++...... ... ....+|+.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~-----------------~~~-------~~~~~~~Nl 73 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK-----------------KKN-------IEISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH-----------------HHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHh-----------------hhh-------HHHHHHhhH
Confidence 4456667778888888888888888775311 111111100 000 113467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005127 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (713)
Q Consensus 346 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (713)
..+|.+.|++++|.+.++...+.. +.++.+|..+..+|...|++++|+..|++..+ +.|+.......+
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l 141 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHH
T ss_pred HHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 888999999999999999988764 45788999999999999999999999999887 467554433333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.0031 Score=54.90 Aligned_cols=59 Identities=14% Similarity=-0.024 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
|+.+..+|.+.|++++|+..+++.++. .| +...+..+..++...|++++|...|+...+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444445555555544444442 23 344444444455555555555555554444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00022 Score=74.78 Aligned_cols=113 Identities=13% Similarity=-0.025 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005127 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (713)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 348 (713)
...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...|.+..+.. +.+...|+.|...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 3444555555555566665555554433321 12345556666666677777777776666653 3345667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005127 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (713)
Q Consensus 349 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 386 (713)
|...|+..+|...|.+..... +|-..++..|...|.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 777777777777766666543 4556666666665544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.09 E-value=0.006 Score=53.39 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVF 306 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 306 (713)
.+..+...+.+.|++++|...++.+.+.+ +.+...|..++.+|.+.|+.++|++.|+++.. .|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 44556666666666666666666666655 45566666666666666666666666666532 466665443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.00 E-value=0.0069 Score=52.99 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 005127 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAK-----EDGVIPNLVM 446 (713)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~ 446 (713)
..+..+...+...|++++|+..++++.+. .| +...|..++.++.+.|+.++|++.|+++. +.|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34555666666666666666666666553 34 55566666666666666666666666553 2367776654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.98 E-value=0.0064 Score=52.67 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
.|..+..+|.+.|++++|+..+.+.++.... +...|..+..++...|++++|+..|+...+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444444555555555555555555544332 4444555555555555555555555555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.90 E-value=0.0024 Score=53.91 Aligned_cols=38 Identities=13% Similarity=-0.032 Sum_probs=26.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhH
Q 005127 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75 (713)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~ 75 (713)
-+.+++++|++.|+...+.+ |.+...+..++.++...+
T Consensus 8 ~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~ 45 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELS 45 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhh
Confidence 34566888888888888877 777776666666665433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.88 E-value=0.024 Score=48.78 Aligned_cols=61 Identities=8% Similarity=-0.017 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (713)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 298 (713)
|+.+..+|.+.|++++|...++...+.+ +.+..+|..+..+|...|++++|...|.+....
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3334444555555555555555555443 344455555555555555555555555555444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.87 E-value=0.0024 Score=53.96 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005127 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGD-----------QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (713)
Q Consensus 355 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 423 (713)
+++|...|++..+.. +.+..+|..+..+|...| .+++|.+.|++..+ +.|+..+|..-+..+
T Consensus 57 ~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT---- 129 (145)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH----
Confidence 345555555555432 234455555555554433 24566666666665 356655555444333
Q ss_pred CHHHHHHHHHHHHHCC
Q 005127 424 DVEVGLMLLSQAKEDG 439 (713)
Q Consensus 424 ~~~~a~~~~~~m~~~g 439 (713)
..+.+++.+..+.|
T Consensus 130 --~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQG 143 (145)
T ss_dssp --HTHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHHHHh
Confidence 23455555555544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.87 E-value=0.0076 Score=52.13 Aligned_cols=62 Identities=8% Similarity=-0.097 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 005127 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (713)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (713)
..|..+..+|.+.|++++|+..|.+.++.. +.+...|..+..++.+.|++++|.+.|.....
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 344455555556666666666666655543 33455555555666666666666666655554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.00092 Score=69.79 Aligned_cols=224 Identities=10% Similarity=-0.052 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCC--CCCH-HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005127 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL-STFNMLMSVCASSKDSEGAFQVLRLVQ 119 (713)
Q Consensus 43 ~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~ 119 (713)
+|.+.|++..+.. |+....+..+..++...+++++| |+++. +|+. ..++.. ...-...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e--~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVE--QDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHH--HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHH--HHHHHHHHHHHHHHHHHhc
Confidence 6777887776543 33333333344455555666665 33221 1111 111110 0000112344555555555
Q ss_pred HcCCCCCHHHHHHHH--HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 005127 120 EAGLKADCKLYTTLI--TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197 (713)
Q Consensus 120 ~~g~~pd~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 197 (713)
+....++..-....+ ..+...+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+....... ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~ 152 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQ 152 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HH
Confidence 433223221111111 11112233444444433332221 2234455566666666666666666655544221 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005127 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (713)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 277 (713)
.++..+...+...|++++|...|.+.... .+.+..+|+.|...|...|+..+|...|.+..... +|.+.++..|..
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 34555566666666777777766666542 12234566666666666677666666666666554 445566666655
Q ss_pred HHHh
Q 005127 278 CCSQ 281 (713)
Q Consensus 278 ~~~~ 281 (713)
.|.+
T Consensus 229 ~~~~ 232 (497)
T d1ya0a1 229 ALSK 232 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.81 E-value=0.012 Score=50.90 Aligned_cols=95 Identities=8% Similarity=-0.058 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHc---CCCCC-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005127 96 NMLMSVCASSKDSEGAFQVLRLVQEA---GLKAD-----------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (713)
Q Consensus 96 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 161 (713)
.-....+.+.|++.+|...|...+.. ....+ ..+|+.+..+|.+.|++++|+..++...+.. +.+
T Consensus 19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~ 97 (168)
T d1kt1a1 19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SAN 97 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cch
Confidence 33444556666666666666554431 00000 1123334444555555555555555554442 224
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005127 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (713)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 191 (713)
..+|..+..+|...|++++|+..|.+....
T Consensus 98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555555555555555555555555443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.75 E-value=0.00049 Score=64.90 Aligned_cols=54 Identities=11% Similarity=0.233 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhC
Q 005127 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (713)
Q Consensus 32 ~~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (713)
|...++.|++++|+..+++..+.. |.+...+..++.++...|++++|...|+..
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a 56 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQS 56 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445677899999999999888877 666666666666666666666666666643
|
| >d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: SMR domain-like family: Smr domain domain: Nedd4-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.0045 Score=46.18 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=57.0
Q ss_pred eeccccCcchHHHHHHHHHHHHHHHhhhhCCCCCCeEEEccCCccceeccCCchhhhhhhhhhHHHHHHHHHhCCCCCCC
Q 005127 578 VVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGN 657 (713)
Q Consensus 578 ~~~~~~~~~~~~~i~~~~~l~~l~~~~~~~~~~p~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 657 (713)
.+|+|++++..|.-.+..+|...............+ .++||.|.|+....+.++.+|.+.|++-+..|.
T Consensus 3 ~iDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~~~~l---------~IItG~G~hS~~g~~~lk~~V~~~L~~~~~~~~-- 71 (83)
T d2d9ia1 3 VLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYL---------SVITGRGNHSQGGVARIKPAVIKYLISHSFRFS-- 71 (83)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEE---------EEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEE--
T ss_pred eEECCCCCHHHHHHHHHHHHHHHHHhhhhcCCceEE---------EEEECCCCCCCCCcchHHHHHHHHHHHCCCcee--
Confidence 689999999999877766777655444333333322 356899999866566799999999999888775
Q ss_pred Ccc-ceEEec
Q 005127 658 GSY-GKIRIN 666 (713)
Q Consensus 658 ~~~-g~~~~~ 666 (713)
+.| |.|.+.
T Consensus 72 e~~~G~~~V~ 81 (83)
T d2d9ia1 72 EIKPGCLKVM 81 (83)
T ss_dssp CCSTTCEEEE
T ss_pred cCCCcEEEEE
Confidence 335 998874
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.51 E-value=0.0024 Score=60.02 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=34.0
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005127 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
.+.|++++|+..++..++.. +.|...+..+...|+..|++++|.+.|+...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34566666666666666654 445666666666666666666666666666654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.90 E-value=0.065 Score=45.16 Aligned_cols=54 Identities=13% Similarity=0.001 Sum_probs=29.0
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCC-C----------CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005127 101 VCASSKDSEGAFQVLRLVQEAGLK-A----------DCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (713)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~~-p----------d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 154 (713)
.+.+.|++++|++.|++.++.... | ...+|+.+..+|.+.|++++|.+.+++..
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 344556666666666666542110 1 12345556666666666666666555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.78 E-value=0.066 Score=45.08 Aligned_cols=92 Identities=11% Similarity=0.010 Sum_probs=62.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCC----------HHHHHHHHHHHHhCCChhHHHHHHHHHHHC-----CCCCC-
Q 005127 346 MGACSNAKNWQKALELYEHMKSIKL-KPT----------VSTMNALITALCDGDQLPKTMEVLSDMKSL-----GLCPN- 408 (713)
Q Consensus 346 i~~~~~~g~~~~A~~l~~~m~~~~~-~p~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~- 408 (713)
...+.+.|++++|...|++..+..- .|+ ...|+.+..+|.+.|++++|++.+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 4455566777777777777664210 111 356777888888888888888888876541 12222
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005127 409 ----TITYSILLVACERKDDVEVGLMLLSQAKE 437 (713)
Q Consensus 409 ----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (713)
...+..+..+|...|++++|...|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12456677889999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.16 Score=38.44 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005127 236 TIGALMKACANAGQVDRAREVYKMIHKY 263 (713)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 263 (713)
++..+..+|.+.|++++|...++++.+.
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.18 Score=38.13 Aligned_cols=28 Identities=11% Similarity=0.212 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005127 129 LYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (713)
Q Consensus 129 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 156 (713)
+++.|..+|.+.|++++|++.|+++.+.
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 4444444555555555555555554443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.24 E-value=1.2 Score=35.65 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 005127 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKS 367 (713)
Q Consensus 319 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 367 (713)
+.++|.+.+....+.| ++..+..|-.+|.. ..+.++|.++|+...+
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~ 87 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG 87 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhc
Confidence 4444555555444444 23333333333332 2334445555554444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.20 E-value=1.4 Score=34.29 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=72.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005127 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (713)
Q Consensus 174 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~~g~~~~A 253 (713)
-.|.+++..++..+..... +..-||.+|--....-+-+...++++.+-.. ..+ ..++++...
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDl--------------s~C~Nlk~v 75 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL--------------DKCQNLKSV 75 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG--------------GGCSCTHHH
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh-cCc--------------hhhhcHHHH
Confidence 4566677777776665432 4556666666666666666666666665431 111 122222222
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005127 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (713)
Q Consensus 254 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (713)
...+-.+-. +....+..++.+.+.|+-+.-.++++++.+. -.|++...-.+..+|.+.|...++-+++.+.-+.
T Consensus 76 v~C~~~~n~-----~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 222211111 1133444455566666666666666665543 3445556666666666666666666666666665
Q ss_pred CC
Q 005127 334 GI 335 (713)
Q Consensus 334 g~ 335 (713)
|+
T Consensus 150 G~ 151 (161)
T d1wy6a1 150 GE 151 (161)
T ss_dssp TC
T ss_pred hH
Confidence 54
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.69 E-value=1.3 Score=35.34 Aligned_cols=81 Identities=12% Similarity=-0.047 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 005127 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKN 354 (713)
Q Consensus 283 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~ 354 (713)
.+.++|+..|++..+.| +......|...|.. ..+.++|.+.|+...+.| ++.....|..+|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45566666666666554 33344444444433 345677777777777665 34445555555554 345
Q ss_pred HHHHHHHHHHHHhCC
Q 005127 355 WQKALELYEHMKSIK 369 (713)
Q Consensus 355 ~~~A~~l~~~m~~~~ 369 (713)
.++|.++|+...+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666777776666544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.94 E-value=2.1 Score=33.27 Aligned_cols=64 Identities=16% Similarity=0.056 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005127 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (713)
Q Consensus 306 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 370 (713)
.+...++.....|+-++-.+++..+.+.+ ++++...-.+..+|.+.|...++.+++.+.-+.|+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34445555666666666666666655533 55566666666666666666666666666655553
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.96 E-value=18 Score=35.07 Aligned_cols=315 Identities=9% Similarity=-0.030 Sum_probs=172.3
Q ss_pred CCCCcchhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch--HHHHH--------------HHHHHHHhhHHHHHHHHHh
Q 005127 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD--KVYHA--------------RFFNVCKSQKAIKEAFRFF 84 (713)
Q Consensus 21 ~~~~~~~~~~~~~~L~~~g~~~~A~~l~~~m~~~~~~~~~--~~~~~--------------~l~~~~~~~~~~~~A~~~~ 84 (713)
.|.+....+....++...|+-.+|...+..+-..|...+. ..+.. .-+......|+...|..+.
T Consensus 98 ~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~ 177 (450)
T d1qsaa1 98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLA 177 (450)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHH
Confidence 4455666667778888899999998888887766532211 11111 1111122335556666666
Q ss_pred hhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCH
Q 005127 85 KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK--SGKVDAMFEVFHEMVNAGIEPNV 162 (713)
Q Consensus 85 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~ 162 (713)
..++..........+........... . ... ..++......+..++.+ ..+.+.|..++......... +.
T Consensus 178 ~~l~~~~~~~~~a~~~l~~~p~~~~~---~---~~~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~ 248 (450)
T d1qsaa1 178 GQMPADYQTIASAIISLANNPNTVLT---F---ART--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NE 248 (450)
T ss_dssp HTCCGGGHHHHHHHHHHHHCGGGHHH---H---HHH--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CH
T ss_pred hhCChhHHHHHHHHHHHHhChHhHHH---H---Hhc--CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cH
Confidence 66655555555555555433222211 1 111 12333333333333333 25677788888777654322 22
Q ss_pred HHHHHHHHH----HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 005127 163 HTYGALIDG----CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (713)
Q Consensus 163 ~~~~~li~~----~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~ 238 (713)
.-+..+-.. ....+..+.+..++......+ .+.......+......+++..+...+..|... ......-.-
T Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~---~~~~~r~~Y 323 (450)
T d1qsaa1 249 DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME---AKEKDEWRY 323 (450)
T ss_dssp HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT---GGGSHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc---cccHHHHHH
Confidence 223222222 223466677777777776653 34444444555666778888888888877532 112233334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC-HHH---HHHHHH
Q 005127 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV--IPD-EVF---LSALID 312 (713)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~-~~t---~~~li~ 312 (713)
-+..++...|+.+.|...|...... ++ |-.++.+-.-...+. +....+ .++ ... -...+.
T Consensus 324 W~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~~Lg~~~~--------~~~~~~~~~~~~~~~~~~~~~ra~ 389 (450)
T d1qsaa1 324 WQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQRIGEEYE--------LKIDKAPQNVDSALTQGPEMARVR 389 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHHHTTCCCC--------CCCCCCCSCCCCHHHHSHHHHHHH
T ss_pred HHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHHHcCCCCC--------CCcCCCCccHHHhhhcChHHHHHH
Confidence 4567788889999998888887642 22 333322211111100 000000 000 000 112345
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005127 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (713)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 366 (713)
.+...|....|...+..+... .+......+.....+.|.++.|+.......
T Consensus 390 ~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 390 ELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 566789999999988888754 245566677888889999999988776654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.44 E-value=19 Score=34.89 Aligned_cols=308 Identities=10% Similarity=0.043 Sum_probs=149.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhHHHHHHHHHhhhCCC-C-CHHHHHHHHHHHHhCCChHH
Q 005127 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-P-TLSTFNMLMSVCASSKDSEG 110 (713)
Q Consensus 33 ~~L~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~ 110 (713)
...+++|+..++.++...+.. .|....+...-+..-.......+...+++.-+. | ....-...+..+.+.++++.
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~d---ypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~ 90 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKD---YPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTT---STTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHhhhcC---CCCHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHH
Confidence 345577777777777766632 132222211111111122234555555555432 1 11112233445566666654
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH------------------
Q 005127 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC------------------ 172 (713)
Q Consensus 111 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~------------------ 172 (713)
.+..+ ...+.+...-.....+....|+.+.|.+.+..+-..|.. ....+..+...+
T Consensus 91 ~~~~~-----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~ 164 (450)
T d1qsaa1 91 LLAFS-----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLA 164 (450)
T ss_dssp HHHHC-----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHhc-----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 33322 122334444455556666666666666655555444311 222233333333
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH--cCCH
Q 005127 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN--AGQV 250 (713)
Q Consensus 173 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~~~~~ll~~~~~--~g~~ 250 (713)
...|++..|..+...+.. .........+....+-..+ ...... ..++......+..++.+ ..+.
T Consensus 165 l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~---~~~~~~-------~~~~~~~~~~~~~~l~rla~~d~ 230 (450)
T d1qsaa1 165 MKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPNTV---LTFART-------TGATDFTRQMAAVAFASVARQDA 230 (450)
T ss_dssp HHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGH---HHHHHH-------SCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhH---HHHHhc-------CCCChhhhHHHHHHHHHHhccCh
Confidence 334444444444332211 1122233333333222222 111111 11222222233333333 2467
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005127 251 DRAREVYKMIHKYNIKGTPEVYT----IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (713)
Q Consensus 251 ~~A~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 326 (713)
+.|..++......... +..-+. .+...+...+..+.+...+......+. +.......+......++...+...
T Consensus 231 ~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~ 307 (450)
T d1qsaa1 231 ENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTW 307 (450)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHH
Confidence 7888888776654322 222222 222333445667778888777766643 444444455556677888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005127 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (713)
Q Consensus 327 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 367 (713)
+..|... ......-.-=+..++...|+.+.|...|.....
T Consensus 308 ~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 308 LARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 8776432 222344445566778888999999999888764
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.51 E-value=6.4 Score=28.90 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=52.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005127 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (713)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (713)
+.-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+..+.. ..++...|..++.-+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 34466777777778889999999999999999999999999999988754 233456888887654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.29 E-value=9.3 Score=29.60 Aligned_cols=77 Identities=10% Similarity=0.067 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005127 372 PTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP-NT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (713)
Q Consensus 372 p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 446 (713)
+.+.|--....++.++. +.++|+.+|++..+. .| +. ..+-.+.-+|.+.|++++|+..++.+++ +.|+..-
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 45555555555666543 345777777777653 23 32 3444556677788888888888888777 4566555
Q ss_pred HHHHHH
Q 005127 447 FKCIIG 452 (713)
Q Consensus 447 ~~~li~ 452 (713)
...|-.
T Consensus 109 A~~L~~ 114 (124)
T d2pqrb1 109 VGALKS 114 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|